format-version: 1.2
date: 07:12:2010 08:53
subsetdef: developmental_classification "developmental_classification"
subsetdef: functional_classification "functional_classification"
subsetdef: grouping_class "Subset consisting of classes creating for grouping purposes"
subsetdef: uberon_slim "Uberon slim"
synonymtypedef: ATTRIBUTION_REQUIRED "expert consultation and attribution required"
synonymtypedef: DUBIOUS "dubious or contested synonym"
synonymtypedef: INCONSISTENT "indicates that a synonym is used in an inconsistent or confusing way, typically between species"
synonymtypedef: PLURAL "plural term"
synonymtypedef: SENSU "taxonomic disambiguation"
default-namespace: uberon
treat-xrefs-as-equivalent: CARO
treat-xrefs-as-equivalent: GO
ontology: uberon_edit
[Term]
id: UBERON:0000000
name: processual entity
def: "An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity." [span:ProcessualEntity]
disjoint_from: UBERON:0001062 ! anatomical entity
created_by: cjm
creation_date: 2009-04-09T05:51:24Z
[Term]
id: UBERON:0000002
name: uterine cervix
def: "Lower, narrow portion of the uterus where it joins with the top end of the vagina." [Wikipedia:Cervix]
comment: This class was created automatically from a combination of ontologies.
subset: uberon_slim
synonym: "cervical canal" EXACT []
synonym: "cervical canal of uterus" EXACT []
synonym: "cervix" EXACT []
synonym: "cervix of uterus" EXACT []
synonym: "neck of uterus" EXACT []
synonym: "uterine cervix" EXACT []
xref: BTO:0001421
xref: EFO:0000979
xref: FMA:17740
xref: GAID:376
xref: HOG:0001359
xref: MA:0000392
xref: MAT:0000292
xref: OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA
is_a: UBERON:0001560 ! neck of organ
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: continuous_with UBERON:0000996 ! vagina
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0000003
name: naris
def: "Orifice of the olfactory system. The naris is the route by which odorants enter the olfactory system[MAH]." [UBERON:MAH]
subset: uberon_slim
xref: AAO:0000311
xref: EHDAA:9083
xref: EHDAA2:0001225
xref: galen:Naris
xref: HOG:0000663
xref: MA:0000282
xref: TAO:0000550
xref: ZFA:0000550
is_a: UBERON:0000161 ! implied link automatically realized ! orifice
relationship: part_of UBERON:0005725
intersection_of: UBERON:0000161 ! orifice
intersection_of: part_of UBERON:0005725 ! olfactory system
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0000004
name: olfactory apparatus
def: "Surface structure that houses the nostrils, or nares, which admit and expel air for respiration in conjunction with the mouth. and behind the nose is the olfactory mucosa and the sinuses. Behind the nasal cavity, air next passes through the pharynx, shared with the digestive system, and then into the rest of the respiratory system. In humans, the nose is located centrally on the face; on most other mammals, it is on the upper tip of the snout. In cetaceans, the nose has been reduced to the nostrils, which have migrated to the top of the head, producing a more streamlined body shape and the ability to breathe while mostly submerged. Conversely, the elephant's nose has elaborated into a long, muscular, manipulative organ called the trunk. GO: The nose is the specialized structure of the face that serves as the organ of the sense of smell and as part of the respiratory system. Includes the nasi externus (external nose) and cavitas nasi (nasal cavity)." [Wikipedia:Nose]
comment: TODO - distinguish generic olfactory apparatus from nose. What happens if we have subtypes like epithelium - they become part of nervous system?
subset: uberon_slim
synonym: "nose" EXACT []
synonym: "peripheral olfactory organ" EXACT []
synonym: "proboscis" RELATED []
xref: BTO:0000840
xref: EFO:0000828
xref: EHDAA:1502
xref: EHDAA2:0001274
xref: FMA:46472
xref: GAID:77
xref: galen:Nose
xref: MA:0000281
xref: MAT:0000139
xref: MIAA:0000139
xref: ncithesaurus:Nose
xref: OpenCyc:Mx4rvViCbJwpEbGdrcN5Y29ycA
xref: TAO:0000047
xref: XAO:0003172
xref: ZFA:0000047
is_a: UBERON:0002268 ! olfactory organ
relationship: develops_from UBERON:0003050 ! olfactory placode
[Term]
id: UBERON:0000005
name: chemosensory organ
subset: functional_classification
subset: uberon_slim
synonym: "chemosensory sensory organ" EXACT [FBbt:00005157]
xref: FBbt:00005157
is_a: UBERON:0000020 ! implied link automatically realized ! sense organ
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system
relationship: part_of UBERON:0005726 ! chemosensory system
[Term]
id: UBERON:0000006
name: islet of Langerhans
def: "Regions of the pancreas that contain its endocrine (i.e., hormone-producing) cells." [Wikipedia:Islet_of_Langerhans]
comment: TODO - is plural equivalent to endocrine pancreas? It has been recognized that the cytoarchitecture of pancreatic islets differs between species[WP].
subset: uberon_slim
synonym: "islets of langerhans" RELATED []
synonym: "pancreatic insula" EXACT []
synonym: "pancreatic islet" EXACT []
xref: BTO:0000991
xref: EFO:0000856
xref: FMA:16016
xref: GAID:324
xref: HOG:0000646
xref: MA:0000127
xref: MAT:0000076
xref: MIAA:0000076
xref: ncithesaurus:Islet_of_Langerhans
xref: XAO:0000159
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0000016 ! endocrine pancreas
[Term]
id: UBERON:0000007
name: pituitary gland
def: "The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN]." [Wikipedia:Pituitary_gland, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hypophysis" RELATED [ZFA:0000118]
synonym: "hypophysis cerebri" RELATED [MA:0000176]
synonym: "pituitary" EXACT [BTO:0001073]
synonym: "pituitary body" EXACT [BTO:0001073]
xref: BTO:0001073
xref: EFO:0000857
xref: EHDAA:2183
xref: EHDAA:4477
xref: EHDAA2:0001471
xref: FMA:13889
xref: GAID:457
xref: HOG:0000143
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray1180.png/200px-Gray1180.png
xref: MA:0000176
xref: MAT:0000077
xref: MIAA:0000077
xref: ncithesaurus:Pituitary_Gland
xref: NIF_GrossAnatomy:birnlex_1353
xref: OpenCyc:Mx4rv6NQYJwpEbGdrcN5Y29ycA
xref: TAO:0000118
xref: XAO:0000017
xref: ZFA:0000118
is_a: UBERON:0002368 ! implied link automatically realized ! endocrine gland
is_a: UBERON:0002530 ! gland
is_a: UBERON:0003296 ! implied link automatically realized ! gland of diencephalon
relationship: part_of UBERON:0000949 ! endocrine system
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0000009
name: submucosa
def: "A layer of dense irregular connective tissue in the gastrointestinal tract that supports the mucosa, as well as joins the mucosa to the bulk of underlying smooth muscle (fibers running circularly within layer of longitudinal muscle). [WP,unvetted]." [Wikipedia:Submucosa]
comment: see comments re FMA for mucosa
subset: uberon_slim
xref: BTO:0002107
xref: FMA:85391
xref: FMA:85392
xref: http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png
xref: ncithesaurus:Submucosa
is_a: UBERON:0004923 ! organ component layer
relationship: has_part UBERON:0002384 ! connective tissue
[Term]
id: UBERON:0000010
name: peripheral nervous system
def: "Nervous structures including ganglia outside of the central nervous system. Divided into somatic nervous system and autonomic nervous system" [FB:gg, OMD:peripheral+nervous+system, Wikipedia:Peripheral_nervous_system, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "PNS" RELATED []
xref: AAO:0000429
xref: BILA:0000081
xref: BTO:0001028
xref: EFO:0000891
xref: EHDAA:2893
xref: EHDAA2:0001445
xref: FBbt:00005098
xref: FMA:9903
xref: GAID:715
xref: HOG:0000399
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Nervous_system_diagram.png/200px-Nervous_system_diagram.png
xref: MA:0000218
xref: MAT:0000338
xref: MIAA:0000338
xref: ncithesaurus:Peripheral_Nervous_System
xref: NIF_GrossAnatomy:birnlex_1111
xref: TAO:0000142
xref: XAO:0000178
xref: ZFA:0000142
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system
relationship: spatially_disjoint_from UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0000011
name: parasympathetic nervous system
def: "The parasympathetic nervous system (PSNS) is a division of the autonomic nervous system (ANS), along with the sympathetic nervous system (SNS) and enteric nervous system (ENS). The ANS is a subdivision of the peripheral nervous system (PNS). ANS sends fibers to three tissues: cardiac muscle, smooth muscle, or glandular tissue. This stimulation, sympathetic or parasympathetic, is to control smooth muscle contraction, regulate cardiac muscle, or stimulate or inhibit glandular secretion [Wikipedia]. The parasympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia [GO]." [Wikipedia:Parasympathetic_nervous_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "parasympathetic part of autonomic division of nervous system" EXACT []
synonym: "PNS - parasympathetic" EXACT []
xref: BTO:0001833
xref: EFO:0000894
xref: EHDA:10096
xref: FMA:9907
xref: GAID:708
xref: HOG:0000755
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png
xref: MA:0000223
xref: MAT:0000101
xref: MIAA:0000101
xref: ncithesaurus:Parasympathetic_Nervous_System
xref: NIF_GrossAnatomy:birnlex_2517
xref: TAO:0001575
xref: ZFA:0001575
is_a: UBERON:0002410 ! autonomic nervous system
relationship: part_of UBERON:0002410 ! autonomic nervous system
[Term]
id: UBERON:0000012
name: somatic nervous system
def: "." [Wikipedia:Somatic_nervous_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "PNS - somatic" EXACT []
xref: EFO:0000892
xref: EFO:0000898
xref: FMA:9904
xref: MA:0002850
xref: MAT:0000099
xref: MAT:0000342
xref: MIAA:0000099
xref: MIAA:0000342
xref: NIF_GrossAnatomy:nlx_anat_100301
xref: WBbt:0005760
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0000013
name: sympathetic nervous system
def: "The Sympathetic Nervous System (SNS) is a branch of the autonomic nervous system along with the enteric nervous system and parasympathetic nervous system. It is always active at a basal level (called sympathetic tone) and becomes more active during times of stress. Its actions during the stress response comprise the fight-or-flight response [Wikipedia]. he sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [GO]." [Wikipedia:Sympathetic_nervous_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sympathetic nervous system" EXACT []
synonym: "sympathetic part of autonomic division of nervous system" EXACT []
xref: BTO:0001832
xref: EFO:0000893
xref: FMA:9906
xref: GAID:710
xref: HOG:0000384
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png
xref: MA:0000225
xref: MIAA:0000100
xref: ncithesaurus:Sympathetic_Nervous_System
xref: NIF_GrossAnatomy:birnlex_2516
xref: TAO:0001576
xref: ZFA:0001576
is_a: UBERON:0002410 ! autonomic nervous system
relationship: part_of UBERON:0002410 ! autonomic nervous system
[Term]
id: UBERON:0000014
name: zone of skin
def: "A sub-region of the skin. Note the distinct between the entire skin of the body, of which there is only 1 in an organism, and zones of skin, of which there can be many. Examples: skin of knee" [GOC:cjm, Wikipedia:Skin]
comment: we assume that mouse, HOG and GAID all mean zone of skin when they say skin. We also choose skin as an exact synonym, as it is more intuitive
synonym: "portion of skin" EXACT []
synonym: "region of skin" EXACT []
synonym: "skin" EXACT [MA:0000151]
synonym: "skin region" EXACT []
synonym: "skin zone" EXACT []
xref: EHDAA:6530
xref: EHDAA2:0001844
xref: FMA:86166
xref: GAID:933
xref: HOG:0000860
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png
xref: MA:0000151
xref: MAT:0000284
xref: MIAA:0000284
xref: OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0000015
name: anatomical boundary
def: "Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface." [CARO:MAH]
synonym: "anatomical line" EXACT []
xref: AEO:0000008
xref: AEO:0000192
xref: BILA:0000008
xref: CARO:0000008
xref: EHDAA2:0003008
xref: FMA:256502
xref: HAO:0000008
xref: ZFA:0001689
is_a: UBERON:0000466 ! immaterial anatomical entity
disjoint_from: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0000016
name: endocrine pancreas
def: "The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin[GO]. // The zebrafish endocrine pancreas is composed of small groups of islet cells that are distributed throughout the exocrine pancreas[ZFIN]." [GOC:GO, Wikipedia:Endocrine_pancreas]
subset: uberon_slim
synonym: "endocrine pancreas" EXACT []
synonym: "islets of Langerhans" RELATED []
synonym: "pars endocrina pancreatis" EXACT []
xref: BTO:0000650
xref: FMA:16018
xref: HOG:0000049
xref: MA:0001582
xref: ncithesaurus:Endocrine_Pancreas
xref: TAO:0001260
xref: ZFA:0001260
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0000017
name: exocrine pancreas
def: "The exocrine pancreas produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells [GO] // The exocrine pancreas is composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion." [GOC:GO, Wikipedia:Exocrine_pancreas]
subset: uberon_slim
synonym: "exocrine pancreas" EXACT []
synonym: "pars exocrina pancreatis" EXACT []
xref: BTO:0000434
xref: FMA:16017
xref: HOG:0000048
xref: MA:0002415
xref: ncithesaurus:Exocrine_Pancreas
xref: TAO:0001249
xref: XAO:0000137
xref: ZFA:0001249
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001264 ! pancreas
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0000018
name: compound eye
def: "A light sensing organ composed of ommatidia" [FB:gg, Wikipedia:Compound_eye]
subset: uberon_slim
synonym: "adult compound eye" RELATED []
synonym: "insect eye" RELATED []
xref: BTO:0001921
xref: FBbt:00004508
xref: HAO:0000217
is_a: UBERON:0000970 ! eye
relationship: has_part UBERON:0000971 ! ommatidium
[Term]
id: UBERON:0000019
name: camera-type eye
alt_id: UBERON:FMA_12513-MIAA_0000283-XAO_0000181
def: "GO: The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field. Organ with organ cavity which is connected to the optic nerve, allowing light to enter it and project onto a light-sensitive panel of cells, known as the retina, at the rear of the eye [FMA]." [FMA:12513, GO:0043010, Image:http\://genome.cshlp.org/content/14/8/1555/F1.large.jpg, Image:http\://www.pnas.org/content/94/6/2098/F1.large.jpg]
comment: FMA distinguishes Eye (subdivision of face) from Eyeball (organ). Here we are referring to the organ but we also include Eye as being subsumed
subset: uberon_slim
synonym: "Orbital part of face" RELATED []
synonym: "Orbital region" RELATED []
synonym: "vertebrate eye" EXACT []
xref: EHDAA:936
xref: EHDAA2:0000484
xref: FMA:12513
xref: FMA:54448
xref: MA:0000261
xref: ncithesaurus:Eye
xref: NIF_GrossAnatomy:birnlex_1169
xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvVil5pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycA
xref: TAO:0000107
xref: XAO:0000179
xref: ZFA:0000107
is_a: UBERON:0000047 ! simple eye
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0000020
name: sense organ
def: "An organ that is part of a sense organ system." [Wikipedia:Sense_organ]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "organ of sense organ system" EXACT [OBOL:automatic]
synonym: "organ of sensory organ system" EXACT [OBOL:automatic]
synonym: "organ of sensory system" EXACT [OBOL:automatic]
synonym: "sense organ system organ" EXACT [OBOL:automatic]
synonym: "sensillum" NARROW [WBbt:0006929]
synonym: "sensor" RELATED []
synonym: "sensory organ" EXACT []
synonym: "sensory organ system organ" EXACT [OBOL:automatic]
synonym: "sensory system organ" EXACT [OBOL:automatic]
xref: AEO:0000094
xref: BTO:0000202
xref: EHDAA:500
xref: EHDAA2:0001824
xref: FBbt:00005155
xref: FMA:75259
xref: GAID:63
xref: HAO:0000930
xref: HOG:0001407
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png
xref: MA:0000017
xref: WBbt:0006929
is_a: UBERON:0000062 ! organ
relationship: systemic_part_of UBERON:0001032
intersection_of: UBERON:0000062 ! organ
intersection_of: systemic_part_of UBERON:0001032 ! sensory system
relationship: systemic_part_of UBERON:0001032 ! sensory system
[Term]
id: UBERON:0000021
name: cutaneous appendage
def: "Appendage that protrudes from the skin" []
subset: uberon_slim
is_a: UBERON:0000026 ! appendage
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0000022
name: feather
def: "." [Wikipedia:Feather]
subset: uberon_slim
xref: BTO:0000447
xref: EFO:0000955
xref: GAID:1214
xref: MAT:0000156
xref: OpenCyc:Mx4rvVjW-5wpEbGdrcN5Y29ycA
is_a: UBERON:0000021 ! cutaneous appendage
[Term]
id: UBERON:0000023
name: wing
def: "Appendage that is used to produce lift for flight through the air." [Wikipedia:Wing]
comment: This class is not monophyletic. See also: GO:0007629
subset: uberon_slim
xref: BTO:0001463
xref: EFO:0000885
xref: GAID:1217
xref: MAT:0000202
xref: MIAA:0000202
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000024
name: forelimb wing
def: "Forelimb that is used to produce lift for flight through the air." []
comment: TODO - check specific definition of forelimb
subset: uberon_slim
is_a: UBERON:0000023 ! wing
is_a: UBERON:0002102 ! forelimb
relationship: homologous_to UBERON:0002102 ! forelimb
[Term]
id: UBERON:0000025
name: tube
def: "Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts. with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system" [GO:0035295, PMID:12526790]
synonym: "epithelial or endothelial tube" EXACT []
xref: galen:Tube
xref: ncithesaurus:Tube
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000026
name: appendage
def: "Organ or organ part that is attached to the body of an organism. For example a limb[GO, modified]. An appendage is an external body part, or natural prolongation, that protrudes from an organism's body, such as a vertebrate's limbs[BILA]." [BILA:0000018, GO:0048736, Wikipedia:Appendage]
comment: GO includes tree trunks, but excludes antennae. We modify trunk to body in our definition. Note this is currently a subtype of organism subdivision - which would exclude feathers
subset: uberon_slim
synonym: "limbs/digits/tail" RELATED [MP:0000001]
xref: AEO:0000193
xref: BILA:0000018
xref: EFO:0000799
xref: EHDAA2:0003193
xref: FBbt:00007000
xref: HAO:0000144
xref: MAT:0000023
xref: MIAA:0000023
xref: ncithesaurus:Appendage
xref: OpenCyc:Mx4rvViC-JwpEbGdrcN5Y29ycA
xref: XAO:0000218
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000027
name: hind digit
comment: This class was created automatically from a combination of ontologies
synonym: "hind digit" EXACT []
synonym: "hindlimb digit" RELATED []
xref: AAO:0000888
xref: XAO:0003035
is_a: UBERON:0002544 ! digit
[Term]
id: UBERON:0000029
name: lymph node
def: "Oval or bean shaped bodies (1 - 30 mm in diameter) located along the lymphatic system. Lymph nodes are garrisons of B, T, and other immune cells. Lymph nodes are found all through the body, and act as filters or traps for foreign particles. They contain white blood cells that use oxygen to process. Thus they are important in the proper functioning of the immune system. The lymph node is surrounded by a fibrous capsule, and inside the lymph node the fibrous capsule extends to form trabeculae. The substance of the lymph node is divided into the outer cortex and the inner medulla surrounded by the former all around except for at the hilum, where the medulla comes in direct contact with the surface. Thin reticular fibers, elastin and reticular fibers form a supporting meshwork called reticular network (RN) inside the node, within which the white blood cells (WBCs), most prominently, lymphocytes are tightly packed as follicles in the cortex. Elsewhere, there are only occasional WBCs. The RN provides not just the structural support, but also provide surface for adhesion of the dendritic cells, macrophages and lymphocytes. It allows for exchange of material with blood through the high endothelial venules and provides the growth and regulatory factors necessary for activation and maturation of immune cells[WP]." [GAID:947, Wikipedia:Lymph_node]
comment: do not include FBbt:00001668 lymph gland
subset: uberon_slim
xref: BTO:0000784
xref: EFO:0000872
xref: FMA:5034
xref: GAID:947
xref: HOG:0001273
xref: MA:0000139
xref: MAT:0000442
xref: ncithesaurus:Lymph_Node
xref: OpenCyc:Mx4rwLPqLpwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
relationship: continuous_with UBERON:0001473 ! lymphatic vessel
relationship: has_part UBERON:0002391 ! lymph
relationship: part_of UBERON:0002465 ! lymphoid system
[Term]
id: UBERON:0000030
name: lamina propria
def: "A thin layer of loose connective tissue which lies beneath the epithelium and together with the epithelium constitutes the mucosa[WP]. The lamina propria contains capillaries and a central lacteal (lymph vessel) in the small intestine, as well as lymphoid tissue. Lamina propria also contains glands with the ducts opening on to the mucosal epithelium, that secrete mucus and serous secretions." [Wikipedia:Lamina_propria]
subset: uberon_slim
synonym: "lamina propria mucosa" EXACT []
synonym: "lamina propria mucosae" EXACT []
xref: BTO:0002330
xref: FMA:62517
xref: ncithesaurus:Lamina_Propria
is_a: UBERON:0004923 ! organ component layer
relationship: adjacent_to UBERON:0000483 ! epithelium
relationship: has_part UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0000344 ! mucosa
[Term]
id: UBERON:0000031
name: lamina propria of trachea
synonym: "lamina propria mucosa of trachea" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of windpipe" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of trachea" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of windpipe" EXACT [OBOL:automatic]
synonym: "lamina propria of windpipe" EXACT [OBOL:automatic]
synonym: "trachea lamina propria" EXACT []
synonym: "trachea lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "trachea lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "tracheal lamina propria" EXACT []
synonym: "windpipe lamina propria" EXACT [OBOL:automatic]
synonym: "windpipe lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "windpipe lamina propria mucosae" EXACT [OBOL:automatic]
xref: MA:0001858
xref: ncithesaurus:Trachea_Lamina_Propria
is_a: UBERON:0004779 ! implied link automatically realized ! respiratory system lamina propria
relationship: part_of UBERON:0001005
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0001005 ! respiratory airway
relationship: part_of UBERON:0001005 ! respiratory airway
[Term]
id: UBERON:0000032
name: cranial structure
def: "skeletal element that is part of a cranium." [UBERON:automatic]
subset: uberon_slim
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004765 ! implied link automatically realized ! skeletal element
relationship: part_of UBERON:0003128
intersection_of: UBERON:0004765 ! skeletal element
intersection_of: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0000033
name: head
alt_id: UBERON:FBbt_00000004-FBbt_00003007-FMA_46565-FMA_7154-FMA_87596-MA_0000023-MA_0000316-MIAA_0000017-MIAA_0000149-MIAA_0000294-MIAA_0000340-WBbt_0005739-XAO_0003024-ZFA_0000737-ZFA_0001114
def: "The head is the anterior-most division of the body [GO]. Subdivision of skeletal system which consists of the skeleton of the head and its joints. // Cardinal body part, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the skull, it is partially surrounded by skin of head. Examples: There is only one head. // anterior-most body region containing the pharynx. // Organism subdivision that is the part of the body consisting of the cranial and pharyngeal regions. // Skeletal system which is part of the skull, including the splanchnocranium, chondrocranium, and dermatocranium. // Organism subdivision which is the part of the body which consists of the cranial and pharygeal regions." [WB:rynl, Wikipedia:Head, ZFA:0001114, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adult head" EXACT []
synonym: "cranial skeleton" RELATED []
synonym: "epicranial plate" RELATED []
synonym: "head tissue" RELATED []
xref: AEO:0000106
xref: BILA:0000115
xref: BTO:0000282
xref: EFO:0000964
xref: EHDAA:9184
xref: EHDAA2:0003106
xref: FBbt:00000004
xref: FMA:7154
xref: GAID:61
xref: galen:Head
xref: HAO:0000397
xref: MA:0000023
xref: MAT:0000294
xref: MIAA:0000294
xref: ncithesaurus:Head
xref: NIF_GrossAnatomy:birnlex_1230
xref: OpenCyc:Mx4rEOLm4rgPEdmAAAACs6hRjg
xref: OpenCyc:Mx4rvVi6YJwpEbGdrcN5Y29ycA
xref: TAO:0001114
xref: WBbt:0005739
xref: XAO:0003024
xref: ZFA:0001114
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000035
name: primary ovarian follicle
synonym: "folliculus ovaricus primarius" EXACT []
synonym: "ovary primary follicle" EXACT [MA:0002907]
synonym: "preantral follicle of ovary" EXACT []
synonym: "primary egg follicle" RELATED []
synonym: "primary follicle of ovary" EXACT [FMA:18634]
xref: FMA:18634
xref: MA:0002907
is_a: UBERON:0001305 ! ovarian follicle
[Term]
id: UBERON:0000036
name: secondary ovarian follicle
synonym: "antral follice" EXACT [GO:0001547]
synonym: "antral follicle of ovary" EXACT []
synonym: "antral ovarian follice" EXACT [GO:0001547]
synonym: "folliculus ovaricus secondarius" EXACT []
synonym: "secondary egg follicle" RELATED []
synonym: "secondary follicle of ovary" EXACT []
xref: FMA:18637
xref: MA:0002908
xref: MA:0002909
is_a: UBERON:0001305 ! ovarian follicle
relationship: develops_from UBERON:0000035 ! primary ovarian follicle
[Term]
id: UBERON:0000037
name: tertiary ovarian follicle
def: "Ovarian follicle is the basic unit of female reproductive biology and is composed of roughly spherical aggregations of cells found in the ovary. They contain a single oocyte (aka ovum or egg). These structures are periodically initiated to grow and develop, culminating in ovulation of usually a single competent oocyte. These eggs/ova are only developed once every menstrual cycle (i. e, once a month). [WP,unvetted]." [Wikipedia:Graafian_follicle]
subset: uberon_slim
synonym: "folliculus ovaricus tertiarius" EXACT []
synonym: "folliculus ovaricus tertiarius (vesiculous)" EXACT []
synonym: "Graafian follicle" EXACT []
synonym: "tertiary egg follicle" RELATED []
xref: FMA:18641
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Primary_follicle-4.JPG/200px-Primary_follicle-4.JPG
xref: ncithesaurus:Graafian_Follicle
is_a: UBERON:0001305 ! ovarian follicle
relationship: develops_from UBERON:0000036 ! secondary ovarian follicle
[Term]
id: UBERON:0000038
name: follicular fluid
def: "The fluid surrounding the OVUM and GRANULOSA CELLS in the Graafian follicle ( OVARIAN FOLLICLE). The follicular fluid contains sex steroids, glycoprotein hormones, plasma proteins, mucopolysaccharides, and enzymes." [MESH:D015571, Wikipedia:Follicular_fluid]
comment: Follicular fluid is a liquid which fills the follicular antrum and surrounds the ovum in an ovarian follicle. This fluid is rich in hyaluronic acid.
subset: uberon_slim
synonym: "antral fluid, ovarian follicle" RELATED []
synonym: "liquor folliculi" EXACT []
xref: FMA:18665
xref: GAID:372
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray3.png/200px-Gray3.png
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001305 ! ovarian follicle
relationship: surrounded_by UBERON:0000039 ! follicular antrum
[Term]
id: UBERON:0000039
name: follicular antrum
def: "Region of ovarian follicle filled with follicular fluid." [http://en.wikipedia.org/wiki/Follicular_antrum, Wikipedia:Follicular_antrum]
subset: uberon_slim
xref: FMA:18675
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001305 ! ovarian follicle
[Term]
id: UBERON:0000040
name: Leydig's organ
def: "Along with the spleen and special tissue around the gonads, this structure produces red blood cells and it is nestled along the top and bottom of the esophagus. Found in elasmobranchs (sharks and rays) but with some exceptions. Leydig's organ can be quite large - a 1.6-kilogram (3.5-pound) one was reported from a 1.8-metre (6-foot) long Bluntnose Sixgill Shark (Hexanchus griseus)" [http://www.elasmo-research.org/education/topics/p_blood_cells.htm, Wikipedia:Leydig's_organ]
subset: uberon_slim
is_a: UBERON:0003103 ! compound organ
[Term]
id: UBERON:0000041
name: dermal denticle
def: "small outgrowths which cover the skin of many cartilaginous fish including sharks. They are similar in structure to teeth, and teeth may have evolved from denticle-like structures in primitive fish.[citation needed] The placoid scales in sharks are formed of dentine with dermal papillae located in the core. These scales develop from the dermal layer of the skin, which is in contrast to the epidermal development seen the in the elasmoid scales of tetrapods. The shape of denticle varies from species to species and can be used in identification. Studies have found that the denticles create tiny vortices that reduce drag to make swimming more efficient. Denticles also allow sharks to swim silently compared to other fish that generate considerable noise when they ply the water." [Wikipedia:Dermal_denticle]
comment: TODO check dentin def // Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone.
subset: uberon_slim
synonym: "placoid scale" EXACT []
is_a: UBERON:0004756 ! dermal skeletal element
relationship: has_part UBERON:0001751 ! dentine
[Term]
id: UBERON:0000042
name: serous membrane
def: "a smooth membrane consisting of a thin layer of cells which excrete serous fluid. Serous membranes line and enclose several body cavities, known as serous cavities, where they secrete a lubricating fluid which reduces friction from muscle movement. Serosa is not to be confused with adventitia, a connective tissue layer which binds together structures rather than reducing friction between them. Each serous membrane is composed of a secretory epithelial layer and a connective tissue layer underneath. The epithelial layer, known as mesothelium, consists of a single layer of avascular flat nucleated cells (cuboidal epithelium) which produce the lubricating serous fluid. This fluid has a consistency similar to thin mucus. These cells are bound tightly to the underlying connective tissue. The connective tissue layer provides the blood vessels and nerves for the overlying secretory cells, and also serves as the binding layer which allows the whole serous membrane to adhere to organs and other structures.[WP]." [Wikipedia:Serosa, Wikipedia:Serous_membrane]
comment: TODO - add generic membrane parent? TODO - split into serosa and serous membrane?
subset: uberon_slim
synonym: "serosa" EXACT []
xref: FMA:45637
xref: FMA:9581
xref: GAID:19
xref: http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png
xref: ncithesaurus:Serosa
is_a: UBERON:0004457 ! cavity lining
relationship: has_part UBERON:0001136 ! mesothelium
relationship: has_part UBERON:0002384 ! connective tissue
[Term]
id: UBERON:0000043
name: tendon
def: "A fibrous, strong, connective tissue that connects muscle to bone or integument and is capable of withstanding tension. Tendons are similar to ligaments except that ligaments join one bone to another. Tendons and muscles work together and can only exert a pulling force." [BTO:0000421, http://en.wikipedia.org/wiki/Tendon, OMD:connective+tissue, OMD:tendon, Wikipedia:Tendon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AEO:0000091
xref: BTO:0001356
xref: EFO:0000952
xref: EHDAA2:0003091
xref: FMA:9721
xref: GAID:276
xref: galen:Tendon
xref: HAO:0000996
xref: HOG:0001286
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Achilles-tendon.jpg/200px-Achilles-tendon.jpg
xref: MA:0000115
xref: ncithesaurus:Tendon
xref: OpenCyc:Mx4rvVjefJwpEbGdrcN5Y29ycA
xref: XAO:0000173
is_a: UBERON:0002384 ! connective tissue
relationship: attached_to UBERON:0002385 ! muscle tissue
[Term]
id: UBERON:0000044
name: dorsal root ganglion
def: "ganglion on the dorsal root of each spinal nerve that is one of a series of ganglia lodging cell bodies of sensory neurons[BTO]. Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves[..]. one on the posterior root of each spinal nerve, composed of unipolar nerve cell bodies of the sensory neurons of the nerve[FD]." [Wikipedia:Dorsal_root_ganglion]
comment: FMA treats dorsal root ganglion and spinal ganglion as equivalent labels. MA is the only ontology to introduce two classes here
subset: uberon_slim
synonym: "dorsal root ganglia" RELATED []
synonym: "dorsal root ganglion" EXACT []
synonym: "DRG" RELATED []
synonym: "ganglion of dorsal root" EXACT [OBOL:automatic]
synonym: "ganglion spinalis" EXACT []
synonym: "spinal ganglion" RELATED []
xref: BTO:0001264
xref: EFO:0000900
xref: EHDAA:2899
xref: EHDAA2:0000418
xref: FMA:5888
xref: HOG:0000222
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/DRG_Chicken_e7.jpg/200px-DRG_Chicken_e7.jpg
xref: MA:0000231
xref: MA:0000232
xref: MAT:0000162
xref: MIAA:0000162
xref: ncithesaurus:Dorsal_Root_Ganglion
xref: NIF_GrossAnatomy:birnlex_2596
xref: TAO:0000200
xref: XAO:0000210
xref: ZFA:0000200
is_a: UBERON:0001800 ! sensory ganglion
is_a: UBERON:0003339 ! implied link automatically realized ! ganglion of central nervous system
relationship: part_of UBERON:0002261
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0002261 ! dorsal root
relationship: develops_from UBERON:0003083 ! trunk neural crest
relationship: part_of UBERON:0002261 ! dorsal root
[Term]
id: UBERON:0000045
name: ganglion
alt_id: UBERON:FBbt_00005137-FMA_5884-FMA_5888-MA_0000232-MA_0002406-MIAA_0000162-MIAA_0000207-MIAA_0000343-WBbt_0005189-XAO_0000209-XAO_0000210-ZFA_0000190-ZFA_0000200
def: "A biological tissue mass, most commonly a mass of nerve cell bodies." [Wikipedia:Ganglion]
comment: TODO - check vert vs invert. Other species: Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system. // Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com). TODO: add epithelial capsule to definition? Always true?
subset: uberon_slim
synonym: "ganglia" RELATED []
xref: AEO:0000135
xref: BTO:0000497
xref: EFO:0000899
xref: EHDAA:2897
xref: EHDAA:4662
xref: EHDAA:5621
xref: EHDAA:918
xref: EHDAA2:0003135
xref: FBbt:00005137
xref: FMA:5884
xref: HOG:0000156
xref: MA:0002406
xref: MAT:0000207
xref: MAT:0000343
xref: MIAA:0000207
xref: MIAA:0000343
xref: ncithesaurus:Ganglion
xref: NIF_GrossAnatomy:nlx_anat_100302
xref: TAO:0000190
xref: WBbt:0005189
xref: XAO:0000209
xref: ZFA:0000190
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0000046
name: stemma
def: "eye-spots which may be set into a pit to reduce the angles of light that enters and affects the eyespot, to allow the organism to deduce the angle of incoming light" [Wikipedia:Eye#Pit_eyes, Wikipedia:Stemma]
subset: uberon_slim
synonym: "pit eye" EXACT [Wikipedia:Eye#Pit_eyes]
is_a: UBERON:0000047 ! simple eye
[Term]
id: UBERON:0000047
name: simple eye
def: "An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity." [Wikipedia:Eye#Simple_eyes]
subset: uberon_slim
is_a: UBERON:0000970 ! eye
[Term]
id: UBERON:0000048
name: pinhole eye
def: "Simple eye that has a small aperture (which may be adjustable) and deep pit. It is only found in the nautiloids." [DOI:10.1146/annurev.ne.15.030192.000245, Wikipedia:Pinhole_eye]
subset: uberon_slim
is_a: UBERON:0000047 ! simple eye
[Term]
id: UBERON:0000049
name: spherical lensed eye
def: "simple eye that consists of a lens of one refractive index" [Wikipepedia:Eye#Spherical_lensed_eye]
is_a: UBERON:0000047 ! simple eye
[Term]
id: UBERON:0000050
name: simple eye with multiple lenses
def: "simple eye that has two or more lenses. Some marine organisms bear more than one lens; for instance the copeopod Pontella has three. The outer has a parabolic surface, countering the effects of spherical aberration while allowing a sharp image to be formed. Copilla's eyes have two lenses, which move in and out like a telescope" [Wikipedia:Eye#Multiple_lenses]
subset: uberon_slim
is_a: UBERON:0000047 ! simple eye
relationship: has_part UBERON:0000965 ! lens
[Term]
id: UBERON:0000051
name: fornix of vagina
def: "There are three named fornices: The posterior fornix is the larger recess, behind the cervix. It is close to the rectouterine pouch. There are two smaller recesses in front and at the sides: the anterior fornix is close to the vesicouterine pouch. the lateral fornix. Some women receive enjoyment from stimulation of the fornices, while other women say that their fornices cannot be stimulated without stimulation of the cervix, which may be painful. The fornices appear to be close to at least two erogenous zones, the AFE zone, which is near the anterior fornix, and the cul-de-sac, which is near the posterior fornix. [WP,unvetted]." [Wikipedia:Fornix_vaginae]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fornix" BROAD []
synonym: "vaginal fornix" EXACT []
xref: FMA:19985
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png
xref: ncithesaurus:Vaginal_Fornix
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0000052
name: fornix of brain
def: "The fornix (Latin, 'vault' or 'arch') is a C-shaped bundle of fibres in the brain, and carries signals from the hippocampus to the mammillary bodies and septal nuclei. [WP,unvetted]." [Wikipedia:Fornix_of_brain]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "brain fornix" EXACT []
synonym: "fornix" BROAD []
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray747.png/200px-Gray747.png
xref: MA:0002747
xref: NIF_GrossAnatomy:birnlex_705
is_a: UBERON:0002437 ! cerebral white matter
[Term]
id: UBERON:0000053
name: macula lutea
def: "Oval yellow spot near the center of the retina of the human eye. It has a diameter of around 5 mm and is often histologically defined as having two or more layers of ganglion cells. Near its center is the fovea, a small pit that contains the largest concentration of cone cells in the eye and is responsible for central vision, and also contains the parafovea and perifovea." [Wikipedia:Macula_lutea]
subset: uberon_slim
synonym: "macula" RELATED []
synonym: "maculae" RELATED []
xref: BTO:0003015
xref: FMA:58637
xref: GAID:909
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Human_eye_cross-sectional_view_grayscale.png/200px-Human_eye_cross-sectional_view_grayscale.png
xref: MA:0001306
xref: ncithesaurus:Macula
xref: NIF_GrossAnatomy:birnlex_2540
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
disjoint_from: UBERON:0000054 ! macula
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0000054
name: macula
def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern." [:Macula_of_saccule, ZFIN:curator]
subset: uberon_slim
synonym: "macula" EXACT []
synonym: "maculae" EXACT PLURAL []
xref: ncithesaurus:Macula
xref: TAO:0000386
xref: ZFA:0000386
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0000055
name: vessel
def: "A tubular structure that contains, conveys body fluid, suchas blood or lymph." [UBERON:cjm]
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000056
name: ureter
def: "The ureter is one of a pair of thick-walled tubes that transports urine from the kidney pelvis to the urinary bladder[GO]. Muscular duct that propels urine from the kidneys to the urinary bladder, or related organs. In humans, organ with organ cavity which connects the renal sinus to the urinary bladder. Examples: There are only two ureters, the right and the left ureters." [Wikipedia:Ureter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001409
xref: EFO:0000930
xref: EHDAA:9341
xref: EHDAA2:0002139
xref: FMA:9704
xref: GAID:438
xref: galen:Ureter
xref: HOG:0000605
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Urinary_system.svg/200px-Urinary_system.svg.png
xref: MA:0000378
xref: MAT:0000120
xref: MIAA:0000120
xref: ncithesaurus:Ureter
xref: OpenCyc:Mx4rvhmm6JwpEbGdrcN5Y29ycA
xref: WBbt:0005777
xref: XAO:0000144
is_a: UBERON:0000062 ! organ
relationship: continuous_with UBERON:0001255 ! urinary bladder
relationship: continuous_with UBERON:0002113 ! kidney
[Term]
id: UBERON:0000057
name: urethra
def: "Organ with organ cavity which connects the cavity of the urinary bladder to the exterior. Examples: There is only one urethra." [Wikipedia:Urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001426
xref: EFO:0000931
xref: EMAPA:30901
xref: FMA:19667
xref: GAID:390
xref: galen:Urethra
xref: HOG:0001264
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png
xref: MA:0000379
xref: MAT:0000121
xref: MIAA:0000121
xref: ncithesaurus:Urethra
xref: OpenCyc:Mx4rvVjkypwpEbGdrcN5Y29ycA
xref: XAO:0000153
is_a: UBERON:0000062 ! organ
relationship: continuous_with UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0000058
name: duct
def: "A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171]
xref: FMA:30320
xref: galen:Duct
xref: HAO:0000282
xref: ncithesaurus:Duct
xref: ZFA:0005171
is_a: UBERON:0004111 ! anatomical conduit
[Term]
id: UBERON:0000059
name: large intestine
def: "The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal. Examples: There is only large intestine [FMA]." [Wikipedia:Large_intestine_(anatomy)]
xref: BTO:0000706
xref: EFO:0000840
xref: FMA:7201
xref: GAID:306
xref: galen:LargeIntestine
xref: HOG:0000054
xref: MA:0000333
xref: MIAA:0000046
xref: ncithesaurus:Large_Intestine
xref: OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA
xref: XAO:0000131
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0000160 ! intestine
[Term]
id: UBERON:0000060
name: anatomical wall
def: "anatomical structure with bona-fide boundary that functions as a barrier." [UBERON:cjm]
synonym: "wall" EXACT []
xref: galen:Wall
xref: ncithesaurus:Wall
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000061
name: anatomical structure
alt_id: UBERON:CARO_0000003-CARO_0000024-FBbt_00000001-FBbt_00007001-FMA_67135-FMA_67498-WBbt_0003760-WBbt_0007833-XAO_0003000-XAO_0003041-ZFA_0000037-ZFA_0000496-ZFA_0001094
def: "Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome." [CARO:0000003]
comment: This class was created automatically from a combination of ontologies
synonym: "biological structure" EXACT []
xref: AEO:0000003
xref: BILA:0000003
xref: CARO:0000003
xref: EHDAA2:0003003
xref: FBbt:00007001
xref: FMA:67135
xref: HAO:0000003
xref: TAO:0000037
xref: XAO:0003000
xref: ZFA:0000037
is_a: UBERON:0000465 ! material anatomical entity
[Term]
id: UBERON:0000062
name: organ
def: "Anatomical structure that performs a specific function or group of functions [WP]. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions[GO]." [Wikipedia:Organ_(anatomy)]
comment: More specific definition from CARO -- Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types.
xref: BILA:0000053
xref: CARO:0000024
xref: EFO:0000634
xref: FMA:67498
xref: HOG:0000671
xref: ncithesaurus:Organ
xref: NIF_GrossAnatomy:birnlex_4
xref: OpenCyc:Mx4rv5XMb5wpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rwP3iWpwpEbGdrcN5Y29ycA
xref: XAO:0003041
xref: ZFA:0000496
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000467 ! anatomical system
[Term]
id: UBERON:0000063
name: organ segment
def: "Organ region with one or more fixed or anchored fiat boundaries. Examples: artery, trunk of nerve, cervical part of esophagus, pelvic part of vagina, horn of thyroid cartilage, anterior segment of eyeball[FMA]." [FMA:86140]
xref: FMA:86140
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000064
name: organ part
def: "anatomical structure which has as its direct parts two or more types of tissue and is continuous with one or more anatomical structures likewise constituted by two or more portions of tissues distinct from those of their complement. Examples: osteon, cortical bone, neck of femur, bronchopulmonary segment, left lobe of liver, anterior right side of heart, interventricular branch of left coronary artery, right atrium, mitral valve, head of pancreas[FMA]." [FMA:82472]
synonym: "cardinal organ part" EXACT []
xref: EFO:0000635
xref: FMA:82472
is_a: UBERON:0000061 ! anatomical structure
disjoint_from: UBERON:0000062 ! organ
relationship: part_of UBERON:0000062 ! organ
[Term]
id: UBERON:0000065
name: respiratory tract
def: "anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [UBERON:cjm]
xref: EHDAA:1568
xref: EHDAA:2219
xref: EHDAA2:0001606
xref: HOG:0000393
xref: OpenCyc:Mx4rvvM--pwpEbGdrcN5Y29ycA
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: develops_from UBERON:0000925 ! endoderm
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0000066
name: fully formed stage
def: "The stage of development at which the animal is fully formed, including immaturity and maturity. Includes both juvenile stage, and adult stage. " [UBERON:cjm]
synonym: "adult stage" BROAD []
synonym: "fully formed animal stage" EXACT []
synonym: "juvenile-adult stage" EXACT []
xref: FBdv:00005369
xref: WBls:0000041
xref: XAO:1000009
is_a: UBERON:0000092 ! post-embryonic stage
relationship: preceded_by UBERON:0000111 ! organogenesis stage
[Term]
id: UBERON:0000067
name: embryo stage part
def: "A stage that is part of the embryo stage." [UBERON:cjm]
synonym: "embryonic stage part" EXACT []
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068
intersection_of: UBERON:0000105 ! life cycle stage
intersection_of: part_of UBERON:0000068 ! embryo stage
relationship: part_of UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0000068
name: embryo stage
def: "A life cycle stage that starts with fertilization and ends with the fully formed embryo." []
synonym: "embryogenesis" RELATED []
synonym: "embryonic stage" EXACT []
xref: FBdv:00005289
xref: XAO:1000012
is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000104 ! life cycle
[Term]
id: UBERON:0000069
name: larval stage
def: "a distinct juvenile stage many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle." [Wikipedia:Larva]
comment: It is a misunderstanding that the larval form always reflects the group's evolutionary history. It could be the case, but often the larval stage has evolved secondarily, as in insects. In these cases the larval form might differ more from the group's common origin than the adult form[WP]. Uberon includes clade-specific subclasses.
synonym: "ammocoete" NARROW SENSU [Wikipedia:Larva]
synonym: "ammocoete stage" NARROW SENSU [Wikipedia:Larva]
synonym: "bipinnaria" NARROW SENSU [Wikipedia:Larva]
synonym: "bipinnaria stage" NARROW SENSU [Wikipedia:Larva]
synonym: "caterpillar" NARROW SENSU [Wikipedia:Larva]
synonym: "caterpillar stage" NARROW SENSU [Wikipedia:Larva]
synonym: "glochidium" NARROW SENSU [Wikipedia:Larva]
synonym: "glochidium stage" NARROW SENSU [Wikipedia:Larva]
synonym: "grub" NARROW SENSU [Wikipedia:Larva]
synonym: "grub stage" NARROW SENSU [Wikipedia:Larva]
synonym: "larva" RELATED []
synonym: "larva stage" EXACT []
synonym: "leptocephalus" NARROW SENSU [Wikipedia:Larva]
synonym: "leptocephalus stage" NARROW SENSU [Wikipedia:Larva]
synonym: "maggot" NARROW SENSU [Wikipedia:Larva]
synonym: "maggot stage" NARROW SENSU [Wikipedia:Larva]
synonym: "naiad, nymph" NARROW SENSU [Wikipedia:Larva]
synonym: "naiad, nymph stage" NARROW SENSU [Wikipedia:Larva]
synonym: "nauplius" NARROW SENSU [Wikipedia:Larva]
synonym: "nauplius stage" NARROW SENSU [Wikipedia:Larva]
synonym: "nymph" NARROW SENSU [Wikipedia:Larva]
synonym: "nymph stage" NARROW SENSU [Wikipedia:Larva]
synonym: "planula" NARROW SENSU [Wikipedia:Larva]
synonym: "planula stage" NARROW SENSU [Wikipedia:Larva]
synonym: "trochophore" NARROW SENSU [Wikipedia:Larva]
synonym: "trochophore stage" NARROW SENSU [Wikipedia:Larva]
synonym: "veliger" NARROW SENSU [Wikipedia:Larva]
synonym: "veliger stage" NARROW SENSU [Wikipedia:Larva]
synonym: "wriggler" NARROW SENSU [Wikipedia:Larva]
synonym: "wriggler stage" NARROW SENSU [Wikipedia:Larva]
synonym: "zoea" NARROW SENSU [Wikipedia:Larva]
synonym: "zoea stage" NARROW SENSU [Wikipedia:Larva]
xref: EFO:0001303
is_a: UBERON:0000092 ! post-embryonic stage
relationship: directly_preceded_by UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0000070
name: pupal stage
def: "A life stage of some insects undergoing transformation. The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago." [Wikipedia:Pupa]
synonym: "pupa stage" EXACT []
xref: FBdv:00005349
is_a: UBERON:0000092 ! post-embryonic stage
relationship: directly_preceded_by UBERON:0000069 ! larval stage
[Term]
id: UBERON:0000071
name: death stage
def: "End of the life of an organism." [XAO:0000437]
synonym: "death" EXACT []
xref: ncithesaurus:Death
xref: XAO:0000437
is_a: UBERON:0000105 ! life cycle stage
relationship: finishes UBERON:0000104 ! life cycle
relationship: part_of UBERON:0000104 ! life cycle
[Term]
id: UBERON:0000072
name: segment of respiratory tract
def: "An organ segment that is part of a respiratory tract [Obol]." [OBOL:automatic]
xref: MA:0000434
is_a: UBERON:0000063 ! implied link automatically realized ! organ segment
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0000065
intersection_of: UBERON:0000063 ! organ segment
intersection_of: part_of UBERON:0000065 ! respiratory tract
[Term]
id: UBERON:0000073
name: regional part of nervous system
def: "An anatomical structure that is part of a nervous system [Obol]." [OBOL:automatic]
comment: grouping class
xref: NIF_GrossAnatomy:birnlex_1157
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001016
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: part_of UBERON:0001016 ! nervous system
created_by: Melissa Haendel
creation_date: 2009-06-18T09:00:04Z
[Term]
id: UBERON:0000074
name: renal glomerulus
def: "A capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the vertebrate kidney[GO]." [MP:0005325, Wikipedia:Glomerulus]
comment: ZFA - The multi-tissue structure where the glomerular basement membrane supported by mesonephric podocytes filters blood from the glomerular capillaries. TODO - split glomerulus and glomerular tuft? DONE. GUDMAP: 'Together, the Bowman’s capsule and the glomerulus comprise the definitive renal corpuscle.' - here the glomerulus is part of the capsule?
synonym: "glomerular tuft" RELATED []
synonym: "glomerulus" BROAD []
synonym: "renal corpuscle" RELATED []
xref: BTO:0000530
xref: FMA:15624
xref: http://upload.wikimedia.org/wikipedia/commons/2/22/Renal_corpuscle.svg
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1130.svg/200px-Gray1130.svg.png
xref: MA:0001657
xref: XAO:0000146
xref: ZFA:0001288
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0005749 ! glomerular tuft
relationship: part_of UBERON:0001229 ! renal corpuscle
relationship: surrounded_by UBERON:0001230 ! glomerular capsule
created_by: Melissa Haendel
creation_date: 2009-06-18T09:26:37Z
[Term]
id: UBERON:0000075
name: subdivision of skeletal system
comment: note we consciously merge the two FMA classes below
synonym: "skeletal system part" RELATED []
synonym: "skeleton part" RELATED []
synonym: "subdivision of skeleton" RELATED []
xref: FMA:23879
xref: FMA:85544
xref: galen:ComplexSkeletalStructure
is_a: UBERON:0000480 ! anatomical group
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001434 ! skeletal system
created_by: cjm
creation_date: 2009-07-30T03:53:53Z
[Term]
id: UBERON:0000076
name: external ectoderm
def: "The surface ectoderm (or external ectoderm forms the following structures: Skin Epithelium of the mouth and nasal cavity saliavary glands, and glands of mouth and nasal cavity Enamel - as a side note dentin and dental pulp are formed from ectomesenchyme which is derived from ectoderm Epithelium of pineal and pituitary glands Lens and cornea of the eye Apical ectodermal ridge inducing development of the limb buds of the embryo. Sensory receptors in epidermis [WP,unvetted]." [Wikipedia:External_ectoderm]
comment: In vertebrates, the ectoderm has three parts: external ectoderm (also known as surface ectoderm), the neurectoderm (neural crest, and neural tube).
synonym: "surface ectoderm" EXACT []
xref: EHDAA:1494
xref: EHDAA:350
xref: EHDAA:4784
xref: EHDAA:4790
xref: EHDAA:4796
xref: EHDAA:7860
xref: EHDAA2:0001968
xref: FMA:87656
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1d/Ectoderm.png/200px-Ectoderm.png
xref: ncithesaurus:Surface_Ectoderm
is_a: UBERON:0000923 ! germ layer
is_a: UBERON:0005085 ! implied link automatically realized ! ectodermal placode
relationship: part_of UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0000077
name: mixed endoderm/mesoderm-derived structure
def: "An anatomical structure that develops from the endoderm and the mesoderm." [UBERON:cjm]
comment: Grouping term for query purposes.
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0000925
relationship: develops_from UBERON:0000926
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000925 ! endoderm
intersection_of: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0000078
name: mixed ectoderm/mesoderm/endoderm-derived structure
def: "An anatomical structure that develops from the ectoderm, mesoderm and endoderm." [UBERON:cjm]
comment: Grouping term for query purposes
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0000924
relationship: develops_from UBERON:0000925
relationship: develops_from UBERON:0000926
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000924 ! ectoderm
intersection_of: develops_from UBERON:0000925 ! endoderm
intersection_of: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0000079
name: male reproductive system
def: "the masculine organs of reproduction or generation, external or internal." [MP:0001145, MP:0009198]
synonym: "genitalia of male organism" EXACT [OBOL:automatic]
synonym: "male genitalia" EXACT []
synonym: "male genitals" EXACT []
synonym: "male organism genitalia" EXACT [OBOL:automatic]
synonym: "male organism reproductive system" EXACT [OBOL:automatic]
synonym: "reproductive system of male organism" EXACT [OBOL:automatic]
xref: BTO:0000082
xref: EFO:0000970
xref: EHDAA2:0001054
xref: FBbt:00004828
xref: GAID:386
xref: HAO:0000505
xref: HOG:0000725
xref: MA:0000396
xref: ncithesaurus:Male_Reproductive_System
xref: OpenCyc:Mx4rvViCepwpEbGdrcN5Y29ycA
xref: XAO:0000155
is_a: UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0003101
intersection_of: UBERON:0000990 ! reproductive system
intersection_of: part_of UBERON:0003101 ! male organism
disjoint_from: UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0003101 ! male organism
[Term]
id: UBERON:0000080
name: mesonephros
def: "In mammals, the mesonephros is the second of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the mesonephros will form the mature kidney[GO]. One of three excretory organs that develop in vertebrates. It serves as the main excretory organ of aquatic vertebrates and as a temporary kidney in higher vertebrates. composed of the mesonephric duct (also called the Wolffian duct), mesonephric tubules, and associated capillary tufts. A single tubule and its associated capillary tuft is called a mesonephric excretory unit; these units are similar in structure and function to nephrons of the adult kidney. The mesonephros is derived from intermediate mesoderm in the vertebrate embryo." [GO:0001823, Wikipedia:Mesonephros]
comment: By contrast to the pronephros, the histological features of the mesonephros, with its primitive glomeruli, suggest that it probably functions as a primitive kidney, and is involved in the production of much of the amniotic fluid. Within the two mesonephroi, one located on either side of the dorsal mesentery of the hindgut, a substantial number (in the region of about 40 or more) of cranio-caudally segmented mesonephric tubules are formed. It has, however, been suggested that only the most rostrally located 4-6 pairs of mesonephric tubules drain into the mesonephric portion of the nephric duct. This is now seen to extend along the length of the mesonephroi, being located towards their lateral sides. The mesonephros is also retained over a considerably longer period than the pronephros, but gradually undergoes regression in a cranio-caudal direction. While the rostral part displays clear evidence of regression its more caudal part appears to display evidence of functional activity. Within the medial part of the mesonephros, vesicles are formed, although no glomeruli are formed there in this species. It is, however, difficult to believe that the relatively enormous mesonephroi do not have an excretory role in the mouse, only serving as a base for gonadal differentiation. In the human embryo, the medial part of the mesonephric tubules enlarges, become invaginated by capillaries, and form glomeruli. These then take on an excretory role. In the mouse, the mesonephric ducts appear to be patent throughout their length[GUDMAP]
synonym: "mesonephroi" EXACT PLURAL [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron]
synonym: "opisthonephros" RELATED [HOG:0000038, XAO:0000141]
synonym: "opisto nephros" RELATED []
synonym: "opistonephros" RELATED [http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html]
xref: EFO:0000928
xref: EHDAA:1581
xref: EHDAA:5903
xref: EHDAA2:0001130
xref: FMA:72171
xref: GAID:1308
xref: HOG:0000038
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ad/Gray986.png/200px-Gray986.png
xref: ncithesaurus:Mesonephros
xref: XAO:0000141
xref: ZFA:0000529
is_a: UBERON:0002113 ! kidney
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0002120 ! pronephros
[Term]
id: UBERON:0000081
name: metanephros
def: "In mammals, the metanephros is the excretory organ of the fetus, which develops into the mature kidney and is formed from the rear portion of the nephrogenic cord. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine[GO]. During the fifth week of gestation, the mesonephric duct develops an outpouching, the ureteric bud, near its attachment to the cloaca. This bud, also called the metanephrogenic diverticulum, grows posteriorly and towards the head of the embryo. The elongated stalk of the ureteric bud, the metanephric duct, later forms the ureter. As the cranial end of the bud extends into the intermediate mesoderm, it undergoes a series of branchings to form the collecting duct system of the kidney. It also forms the major and minor calyces and the renal pelvis." [GO:0001656, Wikipedia:Metanephros#Metanephros]
comment: TODO check developmental relationships
xref: BTO:0001543
xref: EHDAA:3089
xref: EHDAA:5911
xref: EHDAA2:0001137
xref: FMA:72172
xref: HOG:0000039
xref: ncithesaurus:Metanephros
is_a: UBERON:0002113 ! kidney
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0000080 ! mesonephros
relationship: develops_from UBERON:0005753 ! caudal part of nephrogenic cord
[Term]
id: UBERON:0000082
name: adult mammalian kidney
is_a: UBERON:0002113 ! kidney
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0000081 ! metanephros
relationship: develops_from UBERON:0000084 ! ureteric bud
[Term]
id: UBERON:0000083
name: mesonephric tubule
def: "A mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]. Genital ridge that is next to the mesonephros[WP]." [Wikipedia:Mesonephric_tubules]
comment: TODO check
xref: HOG:0000500
xref: XAO:0000148
is_a: UBERON:0003914 ! implied link automatically realized ! epithelial tube
is_a: UBERON:0005103 ! implied link automatically realized ! mesonephric epithelium
relationship: part_of UBERON:0000080
intersection_of: UBERON:0003914 ! epithelial tube
intersection_of: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0000084
name: ureteric bud
def: "a protrusion from the mesonephric duct during the development of the urinary and reproductive organs. It later develops into the adult kidney, except for the nephrons, which, in contrast, originate from the metanephric blastema." [Wikipedia:Ureteric_bud]
synonym: "metanephric diverticulum" RELATED []
xref: BTO:0001646
xref: EHDAA:3091
xref: EHDAA:5917
xref: EHDAA2:0002140
xref: HOG:0000541
is_a: UBERON:0000083 ! implied link automatically realized ! mesonephric tubule
is_a: UBERON:0003914 ! epithelial tube
relationship: part_of UBERON:0003074 ! mesonephric duct
[Term]
id: UBERON:0000085
name: morula
def: "An embryo at an early stage of embryonic development, consisting of cells (called blastomeres) in a solid ball contained within the zona pellucida." [Wikipedia:Morula]
xref: BTO:0001508
xref: GAID:1295
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Blastulation.png/200px-Blastulation.png
xref: ncithesaurus:Morula
is_a: UBERON:0000922 ! embryo
relationship: existence_starts_and_ends_during UBERON:0000108 ! blastula stage
relationship: surrounded_by UBERON:0000086 ! zona pellucida
[Term]
id: UBERON:0000086
name: zona pellucida
def: "A glycoprotein membrane surrounding the plasma membrane of an oocyte. It is a vital constitutive part of the latter, external but not extraneous to it. The zona pellucida first appears in multilaminar primary oocytes." [Wikipedia:Zona_pellucida]
synonym: "vitelline membrane" RELATED []
xref: BTO:0003135
xref: EHDAA:31
xref: EHDAA:62
xref: EHDAA2:0002220
xref: FMA:18674
xref: GAID:410
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray3.png/200px-Gray3.png
xref: MA:0001715
xref: ncithesaurus:Zona_Pellucida
is_a: UBERON:0000476 ! acellular anatomical structure
[Term]
id: UBERON:0000087
name: inner cell mass
def: "Mass of cells inside the primordial embryo that will eventually give rise to the definitive structures of the fetus. This structure forms in the earliest steps of development, before implantation into the endometrium of the uterus has occurred. The ICM lies within the blastocoele (more correctly termed 'blastocyst cavity', as it is not strictly homologous to the blastocoele of anamniote vertebrates) and is entirely surrounded by the single layer of cells called trophoblast." [Wikipedia:Inner_cell_mass]
synonym: "embryoblast" RELATED []
synonym: "pluriblast" RELATED []
xref: EFO:0000547
xref: EHDAA:40
xref: EHDAA2:0000830
xref: FMA:86557
xref: HOG:0000742
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png
xref: ncithesaurus:Inner_Cell_Mass
is_a: UBERON:0002050 ! embryonic structure
relationship: surrounded_by UBERON:0000088 ! trophoblast
[Term]
id: UBERON:0000088
name: trophoblast
def: "Aggregate of cells forming the outer layer of a blastocyst, which provide nutrients to the embryo and develop into a large part of the placenta. They are formed during the first stage of pregnancy and are the first cells to differentiate from the fertilized egg." [Wikipedia:Trophoblast]
synonym: "trophoblast layer" RELATED [MP:0005031]
xref: BTO:0001079
xref: FMA:83029
xref: GAID:1152
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000089
name: hypoblast
def: "The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm. Kimmel et al, 1995." [Wikipedia:Hypodermis, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hypoblast" EXACT []
synonym: "mesendoderm" RELATED []
xref: AAO:0000229
xref: EFO:0001930
xref: EHDAA2:0000796
xref: HOG:0001222
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png
xref: MAT:0000418
xref: MIAA:0000418
xref: ncithesaurus:Hypoblast
xref: TAO:0000117
xref: XAO:0003044
xref: ZFA:0000117
is_a: UBERON:0002050 ! embryonic structure
relationship: adjacent_to UBERON:0002532 ! epiblast
relationship: develops_from UBERON:0000087 ! inner cell mass
relationship: part_of UBERON:0000091 ! bilaminar disc
[Term]
id: UBERON:0000090
name: blastocele
def: "fluid-filled central region of a blastocyst. A blastocoele forms during embryogenesis when a zygote (a fertilized ovum) divides into many cells through mitosis." [Wikipedia:Blastocele]
synonym: "blastocoele" EXACT []
synonym: "blastocoelic cavity" EXACT [EHDAA2:0000175]
synonym: "blastocyst cavity" RELATED []
synonym: "cleavage cavity" EXACT []
synonym: "segmentation cavity" EXACT []
xref: EHDAA2:0000175
xref: EMAPA:16044
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Blastocyst.gif/200px-Blastocyst.gif
xref: XAO:0000294
is_a: UBERON:0002553 ! anatomical cavity
relationship: surrounded_by UBERON:0002532 ! epiblast
[Term]
id: UBERON:0000091
name: bilaminar disc
def: "the epiblast and the hypoblast, evolved from the embryoblast" [Wikipedia:Bilaminar_disc]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Gray21.png/200px-Gray21.png
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0000087 ! inner cell mass
[Term]
id: UBERON:0000092
name: post-embryonic stage
def: "stage succeeding embryo, including mature structure" [UBERON:cjm]
synonym: "postembryonic" RELATED []
synonym: "postembryonic stage" EXACT []
xref: WBls:0000022
is_a: UBERON:0000105 ! life cycle stage
disjoint_from: UBERON:0000068 ! embryo stage
relationship: part_of UBERON:0000104 ! life cycle
relationship: preceded_by UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0000093
name: sulcus
def: "a depression or fissure in the surface of an organ." [Wikipedia:Sulcus_(anatomy)]
is_a: UBERON:0000464 ! anatomical space
created_by: cjm
creation_date: 2009-04-09T06:23:22Z
[Term]
id: UBERON:0000094
name: membrane organ
def: "Nonparenchymatous organ that primarily consists of dense connective tissue organized into a sheet which interconnects two or more organs, separates two or more body spaces from one another, or surrounds an organ or body part. Examples: interosseous membrane of forearm, obturator membrane, tympanic membrane, fibrous pericardium, fascia lata, dura mater. [FMA]" [FMA:7145]
synonym: "membrane of organ" EXACT []
xref: FMA:7145
is_a: UBERON:0000062 ! organ
created_by: cjm
creation_date: 2009-07-30T05:19:13Z
[Term]
id: UBERON:0000095
name: cardiac neural crest
def: "portion of neural crest that develops from the dorsal neural tube. It overlaps the vagal neural crest and migrates to populate the pharyngeal arches 3, 4 and 6 (producing structures in the head) and to the heart, forming connective tissue that separates the great vessels of the heart. [Wikipedia]" [Wikipedia:Cardiac_neural_crest]
xref: ZFA:0001648
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: overlaps UBERON:0005428 ! vagal neural crest
relationship: part_of UBERON:0002342 ! neural crest
created_by: cjm
creation_date: 2009-07-30T07:57:38Z
[Term]
id: UBERON:0000100
name: blastopore
def: "Structure around the opening into the archenteron during the embryonic stages of an organism. The distinction between protostomes and deuterostomes is based on the direction in which the mouth (stoma) develops in relation to the blastopore." [Wikipedia:Blastopore]
xref: AAO:0000045
xref: BTO:0001695
xref: XAO:0000208
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0004735 ! archenteron
[Term]
id: UBERON:0000101
name: lobe of lung
def: "A lung lobe is one of the rounded projections that compose the lung[GO]." [GOC:GO]
synonym: "lung lobe" EXACT []
synonym: "pulminory lobe" EXACT []
xref: FMA:7311
xref: galen:LobeOfLung
xref: ncithesaurus:Lung_Lobe
xref: OpenCyc:Mx4rvo6-vpwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0000102
name: lung vasculature
def: "The lung vasculature is composed of the tubule structures that carry blood or lymph in the lungs[GO]." [GOC:GO]
synonym: "lung vascular network" EXACT [OBOL:automatic]
synonym: "vascular network of lung" EXACT [OBOL:automatic]
synonym: "vasculature of lung" EXACT [OBOL:automatic]
xref: FMA:73750
is_a: UBERON:0002049 ! vasculature
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002048
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0000103
name: life cycle stage boundary
def: "Instant starting or ending a life cycle stage. These can be arbitrary/fiat." [UBERON:cjm]
synonym: "life cycle stage transition event" EXACT []
synonym: "life cycle stage transition instant" EXACT []
xref: span:ProcessBoundary
is_a: UBERON:0000000 ! processual entity
disjoint_from: UBERON:0000105 ! life cycle stage
[Term]
id: UBERON:0000104
name: life cycle
def: "An entire span of an organism's life, commencing with the zygote stage and ending in the death of the organism." [UBERON:cjm]
synonym: "life" EXACT []
synonym: "lifespan" EXACT []
xref: FBdv_root:00000000
xref: ncithesaurus:Life
is_a: UBERON:0000105 ! life cycle stage
[Term]
id: UBERON:0000105
name: life cycle stage
def: "A spatiotemporal region encompassing some part of the life cycle of an organism." [UBERON:cjm]
synonym: "developmental stage" EXACT []
synonym: "stage" NARROW []
xref: BILS:0000105
xref: EFO:0000399
xref: ncithesaurus:Developmental_Stage
xref: WBls:0000002
xref: XAO:1000000
xref: ZFS:0100000
is_a: UBERON:0000000 ! processual entity
relationship: has_end UBERON:0000103 ! life cycle stage boundary
relationship: has_start UBERON:0000103 ! life cycle stage boundary
[Term]
id: UBERON:0000106
name: zygote stage
def: "A stage at which the organism is a single cell produced by means of sexual reproduction." [Wikipedia:Zygote]
synonym: "one cell stage" RELATED []
xref: BILS:0000106
xref: HOG:0000745
xref: ZFS:0000001
is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: starts UBERON:0000104 ! life cycle
[Term]
id: UBERON:0000107
name: cleavage stage
def: "The first few specialized divisions of an activated animal egg. // Stage consisting of division of cells in the early embryo. The zygotes of many species undergo rapid cell cycles with no significant growth, producing a cluster of cells the same size as the original zygote. The different cells derived from cleavage are called blastomeres and form a compact mass called the morula. Cleavage ends with the formation of the blastula." [GO:0040016, Wikipedia:Cleavage_(embryo)]
xref: BILS:0000107
xref: EFO:0001290
xref: XAO:1000004
is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000106 ! zygote stage
[Term]
id: UBERON:0000108
name: blastula stage
def: "An early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula]
xref: BILS:0000108
xref: EFO:0001282
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Blastulation.png/200px-Blastulation.png
xref: OGES:000003
xref: OGES:000016
xref: OGES:000021
xref: XAO:1000003
is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000107 ! cleavage stage
[Term]
id: UBERON:0000109
name: gastrula stage
def: "A stage defined by complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm." [GO:0007369]
xref: BILS:0000109
xref: EFO:0001296
xref: FBdv:00005317
xref: XAO:1000005
is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000108 ! blastula stage
[Term]
id: UBERON:0000110
name: neurula stage
def: "Staged defined by the formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system." [GO:0001841]
xref: BILS:0000110
xref: XAO:1000006
is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000109 ! gastrula stage
[Term]
id: UBERON:0000111
name: organogenesis stage
def: "A stage at which the ectoderm, endoderm, and mesoderm develop into the internal organs of the organism." [Wikipedia:Organogenesis]
synonym: "segmentation stage" RELATED []
xref: BILS:0000111
is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000110 ! neurula stage
[Term]
id: UBERON:0000112
name: juvenile stage
def: "The stage of being a sexually immature adult animal." [XAO:1000010]
xref: BILS:0000112
xref: EFO:0001300
xref: XAO:1000010
xref: ZFS:0000042
xref: ZFS:0000043
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000066 ! fully formed stage
[Term]
id: UBERON:0000113
name: post-juvenile adult stage
alt_id: UBERON:MIAA_0000403-XAO_1000009
def: "The stage of being a sexually mature adult animal." [UBERON:cjm]
synonym: "adult stage" BROAD []
xref: BILS:0000113
xref: MIAA:0000403
xref: XAO:1000009
xref: ZFS:0000044
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000066 ! fully formed stage
relationship: preceded_by UBERON:0000112 ! juvenile stage
[Term]
id: UBERON:0000114
name: lung connective tissue
def: "A portion of connective tissue that is part of a lung [Obol]." [OBOL:automatic]
synonym: "connective tissue of lung" EXACT [OBOL:automatic]
synonym: "lung portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lung textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lung" EXACT [OBOL:automatic]
synonym: "textus connectivus of lung" EXACT [OBOL:automatic]
xref: MA:0001782
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue
is_a: UBERON:0003593 ! implied link automatically realized ! thoracic cavity connective tissue
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002048
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0000115
name: lung epithelium
def: "the epithelial layer of the lung." [MP:0006382]
synonym: "epithelial tissue of lung" EXACT [OBOL:automatic]
synonym: "epithelium of lung" EXACT [OBOL:automatic]
synonym: "lung epithelial tissue" EXACT [OBOL:automatic]
xref: BTO:0001653
xref: MA:0001783
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium
is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium
relationship: part_of UBERON:0002048
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002048 ! lung
relationship: develops_from UBERON:0001041 ! foregut
[Term]
id: UBERON:0000116
name: lung saccule
def: "Primitive gas exchange portion of the lung composed of type I and type II cells[GO]." [GO:0060430]
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0000117
name: respiratory tube
def: "A tube in the respiratory tract." [GO:0030323]
synonym: "apparatus respiratorius tube" EXACT [OBOL:automatic]
synonym: "respiratory system tube" EXACT [OBOL:automatic]
synonym: "tube of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "tube of respiratory system" EXACT [OBOL:automatic]
is_a: UBERON:0000025 ! tube
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001004
intersection_of: UBERON:0000025 ! tube
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0000065 ! respiratory tract
[Term]
id: UBERON:0000118
name: lung bud
def: "Structure derived from foregut that becomes a lung." [GO:0060431, Wikipedia:Lung_buds]
synonym: "primary lung bud" EXACT []
xref: BTO:0001643
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/Gray948.png/200px-Gray948.png
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: develops_from UBERON:0003258 ! endoderm of foregut
[Term]
id: UBERON:0000119
name: cell layer
def: "Portion of tissue, that consists of one or more layers of cells connected to each other by cell junctions" [UBERON:cjm]
synonym: "cell sheath" RELATED []
synonym: "layer of cells" EXACT []
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0000120
name: blood brain barrier
def: "Cell layer consisting of lining cells that separates the central nervous system and the bloodstream. The BBB may consist of endothelial cells or glial cells. An endothelial barrier may have arisen independently several times during evolution. In bichir and lungfish the barrier is formed by brain endothelial cells, while in sturgeon it is formed by a complex perivascular glial sheath, but with no detectable tight junctions." [DOI:10.1002/glia.20642, Wikipedia:Blood-brain_barrier]
synonym: "BBB" RELATED []
synonym: "blood-brain barrier" EXACT []
xref: ncithesaurus:Blood-Brain_Barrier
xref: NIF_Subcellular:nlx_subcell_100205
is_a: UBERON:0000119 ! cell layer
relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid
relationship: adjacent_to UBERON:0000955 ! brain
[Term]
id: UBERON:0000121
name: perineurium
def: "Connective tissue surrounding a fascicle." [Wikipedia:Perineurium]
xref: BTO:0003153
xref: FMA:52585
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray636.png/200px-Gray636.png
xref: ncithesaurus:Perineurium
xref: NIF_GrossAnatomy:nlx_anat_090205
is_a: UBERON:0002384 ! connective tissue
relationship: surrounds UBERON:0001019 ! fascicle
[Term]
id: UBERON:0000122
name: neuron projection bundle
alt_id: UBERON:0005163
def: "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." [FBbt:00005099, FBC:DOS]
comment: TODO - check FMA is general anatomical term
synonym: "funiculus" EXACT []
synonym: "nerve fiber bundle" EXACT [FBbt:00005099]
xref: CARO:0001001
xref: FBbt:00005099
xref: FMA:76738
is_a: UBERON:0005162 ! multi-cell-component structure
relationship: has_part UBERON:0001021 ! nerve
[Term]
id: UBERON:0000123
name: endodeurium
def: "a layer of delicate connective tissue that encloses the myelin sheath of a nerve fiber within a funiculus." [Wikipedia:Endodeurium]
xref: FMA:52586
is_a: UBERON:0002384 ! connective tissue
relationship: surrounds UBERON:0001021 ! nerve
[Term]
id: UBERON:0000124
name: epineurium
def: "outermost layer of connective tissue surrounding a peripheral nerve. It includes the blood vessels supplying the nerve. It consists of adipose tissue and fibrocollagenous tissues." [Wikipedia:Epineurium]
xref: BTO:0003154
xref: FMA:12234
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray636.png/200px-Gray636.png
xref: ncithesaurus:Epineurium
xref: NIF_GrossAnatomy:nlx_anat_090203
is_a: UBERON:0002384 ! connective tissue
relationship: surrounds UBERON:0002003 ! peripheral nerve
[Term]
id: UBERON:0000125
name: neural nucleus
def: "Anatomical structure consisting of a discrete aggregate of neuronal soma[GO]." [GO:0048857, GO_REF:0000021, Wikipedia:Nucleus_(neuroanatomy)]
comment: do not include NIF_Subcellular:sao1702920020 Nucleus. Proposed CUMBO def from MM: A subcortical part of the nervous system consisting of a relatively compact group of cells that is distinguishable histologically that share a commonality of cytoarchitecture, chemoarchitecturel and connectivity. (comments: I put in "subcortical" because I don't think we consider either the cerebellar cortex or cerebral cortex to be nuclei. Some people distinguish between a nucleus and a laminar structure (see Wikipedia definition). However, there are structures identified as nuclei that are laminar, e.g., lateral geniculate nucleus, although they are not laminated in all species. Also, I put in "relatively compact" and "distiguishable by histology" because we have groups of cells, e.g., cholinergic cell groups, doparminergic cell groups that are related on the 3 criteria but which we don't tend to consider nuclei because they don't occupy an easily defined territory. But all is open to debate.
synonym: "nucleus" BROAD []
synonym: "nucleus of neuraxis" RELATED []
xref: FMA:83686
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0000126
name: cranial nerve nucleus
def: "collection of neurons (gray matter) in the brain stem that is associated with one or more cranial nerves." [Wikipedia:Cranial_nerve_nucleus]
synonym: "brain nucleus of cranial nerve" EXACT [OBOL:automatic]
synonym: "brain nucleus of cranial neural tree organ" EXACT [OBOL:automatic]
synonym: "cranial nerve brain nucleus" EXACT [OBOL:automatic]
synonym: "cranial nerve nucleus of brain" EXACT [OBOL:automatic]
synonym: "cranial neural tree organ brain nucleus" EXACT [OBOL:automatic]
synonym: "cranial neural tree organ nucleus of brain" EXACT [OBOL:automatic]
synonym: "nucleus of brain of cranial nerve" EXACT [OBOL:automatic]
synonym: "nucleus of brain of cranial neural tree organ" EXACT [OBOL:automatic]
synonym: "nucleus of cranial nerve" EXACT []
xref: FMA:54501
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png
is_a: UBERON:0002308 ! nucleus of brain
relationship: overlaps UBERON:0001785
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: overlaps UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0000127
name: facial nucleus
comment: FMA has 3 subclasses - left, right and motor nucleus of facial nerve, but no defs. It's not clear how facial motor nucleus is distinct from facial motor nucleus.
synonym: "facial nerve nucleus" EXACT []
synonym: "facial VII nucleus" EXACT [MA:0001014]
xref: FMA:54572
xref: HOG:0001412
xref: MA:0001014
xref: ncithesaurus:Facial_Nerve_Nucleus
is_a: UBERON:0000126 ! cranial nerve nucleus
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0000128
name: olivary body
def: "prominent oval structure in the medulla oblongata, present in pairs, the lower portion of the brainstem. They contain the olivary nuclei" [Wikipedia:Olivary_body]
synonym: "olive" RELATED []
synonym: "olive body" EXACT []
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray679.png/200px-Gray679.png
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0000151
name: pectoral fin
def: "The paired pectoral fins are located on each side, usually just behind the operculum, and are homologous to the forelimbs of tetrapods." [Wikipedia:Pectoral_fin#Fins]
comment: check definition of limb such that is excludes fins. Note the GO includes pectoral and pelvic fins as types of limbs. The Actinopterygii (ray finned fish) pectoral and pelvic fins aren't homologous as fore- or hindlimbs to those of tetrapods, whereas those of the Sarcopterygii (lobe finned fish) are in fact homologous.
xref: TAO:0001161
xref: ZFA:0001161
is_a: UBERON:0002534 ! fin
is_a: UBERON:0004710 ! implied link automatically realized ! limb/fin of anterior region of body
relationship: part_of UBERON:0000153 ! anterior region of body
[Term]
id: UBERON:0000152
name: pelvic fin
def: "The paired pelvic or ventral fins are located ventrally below the pectoral fins. They are homologous to the hindlimbs of tetrapods. The pelvic fin assists the fish in going up or down through the water, turning sharply, and stopping quickly." [Wikipedia:Pectoral_fin#Fins]
comment: check definition of limb such that is excludes fins. Note the GO includes pectoral and pelvic fins as types of limbs. The Actinopterygii (ray finned fish) pectoral and pelvic fins aren't homologous as fore- or hindlimbs to those of tetrapods, whereas those of the Sarcopterygii (lobe finned fish) are in fact homologous.
xref: TAO:0001184
xref: ZFA:0001184
is_a: UBERON:0002534 ! fin
is_a: UBERON:0004709 ! implied link automatically realized ! limb/fin of posterior region of body
relationship: part_of UBERON:0000154 ! posterior region of body
[Term]
id: UBERON:0000153
name: anterior region of body
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000154
name: posterior region of body
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000155
name: theca cell layer
def: "A layer of the ovarian follicles. They appear as the follicles become tertiary follicles. The theca folliculi are responsible for the production of testosterone from androstenedione in females, and indirectly the production of estrogens by supplying the neighboring granulosa cells with androstenedione that can then be used as a substrate for aromatase." [Wikipedia:Theca_of_follicle]
synonym: "layer of theca cells" EXACT []
synonym: "theca cell layer of ovarian follicle" EXACT []
synonym: "theca folliculi" RELATED []
synonym: "theca of follicle" EXACT []
xref: FMA:18656
xref: TAO:0001113
xref: ZFA:0001113
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001305 ! ovarian follicle
[Term]
id: UBERON:0000156
name: theca externa
alt_id: UBERON:0005182
def: "The theca externa is the outer layers of the theca folliculi. It contains abundant collagen and is mainly supportive." [Wikipedia:Theca_externa]
synonym: "ovary theca externa" EXACT [MA:0001713]
synonym: "tunica externa of theca folliculi" EXACT [FMA:18657]
xref: BTO:0002852
xref: FMA:18657
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Mature_Graffian_follicle.jpg/200px-Mature_Graffian_follicle.jpg
xref: MA:0001713
is_a: UBERON:0000158 ! membranous layer
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000155 ! theca cell layer
relationship: surrounds UBERON:0000157 ! theca interna
[Term]
id: UBERON:0000157
name: theca interna
alt_id: UBERON:0005183
def: "Theca interna cells express receptors for luteinizing hormone, which when activated will stimulate the production of androstenedione from cholesterol by the enzyme desmolase. Androstenedione ultimately gives the granulosa cells the precursor substrate for estrogen manufacturing." [Wikipedia:Theca_externa#Theca_interna]
synonym: "ovary theca interna" EXACT [MA:0001714]
xref: BTO:0002851
xref: FMA:18658
xref: MA:0001714
is_a: UBERON:0000158 ! membranous layer
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000155 ! theca cell layer
[Term]
id: UBERON:0000158
name: membranous layer
xref: FMA:82500
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0000159
name: anal canal
def: "The terminal part of the large intestine, continuous proximally with the rectum and distally terminates with the anus." [Wikipedia:Anal_canal]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adult alimentary canal" RELATED []
synonym: "anal canal" EXACT []
synonym: "anal canal viewed anatomically" EXACT []
synonym: "anal pad" RELATED []
synonym: "anatomical anal canal" EXACT []
synonym: "anus" RELATED []
synonym: "cloaca" RELATED []
synonym: "cloacal chamber" RELATED []
synonym: "mesenteron" RELATED []
xref: BTO:0001978
xref: EHDAA2:0000256
xref: FMA:15703
xref: galen:AnalCanal
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/17/Gray1078.png/200px-Gray1078.png
xref: MA:0000330
xref: ncithesaurus:Anal_Canal
xref: TAO:0000330
xref: ZFA:0000330
is_a: UBERON:0004111 ! anatomical conduit
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001046 ! hindgut
relationship: part_of UBERON:0001353 ! anal region
[Term]
id: UBERON:0000160
name: intestine
alt_id: UBERON:FBbt_00005785-FMA_15703-FMA_7199-MA_0000328-MA_0000330-MIAA_0000042-MIAA_0000043-WBbt_0005772-WBbt_0005774-XAO_0000129-XAO_0000244-ZFA_0000330-ZFA_0001338
def: "Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine." [GOC:GO, Wikipedia:Intestine]
comment: MA also has a class MA:0001524 bowel, not clear how this is different
subset: uberon_slim
synonym: "bowel" EXACT []
xref: AAO:0000246
xref: BTO:0000648
xref: EFO:0000834
xref: FMA:7199
xref: GAID:295
xref: galen:Intestine
xref: HOG:0000056
xref: MA:0000328
xref: MA:0001524
xref: MIAA:0000043
xref: ncithesaurus:Intestine
xref: TAO:0001338
xref: WBbt:0005772
xref: XAO:0000129
xref: ZFA:0001338
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0000161
name: orifice
def: "Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis." [FMA:3724]
synonym: "anatomical orifice" EXACT [FMA:3724]
synonym: "hilum" NARROW []
xref: FMA:3724
is_a: UBERON:0004111 ! anatomical conduit
[Term]
id: UBERON:0000162
name: cloaca
def: "Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca]
comment: Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP]
synonym: "cloacal chamber" RELATED []
synonym: "vent" RELATED []
xref: AAO:0000095
xref: EHDAA:4895
xref: EHDAA2:0000256
xref: GAID:1206
xref: HOG:0001186
xref: ncithesaurus:Cloaca
xref: WBbt:0005774
xref: XAO:0000244
xref: ZFA:0000330
is_a: UBERON:0000161 ! orifice
[Term]
id: UBERON:0000163
name: embryonic cloaca
def: "Structure in the development of the urinary and reproductive organs[WP]. endoderm-lined chamber into which the hidgut and allantois empty in early embryos[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)]
comment: compare UBERON:0000162 cloaca
synonym: "cloaca" RELATED SENSU []
xref: EHDAA2:0000256
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0003064 ! intermediate mesoderm
[Term]
id: UBERON:0000164
name: primitive urogenital sinus
def: "Part of the human body only present in the development of the urinary and reproductive organs. It is the ventral part of the cloaca, formed after the cloaca separates from the rectum. It eventually becomes, among other things, the bladder[WP]. ventral part of the cloaca remaining after septation of the rectum, which further develops into part of the bladder, part of the prostatic part of the male urethra and the urethra and vestibule in females[MP]." [Wikipedia:Urogenital_sinus]
comment: Note that the term "urogenital sinus" may refer to the primitive urogenital sinus present as a transient developmental structure in most mammals or it may refer to a condition in which an unseptated cloaca persists in animals longer than normal[MP].
synonym: "UGS" EXACT [MP:0010116]
synonym: "urogenital sinus" EXACT [MP:0010116]
xref: EHDAA:5029
xref: EHDAA:5919
xref: EHDAA2:0002142
xref: HOG:0000414
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png
xref: ncithesaurus:Urogenital_Sinus
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0000163 ! embryonic cloaca
relationship: develops_from UBERON:0003064 ! intermediate mesoderm
relationship: part_of UBERON:0000163 ! embryonic cloaca
[Term]
id: UBERON:0000165
name: mouth
def: "First portion of the alimentary canal that receives food and begins digestion by mechanically breaking up the solid food particles into smaller pieces and mixing them with saliva. The oral mucosa is the mucous membrane epithelium lining the inside of the mouth." [Wikipedia:Mouth]
comment: TODO - check fly mouthpart. note in uberon we distinguish between the mouth and the oral opening. the mouth is part of the digestive tract. TODO - check isa parent subdivision of head - is it a subdivision of the head or digestive tract
subset: uberon_slim
synonym: "adult mouth" EXACT []
xref: BTO:0001090
xref: EFO:0000825
xref: FMA:49184
xref: GAID:75
xref: galen:Mouth
xref: HOG:0000812
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg
xref: MA:0002474
xref: MAT:0000038
xref: MIAA:0000038
xref: OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA
xref: TAO:0000547
xref: XAO:0003029
xref: ZFA:0000547
is_a: UBERON:0001444 ! subdivision of head
relationship: develops_from UBERON:0000930 ! stomodeum
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0000166
name: oral opening
def: "The opening of the head through which food passes into the body." [NLM:mouth]
subset: uberon_slim
synonym: "adult mouth" RELATED []
synonym: "mouth" RELATED []
synonym: "oral part of face" EXACT []
synonym: "oral region" EXACT []
synonym: "orofacial cavity" RELATED []
synonym: "subdivision of mouth" EXACT []
xref: EHDAA:542
xref: EHDAA2:0001326
xref: FMA:59806
xref: HOG:0000280
xref: MA:0000341
xref: TAO:0000590
xref: ZFA:0000590
is_a: UBERON:0000161 ! orifice
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0000167
name: oral cavity
subset: uberon_slim
synonym: "cavity of mouth" EXACT []
xref: AAO:0000053
xref: EFO:0001975
xref: EHDAA:6970
xref: EHDAA2:0001324
xref: FMA:20292
xref: HAO:0000669
xref: HOG:0000188
xref: ncithesaurus:Oral_Cavity
xref: TAO:0001027
xref: WBbt:0005255
xref: XAO:0000126
xref: ZFA:0001027
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0000168
name: segment of colon
def: "An organ segment that is part of a colon [Obol]." [OBOL:automatic]
xref: FMA:222905
is_a: UBERON:0000063 ! implied link automatically realized ! organ segment
relationship: part_of UBERON:0001155
intersection_of: UBERON:0000063 ! organ segment
intersection_of: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0000170
name: pair of lungs
synonym: "lungs" EXACT []
synonym: "lungs pair" EXACT []
synonym: "set of lungs" EXACT []
xref: BTO:0000763
xref: EFO:0000934
xref: FMA:68877
xref: ncithesaurus:Lung
xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA
is_a: UBERON:0000477 ! anatomical cluster
relationship: has_part UBERON:0002167 ! right lung
relationship: has_part UBERON:0002168 ! left lung
[Term]
id: UBERON:0000171
name: respiration organ
def: "Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms." [GO:0007585]
subset: functional_classification
synonym: "apparatus respiratorius organ" EXACT [OBOL:automatic]
synonym: "breathing organ" EXACT []
synonym: "gas exchange organ" RELATED []
synonym: "organ of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "organ of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory organ" EXACT []
synonym: "respiratory system organ" EXACT [OBOL:automatic]
is_a: UBERON:0000062 ! implied link automatically realized ! organ
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0000172
name: vomit
def: "Vomit is a bodily fluid consisting of the expulsed contents of the stomach of an organism disgorged through the mouth or nose." [ENVO:00000338]
xref: ENVO:00000338
xref: galen:Vomitus
xref: OpenCyc:Mx4rvViQTJwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000173
name: amniotic fluid
def: "Amniotic fluid is a bodily fluid consisting of watery liquid surrounding and cushioning a growing fetus within the amnion. It allows the fetus to move freely without the walls of the uterus being too tight against its body. Buoyancy is also provided." [ENVO:02000021]
xref: BTO:0000068
xref: ENVO:02000021
xref: GAID:1155
xref: HOG:0001267
xref: MA:0002893
xref: ncithesaurus:Amniotic_Fluid
is_a: UBERON:0000463 ! portion of organism substance
relationship: surrounds UBERON:0000922 ! embryo
[Term]
id: UBERON:0000174
name: excreta
alt_id: UBERON:0000324
alt_id: UBERON:BTO_0000491-FMA_9674
def: "Excreta are bodily fluids consisting of waste matter, such as sweat or feces, discharged from the body." [ENVO:02000022]
synonym: "excretion" EXACT []
xref: BTO:0000491
xref: ENVO:02000022
xref: FMA:9674
xref: galen:Excretion
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000175
name: pleural effusion
def: "Pleural effusion is a bodily fluid that is produced in exess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation." [ENVO:02000033]
xref: ENVO:02000033
xref: ncithesaurus:Pleural_Effusion
xref: OpenCyc:Mx4rLaTGCK2TEduAAAAOpmP6tw
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000176
name: oronasal secretion
def: "Oronasal secretion is a bodily fluid secreted from the body via the mouth or nose." [ENVO:02000035]
xref: ENVO:02000035
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000177
name: pus
def: "Pus is a bodily fluid consisting of a whitish-yellow or yellow substance produced during inflammatory responses of the body that can be found in regions of pyogenic bacterial infections. Pus is produced from the dead and living cells which travel into the intercellular spaces around the affected cells." [ENVO:02000038]
xref: ENVO:02000038
xref: galen:Pus
xref: ncithesaurus:Pus
xref: OpenCyc:Mx4rvVjG6ZwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000178
name: blood
def: "Circulating body substance which consists of blood plasma and hemoglobin-carrying red blood cells. Excludes blood analogues (see UBERON:0000179 haemolymphatic fluid)." [FMA:9670, Wikipedia:Blood]
subset: uberon_slim
synonym: "blood" EXACT []
synonym: "portion of blood" EXACT []
xref: AAO:0000046
xref: BTO:0000089
xref: EFO:0000296
xref: EHDAA:418
xref: EHDAA2:0000176
xref: ENVO:02000027
xref: FMA:9670
xref: GAID:965
xref: galen:Blood
xref: HOG:0000224
xref: MA:0000059
xref: MIAA:0000315
xref: ncithesaurus:Blood
xref: OpenCyc:Mx4rvVjI8JwpEbGdrcN5Y29ycA
xref: TAO:0000007
xref: XAO:0000124
xref: ZFA:0000007
is_a: UBERON:0000179 ! haemolymphatic fluid
relationship: part_of UBERON:0002390 ! hematopoietic system
[Term]
id: UBERON:0000179
name: haemolymphatic fluid
def: "Circulating fluid that is part of the hemolymphoid system. Blood, lymph, interstitial fluid or its analogs." []
synonym: "blood or blood analog" RELATED []
synonym: "haematological system portion of organism substance" EXACT [OBOL:automatic]
synonym: "haemopoietic system portion of organism substance" EXACT [OBOL:automatic]
synonym: "hematopoietic system portion of organism substance" EXACT [OBOL:automatic]
synonym: "organa haemopoietica portion of organism substance" EXACT [OBOL:automatic]
synonym: "portion of organism substance of haematological system" EXACT [OBOL:automatic]
synonym: "portion of organism substance of haemopoietic system" EXACT [OBOL:automatic]
synonym: "portion of organism substance of hematopoietic system" EXACT [OBOL:automatic]
synonym: "portion of organism substance of organa haemopoietica" EXACT [OBOL:automatic]
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0002390
intersection_of: UBERON:0000463 ! portion of organism substance
intersection_of: part_of UBERON:0002390 ! hematopoietic system
created_by: cjm
creation_date: 2009-04-08T04:38:19Z
[Term]
id: UBERON:0000200
name: gyrus
def: "A ridge, generally surrounded by one or more sulci." [Wikipedia:Gyrus]
comment: TODO - check. WP says cerebral cortex. Here we use it very generally
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000201
name: endothelial blood brain barrier
def: "A blood brain barrier that is composed of endothelial cells." [UBERON:cjm]
xref: NIF_Subcellular:nlx_subcell_100205
is_a: UBERON:0000120 ! blood brain barrier
created_by: cjm
creation_date: 2009-04-10T08:15:44Z
[Term]
id: UBERON:0000202
name: glial blood brain barrier
def: "A blood brain barrier composed of glial cells." [UBERON:cjm]
xref: FBbt:00007091
is_a: UBERON:0000120 ! blood brain barrier
created_by: cjm
creation_date: 2009-04-10T08:42:24Z
[Term]
id: UBERON:0000203
name: pallium
def: "Roof of the telencephalon. In humans the cerebrum has three parts: the archipallium, the paleopallium and the neopallium. The developing telencephalon or forebrain is divided into pallium and subpallium. In amphibians, the cerebrum includes archipallium, paleopallium and some of the basal nuclei. Reptiles first developed a neopallium, which continued to develop in the brains of more recent species to become the neocortex of humans and Old World monkeys. In fish, the archipallium is the largest part of the cerebrum. Some researchers suggest the early archipallium gave rise to the human hippocampus." [GO:0021543, Wikipedia:Pallium_(neuroanatomy)]
xref: ZFA:0007007
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001893 ! telencephalon
created_by: cjm
creation_date: 2009-04-18T12:03:09Z
[Term]
id: UBERON:0000204
name: subpallium
def: "Base region of the telencephalon." [GO:0021544]
synonym: "ventral telencephalon" EXACT [ZFA:0000304]
xref: BTO:0003401
xref: ZFA:0000304
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001893 ! telencephalon
created_by: cjm
creation_date: 2009-04-18T12:12:27Z
[Term]
id: UBERON:0000205
name: echinoderm gill
def: "Respiration in the Echinodermata (includes starfish and sea urchins) is carried out using a very primitive version of gills called papulli. These are thin protuberances on the surface of the body containing diverticula of the water vascular system." []
is_a: UBERON:0002535 ! gill
created_by: cjm
creation_date: 2009-04-18T01:13:57Z
[Term]
id: UBERON:0000206
name: pharyngeal gill
def: "Gills of vertebrates are developed in the walls of the pharynx along a series of gill slits opening to the exterior. In fish, the gills are located on both sides of the pharynx. Gills are made of filaments which help increase surface area for oxygen exchange. In bony fish, the gills are covered by a bony cover called an operculum. When a fish breathes, it opens its mouth at regular times and draws in a mouthful of water. It then draws the sides of its throat together, forcing the water through the gill openings. The water passes over the gills on the outside. Valves inside the mouth keep the water from escaping through the mouth again. The operculum can be very important in adjusting the pressure of water inside of the pharynx to allow proper ventilation of the gills. Lampreys and sharks lack an operculum, they have multiple gill openings. Also, they must use different methods to force water over the gills. In sharks and rays, this ventilation of the gills is achieved either by the use of spiracles or ram ventilation (ventilation by constantly swimming). Although some animals use this method it is much better for animals to use a spiracle because they are less susceptible to injury." [Wikipedia:Gill#Vertebrate_gills]
is_a: UBERON:0002535 ! gill
relationship: adjacent_to UBERON:0001042 ! pharynx
created_by: cjm
creation_date: 2009-04-18T01:18:17Z
[Term]
id: UBERON:0000207
name: compound eye corneal lens
def: "A chitinous extracellular secretion of the four underlying cone cells and the pigment cells." [GO:0048058]
synonym: "acellular lens" RELATED []
xref: FBbt:00004199
xref: TADS:0000304
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0005389 ! transparent eye structure
relationship: part_of UBERON:0000018 ! compound eye
created_by: cjm
creation_date: 2009-04-18T01:35:32Z
[Term]
id: UBERON:0000208
name: cellular lens
is_obsolete: true
created_by: cjm
creation_date: 2009-04-18T01:37:39Z
[Term]
id: UBERON:0000209
name: tetrapod frontal bone
alt_id: UBERON:FMA_9613-MA_0001469-ZFA_0000486
def: "In humans: A bone resembling a cockleshell in two portions the squama frontalis, corresponding with the region of the forehead, and an orbital or horizontal portion, the pars orbitalis, which enters into the formation of the roofs of the orbital and nasal cavities." [Wikipedia:Frontal_bone]
comment: The parietal bone in teleost fish is the homolog of the frontal bone in tetrapods
synonym: "frontal bone" NARROW [FMA:52734, MA:0001466]
xref: FMA:52734
xref: GAID:226
xref: HOG:0001324
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray136.png/200px-Gray136.png
xref: MA:0001466
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone
relationship: adjacent_to UBERON:0001697 ! orbit
relationship: part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0000210
name: tetrapod parietal bone
alt_id: UBERON:FMA_52734-MA_0001466-ZFA_0000514
def: "In humans: bone forming side and roof of cranium. Each bone is irregularly quadrilateral in form, and has two surfaces, four borders, and four angles." [Wikipedia:Parietal_bone, ZFA:0000514]
comment: The frontal bone in teleost fish is the homolog of the parietal bone in tetrapods
synonym: "frontal bone" NARROW [TAO:0000514]
synonym: "parietal bone" NARROW [FMA:9613]
synonym: "teleost frontal bone" NARROW [TAO:0000514]
xref: FMA:9613
xref: GAID:229
xref: HOG:0001324
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray132.png/200px-Gray132.png
xref: MA:0001469
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone
relationship: part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0000211
name: ligament
def: "Short band of tough fibrous dense regular connective tissue composed mainly of long, stringy collagen fibers. Ligaments connect bones to other bones to form a joint." [Wikipedia:Ligament]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "articular ligament" EXACT [Wikipedia:Ligament]
synonym: "fibrous ligament" EXACT [Wikipedia:Ligament]
synonym: "true ligament" EXACT [Wikipedia:Ligament]
xref: AEO:0000090
xref: EFO:0001966
xref: FMA:21496
xref: GAID:118
xref: galen:Ligament
xref: HOG:0001272
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Knee_diagram.svg/200px-Knee_diagram.svg.png
xref: MA:0000113
xref: ncithesaurus:Ligament
xref: OpenCyc:Mx4rvVjqpZwpEbGdrcN5Y29ycA
xref: TAO:0001682
xref: ZFA:0001675
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0000212
name: toilet claw
def: "specialized claw or nail on the foot of certain primates, used for personal grooming." [Wikipedia:Toilet-claw]
is_a: UBERON:0001705 ! nail
created_by: cjm
creation_date: 2009-05-19T08:19:58Z
[Term]
id: UBERON:0000301
name: amniotic cavity
alt_id: UBERON:BTO_0000025-FMA_63941
def: "The amniotic cavity is formed by the fusion of the parts of the amniotic fold, which first makes its appearance at the cephalic extremity, and subsequently at the caudal end and sides of the embryo. As the amniotic fold rises and fuses over the dorsal aspect of the embryo, the amniotic cavity is formed. [WP,unvetted]." [Wikipedia:Amniotic_cavity]
xref: BTO:0000025
xref: EHDAA:83
xref: EHDAA2:0000119
xref: FMA:63941
xref: HOG:0000855
xref: ncithesaurus:Amniotic_Cavity
is_a: UBERON:0000464 ! anatomical space
relationship: has_part UBERON:0000173 ! amniotic fluid
[Term]
id: UBERON:0000303
name: adductor longus
alt_id: UBERON:BTO_0000029-FMA_22441
def: "The adductor longus muscle is a muscle of the human body. It is a part of the adductor group of the thigh, that as the name suggests adducts the thigh. The adductor longus muscle forms the medial wall of the femoral triangle[WP]." [Wikipedia:Adductor_longus]
synonym: "adductor longus muscle" EXACT []
xref: BTO:0000029
xref: FMA:22441
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
is_a: UBERON:0000952 ! adductor muscle
is_a: UBERON:0004252 ! implied link automatically realized ! upper leg muscle
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0000304
name: tendon sheath
alt_id: UBERON:BTO_0000051-FMA_76715
def: "A layer of membrane around a tendon. It has 2 layers: synovial sheath + fibrous tendon sheath" [Wikipedia:Tendon_sheath]
comment: TODO: add layer relations
xref: BTO:0000051
xref: FMA:76715
is_a: UBERON:0000479 ! portion of tissue
relationship: has_part UBERON:0002018 ! synovial membrane
relationship: surrounds UBERON:0000043 ! tendon
[Term]
id: UBERON:0000305
name: amnion
alt_id: UBERON:BTO_0000065-FMA_80223
def: "A membrane building the amniotic sac that surrounds and protects an embryo. It is developed in reptiles, birds, and mammals, which are hence called “Amniota”; but not in amphibians and fish (Ichthyopsida), which are consequently termed “Anamniota”. The primary function of this is the protection of the embryo for its development. It stems from parts of the mesoderm on the outer side and the ectoderm on the inner side[WP]." [Wikipedia:Amnion]
xref: BTO:0000065
xref: EHDAA:136
xref: EHDAA2:0000116
xref: FMA:80223
xref: GAID:1298
xref: HOG:0000721
xref: ncithesaurus:Amnion
is_a: UBERON:0005631 ! extraembryonic membrane
relationship: surrounds UBERON:0000922 ! embryo
[Term]
id: UBERON:0000307
name: blastula
alt_id: UBERON:BTO_0000128-FMA_83041
def: "Organism at the blastula stage - an early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula]
comment: TODO - check relationship with epiblast
synonym: "blastosphere" RELATED [Wikipedia:Blastula]
xref: BTO:0000128
xref: FMA:83041
xref: GAID:1294
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Blastulation.png/200px-Blastulation.png
xref: OGEM:000006
xref: OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg
is_a: UBERON:0000922 ! embryo
relationship: existence_starts_and_ends_during UBERON:0000108 ! blastula stage
[Term]
id: UBERON:0000309
name: body wall
alt_id: UBERON:BTO_0000139-FMA_10427
def: "the external portion of an animal body comprised of ectoderm and mesoderm layers that encloses the body cavity." [MP:0003385]
synonym: "Trunk wall" EXACT [FMA:10427]
synonym: "Wall of trunk" EXACT [FMA:10427]
xref: BTO:0000139
xref: FMA:10427
xref: galen:BodyWall
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0000310
name: breast
alt_id: UBERON:BTO_0000149-FMA_9601
def: "The breast is the upper ventral region of an animal's torso, particularly that of mammals, including human beings. The breasts of a female primate’s body contain the mammary glands, which secrete milk used to feed infants. Both men and women develop breasts from the same embryological tissues. However, at puberty female sex hormones, mainly estrogens, promote breast development, which does not happen with men. As a result women's breasts become more prominent than men's. [WP,unvetted]." [Wikipedia:Breast]
synonym: "mammary part of chest" EXACT [FMA:9601]
synonym: "mammary region" EXACT [FMA:9601]
xref: BTO:0000149
xref: FMA:9601
xref: GAID:33
xref: galen:Breast
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Closeup_of_female_breast.jpg/200px-Closeup_of_female_breast.jpg
xref: ncithesaurus:Breast
xref: OpenCyc:Mx4rvVjV7ZwpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0000311
name: extensor muscle
alt_id: UBERON:BTO_0000151-FMA_74561
def: "A muscle that, upon contraction, tends to straighten a limb. The antagonist of a flexor muscle[BTO]. Any of the muscles that increase the angle between members of a limb, as by straightening the elbow or knee or bending the wrist or spine backward. The movement is usually directed backward, with the notable exception of the knee joint. In humans, certain muscles of the hand and foot are named for this function. In the hand these include the extensor carpi radialis brevis, extensor carpi radialis longus, and extensor carpi ulnaris, which run from the humerus (bone of the upper arm) along the back of the forearm to the metacarpal bones at the back of the hand[Britannica]" [http://www.britannica.com/EBchecked/topic/198909/extensor-muscle]
synonym: "extensor" RELATED []
xref: BTO:0000151
xref: FMA:75000
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003661 ! implied link automatically realized ! limb muscle
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0000312
name: cambium
alt_id: UBERON:BTO_0000170-FMA_234358
synonym: "Cambial layer" EXACT [FMA:234358]
synonym: "Cambium layer of periosteum" EXACT [FMA:234358]
synonym: "Inner cambial layer of periosteum" EXACT [FMA:234358]
xref: BTO:0000170
xref: EFO:0001016
xref: FMA:234358
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002515 ! periosteum
[Term]
id: UBERON:0000313
name: tibial cartilage
alt_id: UBERON:BTO_0000207-FMA_33923
def: "A cartilage that is part of a tibia [Obol]." [OBOL:automatic]
xref: BTO:0000207
xref: FMA:33923
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0002418 ! implied link automatically realized ! cartilage
is_a: UBERON:0003569 ! implied link automatically realized ! leg connective tissue
relationship: part_of UBERON:0000979
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0000979 ! tibia
[Term]
id: UBERON:0000314
name: cecum mucosa
alt_id: UBERON:BTO_0000213-FMA_14998
def: "A mucosa that is part of a cecum [Obol]." [OBOL:automatic]
synonym: "caecum mucosa" EXACT [OBOL:automatic]
synonym: "caecum mucosa of organ" EXACT [OBOL:automatic]
synonym: "caecum mucous membrane" EXACT [OBOL:automatic]
synonym: "caecum organ mucosa" EXACT [OBOL:automatic]
synonym: "Cecal mucosa" EXACT [FMA:14998]
synonym: "cecum mucosa of organ" EXACT [OBOL:automatic]
synonym: "cecum mucous membrane" EXACT [OBOL:automatic]
synonym: "cecum organ mucosa" EXACT [OBOL:automatic]
synonym: "intestinum crassum caecum mucosa" EXACT [OBOL:automatic]
synonym: "intestinum crassum caecum mucosa of organ" EXACT [OBOL:automatic]
synonym: "intestinum crassum caecum mucous membrane" EXACT [OBOL:automatic]
synonym: "intestinum crassum caecum organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of caecum" EXACT [OBOL:automatic]
synonym: "mucosa of cecum" EXACT [OBOL:automatic]
synonym: "mucosa of intestinum crassum caecum" EXACT [OBOL:automatic]
synonym: "mucosa of organ of caecum" EXACT [OBOL:automatic]
synonym: "mucosa of organ of cecum" EXACT [OBOL:automatic]
synonym: "mucosa of organ of intestinum crassum caecum" EXACT [OBOL:automatic]
synonym: "mucous membrane of caecum" EXACT [OBOL:automatic]
synonym: "mucous membrane of cecum" EXACT [OBOL:automatic]
synonym: "mucous membrane of intestinum crassum caecum" EXACT [OBOL:automatic]
synonym: "organ mucosa of caecum" EXACT [OBOL:automatic]
synonym: "organ mucosa of cecum" EXACT [OBOL:automatic]
synonym: "organ mucosa of intestinum crassum caecum" EXACT [OBOL:automatic]
xref: BTO:0000213
xref: FMA:14998
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004990 ! implied link automatically realized ! mucosa of ascending colon
relationship: part_of UBERON:0001153
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001153 ! cecum
[Term]
id: UBERON:0000315
name: subarachnoid space
alt_id: UBERON:BTO_0000230-FMA_83716
def: "the space between the arachnoid and dura mater that is traversed by fibrous trabeculae and contains cerebrospinal fluid." [MP:0009027, Wikipedia:Subarachnoid_space]
xref: BTO:0000230
xref: FMA:83716
xref: GAID:689
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Gray769.png/200px-Gray769.png
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0000316
name: cervical mucus
alt_id: UBERON:BTO_0000242-FMA_83689
def: "Thick acidic mucus that blocks the cervical os after mestruation[WP]. This 'infertile' mucus blocks spermatozoa from entering the uterus." [Wikipedia:Cervix#Cervical_mucus]
xref: BTO:0000242
xref: FMA:83689
is_a: UBERON:0000912 ! mucus
[Term]
id: UBERON:0000317
name: colonic mucosa
alt_id: UBERON:0003347
alt_id: UBERON:0004981
alt_id: UBERON:BTO_0000271-FMA_14984
def: "A mucosa that is part of a colon [Obol]." [OBOL:automatic]
synonym: "colon mucosa" EXACT [FMA:14984]
synonym: "colon mucosa of organ" EXACT [OBOL:automatic]
synonym: "colon mucous membrane" EXACT [OBOL:automatic]
synonym: "colon organ mucosa" EXACT [OBOL:automatic]
synonym: "colonic mucous membrane" EXACT [FMA:14984]
synonym: "large bowel mucosa" EXACT [OBOL:automatic]
synonym: "large bowel mucosa of organ" EXACT [OBOL:automatic]
synonym: "large bowel mucous membrane" EXACT [OBOL:automatic]
synonym: "large bowel organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of colon" EXACT [FMA:14984]
synonym: "mucosa of large bowel" EXACT [OBOL:automatic]
synonym: "mucosa of organ of colon" EXACT [OBOL:automatic]
synonym: "mucosa of organ of large bowel" EXACT [OBOL:automatic]
synonym: "mucous membrane of colon" EXACT [OBOL:automatic]
synonym: "mucous membrane of large bowel" EXACT [OBOL:automatic]
synonym: "organ mucosa of colon" EXACT [OBOL:automatic]
synonym: "organ mucosa of large bowel" EXACT [OBOL:automatic]
xref: BTO:0000271
xref: EMAPA:27375
xref: FMA:14984
xref: FMA:85388
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0001207 ! implied link automatically realized ! mucosa of large intestine
relationship: part_of UBERON:0001155
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0000319
name: cytotrophoblast
alt_id: UBERON:BTO_0000322-FMA_83039
def: "The cytotrophoblast (or layer of Langhans) is the inner layer of the trophoblast, interior to the syncytiotrophoblast in an embryo. It serves to anchor the embryonic chorion to the maternal endometrium. Cytotrophoblasts are stem cells in the chorionic villi. During differentiation, mononuclear cytotrophoblast fuse together into the multinucleated syncytiotrophoblasts. The primary villi has only the cytotrophoblast as an axe. [WP,unvetted]." [Wikipedia:Cytotrophoblast]
synonym: "Cellular trophoblast" EXACT [FMA:83039]
synonym: "Cytotrophoblastic cell" EXACT [FMA:83039]
xref: BTO:0000322
xref: EHDAA:127
xref: EHDAA:152
xref: EHDAA:89
xref: FMA:83039
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray36.png/200px-Gray36.png
xref: ncithesaurus:Cytotrophoblast
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000320
name: duodenal mucosa
alt_id: UBERON:0003348
alt_id: UBERON:BTO_0000367-FMA_14942
def: "A mucosa that is part of a duodenum [Obol]." [OBOL:automatic]
synonym: "Doudenal mucosa" EXACT [FMA:14942]
synonym: "Duodenal mucous membrane" EXACT [FMA:14942]
synonym: "mucosa of duodenum" EXACT [OBOL:automatic]
synonym: "mucous membrane of duodenum" EXACT [OBOL:automatic]
xref: BTO:0000367
xref: EMAPA:27235
xref: FMA:14942
is_a: UBERON:0001204 ! implied link automatically realized ! mucosa of small intestine
relationship: part_of UBERON:0002114
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002114 ! duodenum
[Term]
id: UBERON:0000322
name: cerebral lobe
alt_id: UBERON:BTO_0000445-FMA_77800
comment: set/singular
synonym: "Cerebral lobes" EXACT [FMA:77800]
synonym: "Cerebral lobes set" EXACT [FMA:77800]
xref: BTO:0000445
xref: FMA:77800
is_a: UBERON:0002619 ! regional part of cerebral cortex
[Term]
id: UBERON:0000323
name: fetus
alt_id: UBERON:BTO_0000449-FMA_63919
comment: TODO - check fetus/embryo. WP: An embryo is a multicellular diploid eukaryote in its earliest stage of development, from the time of first cell division until birth, hatching, or germination. In humans, it is called an embryo until about eight weeks after fertilization (i.e. ten weeks LMP), and from then it is instead called a fetus.
xref: BTO:0000449
xref: EFO:0001323
xref: EV:0300011
xref: FMA:63919
xref: GAID:552
xref: ncithesaurus:Fetus
xref: OGES:000023
xref: OpenCyc:Mx4rvZfC2ZwpEbGdrcN5Y29ycA
is_a: UBERON:0000922 ! embryo
[Term]
id: UBERON:0000325
name: gastric gland
alt_id: UBERON:BTO_0000503-FMA_14919
xref: BTO:0000503
xref: FMA:14919
is_a: UBERON:0002530 ! gland
[Term]
id: UBERON:0000326
name: pancreatic juice
alt_id: UBERON:BTO_0000504-FMA_62973
def: "Pancreatic juice is slightly alkaline and contains numerous enzymes and inactive enzyme precursors including alpha-amylase, chymotrypsinogen, lipase, procarboxypeptidase, proelastase, prophospholipase A2, ribonuclease, and trypsinogen. Its high concentration of bicarbonate ions helps to neutralize the acid from the stomach." [GO:0030157]
xref: BTO:0000504
xref: FMA:62973
xref: GAID:1166
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000328
name: gut wall
alt_id: UBERON:BTO_0000547-FMA_45653
xref: BTO:0000547
xref: FMA:45653
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001555 ! digestive tract
relationship: systemic_part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0000329
name: hair root
alt_id: UBERON:BTO_0000555-FMA_70730
def: "The enlarged basal part of a hair within the skin[BTO]. The root of the hair ends in an enlargement, the hair bulb, which is whiter in color and softer in texture than the shaft, and is lodged in a follicular involution of the epidermis called the hair follicle. [Wikipedia]." [BTO:0000555, Wikipedia:Hair_root]
synonym: "root of hair" EXACT [FMA:70730]
xref: BTO:0000555
xref: FMA:70730
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray944.png/200px-Gray944.png
xref: ncithesaurus:Hair_Root
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001037 ! strand of hair
[Term]
id: UBERON:0000331
name: ileal mucosa
alt_id: UBERON:BTO_0000619-FMA_14956
def: "A mucosa that is part of a ileum [Obol]." [OBOL:automatic]
synonym: "Ileal mucous membrane" EXACT [FMA:14956]
synonym: "Ileum mucosa" EXACT [FMA:14956]
synonym: "ileum mucosa" EXACT [OBOL:automatic]
synonym: "ileum mucosa of organ" EXACT [OBOL:automatic]
synonym: "ileum mucous membrane" EXACT [OBOL:automatic]
synonym: "ileum organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of ileum" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ileum" EXACT [OBOL:automatic]
synonym: "mucous membrane of ileum" EXACT [OBOL:automatic]
synonym: "organ mucosa of ileum" EXACT [OBOL:automatic]
xref: BTO:0000619
xref: FMA:14956
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0001204 ! implied link automatically realized ! mucosa of small intestine
relationship: part_of UBERON:0002116
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002116 ! ileum
[Term]
id: UBERON:0000332
name: yellow bone marrow
alt_id: UBERON:BTO_0000635-FMA_74596
xref: BTO:0000635
xref: FMA:74596
is_a: UBERON:0002371 ! bone marrow
[Term]
id: UBERON:0000333
name: intestinal gland
alt_id: UBERON:BTO_0000640-FMA_15052
def: "A gland that is part of a intestinal mucosa [Obol]." [OBOL:automatic]
comment: TODO check UBERON:0001983
synonym: "bowel mucosa gland" EXACT [OBOL:automatic]
synonym: "bowel mucosa of organ gland" EXACT [OBOL:automatic]
synonym: "bowel mucous membrane gland" EXACT [OBOL:automatic]
synonym: "bowel organ mucosa gland" EXACT [OBOL:automatic]
synonym: "gland of bowel mucosa" EXACT [OBOL:automatic]
synonym: "gland of bowel mucosa of organ" EXACT [OBOL:automatic]
synonym: "gland of bowel mucous membrane" EXACT [OBOL:automatic]
synonym: "gland of bowel organ mucosa" EXACT [OBOL:automatic]
synonym: "gland of intestinal mucosa" EXACT [OBOL:automatic]
synonym: "gland of intestine mucosa" EXACT [OBOL:automatic]
synonym: "gland of intestine mucosa of organ" EXACT [OBOL:automatic]
synonym: "gland of intestine mucous membrane" EXACT [OBOL:automatic]
synonym: "gland of intestine organ mucosa" EXACT [OBOL:automatic]
synonym: "gland of mucosa of bowel" EXACT [OBOL:automatic]
synonym: "gland of mucosa of intestine" EXACT [OBOL:automatic]
synonym: "gland of mucosa of organ of bowel" EXACT [OBOL:automatic]
synonym: "gland of mucosa of organ of intestine" EXACT [OBOL:automatic]
synonym: "gland of mucous membrane of bowel" EXACT [OBOL:automatic]
synonym: "gland of mucous membrane of intestine" EXACT [OBOL:automatic]
synonym: "gland of organ mucosa of bowel" EXACT [OBOL:automatic]
synonym: "gland of organ mucosa of intestine" EXACT [OBOL:automatic]
synonym: "Glandula intestinalis" EXACT [FMA:15052]
synonym: "intestinal mucosa gland" EXACT [OBOL:automatic]
synonym: "intestine mucosa gland" EXACT [OBOL:automatic]
synonym: "intestine mucosa of organ gland" EXACT [OBOL:automatic]
synonym: "intestine mucous membrane gland" EXACT [OBOL:automatic]
synonym: "intestine organ mucosa gland" EXACT [OBOL:automatic]
synonym: "mucosa of bowel gland" EXACT [OBOL:automatic]
synonym: "mucosa of intestine gland" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bowel gland" EXACT [OBOL:automatic]
synonym: "mucosa of organ of intestine gland" EXACT [OBOL:automatic]
synonym: "mucous membrane of bowel gland" EXACT [OBOL:automatic]
synonym: "mucous membrane of intestine gland" EXACT [OBOL:automatic]
synonym: "organ mucosa of bowel gland" EXACT [OBOL:automatic]
synonym: "organ mucosa of intestine gland" EXACT [OBOL:automatic]
xref: BTO:0000640
xref: FMA:15052
is_a: UBERON:0002530 ! gland
is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut
relationship: part_of UBERON:0001242
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001242 ! intestinal mucosa
relationship: part_of UBERON:0001242 ! intestinal mucosa
[Term]
id: UBERON:0000341
name: throat
alt_id: UBERON:BTO_0000828-FMA_228738
def: "In anatomy, the throat is the anterior part of the neck, in front of the vertebral column. It consists of the pharynx and larynx. An important feature of the throat is the epiglottis, a flap which separates the esophagus from the trachea and prevents inhalation of food or drink. The throat contains various blood vessels, various pharyngeal muscles, the trachea (windpipe) and the esophagus. The hyoid bone and the clavicle are the only bones located in the throat of mammals. It is sometimes considered a synonym for fauces. [WP,unvetted]." [Wikipedia:Throat]
xref: BTO:0000828
xref: FMA:228738
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Throat_Diagram.png/200px-Throat_Diagram.png
xref: ncithesaurus:Throat
xref: OpenCyc:Mx4rwQtO_JwpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000344
name: mucosa
alt_id: UBERON:BTO_0000886-FMA_85355
def: "A lining of mostly endodermal origin, covered in epithelium, which is involved in absorption and secretion. They line various body cavities that are exposed to the external environment and internal organs. It is at several places continuous with skin: at the nostrils, the lips, the ears, the genital area, and the anus. The sticky, thick fluid secreted by the mucous membranes and gland is termed mucus. The term mucous membrane refers to where they are found in the body and not every mucous membrane secretes mucus[WP]" [Wikipedia:Mucous_membrane]
comment: TODO - check - mucosa vs region of mucosa. In FMA these are subtypes of Mucosa: Mucosa of \{gallbladder, tongue, ...}. The following are subtypes of Region of mucosa: Mucosa of \{zone of stomach, trachea, bronchus, dorsum of tongue...}. Depends on whether the covered area is an organ or organ component. Uberon does not regard organ vs organ component as crucial distinction and thus collapses these into a single class deliberately
synonym: "mucosa of organ" EXACT [FMA:85355]
synonym: "mucous membrane" EXACT [FMA:85355]
synonym: "organ mucosa" EXACT [FMA:85355]
synonym: "region of mucosa" RELATED [FMA:85358]
xref: BTO:0000886
xref: FMA:85355
xref: FMA:85358
xref: GAID:297
xref: galen:Mucosa
xref: http://upload.wikimedia.org/wikipedia/en/thumb/4/4e/Ens.png/200px-Ens.png
xref: ncithesaurus:Mucosa
xref: OpenCyc:Mx4rvmKNOpwpEbGdrcN5Y29ycA
is_a: UBERON:0004923 ! organ component layer
[Term]
id: UBERON:0000345
name: myelin
alt_id: UBERON:BTO_0000894-FMA_62977
xref: BTO:0000894
xref: FMA:62977
xref: ncithesaurus:Myelin
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000346
name: myelin membrane
alt_id: UBERON:BTO_0000895-FMA_73417
comment: BTO has def The multilamellar myelin membrane is a specisalised lipid-rich domain of the glial cell plasma membrane. FMA has primary term name Myelinated plasma membrane of Schwann cell
synonym: "myelinated plasma membrane of Schwann cell" EXACT [FMA:73417]
xref: BTO:0000895
xref: FMA:73417
is_a: UBERON:0000470 ! cell part
relationship: has_part UBERON:0000345 ! myelin
[Term]
id: UBERON:0000347
name: myelin sheath
alt_id: UBERON:BTO_0000900-FMA_62983
def: "the insulating envelope that surrounds nerve fibers or axons." [MP:0003871]
xref: BTO:0000900
xref: FMA:62983
xref: GAID:731
xref: GO:0043209
xref: ncithesaurus:Myelin_Sheath
is_a: UBERON:0000470 ! cell part
relationship: has_part UBERON:0000345 ! myelin
[Term]
id: UBERON:0000348
name: ophthalmic nerve
alt_id: UBERON:BTO_0000926-FMA_52621
def: "the sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the orbit and its contents, the nasal cavity and the skin of the nose and forehead." [MP:0009798]
synonym: "First division of fifth cranial nerve" EXACT [FMA:52621]
synonym: "First division of trigeminal nerve" EXACT [FMA:52621]
synonym: "Nervus ophthalmicus (V1)" EXACT [FMA:52621]
synonym: "Nervus ophthalmicus (Va)" EXACT [FMA:52621]
synonym: "Ophthalmic division [V1]" EXACT [FMA:52621]
synonym: "Ophthalmic division [Va]" EXACT [FMA:52621]
synonym: "Ophthalmic division of fifth cranial nerve" EXACT [FMA:52621]
synonym: "Ophthalmic division of trigeminal nerve (V1)" EXACT [FMA:52621]
synonym: "Ophthalmic division of trigeminal nerve (Va)" EXACT [FMA:52621]
synonym: "Ophthalmic nerve [V1]" EXACT [FMA:52621]
synonym: "Ophthalmic nerve [Va]" EXACT [FMA:52621]
synonym: "trigeminal V nerve ophthalmic division" EXACT [MA:0001104]
xref: BTO:0000926
xref: FMA:52621
xref: GAID:837
xref: MA:0001104
xref: ncithesaurus:Ophthalmic_Nerve
xref: OpenCyc:Mx4rwEs_K5wpEbGdrcN5Y29ycA
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system
relationship: branch_of UBERON:0001645 ! trigeminal nerve
[Term]
id: UBERON:0000349
name: limbic system
alt_id: UBERON:BTO_0000928-FMA_242000
def: "A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. [BirnLex]. including the hippocampus, amygdala, anterior thalamic nuclei, and limbic cortex, which support a variety of functions including emotion, behavior, long term memory, and olfaction [Wikipedia]." [BIRNLEX:Limbic_system, Wikipedia:Limbic_system]
comment: obsoletion recommended. The current part_of children were chosen as the intersection of what is stated in wikipedia and in the FMA. NIF: We are including Limbic System because it is still used by neuroscientists and others, but as a data annotation term, it is very poor because it is not a clearly defined entity.
xref: BTO:0000928
xref: FMA:242000
xref: GAID:615
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Brain_limbicsystem.jpg/200px-Brain_limbicsystem.jpg
xref: OpenCyc:Mx4rwAeba5wpEbGdrcN5Y29ycA
is_a: UBERON:0000467 ! anatomical system
[Term]
id: UBERON:0000351
name: nuchal ligament
alt_id: UBERON:BTO_0000952-FMA_13427
synonym: "Ligament of neck" EXACT [FMA:13427]
xref: BTO:0000952
xref: FMA:13427
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0000353
name: parenchyma
alt_id: UBERON:BTO_0000999-FMA_45732
def: "functional part of an organ in the body. This is in contrast to the stroma, which refers to the structural tissue of organs, being exactly, connective tissues. Early in development the mammalian embryo has three distinct layers: ectoderm (external layer), endoderm (internal layer) and in between those two layers the middle layer or mesoderm. The parenchyma of most organs is of ectodermal (brain, skin) or endodermal origin (lungs, gastrointestinal tract, liver, pancreas). The parenchyma of a few organs (spleen, kidneys, heart) is of mesodermal origin. The stroma of all organs is of mesodermal origin[WP]." [Wikipedia:Parenchyma]
comment: BTO:0000999 rejected as this refers specifically to plant
xref: EHDAA:3015
xref: EHDAA:3905
xref: EHDAA:3999
xref: EHDAA:4005
xref: EHDAA:6899
xref: EHDAA:6903
xref: EHDAA:6994
xref: EHDAA:8086
xref: EHDAA:9182
xref: EHDAA:9190
xref: EHDAA:9196
xref: EHDAA:9202
xref: FMA:45732
xref: ncithesaurus:Parenchyma
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000355
name: pharyngeal mucosa
alt_id: UBERON:0003344
alt_id: UBERON:BTO_0001047-FMA_55031
def: "A mucosa that is part of a pharynx [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of pharynx" EXACT [OBOL:automatic]
synonym: "Mucous membrane of pharynx" EXACT [FMA:55031]
synonym: "mucous membrane of pharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of pharynx" EXACT [OBOL:automatic]
synonym: "pharynx mucosa" EXACT [OBOL:automatic]
synonym: "pharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "pharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "pharynx organ mucosa" EXACT [OBOL:automatic]
xref: BTO:0001047
xref: EMAPA:26957
xref: EMAPA:26965
xref: FMA:55031
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa
relationship: part_of UBERON:0001042
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0000358
name: blastocyst
alt_id: UBERON:BTO_0001099-FMA_83041
def: "The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]." [GO:0001824, Wikipedia:Blastocyst]
synonym: "Blastula" EXACT [FMA:83041]
xref: BTO:0001099
xref: EFO:0000295
xref: FMA:83041
xref: GAID:1153
xref: GAID:1294
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png
xref: ncithesaurus:Blastocyst
xref: OGEM:000006
xref: OGES:000003
xref: OGES:000016
xref: OGES:000021
xref: OpenCyc:Mx4rEetFnKP2EdqAAAACs4vPlg
is_a: UBERON:0002050 ! embryonic structure
relationship: has_part UBERON:0000087 ! inner cell mass
[Term]
id: UBERON:0000359
name: preputial gland
alt_id: UBERON:BTO_0001111-FMA_71652
def: "An exocrine gland that are located in front of the genitals of some mammals (including mice) and produce pheromones[WP]." [Wikipedia:Preputial_gland]
xref: FMA:71652
xref: ncithesaurus:Prepucial_Gland_MMHCC
is_a: UBERON:0001821 ! sebaceous gland
relationship: secretes UBERON:0003670 ! smegma
[Term]
id: UBERON:0000360
name: rectal gland
alt_id: UBERON:BTO_0001157-FMA_15724
is_obsolete: true
consider: UBERON:0004757
consider: UBERON:0004758
consider: UBERON:0004759
consider: UBERON:0004760
[Term]
id: UBERON:0000361
name: red bone marrow
alt_id: UBERON:BTO_0001160-FMA_74595
xref: BTO:0001160
xref: FMA:74595
is_a: UBERON:0002371 ! bone marrow
[Term]
id: UBERON:0000362
name: renal medulla
alt_id: UBERON:BTO_0001167-FMA_86327
def: "The renal medulla is the innermost part of the kidney. The renal medulla is split up into a number of sections, known as the renal pyramids. Blood enters into the kidney via the renal artery, which then splits up to form the arcuate arterioles. The arcuate arterioles each in turn branch into interlobular arterioles, which finally reach the glomeruli. At the glomerulus the blood reaches a highly disfavourable pressure gradient and a large exchange surface area, which forces the serum portion of the blood out of the vessel into the renal tubules. Flow continues through the renal tubules, including the proximal tubule, the Loop of Henle, and finally leaves the kidney by means of the collecting duct, leading to the renal ureter. The renal medulla (latin renes medulla = kidney middle) contains the structures of the nephrons responsible for maintaining the salt and water balance of the blood. The renal medulla is hypertonic to the filtrate in the nephron and aids in the reabsorption of water. [WP,unvetted]." [Wikipedia:Renal_medulla]
synonym: "kidney medulla" EXACT [OBOL:automatic]
synonym: "medulla of kidney" EXACT [OBOL:automatic]
synonym: "Renal medullae" EXACT [FMA:86327]
synonym: "Renal medullae set" EXACT [FMA:86327]
xref: BTO:0001167
xref: FMA:74268
xref: GAID:425
xref: galen:MedullaOfKidney
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg
xref: MA:0000373
xref: ncithesaurus:Renal_Medulla
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000958 ! implied link automatically realized ! medulla
relationship: part_of UBERON:0002113
intersection_of: UBERON:0000958 ! medulla
intersection_of: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0000363
name: reticuloendothelial system
alt_id: UBERON:BTO_0001174-FMA_84189
def: "A part of the immune system that consists of the phagocytic cells located in reticular connective tissue. The cells are primarily monocytes and macrophages, and they accumulate in lymph nodes and the spleen. The Kupffer cells of the liver and tissue histiocytes are also part of the RES. A lymphoma of the reticuloendothelial system is called reticuloendotheliosis[WP]." [Wikipedia:Reticuloendothelial_system]
synonym: "lymphoreticular system" EXACT [Wikipedia:Reticuloendothelial_system]
synonym: "mononuclear phagocyte system" EXACT [FMA:84189]
synonym: "RES" EXACT [Wikipedia:Reticuloendothelial_system]
xref: BTO:0001174
xref: FMA:84189
xref: GAID:1004
xref: ncithesaurus:Reticuloendothelial_System
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0002405 ! immune system
[Term]
id: UBERON:0000364
name: rootlet
alt_id: UBERON:BTO_0001192-FMA_76787
synonym: "Rootlets" EXACT [FMA:76787]
synonym: "Rootlets set" EXACT [FMA:76787]
xref: BTO:0001192
xref: FMA:76787
is_obsolete: true
[Term]
id: UBERON:0000365
name: urothelium
alt_id: UBERON:BTO_0001245-FMA_67695
def: "The urothelium is the epithelial tissue layer that lines much of the urinary tract, including the renal pelvis, the ureters, the bladder, and parts of the urethra." [Wikipedia:Urothelium]
comment: consider merging with transitional epithelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium'
synonym: "uroepithelium" EXACT [FMA:67695]
xref: BTO:0001245
xref: EMAPA:28089
xref: FMA:67695
xref: GAID:935
xref: ncithesaurus:Urothelium
is_a: UBERON:0005910 ! implied link automatically realized ! transitional epithelium
relationship: part_of UBERON:0001008
intersection_of: UBERON:0005910 ! transitional epithelium
intersection_of: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0000366
name: flexor muscle
alt_id: UBERON:BTO_0001257-FMA_74559
def: "A muscle that when contracted acts to bend a joint or limb in the body." [BTO:0001257]
synonym: "flexor" RELATED []
xref: BTO:0001257
xref: FMA:74559
xref: FMA:74999
xref: ZFA:0005271
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003661 ! implied link automatically realized ! limb muscle
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0000368
name: adductor brevis
alt_id: UBERON:BTO_0001288-FMA_22442
def: "The adductor brevis is a muscle in the thigh situated immediately behind the pectineus and adductor longus. It is somewhat triangular in form, and arises by a narrow origin from the outer surfaces of the superior and inferior rami of the pubis, between the gracilis and obturator externus. Its fibers, passing backward, lateralward, and downward, are inserted, by an aponeurosis, into the line leading from the lesser trochanter to the linea aspera and into the upper part of the linea aspera, immediately behind the pectineus and upper part of the adductor longus.[WP]." [Wikipedia:Adductor_brevis_muscle]
synonym: "adductor brevis muscle" EXACT []
synonym: "Musculus adductos brevis" EXACT [FMA:22442]
xref: BTO:0001288
xref: FMA:22442
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: OpenCyc:Mx4rv13lfJwpEbGdrcN5Y29ycA
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0004252 ! implied link automatically realized ! upper leg muscle
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0000369
name: corpus striatum
alt_id: UBERON:BTO_0001311-FMA_77616
def: "The corpus striatum (striated body) is a compound structure consisting of the caudate nucleus and the lentiform nucleus, which consists of the putamen and the globus pallidus[WP]." [Wikipedia:Corpus_striatum]
comment: The term has been used in a few different ways: * It is a pair of nuclear masses which form the basal ganglia, along with the subthalamic nucleus and the substantia nigra. * It may also refer to both the basal ganglia and internal capsule collectively.[2] * According to the 1917 version of Gray's Anatomy, it is the combination of the lentiform nucleus (also known as the lenticular nucleus) and the caudate nucleus * According to BrainInfo it is a part of the basal ganglia comprising the globus pallidus and striatum
xref: BTO:0001311
xref: EFO:0000381
xref: FMA:77616
xref: GAID:667
xref: HOG:0001175
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray656.png/200px-Gray656.png
xref: ncithesaurus:Corpus_Striatum
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0002420 ! basal ganglion
[Term]
id: UBERON:0000370
name: adductor magnus
alt_id: UBERON:BTO_0001312-FMA_22443
def: "The adductor magnus is a large triangular muscle, situated on the medial side of the thigh. The portion which arises from the ischiopubic ramus (a small part of the inferior ramus of the pubis, and the inferior ramus of the ischium) is called the 'adductor magnesius portion', and the portion arising from the tuberosity of the ischium is called the 'hamstring portion'. The hamstring portion is not considered part of the hamstring group of muscles, but it is adjacent to it.[WP]." [Wikipedia:Adductor_magnus_muscle]
synonym: "adductor magnus muscle" EXACT []
xref: BTO:0001312
xref: FMA:22443
xref: galen:AdductorMagnus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: OpenCyc:Mx4rvuSd6JwpEbGdrcN5Y29ycA
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0004252 ! implied link automatically realized ! upper leg muscle
relationship: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0000371
name: syncytiotrophoblast
alt_id: UBERON:BTO_0001335-FMA_83040
xref: BTO:0001335
xref: EHDAA:129
xref: EHDAA:91
xref: FMA:83040
xref: ncithesaurus:Syncytiotrophoblast
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000372
name: extensor digitorum brevis
alt_id: UBERON:BTO_0001337-FMA_51140
def: "a muscle on the upper surface of the foot that helps extend digits 2 through 4." [Wikipedia:Extensor_digitorum_brevis_muscle]
synonym: "extensor digitorum brevis muscle" EXACT []
xref: BTO:0001337
xref: FMA:51140
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray441.png/200px-Gray441.png
is_a: UBERON:0000311 ! extensor muscle
is_a: UBERON:0001498 ! implied link automatically realized ! muscle of foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0000373
name: tapetum of corpus callosum
alt_id: UBERON:BTO_0001350-FMA_77208
def: "On either side of the corpus collosum, the fibers radiate in the white substance and pass to the various parts of the cerebral cortex; those curving forward from the genu into the frontal lobe constitute the forceps anterior, and those curving backward into the occipital lobe, the forceps posterior. Between these two parts is the main body of the fibers which constitute the tapetum and extend laterally on either side into the temporal lobe, and cover in the central part of the lateral ventricle. [Wikipedia via Greys]" [Wikipedia:Tapetum_of_corpus_callosum]
comment: not to be confused with BTO:0001350 or GO:0048655-tapetal layer morphogenesis
xref: FMA:77208
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Gray733.png/200px-Gray733.png
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0000375
name: mandibular nerve
alt_id: UBERON:BTO_0001375-FMA_52996
def: "the motor and sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the auricle, the external acoustic meatus, tympanic membrane, temporal region, the cheek, the skin overlying the mandible, the anterior portion of the tongue, the floor of the mouth, lower teeth and gingiva and transmits motor information from the muscles of mastication, the mylohyoid muscle and digastric muscle and the muscles tensor tympani and tensor veli palatini." [MP:0009800, Wikipedia:Mandibular_nerve]
synonym: "Inferior maxillary nerve" EXACT [FMA:52996]
synonym: "Mandibular division [V3]" EXACT [FMA:52996]
synonym: "Mandibular division [Vc]" EXACT [FMA:52996]
synonym: "Mandibular division of fifth cranial nerve" EXACT [FMA:52996]
synonym: "Mandibular division of trigeminal nerve [Vc; V3]" EXACT [FMA:52996]
synonym: "Mandibular nerve [V3]" EXACT [FMA:52996]
synonym: "Mandibular nerve [Vc]" EXACT [FMA:52996]
synonym: "Nervus mandibularis [Vc; V3]" EXACT [FMA:52996]
synonym: "Third division of fifth cranial nerve" EXACT [FMA:52996]
synonym: "Third division of trigeminal nerve" EXACT [FMA:52996]
synonym: "trigeminal V nerve mandibular division" EXACT [MA:0001101]
xref: BTO:0001375
xref: FMA:52996
xref: GAID:834
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray781.png/200px-Gray781.png
xref: MA:0001101
xref: ncithesaurus:Inferior_Maxillary_Nerve
xref: OpenCyc:Mx4rvcQKSpwpEbGdrcN5Y29ycA
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system
relationship: branch_of UBERON:0001645 ! trigeminal nerve
[Term]
id: UBERON:0000376
name: hindlimb stylopod
alt_id: UBERON:BTO_0001376-FMA_24967
def: "In humans the thigh is the area between the pelvis and the knee. Anatomically, it is part of the lower limb. The single bone in the thigh is called the femur. This bone is very thick and strong (due to the high proportion of cortical bone), and forms a ball and socket joint at the hip, and a condylar joint at the knee. [WP,unvetted]." [Wikipedia:Thigh]
synonym: "hind limb stylopod" EXACT [OBOL:automatic]
synonym: "hindlimb stylopod" EXACT [OBOL:automatic]
synonym: "hindlimb stylopodium" EXACT [OBOL:automatic]
synonym: "inferior member stylopod" EXACT [OBOL:automatic]
synonym: "lower extremity stylopod" EXACT [OBOL:automatic]
synonym: "Proximal segment of free lower limb" EXACT [FMA:24967]
synonym: "stylopod of hind limb" EXACT [OBOL:automatic]
synonym: "stylopod of hindlimb" EXACT [OBOL:automatic]
synonym: "stylopod of inferior member" EXACT [OBOL:automatic]
synonym: "stylopod of lower extremity" EXACT [OBOL:automatic]
synonym: "stylopod of lower limb" EXACT []
synonym: "thigh" EXACT []
synonym: "upper leg" EXACT [MA:0000052]
xref: BTO:0001376
xref: EFO:0001943
xref: EHDAA:5171
xref: EHDAA:6200
xref: EHDAA2:0002130
xref: FMA:24967
xref: GAID:50
xref: galen:Thigh
xref: HOG:0000349
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4b/Gray1238.png/200px-Gray1238.png
xref: MA:0000052
xref: ncithesaurus:Thigh
xref: OpenCyc:Mx4rvVjN7JwpEbGdrcN5Y29ycA
is_a: UBERON:0002472 ! stylopod
relationship: part_of UBERON:0002103
intersection_of: UBERON:0002472 ! stylopod
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0000377
name: maxillary nerve
alt_id: UBERON:BTO_0001378-FMA_52724
def: "the sensory nerve subdivision of the trigeminal nerve that transmits sensory information from the palate, upper teeth and gingiva, the skin between the palpebral fissure and the mouth, and from the nasal cavity and maxillary sinuses." [MP:0009799, Wikipedia:Maxillary_nerve]
synonym: "Maxillary division [V2]" EXACT [FMA:52724]
synonym: "Maxillary division [Vb]" EXACT [FMA:52724]
synonym: "Maxillary division of fifth cranial nerve" EXACT [FMA:52724]
synonym: "Maxillary division of trigeminal nerve (Vb; V2)" EXACT [FMA:52724]
synonym: "Maxillary nerve [V2]" EXACT [FMA:52724]
synonym: "Maxillary nerve [Vb]" EXACT [FMA:52724]
synonym: "Nervus maxillaris (Vb; V2)" EXACT [FMA:52724]
synonym: "Second division of fifth cranial nerve" EXACT [FMA:52724]
synonym: "Second division of trigeminal nerve" EXACT [FMA:52724]
synonym: "trigeminal V nerve maxillary division" EXACT [MA:0001103]
xref: BTO:0001378
xref: FMA:52724
xref: GAID:836
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray779.png/200px-Gray779.png
xref: MA:0001103
xref: OpenCyc:Mx4rvWNU9JwpEbGdrcN5Y29ycA
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system
relationship: branch_of UBERON:0001645 ! trigeminal nerve
[Term]
id: UBERON:0000378
name: tongue muscle
alt_id: UBERON:BTO_0001386-FMA_46689
def: "the muscular portion of the tongue." [MP:0004136]
xref: BTO:0001386
xref: FMA:46689
xref: ncithesaurus:Tongue_Muscle
is_a: UBERON:0002376 ! muscle of head
is_a: UBERON:0003212 ! implied link automatically realized ! gustatory organ
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0000379
name: tracheal mucosa
alt_id: UBERON:BTO_0001390-FMA_7471
synonym: "mucosa of organ of trachea" EXACT [OBOL:automatic]
synonym: "mucosa of organ of windpipe" EXACT [OBOL:automatic]
synonym: "mucosa of trachea" EXACT [OBOL:automatic]
synonym: "mucosa of windpipe" EXACT [OBOL:automatic]
synonym: "Mucous membrane of trachea" EXACT [FMA:7471]
synonym: "mucous membrane of trachea" EXACT [OBOL:automatic]
synonym: "mucous membrane of windpipe" EXACT [OBOL:automatic]
synonym: "organ mucosa of trachea" EXACT [OBOL:automatic]
synonym: "organ mucosa of windpipe" EXACT [OBOL:automatic]
synonym: "trachea mucosa" EXACT [OBOL:automatic]
synonym: "trachea mucosa of organ" EXACT [OBOL:automatic]
synonym: "trachea mucous membrane" EXACT [OBOL:automatic]
synonym: "trachea organ mucosa" EXACT [OBOL:automatic]
synonym: "Tracheal mucous membrane" EXACT [FMA:7471]
synonym: "Tunica mucosa (tracheae)" EXACT [FMA:7471]
synonym: "windpipe mucosa" EXACT [OBOL:automatic]
synonym: "windpipe mucosa of organ" EXACT [OBOL:automatic]
synonym: "windpipe mucous membrane" EXACT [OBOL:automatic]
synonym: "windpipe organ mucosa" EXACT [OBOL:automatic]
xref: BTO:0001390
xref: FMA:7471
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa
relationship: part_of UBERON:0001005
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001005 ! respiratory airway
[Term]
id: UBERON:0000380
name: tuber
alt_id: UBERON:BTO_0001400-FMA_75430
comment: undefined in FMA. BTO and MIAA refers to plant structure only
xref: BTO:0001400
xref: EFO:0001015
xref: FMA:75430
xref: OpenCyc:Mx4raeDj5Cw8QdiT7e8pb2JzAA
is_obsolete: true
[Term]
id: UBERON:0000381
name: detrusor
alt_id: UBERON:BTO_0001453-FMA_68018
def: "The outer largely longitudinally arranged musculature of the bladder wall[BTO]. The fibers of the detrusor muscle arise from the posterior surface of the body of the pubis in both sexes (musculi pubovesicales), and in the male from the adjacent part of the prostate and its capsule. These fibers pass, in a more or less longitudinal manner, up the inferior surface of the bladder, over its apex, and then descend along its fundus to become attached to the prostate in the male, and to the front of the vagina in the female. At the sides of the bladder the fibers are arranged obliquely and intersect one another[WP]." [BTO:0001453, Wikipedia:Detrusor_urinae_muscle]
synonym: "detrusor muscle" EXACT [BTO:0001453]
synonym: "detrusor muscle of bladder" EXACT [EMAPA:28637]
synonym: "detrusor urinae muscle" EXACT [Wikipedia:Detrusor_urinae_muscle]
synonym: "muscularis propria of the urinary bladder" EXACT [Wikipedia:Detrusor_urinae_muscle]
xref: BTO:0001453
xref: EMAPA:28637
xref: FMA:68018
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_bladder.jpg/200px-Illu_bladder.jpg
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0004228 ! implied link automatically realized ! urinary bladder smooth muscle
relationship: part_of UBERON:0001256 ! wall of urinary bladder
[Term]
id: UBERON:0000382
name: apocrine sweat gland
alt_id: UBERON:BTO_0001458-FMA_59155
xref: BTO:0001458
xref: FMA:59155
xref: ncithesaurus:Apocrine_Sweat_Gland
is_a: UBERON:0001820 ! sweat gland
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0000383
name: musculature of body
alt_id: UBERON:BTO_0001485-FMA_72954
def: "The sum of all muscles in the body. There is only one set of muscles per organism" [GOC:cjm]
comment: we place the MA term musculature here, rather than under uberon:musculature, as this seems more appropriate given the structure of MA
synonym: "muscle system" EXACT []
synonym: "muscle system of body" EXACT []
synonym: "muscular system" EXACT [FMA:72954]
synonym: "set of all muscles" EXACT [FMA:72954]
synonym: "Set of muscles of body" EXACT [FMA:72954]
xref: AAO:0000307
xref: BTO:0001485
xref: EFO:0000801
xref: FBbt:00005069
xref: FMA:72954
xref: MA:0002888
xref: MAT:0000025
xref: MIAA:0000025
is_a: UBERON:0001015 ! musculature
[Term]
id: UBERON:0000385
name: labial gland
alt_id: UBERON:BTO_0001548-FMA_71613
comment: the label 'labial gland' refers to two distinct classes. From the BTO def: 1. One of the small tubular mucous and serous glands lying beneath the mucous membrane of the lips.n2. A salivary gland, or modification thereof, opening at the base of the labium in certain insects.
synonym: "Labial glands" EXACT [FMA:71613]
synonym: "Labial glands set" EXACT [FMA:71613]
xref: BTO:0001548
xref: FMA:71613
xref: HAO:0000449
is_obsolete: true
[Term]
id: UBERON:0000387
name: meniscus
alt_id: UBERON:BTO_0001592-FMA_76690
def: "crescent-shaped fibrocartilaginous structure present in the knee, acromioclavicular, sternoclavicular, and temporomandibular joints[2] that, in contrast to articular disks, only partly divides a joint cavity.[3] A small meniscus also occurs in the radio-carpal joint." [Wikipedia:Meniscus_(anatomy)]
xref: BTO:0001592
xref: FMA:76690
xref: galen:Meniscus
xref: ncithesaurus:Meniscus
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000388
name: epiglottis
alt_id: UBERON:BTO_0001628-FMA_55130
def: "the most superior of the laryngeal cartilages, which is found at the root of the tongue and folds back over the entrance to the larynx during swallowing." [MP:0002259]
xref: BTO:0001628
xref: FMA:55130
xref: GAID:111
xref: ncithesaurus:Epiglottis
xref: OpenCyc:Mx4rvVjxE5wpEbGdrcN5Y29ycA
is_a: UBERON:0000477 ! anatomical cluster
relationship: systemic_part_of UBERON:0001051 ! hypopharynx
[Term]
id: UBERON:0000389
name: lens cortex
alt_id: UBERON:BTO_0001632-FMA_58970
xref: BTO:0001632
xref: FMA:58970
is_a: UBERON:0001851 ! cortex
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000965 ! lens
[Term]
id: UBERON:0000390
name: lens nucleus
alt_id: UBERON:BTO_0001633-FMA_58971
xref: BTO:0001633
xref: FMA:58971
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000965 ! lens
[Term]
id: UBERON:0000391
name: leptomeninx
alt_id: UBERON:BTO_0001634-FMA_231515
xref: BTO:0001634
xref: FMA:231515
xref: NIF_GrossAnatomy:nlx_anat_090207
is_a: UBERON:0002360 ! meninx
[Term]
id: UBERON:0000392
name: longissimus
alt_id: UBERON:BTO_0001648-FMA_77178
def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus]
xref: BTO:0001648
xref: FMA:77178
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0000395
name: cochlear ganglion
alt_id: UBERON:BTO_0001688-FMA_53445
def: "group of nerve cells that serve the sense of hearing by sending a representation of sound from the cochlea to the brain. The cell bodies of the spiral ganglion neurons are found in the spiral structure of the cochlea[WP]. the group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain and resides on the cochlear part of the vestibulocochlear nerve (eighth cranial nerve)[MP]." [MP:0002855, Wikipedia:Spiral_ganglion]
synonym: "Corti's ganglion" EXACT [FMA:53445]
synonym: "Ganglion of Corti" EXACT [FMA:53445]
synonym: "Spiral ganglion" EXACT [FMA:53445]
synonym: "vestibulocochlear VIII ganglion cochlear component" EXACT [MA:0001085]
xref: BTO:0001688
xref: EHDAA2:0002198
xref: FMA:53445
xref: GAID:722
xref: HOG:0001183
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Gray903.png/200px-Gray903.png
xref: MA:0001085
is_a: UBERON:0001714 ! ganglion of cranial nerve
[Term]
id: UBERON:0000396
name: vallate papilla
alt_id: UBERON:BTO_0001705-FMA_71449
def: "Any one of the largest papilla of the tongue, 8 to 12 in number, arranged in the form of a V anterior to the sulcus terminalis of the tongue" [BTO:0001705]
synonym: "Vallate papilla of tongue" EXACT []
synonym: "Vallate papillae" EXACT []
xref: BTO:0001705
xref: FMA:54822
is_a: UBERON:0001726 ! papilla of tongue
[Term]
id: UBERON:0000397
name: colonic epithelium
alt_id: UBERON:BTO_0001709-FMA_17302
def: "An epithelium that is part of a colon [Obol]." [OBOL:automatic]
synonym: "colon epithelial tissue" EXACT [OBOL:automatic]
synonym: "Colon epithelium" EXACT [FMA:17302]
synonym: "colon epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of colon" EXACT [OBOL:automatic]
synonym: "epithelial tissue of large bowel" EXACT [OBOL:automatic]
synonym: "epithelium of colon" EXACT [OBOL:automatic]
synonym: "epithelium of large bowel" EXACT [OBOL:automatic]
synonym: "large bowel epithelial tissue" EXACT [OBOL:automatic]
synonym: "large bowel epithelium" EXACT [OBOL:automatic]
xref: BTO:0001709
xref: FMA:17302
xref: ZFA:0005128
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0001278 ! implied link automatically realized ! epithelium of large intestine
relationship: part_of UBERON:0001155
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0000398
name: sternal cartilage
alt_id: UBERON:BTO_0001721-FMA_32567
xref: BTO:0001721
xref: FMA:32567
is_a: UBERON:0002418 ! cartilage
[Term]
id: UBERON:0000399
name: jejunal mucosa
alt_id: UBERON:0003349
alt_id: UBERON:BTO_0001742-FMA_14949
def: "A mucosa that is part of a jejunum [Obol]." [OBOL:automatic]
synonym: "jejunal mucous membrane" EXACT [FMA:14949]
synonym: "jejunum mucosa" EXACT [FMA:14949]
synonym: "jejunum mucosa of organ" EXACT [OBOL:automatic]
synonym: "jejunum mucous membrane" EXACT [OBOL:automatic]
synonym: "jejunum organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of jejunum" EXACT [FMA:14949]
synonym: "mucosa of organ of jejunum" EXACT [OBOL:automatic]
synonym: "mucous membrane of jejunum" EXACT [OBOL:automatic]
synonym: "organ mucosa of jejunum" EXACT [OBOL:automatic]
xref: BTO:0001742
xref: EMAPA:27109
xref: EMAPA:27347
xref: FMA:14949
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0001204 ! implied link automatically realized ! mucosa of small intestine
relationship: part_of UBERON:0002115
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002115 ! jejunum
[Term]
id: UBERON:0000400
name: jejunal epithelium
alt_id: UBERON:BTO_0001743-FMA_17232
xref: BTO:0001743
xref: FMA:17232
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0000401
name: mandibular ramus
alt_id: UBERON:BTO_0001751-FMA_52828
xref: BTO:0001751
xref: FMA:52828
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000402
name: nasal vestibule
alt_id: UBERON:BTO_0001761-FMA_59644
def: "The nasal vestibule is the most anterior part of the nasal cavity. It's enclosed by the cartilages of nose and lined by the same epithelium of the skin. The other part of the nasal cavity, which is lined by the respiratory epithelium, is called nasal cavity proper. [WP,unvetted]." [Wikipedia:Nasal_vestibule]
synonym: "vestibular part of nasal cavity" EXACT [FMA:59644]
xref: BTO:0001761
xref: FMA:59644
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/Gray994.png/200px-Gray994.png
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001707 ! nasal cavity
[Term]
id: UBERON:0000403
name: scalp
alt_id: UBERON:BTO_0001809-FMA_46494
def: "The scalp is the anatomical area bordered by the face anteriorly and the neck to the sides and posteriorly. [WP,unvetted]." [Wikipedia:Scalp]
xref: BTO:0001809
xref: FMA:46494
xref: GAID:80
xref: galen:Scalp
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Double_cowlick.jpg/200px-Double_cowlick.jpg
xref: OpenCyc:Mx4rwNtaz5wpEbGdrcN5Y29ycA
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0000407
name: sympathetic trunk
alt_id: UBERON:BTO_0001834-FMA_6258
def: "One of a a paired bundle of nerve fibers that run from the base of the skull to the coccyx." [Wikipedia:Sympathetic_trunk]
synonym: "gangliated cord" EXACT [Wikipedia:Sympathetic_trunk]
synonym: "sympathetic chain" EXACT [FMA:6258]
synonym: "sympathetic ganglionic chain" EXACT [Wikipedia:Sympathetic_trunk]
xref: BTO:0001834
xref: FMA:6258
xref: XAO:0000211
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000013 ! sympathetic nervous system
[Term]
id: UBERON:0000408
name: vertebral ganglion
alt_id: UBERON:BTO_0001835-FMA_6572
synonym: "Intermediate ganglion" EXACT [FMA:6572]
xref: BTO:0001835
xref: FMA:6572
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001991 ! cervical ganglion
[Term]
id: UBERON:0000409
name: serous gland
alt_id: UBERON:BTO_0001837-FMA_62889
def: "glands that secrete watery albuminous material that often contains enzymes." [MP:0008052]
xref: BTO:0001837
xref: FMA:62889
is_a: UBERON:0002365 ! exocrine gland
[Term]
id: UBERON:0000410
name: bronchial mucosa
alt_id: UBERON:BTO_0001846-FMA_62652
def: "A mucosa that is part of a bronchus [Obol]." [OBOL:automatic]
synonym: "bronchi mucosa" EXACT [OBOL:automatic]
synonym: "bronchi mucosa of organ" EXACT [OBOL:automatic]
synonym: "bronchi mucous membrane" EXACT [OBOL:automatic]
synonym: "bronchi organ mucosa" EXACT [OBOL:automatic]
synonym: "bronchial trunk mucosa" EXACT [OBOL:automatic]
synonym: "bronchial trunk mucosa of organ" EXACT [OBOL:automatic]
synonym: "bronchial trunk mucous membrane" EXACT [OBOL:automatic]
synonym: "bronchial trunk organ mucosa" EXACT [OBOL:automatic]
synonym: "bronchus mucosa" EXACT [OBOL:automatic]
synonym: "bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bronchi" EXACT [OBOL:automatic]
synonym: "mucosa of bronchial trunk" EXACT [OBOL:automatic]
synonym: "mucosa of bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bronchi" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bronchial trunk" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchi" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchial trunk" EXACT [OBOL:automatic]
synonym: "Mucous membrane of bronchus" EXACT [FMA:62652]
synonym: "mucous membrane of bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchi" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchial trunk" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchus" EXACT [OBOL:automatic]
xref: BTO:0001846
xref: FMA:62652
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa
relationship: part_of UBERON:0002185
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0000411
name: visual cortex
alt_id: UBERON:BTO_0001857-FMA_242644
def: "Area including V1 and extrastriate visual cortical areas such as V2, V3, V4, and V5." [Wikipedia:Visual_cortex]
synonym: "V1" EXACT [Wikipedia:Visual_cortex]
xref: BTO:0001857
xref: EFO:0000916
xref: FMA:242644
xref: GAID:679
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Brodmann_areas_17_18_19.png/200px-Brodmann_areas_17_18_19.png
is_a: UBERON:0002619 ! regional part of cerebral cortex
[Term]
id: UBERON:0000412
name: dermal papilla
alt_id: UBERON:BTO_0001858-FMA_70737
def: "small, nipple-like extensions (or interdigitations) of the dermis into the epidermis. They can be observed at the surface of the skin in hands and feet as epidermal or papillary ridges (colloquially known as fingerprints). The dermal papillae nourishes all hair follicles and bring food and oxygen to the lower layers of epidermal cells. The pattern of ridges they produce in hands and feet are inherited features that are developed before birth. They remain unaltered (except size) throughout life, and are therefore used for fingerprints. The dermal papillae are part of the uppermost layer of the dermis, the papillary dermis, and the ridges they form greatly increase the surface area between the dermis and epidermis. Because the dermis' main function is to support the epidermis, this greatly increases the exchange of oxygen, nutrients, and waste products between these two layers. Additionally, the increase in surface area prevent the dermal and epidermal layers from separating from each others by strengthening the junction between them. With age, the papillae tend to flatten and sometimes increase in numbers. Dermal papillae also play a pivotal role in hair formation, growth and, cycling" [Wikipedia:Dermal_papillae]
synonym: "dermal papillae" EXACT PLURAL []
synonym: "follicular papilla" EXACT [FMA:70737]
synonym: "hair follicle dermal papilla" RELATED [MP:0010687]
xref: BTO:0001858
xref: FMA:70737
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Skin.jpg/200px-Skin.jpg
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001992 ! papillary layer of dermis
[Term]
id: UBERON:0000414
name: mucous gland
alt_id: UBERON:BTO_0001979-FMA_62888
def: "Mucous glands, found in several different parts of the body, typically stain lighter than serous glands during standard histological preparation. Most are multicellular, but goblet cell are single-celled glands. [WP,unvetted]." [Wikipedia:Mucous_gland]
xref: BTO:0001979
xref: FMA:62888
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray1021.png/200px-Gray1021.png
is_a: UBERON:0002365 ! exocrine gland
[Term]
id: UBERON:0000415
name: artery wall
alt_id: UBERON:BTO_0002009-FMA_14155
def: "An anatomical wall that is part of an artery [Obol]." [OBOL:automatic]
synonym: "Arterial wall" EXACT [FMA:14155]
xref: BTO:0002009
xref: FMA:14155
xref: galen:ArterialWall
is_a: UBERON:0000060 ! implied link automatically realized ! anatomical wall
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001637
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0001637 ! artery
[Term]
id: UBERON:0000416
name: subdural space
alt_id: UBERON:BTO_0002082-FMA_83803
xref: BTO:0002082
xref: FMA:83803
xref: GAID:692
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0000417
name: primitive endoderm
alt_id: UBERON:0003226
alt_id: UBERON:BTO_0002123-FMA_85520
xref: BTO:0002123
xref: EHDAA:44
xref: EHDAA:79
xref: EMAPA:16051
xref: EMAPA:16063
xref: FMA:85520
is_a: UBERON:0000925 ! endoderm
[Term]
id: UBERON:0000418
name: tubercle
alt_id: UBERON:BTO_0002173-FMA_75429
is_obsolete: true
[Term]
id: UBERON:0000420
name: myoepithelium
alt_id: UBERON:BTO_0002308-FMA_67805
xref: BTO:0002308
xref: FMA:67805
is_a: UBERON:0000488 ! atypical epithelium
[Term]
id: UBERON:0000423
name: eccrine sweat gland
alt_id: UBERON:BTO_0002323-FMA_59154
synonym: "Eccrine gland" EXACT [FMA:59154]
xref: BTO:0002323
xref: FMA:59154
xref: GAID:945
xref: ncithesaurus:Eccrine_Sweat_Gland
is_a: UBERON:0001820 ! sweat gland
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0000424
name: gastric pit
alt_id: UBERON:0000425
alt_id: UBERON:BTO_0002364-FMA_62947
xref: BTO:0002364
xref: FMA:62947
xref: ncithesaurus:Gastric_Pit
is_a: UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0000426
name: extravillous trophoblast
alt_id: UBERON:BTO_0002366-FMA_86561
xref: BTO:0002366
xref: FMA:86561
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000427
name: cytotrophoblastic cell
xref: ncithesaurus:Cytotrophoblastic_Cell
is_obsolete: true
[Term]
id: UBERON:0000428
name: prostate epithelium
alt_id: UBERON:0002452
alt_id: UBERON:BTO_0002397-FMA_66812
def: "the prostate epithelium." [MP:0001168]
comment: TODO - check 2 FMA IDs
synonym: "epithelial tissue of prostate" EXACT [OBOL:automatic]
synonym: "epithelial tissue of prostate gland" EXACT [OBOL:automatic]
synonym: "epithelium of prostate" EXACT [OBOL:automatic]
synonym: "epithelium of prostate gland" EXACT [OBOL:automatic]
synonym: "prostate epithelial tissue" EXACT [OBOL:automatic]
synonym: "prostate gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "prostate gland epithelium" EXACT []
synonym: "prostatic gland epithelium" EXACT []
xref: BTO:0002397
xref: FMA:66812
xref: FMA:79643
xref: MA:0001737
xref: ncithesaurus:Prostatic_Epithelium
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium
relationship: part_of UBERON:0002367
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0000429
name: enteric plexus
alt_id: UBERON:BTO_0002437-FMA_77597
def: "A plexus of autonomic nerve fibers within the wall of the digestive tube, and made up of the submucosal, myenteric, and subserosal plexuses; it contains visceral afferent fibers, sympathetic postganglionic fibers, parasympathetic preganglionic and postganglionic fibers, and parasympathetic postganglionic cell bodies." [BTO:0002437]
comment: TODO - add subserosal plexus?
synonym: "enteric nerve plexus" EXACT [FMA:77597]
synonym: "plexus entericus" EXACT [BTO:0002437]
synonym: "sympathetic enteric nerve plexus" EXACT [FMA:77597]
xref: BTO:0002437
xref: FMA:77597
is_a: UBERON:0001816 ! autonomic nerve plexus
relationship: part_of UBERON:0002005 ! enteric nervous system
[Term]
id: UBERON:0000430
name: ventral intermediate nucleus of thalamus
alt_id: UBERON:BTO_0002469-FMA_84347
xref: BTO:0002469
xref: FMA:84347
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0000431
name: ventral medial complex of thalamus
alt_id: UBERON:BTO_0002470-FMA_77795
synonym: "ventral medial complex of thalamus" EXACT [FMA:77795]
synonym: "ventral medial nuclei of thalamus" EXACT [FMA:77795]
xref: BTO:0002470
xref: FMA:77795
xref: GAID:666
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000432
name: endopeduncular nucleus
alt_id: UBERON:BTO_0002475-FMA_77691
xref: BTO:0002475
xref: FMA:77691
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0000433
name: posterior paraventricular nucleus of thalamus
alt_id: UBERON:BTO_0002477-FMA_76961
xref: BTO:0002477
xref: FMA:76961
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0000434
name: anterior paraventricular nucleus of thalamus
alt_id: UBERON:BTO_0002478-FMA_76962
xref: BTO:0002478
xref: FMA:76962
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0000435
name: lateral tuberal nucleus
alt_id: UBERON:BTO_0002481-FMA_62336
synonym: "Lateral tuberal hypothalamic nuclei" EXACT [FMA:62336]
synonym: "Lateral tuberal nuclei" EXACT [FMA:62336]
xref: BTO:0002481
xref: FMA:62336
xref: NIF_GrossAnatomy:birnlex_1206
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0002430 ! lateral hypothalamic area
[Term]
id: UBERON:0000437
name: arachnoid barrier layer
alt_id: UBERON:BTO_0002498-FMA_231559
xref: BTO:0002498
xref: FMA:231559
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002362 ! arachnoid mater
[Term]
id: UBERON:0000438
name: set of arachnoid trabecula
alt_id: UBERON:BTO_0002500-FMA_77761
synonym: "Arachnoid trabeculae set" EXACT [FMA:77761]
xref: BTO:0002500
xref: FMA:77761
is_obsolete: true
[Term]
id: UBERON:0000439
name: arachnoid trabecula
alt_id: UBERON:BTO_0002500-FMA_83979
def: "a small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue." [GO:0060343]
synonym: "trabecula arachnoideum" RELATED []
xref: BTO:0002500
xref: FMA:83979
is_a: UBERON:0000440 ! trabecula
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002362 ! arachnoid mater
[Term]
id: UBERON:0000440
name: trabecula
alt_id: UBERON:BTO_0002501-FMA_85273
def: "A small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue. On histological section, a trabecula can look like a septum, but in three dimensions they are topologically distinct, with trabeculae being roughly rod or pillar-shaped and septa being sheet-like.. Trabeculae are usually composed of dense fibrous tissue, i.e. mainly of collagen, and in most cases provide mechanical strengthening or stiffening to a soft solid organ, such as the spleen. They can be composed of other materials, such as bone or muscle[WP]." [Wikipedia:Trabecula]
xref: BTO:0002501
xref: FMA:85273
xref: ZFA:0001321
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000442
name: right testicular vein
alt_id: UBERON:BTO_0002679-FMA_14341
synonym: "Vena testicularis (adrenalis) dextra" EXACT [FMA:14341]
xref: BTO:0002679
xref: FMA:14341
is_a: UBERON:0001144 ! testicular vein
[Term]
id: UBERON:0000443
name: left testicular vein
alt_id: UBERON:BTO_0002680-FMA_14345
def: "A testicular vein that is part of a left side of organism [Obol]." [OBOL:automatic]
xref: BTO:0002680
xref: FMA:14345
is_a: UBERON:0001144 ! implied link automatically realized ! testicular vein
relationship: part_of UBERON:0004531
intersection_of: UBERON:0001144 ! testicular vein
intersection_of: part_of UBERON:0004531 ! left side of organism
[Term]
id: UBERON:0000444
name: lymphoid follicle
alt_id: UBERON:BTO_0002684-FMA_55222
synonym: "lymph node follicle" EXACT [MA:0000742]
synonym: "lymphoid nodule" EXACT [FMA:55222]
synonym: "nodular lymphoid tissue" EXACT [FMA:55222]
xref: BTO:0002684
xref: FMA:55222
xref: MA:0000742
xref: ncithesaurus:Lymphoid_Follicle
is_a: UBERON:0001744 ! lymphoid tissue
[Term]
id: UBERON:0000445
name: habenular trigone
alt_id: UBERON:BTO_0002700-FMA_74868
def: "The habenular trigone is a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the taenia thalami. It contains a group of nerve cells termed the ganglion habenulC&. Fibers enter it from the stalk of the pineal body, and others, forming what is termed the habenular commissure, pass across the middle line to the corresponding ganglion of the opposite side. Most of its fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion." [Wikipedia:Habenular_trigone]
comment: superclass in BTO is thalamic nucleus, not present in most ontologies
synonym: "trigone of habenulae" RELATED [BTO:0002700]
xref: BTO:0002700
xref: FMA:74868
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0001904 ! habenula
[Term]
id: UBERON:0000446
name: septum of telencephalon
alt_id: UBERON:BTO_0002705-FMA_61842
def: "Subdivision of the telencephalon on the midline between the lateral ventricles which contains the septum pellucidum and the septal nuclei[FMA]." [FMA:61842]
synonym: "septal area" EXACT [FMA:61842]
synonym: "septum" BROAD [NIF_GrossAnatomy:birnlex_963]
synonym: "septum (NN)" EXACT [FMA:61842]
synonym: "telencephalon septum" EXACT [FMA:61842]
xref: BTO:0002705
xref: FMA:61842
xref: MA:0000924
xref: NIF_GrossAnatomy:birnlex_963
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0000449
name: decidual cell
alt_id: UBERON:BTO_0002770-FMA_86480
def: "Before the fertilized ovum reaches the uterus, the mucous membrane of the body of the uterus undergoes important changes and is then known as the decidua. The thickness and vascularity of the mucous membrane are greatly increased; its glands are elongated and open on its free surface by funnel-shaped orifices, while their deeper portions are tortuous and dilated into irregular spaces. The interglandular tissue is also increased in quantity, and is crowded with large round, oval, or polygonal cells, termed decidual cells. Their enlargement is due to glycogen and lipid accumulation in the cytoplasm allowing these cells to provide a rich source of nutrition for the developing embryo. [WP,unvetted]." [Wikipedia:Decidual_cells]
xref: BTO:0002770
xref: FMA:86480
xref: ncithesaurus:Decidual_Cell
is_a: UBERON:0000478 ! extraembryonic structure
[Term]
id: UBERON:0000450
name: corpus albicans
alt_id: UBERON:BTO_0002784-FMA_18620
synonym: "Corpus albicans of ovary" EXACT [FMA:18620]
xref: BTO:0002784
xref: FMA:18620
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000451
name: prefrontal cortex
alt_id: UBERON:BTO_0002807-FMA_224850
def: "The prefrontal cortex (PFC) is the anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas. This brain region has been implicated in planning complex cognitive behaviors, personality expression, decision making and moderating correct social behavior. The basic activity of this brain region is considered to be orchestration of thoughts and actions in accordance with internal goals. The most typical psychological term for functions carried out by the pre-frontal cortex area is executive function. Executive function relates to abilities to differentiate among conflicting thoughts, determine good and bad, better and best, same and different, future consequences of current activities, working toward a defined goal, prediction of outcomes, expectation based on actions, and social 'control' (the ability to suppress urges that, if not suppressed, could lead to socially-unacceptable outcomes). Many authors have indicated an integral link between a person's personality and the functions of the prefrontal cortex. [WP,unvetted]." [Wikipedia:Prefrontal_cortex]
comment: TODO - check MA
synonym: "frontal association cortex" RELATED ATTRIBUTION_REQUIRED [MA:0000906]
synonym: "prefrontal association cortex" EXACT [FMA:224850]
xref: BTO:0002807
xref: EFO:0001384
xref: FMA:224850
xref: GAID:676
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Gray726-Brodman-prefrontal.svg/200px-Gray726-Brodman-prefrontal.svg.png
xref: MA:0000906
xref: NIF_GrossAnatomy:nlx_anat_090801
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000453
name: decidua basalis
alt_id: UBERON:BTO_0002819-FMA_86477
xref: BTO:0002819
xref: EFO:0001918
xref: FMA:86477
xref: MA:0002905
xref: ncithesaurus:Decidua_Basalis
is_a: UBERON:0000478 ! extraembryonic structure
[Term]
id: UBERON:0000454
name: cerebral subcortex
alt_id: UBERON:BTO_0002858-FMA_242188
synonym: "Cerebral medulla" EXACT [FMA:242188]
xref: BTO:0002858
xref: FMA:242188
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000456
name: secretion
alt_id: UBERON:BTO_0002979-FMA_9675
xref: BTO:0002979
xref: FMA:9675
xref: galen:Secretion
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000457
name: cavernous artery
alt_id: UBERON:BTO_0002996-FMA_70527
synonym: "Cavernous branch of cavernous part of internal carotid artery" EXACT [FMA:70527]
xref: BTO:0002996
xref: FMA:70527
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0000458
name: endocervix
alt_id: UBERON:BTO_0003002-FMA_86485
xref: BTO:0003002
xref: FMA:86485
xref: ncithesaurus:Endocervix
is_a: UBERON:0000063 ! organ segment
[Term]
id: UBERON:0000459
name: uterine wall
alt_id: UBERON:BTO_0003083-FMA_17560
def: "An anatomical wall that is part of a uterus [Obol]." [OBOL:automatic]
synonym: "anatomical wall of uterus" EXACT [OBOL:automatic]
synonym: "uterus anatomical wall" EXACT [OBOL:automatic]
synonym: "uterus wall" EXACT [OBOL:automatic]
synonym: "wall of uterus" EXACT [OBOL:automatic]
xref: BTO:0003083
xref: FMA:17560
is_a: UBERON:0000060 ! implied link automatically realized ! anatomical wall
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000995
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000995 ! uterus
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0000460
name: major vestibular gland
alt_id: UBERON:BTO_0003115-FMA_9598
def: "Gland found in pairs located slightly below and to the left and right of the opening of the vagina in women. Bartholin's glands are homologous to bulbourethral glands in males. However, while Bartholin's glands are located in the superficial perineal pouch, bulbourethral glands are located in the deep perineal pouch. They secrete mucus to provide vaginal lubrication." [Wikipedia:Bartholin's_glands]
synonym: "Bartholin's gland" EXACT [FMA:9598]
synonym: "Duverney's gland" EXACT [FMA:9598]
synonym: "Tiedemann's gland" EXACT [FMA:9598]
synonym: "Vulvovaginal gland" EXACT [FMA:9598]
xref: BTO:0003115
xref: FMA:9598
xref: GAID:384
xref: MA:0002936
is_a: UBERON:0002530 ! gland
is_a: UBERON:0003297 ! implied link automatically realized ! gland of integumental system
relationship: part_of UBERON:0002416 ! integumental system
[Term]
id: UBERON:0000461
name: minor vestibular gland
alt_id: UBERON:BTO_0003116-FMA_20019
synonym: "Glandula vestibular minor" EXACT [FMA:20019]
xref: BTO:0003116
xref: FMA:20019
is_a: UBERON:0002530 ! gland
[Term]
id: UBERON:0000462
name: villus
is_obsolete: true
[Term]
id: UBERON:0000463
name: portion of organism substance
alt_id: UBERON:CARO_0000004-FBbt_00007019
def: "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [CARO:MAH]
comment: This class was created automatically from a combination of ontologies
xref: AEO:0000004
xref: BILA:0000004
xref: CARO:0000004
xref: EHDAA2:0003004
xref: FBbt:00007019
xref: FMA:9669
xref: HAO:0000004
xref: ZFA:0001487
is_a: UBERON:0000465 ! material anatomical entity
disjoint_from: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000464
name: anatomical space
alt_id: UBERON:CARO_0000005-FBbt_00007017-FMA_5897-ZFA_0001643
def: "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures. // Non-material physical anatomical entity of three dimensions, which is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more body substances or anatomical structures. Examples: celom, thoracic cavity, lesser sac of peritoneum, cavity of right atrium, lumen of aorta, mediastinum, anterior compartment of forearm, intervertebral foramen. // Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: AEO:0000005
xref: BILA:0000005
xref: CARO:0000005
xref: EHDAA2:0003005
xref: FBbt:00007017
xref: FMA:5897
xref: HAO:0000005
xref: TAO:0001668
xref: XAO:0003190
xref: ZFA:0001643
is_a: UBERON:0000466 ! immaterial anatomical entity
relationship: surrounded_by UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000465
name: material anatomical entity
alt_id: UBERON:CARO_0000006-FBbt_00007016-FMA_67165-ZFA_0001487
def: "Anatomical entity that has mass." [CARO:MAH]
comment: This class was created automatically from a combination of ontologies
xref: AEO:0000006
xref: BILA:0000006
xref: CARO:0000006
xref: EHDAA2:0003006
xref: FBbt:00007016
xref: FMA:67165
xref: HAO:0000006
xref: TAO:0001836
is_a: UBERON:0001062 ! anatomical entity
[Term]
id: UBERON:0000466
name: immaterial anatomical entity
alt_id: UBERON:CARO_0000007-FBbt_00007015
def: "Anatomical entity that has no mass." [CARO:MAH]
comment: This class was created automatically from a combination of ontologies
xref: AEO:0000007
xref: BILA:0000007
xref: CARO:0000007
xref: EHDAA2:0003007
xref: FBbt:00007015
xref: FMA:67112
xref: HAO:0000007
is_a: UBERON:0001062 ! anatomical entity
disjoint_from: UBERON:0000465 ! material anatomical entity
[Term]
id: UBERON:0000467
name: anatomical system
alt_id: UBERON:CARO_0000011-XAO_0003002-ZFA_0001439
alt_id: UBERON:FBbt_00004856-FBbt_00004969-FMA_7149-FMA_72979-MA_0000003-MA_0000014-MIAA_0000033-WBbt_0005730-XAO_0000176
def: "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity[CARO]. A group of organs that work together to perform a certain task [Wikipedia]." [CARO:0000011, CARO:MAH, Wikipedia:Organ_system, ZFIN:curator]
subset: uberon_slim
synonym: "organ system" EXACT []
xref: AAO:0000007
xref: AEO:0000011
xref: BILA:0000011
xref: CARO:0000011
xref: EHDAA:392
xref: EHDAA2:0001330
xref: FBbt:00004856
xref: FMA:7149
xref: galen:AnatomicalSystem
xref: HAO:0000011
xref: MA:0000003
xref: ncithesaurus:Organ_System
xref: OpenCyc:Mx4rCWM0QCtDEdyAAADggVbxzQ
xref: TAO:0001439
xref: XAO:0003002
xref: ZFA:0001439
is_a: UBERON:0000480 ! anatomical group
relationship: part_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0000468
name: multi-cellular organism
alt_id: UBERON:CARO_0000012-XAO_0003004
def: "Anatomical structure that is an individual member of a species and consists of more than one cell." [CARO:0000012, CARO:MAH, Wikipedia:Multi-cellular_organism]
comment: TODO - split body and mc organism? body continues after death stage
subset: uberon_slim
synonym: "body" EXACT []
synonym: "whole organism" EXACT []
xref: AEO:0000103
xref: AEO:0000191
xref: BILA:0000012
xref: CARO:0000012
xref: EHDAA2:0003103
xref: FMA:256135
xref: HAO:0000012
xref: MA:0002405
xref: ncithesaurus:Whole_Organism
xref: NIF_GrossAnatomy:birnlex_18
xref: TAO:0001094
xref: XAO:0003004
xref: ZFA:0001094
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000470
name: cell part
alt_id: UBERON:CARO_0000014-FBbt_00007012-FMA_86454
def: "Anatomical structure that is a direct part of the cell." [CARO:MAH]
comment: This class was created automatically from a combination of ontologies
synonym: "cell component" EXACT []
xref: BILA:0000014
xref: CARO:0000014
xref: FBbt:00007012
xref: FMA:86454
xref: GO:0044464
xref: HAO:0000014
xref: ncithesaurus:Cell_Part
xref: NIF_Subcellular:sao-1337158144
xref: OpenCyc:Mx4rwQwkcZwpEbGdrcN5Y29ycA
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000471
name: compound organ component
alt_id: UBERON:CARO_0000019-XAO_0003039-ZFA_0001489
def: "Multi-tissue structure that is part of a compound organ. // Multi-tissue structure that is part of a compound organ. // Multi-tissue structure that is part of a compound organ." [CARO:0000019, CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: AEO:0000019
xref: BILA:0000019
xref: CARO:0000019
xref: EHDAA2:0003019
xref: HAO:0000019
xref: TAO:0001489
xref: XAO:0003039
xref: ZFA:0001489
is_a: UBERON:0000481 ! multi-tissue structure
[Term]
id: UBERON:0000472
name: simple organ
alt_id: UBERON:CARO_0000021-XAO_0003038-ZFA_0001492
def: "Multi-tissue structure that is not part of a compound organ. // Multi-tissue structure that is not part of a compound organ. // Multi-tissue structure that is not part of a compound organ." [CARO:0000021, CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: AEO:0000190
xref: BILA:0000021
xref: CARO:0000021
xref: EHDAA2:0003190
xref: HAO:0000021
xref: TAO:0001492
xref: XAO:0003038
xref: ZFA:0001492
is_a: UBERON:0000481 ! multi-tissue structure
[Term]
id: UBERON:0000473
name: testis
alt_id: UBERON:0002117
alt_id: UBERON:CARO_0000027-FBbt_00004927-FBbt_00004928-FBbt_00007004-FMA_45664-FMA_7210-MA_0000396-MA_0000411-MIAA_0000029-MIAA_0000132-WBbt_0006794-XAO_0000155-XAO_0000157-XAO_0003006-ZFA_0000242-ZFA_0000598
def: "gonad of a male animal, produces and releases sperm." [Wikipedia:Testis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "genitalia of male organism gonad" EXACT [OBOL:automatic]
synonym: "genitalia of male organism gonada" EXACT [OBOL:automatic]
synonym: "gonad of genitalia of male organism" EXACT [OBOL:automatic]
synonym: "gonad of male genitalia" EXACT [OBOL:automatic]
synonym: "gonad of male genitals" EXACT [OBOL:automatic]
synonym: "gonad of male organism genitalia" EXACT [OBOL:automatic]
synonym: "gonad of male organism reproductive system" EXACT [OBOL:automatic]
synonym: "gonad of male reproductive system" EXACT [OBOL:automatic]
synonym: "gonad of reproductive system of male organism" EXACT [OBOL:automatic]
synonym: "gonada of genitalia of male organism" EXACT [OBOL:automatic]
synonym: "gonada of male genitalia" EXACT [OBOL:automatic]
synonym: "gonada of male genitals" EXACT [OBOL:automatic]
synonym: "gonada of male organism genitalia" EXACT [OBOL:automatic]
synonym: "gonada of male organism reproductive system" EXACT [OBOL:automatic]
synonym: "gonada of male reproductive system" EXACT [OBOL:automatic]
synonym: "gonada of reproductive system of male organism" EXACT [OBOL:automatic]
synonym: "male genitalia gonad" EXACT [OBOL:automatic]
synonym: "male genitalia gonada" EXACT [OBOL:automatic]
synonym: "male genitals gonad" EXACT [OBOL:automatic]
synonym: "male gonad" EXACT [OBOL:automatic]
synonym: "male organism genitalia gonad" EXACT [OBOL:automatic]
synonym: "male organism genitalia gonada" EXACT [OBOL:automatic]
synonym: "male organism reproductive system gonad" EXACT [OBOL:automatic]
synonym: "male organism reproductive system gonada" EXACT [OBOL:automatic]
synonym: "male reproductive system gonad" EXACT [OBOL:automatic]
synonym: "male reproductive system gonada" EXACT [OBOL:automatic]
synonym: "reproductive system of male organism gonad" EXACT [OBOL:automatic]
synonym: "reproductive system of male organism gonada" EXACT [OBOL:automatic]
synonym: "testes" RELATED PLURAL []
xref: AAO:0000606
xref: BILA:0000124
xref: BTO:0001363
xref: EFO:0000984
xref: EHDAA:8146
xref: EHDAA2:0002007
xref: FBbt:00004928
xref: FMA:7210
xref: GAID:396
xref: galen:Testis
xref: HAO:0001007
xref: HOG:0000252
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Gray1144.png/200px-Gray1144.png
xref: MA:0000411
xref: MAT:0000132
xref: MIAA:0000132
xref: ncithesaurus:Testis
xref: OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA
xref: TAO:0000598
xref: WBbt:0006794
xref: XAO:0000157
xref: ZFA:0000598
is_a: UBERON:0000991 ! gonad
is_a: UBERON:0003135 ! implied link automatically realized ! male reproductive organ
relationship: part_of UBERON:0000079
intersection_of: UBERON:0000991 ! gonad
intersection_of: part_of UBERON:0000079 ! male reproductive system
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0000474
name: female reproductive system
alt_id: UBERON:CARO_0000028-FBbt_00004864-FBbt_00007011-FMA_45663-MA_0000381-MIAA_0000028-XAO_0000156-XAO_0003005-ZFA_0000303
def: "The organs of the female reproductive system." [Wikipedia:Female_genitalia]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "female genital system" RELATED []
synonym: "female genitalia" RELATED []
synonym: "female organism genitalia" EXACT [OBOL:automatic]
synonym: "female organism reproductive system" EXACT [OBOL:automatic]
synonym: "genitalia of female organism" EXACT [OBOL:automatic]
synonym: "reproductive system of female organism" EXACT [OBOL:automatic]
xref: BTO:0000083
xref: EFO:0000969
xref: EHDAA2:0000506
xref: FBbt:00004827
xref: FBbt:00004864
xref: FMA:45663
xref: GAID:364
xref: HAO:0000324
xref: HOG:0000726
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Scheme_female_reproductive_system-en.svg/200px-Scheme_female_reproductive_system-en.svg.png
xref: MA:0000381
xref: MIAA:0000028
xref: ncithesaurus:Female_Reproductive_System
xref: OpenCyc:Mx4rvVipTZwpEbGdrcN5Y29ycA
xref: XAO:0000156
is_a: UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0003100
intersection_of: UBERON:0000990 ! reproductive system
intersection_of: part_of UBERON:0003100 ! female organism
relationship: part_of UBERON:0003100 ! female organism
[Term]
id: UBERON:0000475
name: organism subdivision
alt_id: UBERON:CARO_0000032-FBbt_00007009-FMA_67504-MIAA_0000293-XAO_0003013-ZFA_0001308
def: "Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism." [CARO:0000032, CARO:MAH, Wikipedia:Body_part, ZFIN:curator]
subset: uberon_slim
synonym: "anatomic region" EXACT []
synonym: "anatomical site" RELATED []
synonym: "body part" EXACT []
synonym: "principal body part subdivision" EXACT []
synonym: "subdivision of cardinal body part" RELATED []
xref: AEO:0000032
xref: BILA:0000032
xref: CARO:0000032
xref: EFO:0000808
xref: EHDAA2:0003032
xref: FBbt:00007009
xref: FMA:67504
xref: galen:BodyPart
xref: HAO:0000032
xref: MA:0002433
xref: MAT:0000293
xref: MIAA:0000293
xref: ncithesaurus:Body_Part
xref: OpenCyc:Mx4rvViAHJwpEbGdrcN5Y29ycA
xref: TAO:0001308
xref: XAO:0003013
xref: ZFA:0001308
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0000476
name: acellular anatomical structure
alt_id: UBERON:CARO_0000040-FBbt_00007013-FMA_63863-ZFA_0000382
def: "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." [CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: AEO:0000040
xref: BILA:0000040
xref: CARO:0000040
xref: EHDAA2:0003040
xref: FBbt:00007013
xref: FMA:63863
xref: HAO:0000040
xref: TAO:0000382
xref: XAO:0003162
xref: ZFA:0000382
is_a: UBERON:0000061 ! anatomical structure
disjoint_from: UBERON:0000480 ! anatomical group
[Term]
id: UBERON:0000477
name: anatomical cluster
alt_id: UBERON:CARO_0000041-FMA_49443-ZFA_0001478
def: "Anatomical group that has its parts adjacent to one another. // Anatomical structure, which has as its parts a heterogeneous collection of organs, organ parts, cells or body part subdivisions that are adjacent to, or continuous with one another; does not constitute an organ, organ system or organ system subdivision, or body part or body part subdivision. Examples: joint, adnexa of uterus, root of lung, renal pedicle, back. // Anatomical group that has its parts adjacent to one another." [CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: AEO:0000041
xref: BILA:0000041
xref: CARO:0000041
xref: EHDAA2:0003041
xref: FMA:49443
xref: HAO:0000041
xref: TAO:0001478
xref: XAO:0003160
xref: ZFA:0001478
is_a: UBERON:0000480 ! anatomical group
disjoint_from: UBERON:0000467 ! anatomical system
[Term]
id: UBERON:0000478
name: extraembryonic structure
alt_id: UBERON:CARO_0000042-FBbt_00005835-FMA_85537-MIAA_0000061-ZFA_0000020
def: "Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "extra-embryonic structure" EXACT []
synonym: "extraembryonic component" RELATED []
synonym: "extraembryonic tissue" RELATED []
xref: AEO:0000042
xref: BILA:0000042
xref: CARO:0000042
xref: EHDAA2:0000003
xref: FBbt:00005835
xref: FMA:85537
xref: HAO:0000042
xref: HOG:0000292
xref: ncithesaurus:Extraembryonic_Structure
xref: TAO:0000020
xref: ZFA:0000020
is_a: UBERON:0000061 ! implied link automatically realized ! anatomical structure
relationship: adjacent_to UBERON:0002050
relationship: existence_starts_and_ends_during UBERON:0000068
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: adjacent_to UBERON:0002050 ! embryonic structure
intersection_of: existence_starts_and_ends_during UBERON:0000068 ! embryo stage
disjoint_from: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000479
name: portion of tissue
alt_id: UBERON:CARO_0000043-FBbt_00007003-XAO_0003040-ZFA_0001477
def: "Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships. // Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships. // Anatomical structure that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships. // Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships." [CARO:0000043, CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "tissue" EXACT []
synonym: "tissue portion" EXACT []
xref: AAO:0000607
xref: BILA:0000043
xref: CARO:0000043
xref: EHDAA2:0003043
xref: FBbt:00007003
xref: FMA:9637
xref: HAO:0000043
xref: NIF_GrossAnatomy:birnlex_19
xref: TAO:0001477
xref: XAO:0003040
xref: ZFA:0001477
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000480
name: anatomical group
alt_id: UBERON:CARO_0000054-XAO_0003001-ZFA_0001512
def: "Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue. // Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue. // Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue." [CARO:0000054, CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: AEO:0000054
xref: BILA:0000054
xref: CARO:0000054
xref: EHDAA2:0003054
xref: HAO:0000054
xref: TAO:0001512
xref: XAO:0003001
xref: ZFA:0001512
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000481
name: multi-tissue structure
alt_id: UBERON:CARO_0000055-FBbt_00007010-XAO_0003037-ZFA_0001488
def: "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. // Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. // Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. // Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." [CARO:0000055, CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: AEO:0000055
xref: BILA:0000055
xref: CARO:0000055
xref: EHDAA2:0003055
xref: FBbt:00007010
xref: HAO:0000055
xref: TAO:0001488
xref: XAO:0003037
xref: ZFA:0001488
is_a: UBERON:0000061 ! anatomical structure
relationship: has_part UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0000482
name: basal lamina
alt_id: UBERON:CARO_0000065-FMA_62918-ZFA_0001485
def: "Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue. // Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue." [CARO:MAH, Wikipedia:Basal_lamina, ZFIN:curator]
comment: TODO - use GO.
subset: uberon_slim
synonym: "basal lamina of connective tissue" EXACT []
xref: AEO:0000065
xref: BILA:0000065
xref: CARO:0000065
xref: EHDAA2:0003065
xref: FMA:62918
xref: GO:0005605
xref: HAO:0000065
xref: ncithesaurus:Basal_Lamina
xref: NIF_Subcellular:sao1397492660
xref: TAO:0001485
xref: WBbt:0005756
xref: XAO:0003163
xref: ZFA:0001485
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: adjacent_to UBERON:0000483 ! epithelium
[Term]
id: UBERON:0000483
name: epithelium
alt_id: UBERON:CARO_0000066-FBbt_00007005-FMA_9639-XAO_0003045-ZFA_0001486
def: "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium[CARO]." [CARO:MAH, Wikipedia:Epithelium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "epithelial tissue" EXACT []
xref: AAO:0000144
xref: AEO:0000066
xref: BILA:0000066
xref: BTO:0000416
xref: CARO:0000066
xref: EHDAA:1545
xref: EHDAA:2126
xref: EHDAA:3792
xref: EHDAA:3800
xref: EHDAA:3806
xref: EHDAA:4168
xref: EHDAA:4174
xref: EHDAA:4182
xref: EHDAA:4188
xref: EHDAA:4196
xref: EHDAA:4696
xref: EHDAA:4702
xref: EHDAA:4710
xref: EHDAA:4722
xref: EHDAA:4724
xref: EHDAA:4730
xref: EHDAA:4743
xref: EHDAA:5003
xref: EHDAA:5007
xref: EHDAA:510
xref: EHDAA:5145
xref: EHDAA:5155
xref: EHDAA:5161
xref: EHDAA:5167
xref: EHDAA:5173
xref: EHDAA:5198
xref: EHDAA:5204
xref: EHDAA:6100
xref: EHDAA:6106
xref: EHDAA:6116
xref: EHDAA:6126
xref: EHDAA:6136
xref: EHDAA:6144
xref: EHDAA:6150
xref: EHDAA:6156
xref: EHDAA:6162
xref: EHDAA:6168
xref: EHDAA:6180
xref: EHDAA:6186
xref: EHDAA:6192
xref: EHDAA:6202
xref: EHDAA:6214
xref: EHDAA:6220
xref: EHDAA:6230
xref: EHDAA:6236
xref: EHDAA:6246
xref: EHDAA:6256
xref: EHDAA:6266
xref: EHDAA:6276
xref: EHDAA:6286
xref: EHDAA:6294
xref: EHDAA:6300
xref: EHDAA:6306
xref: EHDAA:6312
xref: EHDAA:6318
xref: EHDAA:6526
xref: EHDAA:6803
xref: EHDAA:6966
xref: EHDAA:7090
xref: EHDAA:7765
xref: EHDAA:7787
xref: EHDAA:7794
xref: EHDAA:7800
xref: EHDAA:7806
xref: EHDAA:7991
xref: EHDAA:7999
xref: EHDAA:8013
xref: EHDAA:8019
xref: EHDAA:8027
xref: EHDAA:8037
xref: EHDAA:8049
xref: EHDAA:8055
xref: EHDAA:8173
xref: EHDAA:8185
xref: EHDAA:8201
xref: EHDAA:8211
xref: EHDAA:8223
xref: EHDAA:9035
xref: EHDAA:9043
xref: EHDAA:9049
xref: EHDAA:9248
xref: EHDAA:9257
xref: EHDAA:9285
xref: EHDAA:931
xref: EHDAA2:0003066
xref: FBbt:00007005
xref: FMA:9639
xref: GAID:402
xref: HAO:0000066
xref: HOG:0000387
xref: ncithesaurus:Epithelium
xref: TAO:0001486
xref: XAO:0003045
xref: ZFA:0001486
is_a: UBERON:0000119 ! cell layer
[Term]
id: UBERON:0000484
name: simple cuboidal epithelium
alt_id: UBERON:CARO_0000067-FMA_45566-ZFA_0001497
def: "Unilaminar epithelium that consists of a single layer of cuboidal cells. // Unilaminar epithelium, which consists of a single layer of cuboidal cells. Examples: epithelium of proximal renal tubule, pigmented layer of retina, epithelium of lens. // Unilaminar epithelium that consists of a single layer of cuboidal cells." [CARO:MAH, Wikipedia:Simple_cuboidal_epithelium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "epithelium simplex cuboideum" EXACT []
xref: AEO:0000067
xref: BILA:0000067
xref: CARO:0000067
xref: EHDAA2:0003067
xref: FMA:45566
xref: HAO:0000067
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Gray1133.png/200px-Gray1133.png
xref: ncithesaurus:Simple_Cuboidal_Epithelium
xref: TAO:0001497
xref: ZFA:0001497
is_a: UBERON:0000490 ! unilaminar epithelium
[Term]
id: UBERON:0000485
name: simple columnar epithelium
alt_id: UBERON:CARO_0000068-FMA_45567-ZFA_0001496
def: "Unilaminar epithelium, which consists of a single layer of columnar cells. Examples: ciliated columnar epithelium, gastric epithelium, microvillus columnar epithelium." [CARO:MAH, Wikipedia:Simple_columnar_epithelium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "epithelium simplex columnare" EXACT []
synonym: "simple columnar epithelium" EXACT []
xref: CARO:0000068
xref: FMA:45567
xref: HAO:0000068
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray1059.png/200px-Gray1059.png
xref: ncithesaurus:Simple_Columnar_Epithelium
xref: TAO:0001496
xref: ZFA:0001496
is_a: UBERON:0000490 ! unilaminar epithelium
[Term]
id: UBERON:0000486
name: multilaminar epithelium
alt_id: UBERON:CARO_0000069-FMA_45562-ZFA_0001494
def: "Epithelium which consists of more than one layer of epithelial cells that may or may not be in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, ciliated stratified columnar epithelium." [CARO:MAH, Wikipedia:Stratified_epithelium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "stratified epithelium" EXACT []
xref: AEO:0000069
xref: BILA:0000069
xref: BTO:0002074
xref: CARO:0000069
xref: EHDAA2:0003069
xref: FMA:45562
xref: HAO:0000069
xref: ncithesaurus:Stratified_Epithelium
xref: TAO:0001494
xref: ZFA:0001494
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0000487
name: simple squamous epithelium
alt_id: UBERON:CARO_0000070-FMA_45565-ZFA_0001498
def: "Unilaminar epithelium that consists of a single layer of squamous cells. // Unilaminar epithelium which consists of a single layer of squamous cells. Examples: pulmonary alveolar epithelium, endothelium. // Unilaminar epithelium that consists of a single layer of squamous cells." [CARO:MAH, Wikipedia:Simple_squamous_epithelium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "epithelium simplex squamosum" EXACT []
xref: AEO:0000070
xref: BILA:0000070
xref: CARO:0000070
xref: EHDAA2:0003070
xref: FMA:45565
xref: HAO:0000070
xref: ncithesaurus:Simple_Squamous_Epithelium
xref: TAO:0001498
xref: ZFA:0001498
is_a: UBERON:0000490 ! unilaminar epithelium
[Term]
id: UBERON:0000488
name: atypical epithelium
alt_id: UBERON:CARO_0000071-FMA_61741-ZFA_0001493
def: "Epithelium that consists of epithelial cells not arranged in one ore more layers. // Epithelium the cells of which do not conform to the typical arrangement of unilaminar and multilaminar epithelium. Examples: olfactory epithelium; epithelium of ciliary body. // Epithelium that consists of epithelial cells not arranged in one or more layers." [CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "heterogenous epithelium" EXACT []
xref: AEO:0000071
xref: BILA:0000071
xref: CARO:0000071
xref: EHDAA2:0003071
xref: FMA:61741
xref: HAO:0000071
xref: TAO:0001493
xref: ZFA:0001493
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0000489
name: cavitated compound organ
alt_id: UBERON:CARO_0000072-ZFA_0001490
def: "Compound organ that contains one or more macroscopic anatomical spaces. // Compound organ that contains one or more macroscopic anatomical spaces." [CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: AEO:0000072
xref: BILA:0000072
xref: CARO:0000072
xref: EHDAA2:0003072
xref: HAO:0000072
xref: TAO:0001490
xref: XAO:0003165
xref: ZFA:0001490
is_a: UBERON:0003103 ! implied link automatically realized ! compound organ
relationship: has_part UBERON:0002553
intersection_of: UBERON:0003103 ! compound organ
intersection_of: has_part UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0000490
name: unilaminar epithelium
alt_id: UBERON:CARO_0000073-FMA_45561-ZFA_0001495
def: "Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium." [CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "simple epithelium" EXACT []
xref: AEO:0000073
xref: BILA:0000073
xref: CARO:0000073
xref: EHDAA2:0003073
xref: FMA:45561
xref: HAO:0000073
xref: ncithesaurus:Simple_Epithelium
xref: TAO:0001495
xref: ZFA:0001495
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0000491
name: solid compound organ
alt_id: UBERON:CARO_0000074-ZFA_0001491
def: "Compound organ that does not contain macroscopic anatomical spaces. // Compound organ that does not contain macroscopic anatomical spaces." [CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: AEO:0000074
xref: BILA:0000074
xref: CARO:0000074
xref: EHDAA2:0003074
xref: HAO:0000074
xref: TAO:0001491
xref: XAO:0003164
xref: ZFA:0001491
is_a: UBERON:0003103 ! compound organ
[Term]
id: UBERON:0000908
name: hippocampal commissure
alt_id: UBERON:Commissure-MA_0002723
def: "The lateral portions of the body of the fornix are joined by a thin triangular lamina, named the psalterium (lyra). This lamina contains some transverse fibers that connect the two hippocampi across the middle line and constitute the commissure of fornix (hippocampal commissure)." [Wikipedia:Hippocampal_commissure]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "commissure of fornix" RELATED [Wikipedia:Commissure_of_fornix]
xref: FMA:61970
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray747.png/200px-Gray747.png
xref: MA:0002723
xref: NIF_GrossAnatomy:birnlex_746
is_a: UBERON:0001020 ! commissure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: attached_to UBERON:0001954 ! hippocampus
relationship: part_of UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0000909
name: cerebellum lobule VI
alt_id: UBERON:Declive-MA_0001003
comment: This class was created automatically from a combination of ontologies
synonym: "declive" RELATED []
xref: MA:0001003
xref: NIF_GrossAnatomy:nlx_anat_20081229
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0000910
name: chyme
alt_id: UBERON:ENVO_02000026-FMA_62961
def: "Chyme is a bodily fluid consisting of a liquid substance found in the stomach before passing through the pyloric valve and entering the duodenum. It results from the mechanical and chemical breakdown of a bolus and consists of partially digested food, water, hydrochloric acid, and various digestive enzymes." [Wikipedia:Chyme]
synonym: "chymus" EXACT [ENVO:02000026]
xref: ENVO:02000026
xref: FMA:62961
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000911
name: chyle
alt_id: UBERON:ENVO_02000030-FMA_61403
def: "Chyle is a bodily fluid consisting of a milky fluid consisting of lymph and emulsified fats; formed in the small intestine during digestion of ingested fats." [http://wordnet.princeton.edu/perl/webwn?s=chyle, Wikipedia:Chyle]
xref: ENVO:02000030
xref: FMA:61403
xref: GAID:1187
is_a: UBERON:0000463 ! portion of organism substance
relationship: has_part UBERON:0002391 ! lymph
[Term]
id: UBERON:0000912
name: mucus
alt_id: UBERON:ENVO_02000040-FMA_66938
def: "Mucus is a bodily fluid consisting of a slippery secretion of the lining of the mucous membranes in the body. It is a viscous colloid containing antiseptic enzymes (such as lysozyme) and immunoglobulins. Mucus is produced by goblet cells in the mucous membranes that cover the surfaces of the membranes. It is made up of mucins and inorganic salts suspended in water." [Wikipedia:Mucus]
xref: ENVO:02000040
xref: FMA:66938
xref: GAID:1164
xref: galen:Mucus
xref: ncithesaurus:Mucus
xref: OpenCyc:Mx4rvVjHq5wpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000913
name: interstitial fluid
alt_id: UBERON:ENVO_02000042-FMA_9673
def: "Transudate which surrounds cells within a tissue. // Interstitial fluid is a bodily fluid consisting of a solution which bathes and surrounds the cells of multicellular animals. It is the main component of the extracellular fluid, which also includes plasma and transcellular fluid." [FMA:9673, Wikipedia:Interstitial_fluid]
synonym: "intercellular fluid" EXACT [ENVO:02000042]
synonym: "tissue fluid" EXACT [ENVO:02000042]
xref: ENVO:02000042
xref: FMA:9673
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000914
name: organismal segment
alt_id: UBERON:FBbt_00000003-FMA_11367-MIAA_0000271
def: "One of the repeated divisions of the whole organism." [FB:gg, Wikipedia:Segmentation_(biology)]
comment: TODO - organ segment vs segment vs segmental subdivision
subset: uberon_slim
xref: FBbt:00000003
xref: HAO:0000929
xref: MAT:0000271
xref: MIAA:0000271
xref: ncithesaurus:Segmental
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000915
name: thorax
alt_id: UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295
def: "Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "upper body" RELATED []
xref: BTO:0001368
xref: EFO:0000965
xref: FMA:9576
xref: GAID:91
xref: galen:Thorax
xref: MA:0000022
xref: MAT:0000295
xref: MIAA:0000295
xref: ncithesaurus:Thorax
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000916
name: abdomen
alt_id: UBERON:FBbt_00000020-FMA_9577-MA_0000029-MIAA_0000298
def: "In vertebrates such as mammals the abdomen (belly) constitutes the part of the body between the thorax (chest) and pelvis. The region enclosed by the abdomen is termed the abdominal cavity." [Wikipedia:Abdomen]
comment: Vertebrate specific. In arthropods 'abdomen' is the most distal section of the body which lies behind the thorax or cephalothorax. If need be we can introduce some grouping class
subset: uberon_slim
synonym: "adult abdomen" RELATED []
synonym: "belly" RELATED []
xref: BTO:0000020
xref: FMA:9577
xref: GAID:16
xref: galen:Abdomen
xref: MA:0000029
xref: MAT:0000298
xref: MIAA:0000298
xref: OpenCyc:Mx4rvVjgyZwpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000917
name: abdominal segment
alt_id: UBERON:FBbt_00000021-SPD_0000055
synonym: "segment of abdomen" EXACT [OBOL:automatic]
xref: FBbt:00000021
xref: HAO:0000016
xref: SPD:0000055
is_obsolete: true
[Term]
id: UBERON:0000918
name: yolk
alt_id: UBERON:FBbt_00000035-MIAA_0000335-XAO_0000281
def: "The nutritive substance contained in the egg." [FB:gg, Wikipedia:Yolk]
comment: TODO - check - embryonic structure vs cell component
subset: uberon_slim
synonym: "vegetal yolk mass" BROAD []
synonym: "yolk cell" RELATED []
xref: FBbt:00000035
xref: GO:0060417
xref: MAT:0000335
xref: MIAA:0000335
xref: TAO:0000084
xref: XAO:0000281
xref: ZFA:0000084
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000919
name: lipid droplet
alt_id: UBERON:FBbt_00000037-FMA_62962
xref: FBbt:00000037
xref: FMA:62962
xref: GO:0005811
is_obsolete: true
replaced_by: GO:0005811
[Term]
id: UBERON:0000920
name: egg chorion
alt_id: UBERON:FBbt_00000038-FMA_80224-ZFA_0000329
alt_id: UBERON:FMA_18674-MA_0001715
def: "A protective, noncellular membrane that surrounds the eggs of various animals including insects and fish [GO]." [FB:gg, GO:0042600, Wikipedia:Chorion_(egg)]
subset: uberon_slim
synonym: "chorion" RELATED []
synonym: "chorion (egg)" EXACT []
xref: EHDAA2:0000245
xref: FBbt:00000038
xref: FMA:80224
xref: TAO:0000329
xref: ZFA:0000329
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: surrounds UBERON:0003125 ! vitelline membrane
[Term]
id: UBERON:0000921
name: pronucleus
alt_id: UBERON:FBbt_00000048-FMA_84673
def: "." [Wikipedia:Pronucleus]
xref: FBbt:00000048
xref: FMA:84673
xref: GO:0045120
is_obsolete: true
replaced_by: GO:0045120
[Term]
id: UBERON:0000922
name: embryo
alt_id: UBERON:FBbt_00000052-FMA_69068-MIAA_0000019-XAO_0000113
def: "Anatomical entity that comprises the organism in the early stages of growth and differentiation that are characterized by cleavage, the laying down of fundamental tissues, and the formation of primitive organs and organ systems. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant." [BTO:0000379, FB:FBrf0039741, FB:FBrf0041814, GO:0009790, Wikipedia:Embryo]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "developmental tissue" EXACT []
xref: BTO:0000379
xref: EFO:0001367
xref: EHDAA:38
xref: EHDAA2:0000002
xref: EV:0300001
xref: FBbt:00000052
xref: FMA:69068
xref: GAID:963
xref: MAT:0000226
xref: MIAA:0000019
xref: ncithesaurus:Embryo
xref: OGEM:000001
xref: OGES:000000
xref: OGES:000022
xref: OpenCyc:Mx4rwP1ceZwpEbGdrcN5Y29ycA
xref: XAO:0000113
xref: XAO:1000012
xref: ZFA:0000103
is_a: UBERON:0000468 ! implied link automatically realized ! multi-cellular organism
relationship: existence_ends_with UBERON:0000068
relationship: existence_starts_with UBERON:0000068
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_ends_with UBERON:0000068 ! embryo stage
intersection_of: existence_starts_with UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0000923
name: germ layer
alt_id: UBERON:FBbt_00000110-FMA_69069
alt_id: UBERON:XAO_0003011-ZFA_0001122
def: "A layer of cells produced during the process of gastrulation during the early development of the animal embryo, which is distinct from other such layers of cells, as an early step of cell differentiation. The three types of germ layers are the endoderm, ectoderm, and mesoderm." [Wikipedia:Germ_layer]
subset: uberon_slim
synonym: "embryonic germ layer" RELATED []
synonym: "embryonic germ layers" RELATED []
synonym: "embryonic tissue" BROAD [FMA:69069]
synonym: "germinal layer" EXACT [ncithesaurus:Germinal_Layer]
synonym: "primary germ layer" EXACT [GO:0001704, ZFA:0001122]
xref: AAO:0000480
xref: BILA:0000035
xref: BTO:0000556
xref: FBbt:00000110
xref: FMA:69069
xref: GAID:1303
xref: HOG:0001223
xref: ncithesaurus:Embryonic_Tissue
xref: ncithesaurus:Germinal_Layer
xref: TAO:0001122
xref: XAO:0003011
xref: ZFA:0001122
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0001048 ! primordium
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: develops_from UBERON:0002532 ! epiblast
[Term]
id: UBERON:0000924
name: ectoderm
alt_id: UBERON:FBbt_00000111-FMA_69070-MIAA_0000173-XAO_0000001-ZFA_0000016
def: "The outermost germ layer of the embryo. // Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [FB:gg, OMD:ectoderm, Wikipedia:Ectoderm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "embryonic ectoderm" EXACT [HOG:0000153]
xref: AAO:0000137
xref: BILA:0000036
xref: BTO:0000315
xref: EFO:0000414
xref: EHDAA:1084
xref: EHDAA:1090
xref: EHDAA:132
xref: EHDAA:138
xref: EHDAA:1636
xref: EHDAA:1652
xref: EHDAA:1667
xref: EHDAA:1673
xref: EHDAA:1701
xref: EHDAA:2360
xref: EHDAA:538
xref: EHDAA:577
xref: EHDAA:585
xref: EHDAA:597
xref: EHDAA:609
xref: EHDAA:615
xref: EHDAA:621
xref: EHDAA2:0000428
xref: FBbt:00000111
xref: FMA:69070
xref: GAID:1304
xref: HOG:0000153
xref: MAT:0000155
xref: MAT:0000173
xref: MIAA:0000173
xref: ncithesaurus:Ectoderm
xref: TAO:0000016
xref: XAO:0000001
xref: ZFA:0000016
is_a: UBERON:0000923 ! germ layer
is_a: UBERON:0005085 ! implied link automatically realized ! ectodermal placode
[Term]
id: UBERON:0000925
name: endoderm
alt_id: UBERON:FBbt_00000125-FMA_69071-MIAA_0000175-XAO_0000090-ZFA_0000017
def: "The innermost germ layer of the embryo. // Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [FB:gg, OMD:endoderm, Wikipedia:Endoderm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "entoderm" RELATED []
xref: AAO:0000139
xref: BILA:0000038
xref: BTO:0000800
xref: EFO:0002545
xref: EHDAA:103
xref: EHDAA:1088
xref: EHDAA:1092
xref: EHDAA:1638
xref: EHDAA:1654
xref: EHDAA:166
xref: EHDAA:1671
xref: EHDAA:1675
xref: EHDAA:524
xref: EHDAA:530
xref: EHDAA:540
xref: EHDAA:581
xref: EHDAA:587
xref: EHDAA:599
xref: EHDAA:619
xref: EHDAA:623
xref: EHDAA2:0000436
xref: FBbt:00000125
xref: FMA:69071
xref: GAID:1305
xref: HOG:0000154
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray10.png/200px-Gray10.png
xref: MAT:0000175
xref: MIAA:0000175
xref: ncithesaurus:Endoderm
xref: TAO:0000017
xref: XAO:0000090
xref: ZFA:0000017
is_a: UBERON:0000923 ! germ layer
[Term]
id: UBERON:0000926
name: mesoderm
alt_id: UBERON:0003263
alt_id: UBERON:FBbt_00000126-FMA_69072-MIAA_0000174-XAO_0000050-ZFA_0000041
def: "The middle germ layer of the embryo, between the endoderm and ectoderm. // Primary germ layer that is the middle of the embryo's three germ layers." [FB:gg, OMD:mesoderm, Wikipedia:Mesoderm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "mesodermal mantle" RELATED []
xref: AAO:0000304
xref: BILA:0000037
xref: BTO:0000839
xref: EFO:0001981
xref: EHDAA:124
xref: EHDAA:140
xref: EHDAA:154
xref: EHDAA:160
xref: EHDAA:168
xref: EHDAA:183
xref: EHDAA2:0001128
xref: FBbt:00000126
xref: FMA:69072
xref: GAID:522
xref: HOG:0000152
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Mesoderm.png/200px-Mesoderm.png
xref: MAT:0000174
xref: MIAA:0000174
xref: ncithesaurus:Mesoderm
xref: TAO:0000041
xref: XAO:0000050
xref: ZFA:0000041
is_a: UBERON:0000923 ! germ layer
[Term]
id: UBERON:0000927
name: mesectoderm
alt_id: UBERON:FBbt_00000136-MIAA_0000243
def: "A double row of cells which are located at the midline from the end of gastrulations. The morphology of these cells is distinct from adjacent ectodermal cells - they are elongated such that one end remains exposed to the outside of the embryo at the mideline while the other end bissects the internalised mesoderm." [FB:FBrf0089570]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "MesEc" RELATED []
xref: FBbt:00000136
xref: MAT:0000243
xref: MIAA:0000243
is_a: UBERON:0000923 ! germ layer
relationship: adjacent_to UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0000928
name: embryonic segment
alt_id: UBERON:FBbt_00000154-MIAA_0000244
comment: This class was created automatically from a combination of ontologies
synonym: "segment - embryonic" EXACT []
xref: FBbt:00000154
xref: MAT:0000244
xref: MIAA:0000244
is_a: UBERON:0000914 ! organismal segment
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0000929
name: pharyngeal branch
alt_id: UBERON:FBbt_00000394-FMA_6234
def: "Motor nerve of the pharynx, arises from the upper part of the ganglion nodosum, and consists principally of filaments from the cranial portion of the accessory nerve." [Wikipedia:Pharyngeal_branch_of_vagus_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pharyngeal branch of inferior vagal ganglion" EXACT []
synonym: "pharyngeal branch of vagus" EXACT []
synonym: "pharyngeal branch of vagus nerve" EXACT []
synonym: "ramus pharyngealis nervi vagalis" EXACT []
synonym: "tenth cranial nerve pharyngeal branch" EXACT []
synonym: "vagal pharyngeal branch" EXACT []
synonym: "vagus nerve pharyngeal branch" EXACT []
xref: FMA:6234
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray791.png/200px-Gray791.png
is_a: UBERON:0001021 ! nerve
relationship: part_of UBERON:0001005 ! respiratory airway
relationship: part_of UBERON:0001759 ! vagus nerve
[Term]
id: UBERON:0000930
name: stomodeum
alt_id: UBERON:FBbt_00000439-ZFA_0001290
def: "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth[ZFA]. Depression between the brain and the pericardium in an embryo, and is the precursor of the mouth and the anterior lobe of the pituitary gland. The stomodeum is lined by ectoderm, and is separated from the anterior end of the fore-gut by the buccopharyngeal membrane. This membrane is devoid of mesoderm, being formed by the apposition of the stomodeal ectoderm with the fore-gut endoderm; at the end of the third week it disappears, and thus a communication is established between the mouth and the future pharynx[WP]. The anterior part of the embryonic digestive system deriving from the stomodeal invagination of the ectoderm[FBbt]." [Wikipedia:Stomodeum]
comment: TODO - check species-specificity
subset: uberon_slim
synonym: "mouth primordium" EXACT [XAO:0000269]
synonym: "stomatodeum" EXACT [Wikipedia:Stomodeum]
xref: EMAPA:16263
xref: FBbt:00000439
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray977.png/200px-Gray977.png
xref: ncithesaurus:Stomodeum
xref: XAO:0000269
xref: ZFA:0001290
is_a: UBERON:0000464 ! anatomical space
relationship: adjacent_to UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0000931
name: proctodeum
alt_id: UBERON:FBbt_00000440-WBbt_0006795
def: "Inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage[ZFA]. A proctodeum is the back ectodermal part of an alimentary canal. It is created during embryogenesis by a folding of the outer body wall[WP]." [Wikipedia:Proctodeum]
comment: removed WBbt:0006795 - junction between the alimentary and genital tracts in the male.
subset: uberon_slim
xref: FBbt:00000440
xref: HOG:0000139
xref: ncithesaurus:Proctodeum
xref: TAO:0000066
xref: XAO:0001019
xref: ZFA:0000066
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0003102 ! surface structure
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0001353 ! anal region
[Term]
id: UBERON:0000932
name: ventral longitudinal muscle
alt_id: UBERON:FBbt_00000482-WBbt_0005814
comment: TODO - check
xref: FBbt:00000482
xref: WBbt:0005814
is_obsolete: true
[Term]
id: UBERON:0000933
name: pharyngeal muscle
alt_id: UBERON:FBbt_00000487-FMA_46619-MA_0001797
def: "A muscle that forms part of the pharynx." [GO:0043282]
comment: TODO: this is probably an inappropriate grouping term. In drosophila this is a cell. In mammals an organ.
synonym: "muscle of pharynx" EXACT []
synonym: "muscle organ of pharynx" EXACT [OBOL:automatic]
synonym: "pharynx muscle" EXACT []
synonym: "pharynx muscle organ" EXACT [OBOL:automatic]
xref: BTO:0001048
xref: FBbt:00000487
xref: FMA:46619
xref: GAID:154
xref: MA:0001797
xref: ncithesaurus:Pharyngeal_Muscle
is_a: UBERON:0003831 ! implied link automatically realized ! respiratory system muscle
relationship: part_of UBERON:0001042
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001042 ! pharynx
relationship: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0000934
name: ventral nerve cord
alt_id: UBERON:FBbt_00001102-MIAA_0000339-WBbt_0005829
def: "The pair of closely united ventral longitudinal nerves with their segmental ganglia that is characteristic of many elongate invertebrates (as earthworms)[BTO]. A large process bundle that runs along the vental mid-line extending from the ventral region of the nerve ring[WB]. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms[GO]." [BTO:0002328, GO:0007419, WB:Paper00000938, Wikipedia:Ventral_nerve_cord]
comment: The ventral nerve cords make up the nervous system of some phyla of the invertebrates, particularly within the nematodes, annelids and the arthropods. It usually consists of cerebral ganglia anteriorly with the nerve cords running down the ventral ('belly', as opposed to back) plane of the organism. This characteristic is important in qualifying the difference compared to the chordates, which have a dorsal nerve cord. Ventral nerve cords from anterior to posterior (the thoracic and abdominal tagma in the arthropods) are made up of segmented ganglia that are connected by a tract of nerve fibers passing from one side to the other of the nerve cord called commissures. The complete system bears some likeness to a rope ladder. In some animals the bilateral ganglia are fused into a single large ganglion per segment. This characteristic is found mostly in the insects.
subset: uberon_slim
synonym: "ventral cord" EXACT [GO:0007419]
xref: BTO:0002328
xref: EFO:0000896
xref: FBbt:00001102
xref: MAT:0000339
xref: MIAA:0000339
xref: WBbt:0005829
is_a: UBERON:0005053 ! nerve cord
[Term]
id: UBERON:0000935
name: anterior commissure
alt_id: UBERON:FBbt_00001105-FMA_61961-MA_0002722-ZFA_0001108
def: "bundle of nerve fibers (white matter), connecting the two cerebral hemispheres across the midline, and placed in front of the columns of the fornix. The great majority of fibers connecting the two hemispheres travel through the corpus callosum, which is over 10 times larger than the anterior commissure, and other routes of communication pass through the hippocampal commissure or, indirectly, via subcortical connections. Nevertheless, the anterior commissure is a significant pathway that can be clearly distinguished in the brains of all mammals." [Wikipedia:Anterior_commissure]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "commissura anterior" RELATED []
synonym: "commissura rostral" RELATED []
synonym: "commissura rostralis" EXACT []
synonym: "precommisure" RELATED [Wikipedia:Anterior_commisure]
synonym: "rostral commissure" RELATED []
xref: BTO:0002169
xref: FMA:61961
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Gray744.png/200px-Gray744.png
xref: MA:0002722
xref: ncithesaurus:Anterior_Commissure
xref: TAO:0001108
xref: ZFA:0001108
is_a: UBERON:0002473 ! intercerebral commissure
[Term]
id: UBERON:0000936
name: posterior commissure
alt_id: UBERON:FBbt_00001120-FMA_62072-MA_0002743-ZFA_0000320
def: "Rounded band of white fibers crossing the middle line on the dorsal aspect of the upper end of the cerebral aqueduct. It is important in the bilateral pupillary light reflex. Its fibers acquire their medullary sheaths early, but their connections have not been definitely determined. Most of them have their origin in a nucleus, the nucleus of the posterior commissure (nucleus of Darkschewitsch), which lies in the central gray substance of the upper end of the cerebral aqueduct, in front of the nucleus of the oculomotor nerve. Some are probably derived from the posterior part of the thalamus and from the superior colliculus, whereas others are believed to be continued downward into the medial longitudinal fasciculus. The posterior commissure interconnects the pretectal nuclei, mediating the consensual pupillary light reflex[WP].Diencephalic tract which is located in the vicinity of the dorsal diencephalon and mesencephalon and connects the pretectal nuclei. From Neuroanatomy of the Zebrafish Brain[ZFA]." [Wikipedia:Posterior_commissure, ZFA:0000320]
comment: disjoint from FBbt:00001120
subset: uberon_slim
synonym: "caudal commissure" EXACT [FMA:62072, ZFA:0000320]
synonym: "epithalamic commissure" EXACT [FMA:62072]
xref: FMA:62072
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray715.png/200px-Gray715.png
xref: MA:0002743
xref: ncithesaurus:Posterior_Commissure
xref: NIF_GrossAnatomy:birnlex_1026
xref: TAO:0000320
xref: ZFA:0000320
is_a: UBERON:0001020 ! commissure
is_a: UBERON:0005970 ! implied link automatically realized ! brain commissure
relationship: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0000937
name: proneural cluster
alt_id: UBERON:FBbt_00001135-ZFA_0000068
synonym: "proneural clusters" RELATED [ZFA:0000068]
xref: FBbt:00001135
xref: ZFA:0000068
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0000939
name: imaginal disc
alt_id: UBERON:FBbt_00001761-MIAA_0000064
def: "A tissue in the larva which gives rise to the adult external cuticle." [FB:gg, Wikipedia:Imaginal_disc]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "imaginal disk" RELATED []
xref: FBbt:00001761
xref: MAT:0000064
xref: MIAA:0000064
is_a: UBERON:0000481 ! multi-tissue structure
[Term]
id: UBERON:0000941
name: cranial nerve II
alt_id: UBERON:FBbt_00001956-FMA_50863-MA_0001097-XAO_0000188-ZFA_0000435
def: "Cranial nerve which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. Transmits visual information from the retina to the brain." [ISBN:0471209627, Wikipedia:Optic_nerve, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CN-II" RELATED []
synonym: "optic" RELATED []
synonym: "optic II" EXACT [EHDAA2:0001313]
synonym: "optic II nerve" EXACT []
synonym: "optic nerve" BROAD SENSU [FMA:50863]
synonym: "optic nerve [II]" EXACT []
synonym: "second cranial nerve" EXACT []
xref: EHDAA:6788
xref: EHDAA2:0001313
xref: EHDAA2:0001314
xref: FMA:50863
xref: GAID:831
xref: HOG:0000543
xref: MA:0001097
xref: ncithesaurus:Optic_Nerve
xref: NIF_GrossAnatomy:birnlex_1640
xref: OpenCyc:Mx4rvVjLm5wpEbGdrcN5Y29ycA
xref: TAO:0000435
xref: XAO:0000188
xref: ZFA:0000435
is_a: UBERON:0001785 ! implied link automatically realized ! cranial nerve
is_a: UBERON:0003266 ! implied link automatically realized ! nerve of central nervous system
is_a: UBERON:0004904 ! implied link automatically realized ! optic nerve
relationship: continuous_with UBERON:0000959
relationship: continuous_with UBERON:0000966
intersection_of: UBERON:0001785 ! cranial nerve
intersection_of: continuous_with UBERON:0000959 ! optic chiasma
intersection_of: continuous_with UBERON:0000966 ! retina
relationship: part_of UBERON:0002104 ! visual system
relationship: part_of UBERON:0003098 ! optic stalk
[Term]
id: UBERON:0000942
name: frontal nerve
alt_id: UBERON:FBbt_00002630-FMA_52638
def: "The frontal nerve is the largest branch of the ophthalmic, and may be regarded, both from its size and direction, as the continuation of the nerve. It enters the orbit through the supraorbital foramen, and runs forward between the Levator palpebræ superioris and the periosteum. Midway between the apex and base of the orbit it divides into two branches, supratrochlear nerve and supraorbital nerve. [WP,unvetted]." [Wikipedia:Frontal_nerve]
comment: Exclude FBbt:00002630
subset: uberon_slim
xref: FMA:52638
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/45/Gray787.png/200px-Gray787.png
xref: ncithesaurus:Frontal_Nerve
is_a: UBERON:0001021 ! nerve
[Term]
id: UBERON:0000943
name: labial sensillum
alt_id: UBERON:FBbt_00002721-WBbt_0005107
xref: FBbt:00002721
xref: WBbt:0005107
is_obsolete: true
[Term]
id: UBERON:0000944
name: dorsal branch
alt_id: UBERON:FBbt_00003051-FMA_76733
synonym: "dorsal vein" EXACT []
xref: FBbt:00003051
xref: FMA:76733
is_obsolete: true
[Term]
id: UBERON:0000945
name: stomach
alt_id: UBERON:FBbt_00003138-FMA_7148-MA_0000353-MIAA_0000051-XAO_0000128
def: "Internal organ that is the dilated portion of the alimentary tract situated between the esophagus and the beginning of the duodenum. It produces gastric juices involved in the breakdown of food[XAO]. Organ with organ cavity which is continuous proximally with the esophagus and distally with the small intestine. Examples: There is only one stomach[FMA]." [FB:FBrf0007735, OMD:stomach, Wikipedia:Stomach]
comment: fly has adult midgut - TODO check. Zebrafish is functionally stomach-less, but may retain ontogenic footprint. TADS:0000172 adult stomach. add functionally defined class?
subset: uberon_slim
synonym: "anterior intestine" RELATED []
synonym: "mesenteron" RELATED []
synonym: "stomach" RELATED []
synonym: "ventriculus" RELATED []
xref: AAO:0000579
xref: BTO:0001307
xref: EFO:0000837
xref: EHDAA:2993
xref: EHDAA2:0001915
xref: FMA:7148
xref: GAID:293
xref: galen:Stomach
xref: HOG:0000408
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e0/Stomach_diagram.svg/200px-Stomach_diagram.svg.png
xref: MA:0000353
xref: MAT:0000051
xref: MIAA:0000051
xref: ncithesaurus:Stomach
xref: OpenCyc:Mx4rvVjlqpwpEbGdrcN5Y29ycA
xref: TAO:0002121
xref: XAO:0000128
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001041 ! foregut
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0000946
name: cardial valve
alt_id: UBERON:FBbt_00003140-FMA_7110-MA_0000086-ZFA_0005065
def: "Flap of tissue that prevents regurgitation of blood from the ventricles to the atria or from the pulmonary arteries or aorta to the ventricles." [Wikipedia:Cardiac_valve]
comment: Rector et al: One might be tempted to define “heart valve” equivalently to “valve in the heart”, and “valve” as a “structure which functions as a valve”. But this combination results in the “foramen ovale” being classified as a kind of “heart valve”, since it is undoubtedly located in the heart and functions as a valve
subset: uberon_slim
synonym: "cardiac valve" RELATED []
synonym: "heart valve" EXACT []
synonym: "heart valves" RELATED []
synonym: "stomodaeal valve" RELATED []
synonym: "valve of heart" EXACT []
xref: BTO:0000564
xref: FMA:7110
xref: GAID:176
xref: galen:HeartValve
xref: HOG:0000818
xref: MA:0000086
xref: ncithesaurus:Cardiac_Valve
xref: OpenCyc:Mx4rv8oyuJwpEbGdrcN5Y29ycA
xref: TAO:0005065
xref: ZFA:0005065
is_a: UBERON:0003978 ! valve
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0000947
name: aorta
alt_id: UBERON:FBbt_00003153-FMA_3734-MA_0000062-MA_0000476-MIAA_0000035-XAO_0003010-ZFA_0000014
def: "Artery carrying blood from the heart to all the organs and other structures of the body, bringing oxygenated blood to all parts of the body in the systemic circulation" [Wikipedia:Aorta]
comment: TODO: check dorsal aorta. All amniotes have a broadly similar arrangement to that of humans, albeit with a number of individual variations. In fish, however, there are two separate vessels referred to as aortas. The ventral aorta carries de-oxygenated blood from the heart to the gills; part of this vessel forms the ascending aorta in tetrapods (the remainder forms the pulmonary artery). A second, dorsal aorta carries oxygenated blood from the gills to the rest of the body, and is homologous with the descending aorta of tetrapods. The two aortas are connected by a number of vessels, one passing through each of the gills. Amphibians also retain the fifth connecting vessel, so that the aorta has two parallel arches[WP].
subset: uberon_slim
synonym: "adult aorta" EXACT []
synonym: "dorsal aorta" NARROW SENSU [Wikipedia:Aorta#In_other_animals, ZFA:0000014]
synonym: "trunk of aortic tree" EXACT []
synonym: "trunk of systemic arterial tree" EXACT []
xref: BTO:0000135
xref: EFO:0000265
xref: FMA:3734
xref: GAID:469
xref: galen:Aorta
xref: HOG:0001523
xref: MA:0000062
xref: MAT:0000035
xref: MIAA:0000035
xref: ncithesaurus:Aorta
xref: OpenCyc:Mx4rvVjvTpwpEbGdrcN5Y29ycA
xref: XAO:0003010
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0000948
name: heart
alt_id: UBERON:FBbt_00003154-FMA_7088-MA_0000072-MIAA_0000036-XAO_0000064-ZFA_0000114
def: "A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood[GO]. Primitive fish have a four-chambered heart; however, the chambers are arranged sequentially so that this primitive heart is quite unlike the four-chambered hearts of mammals and birds. The first chamber is the sinus venosus, which collects de-oxygenated blood, from the body, through the hepatic and cardinal veins. From here, blood flows into the atrium and then to the powerful muscular ventricle where the main pumping action takes place. The fourth and final chamber is the conus arteriosus which contains several valves and sends blood to the ventral aorta. The ventral aorta delivers blood to the gills where it is oxygenated and flows, through the dorsal aorta, into the rest of the body. (In tetrapods, the ventral aorta has divided in two; one half forms the ascending aorta, while the other forms the pulmonary artery. In the adult fish, the four chambers are not arranged in a straight row but, instead, form an S-shape with the latter two chambers lying above the former two. This relatively simpler pattern is found in cartilaginous fish and in the more primitive ray-finned fish. In teleosts, the conus arteriosus is very small and can more accurately be described as part of the aorta rather than of the heart proper. The conus arteriosus is not present in any amniotes which presumably having been absorbed into the ventricles over the course of evolution. Similarly, while the sinus venosus is present as a vestigial structure in some reptiles and birds, it is otherwise absorbed into the right atrium and is no longer distinguishable[WP]." [GO:0007507]
comment: heart is part of circ system but not cv system because there are hearts without vasculature (e.g. drosophila). todo - make subclasses of heart for dorsal vessel vs cardiovascular heart
subset: uberon_slim
xref: BILA:0000020
xref: BTO:0000562
xref: EFO:0000815
xref: EHDAA:420
xref: EHDAA2:0000738
xref: FBbt:00003154
xref: FMA:7088
xref: GAID:174
xref: galen:Heart
xref: HOG:0000276
xref: MA:0000072
xref: MAT:0000036
xref: MIAA:0000036
xref: ncithesaurus:Heart
xref: OpenCyc:Mx4rvVjvDpwpEbGdrcN5Y29ycA
xref: TAO:0000114
xref: XAO:0000064
xref: ZFA:0000114
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0000949
name: endocrine system
alt_id: UBERON:FBbt_00003214-FBbt_00005068-FMA_9668-MA_0000012-XAO_0000158-ZFA_0001158
def: "Anatomical system that consists of the glands and parts of glands that produce endocrine secretions and help to integrate and control bodily metabolic activity." [NLM:endocrine+system, Wikipedia:Endocrine_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "endocrine system" EXACT []
synonym: "exocrine system" BROAD []
synonym: "systema endocrinum" EXACT []
xref: FBbt:00005068
xref: FMA:9668
xref: GAID:439
xref: HOG:0000098
xref: MA:0000012
xref: ncithesaurus:Endocrine_System
xref: TAO:0001158
xref: XAO:0000158
xref: ZFA:0001158
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0000950
name: gracilis
alt_id: UBERON:FBbt_00003277-FMA_43882-MA_0002311
def: "The most superficial muscle on the medial side of the thigh. It is thin and flattened, broad above, narrow and tapering below. It arises by a thin aponeurosis from the anterior margins of the lower half of the symphysis pubis and the upper half of the pubic arch." [Wikipedia:Gracilis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gracilis muscle" EXACT [BTO:0000536]
xref: BTO:0000536
xref: FMA:43882
xref: galen:Gracilis
xref: MA:0002311
xref: ncithesaurus:Gracilis
xref: OpenCyc:Mx4rv7If8pwpEbGdrcN5Y29ycA
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0000951
name: rotator muscle
alt_id: UBERON:FBbt_00003314-FMA_23081
comment: This class was created automatically from a combination of ontologies
xref: FMA:23081
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0000952
name: adductor muscle
alt_id: UBERON:FBbt_00003317-FMA_74998
def: "Muscle that causes adduction can be called an adductor muscle. For example in biology, the muscle or muscles in the interior of a bivalve mollusk which serve to close the valves are called adductor muscles, and the large foot to shell muscle in gastropods such as the abalone and limpet is also known as an adductor muscle[WP]. A muscle that brings a body part closer to the sagittal plane of the body[ZFA, WikipediaLAdduction]." [Wikipedia:Adductor_muscle]
comment: TODO - add functional xp definition. TODO - check MA.
subset: functional_classification
subset: uberon_slim
synonym: "adductor" RELATED []
xref: BTO:0000030
xref: FBbt:00003317
xref: FMA:74998
xref: MA:0002267
xref: ZFA:0005268
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0000953
name: visceral muscle
alt_id: UBERON:FBbt_00003525-MIAA_0000303-XAO_0000175
def: "involuntary non-striated muscle." [Wikipedia:Smooth_muscle]
comment: terminological note: GO uses visceral and smooth interchangeably
synonym: "adult visceral muscle" RELATED []
synonym: "smooth muscle" EXACT []
is_obsolete: true
[Term]
id: UBERON:0000954
name: intestine muscle
alt_id: UBERON:FBbt_00003537-WBbt_0005796
def: "intestinal muscle cell, attach to intestine and body wall anterior to anus" [WB:Paper00000653]
subset: uberon_slim
synonym: "intestinal muscle" EXACT []
xref: BTO:0000643
xref: FBbt:00003537
xref: WBbt:0005796
is_obsolete: true
[Term]
id: UBERON:0000955
name: brain
alt_id: UBERON:FBbt_00003624-FBbt_00005095-FMA_50801-MA_0000168-MIAA_0000098-MIAA_0000341-WBbt_0005440-XAO_0000010-ZFA_0000008
def: "The brain is the center of the nervous system in all vertebrate, and most invertebrate, animals.[1] Some primitive animals such as jellyfish and starfish have a decentralized nervous system without a brain, while sponges lack any nervous system at all. In vertebrates, the brain is located in the head, protected by the skull and close to the primary sensory apparatus of vision, hearing, balance, taste, and smell[WP]." [Wikipedia:Brain]
comment: include synganglion?
subset: uberon_slim
synonym: "synganglion" RELATED []
xref: BILA:0000135
xref: BTO:0000142
xref: EFO:0000302
xref: EHDAA:2641
xref: EHDAA:6485
xref: EHDAA2:0000183
xref: FBbt:00005095
xref: FMA:50801
xref: GAID:571
xref: galen:Brain
xref: HOG:0000157
xref: MA:0000168
xref: MAT:0000098
xref: MIAA:0000098
xref: ncithesaurus:Brain
xref: NIF_GrossAnatomy:birnlex_796
xref: OpenCyc:Mx4rvVjT65wpEbGdrcN5Y29ycA
xref: TAO:0000008
xref: XAO:0000010
xref: ZFA:0000008
is_a: UBERON:0000489 ! cavitated compound organ
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: develops_from UBERON:0001049 ! neural tube
relationship: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0000956
name: cerebral cortex
alt_id: UBERON:FBbt_00003625-FMA_61830-MA_0000185-MIAA_0000108
def: "The cerebral cortex is a structure within the brain that plays a key role in memory, attention, perceptual awareness, thought, language, and consciousness. It constitutes the outermost layer of the cerebrum. In preserved brains, it has a grey color, hence the name 'grey matter'. Grey matter is formed by neurons and their unmyelinated fibers, whereas the white matter below the grey matter of the cortex is formed predominantly by myelinated axons interconnecting different regions of the central nervous system. The human cerebral cortex is 2–4 mm (0.08–0.16 inches) thick. The surface of the cerebral cortex is folded in large mammals, such that more than two-thirds of the cortical surface is buried in the grooves, called 'sulci. ' The phylogenetically most recent part of the cerebral cortex, the neocortex, also called isocortex, is differentiated into six horizontal layers; the more ancient part of the cerebral cortex, the hippocampus (also called archicortex), has at most three cellular layers, and is divided into subfields. Relative variations in thickness or cell type (among other parameters) allow us to distinguish between different neocortical architectonic fields. The geometry of at least some of these fields seems to be related to the anatomy of the cortical folds, and, for example, layers in the upper part of the cortical ridges seem to be more clearly differentiated than in its deeper parts. [WP,unvetted]." [Wikipedia:Cerebral_cortex]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cortex of cerebral hemisphere" EXACT []
xref: BTO:0000233
xref: EFO:0000328
xref: EHDAA:5464
xref: EHDAA2:0000234
xref: FMA:61830
xref: GAID:629
xref: HOG:0000722
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Cerebral_Cortex_location.jpg/200px-Cerebral_Cortex_location.jpg
xref: MA:0000185
xref: MAT:0000108
xref: MIAA:0000108
xref: ncithesaurus:Cortex
xref: NIF_GrossAnatomy:birnlex_1494
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0000957
name: lamina
alt_id: UBERON:FBbt_00003708-FMA_67265
def: "Any thin layer or plate. In the context of Drosophila refers to the first optic neuropil." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Lamina]
comment: TODO - merge with cell layer?
subset: uberon_slim
xref: FBbt:00003708
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0000958
name: medulla
alt_id: UBERON:FBbt_00003748-FMA_61108
def: "Middle part of an organ (as opposed to the cortex)[WP]." [Wikipedia:Medulla]
comment: This class is used in a very general sense
subset: uberon_slim
xref: FMA:61108
xref: galen:Medulla
is_a: UBERON:0000471 ! compound organ component
relationship: surrounded_by UBERON:0001851 ! cortex
[Term]
id: UBERON:0000959
name: optic chiasma
alt_id: UBERON:FBbt_00003921-FMA_62045-MA_0001098-ZFA_0000556
def: "Nerve trunk which is continuous with right and left optic nerves and right and left optic tracts. // Decussation of cranial nerve II axons whereby some cross the midline and some remain ipsilateral." [Wikipedia:Optic_chiasma, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "decussation of optic nerve fibers" EXACT []
synonym: "optic chiasm" EXACT []
xref: EHDAA:10227
xref: EHDAA2:0001302
xref: FMA:62045
xref: GAID:832
xref: HOG:0000190
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/1543%2CVisalius%27OpticChiasma.jpg/200px-1543%2CVisalius%27OpticChiasma.jpg
xref: MA:0001098
xref: NIF_GrossAnatomy:birnlex_1416
xref: TAO:0000556
xref: ZFA:0000556
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000941 ! cranial nerve II
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0000960
name: pharyngeal nerve
alt_id: UBERON:FBbt_00004021-FMA_77524-WBbt_0005441
def: "The pharyngeal nerve (pterygopalatine nerve) is a small branch arising from the posterior part of the pterygopalatine ganglion. It passes through the pharyngeal canal with the pharyngeal branch of the maxillary artery, and is distributed to the mucous membrane of the nasal part of the pharynx, behind the auditory tube. [WP,unvetted]." [Wikipedia:Pharyngeal_nerve]
subset: uberon_slim
xref: FBbt:00004021
xref: FMA:77524
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray780.png/200px-Gray780.png
xref: WBbt:0005441
is_obsolete: true
[Term]
id: UBERON:0000961
name: thoracic ganglion
alt_id: UBERON:FBbt_00004052-FMA_6471-MA_0001159
def: "The thoracic ganglia are paravertebral ganglia. The thoracic portion of the sympathetic trunk typically has 12 thoracic ganglia. Emerging from the ganglia are thoracic splancic nerves (the cardiopulmonary, the greater, lesser, and least splanchic nerves) that help provide sympathetic innervation to abdominal structures. Also, the ganglia of the thoracic sympathetic trunk have both white and gray rami communicantes. The white rami carry sympathetic fibers arising in the spinal cord into the sympathetic trunk. [WP,unvetted]." [Wikipedia:Thoracic_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ganglion of thorax" EXACT [OBOL:automatic]
synonym: "thoracic paravertebral ganglion" EXACT []
synonym: "thoracic splanchnic ganglion" EXACT []
synonym: "thoracic sympathetic ganglion" EXACT []
synonym: "thorax ganglion" EXACT [OBOL:automatic]
xref: BTO:0001831
xref: FMA:6471
xref: HOG:0000515
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray849.png/200px-Gray849.png
xref: MA:0001159
xref: ncithesaurus:Thoracic_Ganglion
is_a: UBERON:0001807 ! paravertebral ganglion
is_a: UBERON:0003339 ! implied link automatically realized ! ganglion of central nervous system
relationship: part_of UBERON:0000915
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0000915 ! thorax
relationship: part_of UBERON:0000915 ! thorax
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0000962
name: cervical nerve
alt_id: UBERON:FBbt_00004053-FMA_5859
def: "The cervical nerves are the spinal nerves from the cervical vertebrae. Although there are seven cervical vertebrae (C1-C7), there are eight cervical nerves (C1-C8). All nerves except C8 emerge above their corresponding vertebrae, while the C8 nerve emerges below the C7 vertebra. (In the other portions of the spine, the nerve emerges below the vertebra with the same name. ) Dorsal (posterior) distribution includes the greater occipital (C2) and third occipital (C3). Ventral (anterior) distribution includes the cervical plexus (C1-C4) and brachial plexus (C5-C8) [WP,unvetted]." [Wikipedia:Cervical_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cervical nerve tree" EXACT []
synonym: "cervical spinal nerve" EXACT []
xref: FMA:5859
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray795.png/200px-Gray795.png
xref: ncithesaurus:Cervical_Nerve
xref: NIF_GrossAnatomy:nlx_anat_20090207
is_a: UBERON:0001780 ! spinal nerve
is_a: UBERON:0003266 ! implied link automatically realized ! nerve of central nervous system
is_a: UBERON:0003824 ! implied link automatically realized ! thoracic segment nerve
relationship: part_of UBERON:0000961 ! thoracic ganglion
[Term]
id: UBERON:0000963
name: head sensillum
alt_id: UBERON:FBbt_00004114-MIAA_0000204
comment: This class was created automatically from a combination of ontologies
xref: FBbt:00004114
xref: MAT:0000204
xref: MIAA:0000204
is_a: UBERON:0002536 ! arthropod sensillum
[Term]
id: UBERON:0000964
name: cornea
alt_id: UBERON:FBbt_00004191-FMA_58238-MA_0000266-XAO_0000180-ZFA_0000640
def: "transparent front part of the eye that covers the iris, pupil, and anterior chamber. Together with the lens, the cornea refracts light, accounting for approximately two-thirds of the eye's total optical power." [Wikipedia:Cornea]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "tunica cornea" RELATED []
xref: BTO:0000286
xref: EFO:0000377
xref: EHDAA:10199
xref: EHDAA2:0000316
xref: FMA:58238
xref: GAID:892
xref: HOG:0000164
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0000266
xref: ncithesaurus:Cornea
xref: OpenCyc:Mx4rvViBa5wpEbGdrcN5Y29ycA
xref: TAO:0000640
xref: XAO:0000180
xref: ZFA:0000640
is_a: UBERON:0003102 ! surface structure
relationship: develops_from UBERON:0005427 ! corneal primordium
relationship: induced_by UBERON:0005426 ! lens vesicle
relationship: part_of UBERON:0000965 ! lens
[Term]
id: UBERON:0000965
name: lens
alt_id: UBERON:FBbt_00004199-FMA_58241-MA_0000275-MIAA_0000141-XAO_0000008-ZFA_0000035
def: "Transparent part of eye that helps to refract light to be focused on the retina." [Wikipedia:Lens_(anatomy)]
comment: This class excludes compound eye corneal lenses. The naming may be too vertebrate-centric, in which case it could be renamed to camera-eye
subset: uberon_slim
synonym: "camera-type eye lens" EXACT [GO:0002088]
synonym: "eye lens" EXACT []
xref: BTO:0000723
xref: EHDAA:9057
xref: EHDAA2:0000975
xref: FMA:58241
xref: HOG:0000169
xref: MA:0000275
xref: MAT:0000141
xref: MIAA:0000141
xref: ncithesaurus:Crystalline_Lens
xref: OpenCyc:Mx4rvVj0fZwpEbGdrcN5Y29ycA
xref: TAO:0000035
xref: XAO:0000008
xref: ZFA:0000035
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005389 ! transparent eye structure
relationship: develops_from UBERON:0003073 ! lens placode
relationship: induced_by UBERON:0003902 ! retinal neural layer
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
[Term]
id: UBERON:0000966
name: retina
alt_id: UBERON:FBbt_00004200-FMA_58301-MA_0000276-MIAA_0000142-XAO_0000009-ZFA_0000152
def: "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates. // Sensory membrane that lines the posterior chamber of the eye and functions as the immediate instrument of vision by receiving the image formed by the lens and converting it into chemical and nervous signals which reach the brain by way of the optic nerve. // The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995." [FB:ds, NLM:retina, Wikipedia:Retina, ZFIN:curator]
comment: Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Us the parent class photoreceptor array / light-sensitive tissue for arthropods
subset: uberon_slim
synonym: "inner layer of eyeball" EXACT []
synonym: "tunica interna of eyeball" EXACT []
xref: BTO:0001175
xref: EFO:0000832
xref: EHDAA:4757
xref: EHDAA2:0001627
xref: FMA:58301
xref: GAID:755
xref: HOG:0000229
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Human_eye_cross-sectional_view_grayscale.png/200px-Human_eye_cross-sectional_view_grayscale.png
xref: MA:0000276
xref: MAT:0000142
xref: MIAA:0000142
xref: ncithesaurus:Retina
xref: NIF_GrossAnatomy:birnlex_1153
xref: NIF_GrossAnatomy:birnlex_1156
xref: OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA
xref: TAO:0000152
xref: XAO:0000009
xref: ZFA:0000152
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
is_a: UBERON:0005388 ! photoreceptor array
relationship: develops_from UBERON:0003072 ! optic cup
relationship: part_of UBERON:0001802 ! posterior segment of eyeball
relationship: part_of UBERON:0005743 ! central nervous system plus retina
[Term]
id: UBERON:0000967
name: adult thoracic sensillum
alt_id: UBERON:FBbt_00004245-MIAA_0000205
def: "An arthropod sensillum that is part of a thorax [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "arthropod sensillum of thorax" EXACT [OBOL:automatic]
synonym: "sensillum of thorax" EXACT [OBOL:automatic]
synonym: "thoracic sensillum" EXACT []
synonym: "thorax arthropod sensillum" EXACT [OBOL:automatic]
synonym: "thorax sensillum" EXACT [OBOL:automatic]
xref: FBbt:00004245
xref: MAT:0000205
xref: MIAA:0000205
is_a: UBERON:0002536 ! arthropod sensillum
relationship: part_of UBERON:0000915
intersection_of: UBERON:0002536 ! arthropod sensillum
intersection_of: part_of UBERON:0000915 ! thorax
relationship: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0000968
name: adult abdominal sensillum
alt_id: UBERON:FBbt_00004461-MIAA_0000206
comment: This class was created automatically from a combination of ontologies
synonym: "abdomen arthropod sensillum" EXACT [OBOL:automatic]
synonym: "abdomen sensillum" EXACT [OBOL:automatic]
synonym: "abdominal sensillum" EXACT []
synonym: "arthropod sensillum of abdomen" EXACT [OBOL:automatic]
synonym: "sensillum of abdomen" EXACT [OBOL:automatic]
xref: FBbt:00004461
xref: MAT:0000206
xref: MIAA:0000206
is_a: UBERON:0002536 ! arthropod sensillum
[Term]
id: UBERON:0000969
name: joint connecting hardened body parts
alt_id: UBERON:FBbt_00004479-FMA_7493-MA_0001475
xref: HAO:0000982
xref: OpenCyc:Mx4rwP1TTZwpEbGdrcN5Y29ycA
is_a: UBERON:0004905 ! joint
[Term]
id: UBERON:0000970
name: eye
alt_id: UBERON:FBbt_00004508-FMA_54448-MA_0000261-MIAA_0000140-XAO_0000179-ZFA_0000107
def: "organ that detects light" [http://en.wikipedia.org/wiki/Eye, UBERON:cjm, Wikipedia:Eye]
subset: uberon_slim
synonym: "visual apparatus" RELATED []
xref: BILA:0000017
xref: BTO:0000439
xref: EFO:0000827
xref: GAID:69
xref: HOG:0000275
xref: MAT:0000140
xref: MIAA:0000140
xref: OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0002104 ! visual system
[Term]
id: UBERON:0000971
name: ommatidium
alt_id: UBERON:FBbt_00004510-MIAA_0000143
def: "One of the small facets of the compound eye." [ISBN:3110148986, Wikipedia:Ommatidium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "omatidium" EXACT []
xref: BTO:0001922
xref: FBbt:00004510
xref: HAO:0000666
xref: MAT:0000143
xref: MIAA:0000143
is_a: UBERON:0002536 ! arthropod sensillum
relationship: part_of UBERON:0000018 ! compound eye
[Term]
id: UBERON:0000972
name: antenna
alt_id: UBERON:FBbt_00004511-MIAA_0000086
def: "The paired, usually multiple jointed, sensory organs articulating on the procephalic region of the head capsule; its highly versatile sensory structures are capable to detect the various environmental stimuli. In the context of Drosophila refers to they are the most anterior segmented sensory appendage of the head." [FB:gg, ISBN:3110148986, Wikipedia:Antenna]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000074
xref: EFO:0000874
xref: FBbt:00004511
xref: HAO:0000101
xref: MAT:0000086
xref: MIAA:0000086
xref: OpenCyc:Mx4rvVjSAZwpEbGdrcN5Y29ycA
is_a: UBERON:0000026 ! appendage
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0000973
name: labrum
alt_id: UBERON:FBbt_00004522-FMA_76808
is_obsolete: true
[Term]
id: UBERON:0000974
name: neck
alt_id: UBERON:FBbt_00004550-FMA_7155-MA_0000024-MIAA_0000297
def: "Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck." [Wikipedia:Neck]
comment: TODO - generic definition
subset: uberon_slim
xref: AEO:0000108
xref: BTO:0000420
xref: EFO:0000967
xref: EHDAA2:0003108
xref: FBbt:00004550
xref: FMA:7155
xref: GAID:86
xref: galen:Neck
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Female_neck.jpg/200px-Female_neck.jpg
xref: MA:0000024
xref: MAT:0000297
xref: MIAA:0000297
xref: ncithesaurus:Neck
xref: OpenCyc:Mx4rvfoqZJwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rvVjLF5wpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000975
name: vertebrate sternum
alt_id: UBERON:FBbt_00004557-FMA_7485-MA_0001331
def: "Long flat bone shaped like a capital 'T' located in the center of the thorax (chest)." [ISBN:3110148986, Wikipedia:Sternum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sternum" EXACT []
xref: AAO:0000765
xref: BTO:0001302
xref: EHDAA:9561
xref: EHDAA2:0001914
xref: FMA:7485
xref: GAID:246
xref: galen:Sternum
xref: HOG:0000856
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/12/Illu_thoracic_cage.jpg/200px-Illu_thoracic_cage.jpg
xref: MA:0001331
xref: ncithesaurus:Sternum
xref: OpenCyc:Mx4rvVjO6JwpEbGdrcN5Y29ycA
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003827 ! implied link automatically realized ! thoracic segment bone
relationship: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0000976
name: humerus
alt_id: UBERON:FBbt_00004562-FMA_13303-MA_0001356
def: "Long bone which is part of the arm[FMA]. Paired, elongate, cylindrical bones of endochondral origin that extend from the pectoral girdle to the elbows[AAO]." [Wikipedia:Humerus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0000679
xref: EFO:0001398
xref: FMA:13303
xref: GAID:183
xref: galen:Humerus
xref: HOG:0001158
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Illu_upper_extremity.jpg/200px-Illu_upper_extremity.jpg
xref: MA:0001356
xref: ncithesaurus:Humerus
xref: XAO:0003210
is_a: UBERON:0002495 ! long bone
is_a: UBERON:0003607 ! implied link automatically realized ! forelimb long bone
relationship: part_of UBERON:0001440 ! skeleton of upper limb
[Term]
id: UBERON:0000977
name: pleura
alt_id: UBERON:FBbt_00004591-FMA_9583-MA_0000433
def: "The delicate serous membrane that lines each half of the thorax of mammals and is folded back over the surface of the lung of the same side[BTO]." [Wikipedia:Pleura]
comment: In mouse, is_a cavity lining. In FMA, is_a (viscous) serous membrane
subset: uberon_slim
synonym: "pleura" RELATED []
synonym: "wall of pleural sac" EXACT []
xref: BTO:0001791
xref: EFO:0001980
xref: FMA:9583
xref: GAID:360
xref: HOG:0000394
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Gray965.png/200px-Gray965.png
xref: MA:0000433
xref: ncithesaurus:Pleural_Tissue
xref: OpenCyc:Mx4rv3zwLZwpEbGdrcN5Y29ycA
is_a: UBERON:0004457 ! cavity lining
relationship: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0002402 ! pleural cavity
[Term]
id: UBERON:0000978
name: leg
alt_id: UBERON:FBbt_00004640-FMA_24979-MA_0000047-MIAA_0000095
def: "The portion of the hindlimb that contains both the stylopod and zeugopod." [Wikipedia:Leg#Limb]
comment: The term leg can mean: [1] an appendage on which an animal walks [2] the entire hindlimb of a tetrapod [3] the segment of a human leg between knee and ankle (cf FMA) [4] the region of a hindlimb include the stylopod and zeugopod, but excluding the autopod. We define this class as [4], and thus 'leg' is compltely analagous to 'arm'. For [1], see the class 'locomotive weight-bearing appendage'. For [2] we use 'hindlimb'. For [3] we use the less open to misinterpretation 'hindlimb zeugopod'.
subset: uberon_slim
synonym: "tetrapod leg" EXACT []
xref: BTO:0000721
xref: EFO:0001411
xref: EHDAA:5151
xref: EHDAA:6176
xref: EHDAA:8289
xref: EHDAA2:0000972
xref: GAID:49
xref: HAO:0000494
xref: HOG:0000345
xref: MA:0000047
xref: OpenCyc:Mx4rvViYzZwpEbGdrcN5Y29ycA
is_a: UBERON:0006058 ! multi-limb segment region
relationship: adjacent_to UBERON:0002387 ! foot
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0000979
name: tibia
alt_id: UBERON:FBbt_00004642-FMA_24476-MA_0001361
def: "Larger and stronger of the two bones in the leg below the knee in vertebrates and connects the knee with the ankle bones." [Wikipedia:Tibia]
comment: Does not include the tibia segment of the arthropod leg FBbt:00004642
subset: uberon_slim
synonym: "shankbone" EXACT [Wikipedia:Tibia]
synonym: "shinbone" EXACT [Wikipedia:Tibia]
xref: AAO:0000890
xref: BTO:0001252
xref: FMA:24476
xref: GAID:204
xref: galen:Tibia
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray260.png/200px-Gray260.png
xref: MA:0001361
xref: ncithesaurus:Tibia
xref: OpenCyc:Mx4rvtq3-ZwpEbGdrcN5Y29ycA
is_a: UBERON:0002495 ! long bone
is_a: UBERON:0003608 ! implied link automatically realized ! hindlimb long bone
relationship: part_of UBERON:0001441 ! skeleton of lower limb
[Term]
id: UBERON:0000980
name: trochanter
alt_id: UBERON:FBbt_00004643-FMA_82513
def: "part of the thigh bone." [Wikipedia:Trochanter]
comment: Excludes FBbt:00004643 HAO:0001034
subset: uberon_slim
xref: FMA:82513
xref: MA:0002821
xref: ncithesaurus:Trochanter
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0000981
name: femur
alt_id: UBERON:FBbt_00004644-FMA_9611-MA_0001359
def: "The femur, or thigh bone, is the most proximal (closest to the body) bone of the leg in vertebrates capable of walking or jumping, such as most land mammals, birds, many reptiles such as lizards, and amphibians such as frogs. In vertebrates with four legs, the femur is found only in the rear legs. Some species of whales[1], snakes[2], and other non-walking vertebrates have vestigial femurs. One of the earliest known vertebrates to have a femur is the Eusthenopteron, a prehistoric lobe-finned fish from the Late Devonian period." [Wikipedia:Femur]
comment: exlcudes FBbt:00004644. In invertebrates, the name femur is also given to the most proximal full-length jointed segment of the legs of some arthropods such as spiders. excludes HAO:0000327
subset: uberon_slim
synonym: "thigh bone" EXACT []
xref: AAO:0000889
xref: BTO:0001284
xref: EFO:0001396
xref: FMA:9611
xref: GAID:199
xref: galen:Femur
xref: HOG:0001159
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/73/Gray252.png/200px-Gray252.png
xref: MA:0001359
xref: ncithesaurus:Femur
xref: OpenCyc:Mx4rvVjOJJwpEbGdrcN5Y29ycA
xref: XAO:0003214
is_a: UBERON:0001272 ! implied link automatically realized ! hip bone
is_a: UBERON:0002495 ! long bone
is_a: UBERON:0003608 ! implied link automatically realized ! hindlimb long bone
is_a: UBERON:0003826 ! implied link automatically realized ! upper leg bone
relationship: part_of UBERON:0000376 ! hindlimb stylopod
relationship: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0000982
name: skeletal joint
alt_id: UBERON:FBbt_00004645-FMA_228659-FMA_7490-MA_0000319-MIAA_0000188-XAO_0000171-ZFA_0001596
def: "Heterogeneous cluster which consists of two or more adjacent bones or cartilages, parts of which are interconnected by organ parts that consist of various types of connective tissue. Together with other joints and bones, a joint constitutes the skeletal system. Examples: pubic symphysis, knee joint, temporomandibular joint. // The point of contact between elements of the skeleton. // Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue." [NLM:joint, Wikipedia:Joint, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "joint" BROAD [FMA:7490]
xref: AEO:0000182
xref: BTO:0001686
xref: EFO:0000948
xref: EHDAA2:0003182
xref: FMA:7490
xref: GAID:102
xref: galen:Joint
xref: HOG:0001276
xref: MA:0000319
xref: MAT:0000188
xref: MIAA:0000188
xref: ncithesaurus:Joint
xref: OpenCyc:Mx4rvVjjdpwpEbGdrcN5Y29ycA
xref: TAO:0000367
xref: XAO:0000171
xref: ZFA:0001596
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
is_a: UBERON:0004905 ! joint
relationship: part_of UBERON:0004770 ! articular system
[Term]
id: UBERON:0000983
name: metatarsus
alt_id: UBERON:FBbt_00004648-FMA_24997-MA_0000049
def: "Limb segment that consists of the long bones of the foot. The metatarsals are analogous to the metacarpal bones of the hand." [Wikipedia:Metatarsus]
comment: excludes FBbt:00004648
subset: uberon_slim
synonym: "metatarsal part of foot" EXACT []
synonym: "metatarsal region" EXACT []
xref: FMA:24997
xref: GAID:43
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png
xref: MA:0000049
xref: OpenCyc:Mx4rva_rBJwpEbGdrcN5Y29ycA
xref: XAO:0003212
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0000984
name: imaginal disc-derived wing
alt_id: UBERON:FBbt_00004729-MIAA_0000202
def: "A flight organ of the adult external thorax that is derived from a dorsal mesothoracic disc." [FB:gg]
comment: TODO: review. hymenoptera thorax = fusion of thorax and mesosoma/metasoma
subset: uberon_slim
synonym: "adult mesothoracic wing" RELATED []
synonym: "adult metathoracic wing" RELATED []
synonym: "thoracic wing" RELATED []
synonym: "thorax wing" RELATED [OBOL:automatic]
synonym: "wing" BROAD SENSU [FBbt:00004729]
synonym: "wing of thorax" RELATED [OBOL:automatic]
xref: FBbt:00004729
xref: HAO:0001089
is_a: UBERON:0000023 ! wing
relationship: develops_from UBERON:0000939
intersection_of: UBERON:0000023 ! wing
intersection_of: develops_from UBERON:0000939 ! imaginal disc
relationship: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0000985
name: axillary vein
alt_id: UBERON:FBbt_00004754-FMA_13329-MA_0002084
def: "In human anatomy, the axillary vein is a large blood vessel that conveys blood from the lateral aspect of the thorax, axilla (armpit) and upper limb toward the heart. There is one axillary vein on each side of the body. Its origin is at the lower margin of the teres major muscle and a continuation of the brachial vein. Its tributaries include the basilic vein and cephalic vein, which are both superficial veins. It terminates at the lateral margin of the first rib, at which it becomes the subclavian vein. It is accompanied along its course by a similarly named artery, the axillary artery. [WP,unvetted]." [Wikipedia:Axillary_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "subcostal vein" RELATED []
xref: FMA:13329
xref: GAID:527
xref: galen:AxillaryVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray576.png/200px-Gray576.png
xref: MA:0002084
xref: ncithesaurus:Axillary_Vein
xref: OpenCyc:Mx4rwLSHK5wpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003506 ! implied link automatically realized ! chest blood vessel
is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel
is_a: UBERON:0005194 ! implied link automatically realized ! thoracic vein
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0000987
name: haltere
alt_id: UBERON:FBbt_00004783-MIAA_0000203
def: "The capitate stalk on both sides of the thorax having developed from the dorsal metathoracic wing-buds, it is freely movable and capable of vibration, representing the hind wing of Diptera; used for flight balance." [FB:gg, ISBN:3110148986, Wikipedia:Haltere]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "balancer organ" RELATED []
xref: EFO:0000886
xref: FBbt:00004783
xref: MAT:0000203
xref: MIAA:0000203
xref: OpenCyc:Mx4rwL1JcJwpEbGdrcN5Y29ycA
is_a: UBERON:0000026 ! appendage
relationship: develops_from UBERON:0000939 ! imaginal disc
relationship: part_of UBERON:0000914 ! organismal segment
[Term]
id: UBERON:0000988
name: pons
alt_id: UBERON:FBbt_00004840-FMA_67943-MA_0000204-MIAA_0000115-ZFA_0001618
def: "Brainstrem structure that has as its parts the pontine tegmentum and basal part of pons. Examples: There is only one pons[FMA]." [FMA:67943, Wikipedia:Pons]
comment: pons absent from zebrafish. note this is of course not the same as FBbt:00004840
subset: uberon_slim
synonym: "pons of Varolius" EXACT []
xref: BTO:0001101
xref: EFO:0001394
xref: FMA:67943
xref: GAID:578
xref: HOG:0001176
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Gray768.png/200px-Gray768.png
xref: MA:0000204
xref: MAT:0000115
xref: MIAA:0000115
xref: NIF_GrossAnatomy:birnlex_733
is_a: UBERON:0002680 ! regional part of metencephalon
relationship: part_of UBERON:0001895 ! metencephalon
relationship: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0000989
name: penis
alt_id: UBERON:FBbt_00004852-FMA_9707-MA_0000408-MIAA_0000186
def: "The penis (plural penises, penes) is an external sexual organ of certain biologically male organisms, in both vertebrates and invertebrates. The penis is a reproductive organ, technically an intromittent organ, and for placental mammals, additionally serves as the external organ of urination. The penis is generally found on mammals and reptiles. [WP,unvetted]." [Wikipedia:Penis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "phallus" RELATED []
xref: BTO:0000405
xref: EFO:0000987
xref: EHDAA:9380
xref: EHDAA2:0001433
xref: FBbt:00004852
xref: FMA:9707
xref: GAID:389
xref: galen:Penis
xref: HOG:0000727
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Labelled_flaccid_penis.jpg/200px-Labelled_flaccid_penis.jpg
xref: MA:0000408
xref: MAT:0000186
xref: MIAA:0000186
xref: ncithesaurus:Penis
xref: OpenCyc:Mx4rvVjkCZwpEbGdrcN5Y29ycA
is_a: UBERON:0000062 ! organ
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: develops_from UBERON:0005876 ! genital tubercle
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0000990
name: reproductive system
alt_id: UBERON:FBbt_00004857-FMA_7160-MA_0000326-MIAA_0000305-WBbt_0005747-XAO_0000142-ZFA_0000632
def: "Anatomical system that has as its parts the organs concerned with reproduction." [Wikipedia:Reproductive_system]
comment: This class was created automatically from a combination of ontologies
subset: functional_classification
subset: uberon_slim
synonym: "genital system" RELATED []
xref: BILA:0000103
xref: BTO:0000081
xref: EFO:0000809
xref: EHDAA:5923
xref: EHDAA2:0001603
xref: FBbt:00004826
xref: FBbt:00004857
xref: FMA:7160
xref: GAID:363
xref: HAO:0000374
xref: HAO:0000895
xref: HOG:0000182
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Penis.svg/200px-Penis.svg.png
xref: MA:0000326
xref: MIAA:0000305
xref: ncithesaurus:Reproductive_System
xref: OpenCyc:Mx4rvVja4ZwpEbGdrcN5Y29ycA
xref: TAO:0000632
xref: WBbt:0005747
xref: XAO:0000142
xref: ZFA:0000632
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0000991
name: gonad
alt_id: UBERON:FBbt_00004858-FMA_18250-MA_0002420-WBbt_0005175-XAO_0003146-ZFA_0000413
def: "organ that makes gametes [Wikipedia]. The organs of the reproductive system in which the germ cells reside. // General anatomical term which refers to ovary or testis. // organ producing either sperm or ova. // Reproductive organ that produces and releases eggs (ovary) or sperm (testis). // The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis)." [FB:gg, ISBN:0140512888, Wikipedia:Gonad, ZFA:0000413, ZFIN:curator]
comment: FMA xref is a 'general anatomical term'
subset: uberon_slim
synonym: "gonada" EXACT []
xref: AAO:0000213
xref: BILA:0000123
xref: BTO:0000534
xref: FBbt:00004858
xref: FMA:18250
xref: GAID:368
xref: HAO:0000379
xref: HOG:0000397
xref: MA:0002420
xref: ncithesaurus:Gonad
xref: OpenCyc:Mx4rwQvdiZwpEbGdrcN5Y29ycA
xref: TAO:0000413
xref: WBbt:0005175
xref: XAO:0003146
xref: ZFA:0000413
is_a: UBERON:0003133 ! reproductive organ
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0002323 ! body cavity
[Term]
id: UBERON:0000992
name: ovary
alt_id: UBERON:FBbt_00004865-FMA_7209-MA_0000384-MIAA_0000125-XAO_0000258-ZFA_0000403
def: "Ovum-producing female reproductive organ." [Wikipedia:Ovary]
comment: Ovaries of some kind are found in the female reproductive system of many animals that employ sexual reproduction, including invertebrates. However, they develop in a very different way in most invertebrates than they do in vertebrates, and are not truly homologous. Many of the features found in human ovaries are common to all vertebrates, including the presence of follicular cells, tunica albuginea, and so on. However, many species produce a far greater number of eggs during their lifetime than do humans, so that, in fish and amphibians, there may be hundreds, or even millions of fertile eggs present in the ovary at any given time. In these species, fresh eggs may be developing from the germinal epithelium throughout life. Corpora lutea are found only in mammals, and in some elasmobranch fish; in other species, the remnants of the follicle are quickly resorbed by the ovary. In birds, reptiles, and monotremes, the egg is relatively large, filling the follicle, and distorting the shape of the ovary at maturity. Amphibians and reptiles have no ovarian medulla; the central part of the ovary is a hollow, lymph-filled space. The ovary of teleosts is also often hollow, but in this case, the eggs are shed into the cavity, which opens into the oviduct. Although most normal female vertebrates have two ovaries, this is not the case in all species. In birds and platypuses, the right ovary never matures, so that only the left is functional. In some elasmobranchs, the reverse is true, with only the right ovary fully developing. In the primitive jawless fish, and some teleosts, there is only one ovary, formed by the fusion of the paired organs in the embryo[WP].
subset: uberon_slim
synonym: "female organism genitalia gonad" EXACT [OBOL:automatic]
synonym: "female organism genitalia gonada" EXACT [OBOL:automatic]
synonym: "female organism reproductive system gonad" EXACT [OBOL:automatic]
synonym: "female organism reproductive system gonada" EXACT [OBOL:automatic]
synonym: "female reproductive system gonad" EXACT [OBOL:automatic]
synonym: "female reproductive system gonada" EXACT [OBOL:automatic]
synonym: "genitalia of female organism gonad" EXACT [OBOL:automatic]
synonym: "genitalia of female organism gonada" EXACT [OBOL:automatic]
synonym: "gonad of female organism genitalia" EXACT [OBOL:automatic]
synonym: "gonad of female organism reproductive system" EXACT [OBOL:automatic]
synonym: "gonad of female reproductive system" EXACT [OBOL:automatic]
synonym: "gonad of genitalia of female organism" EXACT [OBOL:automatic]
synonym: "gonad of reproductive system of female organism" EXACT [OBOL:automatic]
synonym: "gonada of female organism genitalia" EXACT [OBOL:automatic]
synonym: "gonada of female organism reproductive system" EXACT [OBOL:automatic]
synonym: "gonada of female reproductive system" EXACT [OBOL:automatic]
synonym: "gonada of genitalia of female organism" EXACT [OBOL:automatic]
synonym: "gonada of reproductive system of female organism" EXACT [OBOL:automatic]
synonym: "ovaries" RELATED PLURAL []
synonym: "ovum-producing ovary" EXACT SENSU [GO:0061039]
synonym: "reproductive system of female organism gonad" EXACT [OBOL:automatic]
synonym: "reproductive system of female organism gonada" EXACT [OBOL:automatic]
xref: AAO:0000371
xref: BILA:0000125
xref: BTO:0000975
xref: EHDAA:8124
xref: EHDAA2:0001360
xref: FBbt:00004865
xref: FMA:7209
xref: GAID:367
xref: HOG:0000251
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png
xref: MA:0000384
xref: MIAA:0000125
xref: ncithesaurus:Ovary
xref: OpenCyc:Mx4rvVi9QJwpEbGdrcN5Y29ycA
xref: TAO:0000403
xref: XAO:0000258
xref: ZFA:0000403
is_a: UBERON:0000991 ! implied link automatically realized ! gonad
is_a: UBERON:0003134 ! implied link automatically realized ! female reproductive organ
relationship: part_of UBERON:0000474
intersection_of: UBERON:0000991 ! gonad
intersection_of: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0000993
name: oviduct
alt_id: UBERON:FBbt_00004911-FMA_18245-MA_0000385-MIAA_0000126-XAO_0003052-ZFA_0000560
def: "passage from the ovaries to the outside of the body[Wikipedia:Oviduct]." [Wikipedia:Oviduct]
comment: note that the more specific class fallopian tube is included, which has mammal-specific relationships
subset: uberon_slim
xref: BTO:0000980
xref: EFO:0000974
xref: FBbt:00004911
xref: GAID:366
xref: HOG:0001136
xref: MAT:0000126
xref: MIAA:0000126
xref: ncithesaurus:Fallopian_Tube
xref: TAO:0000560
xref: XAO:0003052
xref: ZFA:0000560
is_a: UBERON:0000058 ! duct
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: connects UBERON:0000992 ! ovary
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0000994
name: spermathecum
alt_id: UBERON:FBbt_00004921-MIAA_0000168-WBbt_0005319
def: "an organ of the female reproductive tract in insects, some molluscs, oligochaeta worms and certain other invertebrates and vertebrates.[1] Its purpose is to receive and store sperm from the male, and can sometimes be the site of fertilization when the oocytes are ready.[2] Some species have multiple spermathecae, as seen in earthworms, where four pairs of spermathecae are present. One pair in 6,7,8 and 9 segments. They receive and store the spermatozoa of another earthworm during copulation.[3] They are lined with epithelium and are variable in shape; some are thin, heavily coiled tubes, others are vague outpocketings from the main reproductive tract. It is one of the many variations in sexual reproduction[WP]. an accordion-like tube that contains sperm and is the site of oocyte fertilization." [Wikipedia:Spermatheca]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "seminal receptacle" RELATED []
synonym: "spermatheca" RELATED PLURAL []
xref: BTO:0001273
xref: EFO:0000977
xref: FBbt:00004921
xref: HAO:0000945
xref: MAT:0000168
xref: MIAA:0000168
xref: WBbt:0005319
is_a: UBERON:0000062 ! organ
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0000991 ! gonad
[Term]
id: UBERON:0000995
name: uterus
alt_id: UBERON:FBbt_00004924-FMA_17558-MA_0000389-MIAA_0000127-WBbt_0006760
def: "An organ in which the eggs are developed and protected until laid." [ISBN:0198611862, Wikipedia:Uterus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "uterine horn" RELATED []
synonym: "uterine horns" RELATED []
xref: BTO:0001424
xref: EFO:0000975
xref: FBbt:00004924
xref: FMA:17558
xref: GAID:172
xref: galen:Uterus
xref: HOG:0001137
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png
xref: MA:0000389
xref: MAT:0000127
xref: MIAA:0000127
xref: ncithesaurus:Uterus
xref: OpenCyc:Mx4rvViojJwpEbGdrcN5Y29ycA
xref: WBbt:0006760
is_a: UBERON:0000062 ! organ
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: develops_from UBERON:0005795 ! embryonic uterus
relationship: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0000991 ! gonad
[Term]
id: UBERON:0000996
name: vagina
alt_id: UBERON:FBbt_00004925-FMA_19949-MA_0000394-MIAA_0000128
def: "a fibromuscular tubular tract leading from the uterus to the exterior of the body in female placental mammals and marsupials, or to the cloaca in female birds, monotremes, and some reptiles[WP]. Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina. Examples: There is only one vagina.[FMA]" [FMA:19949, Wikipedia:Vagina]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000243
xref: EFO:0000976
xref: FMA:19949
xref: GAID:381
xref: galen:Vagina
xref: HOG:0001138
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Vaginal_opening_-_english_description.jpg/200px-Vaginal_opening_-_english_description.jpg
xref: MA:0000394
xref: MAT:0000128
xref: MIAA:0000128
xref: ncithesaurus:Vagina
xref: OpenCyc:Mx4rvVj1B5wpEbGdrcN5Y29ycA
is_a: UBERON:0000062 ! organ
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0000997
name: vulva
alt_id: UBERON:FBbt_00004926-FMA_20462-FMA_225311-MA_0000395-MIAA_0000169-WBbt_0006748
def: "." [Wikipedia:Vulva]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "female pudendum" EXACT []
synonym: "puboperineal region" EXACT []
synonym: "skin of female pudendum" EXACT []
synonym: "skin of vulva" EXACT []
xref: BTO:0001055
xref: EFO:0000978
xref: FMA:20462
xref: GAID:383
xref: galen:Vulva
xref: HOG:0001458
xref: MA:0000395
xref: MAT:0000169
xref: MIAA:0000169
xref: ncithesaurus:Vulva
xref: OpenCyc:Mx4rvgAWeJwpEbGdrcN5Y29ycA
xref: WBbt:0006748
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0000998
name: seminal vesicle
alt_id: UBERON:FBbt_00004958-FMA_19386-MA_0000410-MIAA_0000171-WBbt_0006870
def: "Either of a pair of glandular pouches that lie one on either side of the male reproductive tract and in the human male secrete a sugar- and protein-containing fluid into the ejaculatory duct." [BTO:0001234, Wikipedia:Seminal_vesicle]
comment: The mesonephros persists and form the permanent kidneys in fishes and amphibians, but in reptiles, birds, and mammals, it atrophies and for the most part disappears rapidly as the permanent kidney (metanephros) begins to develop during the sixth or seventh week. By the beginning of the fifth month only the ducts and a few of the tubules of the mesonephros remain.
subset: uberon_slim
synonym: "gon_male_sves" RELATED []
synonym: "seminal gland" EXACT []
synonym: "vas efferens" RELATED []
xref: BTO:0001234
xref: EFO:0000986
xref: FMA:19386
xref: GAID:394
xref: HOG:0001379
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d1/Male_anatomy_en.svg/200px-Male_anatomy_en.svg.png
xref: MA:0000410
xref: MAT:0000171
xref: MIAA:0000171
xref: ncithesaurus:Seminal_Vesicle
xref: OpenCyc:Mx4rwTtRpJwpEbGdrcN5Y29ycA
is_a: UBERON:0002530 ! gland
is_a: UBERON:0005399 ! implied link automatically realized ! male reproductive gland
relationship: develops_from UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0000999
name: ejaculatory duct
alt_id: UBERON:FBbt_00004965-FMA_19325-MIAA_0000170
def: "The Ejaculatory ducts (ductus ejaculatorii) are paired structures in male anatomy, about 2 cm in length. Each ejaculatory duct is formed by the union of the vas deferens with the duct of the seminal vesicle. They pass through the prostate, and empty into the urethra at the Colliculus seminalis. During ejaculation, semen passes through the ducts and exits the body via the penis. Surgery to correct Benign Prostatic Hyperplasia (BPH) may destroy these ducts resulting in retrograde ejaculation. [WP,unvetted]." [Wikipedia:Ejaculatory_duct]
comment: TODO: split off insect classes
subset: uberon_slim
xref: BTO:0001580
xref: EFO:0000985
xref: FBbt:00004965
xref: FMA:19325
xref: GAID:388
xref: HAO:0000283
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png
xref: MAT:0000170
xref: MIAA:0000170
xref: ncithesaurus:Ejaculatory_Duct
xref: OpenCyc:Mx4rwOt7MJwpEbGdrcN5Y29ycA
xref: TADS:0000489
is_a: UBERON:0000058 ! duct
is_a: UBERON:0005904 ! implied link automatically realized ! duct of male reproductive system
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0001000
name: vas deferens
alt_id: UBERON:FBbt_00004968-FMA_19234-MA_0000413-MIAA_0000129-WBbt_0005337
def: "duct that transports sperm. In mammals this is from the epididymis." [Wikipedia:Vas_deferens]
comment: TODO: split off insect classes
subset: uberon_slim
synonym: "deferent duct" EXACT []
synonym: "ductus deferens" EXACT [Wikipedia:Vas_deferens]
synonym: "sperm duct" EXACT []
synonym: "vas deferen" EXACT []
synonym: "vasa deferentia" RELATED []
xref: BTO:0001427
xref: EFO:0000981
xref: FBbt:00004968
xref: FMA:19234
xref: GAID:404
xref: galen:VasDeferens
xref: HAO:0001052
xref: HOG:0001135
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d1/Male_anatomy_en.svg/200px-Male_anatomy_en.svg.png
xref: MA:0000413
xref: MIAA:0000129
xref: ncithesaurus:Vas_Deferens
xref: OpenCyc:Mx4rvjv7bpwpEbGdrcN5Y29ycA
xref: WBbt:0005337
xref: ZFA:0001268
is_a: UBERON:0000058 ! duct
is_a: UBERON:0005904 ! implied link automatically realized ! duct of male reproductive system
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0001001
name: chitin-based cuticle
alt_id: UBERON:FBbt_00004970
def: "The outer non-living layer of the integumentary system derived from the epidermis[FBbt]. The main structural component of arthropod cuticle is a polysaccharide, chitin, composed of N-acetylglucosamine units, together with proteins and lipids[WP]." [FB:gg, UBERON:cjm]
comment: TODO - split from exoskeleton?
subset: uberon_slim
synonym: "arthropod cuticle" RELATED []
synonym: "cuticle" NARROW [FBbt:00004970]
synonym: "exoskeleton" EXACT []
synonym: "insect cuticle" RELATED []
xref: EFO:0000944
xref: FBbt:00004970
xref: HAO:0000240
xref: OpenCyc:Mx4rvVkBTJwpEbGdrcN5Y29ycA
is_a: UBERON:0001002 ! cuticle
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0001003 ! epidermis
relationship: part_of UBERON:0002416 ! integumental system
[Term]
id: UBERON:0001002
name: cuticle
alt_id: UBERON:FBbt_00004970-MIAA_0000150-WBbt_0005755
def: "tough but flexible, non-mineral outer coverings of an organism, or parts of an organism, that provide protection. Cuticles are non-homologous, differing in their origin, structure and chemical composition[WP]." [Wikipedia:Cuticle]
comment: TODO - check cuticle vs exoskeleton. Note that GO has a very generic definition of cuticle
subset: uberon_slim
xref: BTO:0001600
xref: MA:0002704
xref: MAT:0000150
xref: MIAA:0000150
is_a: UBERON:0000476 ! acellular anatomical structure
[Term]
id: UBERON:0001003
name: epidermis
alt_id: UBERON:FBbt_00004993-FBbt_00005401-FMA_70596-MA_0000153-MIAA_0000154-WBbt_0005733-XAO_0000028-ZFA_0000105
def: "Outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species[GO]. A cellular, multilayered epithelium derived from the ectoderm[ZFA]." [BTO:0000404, GO:0008544, Wikipedia:Epidermis, ZFIN:curator]
comment: Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. Epidermis, in invertebrates, the outermost layers of skin of up to 30 layers of stratified squamous epithelium.
subset: uberon_slim
synonym: "adult epidermis" EXACT []
synonym: "hypoderm" RELATED []
synonym: "hypodermis" RELATED []
synonym: "skin" BROAD []
xref: AAO:0000143
xref: BTO:0000404
xref: EFO:0000954
xref: EHDAA2:0001844
xref: FBbt:00004993
xref: FMA:70596
xref: GAID:932
xref: HAO:0000298
xref: HOG:0000077
xref: MA:0000153
xref: MAT:0000154
xref: MIAA:0000154
xref: ncithesaurus:Epidermis
xref: TAO:0000105
xref: WBbt:0005733
xref: XAO:0000028
xref: ZFA:0000105
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: surrounds UBERON:0000468
intersection_of: UBERON:0000483 ! epithelium
intersection_of: surrounds UBERON:0000468 ! multi-cellular organism
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0002097 ! skin of body
relationship: part_of UBERON:0002199 ! integument
relationship: surrounds UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0001004
name: respiratory system
alt_id: UBERON:FBbt_00005024-FMA_7158-MA_0000327-MIAA_0000030-XAO_0000117-ZFA_0000272
def: "Functional system which consists of structures involved in respiration. // Anatomical system that has as its parts the organs involved in breathing in respiration (breathing)." [FB:FBrf0064787, OMD:respiratory+apparatus, Wikipedia:Respiratory_system]
comment: This class was created automatically from a combination of ontologies
subset: functional_classification
subset: uberon_slim
synonym: "apparatus respiratorius" EXACT []
synonym: "respiratory system" EXACT []
xref: AAO:0000541
xref: BTO:0000203
xref: EFO:0000804
xref: EHDAA:2203
xref: EHDAA2:0001604
xref: FMA:7158
xref: GAID:78
xref: HOG:0000202
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Respiratory_system_complete_en.svg/200px-Respiratory_system_complete_en.svg.png
xref: MA:0000327
xref: MAT:0000030
xref: MIAA:0000030
xref: ncithesaurus:Respiratory_System
xref: OpenCyc:Mx4rvVjzFJwpEbGdrcN5Y29ycA
xref: TAO:0000272
xref: XAO:0000117
xref: ZFA:0000272
is_a: UBERON:0000467 ! implied link automatically realized ! anatomical system
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0001005
name: respiratory airway
alt_id: UBERON:FBbt_00005043-FMA_7394-MA_0000441-MIAA_0000137-XAO_0000118
def: "An airway through which respiratory air passes in organisms." [Wikipedia:Trachea]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0001006
name: spiracle
alt_id: UBERON:FBbt_00005054-MIAA_0000208
def: "The mostly slit-like opening on the body surface through which air is taken into the respiratory system." [ISBN:3110148986, Wikipedia:Spiracle]
comment: This class was created automatically from a combination of ontologies. In elasmobranchs (sharks and rays), a spiracle is found behind each eye, and is often used to pump water through the gills while the animal is at rest (Fouts, 2003). A spiracle is also found in primitive bony fishes as the chirrups. TODO - check GO:0035277-spiracle morphogenesis, open tracheal system - taxon constraint in GO
subset: grouping_class
subset: uberon_slim
synonym: "open tracheal system spiracle" NARROW [GO:0035277]
synonym: "spiracle of open tracheal system" NARROW [GO:0035277]
synonym: "spiracular gland" RELATED []
xref: EFO:0000936
xref: FBbt:00005054
xref: HAO:0000950
xref: MAT:0000208
xref: MIAA:0000208
xref: TGMA:0000578
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0001007
name: digestive system
alt_id: UBERON:FBbt_00005055-FMA_7152-MA_0000323-MIAA_0000018-WBbt_0005748-XAO_0000125-ZFA_0000339
def: "The organ system involved in the absorption of nutrients. // Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes." [FB:gg, NLM:alimentary+system, Wikipedia:Digestive_system]
comment: note that many anatomy ontologies consider this synonymous with digestive system. here we follow MA in dividing digestive system into gastrointestinal and hepatobiliary. hepatobiliary includes the liver and biliary tract. species-specific AO classes are categorized according to whether liver is included. For example, XAO includes live as part of XAO:0000125 alimentary system, so we assume this class is the more generic class
subset: uberon_slim
synonym: "alimentary system" RELATED []
synonym: "alimentary tract" RELATED []
synonym: "gastrointestinal system" RELATED []
synonym: "gut" RELATED []
xref: AAO:0000129
xref: BILA:0000082
xref: EFO:0000793
xref: FBbt:00005055
xref: FMA:7152
xref: GAID:278
xref: GAID:294
xref: galen:DigestiveSystem
xref: MA:0002431
xref: MAT:0000018
xref: MIAA:0000018
xref: TADS:0000170
xref: TAO:0000339
xref: WBbt:0005748
xref: XAO:0000125
xref: ZFA:0000339
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0001008
name: urinary system
alt_id: UBERON:FBbt_00005056-FMA_7159-MIAA_0000027-WBbt_0005736-XAO_0000143-ZFA_0000163
def: "Anatomical system that has as its parts the organs concerned with the production and excretion of urine." [Wikipedia:Excretory_system]
comment: In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page)
subset: uberon_slim
synonym: "excretory system" EXACT []
synonym: "renal or urinary system" RELATED [EHDAA:5901]
synonym: "renal system" EXACT []
synonym: "renal/urinary system" RELATED []
synonym: "systema urinaria" EXACT []
synonym: "urinary system" RELATED []
synonym: "urinary tract" RELATED []
xref: BILA:0000015
xref: BTO:0003092
xref: EFO:0000803
xref: EHDAA2:0001601
xref: EMAPA:17366
xref: FBbt:00005056
xref: FMA:7159
xref: GAID:391
xref: HOG:0000723
xref: MA:0000325
xref: MAT:0000027
xref: MIAA:0000027
xref: ncithesaurus:Urinary_System
xref: TAO:0000163
xref: WBbt:0005736
xref: XAO:0000143
xref: ZFA:0000163
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0001009
name: circulatory system
alt_id: UBERON:FBbt_00005057-FMA_7161-MA_0000010-MIAA_0000016-XAO_0000100-ZFA_0000010
def: "organ system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells, etc. to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis[WP]." [Wikipedia:Circulatory_system]
comment: the cardiovascular system and the lymphatic system are parts of the circulatory system
subset: uberon_slim
xref: FBbt:00005057
xref: HOG:0001248
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png
xref: OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: has_part UBERON:0000948 ! heart
[Term]
id: UBERON:0001011
name: hemolymph
alt_id: UBERON:FBbt_00005061-MIAA_0000054
def: "Blood analogue used by all arthropods and most mollusks that have an open circulatory system. In these animals there is no distinction between blood and interstitial fluid. The liquid fills all of the interior (the hemocoel) of the body and surrounds all cells." [Wikipedia:Hemolymph]
subset: uberon_slim
synonym: "haemolymph" RELATED []
xref: BTO:0000572
xref: FBbt:00005061
xref: GAID:1220
xref: MAT:0000054
xref: MIAA:0000054
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0001013
name: adipose tissue
alt_id: UBERON:FBbt_00005065-FMA_20110-MA_0000009-MIAA_0000015-XAO_0003049
def: "Dense irregular connective tissue, which predominantly consists of adipocytes. // Connective tissue in which fat is stored." [NLM:adipose+tissue, Wikipedia:Adipose_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fat tissue" EXACT []
synonym: "fatty tissue" EXACT []
xref: AAO:0000001
xref: AEO:000020
xref: BTO:0001487
xref: EFO:0000234
xref: EFO:0000790
xref: EHDAA2:0003120
xref: FMA:20110
xref: GAID:920
xref: galen:FattyTissue
xref: HOG:0001284
xref: MA:0000009
xref: MAT:0000015
xref: MIAA:0000015
xref: ncithesaurus:Adipose_Tissue
xref: OpenCyc:Mx4rvVjc_ZwpEbGdrcN5Y29ycA
xref: XAO:0003049
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0001014
name: fat body
alt_id: UBERON:FBbt_00005066-FMA_58616-MA_0002481-MIAA_0000096-XAO_0003050
def: "the encapsulated adipose tissue." [MP:0005334]
synonym: "fat pad" EXACT []
is_obsolete: true
consider: UBERON:0003917
[Term]
id: UBERON:0001015
name: musculature
alt_id: UBERON:FBbt_00005069-FMA_30316-FMA_32558-MA_0000015-MIAA_0000025-WBbt_0005737-XAO_0000172-ZFA_0000548-ZFA_0005145
def: "Anatomical system that allows the animal move, includes all muscles[WP]." [BTO:0000887, WB:rynl, Wikipedia:Muscular_system, ZFIN:curator]
comment: In FMA this is classified as a set of organs. ZFA musculature system has subtypes, so it is classified here. WBbt muscular system has subtypes so it goes here. Note that we use the MA term set of skeletal muscles here as it seems most appropriate (not MA:musculature)
subset: uberon_slim
synonym: "muscle group" EXACT []
synonym: "muscles" RELATED []
synonym: "muscles set" EXACT []
synonym: "musculature" EXACT []
synonym: "musculature system" RELATED []
synonym: "set of muscles" EXACT [FMA:32558]
synonym: "set of organs" EXACT []
xref: BTO:0000887
xref: EFO:0001949
xref: FMA:32558
xref: MA:0000165
xref: ncithesaurus:Muscle
xref: OpenCyc:Mx4rvVjmr5wpEbGdrcN5Y29ycA
xref: TAO:0000548
xref: WBbt:0005737
xref: ZFA:0000548
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0001016
name: nervous system
alt_id: UBERON:FBbt_00005093-FMA_7157-MA_0000016-MIAA_0000026-WBbt_0005735-XAO_0000177-ZFA_0000396
def: "a network of specialized cells that communicate information about an organism's surroundings and itself[Wikipedia]." [ISBN:0-14-051288-8, ISBN:3110148986, NLM:nervous+system, WB:rynl, Wikipedia:Nervous_system, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nerve net" NARROW [Wikipedia:Nerve_net]
xref: AAO:0000324
xref: BILA:0000079
xref: BTO:0001484
xref: EFO:0000802
xref: EHDAA:826
xref: EHDAA2:0001246
xref: FBbt:00005093
xref: FMA:7157
xref: GAID:466
xref: HOG:0000402
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Nervous_system_diagram.png/200px-Nervous_system_diagram.png
xref: MA:0000016
xref: MAT:0000026
xref: MIAA:0000026
xref: ncithesaurus:Nervous_System
xref: NIF_GrossAnatomy:birnlex_844
xref: OpenCyc:Mx4rvViT_pwpEbGdrcN5Y29ycA
xref: TAO:0000396
xref: WBbt:0005735
xref: XAO:0000177
xref: ZFA:0000396
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: develops_from UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0001017
name: central nervous system
alt_id: UBERON:FBbt_00005094-FMA_55675-MA_0000167-XAO_0000215-ZFA_0000012
def: "The part of the nervous system which in vertebrates consists of the brain and spinal cord, to which sensory impulses are transmitted and from which motor impulses pass out, and which supervises and coordinates the activity of the entire nervous system[XAO]. Neuraxis plus retina[INCF]." [FB:gg, ISBN:3110148986, NLM:central+nervous+system, Wikipedia:Central_nervous_system, ZFIN:curator]
comment: ZFA retina NOT part_of CNS. XAO excludes retina in text def, retina part_of CNS. MA retina NOT part_of CNS. NIF_GA retina NOT part_of CNS. Fly also excludes it. EFO also excludes it. GO also excludes it.
subset: uberon_slim
synonym: "cerebrospinal axis" EXACT [FMA:55675]
synonym: "CNS" EXACT []
synonym: "neuraxis" EXACT [FMA:55675]
xref: AAO:0000090
xref: BILA:0000080
xref: BTO:0000227
xref: EFO:0000908
xref: EHDAA:828
xref: EHDAA2:0000225
xref: FBbt:00005094
xref: FMA:55675
xref: GAID:570
xref: HOG:0000293
xref: MA:0000167
xref: MAT:0000457
xref: ncithesaurus:Central_Nervous_System
xref: NIF_GrossAnatomy:birnlex_1099
xref: OpenCyc:Mx4rvzYt3pwpEbGdrcN5Y29ycA
xref: TAO:0000012
xref: XAO:0000215
xref: ZFA:0000012
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system
relationship: part_of UBERON:0005743 ! central nervous system plus retina
[Term]
id: UBERON:0001018
name: axon tract
alt_id: UBERON:FBbt_00005100-FMA_76739
def: "A group of axons linking two or more neuropils and having a common origin, termination[FBbt]." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html]
comment: TODO - check FMA is general anatomical term. TODO - invert specific?
synonym: "tract" EXACT []
xref: FBbt:00005100
xref: FMA:76739
xref: OpenCyc:Mx4ryTtpIYuaEduDlwACs6hPlA
is_a: UBERON:0000122 ! neuron projection bundle
[Term]
id: UBERON:0001019
name: fascicle
alt_id: UBERON:FBbt_00005101-FMA_76740
def: "A slender bundle of axons linking one neuropil to another[FBbt]." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Fascicle]
comment: TODO - invert specific?
subset: uberon_slim
synonym: "fasciculus" EXACT []
synonym: "nerve fasciculus" EXACT [FMA:12235]
xref: FBbt:00005101
xref: FMA:12235
xref: ncithesaurus:Fascicle
xref: NIF_GrossAnatomy:birnlex_872
is_a: UBERON:0000122 ! neuron projection bundle
[Term]
id: UBERON:0001020
name: commissure
alt_id: UBERON:FBbt_00005103-FMA_76741
def: "White matter fiber bundle that crosses the midline of the brain or spinal cord[NIF]. The transverse connection between two longitudinal parts, e.g. nerves, tracheae. In the context of Drosophila refers to a broad band of axons connecting the same neuropils each side of the brain[FBbt]." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, ISBN:3110148986, Wikipedia:Commissure]
comment: *not* the same as FMA:76741 Commissure
subset: uberon_slim
xref: FBbt:00005103
xref: FMA:83906
xref: ncithesaurus:Commissure
xref: NIF_GrossAnatomy:nlx_anat_20090513
xref: OpenCyc:Mx4rdBrmE6gOEdudWQACs5b6Bw
xref: TADS:0000201
is_a: UBERON:0001018 ! axon tract
[Term]
id: UBERON:0001021
name: nerve
alt_id: UBERON:FBbt_00005099-FMA_5914
alt_id: UBERON:FBbt_00005105-FMA_65132-MA_0000217-XAO_0003047-ZFA_0007009
def: "an enclosed, cable-like bundle of peripheral axons [wikipedia]. A portion of tissue which is a fasiculated group of axons[ZFA]." [Wikipedia:Nerve, ZFA:0007009, ZFIN:curator]
comment: TODO - nerve fiber. TODO - nerve in FMA, neural tree organ vs nerve. See also UBERON:0003714 portion of nerve tissue - ZFA refers to this?
subset: uberon_slim
synonym: "nerve fiber" RELATED []
synonym: "neural subtree" RELATED []
synonym: "neurofibrum" RELATED []
xref: BTO:0000925
xref: EHDAA:2851
xref: EHDAA:3776
xref: EHDAA:4657
xref: FBbt:00005105
xref: FMA:65132
xref: GAID:758
xref: galen:Nerve
xref: MA:0000217
xref: ncithesaurus:Nerve
xref: OpenCyc:Mx4rwP3lkpwpEbGdrcN5Y29ycA
xref: TAO:0007009
xref: XAO:0003047
xref: ZFA:0007009
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001022
name: cell body
alt_id: UBERON:FBbt_00005107-FMA_67301
def: "The cell body of a neuron. // Cell component which consists of the plasma membrane and the cytoplasm surrounding the nucleus." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Cell_body]
comment: TODO - use GO
subset: uberon_slim
synonym: "cell soma" EXACT []
synonym: "soma" RELATED []
xref: FBbt:00005107
xref: FMA:67301
xref: GO:0043025
xref: NIF_Subcellular:sao1044911821
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0001023
name: dendrite
alt_id: UBERON:FBbt_00005110-FMA_67314
def: "The region of a neuron receiving inputs from other neurons, typically a slender neurite, often branched. In insect neurons, this is often not a clear designation and often presynaptic sites co-extend with postsynaptic ones. // Cell appendage of a neuron that consists of the dendrite proper and the dendritic spines." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Dendrite]
comment: TODO - use GO
subset: uberon_slim
xref: FBbt:00005110
xref: FMA:67314
xref: GAID:749
xref: GO:0030425
xref: ncithesaurus:Dendrite
xref: NIF_Subcellular:sao1211023249
xref: OpenCyc:Mx4rviIdspwpEbGdrcN5Y29ycA
is_a: UBERON:0001024 ! neurite
[Term]
id: UBERON:0001024
name: neurite
alt_id: UBERON:FBbt_00005113-FMA_61814
def: "One of the processes or extensions of a neuron, axon or dendrite or cell body fiber. // Cell appendage of the neuron which includes the axon and the dendrite." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Neurite]
comment: TODO - use GO
subset: uberon_slim
xref: FBbt:00005113
xref: FMA:61814
xref: GAID:751
xref: GO:0043005
xref: NIF_Subcellular:sao-867568886
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0001025
name: synapse
alt_id: UBERON:FBbt_00005114-FMA_67408
def: "The structural contact that is the site of transmission between neurons, identified by a presynaptic ribbon and synaptic vesicles as the input element and one or (usually) more postsynaptic elements with various specializations (membrane densities, cisternae, etc.)." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Synapse]
comment: TODO - use GO
subset: uberon_slim
synonym: "synaptic junction" EXACT []
xref: FBbt:00005114
xref: FMA:67408
xref: GAID:766
xref: GO:0045202
xref: ncithesaurus:Synapse
xref: NIF_Subcellular:sao914572699
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0001026
name: motor nerve
alt_id: UBERON:FBbt_00005135-FMA_5867
def: "General anatomical term applied to nerves in which somatic efferent nerve fibers predominate[FMA]. A motor nerve is an efferent nerve that exclusively contains the axons of somatic and branchial motoneurons, which innervate skeletal muscles (that ensure locomotion) and branchial muscles (that motorize the face and neck)[WP]." [Wikipedia:Motor_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "efferent nerve" RELATED []
synonym: "nervus motorius" EXACT []
xref: FBbt:00005135
xref: FMA:5867
xref: OpenCyc:Mx4rwBexo5wpEbGdrcN5Y29ycA
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0003266 ! implied link automatically realized ! nerve of central nervous system
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0001027
name: sensory nerve
alt_id: UBERON:FBbt_00005136-FMA_5868
def: "General anatomical term applied to nerves in which somatic afferent nerve fibers predominate[FMA]. nerves that receive sensory stimuli made up of nerve fibers, called sensory fibers (mechanoreceptor fibers sense body movement and pressure placed against the body, and nociceptor fibers sense tissue injury)[WP]." [Wikipedia:Sensory_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "afferent nerve" RELATED []
synonym: "nervus sensorius" EXACT []
xref: FBbt:00005136
xref: FMA:5868
xref: OpenCyc:Mx4rv0GdXpwpEbGdrcN5Y29ycA
is_a: UBERON:0001021 ! nerve
[Term]
id: UBERON:0001029
name: neuromuscular junction
alt_id: UBERON:FBbt_00005142-FMA_61803
def: "." [Wikipedia:Neuromuscular_junction]
comment: TODO - use GO
subset: uberon_slim
synonym: "myoneural junction" EXACT []
xref: FBbt:00005142
xref: FMA:61803
xref: GAID:809
xref: GO:0031594
xref: NIF_Subcellular:sao1124888485
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001030
name: synaptic ribbon
alt_id: UBERON:FBbt_00005143-FMA_67107
comment: TODO - use GO
synonym: "ribbon synapse" EXACT []
xref: FBbt:00005143
xref: FMA:67107
xref: NIF_Subcellular:sao1884931180
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0001025 ! synapse
relationship: part_of UBERON:0001029 ! neuromuscular junction
[Term]
id: UBERON:0001031
name: neurilemma
alt_id: UBERON:FBbt_00005151-FMA_62976
def: "Neural tissue which consists of Schwann cells." [Wikipedia:Neurilemma]
comment: TODO
subset: uberon_slim
synonym: "neurolemma" EXACT []
synonym: "sheath of Schwann" EXACT []
xref: BTO:0003048
xref: FBbt:00005151
xref: FMA:62976
xref: GAID:730
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Gray631.png/200px-Gray631.png
xref: ncithesaurus:Sheath_of_Schwann
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001032
name: sensory system
alt_id: UBERON:FBbt_00005155-FMA_78499-MA_0002442-MIAA_0000031-WBbt_0005832-ZFA_0000282
def: "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information." [Wikipedia:Sensory_system]
comment: note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs
subset: uberon_slim
synonym: "sensory organ system" EXACT []
synonym: "sensory subsystem" EXACT []
xref: AAO:0000555
xref: BILA:0000099
xref: EFO:0000805
xref: FBbt:00005827
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png
xref: MA:0002442
xref: MAT:0000031
xref: MIAA:0000031
xref: NIF_GrossAnatomy:nlx_anat_090816
xref: TAO:0000282
xref: XAO:0003194
xref: ZFA:0000282
is_a: UBERON:0000467 ! anatomical system
relationship: overlaps UBERON:0001016 ! nervous system
relationship: part_of UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0001033
name: gustatory system
alt_id: UBERON:FBbt_00005159-FMA_7194-MA_0002446-MIAA_0000275-ZFA_0001101
def: "A subset of the sensory system for the sensing of taste." [Wikipedia:Gustatory_system]
comment: in ZFA and MA this is a subtype of sensory system. we should change sensory system to disambiguate parts and wholes
subset: uberon_slim
synonym: "gustatory organ system" EXACT []
synonym: "taste system" EXACT []
xref: BILA:0000143
xref: EFO:0000830
xref: FMA:7194
xref: MA:0002446
xref: MAT:0000275
xref: MIAA:0000275
xref: NIF_GrossAnatomy:nlx_anat_090803
xref: TAO:0001101
xref: XAO:0003197
xref: ZFA:0001101
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0001034
name: photoreceptor
alt_id: UBERON:FBbt_00005162-FMA_85613
def: "Can refer to a light sensitive organ, a photoreceptor cell or a photoreceptor protein. This class was made obsolete because it was ambiguous" [Wikipedia:Photoreceptor]
xref: BTO:0001060
xref: FBbt:00005162
xref: FMA:85613
xref: GAID:778
is_obsolete: true
consider: CL:0000210
[Term]
id: UBERON:0001035
name: socket
alt_id: UBERON:FBbt_00005172-FMA_7495-MA_0001499
def: "Fibrous joint in which the periodontal ligament connects a tooth to the alveolar bone of the maxilla or mandible. Examples: Dento-alveolar joint of incisor tooth." [Wikipedia:Gomphosis]
comment: This class was created automatically from a combination of ontologies
synonym: "dento-alveolar joint" EXACT []
synonym: "dento-alveolar syndesmosis" EXACT []
synonym: "gomphosis" EXACT []
synonym: "peg-and-socket joint" EXACT []
xref: FMA:7495
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray1003.png/200px-Gray1003.png
xref: MA:0001499
xref: OpenCyc:Mx4rveAQeZwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rvViH95wpEbGdrcN5Y29ycA
is_a: UBERON:0002209 ! fibrous joint
is_a: UBERON:0002213 ! cartilaginous joint
[Term]
id: UBERON:0001037
name: strand of hair
alt_id: UBERON:FBbt_00005182-FMA_53667-MA_0000155-MIAA_0000160
def: "A filament, mostly protein, that grows from follicles found in the dermis[WP]." [Wikipedia:Hair]
comment: this class defines an individual hair. todo - consider fur / coat of fur, which has_part hair. TODO: for now we treat vibrissa/whisker as a syonym, but these have different follicles. We could introduce subclasses (see also: Pangolin scales)
subset: uberon_slim
synonym: "coat hair" EXACT []
synonym: "coat/ hair" EXACT []
synonym: "fur" RELATED []
synonym: "hair" EXACT []
synonym: "microchaeta" RELATED []
synonym: "quill" RELATED SENSU []
synonym: "setulae" RELATED []
synonym: "vibrissa" RELATED SENSU []
synonym: "whisker" RELATED SENSU []
xref: BTO:0001501
xref: EFO:0000958
xref: FMA:53667
xref: GAID:71
xref: HOG:0001191
xref: MA:0000155
xref: MAT:0000160
xref: MIAA:0000160
xref: ncithesaurus:Hair
xref: OpenCyc:Mx4rvVjOX5wpEbGdrcN5Y29ycA-Mp88EdaAAACgycbRww
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0002073 ! hair follicle
relationship: part_of UBERON:0002199 ! integument
[Term]
id: UBERON:0001038
name: chordotonal organ
alt_id: UBERON:FBbt_00005215-MIAA_0000209
def: "Chordotonal organs are arthropod sensory structures consisting of special sensilla called the scolopidia, which are mechano-transducers and respond mainly to stretch or flexion. In insects, they consist of bundles of internal sensilla, each of which has a cap cell, an enveloping cell and one or more sense cells. The distal end of the organ is usually attached to the cuticle of the body wall, marked by a pit, a thickened disc or a nodule of chitin, and the base of the organ is connected with the hypodermis, often by a special ligament. // An auditory and vibration detector in insects" [FB:FBrf0056378, Wikipedia:Chordotonal_organ]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ch" RELATED []
synonym: "scolopophorous organ" RELATED []
xref: EFO:0000940
xref: FBbt:00005215
xref: MAT:0000209
xref: MIAA:0000209
is_a: UBERON:0000020 ! sense organ
[Term]
id: UBERON:0001040
name: yolk sac
alt_id: UBERON:FBbt_00005376-FMA_87180
def: "Membranous sac attached to an embryo, providing early nourishment in the form of yolk in bony fishes, sharks, reptiles, birds, and primitive mammals. It functions as the developmental circulatory system of the human embryo, before internal circulation begins. In the mouse, the yolk sac is the first site of blood formation, generating primitive macrophages and erythrocytes." [Wikipedia:Yolk_sac]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001471
xref: EHDAA:164
xref: EHDAA2:0002212
xref: FMA:87180
xref: GAID:1301
xref: HOG:0000830
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/17/Gray22.png/200px-Gray22.png
xref: ncithesaurus:Yolk_Sac
is_a: UBERON:0005631 ! extraembryonic membrane
[Term]
id: UBERON:0001041
name: foregut
alt_id: UBERON:FBbt_00005379-FMA_45616-MA_0001526-XAO_0000232
def: "Anterior subdivision of a digestive tract[CJM]. An anterior part of the alimentary canal derived from the ectoderm[WP]." [Wikipedia:Foregut]
comment: Note we define this generically to include invertebrates, but the class may be split in future. Note in FMA this class has no children - because its a dev classification?
subset: developmental_classification
subset: uberon_slim
xref: BILA:0000085
xref: BTO:0000507
xref: EHDAA:520
xref: EHDAA2:0000557
xref: FBbt:00005379
xref: FMA:45616
xref: HOG:0000285
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray27.png/200px-Gray27.png
xref: MA:0001526
xref: ncithesaurus:Foregut
xref: XAO:0000232
is_a: UBERON:0004921 ! subdivision of digestive tract
[Term]
id: UBERON:0001042
name: pharynx
alt_id: UBERON:FBbt_00005380-FMA_46688-MA_0000432-MIAA_0000049-WBbt_0003681-ZFA_0000056
def: "Region of alimentary canal between the cavity of the mouth and the esophagus[BTO]. funnel-shaped fibromuscular tube that conducts food to the ESOPHAGUS, and air to the LARYNYX and LUNGS. It is located posterior to the NASAL CAVITY; ORAL CAVITY; and LARYNX, and extends from the SKULL BASE to the inferior border of the CRICOID CARTILAGE anteriorly and to the inferior border of the C6 vertebra posteriorly. It is divided into the NASOPHARYNX; OROPHARYNX; and HYPOPHARYNX (laryngopharynx)[MESH]. the feeding organ, a neuro-muscular pump in the head of the animal, used to ingest food, bacteria suspended in liquid, filter them out, grind them up and transport posteriorly into the instestine[WBbt]. Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills[ZFA]." [WB:rynl, Wikipedia:Pharynx, ZFIN:curator]
comment: Consider splitting (Worm pharynx is a pump. WBbt digestive tract is split into intestine and pharynx; fly pharanx is in foregut). Note that MA/FMA pharynx not part of digestive/alimentary system, we follow their lead here
subset: uberon_slim
xref: BTO:0001049
xref: EFO:0000836
xref: EHDAA:2947
xref: EHDAA2:0001458
xref: FBbt:00005380
xref: FMA:46688
xref: GAID:155
xref: galen:Pharynx
xref: HOG:0000462
xref: MA:0000432
xref: MAT:0000049
xref: MIAA:0000049
xref: ncithesaurus:Pharynx
xref: OpenCyc:Mx4rvViv7ZwpEbGdrcN5Y29ycA
xref: TAO:0000056
xref: WBbt:0003681
xref: XAO:0003227
xref: ZFA:0000056
is_a: UBERON:0000477 ! anatomical cluster
relationship: continuous_with UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0001043
name: esophagus
alt_id: UBERON:FBbt_00005381-FMA_7131-MA_0000352-MIAA_0000048-XAO_0000127-ZFA_0000204
def: "Tube that connects the pharynx to the stomach." [Wikipedia:Esophagus]
comment: esophagus NOT part of gut in MA. part of gut in ZFA. part_of gut (via UGIT) in FMA. TODO split
subset: uberon_slim
synonym: "gullet" EXACT []
synonym: "oesophagus" EXACT []
xref: AAO:0000145
xref: BTO:0000959
xref: EFO:0000835
xref: EHDAA:2937
xref: EHDAA2:0001285
xref: FBbt:00005381
xref: FMA:7131
xref: GAID:291
xref: galen:Esophagus
xref: HOG:0000450
xref: MA:0000352
xref: MAT:0000048
xref: MIAA:0000048
xref: ncithesaurus:Esophagus
xref: OpenCyc:Mx4rvVj9Q5wpEbGdrcN5Y29ycA
xref: TAO:0000204
xref: XAO:0000127
xref: ZFA:0000204
is_a: UBERON:0000062 ! organ
is_a: UBERON:0005178 ! implied link automatically realized ! thoracic cavity organ
relationship: part_of UBERON:0001007 ! digestive system
relationship: part_of UBERON:0001041 ! foregut
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0001044
name: salivary gland
alt_id: UBERON:FBbt_00005382-FMA_9597-MA_0000346-MIAA_0000079
def: "saliva-secreting exocrine glands of the oral cavity[GO]. The salivary glands in mammals are exocrine glands, glands with ducts, that produce saliva. They also secrete amylase, an enzyme that breaks down starch into maltose. In other organisms such as insects, salivary glands are often used to produce biologically important proteins like silk or glues, and fly salivary glands contain polytene chromosomes that have been useful in genetic research[WP]." [GO:0007431, Wikipedia:Salivary_gland]
comment: currently we define saliva and salivary glands very generally in functional terms but it may be more appropriate to split this class. From WP: In most vertebrates, saliva does not contain any enzymes, consisting of mucus and water only, and its primary function is to moisten food while eating. As a result, true salivary glands are rarely found in fish or aquatic tetrapods, although there are often individual mucus-secreting cells. Amphibians have a single salivary gland, the intermaxillary gland, located in the forward part of the palate. Reptiles and birds normally have only very small glands on the lips, palate, and base of the mouth, although there are some birds with large glands, which produce a sticky saliva that helps in nest-building. The distinct parotid, submandibular, and sublingual glands are only developed in mammals.[3] The salivary glands of some species, however, are modified to produce enzymes; salivary amylase is found in many, but by no means all, bird and mammal species (including humans, as noted above). Furthermore, the venom glands of poisonous snakes, Gila monsters, and some shrews, are modified salivary glands
subset: functional_classification
subset: uberon_slim
xref: BTO:0001203
xref: EFO:0000859
xref: EHDAA:7987
xref: EHDAA2:0001775
xref: FBbt:00005382
xref: FMA:9597
xref: GAID:937
xref: galen:SalivaryGland
xref: HOG:0000376
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Illu_quiz_hn_02.jpg/200px-Illu_quiz_hn_02.jpg
xref: MA:0000346
xref: MAT:0000079
xref: MIAA:0000079
xref: ncithesaurus:Salivary_Gland
xref: OpenCyc:Mx4rvVjl5ZwpEbGdrcN5Y29ycA
is_a: UBERON:0002530 ! gland
is_a: UBERON:0003294 ! implied link automatically realized ! gland of foregut
relationship: secretes UBERON:0001836
intersection_of: UBERON:0002530 ! gland
intersection_of: secretes UBERON:0001836 ! saliva
relationship: part_of UBERON:0000167 ! oral cavity
relationship: part_of UBERON:0001041 ! foregut
[Term]
id: UBERON:0001045
name: midgut
alt_id: UBERON:FBbt_00005383-FMA_45617-MA_0001564-XAO_0000103
def: "Middle subdivision of a digestive tract[CJM]. In vertebrates: The middle part of the alimentary canal from the stomach, or entrance of the bile duct, to, or including, the large intestine[GO]. In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon. That part of the alimentary canal which lies between the gizzard and the hind intestine." [GO:0007494, Wikipedia:Midgut]
comment: Note we define this generically to include invertebrates, but the class may be split in future.
subset: developmental_classification
subset: uberon_slim
xref: BILA:0000086
xref: BTO:0000863
xref: EFO:0001950
xref: EHDAA:983
xref: EHDAA2:0001185
xref: FBbt:00005383
xref: FMA:45617
xref: HOG:0000290
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Illu_small_intestine.jpg/200px-Illu_small_intestine.jpg
xref: MA:0001564
xref: ncithesaurus:Midgut
xref: XAO:0000103
is_a: UBERON:0004921 ! subdivision of digestive tract
[Term]
id: UBERON:0001046
name: hindgut
alt_id: UBERON:FBbt_00005384-FMA_45618-MA_0001527-XAO_0000104
def: "Posterior subdivision of a digestive tract[CJM]." [Wikipedia:Hindgut]
comment: Note we define this generically to include invertebrates, but the class may be split in future.
subset: developmental_classification
subset: uberon_slim
xref: BILA:0000087
xref: BTO:0000510
xref: EHDAA:975
xref: EHDAA2:0000779
xref: FBbt:00005384
xref: FMA:45618
xref: HOG:0000459
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray472.png/200px-Gray472.png
xref: MA:0001527
xref: ncithesaurus:Hindgut
xref: XAO:0000104
is_a: UBERON:0004921 ! subdivision of digestive tract
[Term]
id: UBERON:0001047
name: neural glomerulus
alt_id: UBERON:FBbt_00005386
def: "Roundish subunit structure of synaptic neuropil, often ensheathed by glial lamellae and reflecting the terminal arborization domain(s) of one or more neurons[FBbt]. Large synaptic bouton found in areas like olfactory bulb, cerebellar cortex and thalamus, that contacts many post-synaptic targets[NIF]." [http://ccdb.ucsd.edu/SAO/images/glomerulus_sw_512x512.jpg, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Glomerulus]
comment: isa or partof neuropil? TODO. Add to GO?
subset: uberon_slim
synonym: "glomerulus" BROAD []
xref: FBbt:00005386
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1130.svg/200px-Gray1130.svg.png
xref: NIF_Subcellular:sao587858733
is_a: UBERON:0002606 ! neuropil
[Term]
id: UBERON:0001048
name: primordium
alt_id: UBERON:FBbt_00005495-FMA_86589-XAO_0003043
def: "Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue[FBbt]. An embryonic structure that is the rudiment or commencement of a part or organ." [BTO:0001886, FB:DJS, FB:FBrf0089570, FB:FBrf0178740, Wikipedia:Primordium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bud" RELATED []
synonym: "placode" RELATED []
xref: AEO:0000171
xref: BTO:0001886
xref: EFO:0001652
xref: EHDAA2:0003171
xref: FBbt:00005495
xref: FMA:86589
xref: MAT:0000482
xref: ncithesaurus:Primordium
xref: XAO:0003043
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0001049
name: neural tube
alt_id: UBERON:FBbt_00005554-MIAA_0000069-ZFA_0001135
def: "In the developing vertebrate, the neural tube is the embryo's precursor to the central nervous system, which comprises the brain and spinal cord. The neural groove gradually deepens as the neural folds become elevated, and ultimately the folds meet and coalesce in the middle line and convert the groove into a closed tube, the neural tube or neural canal (which strictly speaking is the center of the neural tube), the ectodermal wall of which forms the rudiment of the nervous system. [WP,unvetted]." [Wikipedia:Neural_tube]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "presumptive central nervous system" RELATED []
xref: BTO:0001057
xref: EHDAA:2869
xref: EHDAA:908
xref: EHDAA2:0001255
xref: EMAPA:16164
xref: EMAPA:16530
xref: EMAPA:16757
xref: HOG:0000307
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: MAT:0000069
xref: MIAA:0000069
xref: ncithesaurus:Neural_Tube
xref: TAO:0001135
xref: XAO:0003204
xref: ZFA:0001135
is_a: UBERON:0000025 ! tube
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0002346 ! neural ectoderm
relationship: develops_into UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0001050
name: atrium
alt_id: UBERON:FBbt_00005615-FMA_85574-ZFA_0000471
def: "Anatomical chamber. Examples: right atrium of heart, atrium of middle nasal meatus, atrium of tympanic cavity, atrium of alveolus." []
comment: GAT in FMA
subset: uberon_slim
xref: BTO:0000903
xref: EFO:0000277
xref: EHDAA:1265
xref: EHDAA2:0000154
xref: FMA:85574
xref: galen:Atrium
xref: MAT:0000496
xref: OpenCyc:Mx4rDJ89oqgPEdudWQACs5b6Bw
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0001051
name: hypopharynx
alt_id: UBERON:FBbt_00005751-FMA_54880-MA_0001796
def: "Bottom part of the pharynx, and is the part of the throat that connects to the esophagus." [Wikipedia:Hypopharynx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "laryngeal pharynx" EXACT []
synonym: "laryngopharynx" EXACT []
xref: BTO:0001740
xref: EFO:0001388
xref: FMA:54880
xref: GAID:338
xref: HOG:0000445
xref: MA:0001796
xref: ncithesaurus:Hypopharynx
xref: OpenCyc:Mx4rvq5O0JwpEbGdrcN5Y29ycA
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0001052
name: rectum
alt_id: UBERON:FBbt_00005756-FMA_14544-MA_0000336-MIAA_0000050-WBbt_0005773-XAO_0000238
def: "the final straight portion of the large intestine in some mammals, and the gut in others, terminating in the anus[WP]." [BTO:0001158, Wikipedia:Rectum]
comment: In the lungfish, sharks and rays the rectum opens into the cloaca which also receives wastes (urine) from the kidneys and material from the reproductive organs. In bony fish the rectum reaches the outside environment through the anus, which is normally situated just in front the urinary and reproductive openings. However in some fish the digestive tract may be curled back on itself, and in the Electric Eel (Electrophorus electricus) the anus is situated in the fish's throat.
subset: uberon_slim
synonym: "rectal sac" RELATED []
xref: BTO:0001158
xref: EFO:0000848
xref: EHDAA:5836
xref: EHDAA2:0001592
xref: FMA:14544
xref: GAID:311
xref: galen:Rectum
xref: HOG:0000427
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif
xref: MA:0000336
xref: MAT:0000050
xref: MIAA:0000050
xref: ncithesaurus:Rectum
xref: OpenCyc:Mx4rvVjaU5wpEbGdrcN5Y29ycA
xref: XAO:0000238
is_a: UBERON:0000063 ! organ segment
relationship: continuous_with UBERON:0001159 ! sigmoid colon
relationship: continuous_with UBERON:0001245 ! anus
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0001053
name: neurohemal organ
alt_id: UBERON:FBbt_00005757-MIAA_0000212
comment: This class was created automatically from a combination of ontologies
synonym: "neurohaemal organ" RELATED []
xref: BTO:0002106
xref: EFO:0000864
xref: FBbt:00005757
xref: MAT:0000212
xref: MIAA:0000212
is_a: UBERON:0000062 ! organ
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001054
name: malpighian tubule
alt_id: UBERON:FBbt_00005786-MIAA_0000123
def: "The most important structure of the insect's excretory organ, which may comprise cystiform or labyrinthine highly versatile tubules having their outlet into the inital section of the rectum[FBbt]. Any of a group of long blind vessels opening into the posterior part of the alimentary canal in most insects and some other arthropods and functioning primarily as excretory organs[BTO]." [ISBN:3110148986, Wikipedia:Malpighian_tubule]
subset: uberon_slim
xref: BTO:0000810
xref: EFO:0000243
xref: FBbt:00005786
xref: GAID:1228
xref: MAT:0000123
xref: MIAA:0000123
is_a: UBERON:0000025 ! tube
relationship: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0001055
name: ureter
alt_id: UBERON:FBbt_00005793-FMA_19667-FMA_9704-MA_0000378-MA_0000379-MIAA_0000120-MIAA_0000121-WBbt_0004540-WBbt_0005777-XAO_0000144-XAO_0000153
def: "the tube that conducts the urine from the renal pelvis to the bladder." [MP:0000534]
is_obsolete: true
consider: UBERON:0000056
consider: UBERON:0000057
[Term]
id: UBERON:0001056
name: corpus cardiacum
alt_id: UBERON:FBbt_00005799-MIAA_0000211
comment: This class was created automatically from a combination of ontologies
xref: BTO:0000432
xref: EFO:0000380
xref: FBbt:00005799
xref: MAT:0000211
xref: MIAA:0000211
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0001057
name: corpus allatum
alt_id: UBERON:FBbt_00005800-MIAA_0000210
def: "A neurosecretory organ forming part of the retrocerebral complex." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000291
xref: EFO:0000379
xref: FBbt:00005800
xref: MAT:0000210
xref: MIAA:0000210
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0001058
name: mushroom body
alt_id: UBERON:FBbt_00005801-MIAA_0000336
def: "Paired neuropils, thought to be crucial to olfactory associative learning and memory. Mushroom body neuropils are divided into calyces, pedunculus, and its subsequent lobes. In Drosophila these are the alpha, beta, and gamma lobes." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Mushroom_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0002675
xref: EFO:0000925
xref: FBbt:00005801
xref: GAID:1231
xref: MAT:0000336
xref: MIAA:0000336
is_a: UBERON:0000045 ! ganglion
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
is_a: UBERON:0003339 ! implied link automatically realized ! ganglion of central nervous system
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0001059
name: pars intercerebralis
alt_id: UBERON:FBbt_00005802-MIAA_0000337
def: "a neurosecretory center of the insect brain, located along the anterior midline[wiktionary]. A medial cleft or depression dividing the left and right protocerebrum and containing numerous large and small somata of neurosecretory and neuromodulatory neurons[FBbt]." [http://en.wiktionary.org/wiki/pars_intercerebralis, http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EFO:0000926
xref: FBbt:00005802
xref: MAT:0000337
xref: MIAA:0000337
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0001062
name: anatomical entity
alt_id: UBERON:FBbt_root_00000000-FMA_62955
def: "Biological entity, which constitutes the structural organization of a biological organism, or is an attribute of that organization. Examples: cell, heart, head, peritoneal cavity, apex of lung, anatomical term, sagittal plane." [CARO:MAH]
comment: This class was created automatically from a combination of ontologies
xref: AEO:0000000
xref: BILA:0000000
xref: EHDAA2:0002229
xref: FBbt_root:00000000
xref: FMA:62955
xref: HAO:0000000
xref: NIF_GrossAnatomy:birnlex_6
xref: TAO:0100000
xref: ZFA:0100000
[Term]
id: UBERON:0001063
name: flocculus
alt_id: UBERON:Flocculus-MA_0000992
def: "a small lobe of the cerebellum at the posterior border of the middle cerebellar peduncle anterior to the biventer lobule[WP]." [Wikipedia:Flocculus_(cerebellar)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: MA:0000992
xref: NIF_GrossAnatomy:birnlex_1329
is_a: UBERON:0002749 ! regional part of cerebellar cortex
relationship: part_of UBERON:0002245 ! hemisphere of cerebellum
[Term]
id: UBERON:0001064
name: pancreatic duct
alt_id: UBERON:FMA_10419-MA_0000124-ZFA_0001372
def: "a duct joining the pancreas to the common bile duct to supply pancreatic juices which aid in digestion provided by the exocrine pancreas. The pancreatic duct joins the common bile duct just prior to the ampulla of Vater, after which both ducts perforate the medial side of the second portion of the duodenum at the major duodenal papilla." [Wikipedia:Pancreatic_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "duct of pancreas" EXACT [OBOL:automatic]
synonym: "duct of Wirsung" EXACT [Wikipedia:Pancreatic_duct]
synonym: "pancreas duct" EXACT [OBOL:automatic]
xref: BTO:0002362
xref: EHDAA:9194
xref: FMA:10419
xref: GAID:337
xref: HOG:0000254
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1100.png/200px-Gray1100.png
xref: MA:0000124
xref: ncithesaurus:Pancreatic_Duct
xref: TAO:0001372
xref: ZFA:0001372
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001264
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0001264 ! pancreas
relationship: continuous_with UBERON:0001174 ! common bile duct
relationship: develops_from UBERON:0003922 ! pancreatic bud
relationship: part_of UBERON:0000017 ! exocrine pancreas
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0001065
name: parotid duct
alt_id: UBERON:FMA_10420-MA_0002697
def: "The parotid duct, also known as Stensen's duct, is the route that saliva takes from the parotid gland into the mouth. It passes through the buccal fat, buccopharyngeal fascia, and buccinator muscle then opens into the vestibule of the mouth opposite the upper second molar tooth. The buccinator acts as a valve that prevents inflation of the duct during blowing. Running along with the duct superiorly is the transverse facial artery and upper buccal nerve; running along with the duct inferiorly is the lower buccal nerve. [WP,unvetted]." [Wikipedia:Parotid_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "duct of parotid" EXACT [OBOL:automatic]
synonym: "duct of parotid gland" EXACT []
synonym: "parotid gland duct" EXACT [OBOL:automatic]
synonym: "stenon duct" EXACT []
synonym: "Stensen's duct" EXACT []
synonym: "Stensens's duct" EXACT []
xref: FMA:10420
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Gray1023.png/200px-Gray1023.png
xref: MA:0002697
xref: ncithesaurus:Parotid_Duct
is_a: UBERON:0001837 ! duct of salivary gland
relationship: part_of UBERON:0001831
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0001831 ! parotid gland
relationship: part_of UBERON:0001831 ! parotid gland
[Term]
id: UBERON:0001066
name: intervertebral disk
alt_id: UBERON:FMA_10446-MA_0000110
def: "cartiliginous organ that lies between adjacent vertebrae in the spine. Each disc forms a cartilaginous joint to allow slight movement of the vertebrae, and acts as a ligament to hold the vertebrae together[WP]." [Wikipedia:Intervertebral_disk]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intervertebral disc" EXACT []
synonym: "spinal disc" EXACT [Wikipedia:Spinal_disc]
xref: BTO:0003625
xref: EFO:0001370
xref: FMA:10446
xref: GAID:105
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray301.png/200px-Gray301.png
xref: MA:0000110
xref: ncithesaurus:Intervertebral_Disc
xref: OpenCyc:Mx4rv11AcpwpEbGdrcN5Y29ycA
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0005174 ! implied link automatically realized ! back organ
relationship: adjacent_to UBERON:0002412 ! vertebra
relationship: part_of UBERON:0001468 ! intervertebral symphysis
[Term]
id: UBERON:0001067
name: vertebral arch joint
alt_id: UBERON:FMA_10447-MA_0001513
def: "a synovial joint between the superior articular process of one vertebra and the inferior articular process of the vertebra directly above it. There are two facet joints in each spinal motion segment[WP]." [Wikipedia:Facet_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "facet joint" EXACT []
synonym: "joint of vertebral arch" EXACT []
synonym: "joint of vertebral articular process" EXACT []
synonym: "zygapophyseal joint" EXACT []
synonym: "zygapophysial joint" EXACT []
xref: FMA:10447
xref: GAID:275
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray90.png/200px-Gray90.png
xref: MA:0001513
xref: ncithesaurus:Facet_Joint
xref: OpenCyc:Mx4rvorHEpwpEbGdrcN5Y29ycA
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0005174 ! implied link automatically realized ! back organ
relationship: adjacent_to UBERON:0002412 ! vertebra
relationship: part_of UBERON:0003861 ! vertebral arch
[Term]
id: UBERON:0001068
name: skin of back
alt_id: UBERON:FMA_10462-MA_0000498
def: "A zone of skin that is part of a back [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "back skin" EXACT []
synonym: "back zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of back" EXACT [OBOL:automatic]
xref: FMA:10462
xref: FMA:22985
xref: MA:0000498
is_a: UBERON:0001085 ! skin of trunk
relationship: part_of UBERON:0001137
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001137 ! back
relationship: part_of UBERON:0001137 ! back
[Term]
id: UBERON:0001069
name: head of pancreas
alt_id: UBERON:FMA_10468-MA_0000122
def: "The head of pancreas is a portion of the pancreas that is lodged within the curve of the duodenum, and is flattened anteriorly (from before). The other parts of the pancreas are the body and the tail. Its upper border is overlapped by the superior part of the duodenum and its lower overlaps the horizontal part; its right and left borders overlap in front, and insinuate themselves behind, the descending and ascending parts of the duodenum respectively. [WP,unvetted]." [Wikipedia:Head_of_pancreas]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pancreas head" EXACT []
synonym: "pancreatic head" EXACT []
synonym: "right extremity of pancreas" EXACT []
xref: EHDAA2:0001374
xref: FMA:10468
xref: HOG:0000448
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Illu_pancreas_duodenum.jpg/200px-Illu_pancreas_duodenum.jpg
xref: MA:0000122
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0001070
name: external carotid artery
alt_id: UBERON:FMA_10635-MA_0001929-XAO_0000345-ZFA_0005022
def: "The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch. Isogai et al. 2001." [Wikipedia:External_carotid_artery, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "opercular artery" EXACT []
synonym: "ORA" RELATED []
xref: EFO:0001953
xref: EHDAA2:0000461
xref: FMA:10635
xref: GAID:480
xref: HOG:0000265
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/13/External_carotid_a.gif/200px-External_carotid_a.gif
xref: MA:0001929
xref: ncithesaurus:External_Carotid_Artery
xref: OpenCyc:Mx4rwVJkPZwpEbGdrcN5Y29ycA
xref: TAO:0005022
xref: XAO:0000345
xref: ZFA:0005022
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005396 ! carotid artery
relationship: develops_from UBERON:0003118 ! aortic arch 1
[Term]
id: UBERON:0001071
name: superficial cervical artery
alt_id: UBERON:FMA_10665-MA_0002052
def: "." [Wikipedia:Superficial_cervical_artery]
comment: The transverse cervical artery splits into two branches, a superficial one and a deep one[WP]
subset: uberon_slim
xref: FMA:10665
xref: MA:0002052
xref: ncithesaurus:Superficial_Cervical_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001072
name: inferior vena cava
alt_id: UBERON:FMA_10951-MA_0000480-XAO_0000388
def: "Trunk of systemic vein which is formed by the union of the right common iliac vein and the left common iliac vein and terminates in the right atrium." [Wikipedia:Inferior_vena_cava]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "posterior vena cava" EXACT []
xref: BTO:0002682
xref: FMA:10951
xref: GAID:548
xref: galen:InferiorVenaCava
xref: HOG:0001194
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray577.png/200px-Gray577.png
xref: MA:0000480
xref: ncithesaurus:Inferior_Vena_Cava
xref: XAO:0000388
is_a: UBERON:0004087 ! vena cava
[Term]
id: UBERON:0001073
name: ileocecal junction
alt_id: UBERON:FMA_11338-MA_0000332
comment: This class was created automatically from a combination of ontologies
synonym: "ileocaecal junction" EXACT []
xref: FMA:11338
xref: MA:0000332
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000160 ! intestine
[Term]
id: UBERON:0001074
name: pericardial cavity
alt_id: UBERON:FMA_11350-MA_0000053
def: "Cavity of serous sac surrounded by serous pericardium." [Wikipedia:Pericardial_cavity]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cavity of pericardial sac" EXACT []
xref: EHDAA2:0001434
xref: FMA:11350
xref: HOG:0000556
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png
xref: MA:0000053
xref: ncithesaurus:Pericardial_Cavity
xref: ZFA:0001655
is_a: UBERON:0002323 ! body cavity
relationship: part_of UBERON:0002406 ! pericardial sac
[Term]
id: UBERON:0001075
name: body of vertebra
alt_id: UBERON:FMA_11945-MA_0001457
def: "The body is the largest part of a vertebra, and is more or less cylindrical in shape. Its upper and lower surfaces are flattened and rough, and give attachment to the intervertebral fibrocartilages, and each presents a rim around its circumference. In front, the body is convex from side to side and concave from above downward. Behind, it is flat from above downward and slightly concave from side to side. Its anterior surface presents a few small apertures, for the passage of nutrient vessels. On the posterior surface is a single large, irregular aperture, or occasionally more than one, for the exit of the basi-vertebral veins from the body of the vertebra. [WP,unvetted]." [Wikipedia:Body_of_vertebra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "centrum" EXACT []
synonym: "corpus vertebrae (vertebrale)" EXACT []
synonym: "vertebral body" EXACT []
synonym: "vertebral centrum" EXACT []
xref: AAO:0000697
xref: FMA:11945
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Corpusvertebrae.png/200px-Corpusvertebrae.png
xref: MA:0001457
xref: ncithesaurus:Vertebral_Body
xref: OpenCyc:Mx4rvXU4VpwpEbGdrcN5Y29ycA
xref: ZFA:0000126
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001076
name: spinous process of vertebra
alt_id: UBERON:FMA_11948-MA_0001455
def: "The spinous process of a vertebra is directed backward and downward from the junction of the laminae (in humans), and serves for the attachment of muscles and ligaments. In animals without an erect stance, the process points upward and may slant forward or backward. Spinous processes are exaggerated in some animals, such as the extinct Dimetrodon and Spinosaurus, where they form a sail- or finback. [WP,unvetted]." [Wikipedia:Processus_spinosus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "neural spine" RELATED []
synonym: "processus spinosus" EXACT []
synonym: "vertebra spinous process" EXACT []
xref: AAO:0000705
xref: FMA:11948
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Processusspinosusvertebrae.png/200px-Processusspinosusvertebrae.png
xref: MA:0001455
xref: ZFA:0001336
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002412 ! vertebra
relationship: part_of UBERON:0003861 ! vertebral arch
[Term]
id: UBERON:0001077
name: transverse process of vertebra
alt_id: UBERON:FMA_11949-MA_0001456
def: "The transverse or costal processes of a vertebra, two in number, project one at either side from the point where the lamina joins the pedicle, between the superior and inferior articular processes. They serve for the attachment of muscles and ligaments. [WP,unvetted]." [Wikipedia:Processus_transversus]
subset: uberon_slim
synonym: "processus transversus" EXACT []
synonym: "transverse process" EXACT []
synonym: "vertebra transverse process" EXACT []
xref: FMA:11949
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Processustransversusvertebrae.PNG/200px-Processustransversusvertebrae.PNG
xref: MA:0001456
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001078
name: pedicle of vertebra
alt_id: UBERON:FMA_11950-MA_0001458
def: "The pedicles are two short, thick processes, which project backward, one on either side, from the upper part of the body, at the junction of its posterior and lateral surfaces. They connect the body of the spinal vertebra to the arch. [WP,unvetted]." [Wikipedia:Pedicle_of_vertebral_arch]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pedicle of vertebral arch" EXACT []
synonym: "vertebral pedicle" EXACT []
xref: FMA:11950
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Pediculusarcusvertebrae.png/200px-Pediculusarcusvertebrae.png
xref: MA:0001458
xref: OpenCyc:Mx4rvYdjdJwpEbGdrcN5Y29ycA
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001079
name: superior articular process of vertebra
alt_id: UBERON:FMA_11953-MA_0001452
comment: This class was created automatically from a combination of ontologies
synonym: "cranial articular process of vertebra" EXACT []
synonym: "prezygapophysis" RELATED []
synonym: "processus articularis superior" EXACT []
synonym: "vertebra cranial articular process" EXACT []
xref: AAO:0000703
xref: FMA:11953
xref: MA:0001452
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001080
name: inferior articular process of vertebra
alt_id: UBERON:FMA_11954-MA_0001451
comment: This class was created automatically from a combination of ontologies
synonym: "caudal articular process of vertebra" EXACT []
synonym: "postzygapophysis" RELATED []
synonym: "processus articularis inferior" EXACT []
synonym: "vertebra caudal articular process" EXACT []
xref: AAO:0000702
xref: FMA:11954
xref: MA:0001451
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001081
name: endocardium of ventricle
alt_id: UBERON:FMA_12148-MA_0000079-ZFA_0001615
def: "Endocardium that is part of the cardiac ventricle." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "cardiac ventricle endocardium" EXACT [OBOL:automatic]
synonym: "endocardium of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "endocardium of heart ventricle" EXACT [OBOL:automatic]
synonym: "endocardium of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "endocardium of ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart ventricle endocardium" EXACT [OBOL:automatic]
synonym: "lower chamber of heart endocardium" EXACT [OBOL:automatic]
synonym: "ventricle endocardium" EXACT []
synonym: "ventricle of heart endocardium" EXACT [OBOL:automatic]
synonym: "ventricular endocardium" EXACT []
xref: FMA:12148
xref: HOG:0000607
xref: MA:0000079
xref: ZFA:0001615
is_a: UBERON:0002165 ! endocardium
relationship: part_of UBERON:0002082
intersection_of: UBERON:0002165 ! endocardium
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0001082
name: epicardium of ventricle
alt_id: UBERON:FMA_12150-ZFA_0005058
def: "The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space. Hu et al. 2001.." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "cardiac ventricle epicardium" EXACT [OBOL:automatic]
synonym: "cardiac ventricle heart epicardium" EXACT [OBOL:automatic]
synonym: "cardiac ventricle visceral serous pericardium of heart" EXACT [OBOL:automatic]
synonym: "epicardium of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "epicardium of heart ventricle" EXACT [OBOL:automatic]
synonym: "epicardium of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "epicardium of ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart epicardium of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "heart epicardium of heart ventricle" EXACT [OBOL:automatic]
synonym: "heart epicardium of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "heart epicardium of ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart ventricle epicardium" EXACT [OBOL:automatic]
synonym: "heart ventricle heart epicardium" EXACT [OBOL:automatic]
synonym: "heart ventricle visceral serous pericardium of heart" EXACT [OBOL:automatic]
synonym: "lower chamber of heart epicardium" EXACT [OBOL:automatic]
synonym: "lower chamber of heart heart epicardium" EXACT [OBOL:automatic]
synonym: "lower chamber of heart visceral serous pericardium of heart" EXACT [OBOL:automatic]
synonym: "ventricle of heart epicardium" EXACT [OBOL:automatic]
synonym: "ventricle of heart heart epicardium" EXACT [OBOL:automatic]
synonym: "ventricle of heart visceral serous pericardium of heart" EXACT [OBOL:automatic]
synonym: "ventricular epicardium" EXACT []
synonym: "visceral serous pericardium of heart of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "visceral serous pericardium of heart of heart ventricle" EXACT [OBOL:automatic]
synonym: "visceral serous pericardium of heart of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "visceral serous pericardium of heart of ventricle of heart" EXACT [OBOL:automatic]
xref: FMA:12150
xref: TAO:0005058
xref: ZFA:0005058
is_a: UBERON:0002348 ! epicardium
relationship: part_of UBERON:0002082
intersection_of: UBERON:0002348 ! epicardium
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0001083
name: myocardium of ventricle
alt_id: UBERON:FMA_12151-MA_0000082-ZFA_0005061
def: "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "cardiac muscle of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle of heart ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle of ventricle of heart" EXACT [OBOL:automatic]
synonym: "cardiac ventricle cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac ventricle heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac ventricle heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac ventricle muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac ventricle myocardium" EXACT [OBOL:automatic]
synonym: "heart muscle of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle of heart ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "heart muscle of ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium of heart ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium of ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart ventricle cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart ventricle heart muscle" EXACT [OBOL:automatic]
synonym: "heart ventricle heart myocardium" EXACT [OBOL:automatic]
synonym: "heart ventricle muscle of heart" EXACT [OBOL:automatic]
synonym: "heart ventricle myocardium" EXACT [OBOL:automatic]
synonym: "lower chamber of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "lower chamber of heart heart muscle" EXACT [OBOL:automatic]
synonym: "lower chamber of heart heart myocardium" EXACT [OBOL:automatic]
synonym: "lower chamber of heart muscle of heart" EXACT [OBOL:automatic]
synonym: "lower chamber of heart myocardium" EXACT [OBOL:automatic]
synonym: "muscle of heart of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart of heart ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart of ventricle of heart" EXACT [OBOL:automatic]
synonym: "myocardium of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "myocardium of heart ventricle" EXACT [OBOL:automatic]
synonym: "myocardium of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "myocardium of ventricle of heart" EXACT [OBOL:automatic]
synonym: "ventricle myocardium" EXACT []
synonym: "ventricle of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "ventricle of heart heart muscle" EXACT [OBOL:automatic]
synonym: "ventricle of heart heart myocardium" EXACT [OBOL:automatic]
synonym: "ventricle of heart muscle of heart" EXACT [OBOL:automatic]
synonym: "ventricle of heart myocardium" EXACT [OBOL:automatic]
synonym: "ventricular myocardium" EXACT []
xref: FMA:12151
xref: HOG:0000604
xref: MA:0000082
xref: TAO:0005061
xref: ZFA:0005061
is_a: UBERON:0002349 ! implied link automatically realized ! myocardium
relationship: part_of UBERON:0002082
intersection_of: UBERON:0002349 ! myocardium
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0001084
name: skin of head
alt_id: UBERON:FMA_12166-MA_0000582
def: "A zone of skin that is part of a head [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "adult head zone of skin" EXACT [OBOL:automatic]
synonym: "head skin" EXACT []
synonym: "head zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of adult head" EXACT [OBOL:automatic]
synonym: "zone of skin of head" EXACT [OBOL:automatic]
xref: FMA:12166
xref: FMA:24756
xref: MA:0000582
xref: ncithesaurus:Head_Skin
is_a: UBERON:0000014 ! zone of skin
relationship: part_of UBERON:0000033
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0001085
name: skin of trunk
alt_id: UBERON:FMA_12167-MA_0000517
def: "A zone of skin that is part of a trunk [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "torso zone of skin" EXACT [OBOL:automatic]
synonym: "trunk skin" EXACT []
synonym: "trunk zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of torso" EXACT [OBOL:automatic]
synonym: "zone of skin of trunk" EXACT [OBOL:automatic]
xref: FMA:12167
xref: FMA:23093
xref: MA:0000517
is_a: UBERON:0000014 ! zone of skin
relationship: part_of UBERON:0002100
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0001086
name: articular cartilage
alt_id: UBERON:FMA_12264-MA_0000487-ZFA_0001644
def: "." [Wikipedia:Articular_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cartilago articularis" EXACT []
xref: BTO:0001572
xref: EFO:0001902
xref: FMA:12264
xref: GAID:101
xref: galen:ArticularCartilage
xref: MA:0000487
xref: ncithesaurus:Articular_Cartilage
xref: TAO:0001670
xref: ZFA:0001644
is_a: UBERON:0001994 ! hyaline cartilage
[Term]
id: UBERON:0001087
name: pleural fluid
alt_id: UBERON:FMA_12273-MA_0002532
def: "Transudate contained in the pleural cavity." [Wikipedia:Pleural_fluid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003080
xref: FMA:12273
xref: MA:0002532
xref: MAT:0000500
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001088
name: urine
alt_id: UBERON:FMA_12274-MA_0002545-MIAA_0000058
def: "Excretion in liquid state processed by the kidney." [Wikipedia:Urine]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001419
xref: EFO:0001939
xref: ENVO:00002047
xref: FMA:12274
xref: GAID:1189
xref: galen:Urine
xref: MA:0002545
xref: MAT:0000058
xref: MIAA:0000058
xref: ncithesaurus:Urine
xref: OpenCyc:Mx4rvVjGppwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001089
name: sweat
alt_id: UBERON:FMA_12275-MA_0002539
def: "Secretion produced by a sweat gland." [Wikipedia:Sweat]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001254
xref: ENVO:02000025
xref: FMA:12275
xref: GAID:1172
xref: MA:0002539
xref: ncithesaurus:Sweat
xref: OpenCyc:Mx4rvVjJtZwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001090
name: synovial fluid
alt_id: UBERON:FMA_12277-MA_0002544
def: "Transudate contained in the synovial cavity of joints, and in the cavity of tendon sheaths and bursae." [Wikipedia:Synovial_fluid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "joint fluid" EXACT []
xref: ENVO:02000039
xref: FMA:12277
xref: GAID:265
xref: galen:SynovialFluid
xref: MA:0002544
xref: ncithesaurus:Synovial_Fluid
xref: ZFA:0005154
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001091
name: calcareous tooth
alt_id: UBERON:FMA_12516-MA_0000348-MIAA_0000041-XAO_0000431-ZFA_0000644-ZFA_0000694
def: "Organ with a cavity which consist of dentine surrounded by enamel. Examples: incisor, molar." [Wikipedia:Tooth, Wikipedia:Tooth_(animal), ZFIN:curator]
subset: uberon_slim
synonym: "ceratobranchial 5 tooth" NARROW []
synonym: "dentine containing tooth" EXACT []
synonym: "tooth" EXACT []
synonym: "vertebrate tooth" EXACT []
xref: BTO:0000397
xref: EFO:0000839
xref: EHDAA:8009
xref: EHDAA:8045
xref: FMA:12516
xref: GAID:1260
xref: HOG:0000127
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Teeth_by_David_Shankbone.jpg/200px-Teeth_by_David_Shankbone.jpg
xref: MA:0000348
xref: MAT:0000041
xref: MIAA:0000041
xref: ncithesaurus:Tooth
xref: OpenCyc:Mx4rvVjUEZwpEbGdrcN5Y29ycA
xref: TAO:0000694
xref: XAO:0000431
xref: ZFA:0000694
is_a: UBERON:0003913 ! tooth-like structure
is_a: UBERON:0005176 ! implied link automatically realized ! tooth enamel organ
relationship: develops_from UBERON:0001048 ! primordium
relationship: has_part UBERON:0001751 ! dentine
relationship: has_part UBERON:0001752 ! enamel
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0001092
name: atlas
alt_id: UBERON:FMA_12519-MA_0001421
def: "." [Wikipedia:Atlas_(anatomy)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Atlas (CI)" EXACT []
synonym: "C1" BROAD []
synonym: "C1 vertebra" EXACT []
synonym: "cervical vertebra 1" EXACT []
synonym: "first cervical vertebra" EXACT []
xref: AAO:0000709
xref: EHDAA:10606
xref: FMA:12519
xref: GAID:236
xref: MA:0001421
xref: ncithesaurus:C1_Vertebra
is_a: UBERON:0002413 ! cervical vertebra
[Term]
id: UBERON:0001093
name: second cervical vertebra
alt_id: UBERON:FMA_12520-MA_0001422-ZFA_0000092
def: "second cervical vertebra (C2) of the spine." [Wikipedia:Axis_(anatomy)]
comment: note: not the same as ZFA term 'axis'
subset: uberon_slim
synonym: "axis (CII)" EXACT []
synonym: "C2" BROAD []
synonym: "C2 vertebra" EXACT []
synonym: "cervical axis" EXACT [MP:0004608]
synonym: "cervical vertebra 2" EXACT [MA:0001422]
xref: EHDAA:10608
xref: FMA:12520
xref: GAID:237
xref: MA:0001422
xref: ncithesaurus:Axis
xref: OpenCyc:Mx4rv-zaJJwpEbGdrcN5Y29ycA
xref: ZFA:0000092
is_a: UBERON:0002413 ! cervical vertebra
[Term]
id: UBERON:0001094
name: sacral vertebra
alt_id: UBERON:FMA_12526-XAO_0003078
def: "A vertebra that is part of a sacrum." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sacral segment" EXACT []
synonym: "segment of sacrum" EXACT []
xref: FMA:12526
xref: galen:SacralVertebra
xref: MA:0000313
xref: ncithesaurus:Sacral_Vertebra
xref: OpenCyc:Mx4rv-ZsXpwpEbGdrcN5Y29ycA
xref: XAO:0003078
is_a: UBERON:0002412 ! implied link automatically realized ! vertebra
relationship: part_of UBERON:0003690
intersection_of: UBERON:0002412 ! vertebra
intersection_of: part_of UBERON:0003690 ! sacrum
[Term]
id: UBERON:0001095
name: caudal vertebra
alt_id: UBERON:FMA_12527-XAO_0003079-ZFA_0000326
def: "bones in the tails of mammals. In zebrafish: Vertebra bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae." [Wikipedia:Caudal_vertebra, ZFIN:curator]
comment: TODO - split caudal vs coccygeal? FMA says these are exact, but MA has cocc as subtype of caudal (only 1 isa child). MP says caudal = coccyx or tail.
subset: uberon_slim
synonym: "caudal vertebrae" EXACT PLURAL []
synonym: "coccygeal segment" EXACT []
synonym: "coccygeal vertebra" EXACT [FMA:12527]
synonym: "coccygeal vertebrae" EXACT PLURAL []
xref: FMA:12527
xref: galen:CoccygealVertebra
xref: MA:0000310
xref: ncithesaurus:Coccygeal_Vertebra
xref: OpenCyc:Mx4rv9IEzZwpEbGdrcN5Y29ycA
xref: TAO:0000326
xref: XAO:0003079
xref: ZFA:0000326
is_a: UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001096
name: wall of esophagus
alt_id: UBERON:FMA_12611-MA_0002691
def: "An anatomical wall that is part of a esophagus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of esophagus" EXACT [OBOL:automatic]
synonym: "anatomical wall of gullet" EXACT [OBOL:automatic]
synonym: "anatomical wall of oesophagus" EXACT [OBOL:automatic]
synonym: "esophageal wall" EXACT []
synonym: "esophagus anatomical wall" EXACT [OBOL:automatic]
synonym: "esophagus wall" EXACT []
synonym: "gullet anatomical wall" EXACT [OBOL:automatic]
synonym: "gullet wall" EXACT [OBOL:automatic]
synonym: "oesophagus anatomical wall" EXACT [OBOL:automatic]
synonym: "oesophagus wall" EXACT [OBOL:automatic]
synonym: "wall of gullet" EXACT [OBOL:automatic]
synonym: "wall of oesophagus" EXACT [OBOL:automatic]
xref: FMA:12611
xref: MA:0002691
is_a: UBERON:0000060 ! anatomical wall
relationship: part_of UBERON:0001043
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0001097
name: axillary lymph node
alt_id: UBERON:FMA_12771-MA_0000735
def: "The Axillary lymph nodes are of large size, vary from twenty to thirty in number, and may be arranged in the following groups: brachial lymph nodes (or 'lateral') pectoral axillary lymph nodes (or 'anterior') subscapular axillary lymph nodes (or 'posterior') central lymph nodes apical lymph nodes (or 'medial' or 'subclavicular') [WP,unvetted]." [Wikipedia:Axillary_lymph_node, Wikipedia:Axillary_lymph_nodes]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "axillary node" EXACT []
xref: FMA:12771
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/73/Gray607.png/200px-Gray607.png
xref: MA:0000735
xref: ncithesaurus:Axillary_Lymph_Node
is_a: UBERON:0003968 ! peripheral lymph node
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001098
name: incisor tooth
alt_id: UBERON:FMA_12823-MA_0000349
def: "Incisors are the first kind of tooth in heterodont mammals. They are located in the premaxilla above and mandible below. [WP,unvetted]." [Wikipedia:Incisor_tooth]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "incisor" EXACT []
xref: BTO:0001741
xref: EHDAA:8011
xref: EHDAA:8047
xref: FMA:12823
xref: GAID:1263
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Gray997.png/200px-Gray997.png
xref: MA:0000349
xref: ncithesaurus:Incisor
xref: OpenCyc:Mx4rwP1ch5wpEbGdrcN5Y29ycA
is_a: UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0003672 ! dentition
[Term]
id: UBERON:0001099
name: subcostal vein
alt_id: UBERON:FMA_12845-MA_0002222
def: "The subcostal vein is a vein in the human body that runs along the bottom of the twelfth rib. It has the same essential qualities as the posterior intercostal veins, except that it cannot be considered intercostal because it is not between two ribs. Each subcostal vein gives off a posterior (dorsal) branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,unvetted]." [Wikipedia:Subcostal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:12845
xref: MA:0002222
xref: ncithesaurus:Subcostal_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001100
name: pectoralis minor
alt_id: UBERON:FMA_13109-MA_0002355
def: "The Pectoralis minor is a thin, triangular muscle, situated at the upper part of the chest, beneath the Pectoralis major. [WP,unvetted]." [Wikipedia:Pectoralis_minor]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:8313
xref: EHDAA2:0001425
xref: FMA:13109
xref: HOG:0000902
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Pectoralis_minor.png/200px-Pectoralis_minor.png
xref: MA:0002355
xref: ncithesaurus:Pectoralis_Minor
is_a: UBERON:0001495 ! pectoral muscle
[Term]
id: UBERON:0001101
name: external jugular vein
alt_id: UBERON:FMA_13110-MA_0002156
def: "The external jugular vein receives the greater part of the blood from the exterior of the cranium and the deep parts of the face, being formed by the junction of the posterior division of the posterior facial with the posterior auricular vein. [WP,unvetted]." [Wikipedia:External_jugular_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "external jugular" EXACT [EHDAA2:0000468]
synonym: "external jugular venous tree" EXACT []
xref: EHDAA2:0000468
xref: FMA:13110
xref: galen:ExternalJugularVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002156
xref: ncithesaurus:External_Jugular_Vein
xref: OpenCyc:Mx4rvrm0c5wpEbGdrcN5Y29ycA
xref: XAO:0000379
is_a: UBERON:0004711 ! jugular vein
[Term]
id: UBERON:0001102
name: cartilage of main bronchus
alt_id: UBERON:FMA_13117-MA_0001846
def: "A cartilage that is part of a main bronchus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchus principalis cartilage" EXACT [OBOL:automatic]
synonym: "cartilage of bronchus principalis" EXACT [OBOL:automatic]
synonym: "cartilage of primary bronchus" EXACT [OBOL:automatic]
synonym: "cartilage of principal bronchus" EXACT [OBOL:automatic]
synonym: "main bronchial cartilage" EXACT []
synonym: "main bronchus cartilage" EXACT []
synonym: "primary bronchus cartilage" EXACT [OBOL:automatic]
synonym: "principal bronchus cartilage" EXACT [OBOL:automatic]
xref: FMA:13117
xref: MA:0001846
is_a: UBERON:0001956 ! cartilage of bronchus
is_a: UBERON:0003590 ! implied link automatically realized ! main bronchus connective tissue
relationship: part_of UBERON:0002182
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0002182 ! main bronchus
relationship: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0001103
name: diaphragm
alt_id: UBERON:FMA_13295-MA_0001904
def: "The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs[GO]." [GO:0060539, Wikipedia:Diaphragm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "thoracic diaphragm" EXACT []
xref: BTO:0000341
xref: EFO:0000937
xref: FMA:13295
xref: GAID:158
xref: HOG:0000713
xref: MA:0001904
xref: MAT:0000502
xref: ncithesaurus:Diaphragm
xref: OpenCyc:Mx4rvVivz5wpEbGdrcN5Y29ycA
is_a: UBERON:0002426 ! chest muscle
is_a: UBERON:0003831 ! implied link automatically realized ! respiratory system muscle
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0001104
name: anterior jugular vein
alt_id: UBERON:FMA_13318-MA_0002155
def: "The anterior jugular vein begins near the hyoid bone by the confluence of several superficial veins from the submaxillary region. It descends between the median line and the anterior border of the Sternocleidomastoideus, and, at the lower part of the neck, passes beneath that muscle to open into the termination of the external jugular, or, in some instances, into the subclavian vein. It varies considerably in size, bearing usually an inverse proportion to the external jugular; most frequently there are two anterior jugulars, a right and left; but sometimes only one. Its tributaries are some laryngeal veins, and occasionally a small thyroid vein. Just above the sternum the two anterior jugular veins communicate by a transverse trunk, the venous jugular arch, which receive tributaries from the inferior thyroid veins; each also communicates with the internal jugular. There are no valves in this vein. [WP,unvetted]." [Wikipedia:Anterior_jugular_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior external jugular vein" EXACT []
xref: FMA:13318
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Gray558.png/200px-Gray558.png
xref: MA:0002155
xref: ncithesaurus:Anterior_Jugular_Vein
is_a: UBERON:0004711 ! jugular vein
[Term]
id: UBERON:0001105
name: clavicle
alt_id: UBERON:FMA_13321-MA_0001329
def: "In human anatomy, the clavicle or collar bone is classified as a flat bone that makes up part of the shoulder girdle. It receives its name from the Latin clavicula ('little key') because the bone rotates along its axis like a key when the shoulder is abducted. This movement is palpable. In some people, particularly females who may have less fat in this region, the location of the bone is clearly visible as it creates a bulge in the skin. [WP,unvetted]." [Wikipedia:Clavicle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "collar bone" EXACT []
xref: AAO:0000761
xref: FMA:13321
xref: GAID:182
xref: galen:Clavicle
xref: HOG:0000849
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Pectoral_girdles-en.svg/200px-Pectoral_girdles-en.svg.png
xref: MA:0001329
xref: ncithesaurus:Clavicle
xref: OpenCyc:Mx4rvVjijZwpEbGdrcN5Y29ycA
is_a: UBERON:0001440 ! skeleton of upper limb
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001106
name: cephalic vein
alt_id: UBERON:FMA_13324-MA_0002092
def: "In human anatomy, the cephalic vein is a superficial vein of the upper limb. It is also called the antecubital vein. It communicates with the basilic vein via the median cubital vein at the elbow and is located in the superficial fascia along the anterolateral surface of the biceps brachii muscle. Superiorly the cephalic vein passes between the deltoid and pectoralis major muscles and through the deltopectoral triangle, where it empties into the axillary vein. It is often visible through the skin, and its location in the deltopectoral groove is fairly consistent, making this site a good candidate for cannulation. It is often referred to as the 'House-man's Friend' for this reason and is generally a good place for cannulaton when a large bore cannula needs to be sited. [WP,unvetted]." [Wikipedia:Cephalic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cephalic vein of forearm" EXACT []
xref: FMA:13324
xref: galen:CephalicVein
xref: MA:0002092
xref: ncithesaurus:Cephalic_Vein
xref: OpenCyc:Mx4rwTpbQZwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0001107
name: sternohyoid
alt_id: UBERON:FMA_13341-MA_0002383-ZFA_0000283
def: "The sternohyoid muscle is a thin, narrow muscle attaching the hyoid bone to the sternum, one of the paired strap muscles of the infrahyoid muscles serving to depress the hyoid bone. It is innervated by the ansa cervicalis. The muscle arises from the posterior border of the medial end of the clavicle, the posterior sternoclavicular ligament, and the upper and posterior part of the manubrium sterni. Passing upward and medially, it is inserted by short tendinous fibers into the lower border of the body of the hyoid bone. [WP,unvetted]." [Wikipedia:Sternohyoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:13341
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Sternohyoid_muscle.PNG/200px-Sternohyoid_muscle.PNG
xref: MA:0002383
xref: ncithesaurus:Sternohyoid
xref: TAO:0000283
xref: ZFA:0000283
is_a: UBERON:0002376 ! implied link automatically realized ! muscle of head
is_a: UBERON:0002377 ! muscle of neck
relationship: part_of UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0002376 ! muscle of head
relationship: part_of UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0001108
name: omohyoid
alt_id: UBERON:FMA_13342-MA_0002348
def: "The omohyoid muscle is a muscle at the front of the neck that consists of two bellies separated by an intermediate tendon. It belongs to the group of infrahyoid muscles. [WP,unvetted]." [Wikipedia:Omohyoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:13342
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b0/Gray1210.png/200px-Gray1210.png
xref: MA:0002348
xref: ncithesaurus:Omohyoid
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001109
name: sternothyroid
alt_id: UBERON:FMA_13343-MA_0002386
def: "The Sternothyreoideus (or Sternothyroid muscle) is shorter and wider than the Sternohyoideus, beneath which it is situated. It arises from the posterior surface of the manubrium sterni, below the origin of the Sternohyoideus, and from the edge of the cartilage of the first rib, and sometimes that of the second rib, it is inserted into the oblique line on the lamina of the thyroid cartilage. This muscle is in close contact with its fellow at the lower part of the neck, but diverges somewhat as it ascends; it is occasionally traversed by a transverse or oblique tendinous inscription. [WP,unvetted]." [Wikipedia:Sternothyroid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:13343
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/10/Sternothyroideus.png/200px-Sternothyroideus.png
xref: MA:0002386
xref: ncithesaurus:Sternothyroid
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001110
name: thyrohyoid
alt_id: UBERON:FMA_13344-MA_0002393
def: "The Thyrohyoid muscle is a small, quadrilateral muscle appearing like an upward continuation of the Sternothyreoideus. It belongs to the infrahyoid muscles group. It arises from the oblique line on the lamina of the thyroid cartilage, and is inserted into the lower border of the greater cornu of the hyoid bone. [WP,unvetted]." [Wikipedia:Thyrohyoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:13344
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Thyrohyoid_muscle.PNG/200px-Thyrohyoid_muscle.PNG
xref: MA:0002393
xref: ncithesaurus:Thyrohyoid
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001111
name: intercostal muscle
alt_id: UBERON:FMA_13354-MA_0002324
def: "Intercostal muscles are several groups of muscles that run between the ribs, and help form and move the chest wall. There are three principal layers; the external intercostal muscles, which aid in quiet and forced inhalation. They originate on ribs 1-11 and have their insertion on ribs 2-12. The external intercostals are responsible for the elevation of the ribs, and expanding the transverse dimensions of the thoracic cavity. Located around the ribs the internal intercostal muscles, which aid in forced expiration (quiet expiration is a passive process). They originate on ribs 2-12 and have their insertions on ribs 1-11. The internal intercostals are responsible for the depression of the ribs decreasing the transverse dimensions of the thoracic cavity. the innermost intercostal muscle, the deep layers of the internal intercostal muscles which are separated from them by the neurovascular bundle. Both the external and internal muscles are innervated by the intercostal nerves, and are provided by the intercostal arteries and intercostal veins. Their fibers run in opposite directions. [WP,unvetted]." [Wikipedia:Intercostal_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intercostales" EXACT []
xref: EFO:0001368
xref: EHDAA2:0000841
xref: FMA:13354
xref: GAID:159
xref: HOG:0000903
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray411.png/200px-Gray411.png
xref: MA:0002324
xref: ncithesaurus:Intercostal_Muscle
xref: OpenCyc:Mx4rwQo8QJwpEbGdrcN5Y29ycA
is_a: UBERON:0002426 ! chest muscle
[Term]
id: UBERON:0001112
name: latissimus dorsi
alt_id: UBERON:FMA_13357-MA_0002331
def: "The latissimus dorsi is the larger, flat, dorso-lateral muscle on the trunk, posterior to the arm, and partly covered by the trapezius on its median dorsal region. [WP,unvetted]." [Wikipedia:Latissimus_dorsi]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:8307
xref: EHDAA2:0000932
xref: FMA:13357
xref: HOG:0000930
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Latissimus_dorsi.png/200px-Latissimus_dorsi.png
xref: MA:0002331
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0001113
name: lobe of liver
alt_id: UBERON:FMA_13361-MA_0000360
def: "Traditional gross anatomy divided the liver into four lobes based on surface features. The falciform ligament is visible on the front (anterior side) of the liver. This divides the liver into a left anatomical lobe, and a right anatomical lobe." [Wikipedia:Liver#Lobes]
comment: This class was created automatically from a combination of ontologies
synonym: "hepatic lobe" EXACT []
synonym: "liver lobe" EXACT []
synonym: "lobus hepatis" EXACT []
xref: FMA:13361
xref: MA:0000360
xref: ncithesaurus:Liver_Lobe
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0001114
name: right lobe of liver
alt_id: UBERON:FMA_13362-MA_0000363
def: "The right lobe is much larger than the left; the proportion between them being as six to one. It occupies the right hypochondrium, and is separated from the left lobe on its upper surface by the falciform ligament; on its under and posterior surfaces by the left sagittal fossa; and in front by the umbilical notch. It is of a somewhat quadrilateral form, its under and posterior surfaces being marked by three fossæ: the porta and the fossæ for the gall-bladder and inferior vena cava, which separate its left part into two smaller lobes; the quadrate and caudate lobes. [WP,unvetted]." [Wikipedia:Right_lobe_of_liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "liver right lobe" EXACT []
xref: EHDAA2:0001008
xref: FMA:13362
xref: HOG:0001424
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png
xref: MA:0000363
xref: ZFA:0005173
is_a: UBERON:0001113 ! lobe of liver
[Term]
id: UBERON:0001115
name: left lobe of liver
alt_id: UBERON:FMA_13363-MA_0000361
def: "The left lobe is smaller and more flattened than the right. It is situated in the epigastric and left hypochondriac regions. Its upper surface is slightly convex and is moulded on to the diaphragm; its under surface presents the gastric impression and omental tuberosity. [WP,unvetted]." [Wikipedia:Left_lobe_of_liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "left liver lobe" EXACT []
synonym: "liver left lobe" EXACT []
xref: EHDAA2:0001000
xref: FMA:13363
xref: HOG:0001423
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png
xref: MA:0000361
xref: ZFA:0005172
is_a: UBERON:0001113 ! lobe of liver
[Term]
id: UBERON:0001116
name: quadrate lobe of liver
alt_id: UBERON:FMA_13364-MA_0000365
def: "The quadrate lobe is an area of the liver situated on the under surface of the right lobe, bounded in front by the anterior margin of the liver; behind by the porta hepatis; on the right, by the fossa for the gall-bladder; and on the left, by the fossa for the umbilical vein. It is oblong in shape, its antero-posterior diameter being greater than its transverse. [WP,unvetted]." [Wikipedia:Quadrate_lobe_of_liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "liver quadrate lobe" EXACT []
synonym: "lobus quadratus" EXACT []
xref: FMA:13364
xref: HOG:0000509
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png
xref: MA:0000365
xref: ncithesaurus:Lobus_Quadratus
is_a: UBERON:0001114 ! right lobe of liver
[Term]
id: UBERON:0001117
name: caudate lobe of liver
alt_id: UBERON:FMA_13365-MA_0000364
def: "The caudate lobe (posterior hepatic segment I, Spigelian lobe) is situated upon the postero-superior surface of the liver on the right lobe of the liver, opposite the tenth and eleventh thoracic vertebrae. It is bounded on the left side by the physiological division of the liver called the ligamentum venosum. It is bounded, below, by the porta; on the right, by the fossa for the inferior vena cava; and, on the left, by the fossa for the ductus venosus. It looks backward, being nearly vertical in position; it is longer from above downward than from side to side, and is somewhat concave in the transverse direction. The caudate process is a small elevation of the hepatic substance extending obliquely and laterally, from the lower extremity of the caudate lobe to the under surface of the right lobe. It is situated behind the porta, and separates the fossa for the gall-bladder from the commencement of the fossa for the inferior vena cava. Budd-Chiari syndrome, caused by occlusion of hepatic venous outflow, can lead to hypertrophy of the caudate lobe due to its own caval anastomosis that allows for continued function of this lobe of the liver. [WP,unvetted]." [Wikipedia:Caudate_lobe_of_liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hepatovenous segment i" EXACT []
synonym: "liver caudate lobe" EXACT []
synonym: "liver caudate process" RELATED []
synonym: "lobus caudatus" EXACT []
synonym: "posterior hepatic segment i" EXACT []
synonym: "posterior liver" EXACT []
synonym: "posterior part of liver" EXACT []
synonym: "segment i of liver" EXACT []
synonym: "spiegelian lobe" EXACT []
synonym: "spigel lobe" EXACT []
xref: FMA:13365
xref: HOG:0000508
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray1087-liver.png/200px-Gray1087-liver.png
xref: MA:0000364
xref: ncithesaurus:Lobus_Caudatus
is_a: UBERON:0001114 ! right lobe of liver
relationship: part_of UBERON:0001113 ! lobe of liver
[Term]
id: UBERON:0001118
name: lobe of thyroid gland
alt_id: UBERON:FMA_13367-MA_0000131
def: "The lobes of the thyroid gland are conical in shape, the apex of each being directed upward and lateralward as far as the junction of the middle with the lower third of the thyroid cartilage; the base looks downward, and is on a level with the fifth or sixth tracheal ring. Each lobe is about 5 cm. long; its greatest width is about 3 cm. , and its thickness about 2 cm. The lateral or superficial surface is convex, and covered by the skin, the superficial and deep fasciæ, the Sternocleidomastoideus, the superior belly of the Omohyoideus, the Sternohyoideus and Sternothyreoideus, and beneath the last muscle by the pretracheal layer of the deep fascia, which forms a capsule for the gland. The deep or medial surface is moulded over the underlying structures, viz. , the thyroid and cricoid cartilages, the trachea, the Constrictor pharyngis inferior and posterior part of the Cricothyreoideus, the esophagus (particularly on the left side of the neck), the superior and inferior thyroid arteries, and the recurrent nerves. The anterior border is thin, and inclines obliquely from above downward toward the middle line of the neck, while the posterior border is thick and overlaps the common carotid artery, and, as a rule, the parathyroids. [WP,unvetted]." [Wikipedia:Lobes_of_thyroid_gland]
comment: This class was created automatically from a combination of ontologies
synonym: "lobus (glandula thyroidea)" EXACT []
synonym: "thyroid gland lobe" EXACT []
synonym: "thyroid lobe" EXACT []
xref: FMA:13367
xref: HOG:0000732
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9e/Gray1174.png/200px-Gray1174.png
xref: MA:0000131
xref: ncithesaurus:Thyroid_Gland_Lobe
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0001119
name: right lobe of thyroid gland
alt_id: UBERON:FMA_13368-MA_0000729
comment: This class was created automatically from a combination of ontologies
synonym: "lobus dexter (glandula thyroidea)" EXACT []
synonym: "right thyroid lobe" EXACT []
synonym: "thyroid gland right lobe" EXACT []
xref: FMA:13368
xref: HOG:0000733
xref: MA:0000729
is_a: UBERON:0001118 ! implied link automatically realized ! lobe of thyroid gland
relationship: in_right_side_of UBERON:0002046
intersection_of: UBERON:0001118 ! lobe of thyroid gland
intersection_of: in_right_side_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0001120
name: left lobe of thyroid gland
alt_id: UBERON:FMA_13369-MA_0000728
comment: This class was created automatically from a combination of ontologies
synonym: "left thyroid lobe" EXACT []
synonym: "lobus sinister (glandula thyroidea)" EXACT []
synonym: "thyroid gland left lobe" EXACT []
xref: FMA:13369
xref: HOG:0000734
xref: MA:0000728
is_a: UBERON:0001118 ! implied link automatically realized ! lobe of thyroid gland
relationship: in_left_side_of UBERON:0002046
intersection_of: UBERON:0001118 ! lobe of thyroid gland
intersection_of: in_left_side_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0001121
name: longus colli
alt_id: UBERON:FMA_13370-MA_0002341
def: "The Longus colli muscle is a muscle of the human body. The Longus colli is situated on the anterior surface of the vertebral column, between the atlas and the third thoracic vertebra. It is broad in the middle, narrow and pointed at either end, and consists of three portions, a superior oblique, an inferior oblique, and a vertical. The superior oblique portion arises from the anterior tubercles of the transverse processes of the third, fourth, and fifth cervical vertebræ and, ascending obliquely with a medial inclination, is inserted by a narrow tendon into the tubercle on the anterior arch of the atlas. The inferior oblique portion, the smallest part of the muscle, arises from the front of the bodies of the first two or three thoracic vertebræ; and, ascending obliquely in a lateral direction, is inserted into the anterior tubercles of the transverse processes of the fifth and sixth cervical vertebræ. The vertical portion arises, below, from the front of the bodies of the upper three thoracic and lower three cervical vertebræ, and is inserted into the front of the bodies of the second, third, and fourth cervical vertebræ. [WP,unvetted]." [Wikipedia:Longus_colli]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:13370
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Longus_colli.png/200px-Longus_colli.png
xref: MA:0002341
xref: ncithesaurus:Longus_Colli
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0001122
name: scalenus medius
alt_id: UBERON:FMA_13386-MA_0002370
def: "The Scalenus medius, the largest and longest of the three scalene muscles, arises from the posterior tubercles of the transverse processes of the lower six cervical vertebræ. It descendes along the side of the vertebral column to insert by a broad attachment into the upper surface of the first rib, between the tubercle and the subclavian groove. The brachial plexus and the subclavian artery pass anterior to it. Because it elevates the upper ribs, the middle scalene muscle is also one of the accessory muscles of respiration. [WP,unvetted]." [Wikipedia:Scalenus_medius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "medial scalene muscle" EXACT []
synonym: "middle scalene" EXACT []
xref: FMA:13386
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Scalenus_medius.png/200px-Scalenus_medius.png
xref: MA:0002370
xref: ncithesaurus:Scalenus_Medius
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001123
name: scalenus posterior
alt_id: UBERON:FMA_13387-MA_0002369
def: "The Scalenus posterior (Scalenus posticus), the smallest and most deeply seated of the three Scaleni, arises, by two or three separate tendons, from the posterior tubercles of the transverse processes of the lower two or three cervical vertebræ, and is inserted by a thin tendon into the outer surface of the second rib, behind the attachment of the Serratus anterior. It is occasionally blended with the Scalenus medius. [WP,unvetted]." [Wikipedia:Scalenus_posterior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "posterior scalene" EXACT []
synonym: "posterior scalene muscle" EXACT []
synonym: "scalenus dorsalis" EXACT []
xref: FMA:13387
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f3/Scalenus_posterior.png/200px-Scalenus_posterior.png
xref: MA:0002369
xref: ncithesaurus:Scalenus_Dorsalis
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001124
name: scapula
alt_id: UBERON:FMA_13394-MA_0001330-ZFA_0000583
def: "In anatomy, the scapula, omo (Medical Latin), or shoulder blade, is the bone that connects the humerus (arm bone) with the clavicle (collar bone). The scapula forms the posterior (back) located part of the shoulder girdle. In humans, it is a flat bone, roughly triangular in shape, placed on a posterolateral aspect of the thoracic cage. [WP,unvetted]." [Wikipedia:Scapula]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "shoulder blade" EXACT []
xref: AAO:0000751
xref: BTO:0001218
xref: EFO:0001400
xref: FMA:13394
xref: GAID:186
xref: galen:Scapula
xref: HOG:0001398
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Pectoral_girdles-en.svg/200px-Pectoral_girdles-en.svg.png
xref: MA:0001330
xref: ncithesaurus:Scapula
xref: OpenCyc:Mx4rvVji0JwpEbGdrcN5Y29ycA
xref: TAO:0000583
xref: ZFA:0000583
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003461 ! implied link automatically realized ! shoulder bone
relationship: part_of UBERON:0001440 ! skeleton of upper limb
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001125
name: serratus anterior
alt_id: UBERON:FMA_13397-MA_0002378
def: "The serratus anterior is a muscle that originates on the surface of the upper eight or nine ribs at the side of the chest and inserts along the entire anterior length of the medial border of the scapula. [WP,unvetted]." [Wikipedia:Serratus_anterior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Boxer's muscle" EXACT []
synonym: "serratus anterior muscle" EXACT []
synonym: "serratus ventralis" EXACT []
xref: EHDAA:9463
xref: EHDAA2:0001832
xref: FMA:13397
xref: HOG:0000679
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Serratus_anterior.png/200px-Serratus_anterior.png
xref: MA:0002378
xref: ncithesaurus:Serratus_Ventralis
xref: OpenCyc:Mx4rvWn_D5wpEbGdrcN5Y29ycA
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0001126
name: serratus posterior superior
alt_id: UBERON:FMA_13401-MA_0002377
def: "The Serratus posterior superior is a thin, quadrilateral muscle, situated at the upper and back part of the thorax. It arises by a thin and broad aponeurosis from the lower part of the ligamentum nuchae, from the spinous processes of the seventh cervical and upper two or three thoracic vertebræ and from the supraspinal ligament. Inclining downward and lateralward it becomes muscular, and is inserted, by four fleshy digitations, into the upper borders of the second, third, fourth, and fifth ribs, a little beyond their angles. [WP,unvetted]." [Wikipedia:Serratus_posterior_superior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "serratus dorsalis cranialis" EXACT []
synonym: "superior serratus posterior" EXACT []
xref: FMA:13401
xref: MA:0002377
xref: ncithesaurus:Serratus_Dorsalis_Cranialis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001127
name: serratus posterior inferior
alt_id: UBERON:FMA_13402-MA_0002376
def: "The Serratus posterior inferior muscle (or posterior serratus) is a muscle of the human body. [WP,unvetted]." [Wikipedia:Serratus_posterior_inferior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "inferior serratus posterior" EXACT []
synonym: "serratus dorsalis caudalis" EXACT []
xref: FMA:13402
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Serratus_posterior.PNG/200px-Serratus_posterior.PNG
xref: MA:0002376
xref: ncithesaurus:Serratus_Dorsalis_Caudalis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001128
name: sternocleidomastoid
alt_id: UBERON:FMA_13407-MA_0002384
def: "In human anatomy, the sternocleidomastoid muscle, also known as sternomastoid and commonly abbreviated as SCM, is a paired muscle in the superficial layers of the anterior portion of the neck. It acts to flex and rotate the head. It also acts as an accessory muscle of inspiration, along with the scalene muscles of the neck. [WP,unvetted]." [Wikipedia:Sternocleidomastoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sternocleidomastoid muscle" EXACT []
synonym: "sternomastoid" EXACT []
xref: FMA:13407
xref: HOG:0000853
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray512.png/200px-Gray512.png
xref: MA:0002384
xref: ncithesaurus:Sternocleidomastoid_Muscle
xref: OpenCyc:Mx4rv2bMg5wpEbGdrcN5Y29ycA
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001129
name: subscapularis
alt_id: UBERON:FMA_13413-MA_0002388
def: "The Subscapularis is a large triangular muscle which fills the subscapular fossa and inserts into the lesser tubercle of the humerus and the front of the capsule of the shoulder-joint. [WP,unvetted]." [Wikipedia:Subscapularis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "subscapularis muscle" EXACT []
xref: EHDAA:8317
xref: EHDAA2:0001943
xref: FMA:13413
xref: HOG:0000850
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray411.png/200px-Gray411.png
xref: MA:0002388
xref: ncithesaurus:Subscapularis
xref: OpenCyc:Mx4rviCRIJwpEbGdrcN5Y29ycA
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0001130
name: vertebral column
alt_id: UBERON:FMA_13478-MA_0002416-XAO_0003074-ZFA_0001559
def: "." [Wikipedia:Vertebral_column]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "backbone" EXACT []
synonym: "spinal column" EXACT []
synonym: "spine" EXACT []
xref: AAO:0000734
xref: BTO:0000818
xref: EFO:0001369
xref: EHDA:10119
xref: EMAPA:16666
xref: FMA:13478
xref: GAID:106
xref: galen:SpinalColumn
xref: HOG:0001142
xref: MA:0002416
xref: ncithesaurus:Vertebral_Column
xref: NIF_Subcellular:sao1145756102
xref: OpenCyc:Mx4rv2j-CpwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rv6GF55wpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rvVkFEpwpEbGdrcN5Y29ycA
xref: TAO:0001559
xref: XAO:0003074
xref: ZFA:0001559
is_a: UBERON:0000075 ! subdivision of skeletal system
relationship: part_of UBERON:0001137 ! back
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
[Term]
id: UBERON:0001131
name: vertebral foramen
alt_id: UBERON:FMA_13479-MA_0001454
def: "In a typical vertebra, the vertebral foramen is the foramen formed by the anterior segment, and the posterior part, the vertebral arch. The vertebral foramen begins at cervical vertebrae #1 and continues inferior to lumbar vertebrae #5. Within this foramen the spinal cord and associated meninges are housed. [WP,unvetted]." [Wikipedia:Vertebral_foramen]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vertebra neural canal" EXACT []
xref: FMA:13479
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/10/Foramenvertebrale.png/200px-Foramenvertebrale.png
xref: MA:0001454
xref: OpenCyc:Mx4rv_EvQZwpEbGdrcN5Y29ycA
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001132
name: parathyroid gland
alt_id: UBERON:FMA_13890-MA_0000128-MIAA_0000082-XAO_0000167
def: "The parathyroid gland is an organ specialised for secretion of parathyroid hormone[GO]. Parathyroid glands control the amount of calcium in the blood and within the bones[WP]." [Wikipedia:Parathyroid_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "inferior parathyroid" BROAD []
synonym: "parathyroid" EXACT []
synonym: "parathyroid secreting cell" RELATED []
synonym: "superior parrathyroid" BROAD []
xref: BTO:0000997
xref: EFO:0000862
xref: EHDAA2:0000821
xref: FMA:13890
xref: GAID:452
xref: HOG:0001188
xref: MA:0000128
xref: MAT:0000082
xref: MIAA:0000082
xref: ncithesaurus:Parathyroid_Gland
xref: XAO:0000167
is_a: UBERON:0002368 ! implied link automatically realized ! endocrine gland
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0001133
name: cardiac muscle tissue
alt_id: UBERON:FMA_14068-MA_0002441
def: "Muscle composed of cardiac muscle cells that is part of the heart[ZFA]. involuntary striated muscle found in the walls of the heart, specifically the myocardium[Wikipedia]. Tissue which consists of cardiac myocytes surrounded by cardiac endomysium. Examples: Cardiac muscle tissue proper, conducting tissue of heart[FMA]." [FMA:14068]
comment: check relationship with myocardium. part_of in MA - but we also have a more specific class 'cardiac muscle tissue of myocardium'
subset: uberon_slim
synonym: "cardiac muscle" EXACT []
synonym: "cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium" EXACT [OBOL:automatic]
xref: AEO:0000142
xref: BTO:0000199
xref: EHDAA2:0003142
xref: FMA:14068
xref: galen:CardiacMuscle
xref: galen:CardiacMuscleTissue
xref: MA:0002441
xref: ZFA:0005280
is_a: UBERON:0002036 ! striated muscle tissue
[Term]
id: UBERON:0001134
name: skeletal muscle tissue
alt_id: UBERON:FMA_14069-MA_0002439
def: "Tissue which consists of skeletal muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue of biceps, Skeletal muscle tissue of diaphragm[FMA]. Striated muscle tissue under control of the somatic nervous system. It is one of three major muscle types, the others being cardiac and smooth muscle. As its name suggests, most skeletal muscle is attached to bones by bundles of collagen fibers known as tendons. Skeletal muscle is made up of individual components known as muscle fibers. These fibers are formed from the fusion of developmental myoblasts. The myofibers are long, cylindrical, multinucleated cells composed of actin and myosin myofibrils repeated as a sarcomere, the basic functional unit of the cell and responsible for skeletal muscle's striated appearance and forming the basic machinery necessary for muscle contraction. The term muscle refers to multiple bundles of muscle fibers held together by connective tissue[WP]." [Wikipedia:Skeletal_muscle]
comment: TODO - add skeletal muscle organ? See GO:0060538 skeletal muscle organ development. Consider FBbt:00005073 - somatic muscle.
subset: uberon_slim
synonym: "skeletal muscle" EXACT []
xref: BTO:0001103
xref: EFO:0000888
xref: EHDAA:2923
xref: EHDAA:5035
xref: EHDAA:5043
xref: EHDAA:5978
xref: EHDAA:5984
xref: EHDAA:8277
xref: EHDAA:8291
xref: EHDAA:8326
xref: EHDAA:9146
xref: FMA:14069
xref: GAID:141
xref: HOG:0000319
xref: MA:0002439
xref: MAT:0000302
xref: MIAA:0000302
xref: ncithesaurus:Skeletal_Muscle_Tissue
xref: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA
xref: XAO:0000174
xref: ZFA:0005277
is_a: UBERON:0002036 ! striated muscle tissue
relationship: develops_from UBERON:0003082 ! myotome
[Term]
id: UBERON:0001135
name: smooth muscle tissue
alt_id: UBERON:FMA_14070-MA_0002440
def: "Smooth muscle differs from striated muscle in the much higher actin/myosin ratio, the absence of conspicuous sarcomeres and the ability to contract to a much smaller fraction of its resting length[GO]. Tissue which consists of smooth muscle fibers surrounded by a reticulum of collagen and elastic fibers. Examples: Arrector muscle of hair, Muscularis mucosae." [Wikipedia:Smooth_muscle_tissue]
comment: terminological note: GO uses visceral and smooth interchangeably. However visceral can also be used in the sense of the viscera. Many fly annotations to smooth muscle terms. If we want to be inclusive of insects have to have a general definition of tissue that includes cells. fly
subset: uberon_slim
synonym: "involuntary muscle" EXACT []
synonym: "non-striated muscle" EXACT []
synonym: "smooth muscle" EXACT []
synonym: "visceral muscle" NARROW SENSU []
synonym: "visceral muscle tissue" NARROW SENSU []
xref: AEO:0000141
xref: BTO:0001260
xref: EFO:0000889
xref: EHDAA2:0003141
xref: FBbt:00003525
xref: FMA:14070
xref: GAID:167
xref: galen:SmoothMuscle
xref: galen:SmoothMuscleTissue
xref: HOG:0001246
xref: MA:0000166
xref: MAT:0000303
xref: MIAA:0000303
xref: ncithesaurus:Smooth_Muscle_Tissue
xref: OpenCyc:Mx4rvvSS3pwpEbGdrcN5Y29ycA
xref: WBbt:0005781
xref: XAO:0000175
xref: ZFA:0005274
is_a: UBERON:0002385 ! muscle tissue
[Term]
id: UBERON:0001136
name: mesothelium
alt_id: UBERON:FMA_14074-MA_0000565
def: "Simple squamous epithelium of mesodermal origin which lines serous membranes. Examples: mesothelium of pleura, mesothelium of peritoneum. Wikipedia: The mesothelium is a membrane that forms the lining of several body cavities: the pleura (thoracal cavity), peritoneum (abdominal cavity including the mesentery) and pericardium (heart sac). Mesothelial tissue also surrounds the male internal reproductive organs (the tunica vaginalis testis) and covers the internal reproductive organs of women (the tunica serosa uteri). Mesothelium that covers the internal organs is called visceral mesothelium, while the layer that covers the body walls is called the parietal mesothelium." [http://en.wikipedia.org/wiki/Mesothelium, Wikipedia:Mesothelium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "meso-epithelium" EXACT []
xref: AEO:0000111
xref: BTO:0002422
xref: EHDAA:2331
xref: EHDAA:2339
xref: EHDAA:2349
xref: EHDAA:295
xref: EHDAA:6073
xref: EHDAA:640
xref: EHDAA:646
xref: EHDAA2:0003111
xref: FMA:14074
xref: MA:0000565
xref: ncithesaurus:Mesothelium
is_a: UBERON:0000487 ! implied link automatically realized ! simple squamous epithelium
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: adjacent_to UBERON:0000042
relationship: develops_from UBERON:0000926
intersection_of: UBERON:0000487 ! simple squamous epithelium
intersection_of: adjacent_to UBERON:0000042 ! serous membrane
intersection_of: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0001137
name: back
alt_id: UBERON:FMA_14181-MA_0000020
def: "In humans: large posterior area of the human body, rising from the top of the buttocks to the back of the neck and the shoulders. It is the surface opposite to the chest, its height being defined by the vertebral column (commonly referred to as the spine or backbone) and its breadth being supported by the ribcage and shoulders. The spinal canal runs through the spine and provides nerves to the rest of the body[WP]." [Wikipedia:Back]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EFO:0001405
xref: FMA:14181
xref: GAID:30
xref: galen:Back
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/432px-Gray-back.PNG/200px-432px-Gray-back.PNG
xref: MA:0000020
xref: ncithesaurus:Back
xref: OpenCyc:Mx4rvVkEU5wpEbGdrcN5Y29ycA
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0001138
name: superior mesenteric vein
alt_id: UBERON:FMA_14332-MA_0002179
def: "In anatomy, the superior mesenteric vein (SMV) is a blood vessel that drains blood from the small intestine. At its termination behind the neck of the pancreas, the SMV combines with the splenic vein to form the hepatic portal vein. The SMV lies to the right of the similarly named artery, the superior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]." [Wikipedia:Superior_mesenteric_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0002783
xref: EHDAA:5414
xref: EHDAA2:0001951
xref: FMA:14332
xref: HOG:0000552
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png
xref: MA:0002179
xref: ncithesaurus:Superior_Mesenteric_Vein
xref: OpenCyc:Mx4rwFjmM5wpEbGdrcN5Y29ycA
is_a: UBERON:0005617 ! mesenteric vein
[Term]
id: UBERON:0001139
name: common iliac vein
alt_id: UBERON:FMA_14333-MA_0002143
def: "In human anatomy, the common iliac veins are formed by the external iliac veins and internal iliac veins and together, in the abdomen at the level of the fifth lumbar vertebrae, form the inferior vena cava. They drain blood from the pelvis and lower limbs. Both common iliac veins are accompanied along their course by common iliac arteries. [WP,unvetted]." [Wikipedia:Common_iliac_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "common iliac venous tree" EXACT []
xref: FMA:14333
xref: galen:CommonIliacVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Iliac_veins.gif/200px-Iliac_veins.gif
xref: MA:0002143
xref: ncithesaurus:Common_Iliac_Vein
xref: OpenCyc:Mx4rv92CGZwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001140
name: renal vein
alt_id: UBERON:FMA_14334-MA_0002210
def: "The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted]." [Wikipedia:Renal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "kidney vein" EXACT [OBOL:automatic]
synonym: "renal venous tree" EXACT []
synonym: "vein of kidney" EXACT [OBOL:automatic]
xref: BTO:0002681
xref: EHDAA:8722
xref: EHDAA2:0001602
xref: FMA:14334
xref: GAID:544
xref: galen:RenalVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray1122.png/200px-Gray1122.png
xref: MA:0002210
xref: MA:0002591
xref: ncithesaurus:Renal_Vein
xref: OpenCyc:Mx4rvdUXKJwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003517 ! implied link automatically realized ! kidney blood vessel
relationship: part_of UBERON:0002113
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001141
name: right renal vein
alt_id: UBERON:FMA_14335-MA_0002212
comment: This class was created automatically from a combination of ontologies
xref: FMA:14335
xref: MA:0002212
xref: ncithesaurus:Right_Renal_Vein
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvdUXKJwpEbGdrcN5Y29ycA
is_a: UBERON:0001140 ! renal vein
[Term]
id: UBERON:0001142
name: left renal vein
alt_id: UBERON:FMA_14336-MA_0002211
def: "The renal veins are veins that drain the kidney. They connect the kidney to the inferior vena cava. It is usually singular to each kidney, except in the condition 'multiple renal veins'. It also divides into 2 divisions upon entering the kidney: the anterior branch which receives blood from the anterior portion of the kidney and, the posterior branch which receives blood from the posterior portion. Often, each renal vein will have a branch that receives blood from the ureter. [WP,unvetted]." [Wikipedia:Left_renal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:14336
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray1122.png/200px-Gray1122.png
xref: MA:0002211
xref: ncithesaurus:Left_Renal_Vein
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvdUXKJwpEbGdrcN5Y29ycA
is_a: UBERON:0001140 ! renal vein
[Term]
id: UBERON:0001143
name: hepatic vein
alt_id: UBERON:FMA_14337-XAO_0000387-ZFA_0000670
def: "In human anatomy, the hepatic veins are the blood vessels that drain de-oxygenated blood from the liver and blood cleaned by the liver into the inferior vena cava. They arise from the substance of the liver, more specifically the central vein of the liver lobule. None of the hepatic veins have valves. [WP,unvetted]." [Wikipedia:Hepatic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hepatic veins" RELATED []
synonym: "liver vein" EXACT [OBOL:automatic]
synonym: "vein of liver" EXACT [OBOL:automatic]
synonym: "vena hepatica" EXACT []
xref: FMA:14337
xref: GAID:534
xref: galen:HepaticVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray1121.png/200px-Gray1121.png
xref: ncithesaurus:Hepatic_Vein
xref: OpenCyc:Mx4rv5GivJwpEbGdrcN5Y29ycA
xref: TAO:0000670
xref: XAO:0000387
xref: ZFA:0000670
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel
relationship: part_of UBERON:0002107
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0001144
name: testicular vein
alt_id: UBERON:FMA_14344-MA_0002234
def: "The testicular vein (or spermatic vein), the male gonadal vein, carries deoxygenated blood from its corresponding testis to the inferior vena cava or one of its tributaries. It is the male equivalent of the ovarian vein, and is the venous counterpart of the testicular artery. It is a paired vein, with one supplying each testis: the right testicular vein generally joins the inferior vena cava; the left testicular vein, unlike the right, often joins the left renal vein instead of the inferior vena cava. The veins emerge from the back of the testis, and receive tributaries from the epididymis; they unite and form a convoluted plexus, called the pampiniform plexus, which constitutes the greater mass of the spermatic cord; the vessels composing this plexus are very numerous, and ascend along the cord, in front of the ductus deferens. Below the subcutaneous inguinal ring, they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins, which ascend on the Psoas major, behind the peritoneum, lying one on either side of the internal spermatic artery. These unite to form a single vein, which opens, on the right side, into the inferior vena cava (at an acute angle), on the left side into the left renal vein (at a right angle). The spermatic veins are provided with valves. The left spermatic vein passes behind the iliac colon and is thus exposed to pressure from the contents of that part of the bowel. [WP,unvetted]." [Wikipedia:Testicular_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "male gonadal vein" EXACT [Wikipedia:Testicular_vein]
synonym: "spermatic vein" EXACT [Wikipedia:Testicular_vein]
synonym: "testicle vein" EXACT [OBOL:automatic]
synonym: "testicular venous tree" EXACT [Wikipedia:Testicular_vein]
synonym: "vein of testicle" EXACT [OBOL:automatic]
xref: BTO:0002678
xref: FMA:14344
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Gray590.png/200px-Gray590.png
xref: MA:0002234
xref: OpenCyc:Mx4rv1WIHpwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001145
name: ovarian vein
alt_id: UBERON:FMA_14346-MA_0002186
def: "The ovarian vein, the female gonadal vein, carries deoxygenated blood from its corresponding ovary to inferior vena cava or one of its tributaries. It is the female equivalent of the testicular vein, and is the venous counterpart of the ovarian artery. It can be found in the suspensory ligament of the ovary. It a paired vein, with one supplying each ovary. The right ovarian vein travels through the suspensatory ligament of the ovary and generally joins the inferior vena cava. The left ovarian vein, unlike the right, often joins the left renal vein instead of the inferior vena cava. [WP,unvetted]." [Wikipedia:Ovarian_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "female reproductive system gonad vein" EXACT [OBOL:automatic]
synonym: "female reproductive system gonada vein" EXACT [OBOL:automatic]
synonym: "gonad of female reproductive system vein" EXACT [OBOL:automatic]
synonym: "gonada of female reproductive system vein" EXACT [OBOL:automatic]
synonym: "ovary vein" EXACT [OBOL:automatic]
synonym: "vein of female reproductive system gonad" EXACT [OBOL:automatic]
synonym: "vein of female reproductive system gonada" EXACT [OBOL:automatic]
synonym: "vein of gonad of female reproductive system" EXACT [OBOL:automatic]
synonym: "vein of gonada of female reproductive system" EXACT [OBOL:automatic]
synonym: "vein of ovary" EXACT [OBOL:automatic]
xref: FMA:14346
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Ovarschaf.jpg/200px-Ovarschaf.jpg
xref: MA:0002186
xref: ncithesaurus:Ovarian_Vein
xref: OpenCyc:Mx4rvrST5ZwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003848 ! implied link automatically realized ! gonadal vein
relationship: part_of UBERON:0000992
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0000992 ! ovary
[Term]
id: UBERON:0001146
name: suprarenal vein
alt_id: UBERON:FMA_14348-MA_0002229
def: "The Suprarenal veins are two in number: the right ends in the inferior vena cava. the left ends in the left renal or left inferior phrenic vein. They receive blood from the adrenal glands and will sometimes form anastomoses with the inferior phrenic veins. [WP,unvetted]." [Wikipedia:Suprarenal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:8731
xref: EHDAA2:0001966
xref: FMA:14348
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray1122.png/200px-Gray1122.png
xref: MA:0002229
xref: ncithesaurus:Suprarenal_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001147
name: trunk of peripheral nerve
alt_id: UBERON:FMA_14383-MA_0000229
comment: This class was created automatically from a combination of ontologies
synonym: "peripheral nerve trunk" EXACT []
synonym: "peripheral neural trunk" EXACT []
xref: FMA:14383
xref: MA:0000229
is_a: UBERON:0002464 ! nerve trunk
[Term]
id: UBERON:0001148
name: median nerve
alt_id: UBERON:FMA_14385-MA_0001168
def: "The median nerve is a nerve in humans and other animals. It is in the upper limb. It is one of the five main nerves originating from the brachial plexus. The median nerve is formed from parts of the medial and lateral cords of the brachial plexus, and continues down the arm to enter the forearm with the brachial artery. It originates from the brachial plexus with roots from C5, C6, C7, C8 & T1. The median nerve is the only nerve that passes through the carpal tunnel, where it may be compressed to cause carpal tunnel syndrome. [WP,unvetted]." [Wikipedia:Median_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:5648
xref: EHDAA2:0001086
xref: FMA:14385
xref: GAID:843
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Nerves_of_the_left_upper_extremity.gif/200px-Nerves_of_the_left_upper_extremity.gif
xref: MA:0001168
xref: ncithesaurus:Median_Nerve
xref: OpenCyc:Mx4rwF4HF5wpEbGdrcN5Y29ycA
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve
relationship: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001814 ! brachial nerve plexus
[Term]
id: UBERON:0001149
name: bare area of liver
alt_id: UBERON:FMA_14480-MA_0000359
comment: This class was created automatically from a combination of ontologies
synonym: "area nuda (hepar)" EXACT []
synonym: "area nuda hepatis" EXACT []
synonym: "liver bare area" EXACT []
xref: FMA:14480
xref: MA:0000359
is_a: UBERON:0000466 ! immaterial anatomical entity
relationship: part_of UBERON:0001114 ! right lobe of liver
[Term]
id: UBERON:0001150
name: body of pancreas
alt_id: UBERON:FMA_14518-MA_0000121
def: "The body of the pancreas is a subsection of the pancreas organ in the human body. It is somewhat prismatic in shape, and has three surfaces: anterior, posterior, and inferior. It is at the same level as the transpyloric plane. [WP,unvetted]." [Wikipedia:Body_of_pancreas]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pancreas body" EXACT []
synonym: "pancreas corpus" RELATED []
synonym: "pancreatic body" EXACT []
xref: EHDAA2:0001368
xref: FMA:14518
xref: HOG:0000451
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Illu_pancreas_duodenum.jpg/200px-Illu_pancreas_duodenum.jpg
xref: MA:0000121
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0001151
name: tail of pancreas
alt_id: UBERON:FMA_14519-MA_0000123
def: "The tail of the pancreas, located anatomically left near the hilum of the spleen, is not simply an anatomical distinction. The tail is the only part of the pancreas which contains Pancreatic Polypeptide (PP) cells, which are responsible for secreting pancreatic polypeptide to coordinate exocrine and islet enzyme release. PP cells are found in the tail's periphery. Beta cells and delta cells are found in the central part of the tail as with the rest of the pancreas. The cells described above are located exclusively in the islet cells; their secretions reach exocrine portions of the pancreas via the capillary network surrounding the islet cell populations. [WP,unvetted]." [Wikipedia:Tail_of_pancreas]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "left extremity of pancreas" EXACT []
synonym: "pancreas tail" EXACT []
synonym: "pancreatic tail" EXACT []
xref: EHDAA2:0001390
xref: FMA:14519
xref: HOG:0000452
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Illu_pancreas_duodenum.jpg/200px-Illu_pancreas_duodenum.jpg
xref: MA:0000123
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0001152
name: cystic duct
alt_id: UBERON:FMA_14539-MA_0000355
def: "The cystic duct is the short duct that joins the gall bladder to the common bile duct. It usually lies next to the cystic artery. It is of variable length. It contains a 'spiral valve', which does not provide much resistance to the flow of bile. [WP,unvetted]." [Wikipedia:Cystic_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:3045
xref: EHDAA2:0000333
xref: FMA:14539
xref: GAID:290
xref: galen:CysticDuct
xref: HOG:0000213
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png
xref: MA:0000355
xref: ncithesaurus:Cystic_Duct
xref: OpenCyc:Mx4rveBeC5wpEbGdrcN5Y29ycA
xref: ZFA:0005166
is_a: UBERON:0002394 ! bile duct
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001173 ! biliary tree
[Term]
id: UBERON:0001153
name: cecum
alt_id: UBERON:FMA_14541-MA_0000334-MIAA_0000288
def: "Pouch, connecting the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction." [Wikipedia:Cecum]
comment: The cecum is present in mammals and squid,[1] and two ceca are present in most birds (and some reptiles). Most herbivores have a relatively large cecum , hosting a large number of bacteria, which aid in the enzymatic breakdown of plant materials such as cellulose. Exclusive carnivores, whose diets contain little or no plant material, have a reduced cecum; often partially or wholly replaced by the vermiform appendix. It is in the large intestine which is near the small intestine.
subset: uberon_slim
synonym: "caecum" EXACT []
synonym: "intestinum crassum caecum" EXACT []
xref: BTO:0000166
xref: EFO:0000850
xref: EHDAA:3913
xref: EHDAA2:0000206
xref: FMA:14541
xref: GAID:307
xref: galen:Cecum
xref: HOG:0001559
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Stomach_colon_rectum_diagram.svg/200px-Stomach_colon_rectum_diagram.svg.png
xref: MA:0000334
xref: MIAA:0000288
xref: ncithesaurus:Cecum
xref: OpenCyc:Mx4rve6u4JwpEbGdrcN5Y29ycA
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001156 ! ascending colon
[Term]
id: UBERON:0001154
name: appendix
alt_id: UBERON:FMA_14542-MA_0001540-MIAA_0000287
def: "Organ with organ cavity which is continuous proximally with the cecum and distally terminates in the tip of the appendix. Examples: There is only one appendix.[FMA]. a narrowed, thickened, lymphoid-rich caecal apex [Fisher 2000]." [Wikipedia:Vermiform_appendix]
subset: uberon_slim
synonym: "apex of cecum" RELATED []
synonym: "caecal appendix" EXACT []
synonym: "vermiform appendix" EXACT []
synonym: "vermix" EXACT []
xref: BTO:0000084
xref: EFO:0000849
xref: FMA:14542
xref: GAID:308
xref: HOG:0001306
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ad/Gray536.png/200px-Gray536.png
xref: MA:0001540
xref: MAT:0000287
xref: MIAA:0000287
xref: ncithesaurus:Vermiform_Appendix
xref: OpenCyc:Mx4rvVjGgJwpEbGdrcN5Y29ycA
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001153 ! cecum
[Term]
id: UBERON:0001155
name: colon
alt_id: UBERON:FMA_14543-FMA_7201-MA_0000333-MA_0000335-MAP_0000001-MIAA_0000046-XAO_0000131-XAO_0000243-ZFA_0000706
def: "Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005." [Wikipedia:Colon_(anatomy), ZFIN:curator]
comment: TODO: abstract this such that it legitemately covers all vertebrates
subset: uberon_slim
synonym: "hindgut" RELATED []
synonym: "large bowel" EXACT []
synonym: "posterior intestine" NARROW []
synonym: "posterior intestine - zebrafish" BROAD []
xref: BTO:0000269
xref: EFO:0000361
xref: EHDAA2:0000779
xref: FMA:14543
xref: GAID:309
xref: galen:Colon
xref: HOG:0000648
xref: MA:0000335
xref: MAP:0000001
xref: MAT:0000526
xref: ncithesaurus:Colon
xref: OpenCyc:Mx4rvgLEM5wpEbGdrcN5Y29ycA
xref: TAO:0000706
xref: XAO:0000243
xref: ZFA:0000706
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0000168 ! implied link automatically realized ! segment of colon
relationship: part_of UBERON:0000059 ! large intestine
[Term]
id: UBERON:0001156
name: ascending colon
alt_id: UBERON:FMA_14545-MA_0001541-MIAA_0000311
def: "Organ part which is continuous with the cecum proximally and the transverse colon distally." [Wikipedia:Ascending_colon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EFO:0000843
xref: FMA:14545
xref: galen:AscendingColon
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Dickdarm-Schema.svg/200px-Dickdarm-Schema.svg.png
xref: MA:0001541
xref: MAT:0000311
xref: MIAA:0000311
xref: ncithesaurus:Ascending_Colon
xref: OpenCyc:Mx4rv3H0FZwpEbGdrcN5Y29ycA
is_a: UBERON:0000168 ! segment of colon
is_a: UBERON:0001155 ! colon
relationship: continuous_with UBERON:0001157 ! transverse colon
[Term]
id: UBERON:0001157
name: transverse colon
alt_id: UBERON:FMA_14546-MA_0001543-MIAA_0000312
def: "The transverse colon the longest and most movable part of the colon, passes with a downward convexity from the right hypochondrium region across the abdomen, opposite the confines of the epigastric and umbilical zones, into the left hypochondrium region, where it curves sharply on itself beneath the lower end of the spleen, forming the splenic or left colic flexure. The right colic flexure is adjacent to the liver. In its course, it describes an arch, the concavity of which is directed backward and a little upward; toward its splenic end there is often an abrupt U-shaped curve which may descend lower than the main curve. It is almost completely invested by peritoneum, and is connected to the inferior border of the pancreas by a large and wide duplicature of that membrane, the transverse mesocolon. It is in relation, by its upper surface, with the liver and gall-bladder, the greater curvature of the stomach, and the lower end of the spleen; by its under surface, with the small intestine; by its anterior surface, with the anterior layers of the greater omentum and the abdominal parietes; its posterior surface is in relation from right to left with the descending portion of the duodenum, the head of the pancreas, and some of the convolutions of the jejunum and ileum. [WP,unvetted]." [Wikipedia:Transverse_colon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EFO:0000844
xref: FMA:14546
xref: galen:TransverseColon
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Dickdarm-Schema.svg/200px-Dickdarm-Schema.svg.png
xref: MA:0001543
xref: MAT:0000312
xref: MIAA:0000312
xref: ncithesaurus:Transverse_Colon
xref: OpenCyc:Mx4rvg7qyJwpEbGdrcN5Y29ycA
is_a: UBERON:0000168 ! segment of colon
is_a: UBERON:0001155 ! colon
relationship: continuous_with UBERON:0001158 ! descending colon
[Term]
id: UBERON:0001158
name: descending colon
alt_id: UBERON:FMA_14547-MA_0001542-MIAA_0000313
def: "The descending colon of humans passes downward through the left hypochondrium and lumbar regions, along the lateral border of the left kidney. At the lower end of the kidney it turns medialward toward the lateral border of the psoas muscle, and then descends, in the angle between psoas and quadratus lumborum, to the crest of the ilium, where it ends in the sigmoid colon. The peritoneum covers its anterior surface and sides, and therefore the descending colon is described as retroperitoneal. (The transverse colon and sigmoid colon, which are immediately proximal and distal, are intraperitoneal). Its posterior surface is connected by areolar tissue with the lower and lateral part of the left kidney, the aponeurotic origin of the transversus abdominis, and the quadratus lumborum. It is smaller in caliber and more deeply placed than the ascending colon. It has a mesentery in 33% of people, and is therefore more frequently covered with peritoneum on its posterior surface than the ascending colon (which has a mesentery in 25% of people). However, it is less likely to undergo volvulus than the ascending colon. In front of it are some coils of small intestine. [WP,unvetted]." [Wikipedia:Descending_colon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EFO:0000845
xref: FMA:14547
xref: galen:DescendingColon
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ca/Gray1223.png/200px-Gray1223.png
xref: MA:0001542
xref: MAT:0000313
xref: MIAA:0000313
xref: ncithesaurus:Descending_Colon
xref: OpenCyc:Mx4rwHsNhpwpEbGdrcN5Y29ycA
is_a: UBERON:0000168 ! segment of colon
is_a: UBERON:0001155 ! colon
relationship: continuous_with UBERON:0001159 ! sigmoid colon
[Term]
id: UBERON:0001159
name: sigmoid colon
alt_id: UBERON:FMA_14548-MIAA_0000314
def: "the part of the large intestine that is closest to the rectum and anus. It forms a loop that averages about 40 cm. in length, and normally lies within the pelvis, but on account of its freedom of movement it is liable to be displaced into the abdominal cavity." [Wikipedia:Sigmoid_colon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "colon sigmoideum" RELATED []
synonym: "pelvic colon" RELATED []
synonym: "sigmoid colon" RELATED []
synonym: "sigmoid flexure" RELATED []
xref: BTO:0000645
xref: EFO:0000846
xref: FMA:14548
xref: galen:SigmoidColon
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Dickdarm-Schema.svg/200px-Dickdarm-Schema.svg.png
xref: MAT:0000314
xref: MIAA:0000314
xref: ncithesaurus:Sigmoid_Colon
xref: OpenCyc:Mx4rwHX_-5wpEbGdrcN5Y29ycA
is_a: UBERON:0000168 ! segment of colon
relationship: continuous_with UBERON:0001052 ! rectum
[Term]
id: UBERON:0001160
name: fundus of stomach
alt_id: UBERON:FMA_14559-MA_0001612
def: "The fundus is the portion of the stomach that lies above the cardiac notch[GO]." [GO:0014825, Wikipedia:Fundus_of_stomach]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fundus gastricus (ventricularis)" EXACT []
synonym: "gastric fundus" RELATED []
synonym: "stomach fundus" EXACT []
xref: BTO:0000502
xref: EFO:0002554
xref: EHDAA2:0001919
xref: FMA:14559
xref: GAID:320
xref: galen:GastricFundus
xref: HOG:0000421
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0001612
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0001161
name: body of stomach
alt_id: UBERON:FMA_14560-MA_0002559
def: "The body of stomach is the part of the stomach that lies between the fundus above and the pyloric antrum below; its boundaries are poorly defined[GO]." [GO:0014845, Wikipedia:Body_of_stomach]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "corpus gastricum (ventriculare)" EXACT []
synonym: "gastric body" EXACT []
synonym: "gastric corpus" RELATED []
synonym: "stomach body" EXACT []
xref: BTO:0000505
xref: FMA:14560
xref: galen:GastricCorpus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0002559
xref: ncithesaurus:Body_of_Stomach
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0001162
name: cardia of stomach
alt_id: UBERON:FMA_14561-MA_0001609
comment: This class was created automatically from a combination of ontologies
synonym: "cardial part of stomach" EXACT []
synonym: "gastric cardia" EXACT []
synonym: "pars cardiaca (gaster)" EXACT []
synonym: "stomach cardiac region" EXACT []
xref: FMA:14561
xref: MA:0001609
xref: ncithesaurus:Cardia
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0001163
name: lesser curvature of stomach
alt_id: UBERON:FMA_14572-MA_0001616
def: "The lesser curvature of the stomach, extending between the cardiac and pyloric orifices, forms the right or posterior border of the stomach. It descends as a continuation of the right margin of the esophagus in front of the fibers of the right crus of the diaphragm, and then, turning to the right, it crosses the first lumbar vertebra and ends at the pylorus. Nearer its pyloric than its cardiac end is a well-marked notch, the incisura angularis, which varies somewhat in position with the state of distension of the viscus; it serves to separate the stomach into a right and a left portion. The lesser curvature gives attachment to the two layers of the hepatogastric ligament, and between these two layers are the left gastric artery and the right gastric branch of the hepatic artery. [WP,unvetted]." [Wikipedia:Lesser_curvature_of_stomach]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "stomach lesser curvature" EXACT []
xref: FMA:14572
xref: galen:LesserCurvatureOfStomach
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0001616
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0001164
name: greater curvature of stomach
alt_id: UBERON:FMA_14574-MA_0001615
def: "The greater curvature of the stomach is directed mainly forward, and is four or five times as long as the lesser curvature. [WP,unvetted]." [Wikipedia:Greater_curvature_of_stomach]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "stomach greater curvature" EXACT []
xref: FMA:14574
xref: galen:GreaterCurvatureOfStomach
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0001615
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0001165
name: pyloric antrum
alt_id: UBERON:FMA_14579-MA_0001624
def: "Pyloric antrum (antrum, lesser cul-de-sac) is the initial portion of the pyloric part of the stomach. It is near the bottom of the stomach on the left side of the pyloric sphincter, which separates the stomach and the duodenum. It may temporarily become partially or completely shut off from the remainder of the stomach during digestion by peristaltic contraction of the prepyloric sphincter; it is demarcated, sometimes, from the second part of the pyloric part of the stomach by a slight groove. [WP,unvetted]." [Wikipedia:Pyloric_antrum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "antrum of stomach" EXACT []
synonym: "antrum of Willis" RELATED [BTO:0001732]
synonym: "gastric antrum" RELATED [BTO:0001732]
synonym: "stomach antrum" RELATED []
synonym: "stomach pyloric antrum" EXACT []
xref: BTO:0001732
xref: EFO:0002555
xref: EMAPA:17891
xref: EMAPA:18919
xref: FMA:14579
xref: GAID:332
xref: galen:PyloricAntrum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0001624
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001166 ! pylorus
[Term]
id: UBERON:0001166
name: pylorus
alt_id: UBERON:FMA_14581-MA_0002560
def: "The region of the stomach that connects to the duodenum. It is divided in two parts: the pyloric antrum, which connects to the body of the stomach. the pyloric canal, which connects to the duodenum. The pyloric sphincter, or valve, is a strong ring of smooth muscle at the end of the pyloric canal and lets food pass from the stomach to the duodenum. It receives sympathetic innervation from celiac ganglion. [WP,unvetted]." [Wikipedia:Pylorus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pyloric part of stomach" EXACT []
synonym: "pyloric region" EXACT []
synonym: "stomach pyloric region" EXACT []
xref: BTO:0001146
xref: EHDAA:4860
xref: EHDAA2:0001580
xref: EMAPA:17631
xref: EMAPA:18915
xref: FMA:14581
xref: GAID:333
xref: galen:Pylorus
xref: HOG:0000420
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1046.svg/200px-Gray1046.svg.png
xref: MA:0002560
xref: ncithesaurus:Pylorus
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0001167
name: wall of stomach
alt_id: UBERON:FMA_14582-MA_0002692
def: "An anatomical wall that is part of a stomach [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of stomach" EXACT [OBOL:automatic]
synonym: "anatomical wall of ventriculus" EXACT [OBOL:automatic]
synonym: "gastric wall" EXACT []
synonym: "stomach anatomical wall" EXACT [OBOL:automatic]
synonym: "stomach wall" EXACT []
synonym: "ventriculus anatomical wall" EXACT [OBOL:automatic]
synonym: "ventriculus wall" EXACT [OBOL:automatic]
synonym: "wall of ventriculus" EXACT [OBOL:automatic]
xref: FMA:14582
xref: galen:WallOfStomach
xref: MA:0002692
is_a: UBERON:0000060 ! anatomical wall
relationship: part_of UBERON:0000945
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0001168
name: wall of small intestine
alt_id: UBERON:FMA_14615-MA_0002696
def: "An anatomical wall that is part of a small intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of small bowel" EXACT [OBOL:automatic]
synonym: "anatomical wall of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel anatomical wall" EXACT [OBOL:automatic]
synonym: "small bowel wall" EXACT [OBOL:automatic]
synonym: "small intestinal wall" EXACT []
synonym: "small intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "small intestine wall" EXACT []
synonym: "wall of small bowel" EXACT [OBOL:automatic]
xref: FMA:14615
xref: MA:0002696
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0001262 ! implied link automatically realized ! wall of intestine
relationship: part_of UBERON:0002108
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0001169
name: wall of large intestine
alt_id: UBERON:FMA_14619-MA_0002695
def: "An anatomical wall that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of large intestine" EXACT [OBOL:automatic]
synonym: "large intestinal wall" EXACT []
synonym: "large intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "large intestine wall" EXACT []
xref: FMA:14619
xref: MA:0002695
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0001262 ! implied link automatically realized ! wall of intestine
relationship: part_of UBERON:0000059
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001262 ! wall of intestine
[Term]
id: UBERON:0001170
name: mesentery of small intestine
alt_id: UBERON:FMA_14643-MA_0001555
def: "A mesentery that is part of a small intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "mesentery of small bowel" EXACT [OBOL:automatic]
synonym: "mesentery proper" EXACT []
synonym: "small bowel mesentery" EXACT [OBOL:automatic]
synonym: "small intestinal mesentery" EXACT []
synonym: "small intestine mesentery" EXACT []
xref: FMA:14643
xref: MA:0001555
is_a: UBERON:0001206 ! implied link automatically realized ! serosa of small intestine
is_a: UBERON:0002095 ! mesentery
is_a: UBERON:0004854 ! implied link automatically realized ! gastrointestinal system mesentery
relationship: part_of UBERON:0002108
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001178 ! visceral peritoneum
[Term]
id: UBERON:0001171
name: portal lobule
alt_id: UBERON:FMA_14653-MA_0002498
def: "the triangular region on the periphery of the liver lobules that contain a bile duct and a terminal branch of the hepatic artery and portal vein, and may also include a lymphatic vessel." [MP:0008992]
comment: This class was created automatically from a combination of ontologies
xref: FMA:14653
xref: MA:0002498
xref: ncithesaurus:Portal_Lobule
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001280 ! liver parenchyma
[Term]
id: UBERON:0001172
name: hepatic acinus
alt_id: UBERON:FMA_14654-MA_0002496
comment: This class was created automatically from a combination of ontologies
synonym: "liver acinus" EXACT []
synonym: "portal acinus" EXACT []
xref: FMA:14654
xref: MA:0002496
xref: ncithesaurus:Liver_Acinus
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001171 ! portal lobule
[Term]
id: UBERON:0001173
name: biliary tree
alt_id: UBERON:FMA_14665-XAO_0000455
def: "Hollow tree organ, the organ parts of which consists of the bile ducts. Examples: There is only one biliary tree." [Wikipedia:Biliary_tract]
subset: uberon_slim
synonym: "biliary tract" EXACT []
xref: FMA:14665
xref: GAID:279
xref: MA:0001273
xref: ncithesaurus:Biliary_Tract
xref: XAO:0000455
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0005057 ! implied link automatically realized ! immune organ
is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ
relationship: develops_from UBERON:0004912 ! biliary bud
relationship: part_of UBERON:0002107 ! liver
relationship: part_of UBERON:0002294 ! biliary system
[Term]
id: UBERON:0001174
name: common bile duct
alt_id: UBERON:FMA_14667-MA_0001631
def: "a tube-like anatomic structure in the human gastrointestinal tract. It is formed by the union of the common hepatic duct and the cystic duct (from the gall bladder). It is later joined by the pancreatic duct to form the ampulla of Vater. There, the two ducts are surrounded by the muscular sphincter of Oddi." [Wikipedia:Common_bile_duct]
subset: uberon_slim
synonym: "ductus choledochus (biliaris)" EXACT []
xref: EHDAA:3981
xref: EHDAA2:0000303
xref: FMA:14667
xref: GAID:282
xref: galen:CommonBileDuct
xref: HOG:0000214
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png
xref: MA:0001631
xref: ncithesaurus:Common_Bile_Duct
xref: ZFA:0005165
is_a: UBERON:0002394 ! bile duct
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001173 ! biliary tree
[Term]
id: UBERON:0001175
name: common hepatic duct
alt_id: UBERON:FMA_14668-ZFA_0001100
def: "Predominantly extrahepatic bile duct which is formed by the junction of the right and left hepatic ducts, which are predominantly intrahepatic, and, in turn, joins the cystic duct to form the common bile duct[GAID]. The common hepatic duct is the duct formed by the convergence of the right hepatic duct (which drains bile from the right functional lobe of the liver) and the left hepatic duct (which drains bile from the left functional lobe of the liver). The common hepatic duct then joins the cystic duct coming from the gallbladder to form the common bile duct[WP]." [Wikipedia:Common_hepatic_duct, ZFIN:curator]
comment: TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same. Common is part of extra-hepatic part
subset: uberon_slim
synonym: "hepatic duct" RELATED []
xref: FMA:14668
xref: GAID:286
xref: HOG:0000220
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Illu_liver_gallbladder.jpg/200px-Illu_liver_gallbladder.jpg
xref: MA:0002660
xref: ncithesaurus:Common_Hepatic_Duct
is_a: UBERON:0002394 ! bile duct
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0001176
name: right hepatic duct
alt_id: UBERON:FMA_14669-MA_0001639
comment: This class was created automatically from a combination of ontologies
xref: EHDAA:3992
xref: EHDAA2:0001727
xref: FMA:14669
xref: HOG:0000217
xref: MA:0001639
xref: ncithesaurus:Right_Hepatic_Duct
is_a: UBERON:0002394 ! bile duct
[Term]
id: UBERON:0001177
name: left hepatic duct
alt_id: UBERON:FMA_14670-MA_0001638
comment: This class was created automatically from a combination of ontologies
xref: EHDAA:3990
xref: EHDAA2:0000941
xref: FMA:14670
xref: HOG:0000218
xref: MA:0001638
xref: ncithesaurus:Left_Hepatic_Duct
is_a: UBERON:0002394 ! bile duct
[Term]
id: UBERON:0001178
name: visceral peritoneum
alt_id: UBERON:FMA_14703-ZFA_0005132
def: "The peritoneum that covers the external surfaces of most abdominal organs." [Wikipedia:Visceral_peritoneum, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:14703
xref: HOG:0001528
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1040.png/200px-Gray1040.png
xref: TAO:0005132
xref: ZFA:0005132
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002358 ! peritoneum
[Term]
id: UBERON:0001179
name: peritoneal cavity
alt_id: UBERON:FMA_14704-MA_0000054
def: "Cavity of serous sac surrounded by the peritoneum." [Wikipedia:Peritoneal_cavity]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001782
xref: EHDAA2:0001446
xref: FMA:14704
xref: GAID:24
xref: HOG:0000852
xref: MA:0000054
xref: ncithesaurus:Peritoneal_Cavity
is_a: UBERON:0002323 ! body cavity
relationship: surrounded_by UBERON:0002358 ! peritoneum
[Term]
id: UBERON:0001180
name: superior recess of lesser sac
alt_id: UBERON:FMA_14708-MA_0000447
comment: This class was created automatically from a combination of ontologies
synonym: "omental bursa superior recess" EXACT []
synonym: "recessus superior omentalis" EXACT []
synonym: "superior omental bursa" EXACT []
synonym: "superior recess of omental bursa" EXACT []
xref: FMA:14708
xref: MA:0000447
is_a: UBERON:0002553 ! anatomical cavity
is_a: UBERON:0005252 ! implied link automatically realized ! omental bursa cavity
relationship: part_of UBERON:0001341 ! lesser sac
[Term]
id: UBERON:0001181
name: inferior recess of lesser sac
alt_id: UBERON:FMA_14709-MA_0000446
comment: This class was created automatically from a combination of ontologies
synonym: "inferior omental bursa" EXACT []
synonym: "inferior recess of omental bursa" EXACT []
synonym: "omental bursa inferior recess" EXACT []
synonym: "recessus inferior omentalis" EXACT []
xref: FMA:14709
xref: MA:0000446
is_a: UBERON:0002553 ! anatomical cavity
is_a: UBERON:0005252 ! implied link automatically realized ! omental bursa cavity
relationship: part_of UBERON:0001341 ! lesser sac
[Term]
id: UBERON:0001182
name: superior mesenteric artery
alt_id: UBERON:FMA_14749-MA_0002005
def: "In human anatomy, the superior mesenteric artery (SMA) arises from the anterior surface of the abdominal aorta, just inferior to the origin of the celiac trunk, and supplies the intestine from the lower part of the duodenum through two-thirds of the transverse colon, as well as the pancreas. [WP,unvetted]." [Wikipedia:Superior_mesenteric_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "superior mesenteric arterial tree" EXACT []
xref: BTO:0002303
xref: EHDAA:3358
xref: EHDAA:5313
xref: EHDAA2:0001949
xref: FMA:14749
xref: GAID:502
xref: galen:SuperiorMesentericArtery
xref: HOG:0000754
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Gray1099.png/200px-Gray1099.png
xref: MA:0002005
xref: ncithesaurus:Superior_Mesenteric_Artery
xref: OpenCyc:Mx4rwE5KipwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001183
name: inferior mesenteric artery
alt_id: UBERON:FMA_14750-MA_0002004
def: "In human anatomy, the inferior mesenteric artery, often abbreviated as IMA, supplies the large intestine from the left colic (or splenic) flexure to the upper part of the rectum, which includes the descending colon, the sigmoid colon, and part of the rectum. Proximally, its territory of distribution overlaps (forms a watershed) with the middle colic artery, and therefore the superior mesenteric artery. The SMA and IMA anastomose via the marginal artery (artery of Drummond). The territory of distribution of the IMA is more or less equivalent to the embryonic hindgut. [WP,unvetted]." [Wikipedia:Inferior_mesenteric_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "inferior mesenteric arterial tree" EXACT []
xref: BTO:0002302
xref: EHDAA:4345
xref: EHDAA2:0000817
xref: FMA:14750
xref: GAID:501
xref: galen:InferiorMesentericArtery
xref: HOG:0001116
xref: MA:0002004
xref: ncithesaurus:Inferior_Mesenteric_Artery
xref: OpenCyc:Mx4rv-t-S5wpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001184
name: renal artery
alt_id: UBERON:FMA_14751-MA_0002035-ZFA_0000420
def: "The renal arteries normally arise off the side of the abdominal aorta, immediately below the superior mesenteric artery, and supply the kidneys with blood. Each is directed across the crus of the diaphragm, so as to form nearly a right angle with the aorta. The renal arteries carry a large portion of total blood flow to the kidneys. Up to a third of total cardiac output can pass through the renal arteries to be filtered by the kidneys. The arterial supply of the kidneys is variable and there may be one or more renal arteries supplying each kidney. It is located above the renal vein. It has a radius of approximately 0.25cm, 0.26 cm at the root. The measured mean diameter can differ depending on the imaging method used. For example, the diameter was found to be 5.04 ± 0.74 mm using ultrasound, but 5.68 ± 1.19 mm using angiography. [WP,unvetted]." [Wikipedia:Renal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "renal arterial tree" EXACT []
synonym: "renal arteries" RELATED []
xref: BTO:0001165
xref: EFO:0002552
xref: EHDAA:5321
xref: EHDAA:8594
xref: EHDAA2:0001600
xref: FMA:14751
xref: GAID:507
xref: galen:RenalArtery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray1120.png/200px-Gray1120.png
xref: MA:0002035
xref: ncithesaurus:Renal_Artery
xref: OpenCyc:Mx4rveOFHpwpEbGdrcN5Y29ycA
xref: TAO:0000420
xref: ZFA:0000420
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003517 ! implied link automatically realized ! kidney blood vessel
relationship: part_of UBERON:0002113
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001185
name: right renal artery
alt_id: UBERON:FMA_14752-MA_0002037
def: "The renal arteries normally arise off the side of the abdominal aorta, immediately below the superior mesenteric artery, and supply the kidneys with blood. Each is directed across the crus of the diaphragm, so as to form nearly a right angle with the aorta. The renal arteries carry a large portion of total blood flow to the kidneys. Up to a third of total cardiac output can pass through the renal arteries to be filtered by the kidneys. The arterial supply of the kidneys is variable and there may be one or more renal arteries supplying each kidney. It is located above the renal vein. It has a radius of approximately 0.25cm, 0.26 cm at the root. The measured mean diameter can differ depending on the imaging method used. For example, the diameter was found to be 5.04 ± 0.74 mm using ultrasound, but 5.68 ± 1.19 mm using angiography. [WP,unvetted]." [Wikipedia:Right_renal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "right renal arterial tree" EXACT []
xref: FMA:14752
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray1120.png/200px-Gray1120.png
xref: MA:0002037
xref: ncithesaurus:Right_Renal_Artery
xref: OpenCyc:Mx4rtW8I0KgEEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rveOFHpwpEbGdrcN5Y29ycA
is_a: UBERON:0001184 ! renal artery
[Term]
id: UBERON:0001186
name: left renal artery
alt_id: UBERON:FMA_14753-MA_0002036
comment: This class was created automatically from a combination of ontologies
synonym: "left renal arterial tree" EXACT []
xref: FMA:14753
xref: MA:0002036
xref: ncithesaurus:Left_Renal_Artery
xref: OpenCyc:Mx4rtW8I0agEEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rveOFHpwpEbGdrcN5Y29ycA
is_a: UBERON:0001184 ! renal artery
[Term]
id: UBERON:0001187
name: testicular artery
alt_id: UBERON:FMA_14758-MA_0002063
def: "The testicular artery (the male gonadal artery, also called the internal spermatic arteries in older texts) is a branch of the abdominal aorta that supplies blood to the testis. It is a paired artery, with one for each of the testes. It is the male equivalent of the ovarian artery. Because the testis is found in a different location than that of its female equivalent, it has a different course than the ovarian artery. They are two slender vessels of considerable length, and arise from the front of the aorta a little below the renal arteries. Each passes obliquely downward and lateralward behind the peritoneum, resting on the Psoas major, the right spermatic lying in front of the inferior vena cava and behind the middle colic and ileocolic arteries and the terminal part of the ileum, the left behind the left colic and sigmoid arteries and the iliac colon. Each crosses obliquely over the ureter and the lower part of the external iliac artery to reach the abdominal inguinal ring, through which it passes, and accompanies the other constituents of the spermatic cord along the inguinal canal to the scrotum, where it becomes tortuous, and divides into several branches. Two or three of these accompany the ductus deferens, and supply the epididymis, anastomosing with the artery of the ductus deferens; others pierce the back part of the tunica albuginea, and supply the substance of the testis. The internal spermatic artery supplies one or two small branches to the ureter, and in the inguinal canal gives one or two twigs to the Cremaster. [WP,unvetted]." [Wikipedia:Testicular_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "testicular arterial tree" EXACT []
xref: FMA:14758
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray531.png/200px-Gray531.png
xref: MA:0002063
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001188
name: right testicular artery
alt_id: UBERON:FMA_14759-MA_0002042
comment: This class was created automatically from a combination of ontologies
synonym: "right spermatic artery" EXACT []
synonym: "trunk of right testicular arterial tree" EXACT []
xref: FMA:14759
xref: MA:0002042
xref: ncithesaurus:Right_Spermatic_Artery
is_a: UBERON:0001187 ! implied link automatically realized ! testicular artery
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0004534
intersection_of: UBERON:0001187 ! testicular artery
intersection_of: part_of UBERON:0004534 ! right testicle
[Term]
id: UBERON:0001189
name: left testicular artery
alt_id: UBERON:FMA_14760-MA_0002041
comment: This class was created automatically from a combination of ontologies
synonym: "left spermatic artery" EXACT []
synonym: "trunk of left testicular arterial tree" EXACT []
xref: FMA:14760
xref: MA:0002041
xref: ncithesaurus:Left_Spermatic_Artery
is_a: UBERON:0001187 ! implied link automatically realized ! testicular artery
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0004533
intersection_of: UBERON:0001187 ! testicular artery
intersection_of: part_of UBERON:0004533 ! left testicle
[Term]
id: UBERON:0001190
name: ovarian artery
alt_id: UBERON:FMA_14761-MA_0002012
def: "In human anatomy, the ovarian artery is a blood vessel that supplies oxygenated blood to the ovary. It arises from the abdominal aorta below the renal artery, and does not pass out of the abdominal cavity. It can be found in the suspensory ligament of the ovary. [WP,unvetted]." [Wikipedia:Ovarian_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ovarian arterial tree" EXACT []
xref: FMA:14761
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Gray1170.png/200px-Gray1170.png
xref: MA:0002012
xref: ncithesaurus:Ovarian_Artery
xref: OpenCyc:Mx4rwOa9PZwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
relationship: overlaps UBERON:0000992 ! ovary
[Term]
id: UBERON:0001191
name: common iliac artery
alt_id: UBERON:FMA_14764-MA_0001972
def: "The common iliac arteries are two large arteries, about 4cm long in adults but more than a centimetre in diameter, that originate from the aortic bifurcation. The arteries run inferolaterally, along the medial border of the psoas muscles to the pelvic brim, where they bifurcate into the external iliac artery and internal iliac artery. The common iliac artery, and all of its branches, exist as paired structures (that is to say, there is one on the left side and one on the right). The distribution of the common iliac artery is basically the pelvis and lower limb on the corresponding side. Both common iliac arteries are accompanied along their course by common iliac veins. [WP,unvetted]." [Wikipedia:Common_iliac_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "common iliac arterial tree" EXACT []
xref: EHDAA2:0000311
xref: FMA:14764
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Iliac_artery_bifurcation_and_aorta.PNG/200px-Iliac_artery_bifurcation_and_aorta.PNG
xref: MA:0001972
xref: ncithesaurus:Common_Iliac_Artery
xref: OpenCyc:Mx4rvkZ7ZpwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001192
name: left gastric artery
alt_id: UBERON:FMA_14768-MA_0001961
def: "In human anatomy, the left gastric artery arises from the celiac artery, and runs along the superior portion of the lesser curvature of the stomach. Branches also supply the lower esophagus. The left gastric artery anastomoses with the right gastric artery, which supplies the inferior portion. [WP,unvetted]." [Wikipedia:Left_gastric_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gastric artery" EXACT []
xref: FMA:14768
xref: galen:LeftGastricArtery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray532.png/200px-Gray532.png
xref: MA:0001961
xref: ncithesaurus:Gastric_Artery
xref: OpenCyc:Mx4rwMjqKZwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0001640 ! celiac artery
[Term]
id: UBERON:0001193
name: hepatic artery
alt_id: UBERON:FMA_14769-MA_0001963
def: "." [Wikipedia:Hepatic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:14769
xref: GAID:496
xref: galen:HepaticArtery
xref: MA:0001963
xref: ncithesaurus:Hepatic_Artery
xref: OpenCyc:Mx4rvzKtFpwpEbGdrcN5Y29ycA
xref: ZFA:0005161
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel
relationship: part_of UBERON:0002107
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0002107 ! liver
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0001194
name: splenic artery
alt_id: UBERON:FMA_14773-MA_0001991
def: "In anatomy, the splenic artery (in the past called the lienal artery) is the blood vessel that supplies oxygenated blood to the spleen. It branches from the celiac artery, and follows a course superior to the pancreas. [WP,unvetted]." [Wikipedia:Splenic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lienal artery" EXACT []
xref: FMA:14773
xref: GAID:510
xref: galen:SplenicArtery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a2/Gray1188.png/200px-Gray1188.png
xref: MA:0001991
xref: ncithesaurus:Splenic_Artery
xref: OpenCyc:Mx4rv0cb2ZwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0001640 ! celiac artery
[Term]
id: UBERON:0001195
name: inferior pancreaticoduodenal artery
alt_id: UBERON:FMA_14805-MA_0002014
def: "The inferior pancreaticoduodenal artery is a branch of the superior mesenteric artery or from its first intestinal branch, opposite the upper border of the inferior part of the duodenum. It courses to the right between the head of the pancreas and duodenum, and then ascends to anastomose with the anterior and posterior superior pancreaticoduodenal artery. It distributes branches to the head of the pancreas and to the descending and inferior parts of the duodenum. [WP,unvetted]." [Wikipedia:Inferior_pancreaticoduodenal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "inferior pancreatico-duodenal artery" EXACT []
xref: FMA:14805
xref: MA:0002014
xref: ncithesaurus:Inferior_Pancreatico-duodenal_artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001196
name: middle colic artery
alt_id: UBERON:FMA_14810-MA_0002007
def: "The middle colic artery is a branch of the superior mesenteric artery that mostly supplies the transverse colon. It arises just below the pancreas, and, passing downward and forward between the layers of the transverse mesocolon, divides into two branches: right and left. The right branch anastomoses with the right colic artery The left branch anastomoses with the left colic artery, a branch of the inferior mesenteric artery. The arches thus formed are placed about two fingers’ breadth from the transverse colon, to which they distribute branches. [WP,unvetted]." [Wikipedia:Middle_colic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:14810
xref: galen:MiddleColicArtery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Gray537.png/200px-Gray537.png
xref: MA:0002007
xref: ncithesaurus:Middle_Colic_Artery
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0001182 ! superior mesenteric artery
[Term]
id: UBERON:0001197
name: ileocolic artery
alt_id: UBERON:FMA_14815-MA_0001970
def: "The Ileocolic Artery is the lowest branch arising from the concavity of the superior mesenteric artery. It passes downward and to the right behind the peritoneum toward the right iliac fossa, where it divides into a superior and an inferior branch; the inferior anastomoses with the end of the superior mesenteric artery, the superior with the right colic artery. Supplies the cecum, ileum, and appendix. [WP,unvetted]." [Wikipedia:Ileocolic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:14815
xref: galen:IleocolicArtery
xref: MA:0001970
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0001182 ! superior mesenteric artery
[Term]
id: UBERON:0001198
name: superior suprarenal artery
alt_id: UBERON:FMA_14863-MA_0002057
def: "Each (left and right) superior suprarenal artery is a branch of the inferior phrenic artery on that side of the body. The left and right phrenic arteries supply the diaphragm, and come off the aorta. [WP,unvetted]." [Wikipedia:Superior_suprarenal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "superior adrenal branch of inferior phrenic artery" EXACT []
synonym: "superior suprarenal branch of inferior phrenic artery" EXACT []
xref: FMA:14863
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray1121.png/200px-Gray1121.png
xref: MA:0002057
xref: ncithesaurus:Superior_Suprarenal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001199
name: mucosa of stomach
alt_id: UBERON:FMA_14907-MA_0002683
def: "The gastric mucosa is the mucous membrane layer of the stomach which contains the glands and the gastric pits. In men it is about 1 mm thick and its surface is smooth, soft, and velvety. It consists of epithelium, lamina propria, and the muscularis mucosae. In its fresh state, it is of a pinkish tinge at the pyloric end and of a red or reddish-brown color over the rest of its surface. In infancy it is of a brighter hue, the vascular redness being more marked. It is thin at the cardiac extremity, but thicker toward the pylorus. During the contracted state of the organ it is thrown into numerous plaits or rugae, which, for the most part, have a longitudinal direction, and are most marked toward the pyloric end of the stomach, and along the greater curvature. These folds are entirely obliterated when the organ becomes distended. When examined with a lens, the inner surface of the mucous membrane presents a peculiar honeycomb appearance from being covered with funnel-like depressions or foveolae of a polygonal or hexagonal form, which vary from 0.12 to 0.25 mm. in diameter. These are the ducts of the gastric glands, and at the bottom of each may be seen one or more minute orifices, the openings of the gland tubes. Gastric glands are simple or branched tubular glands that emerge on the deeper part of the gastric foveola, inside the gastric areas and outlined by the folds of the mucosa. There are three types of glands: cardiac glands (in the proximal part of the stomach), oxyntic glands (the dominating type of gland), and pyloric glands. The cardiac glands mainly contain mucus producing cells. The bottom part of the oxyntic glands is dominated by zymogen (chief) cells that produce pepsinogen (an inactive precursor of the pepsin enzyme). Parietal cells, which secrete hydrochloric acid are scattered in the glands, with most of them in the middle part. The upper part of the glands consist of mucous neck cells; in this part the dividing cells are seen. The pyloric glands contain mucus-secreting cells. Several types of endocrine cells are found in all regions of the gastric mucosa. In the pyloric glands contain gastrin producing cells (G cells); this hormone stimulates acid production from the parietal cells. ECL (enterochromaffine-like) cells, found in the oxyntic glands release histamine, which also is a powerful stimulant of the acid secretion. The A cells produce glucagon, which mobilizes the hepatic glycogen, and the enterochromaffin cells that produce serotonin, which stimulates the contraction of the smooth muscles. The surface of the mucous membrane is covered by a single layer of columnar epithelium . This epithelium commences very abruptly at the cardiac orifice, where there is a sudden transition from the stratified epithelium of the esophagus. The epithelial lining of the gland ducts is of the same character and is continuous with the general epithelial lining of the stomach. [WP,unvetted]." [Wikipedia:Gastric_mucosa]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gastric mucosa" EXACT []
synonym: "gastric mucous membrane" EXACT []
synonym: "mucosa of organ of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ventriculus" EXACT [OBOL:automatic]
synonym: "mucosa of ventriculus" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach" EXACT []
synonym: "mucous membrane of ventriculus" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of ventriculus" EXACT [OBOL:automatic]
synonym: "stomach mucosa" EXACT []
synonym: "stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa (gaster)" EXACT []
synonym: "ventriculus mucosa" EXACT [OBOL:automatic]
synonym: "ventriculus mucosa of organ" EXACT [OBOL:automatic]
synonym: "ventriculus mucous membrane" EXACT [OBOL:automatic]
synonym: "ventriculus organ mucosa" EXACT [OBOL:automatic]
xref: BTO:0001308
xref: FMA:14907
xref: GAID:321
xref: galen:GastricMucosa
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Illu_stomach2.jpg/200px-Illu_stomach2.jpg
xref: MA:0002683
xref: ncithesaurus:Gastric_Mucosa
xref: OpenCyc:Mx8NhB4rvcD6KJwpEbGdrcN5Y29ycB4rvmKNOpwpEbGdrcN5Y29ycB4rvVj5FpwpEbGdrcN5Y29ycB4rvVjlqpwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004786 ! implied link automatically realized ! gastrointestinal system mucosa
relationship: part_of UBERON:0000945
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0001167 ! wall of stomach
[Term]
id: UBERON:0001200
name: submucosa of stomach
alt_id: UBERON:FMA_14908-MA_0002685
def: "A submucosa that is part of a stomach [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "gastric submucosa" EXACT []
synonym: "stomach submucosa" EXACT []
synonym: "submucosa of ventriculus" EXACT [OBOL:automatic]
synonym: "tela submucosa (gaster)" EXACT []
synonym: "ventriculus submucosa" EXACT [OBOL:automatic]
xref: FMA:14908
xref: MA:0002685
xref: ncithesaurus:Gastric_Submucosa
is_a: UBERON:0000009 ! submucosa
relationship: part_of UBERON:0000945
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0001167 ! wall of stomach
[Term]
id: UBERON:0001201
name: serosa of stomach
alt_id: UBERON:FMA_14914-MA_0001626
def: "A serous membrane that is part of a wall of stomach [Obol]." [OBOL:automatic]
comment: TODO - check serosa/peritoneum
synonym: "anatomical wall of stomach serosa" EXACT [OBOL:automatic]
synonym: "anatomical wall of stomach serous membrane" EXACT [OBOL:automatic]
synonym: "anatomical wall of ventriculus serosa" EXACT [OBOL:automatic]
synonym: "anatomical wall of ventriculus serous membrane" EXACT [OBOL:automatic]
synonym: "gastric serosa" RELATED []
synonym: "gastric wall serosa" EXACT [OBOL:automatic]
synonym: "gastric wall serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of anatomical wall of stomach" EXACT [OBOL:automatic]
synonym: "serosa of anatomical wall of ventriculus" EXACT [OBOL:automatic]
synonym: "serosa of gastric wall" EXACT [OBOL:automatic]
synonym: "serosa of stomach anatomical wall" EXACT [OBOL:automatic]
synonym: "serosa of stomach wall" EXACT [OBOL:automatic]
synonym: "serosa of ventriculus anatomical wall" EXACT [OBOL:automatic]
synonym: "serosa of ventriculus wall" EXACT [OBOL:automatic]
synonym: "serosa of wall of stomach" EXACT [OBOL:automatic]
synonym: "serosa of wall of ventriculus" EXACT [OBOL:automatic]
synonym: "serous coat of stomach" EXACT []
synonym: "serous membrane of anatomical wall of stomach" EXACT [OBOL:automatic]
synonym: "serous membrane of anatomical wall of ventriculus" EXACT [OBOL:automatic]
synonym: "serous membrane of gastric wall" EXACT [OBOL:automatic]
synonym: "serous membrane of stomach anatomical wall" EXACT [OBOL:automatic]
synonym: "serous membrane of stomach wall" EXACT [OBOL:automatic]
synonym: "serous membrane of ventriculus anatomical wall" EXACT [OBOL:automatic]
synonym: "serous membrane of ventriculus wall" EXACT [OBOL:automatic]
synonym: "serous membrane of wall of stomach" EXACT [OBOL:automatic]
synonym: "serous membrane of wall of ventriculus" EXACT [OBOL:automatic]
synonym: "stomach anatomical wall serosa" EXACT [OBOL:automatic]
synonym: "stomach anatomical wall serous membrane" EXACT [OBOL:automatic]
synonym: "stomach serosa" EXACT []
synonym: "stomach wall serosa" EXACT [OBOL:automatic]
synonym: "stomach wall serous membrane" EXACT [OBOL:automatic]
synonym: "tunica serosa (gaster)" EXACT []
synonym: "ventriculus anatomical wall serosa" EXACT [OBOL:automatic]
synonym: "ventriculus anatomical wall serous membrane" EXACT [OBOL:automatic]
synonym: "ventriculus wall serosa" EXACT [OBOL:automatic]
synonym: "ventriculus wall serous membrane" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of stomach" EXACT []
synonym: "wall of stomach serosa" EXACT [OBOL:automatic]
synonym: "wall of stomach serous membrane" EXACT [OBOL:automatic]
synonym: "wall of ventriculus serosa" EXACT [OBOL:automatic]
synonym: "wall of ventriculus serous membrane" EXACT [OBOL:automatic]
xref: FMA:14914
xref: MA:0001626
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0004782 ! implied link automatically realized ! gastrointestinal system serosa
relationship: part_of UBERON:0001167
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001167 ! wall of stomach
relationship: part_of UBERON:0001167 ! wall of stomach
[Term]
id: UBERON:0001202
name: pyloric sphincter
alt_id: UBERON:FMA_14916-XAO_0000457
def: "Sphincter muscle that is part of the pyloric region of the stomach." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pyloric valve" EXACT [[Wikipedia:Pylorus]
xref: EMAPA:19251
xref: FMA:14916
xref: HOG:0001466
xref: MA:0002952
xref: ncithesaurus:Pyloric_Sphincter
xref: OpenCyc:Mx4rvly2ZZwpEbGdrcN5Y29ycA
xref: XAO:0000457
is_a: UBERON:0004590 ! implied link automatically realized ! sphincter muscle
relationship: part_of UBERON:0001166
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0001166 ! pylorus
[Term]
id: UBERON:0001203
name: muscularis mucosae of stomach
alt_id: UBERON:FMA_14924-MA_0002684
comment: This class was created automatically from a combination of ontologies
synonym: "lamina muscularis mucosae (tunica mucosa)(gaster)" EXACT []
synonym: "lamina muscularis of gastric mucosa" EXACT []
synonym: "muscular coat of stomach" EXACT []
synonym: "stomach muscularis mucosa" EXACT []
xref: FMA:14924
xref: MA:0002684
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0004222 ! implied link automatically realized ! stomach smooth muscle
relationship: part_of UBERON:0001199 ! mucosa of stomach
[Term]
id: UBERON:0001204
name: mucosa of small intestine
alt_id: UBERON:FMA_14933-MA_0002686
def: "A mucosa that is part of a small intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "mucosa of organ of small bowel" EXACT [OBOL:automatic]
synonym: "mucosa of organ of small intestine" EXACT [OBOL:automatic]
synonym: "mucosa of small bowel" EXACT [OBOL:automatic]
synonym: "mucous membrane of small bowel" EXACT [OBOL:automatic]
synonym: "mucous membrane of small intestine" EXACT []
synonym: "organ mucosa of small bowel" EXACT [OBOL:automatic]
synonym: "organ mucosa of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel mucosa" EXACT [OBOL:automatic]
synonym: "small bowel mucosa of organ" EXACT [OBOL:automatic]
synonym: "small bowel mucous membrane" EXACT [OBOL:automatic]
synonym: "small bowel organ mucosa" EXACT [OBOL:automatic]
synonym: "small intestinal mucosa" EXACT []
synonym: "small intestine mucosa" EXACT []
synonym: "small intestine mucosa of organ" EXACT [OBOL:automatic]
synonym: "small intestine mucous membrane" EXACT []
synonym: "small intestine organ mucosa" EXACT [OBOL:automatic]
synonym: "tunica mucosa (intestinum tenue)" EXACT []
xref: BTO:0001259
xref: FMA:14933
xref: MA:0002686
xref: ncithesaurus:Small_Intestinal_Mucosa
is_a: UBERON:0001242 ! intestinal mucosa
relationship: part_of UBERON:0002108
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001168 ! wall of small intestine
relationship: part_of UBERON:0001242 ! intestinal mucosa
[Term]
id: UBERON:0001205
name: submucosa of small intestine
alt_id: UBERON:FMA_14934-MA_0001562
def: "." [Wikipedia:Small_intestinal_submucosa]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "small bowel submucosa" EXACT [OBOL:automatic]
synonym: "small intestinal submucosa" EXACT []
synonym: "small intestine submucosa" EXACT []
synonym: "submucosa of small bowel" EXACT [OBOL:automatic]
synonym: "tela submucosa (intestinum tenue)" EXACT []
xref: FMA:14934
xref: MA:0001562
xref: ncithesaurus:Small_Intestinal_Submucosa
is_a: UBERON:0000009 ! submucosa
relationship: part_of UBERON:0002108
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001168 ! wall of small intestine
[Term]
id: UBERON:0001206
name: serosa of small intestine
alt_id: UBERON:FMA_14938-MA_0001558
def: "A serous membrane that is part of a small intestine [Obol]." [OBOL:automatic]
comment: TODO - check serosa/peritoneum
synonym: "serosa of small bowel" EXACT [OBOL:automatic]
synonym: "serous coat of small intestine" EXACT []
synonym: "serous membrane of small bowel" EXACT [OBOL:automatic]
synonym: "serous membrane of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel serosa" EXACT [OBOL:automatic]
synonym: "small bowel serous membrane" EXACT [OBOL:automatic]
synonym: "small intestinal serosa" EXACT []
synonym: "small intestine serosa" EXACT []
synonym: "small intestine serous membrane" EXACT [OBOL:automatic]
synonym: "tunica serosa (intestinum tenue)" EXACT []
synonym: "visceral peritoneum of small intestine" EXACT []
xref: FMA:14938
xref: MA:0001558
is_a: UBERON:0001243 ! serosa of intestine
relationship: part_of UBERON:0002108
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001168 ! wall of small intestine
relationship: part_of UBERON:0001243 ! serosa of intestine
[Term]
id: UBERON:0001207
name: mucosa of large intestine
alt_id: UBERON:FMA_14969-MA_0002688
def: "A mucosa that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "large intestinal mucosa" EXACT []
synonym: "large intestine mucosa" EXACT []
synonym: "large intestine mucosa of organ" EXACT [OBOL:automatic]
synonym: "large intestine mucous membrane" EXACT [OBOL:automatic]
synonym: "large intestine organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of large intestine" EXACT [OBOL:automatic]
synonym: "mucous membrane of large intestine" EXACT []
synonym: "organ mucosa of large intestine" EXACT [OBOL:automatic]
xref: FMA:14969
xref: MA:0002688
xref: ncithesaurus:Large_Intestinal_Mucosa
is_a: UBERON:0001242 ! intestinal mucosa
relationship: part_of UBERON:0000059
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001169 ! wall of large intestine
relationship: part_of UBERON:0001242 ! intestinal mucosa
[Term]
id: UBERON:0001208
name: submucosa of large intestine
alt_id: UBERON:FMA_14970-MA_0002690
def: "A submucosa that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "large intestinal submucosa" EXACT []
synonym: "large intestine submucosa" EXACT []
xref: FMA:14970
xref: MA:0002690
xref: ncithesaurus:Large_Intestinal_Submucosa
is_a: UBERON:0000009 ! submucosa
relationship: part_of UBERON:0000059
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001169 ! wall of large intestine
[Term]
id: UBERON:0001209
name: serosa of large intestine
alt_id: UBERON:FMA_14975-MA_0001546
def: "A serous membrane that is part of a large intestine [Obol]." [OBOL:automatic]
comment: TODO - check serosa/peritoneum
synonym: "large intestinal serosa" EXACT []
synonym: "large intestine serosa" EXACT []
synonym: "large intestine serous membrane" EXACT [OBOL:automatic]
synonym: "serous coat of large intestine" EXACT []
synonym: "serous membrane of large intestine" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of large intestine" EXACT []
xref: FMA:14975
xref: MA:0001546
is_a: UBERON:0001243 ! serosa of intestine
relationship: part_of UBERON:0000059
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001169 ! wall of large intestine
relationship: part_of UBERON:0001243 ! serosa of intestine
[Term]
id: UBERON:0001210
name: muscularis mucosae of small intestine
alt_id: UBERON:FMA_15051-MA_0002687
comment: This class was created automatically from a combination of ontologies
synonym: "lamina muscularis mucosae (tunica mucosa)(intestinum tenue)" EXACT []
synonym: "lamina muscularis of small intestine mucous membrane" EXACT []
synonym: "small intestine muscularis mucosa" EXACT []
xref: FMA:15051
xref: MA:0002687
xref: ncithesaurus:Small_Intestinal_Muscularis_Mucosa
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0004239 ! implied link automatically realized ! small intestine smooth muscle
relationship: part_of UBERON:0001204 ! mucosa of small intestine
relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine
[Term]
id: UBERON:0001211
name: Peyer's patch
alt_id: UBERON:FMA_15054-MA_0000137
def: "aggregations of lymphoid tissue that are usually found in the lowest portion of the small intestine ileum in humans; as such, they differentiate the ileum from the duodenum and jejunum // nodular lymphoid structures on the serosal surface of the small intestine." [Wikipedia:Peyer's_patch]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EFO:0001381
xref: FMA:76466
xref: GAID:950
xref: MA:0000137
is_a: UBERON:0001962 ! gut-associated lymphoid tissue
[Term]
id: UBERON:0001212
name: duodenal gland
alt_id: UBERON:FMA_15060-MA_0001551
def: "." [Wikipedia:Brunner's_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Brunner's gland" EXACT []
synonym: "gland of Brunner" EXACT []
xref: BTO:0002376
xref: FMA:15060
xref: GAID:314
xref: MA:0001551
xref: ncithesaurus:Brunner_s_Gland
is_a: UBERON:0000333 ! implied link automatically realized ! intestinal gland
is_a: UBERON:0002365 ! implied link automatically realized ! exocrine gland
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0001242 ! intestinal mucosa
relationship: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0001213
name: intestinal villus
alt_id: UBERON:FMA_15072-ZFA_0005125
def: "The entire digestive tract is lined by well developed villi, which are longest in the intestinal bulb and decrease progressively in size towards the caudal end of the intestine. No crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips.Crosnier et al. 2005" [Wikipedia:Intestinal_villus, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "villus intestinalis (intestinum tenue)" EXACT []
xref: FMA:15072
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/38/Small_intestine_low_mag.jpg/200px-Small_intestine_low_mag.jpg
xref: TAO:0005125
xref: ZFA:0005125
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0001277 ! intestinal epithelium
[Term]
id: UBERON:0001214
name: pancreatic tributary of splenic vein
alt_id: UBERON:FMA_15388-MA_0002189
def: "The pancreatic veins consist of several small vessels which drain the body and tail of the pancreas, and open into the trunk of the great pancreatic vein. [WP,unvetted]." [Wikipedia:Pancreatic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pancreatic vein" EXACT []
xref: FMA:15388
xref: MA:0002189
xref: ncithesaurus:Pancreatic_Vein
is_a: UBERON:0002017 ! portal vein
[Term]
id: UBERON:0001215
name: inferior mesenteric vein
alt_id: UBERON:FMA_15391-MA_0002178
def: "In human anatomy, the inferior mesenteric vein (IMV) is a blood vessel that drains blood from the large intestine. It usually terminates when reaching the splenic vein, which goes on to form the portal vein with the superior mesenteric vein (SMV). Anatomical variations include the IMV draining into the confluence of the SMV and splenic vein and the IMV draining in the SMV. The IMV lies to the right of the similarly name artery, the inferior mesenteric artery, which originates from the abdominal aorta. [WP,unvetted]." [Wikipedia:Inferior_mesenteric_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0002782
xref: EHDAA:8712
xref: EHDAA2:0000819
xref: FMA:15391
xref: HOG:0001118
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png
xref: MA:0002178
xref: ncithesaurus:Inferior_Mesenteric_Vein
xref: OpenCyc:Mx4rvcV53ZwpEbGdrcN5Y29ycA
is_a: UBERON:0005617 ! mesenteric vein
[Term]
id: UBERON:0001216
name: jejunal vein
alt_id: UBERON:FMA_15402-MA_0002153
def: "The jejunal veins are tributaries of the superior mesenteric vein. [WP,unvetted]." [Wikipedia:Jejunal_veins]
comment: This class was created automatically from a combination of ontologies
xref: FMA:15402
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png
xref: MA:0002153
is_a: UBERON:0002017 ! portal vein
relationship: part_of UBERON:0001138 ! superior mesenteric vein
[Term]
id: UBERON:0001217
name: ileal vein
alt_id: UBERON:FMA_15405-MA_0002140
comment: This class was created automatically from a combination of ontologies
xref: FMA:15405
xref: MA:0002140
xref: ncithesaurus:Ileal_Vein
is_a: UBERON:0002017 ! portal vein
relationship: part_of UBERON:0001138 ! superior mesenteric vein
[Term]
id: UBERON:0001218
name: middle colic vein
alt_id: UBERON:FMA_15406-MA_0002181
def: "The middle colic vein drains the transverse colon. It is a tributary of the superior mesenteric vein, and follows the path of its corresponding artery, the middle colic artery. [WP,unvetted]." [Wikipedia:Middle_colic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vena colica media (intermedia)" EXACT []
xref: FMA:15406
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png
xref: MA:0002181
xref: OpenCyc:Mx4rvywYIpwpEbGdrcN5Y29ycA
is_a: UBERON:0002017 ! portal vein
relationship: part_of UBERON:0001138 ! superior mesenteric vein
[Term]
id: UBERON:0001219
name: ileocolic vein
alt_id: UBERON:FMA_15408-MA_0002141
def: "The ileocolic vein is a vein which drains the ileum, colon, and cecum. [WP,unvetted]." [Wikipedia:Ileocolic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:15408
xref: MA:0002141
xref: ncithesaurus:Ileocolic_Vein
is_a: UBERON:0002017 ! portal vein
relationship: part_of UBERON:0001138 ! superior mesenteric vein
[Term]
id: UBERON:0001220
name: quadratus lumborum
alt_id: UBERON:FMA_15569-MA_0002362
def: "The Quadratus lumborum is irregular and quadrilateral in shape, and broader below than above. [WP,unvetted]." [Wikipedia:Quadratus_lumborum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "muscle of posterior abdominal wall" EXACT []
xref: FMA:15569
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/de/Gray1124.png/200px-Gray1124.png
xref: MA:0002362
xref: ncithesaurus:Quadratus_Lumborum
xref: OpenCyc:Mx4rvj1wcpwpEbGdrcN5Y29ycA
is_a: UBERON:0002378 ! muscle of abdomen
[Term]
id: UBERON:0001221
name: transversus abdominis
alt_id: UBERON:FMA_15570-MA_0002396
def: "The transversus abdominis muscle, also known as the transversalis muscle and transverse abdominal muscle, is a muscle layer of the anterior and lateral abdominal wall which is just deep to (layered below) the internal oblique muscle. It is thought to be a major muscle of the functional core of the human body; although some argue that due to its small cross-sectional area, it cannot generate the forces required to be a prime core stabilizer. [WP,unvetted]." [Wikipedia:Transversus_abdominis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "transverse abdominal" EXACT []
xref: EHDAA:8254
xref: EHDAA2:0002078
xref: FMA:15570
xref: HOG:0000845
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_trunk_muscles.jpg/200px-Illu_trunk_muscles.jpg
xref: MA:0002396
xref: ncithesaurus:Transversus_Abdominis
is_a: UBERON:0002461 ! anterior abdominal wall muscle
[Term]
id: UBERON:0001222
name: right ureter
alt_id: UBERON:FMA_15571-MA_0001685
def: "A ureter that is part of a right side of organism [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
xref: FMA:15571
xref: MA:0001685
xref: ncithesaurus:Right_Ureter
is_a: UBERON:0000056 ! implied link automatically realized ! ureter
relationship: part_of UBERON:0004532
intersection_of: UBERON:0000056 ! ureter
intersection_of: part_of UBERON:0004532 ! right side of organism
[Term]
id: UBERON:0001223
name: left ureter
alt_id: UBERON:FMA_15572-MA_0001684
def: "A ureter that is part of a left side of organism [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
xref: FMA:15572
xref: MA:0001684
xref: ncithesaurus:Left_Ureter
is_a: UBERON:0000056 ! implied link automatically realized ! ureter
relationship: part_of UBERON:0004531
intersection_of: UBERON:0000056 ! ureter
intersection_of: part_of UBERON:0004531 ! left side of organism
[Term]
id: UBERON:0001224
name: renal pelvis
alt_id: UBERON:FMA_15575-MA_0000374
def: "funnel-like dilated proximal part of the ureter in the kidney." [Wikipedia:Renal_pelvis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "kidney pelvis" EXACT []
synonym: "pelvis of ureter" EXACT []
xref: FMA:15575
xref: GAID:426
xref: galen:RenalPelvis
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Illu_kidney2.jpg/200px-Illu_kidney2.jpg
xref: MA:0000374
xref: ncithesaurus:Renal_Pelvis
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001225
name: cortex of kidney
alt_id: UBERON:FMA_15581-MA_0000372
def: "Region of parenchyma of kidney representing the outer portion." [Wikipedia:Kidney_cortex]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "kidney cortex" EXACT []
synonym: "renal cortex" EXACT []
xref: BTO:0001166
xref: FMA:15581
xref: GAID:424
xref: galen:CortexOfKidney
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg
xref: MA:0000372
xref: ncithesaurus:Renal_Cortex
is_a: UBERON:0001851 ! cortex
relationship: part_of UBERON:0002113
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001226
name: major calyx
alt_id: UBERON:FMA_15613-MA_0001644
def: "The major calyx, in the kidney, surrounds the apex of the malpighian pyramids. Urine formed in the kidney passes through a papilla at the apex into a minor calyx then into major calyx before passing through the renal pelvis into the ureter. Peristalsis of the smooth muscle originating in pace-maker cells originating in the walls of the calyces propels urine through the pelvis and ureters to the bladder. [WP,unvetted]." [Wikipedia:Major_calyx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "major calix" EXACT []
xref: FMA:15613
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png
xref: MA:0001644
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001224 ! renal pelvis
[Term]
id: UBERON:0001227
name: minor calyx
alt_id: UBERON:FMA_15614-MA_0001645
def: "The minor calyx, in the kidney, surrounds the apex of the malpighian pyramids. Urine formed in the kidney passes through a papilla at the apex into the minor calyx then into the major calyx. Peristalsis of the smooth muscle originating in pace-maker cells originating in the walls of the calyces propels urine through the pelvis and ureters to the bladder. [WP,unvetted]." [Wikipedia:Minor_calyx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "minor calix" EXACT []
xref: FMA:15614
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png
xref: MA:0001645
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001224 ! renal pelvis
[Term]
id: UBERON:0001228
name: renal papilla
alt_id: UBERON:FMA_15622-MA_0002730
def: "In the kidney, the renal papilla is the location where the Medullary pyramids empty urine into the renal pelvis. Histologically it is marked by medullary collecting ducts converging to channel the fluid. Transitional epithelium begins to be seen. [WP,unvetted]." [Wikipedia:Renal_papilla]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003925
xref: FMA:15622
xref: galen:RenalPapilla
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png
xref: MA:0002730
xref: ncithesaurus:Renal_Papilla
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001224 ! renal pelvis
relationship: part_of UBERON:0001294 ! inner medulla of kidney
[Term]
id: UBERON:0001229
name: renal corpuscle
alt_id: UBERON:FMA_15625-MA_0000376
def: "In the kidney, a renal corpuscle is the initial blood-filtering component of a nephron. It consists of two structures: a glomerulus and a Bowman's capsule. The glomerulus is a small tuft of capillaries containing two cell types. Endothelial cells, which have large fenestrae, are not covered by diaphragms. Mesangial cells are modified smooth muscle cells that lie between the capillaries and the glomerulus. They regulate blood flow by their contractile activity and secrete extracellular matrix, prostaglandins, and cytokines. Mesangial cells also have phagocytic activity, removing proteins and other molecules trapped in the glomerular basement membrane or filtration barrier. The Bowman's capsule has an outer parietal layer composed of simple squamous epithelium. The visceral layer, composed of modified simple squamous epithelium, is lined by podocytes. Podocytes have foot processes, pedicels, that wrap around glomerular capillaries. These pedicels interdigitate with pedicels of adjacent podocytes forming filtration slits. The renal corpuscle filtration barrier is composed of: the fenestrated endothelium of glomerular capillaries, the fused basal lamina of endothelial cells and podocytes, and the filtration slits of the podocytes. This barrier permits passage of water, ions, and small molecules from the bloodstream into Bowman's space (the space between the visceral and parietal layers). Large and/or negatively charged proteins are prevented from passing into Bowman's space, thus retaining these proteins in the circulation. The basal lamina is composed of 3 layers: lamina rara externa, lamina densa, and lamina rara interna. The lamina rara externa is adjacent to the podocyte processes. The lamina densa is the central layer consisting of type IV collagen and laminin. This layer acts as a selective macromolecular filter, preventing the passage of large protein molecules into Bowman's space. The lamina rara intena is adjacent to endothelial cells. This layer contains heparan sulfate, a negatively charged glycosaminoglycan that contributes to the electrostatic barrier of the glomerular filter. There are two poles in the renal corpuscle, a vascular pole, and a urinary pole. The vascular pole is where the afferent and efferent arterioles communicate with the glomerulus. The urinary pole is where the corpuscle opens into the lumen of the proximal convoluted tubule. Fluid from blood in the glomerulus is collected in the Bowman's capsule to form 'glomerular filtrate', which is then further processed along the nephron to form urine. [WP,unvetted]." [Wikipedia:Renal_corpuscle]
comment: Together, the Bowmans capsule and the glomerulus comprise the definitive renal corpuscle. http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron
subset: uberon_slim
synonym: "corpusculum renale" EXACT []
synonym: "cortical renal corpuscle" RELATED []
synonym: "malphighian corpuscle" RELATED []
synonym: "malphigian corpuscle" EXACT []
xref: BTO:0000333
xref: FMA:15625
xref: HOG:0001262
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Renal_corpuscle.svg/200px-Renal_corpuscle.svg.png
xref: MA:0000376
xref: ncithesaurus:Renal_Corpuscle
xref: ZFA:0005281
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0001230
name: glomerular capsule
alt_id: UBERON:FMA_15626-MA_0001660
def: "The Bowman's capsule is a cup-like sac at the beginning of the tubular component of a nephron in the mammalian kidney. A glomerulus is enclosed in the sac. Fluids from blood in the glomerulus are collected in the Bowman's capsule and further processed along the nephron to form urine. This process is known as ultrafiltration. [WP,unvetted]." [Wikipedia:Glomerular_capsule]
comment: One fold of the S-shaped body gives rise to Bowman’s capsule[GUDMAP]
subset: uberon_slim
synonym: "Bowman's capsule" EXACT [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron]
xref: FMA:15626
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1130.svg/200px-Gray1130.svg.png
xref: MA:0001660
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0004199 ! S-shaped body
relationship: part_of UBERON:0001229 ! renal corpuscle
[Term]
id: UBERON:0001231
name: renal tubule
alt_id: UBERON:0004210
alt_id: UBERON:FMA_15627-ZFA_0001287
def: "An epithelial tube that is part of the nephron, the functional part of the kidney." [GO:0072078, Wikipedia:Renal_tubule]
subset: uberon_slim
synonym: "kidney tubule" EXACT [GAID:433]
synonym: "nephron tubule" EXACT [GO:0072078]
synonym: "tubulus renalis" EXACT []
xref: BTO:0000343
xref: FMA:15627
xref: GAID:433
xref: MA:0000377
xref: ncithesaurus:Renal_Tubule
xref: TAO:0001287
xref: ZFA:0001287
is_a: UBERON:0003914 ! implied link automatically realized ! epithelial tube
is_a: UBERON:0004810 ! implied link automatically realized ! renal tubule epithelium
relationship: part_of UBERON:0001285
intersection_of: UBERON:0003914 ! epithelial tube
intersection_of: part_of UBERON:0001285 ! nephron
relationship: develops_from UBERON:0003220 ! metanephric blastema
[Term]
id: UBERON:0001232
name: collecting duct of renal tubule
alt_id: UBERON:FMA_15628-MA_0000371
def: "The collecting duct is a portion of the nephron through which water flows, moving passively down its concentration gradient" [GO:0072044]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "collecting duct" EXACT [GO:0072044]
synonym: "collecting tubule" RELATED []
synonym: "kidney collecting duct" EXACT []
synonym: "renal collecting tubule" EXACT []
synonym: "tubulus renalis colligens" EXACT []
xref: BTO:0000761
xref: EMAPA:28407
xref: FMA:15628
xref: GAID:434
xref: MA:0000371
xref: ZFA:0005294
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0001233
name: right adrenal gland
alt_id: UBERON:FMA_15629-MA_0000719
comment: This class was created automatically from a combination of ontologies
synonym: "right suprarenal gland" EXACT []
xref: FMA:15629
xref: MA:0000719
xref: ncithesaurus:Right_Adrenal_Gland
is_a: UBERON:0002369 ! adrenal gland
[Term]
id: UBERON:0001234
name: left adrenal gland
alt_id: UBERON:FMA_15630-MA_0000718
comment: This class was created automatically from a combination of ontologies
synonym: "left suprarenal gland" EXACT []
xref: FMA:15630
xref: MA:0000718
xref: ncithesaurus:Left_Adrenal_Gland
is_a: UBERON:0002369 ! adrenal gland
[Term]
id: UBERON:0001235
name: adrenal cortex
alt_id: UBERON:FMA_15632-MA_0000118-XAO_0000165
def: "Situated along the perimeter of the adrenal gland, the adrenal cortex mediates the stress response through the production of mineralocorticoids and glucocorticoids, including aldosterone and cortisol respectively. It is also a secondary site of androgen synthesis. [WP,unvetted]." [Wikipedia:Adrenal_cortex]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adrenal gland cortex" EXACT []
synonym: "cortex (glandula suprarenalis)" EXACT []
synonym: "cortex of adrenal gland" EXACT []
synonym: "cortex of suprarenal gland" EXACT []
synonym: "interrenal tissue" RELATED []
synonym: "suprarenal cortex" EXACT []
xref: BTO:0000045
xref: EFO:0000237
xref: FMA:15632
xref: GAID:447
xref: HOG:0001481
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png
xref: MA:0000118
xref: MAT:0000494
xref: ncithesaurus:Adrenal_Cortex
xref: XAO:0000165
is_a: UBERON:0001851 ! cortex
relationship: part_of UBERON:0002369
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0002369 ! adrenal gland
relationship: part_of UBERON:0002369 ! adrenal gland
[Term]
id: UBERON:0001236
name: adrenal medulla
alt_id: UBERON:FMA_15633-MA_0000119-XAO_0000166
def: "The adrenal medulla is part of the adrenal gland. It is located at the center of the gland, being surrounded by the adrenal cortex. [WP,unvetted]." [Wikipedia:Adrenal_medulla]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adrenal gland medulla" EXACT []
synonym: "chromaffin cells" RELATED []
synonym: "medulla (glandula suprarenalis)" EXACT []
synonym: "medulla of adrenal gland" EXACT [OBOL:automatic]
synonym: "medulla of suprarenal gland" EXACT []
synonym: "suprarenal medulla" EXACT []
xref: BTO:0000049
xref: EFO:0000852
xref: FMA:15633
xref: GAID:451
xref: HOG:0001378
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png
xref: MA:0000119
xref: MAT:0000495
xref: ncithesaurus:Adrenal_Medulla
xref: XAO:0000166
is_a: UBERON:0000958 ! medulla
relationship: part_of UBERON:0002369
intersection_of: UBERON:0000958 ! medulla
intersection_of: part_of UBERON:0002369 ! adrenal gland
relationship: part_of UBERON:0002369 ! adrenal gland
[Term]
id: UBERON:0001237
name: paraaortic body
alt_id: UBERON:FMA_15647-MA_0001137
def: "." [Wikipedia:Organ_of_Zuckerkandl]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "organ of zuckerkandl" EXACT []
synonym: "para-aortic body" RELATED []
synonym: "paraganglia of zuckerkandl" RELATED []
xref: FMA:15647
xref: GAID:444
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray531.png/200px-Gray531.png
xref: MA:0001137
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0001238
name: lamina propria of small intestine
alt_id: UBERON:FMA_15651-MA_0001554
def: "Lamina propria that is part_of the small intestine." [GOC:Obol]
synonym: "lamina propria mucosa of small bowel" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of small intestine" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of small bowel" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of small intestine" EXACT []
synonym: "lamina propria of mucosa of small intestine" EXACT []
synonym: "lamina propria of small bowel" EXACT [OBOL:automatic]
synonym: "small bowel lamina propria" EXACT [OBOL:automatic]
synonym: "small bowel lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "small bowel lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "small intestine lamina propria" EXACT []
synonym: "small intestine lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "small intestine lamina propria mucosae" EXACT [OBOL:automatic]
xref: FMA:15651
xref: MA:0001554
xref: ncithesaurus:Small_Intestinal_Lamina_Propria
is_a: UBERON:0000030 ! lamina propria
is_a: UBERON:0004780 ! implied link automatically realized ! gastrointestinal system lamina propria
relationship: part_of UBERON:0002108
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001204 ! mucosa of small intestine
[Term]
id: UBERON:0001239
name: muscularis mucosae of large intestine
alt_id: UBERON:FMA_15655-MA_0002689
comment: This class was created automatically from a combination of ontologies
synonym: "lamina muscularis of large intestine mucosa" EXACT []
synonym: "lamina muscularis of large intestine mucous membrane" EXACT []
synonym: "large intestine muscularis mucosa" EXACT []
xref: FMA:15655
xref: MA:0002689
xref: ncithesaurus:Large_Intestinal_Muscularis_Mucosa
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0004220 ! implied link automatically realized ! large intestine smooth muscle
relationship: part_of UBERON:0001207 ! mucosa of large intestine
relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine
[Term]
id: UBERON:0001240
name: muscularis mucosae of intestine
alt_id: UBERON:FMA_15691-MA_0002694
comment: This class was created automatically from a combination of ontologies
synonym: "intestine muscularis mucosa" EXACT []
xref: FMA:15691
xref: MA:0002694
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001242 ! intestinal mucosa
[Term]
id: UBERON:0001241
name: crypt of Lieberkuhn of small intestine
alt_id: UBERON:FMA_15693-MA_0001552
def: "A crypt of lieberkuhn that is part of a small intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "crypt of lieberkuhn of small bowel" EXACT [OBOL:automatic]
synonym: "crypt of lieberkuhn of small intestine" EXACT [OBOL:automatic]
synonym: "intestinal gland of small bowel" EXACT [OBOL:automatic]
synonym: "intestinal gland of small intestine" EXACT [OBOL:automatic]
synonym: "lieberkuhn crypt of small bowel" EXACT [OBOL:automatic]
synonym: "lieberkuhn crypt of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel crypt of lieberkuhn" EXACT [OBOL:automatic]
synonym: "small bowel intestinal gland" EXACT [OBOL:automatic]
synonym: "small bowel lieberkuhn crypt" EXACT [OBOL:automatic]
synonym: "small intestinal crypt of Lieberkuhn" EXACT []
synonym: "small intestine crypt of Lieberkuhn" EXACT []
synonym: "small intestine crypt of lieberkuhn" EXACT [OBOL:automatic]
synonym: "small intestine intestinal gland" EXACT [OBOL:automatic]
synonym: "small intestine lieberkuhn crypt" EXACT [OBOL:automatic]
xref: FMA:15693
xref: MA:0001552
xref: ncithesaurus:Small_Intestinal_Crypt_of_Lieberkuhn
is_a: UBERON:0001983 ! crypt of lieberkuhn
relationship: part_of UBERON:0002108
intersection_of: UBERON:0001983 ! crypt of lieberkuhn
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0001242
name: intestinal mucosa
alt_id: UBERON:FMA_15695-MA_0001537
def: "." [Wikipedia:Intestinal_mucosa]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bowel mucosa" EXACT [OBOL:automatic]
synonym: "bowel mucosa of organ" EXACT [OBOL:automatic]
synonym: "bowel mucous membrane" EXACT [OBOL:automatic]
synonym: "bowel organ mucosa" EXACT [OBOL:automatic]
synonym: "intestine mucosa" EXACT []
synonym: "intestine mucosa of organ" EXACT [OBOL:automatic]
synonym: "intestine mucous membrane" EXACT [OBOL:automatic]
synonym: "intestine organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bowel" EXACT [OBOL:automatic]
synonym: "mucosa of intestine" EXACT []
synonym: "mucosa of organ of bowel" EXACT [OBOL:automatic]
synonym: "mucosa of organ of intestine" EXACT [OBOL:automatic]
synonym: "mucous membrane of bowel" EXACT [OBOL:automatic]
synonym: "mucous membrane of intestine" EXACT [OBOL:automatic]
synonym: "organ mucosa of bowel" EXACT [OBOL:automatic]
synonym: "organ mucosa of intestine" EXACT [OBOL:automatic]
xref: BTO:0000642
xref: FMA:15695
xref: GAID:296
xref: MA:0001537
xref: ncithesaurus:Intestinal_Mucosa
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004786 ! implied link automatically realized ! gastrointestinal system mucosa
relationship: part_of UBERON:0000160
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001262 ! wall of intestine
[Term]
id: UBERON:0001243
name: serosa of intestine
alt_id: UBERON:FMA_15701-MA_0001538
def: "A serous membrane that is part of a wall of intestine [Obol]." [OBOL:automatic]
comment: TODO - check serosa/peritoneum
synonym: "anatomical wall of bowel serosa" EXACT [OBOL:automatic]
synonym: "anatomical wall of bowel serous membrane" EXACT [OBOL:automatic]
synonym: "anatomical wall of intestine serosa" EXACT [OBOL:automatic]
synonym: "anatomical wall of intestine serous membrane" EXACT [OBOL:automatic]
synonym: "bowel anatomical wall serosa" EXACT [OBOL:automatic]
synonym: "bowel anatomical wall serous membrane" EXACT [OBOL:automatic]
synonym: "bowel wall serosa" EXACT [OBOL:automatic]
synonym: "bowel wall serous membrane" EXACT [OBOL:automatic]
synonym: "intestinal serosa" EXACT []
synonym: "intestinal wall serosa" EXACT [OBOL:automatic]
synonym: "intestinal wall serous membrane" EXACT [OBOL:automatic]
synonym: "intestine anatomical wall serosa" EXACT [OBOL:automatic]
synonym: "intestine anatomical wall serous membrane" EXACT [OBOL:automatic]
synonym: "intestine serosa" EXACT []
synonym: "intestine wall serosa" EXACT [OBOL:automatic]
synonym: "intestine wall serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of anatomical wall of bowel" EXACT [OBOL:automatic]
synonym: "serosa of anatomical wall of intestine" EXACT [OBOL:automatic]
synonym: "serosa of bowel anatomical wall" EXACT [OBOL:automatic]
synonym: "serosa of bowel wall" EXACT [OBOL:automatic]
synonym: "serosa of intestinal wall" EXACT [OBOL:automatic]
synonym: "serosa of intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "serosa of intestine wall" EXACT [OBOL:automatic]
synonym: "serosa of wall of bowel" EXACT [OBOL:automatic]
synonym: "serosa of wall of intestine" EXACT [OBOL:automatic]
synonym: "serous membrane of anatomical wall of bowel" EXACT [OBOL:automatic]
synonym: "serous membrane of anatomical wall of intestine" EXACT [OBOL:automatic]
synonym: "serous membrane of bowel anatomical wall" EXACT [OBOL:automatic]
synonym: "serous membrane of bowel wall" EXACT [OBOL:automatic]
synonym: "serous membrane of intestinal wall" EXACT [OBOL:automatic]
synonym: "serous membrane of intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "serous membrane of intestine wall" EXACT [OBOL:automatic]
synonym: "serous membrane of wall of bowel" EXACT [OBOL:automatic]
synonym: "serous membrane of wall of intestine" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of intestine" EXACT []
synonym: "wall of bowel serosa" EXACT [OBOL:automatic]
synonym: "wall of bowel serous membrane" EXACT [OBOL:automatic]
synonym: "wall of intestine serosa" EXACT [OBOL:automatic]
synonym: "wall of intestine serous membrane" EXACT [OBOL:automatic]
xref: FMA:15701
xref: MA:0001538
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0004782 ! implied link automatically realized ! gastrointestinal system serosa
relationship: part_of UBERON:0001262
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001262 ! wall of intestine
relationship: part_of UBERON:0001262 ! wall of intestine
[Term]
id: UBERON:0001244
name: internal anal sphincter
alt_id: UBERON:FMA_15710-MA_0001534
def: "The Sphincter ani internus (or internal anal sphincter) is a muscular ring which surrounds about 2.5 cm of the anal canal; its inferior border is in contact with, but quite separate from, the Sphincter ani externus. It is about 5 mm thick, and is formed by an aggregation of the involuntary circular fibers of the intestine. Its lower border is about 6 mm from the orifice of the anus. [WP,unvetted]." [Wikipedia:Internal_anal_sphincter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "circular layer of anal muscularis externa" EXACT []
synonym: "circular layer of muscularis externa of anal canal" EXACT []
synonym: "circular layer of muscularis propria of anal canal" EXACT []
synonym: "circular muscle layer of anal canal" EXACT []
xref: FMA:15710
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray1079.png/200px-Gray1079.png
xref: MA:0001534
xref: ncithesaurus:Internal_Anal_Sphincter
is_a: UBERON:0004590 ! sphincter muscle
is_a: UBERON:0004916 ! implied link automatically realized ! anal sphincter
relationship: part_of UBERON:0001353 ! anal region
[Term]
id: UBERON:0001245
name: anus
alt_id: UBERON:FMA_15711-MA_0000331-ZFA_0000066
def: "Orifice at the opposite end of an animal's digestive tract from the mouth. Its function is to expel feces, unwanted semi-solid matter produced during digestion, which, depending on the type of animal, may be one or more of: matter which the animal cannot digest, such as bones; food material after all the nutrients have been extracted, for example cellulose or lignin; ingested matter which would be toxic if it remained in the digestive tract; and dead or excess gut bacteria and other endosymbionts." [Wikipedia:Anus, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anal orifice" EXACT []
synonym: "proctodeum" RELATED []
xref: BTO:0001680
xref: FBbt:00001893
xref: FBbt:00003148
xref: FMA:15711
xref: GAID:312
xref: galen:Anus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif
xref: MA:0000331
xref: ncithesaurus:Proctodeum
xref: OpenCyc:Mx4rvVjaEZwpEbGdrcN5Y29ycA
xref: TADS:0000066
xref: WBbt:0005364
is_a: UBERON:0000161 ! orifice
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0000100 ! blastopore
relationship: develops_from UBERON:0000931 ! proctodeum
relationship: part_of UBERON:0001353 ! anal region
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0001246
name: interlobular bile duct
alt_id: UBERON:FMA_15767-MA_0002668
def: "the canals that carry bile in the liver between the intralobular ducts and the biliary ductules; interlobular bile ducts are part of the interlobular portal triad." [MP:0009500]
comment: This class was created automatically from a combination of ontologies
xref: FMA:15767
xref: MA:0002668
xref: ncithesaurus:Interlobular_Bile_Duct
is_a: UBERON:0002394 ! bile duct
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001279 ! portal triad
[Term]
id: UBERON:0001247
name: falciform ligament
alt_id: UBERON:FMA_15823-MA_0001622
def: "a ligament that attaches the liver to the anterior body wall. It is a broad and thin antero-posterior peritoneal fold, falciform in shape, its base being directed downward and backward and its apex upward and backward. It is a remnant of the ventral mesentery of the fetus. It is situated in an antero-posterior plane but lies obliquely, so that one surface faces forward and is in contact with the peritoneum behind the right rectus and the diaphragm, while the other is directed backward and is in contact with the left lobe of the liver. It is attached by its left margin to the under surface of the diaphragm and the posterior surface of the sheath of the right Rectus as low down as the umbilicus; by its right margin it extends from the notch on the anterior margin of the liver, as far back as the posterior surface. It is composed of two layers of peritoneum closely united together. Its base or free edge contains between its layers the round ligament and the paraumbilical veins[WP]." [Wikipedia:Falciform_ligament]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "falciform ligament of liver" EXACT []
synonym: "ligamentum falciforme (hepatis)" EXACT []
xref: EHDAA:4856
xref: EHDAA2:0000499
xref: EMAPA:18288
xref: EMAPA:18908
xref: FMA:15823
xref: HOG:0000355
xref: MA:0001622
xref: ncithesaurus:Falciform_Ligament
is_a: UBERON:0000211 ! ligament
relationship: develops_from UBERON:0002095 ! mesentery
[Term]
id: UBERON:0001248
name: hilum of spleen
alt_id: UBERON:FMA_15841-MA_0002670
def: "The Splenic hilum is a location on the surface of the spleen. It is the point of attachment for the gastrosplenic ligament, and the point of insertion for the splenic artery and splenic vein. [WP,unvetted]." [Wikipedia:Splenic_hilum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "spleen hilum" EXACT []
synonym: "splenic hilum" EXACT []
xref: FMA:15841
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a2/Gray1188.png/200px-Gray1188.png
xref: MA:0002670
xref: ncithesaurus:Splenic_Hilum
is_a: UBERON:0004885 ! implied link automatically realized ! hilum
relationship: part_of UBERON:0002106
intersection_of: UBERON:0004885 ! hilum
intersection_of: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0001249
name: lymphoid nodule of spleen
alt_id: UBERON:FMA_15843-MA_0002672
def: "A lymphoid nodule that is part_of a spleen" [GOC:Obol]
synonym: "lymphatic follicle of spleen" EXACT []
synonym: "lymphoid follicle of spleen" EXACT []
synonym: "Lymphoid nodule of spleen" EXACT [OBOL:automatic]
synonym: "malpighian body" EXACT []
synonym: "spleen lymphoid follicle" EXACT []
synonym: "spleen lymphoid nodule" RELATED []
synonym: "spleen Lymphoid nodule" EXACT [OBOL:automatic]
synonym: "splenic lymphatic follicle" EXACT []
xref: FMA:15843
xref: MA:0002672
is_a: UBERON:0000444 ! implied link automatically realized ! lymphoid follicle
is_a: UBERON:0001744 ! lymphoid tissue
relationship: part_of UBERON:0002106
intersection_of: UBERON:0000444 ! lymphoid follicle
intersection_of: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0001959 ! white pulp of spleen
[Term]
id: UBERON:0001250
name: red pulp of spleen
alt_id: UBERON:FMA_15844-MA_0000756
def: "Red pulp of the spleen is composed of connective tissue known as the cords of Billroth and many splenic sinuses that are engorged with blood, giving it a red color. Its primary function is to filter the blood of antigens, microorganisms, and defective or worn-out red blood cells. The spleen is made of red pulp and white pulp, separated by the marginal zone; 76-79% of a normal spleen is red pulp. Unlike white pulp, which mainly contains lymphocytes such as T cells, red pulp is made up of several different types of blood cells, including platelets, granulocytes, red blood cells, and plasma." [Wikipedia:Red_pulp]
subset: uberon_slim
synonym: "red pulp" EXACT []
synonym: "spleen red pulp" EXACT []
synonym: "splenic red pulp" EXACT []
xref: FMA:15844
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png
xref: MA:0000756
xref: ncithesaurus:Splenic_Red_Pulp
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0001251
name: marginal zone of spleen
alt_id: UBERON:FMA_15852-MA_0000755
def: "region at the interface between the non-lymphoid red pulp and the lymphoid white-pulp of the spleen." [Wikipedia:Marginal_zone]
comment: WP says - (Some sources consider it to be the part of red pulp which borders on the white pulp, while other sources consider it to be neither red pulp nor white pulp.) - we use the adjacency relation here so it overlaps neither. FMA considers this an anatomical line
synonym: "junctional zone of spleen" EXACT []
synonym: "marginal zone" BROAD [Wikipedia:Marginal_zone]
synonym: "spleen marginal zone" EXACT []
xref: FMA:15852
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png
xref: MA:0000755
is_a: UBERON:0000466 ! immaterial anatomical entity
disjoint_from: UBERON:0004879 ! marginal zone of embryo
relationship: adjacent_to UBERON:0001250 ! red pulp of spleen
relationship: adjacent_to UBERON:0001959 ! white pulp of spleen
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0001252
name: adventitia of ureter
alt_id: UBERON:FMA_15892-MA_0002652
comment: This class was created automatically from a combination of ontologies
synonym: "external adventitia of ureter" EXACT []
synonym: "ureter adventitia" EXACT []
synonym: "ureteral adventitia" EXACT []
xref: EMAPA:28114
xref: FMA:15892
xref: MA:0002652
is_a: UBERON:0005742 ! implied link automatically realized ! adventitia
relationship: part_of UBERON:0000056
intersection_of: UBERON:0005742 ! adventitia
intersection_of: part_of UBERON:0000056 ! ureter
[Term]
id: UBERON:0001253
name: lamina propria of ureter
alt_id: UBERON:FMA_15896-MA_0002653
def: "A lamina propria that is part of a ureter [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "lamina propria mucosa of ureter" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of ureter" EXACT [OBOL:automatic]
synonym: "ureter lamina propria" EXACT []
synonym: "ureter lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "ureter lamina propria mucosae" EXACT [OBOL:automatic]
xref: FMA:15896
xref: MA:0002653
is_a: UBERON:0000030 ! lamina propria
relationship: part_of UBERON:0000056
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0001254
name: urothelium of ureter
alt_id: UBERON:FMA_15897-MA_0002655
synonym: "transitional epithelium of ureter" EXACT []
synonym: "ureter transitional epithelium" EXACT []
synonym: "ureter urothelium" EXACT []
xref: FMA:15897
xref: MA:0002655
is_a: UBERON:0000365 ! implied link automatically realized ! urothelium
relationship: part_of UBERON:0000056
intersection_of: UBERON:0000365 ! urothelium
intersection_of: part_of UBERON:0000056 ! ureter
[Term]
id: UBERON:0001255
name: urinary bladder
alt_id: UBERON:FMA_15900-FMA_7203-MA_0000368-MA_0000380-MIAA_0000118-MIAA_0000119-MIAA_0000122-WBbt_0005775-XAO_0000154-ZFA_0000529
def: "Organ with organ cavity which is continuous proximally with the right and left ureters and distally with the urethra. Examples: There is only one urinary bladder. // Four processes (canals) of the excretory canal cell each contain a central collecting lumen which feeds to a central lumenal canal in the cell body; the central canal forms a specialized membrane to release fluids into the excretory duct. These five canals form a continuous H-shaped channel which extends almost the full length of the body, generally in contact with the lateral hypodermis and the pseudocoelom." [WA:dh, Wikipedia:Urinary_bladder]
comment: This class was created automatically from a combination of ontologies. TODO: split
subset: uberon_slim
synonym: "bladder" EXACT []
synonym: "excretory canal" BROAD []
xref: AAO:0000623
xref: BTO:0000123
xref: EFO:0000290
xref: EHDAA:9328
xref: EHDAA2:0000174
xref: FMA:15900
xref: GAID:0000004
xref: galen:UrinaryBladder
xref: HOG:0000740
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Urinary_system.svg/200px-Urinary_system.svg.png
xref: MA:0000380
xref: MAT:0000122
xref: MIAA:0000122
xref: ncithesaurus:Bladder
xref: OpenCyc:Mx4rvVjMmZwpEbGdrcN5Y29ycA
xref: XAO:0000154
is_a: UBERON:0000489 ! cavitated compound organ
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0000164 ! primitive urogenital sinus
relationship: part_of UBERON:0001556 ! lower urinary tract
relationship: part_of UBERON:0002323 ! body cavity
[Term]
id: UBERON:0001256
name: wall of urinary bladder
alt_id: UBERON:FMA_15902-MA_0002493
def: "An anatomical wall that is part of a urinary bladder [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of bladder" EXACT [OBOL:automatic]
synonym: "anatomical wall of urinary bladder" EXACT [OBOL:automatic]
synonym: "bladder anatomical wall" EXACT [OBOL:automatic]
synonym: "bladder wall" EXACT [OBOL:automatic]
synonym: "urinary bladder anatomical wall" EXACT [OBOL:automatic]
synonym: "urinary bladder wall" EXACT []
synonym: "wall of bladder" EXACT [OBOL:automatic]
xref: BTO:0001462
xref: FMA:15902
xref: MA:0002493
xref: ncithesaurus:Bladder_Wall
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001255
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0001257
name: trigone of urinary bladder
alt_id: UBERON:FMA_15910-MA_0002492
def: "The trigone is a smooth triangular region of the internal urinary bladder formed by the two ureteral orifices and the internal urethral orifice. The area is very sensitive to expansion and once stretched to a certain degree, the urinary bladder signals the brain of its need to empty. The signals become stronger as the bladder continues to fill. Embryologically, the trigone of the Bladder is derived from the caudal end of mesonephric ducts. In the Female the mesonephric ducts break down but, thus, the Trigone of the Bladder is less prominent but, still present. [WP,unvetted]." [Wikipedia:Trigone_of_urinary_bladder]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "deep trigone" EXACT []
synonym: "Lieutaud's trigone" EXACT []
synonym: "trigone of bladder" EXACT []
synonym: "urinary bladder trigone" EXACT []
synonym: "vesical trigone" EXACT []
xref: FMA:15910
xref: galen:TrigoneOfUrinaryBladder
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_bladder.jpg/200px-Illu_bladder.jpg
xref: MA:0002492
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0001258
name: neck of urinary bladder
alt_id: UBERON:FMA_15912-MA_0002491
def: "The neck of the urinary bladder is the portion of the urinary bladder adjacent to the prostate gland in men. [WP,unvetted]." [Wikipedia:Neck_of_urinary_bladder]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bladder neck" EXACT []
synonym: "neck of bladder" EXACT []
synonym: "urinary bladder neck" EXACT []
synonym: "vesical neck" EXACT []
xref: FMA:15912
xref: galen:UrinaryBladderNeck
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray1156.png/200px-Gray1156.png
xref: MA:0002491
xref: ncithesaurus:Bladder_Neck
is_a: UBERON:0001560 ! neck of organ
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0001259
name: mucosa of urinary bladder
alt_id: UBERON:FMA_15928-MA_0001692
def: "A mucosa that is part of a urinary bladder [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bladder mucosa" EXACT []
synonym: "bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "bladder organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of urinary bladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of bladder" EXACT []
synonym: "mucous membrane of urinary bladder" EXACT []
synonym: "organ mucosa of bladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of urinary bladder" EXACT [OBOL:automatic]
synonym: "urinary bladder mucosa" EXACT []
synonym: "urinary bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "urinary bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "urinary bladder organ mucosa" EXACT [OBOL:automatic]
xref: EFO:0000293
xref: FMA:15928
xref: galen:MucousMembraneOfUrinaryBladder
xref: MA:0001692
xref: ncithesaurus:Bladder_Mucosa
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001255
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001256 ! wall of urinary bladder
[Term]
id: UBERON:0001260
name: serosa of urinary bladder
alt_id: UBERON:FMA_15932-MA_0001696
def: "A serous membrane that is part of a urinary bladder [Obol]." [OBOL:automatic]
comment: TODO - check serosa/peritoneum
synonym: "bladder serosa" EXACT []
synonym: "bladder serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of bladder" EXACT []
synonym: "serous coat of bladder" EXACT []
synonym: "serous coat of urinary bladder" EXACT []
synonym: "serous membrane of bladder" EXACT [OBOL:automatic]
synonym: "serous membrane of urinary bladder" EXACT [OBOL:automatic]
synonym: "urinary bladder serosa" EXACT []
synonym: "urinary bladder serous membrane" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of urinary bladder" EXACT []
xref: FMA:15932
xref: MA:0001696
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001255
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0001261
name: lamina propria of urinary bladder
alt_id: UBERON:FMA_15935-MA_0001695
def: "A lamina propria that is part of a urinary bladder [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bladder lamina propria" EXACT [OBOL:automatic]
synonym: "bladder lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "bladder lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of bladder" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of urinary bladder" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of bladder" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of urinary bladder" EXACT [OBOL:automatic]
synonym: "lamina propria of bladder" EXACT [OBOL:automatic]
synonym: "urinary bladder lamina propria" EXACT []
synonym: "urinary bladder lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "urinary bladder lamina propria mucosae" EXACT [OBOL:automatic]
xref: FMA:15935
xref: MA:0001695
xref: ncithesaurus:Bladder_Lamina_Propria
is_a: UBERON:0000030 ! lamina propria
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001255
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001259 ! mucosa of urinary bladder
[Term]
id: UBERON:0001262
name: wall of intestine
alt_id: UBERON:FMA_15949-MA_0002693
def: "An anatomical wall that is part of a intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anatomical wall of bowel" EXACT [OBOL:automatic]
synonym: "anatomical wall of intestine" EXACT [OBOL:automatic]
synonym: "bowel anatomical wall" EXACT [OBOL:automatic]
synonym: "bowel wall" EXACT [OBOL:automatic]
synonym: "intestinal wall" EXACT []
synonym: "intestine anatomical wall" EXACT [OBOL:automatic]
synonym: "intestine wall" EXACT []
synonym: "wall of bowel" EXACT [OBOL:automatic]
xref: BTO:0000647
xref: FMA:15949
xref: MA:0002693
is_a: UBERON:0000060 ! implied link automatically realized ! anatomical wall
relationship: part_of UBERON:0000160
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000160 ! intestine
[Term]
id: UBERON:0001263
name: pancreatic acinus
alt_id: UBERON:FMA_16011-MA_0002417
def: "the secretory units of the exocrine pancreas, where fluid containing digestive enzymes is produced; consists of a group of secretory cells surrounding a luminal space that connects to the pancreatic duct." [MP:0009145]
comment: This class was created automatically from a combination of ontologies
synonym: "acinus pancreaticus" EXACT []
synonym: "pancreatic acini" RELATED PLURAL []
xref: FMA:16011
xref: MA:0002417
xref: ncithesaurus:Pancreatic_Acinus
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0001264
name: pancreas
alt_id: UBERON:FMA_16017-FMA_16018-FMA_7198-MA_0000120-MA_0001582-MA_0002415-MIAA_0000075-XAO_0000136-XAO_0000137-ZFA_0000140-ZFA_0001249-ZFA_0001260
def: "Lobular organ the parenchyma of which consists of glandular acini which communicate via a duct system with the duodenum. Examples: There is only one pancreas. // Internal gland organ with distinct tissues with different endocrine and exocrine functions. Its rudiment has three parts, one dorsal and two ventral primordia. The ventral can be first detected at NF stage 37/38. The dorsal is clearly segregated from the duodenal wall by NF stage 39. At NF stage 40 the right and left primordia have fused just above the gasto-duodenal vein. At NF stage 42 blood vessels penetrate into the crevices between the pancreatic acini making them more conspicuous. // Pancreatic tissue composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion." [ISBN:0815318960, ISBN:0881679860, Wikipedia:Pancreas, ZFA:0001249, ZFIN:curator]
subset: uberon_slim
xref: BTO:0000988
xref: EFO:0000855
xref: EHDAA:6893
xref: EHDAA2:0001367
xref: FMA:7198
xref: GAID:334
xref: galen:Pancreas
xref: HOG:0000050
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Illu_pancrease.svg/200px-Illu_pancrease.svg.png
xref: MA:0000120
xref: MAT:0000075
xref: MIAA:0000075
xref: ncithesaurus:Pancreas
xref: OpenCyc:Mx4rvVimZZwpEbGdrcN5Y29ycA
xref: TAO:0000140
xref: XAO:0000136
xref: ZFA:0000140
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: develops_from UBERON:0003922 ! pancreatic bud
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0001265
name: trabecula of spleen
alt_id: UBERON:FMA_16027-MA_0000758
comment: This class was created automatically from a combination of ontologies
synonym: "spleen trabeculum" EXACT []
synonym: "splenic trabecula" EXACT []
xref: FMA:16027
xref: MA:0000758
xref: ncithesaurus:Splenic_Trabecula
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0001266
name: splenic cord
alt_id: UBERON:FMA_16031-MA_0002671
comment: This class was created automatically from a combination of ontologies
synonym: "cord of bilroth" EXACT []
xref: FMA:16031
xref: MA:0002671
xref: ncithesaurus:Splenic_Cord
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001250 ! red pulp of spleen
[Term]
id: UBERON:0001267
name: femoral nerve
alt_id: UBERON:FMA_16486-MA_0001167
def: "The femoral nerve, the largest branch of the lumbar plexus, arises from the ventral divisions of the second, third, and fourth lumbar nerves. It descends through the fibers of the Psoas major, emerging from the muscle at the lower part of its lateral border, and passes down between it and the Iliacus, behind the iliac fascia; it then runs beneath the inguinal ligament, into the thigh, and splits into an anterior and a posterior division. Under the inguinal ligament, it is separated from the femoral artery by a portion of the Psoas major. [WP,unvetted]." [Wikipedia:Femoral_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior crural nerve" EXACT []
xref: EHDAA:5655
xref: EHDAA2:0000507
xref: FMA:16486
xref: GAID:850
xref: HOG:0001411
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/Gray823.png/200px-Gray823.png
xref: MA:0001167
xref: ncithesaurus:Femoral_Nerve
xref: OpenCyc:Mx4rwGC03JwpEbGdrcN5Y29ycA
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001268
name: peritoneal fluid
alt_id: UBERON:FMA_16515-MA_0002531
def: "Transudate contained in the peritoneal cavity." [Wikipedia:Peritoneal_fluid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001031
xref: FMA:16515
xref: MA:0002531
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001179 ! peritoneal cavity
[Term]
id: UBERON:0001269
name: acetabular part of hip bone
alt_id: UBERON:FMA_16579-MA_0001335
def: "The acetabulum is a concave surface of the pelvis. The head of the femur meets with the pelvis at the acetabulum, forming the hip joint. [WP,unvetted]." [Wikipedia:Acetabulum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "acetabulum" EXACT []
xref: AAO:0000770
xref: FMA:16579
xref: GAID:206
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Illu_pelvic_girdle.jpg/200px-Illu_pelvic_girdle.jpg
xref: MA:0001335
xref: ncithesaurus:Acetabulum
xref: OpenCyc:Mx4rwJlP9ZwpEbGdrcN5Y29ycA
is_a: UBERON:0001271 ! pelvic girdle
relationship: part_of UBERON:0001486 ! hip joint
[Term]
id: UBERON:0001270
name: bony pelvis
alt_id: UBERON:FMA_16580-MA_0000532
comment: This class was created automatically from a combination of ontologies
synonym: "pelvis bone" EXACT []
xref: FMA:16580
xref: MA:0000532
is_obsolete: true
[Term]
id: UBERON:0001271
name: pelvic girdle
alt_id: UBERON:FMA_16581-MA_0000293-MIAA_0000182-XAO_0003064-ZFA_0000565
def: "Subdivision of free lower limb, which is the proximal segment of a lower limb and links the free lower limb to the trunk; it is demarcated by the plane of the surface of the acetabular fossa from the free lower limb; together with the free lower limb, it constitutes the lower limb. Examples: There are only two instances, right and left pelvic girdles. // Arched skeletal structure that supports the hind limbs, begins to develop at NF stage 50, and is ossified by NF stage 66." [ISBN:0471209627, NLM:pelvic+girdle, Wikipedia:Pelvic_girdle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "girdle - pelvic" EXACT []
synonym: "pelvic girdle bone" EXACT []
xref: AAO:0000426
xref: EFO:0000947
xref: EHDAA:7149
xref: EHDAA:8324
xref: EHDAA2:0001426
xref: FMA:16581
xref: galen:PelvicGirdle
xref: HOG:0000305
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray242.png/200px-Gray242.png
xref: MA:0000293
xref: MAT:0000182
xref: MIAA:0000182
xref: ncithesaurus:Pelvic_Girdle
xref: TAO:0000565
xref: XAO:0003064
xref: ZFA:0000565
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0002529 ! limb segment
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002091 ! appendicular skeleton
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001272
name: hip bone
alt_id: UBERON:FMA_16585-ZFA_0000623
def: "The hip bone, innominate bone or coxal bone is a large, flattened, irregularly shaped bone, constricted in the center and expanded above and below. It has one of the few ball and socket synovial joints in the body – the so called hip joint. It meets its fellow on the opposite side in the middle line in front, and together they form the sides and anterior wall of the pelvic cavity. Together with the sacrum and coccyx, it comprises the pelvis. [WP,unvetted]." [Wikipedia:Hip_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "basipterygium" EXACT []
synonym: "bone of hip" EXACT [OBOL:automatic]
synonym: "bone of hip region" EXACT [OBOL:automatic]
synonym: "bone of pelvic girdle" EXACT []
synonym: "bone of regio coxae" EXACT [OBOL:automatic]
synonym: "bone organ of hip" EXACT [OBOL:automatic]
synonym: "bone organ of hip region" EXACT [OBOL:automatic]
synonym: "bone organ of regio coxae" EXACT [OBOL:automatic]
synonym: "coxal bone" EXACT []
synonym: "hip bone organ" EXACT [OBOL:automatic]
synonym: "hip region bone" EXACT [OBOL:automatic]
synonym: "hip region bone organ" EXACT [OBOL:automatic]
synonym: "innominate bone" EXACT []
synonym: "pelvic bone" RELATED []
synonym: "regio coxae bone" EXACT [OBOL:automatic]
synonym: "regio coxae bone organ" EXACT [OBOL:automatic]
xref: FMA:16585
xref: GAID:205
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray341.png/200px-Gray341.png
xref: MA:0000655
xref: ncithesaurus:Pelvic_Bone
xref: OpenCyc:Mx4rvVjcrZwpEbGdrcN5Y29ycA
xref: TAO:0000623
xref: ZFA:0000623
is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone
relationship: part_of UBERON:0001464
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001464 ! hip
relationship: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0001273
name: ilium
alt_id: UBERON:FMA_16589-MA_0001336
def: "." [Wikipedia:Ilium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "os iliacum" EXACT []
synonym: "os ilii" EXACT []
xref: AAO:0000772
xref: FMA:16589
xref: GAID:207
xref: galen:Ilium
xref: MA:0001336
xref: ncithesaurus:Ilium
xref: OpenCyc:Mx4rvhwFJ5wpEbGdrcN5Y29ycA
is_a: UBERON:0001271 ! pelvic girdle
relationship: part_of UBERON:0001272 ! hip bone
[Term]
id: UBERON:0001274
name: ischium
alt_id: UBERON:FMA_16592-MA_0001337
def: "The ischium forms the lower and back part of the hip bone (os coxae). The word comes from the Greek ischion, meaning 'hip. ' (Taber's, 1985). Situated below the ilium and behind the pubis, it is one of these three bones whose fusion creates the coxa. It is divisible into three portions: Body of ischium - the portion that supports weight while sitting (especially noticeable on a hard surface). Superior ramus of the ischium Inferior ramus of the ischium It is the strongest of the coxal bones. Clinically, avulsion fracture of the ischial apophysis may occur. [WP,unvetted]." [Wikipedia:Ischium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0000860
xref: FMA:16592
xref: GAID:208
xref: galen:Ischium
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Illu_pelvic_girdle.jpg/200px-Illu_pelvic_girdle.jpg
xref: MA:0001337
xref: ncithesaurus:Ischium
xref: OpenCyc:Mx4rvlzMKpwpEbGdrcN5Y29ycA
is_a: UBERON:0001271 ! pelvic girdle
[Term]
id: UBERON:0001275
name: pubis
alt_id: UBERON:FMA_16595-MA_0001338
def: "." [Wikipedia:Pubis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0000861
xref: FMA:16595
xref: galen:Pubis
xref: MA:0001338
is_a: UBERON:0001271 ! pelvic girdle
relationship: part_of UBERON:0001272 ! hip bone
[Term]
id: UBERON:0001276
name: epithelium of stomach
alt_id: UBERON:FMA_17091-MA_0001610
def: "the epithelial layer of the stomach ." [MP:0000471]
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of stomach" EXACT [OBOL:automatic]
synonym: "epithelial tissue of ventriculus" EXACT [OBOL:automatic]
synonym: "epithelium of ventriculus" EXACT [OBOL:automatic]
synonym: "gastric epithelium" RELATED []
synonym: "stomach epithelial tissue" EXACT [OBOL:automatic]
synonym: "stomach epithelium" EXACT []
synonym: "ventriculus epithelial tissue" EXACT [OBOL:automatic]
synonym: "ventriculus epithelium" EXACT [OBOL:automatic]
xref: BTO:0000500
xref: EHDAA2:0001918
xref: FMA:17091
xref: HOG:0001433
xref: MA:0001610
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa
is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium
relationship: part_of UBERON:0000945
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0001199 ! mucosa of stomach
[Term]
id: UBERON:0001277
name: intestinal epithelium
alt_id: UBERON:FMA_17229-ZFA_0005124
def: "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. Crosnier et al. 2005" [Wikipedia:Intestinal_epithelium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bowel epithelial tissue" EXACT [OBOL:automatic]
synonym: "bowel epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of bowel" EXACT [OBOL:automatic]
synonym: "epithelial tissue of intestine" EXACT [OBOL:automatic]
synonym: "epithelium of bowel" EXACT [OBOL:automatic]
synonym: "epithelium of intestine" EXACT [OBOL:automatic]
synonym: "intestine epithelial tissue" EXACT [OBOL:automatic]
synonym: "intestine epithelium" RELATED []
xref: BTO:0000781
xref: FMA:17229
xref: MA:0001536
xref: ncithesaurus:Intestinal_Epithelium
xref: TAO:0005124
xref: ZFA:0005124
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa
is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium
relationship: part_of UBERON:0000160
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001242 ! intestinal mucosa
[Term]
id: UBERON:0001278
name: epithelium of large intestine
alt_id: UBERON:FMA_17301-MA_0001545
def: "An epithelium that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of large intestine" EXACT [OBOL:automatic]
synonym: "large intestinal epithelium" EXACT []
synonym: "large intestine epithelial tissue" EXACT [OBOL:automatic]
synonym: "large intestine epithelium" EXACT []
xref: FMA:17301
xref: MA:0001545
is_a: UBERON:0001277 ! intestinal epithelium
relationship: part_of UBERON:0000059
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001207 ! mucosa of large intestine
[Term]
id: UBERON:0001279
name: portal triad
alt_id: UBERON:FMA_17523-MA_0002499
def: "." [Wikipedia:Portal_triad]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "trias hepatica" EXACT []
xref: FMA:17523
xref: MA:0002499
xref: ncithesaurus:Portal_Triad
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001172 ! hepatic acinus
[Term]
id: UBERON:0001280
name: liver parenchyma
alt_id: UBERON:0003223
alt_id: UBERON:FMA_17540-MA_0000366
def: "the functional units of the liver including the lobules." [MP:0008986]
comment: This class was created automatically from a combination of ontologies
synonym: "hepatic parenchyma" RELATED []
synonym: "parenchyma of liver" EXACT []
xref: EHDAA:2201
xref: EHDAA2:0001004
xref: FMA:17540
xref: HOG:0000539
xref: MA:0000366
is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002107
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0002107 ! liver
relationship: develops_from UBERON:0004912 ! biliary bud
[Term]
id: UBERON:0001281
name: hepatic sinusoid
alt_id: UBERON:0003275
alt_id: UBERON:FMA_17543-MA_0000367-ZFA_0005091
def: "Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [Wikipedia:Hepatic_sinusoid, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hepatic sinusoids" RELATED []
synonym: "liver sinusoid" EXACT []
synonym: "liver sinusoidal blood vessel" EXACT [OBOL:automatic]
synonym: "sinusoid of liver" EXACT [OBOL:automatic]
synonym: "sinusoidal blood vessel of liver" EXACT [OBOL:automatic]
synonym: "vas capillare sinusoideum" EXACT []
xref: EHDAA:2199
xref: EHDAA:3997
xref: EHDAA:4003
xref: EHDAA:6992
xref: EHDAA:8084
xref: FMA:17543
xref: HOG:0000708
xref: MA:0000367
xref: ncithesaurus:Hepatic_Sinusoid
xref: TAO:0005091
xref: ZFA:0005091
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel
is_a: UBERON:0003909 ! sinusoid
relationship: part_of UBERON:0002107
intersection_of: UBERON:0003909 ! sinusoid
intersection_of: part_of UBERON:0002107 ! liver
relationship: part_of UBERON:0002107 ! liver
relationship: part_of UBERON:0004647 ! liver lobule
[Term]
id: UBERON:0001282
name: intralobular bile duct
alt_id: UBERON:FMA_17545-MA_0002669
def: "." [Wikipedia:Cholangiole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "canal of hering" RELATED []
synonym: "canal of herring" RELATED []
synonym: "cholangiole" EXACT []
xref: FMA:17545
xref: MA:0002669
is_a: UBERON:0002394 ! bile duct
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0004647 ! liver lobule
[Term]
id: UBERON:0001283
name: bile canaliculus
alt_id: UBERON:FMA_17547-MA_0002495
def: "Bile canaliculus is a thin tube that collects bile secreted by hepatocytes. The bile canaliculi merge and form bile ductules, which eventually become common hepatic duct. Hepatocytes are polyhedral in shape, therefore having no set shape or design. They have surfaces facing the sinusoids, (called sinusoidal faces) and surfaces which contact other hepatocytes, (called lateral faces). Bile canaliculi are formed by grooves on some of the lateral faces of these hepatocytes. Microvilli are present in the canaliculi but are sparse. [WP,unvetted]." [Wikipedia:Bile_canaliculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0002841
xref: FMA:17547
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d9/Gray1094.png/200px-Gray1094.png
xref: MA:0002495
xref: ncithesaurus:Bile_Canaliculus
xref: ZFA:0005163
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001113 ! lobe of liver
relationship: part_of UBERON:0004647 ! liver lobule
[Term]
id: UBERON:0001284
name: renal column
alt_id: UBERON:FMA_17633-MA_0001651
def: "The renal column (or Bertin column, or column of Bertin) is a medullary extension of the renal cortex in between the renal pyramids. It allows the cortex to be better anchored. Each column consists of lines of blood vessels and urinary tubes and a fibrous material. [WP,unvetted]." [Wikipedia:Renal_column]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "renal column of bertini" EXACT []
xref: FMA:17633
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Illu_kidney2.jpg/200px-Illu_kidney2.jpg
xref: MA:0001651
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002189 ! outer cortex of kidney
[Term]
id: UBERON:0001285
name: nephron
alt_id: UBERON:FMA_17640-MA_0000375-XAO_0000145
def: "The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]" [PMID:9268568, Wikipedia:Nephron]
subset: uberon_slim
xref: BTO:0000924
xref: FMA:17640
xref: GAID:428
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
xref: MA:0000375
xref: ncithesaurus:Nephron
xref: XAO:0000145
xref: ZFA:0005282
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0003220 ! metanephric blastema
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001286
name: Bowman's space
alt_id: UBERON:FMA_17676-MA_0001664
def: "a narrow chalice-shaped cavity between the glomerular and capsular epithelium of the glomerular capsule of the kidney[TFD]. Between the visceral and parietal layers, into which the filtrate enters after passing through the podocytes' filtration slits[WP]." [http://medical-dictionary.thefreedictionary.com/bowman's+space, Wikipedia:Bowman's_space]
comment: TODO - fix ZFA
subset: uberon_slim
synonym: "bowman's space" EXACT []
synonym: "capsular space" EXACT [http://medical-dictionary.thefreedictionary.com/bowman's+space]
synonym: "urinary space" EXACT []
synonym: "urinary space of renal corpuscle" EXACT [EMAPA:28263]
xref: EMAPA:27985
xref: EMAPA:28263
xref: FMA:17676
xref: MA:0001664
xref: ncithesaurus:Urinary_Space
xref: ZFA:0005283
xref: ZFA:0005312
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001230 ! glomerular capsule
[Term]
id: UBERON:0001287
name: proximal convoluted tubule
alt_id: UBERON:FMA_17693-MA_0001669-ZFA_0001620
def: "The proximal tubule is the portion of the duct system of the nephron of the kidney which leads from Bowman's capsule to the loop of Henle[WP]. Most anterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007)[ZFA]." [Wikipedia:Proximal_convoluted_tubule, ZFIN:curator]
comment: TODO - cleanly define difference between proximal tubule and proximal convoluted tubule
subset: uberon_slim
synonym: "1st convoluted tubule" RELATED []
synonym: "first convoluted tubule" RELATED []
synonym: "PCT" RELATED []
synonym: "proximal convoluted renal tubule" EXACT []
synonym: "tubulus contortus proximalis" EXACT []
xref: FMA:17693
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
xref: MA:0001669
xref: ZFA:0001620
is_a: UBERON:0004134 ! proximal tubule
relationship: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0001288
name: loop of Henle
alt_id: UBERON:FMA_17698-MA_0001675
def: "Portion of the nephron that leads from the proximal convoluted tubule to the distal convoluted tubule. The loop has a hairpin bend in the renal medulla. The main function of this structure is to create a concentration gradient in the medulla of the kidney. By means of a countercurrent multiplier system, which utilizes sodium pumps, it creates an area of high sodium concentration deep in the medulla, near the collecting duct. Water present in the filtrate in the collecting duct flows through aquaporin channels out of the collecting duct, moving passively down its concentration gradient. This process reabsorbs water and creates a concentrated urine for excretion[WP]." [Wikipedia:Loop_of_henle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Henle loop" EXACT []
synonym: "henle's loop" EXACT []
xref: FMA:17698
xref: GAID:437
xref: HOG:0001270
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
xref: MA:0001675
xref: ncithesaurus:Loop_of_Henle
is_a: UBERON:0001231 ! renal tubule
[Term]
id: UBERON:0001289
name: descending limb of loop of Henle
alt_id: UBERON:FMA_17705-MA_0001679
def: "Portion of the renal tubule constituting the first part of the loop of Henle[WP]." [Wikipedia:Descending_limb_of_loop_of_henle]
subset: uberon_slim
synonym: "descending limb" BROAD []
synonym: "descending limb of Henle's loop" EXACT []
synonym: "loop of Henle descending limb" EXACT []
xref: FMA:17705
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
xref: MA:0001679
xref: ncithesaurus:Descending_Limb_of_the_Henle_s_Loop
is_a: UBERON:0001231 ! renal tubule
is_a: UBERON:0005310 ! implied link automatically realized ! pronephric nephron tubule
relationship: part_of UBERON:0001288 ! loop of Henle
relationship: part_of UBERON:0003060 ! pronephric duct
[Term]
id: UBERON:0001290
name: proximal straight tubule
alt_id: UBERON:FMA_17716-MA_0002614-ZFA_0001621
def: "part of the descending limb of the renal tubule, extending from the proximal convoluted tubule to the thin tubule[BTO]. Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal convoluted tubule. Wingert, 2007." [Wikipedia:Proximal_straight_tubule, ZFIN:curator]
comment: TODO - is S3 exactly coincident with PST? Check also relationship to DL
subset: uberon_slim
synonym: "pars recta" RELATED []
synonym: "proximal tubule segment 3" RELATED []
synonym: "S3" EXACT [GO:0072020]
synonym: "thick descending limb of proximal tubule" EXACT []
synonym: "tubulus rectus proximalis" EXACT []
xref: BTO:0000055
xref: FMA:17716
xref: MA:0002614
xref: ZFA:0001621
is_a: UBERON:0001231 ! renal tubule
is_a: UBERON:0005310 ! implied link automatically realized ! pronephric nephron tubule
relationship: part_of UBERON:0001289 ! descending limb of loop of Henle
relationship: part_of UBERON:0004134 ! proximal tubule
[Term]
id: UBERON:0001291
name: thick ascending limb of loop of Henle
alt_id: UBERON:FMA_17717-MA_0001676
def: "a segment of the nephron in the kidney. It can be divided into two parts: that in the renal medulla, and that in the renal cortex[Wikipedia:Thick_ascending_limb_of_loop_of_Henle]." [Wikipedia:Thick_ascending_limb_of_loop_of_Henle]
comment: TODO: thick/thin check. Also - does the loop of Henle overlap the distal convoluted tubule?
subset: uberon_slim
synonym: "ascending thick limb" EXACT []
synonym: "distal straight tubule" EXACT []
synonym: "loop of henle ascending limb thick segment" EXACT [MA:0001677]
synonym: "straight portion of distal convoluted renal tubule" EXACT []
synonym: "thick ascending limb" EXACT []
synonym: "thick ascending limb of Henle's loop" EXACT []
xref: EMAPA:28396
xref: EMAPA:29671
xref: FMA:17722
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
xref: MA:0001677
is_a: UBERON:0004135 ! distal tubule
relationship: part_of UBERON:0005164 ! ascending limb of loop of Henle
[Term]
id: UBERON:0001292
name: distal convoluted tubule
alt_id: UBERON:FMA_17721-MA_0001666
def: "a portion of kidney nephron between the loop of Henle and the collecting duct system." [Wikipedia:Distal_convoluted_tubule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "distal convoluted renal tubule" EXACT []
synonym: "second convoluted tubule" RELATED []
synonym: "tubulus contortus distalis" EXACT []
xref: FMA:17721
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Kidney_nephron.png/200px-Kidney_nephron.png
xref: MA:0001666
xref: ncithesaurus:Distal_Convoluted_Tubule
is_a: UBERON:0004135 ! distal tubule
relationship: develops_from UBERON:0003220 ! metanephric blastema
relationship: part_of UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0001231 ! renal tubule
[Term]
id: UBERON:0001293
name: outer medulla of kidney
alt_id: UBERON:FMA_17733-MA_0001653
comment: This class was created automatically from a combination of ontologies
synonym: "outer renal medulla" EXACT []
synonym: "outer zone of medulla of kidney" EXACT []
synonym: "outer zone of renal medulla" EXACT []
xref: BTO:0001746
xref: FMA:17733
xref: MA:0001653
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000362 ! renal medulla
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001294
name: inner medulla of kidney
alt_id: UBERON:FMA_17734-MA_0001652
comment: This class was created automatically from a combination of ontologies
synonym: "inner renal medulla" EXACT []
synonym: "inner zone of medulla of kidney" EXACT []
synonym: "inner zone of renal medulla" EXACT []
synonym: "set of inner region of renal pyramids" EXACT []
xref: BTO:0001745
xref: FMA:17734
xref: MA:0001652
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000362 ! renal medulla
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001295
name: endometrium
alt_id: UBERON:FMA_17742-MA_0000390-MIAA_0000319
def: "inner membrane of the mammalian uterus.." [Wikipedia:Endometrium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "tunica mucosa (endometrium)" EXACT []
xref: EFO:0000980
xref: FMA:17742
xref: GAID:377
xref: HOG:0001285
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg
xref: MA:0000390
xref: MAT:0000319
xref: MIAA:0000319
xref: ncithesaurus:Endometrium
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0001296
name: myometrium
alt_id: UBERON:FMA_17743-MA_0000391
def: "middle layer of the uterine wall consisting of smooth muscle cells and supporting stromal and vascular tissue." [http://en.wikipedia.org/wiki/Myometrium, Wikipedia:Myometrium]
comment: The inner layer of the uterine wall is the endometrium or uterine lining, and the outer layer the serosa or perimetrium. The myometrium stretches (the smooth muscle cells expand in both size and number[1]) during pregnancy to allow for the harboring of the pregnancy, and contracts in a coordinated fashion during the process of labor. After delivery the myometrium contracts to expel the placenta and reduce blood loss.
subset: uberon_slim
synonym: "tunica muscularis (myometrium)" EXACT []
synonym: "uterine smooth muscle" RELATED []
xref: BTO:0000907
xref: EFO:0001970
xref: FMA:17743
xref: GAID:171
xref: HOG:0001281
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg
xref: MA:0000391
xref: MeSH:D009215
xref: ncithesaurus:Myometrium
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000995 ! uterus
relationship: surrounded_by UBERON:0001297 ! serosa of uterus
relationship: surrounds UBERON:0001295 ! endometrium
[Term]
id: UBERON:0001297
name: serosa of uterus
alt_id: UBERON:FMA_17744-MA_0001729
def: "Outer serosa layer of the uterus." [Wikipedia:Perimetrium]
comment: TODO - check for parallel structure with peritoneum
synonym: "perimetrium" EXACT [http://en.wikipedia.org/wiki/Perimetrium]
synonym: "serous coat of uterus" EXACT []
synonym: "serous membrane of uterus" EXACT [OBOL:automatic]
synonym: "tunica serosa (perimetrium)" EXACT []
synonym: "uterine serosa" EXACT []
synonym: "uterus serosa" EXACT []
synonym: "uterus serous membrane" EXACT [OBOL:automatic]
synonym: "visceral peritoneum of uterus" EXACT []
xref: FMA:17744
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg
xref: MA:0001729
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000995
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0000995 ! uterus
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0001298
name: psoas major
alt_id: UBERON:FMA_18060-MA_0002358
def: "The psoas major is a long fusiform muscle placed on the side of the lumbar region of the vertebral column and brim of the lesser pelvis. It joins the iliacus muscle to form the iliopsoas. In less than 50 per cent of subjects the psoas major is accompanied by the psoas minor. [WP,unvetted]." [Wikipedia:Psoas_major]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "psoas major muscle" EXACT []
xref: BTO:0001877
xref: FMA:18060
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: MA:0002358
xref: ncithesaurus:Psoas_Major
xref: OpenCyc:Mx4rwU5ZfZwpEbGdrcN5Y29ycA
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001299
name: glans penis
alt_id: UBERON:FMA_18247-MA_0002726
def: "The glans penis (or simply glans) is the sensitive bulbous structure at the distal end of the penis. It is also commonly referred to as the 'head' of the penis. Slang terms include 'helmet', 'nob' (or 'knob'), and 'bell end', and all refer to its distinctive shape. The glans penis is anatomically homologous to the clitoral glans of the female. When the penis is flaccid it is wholly or partially covered by the foreskin, except in men who have been fully circumcised. The foreskin serves to protect this delicate mucous membrane covered structure. [WP,unvetted]." [Wikipedia:Glans_penis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003118
xref: FMA:18247
xref: GAID:0000012
xref: HOG:0001475
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png
xref: MA:0002726
xref: ncithesaurus:Glans_Penis
xref: OpenCyc:Mx4rvdCpE5wpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000989 ! penis
[Term]
id: UBERON:0001300
name: scrotum
alt_id: UBERON:FMA_18252-MA_0000409
def: "In some male mammals the scrotum (also referred to as the cod) is a protuberance of skin and muscle containing the testicles. It is an extension of the abdomen, and is located between the penis and anus. In humans and some other mammals, the base of the scrotum becomes covered with pubic hair at puberty. In common speech, the scrotum is often improperly referred to as the testicles, which actually refer to organs encased inside the scrotum. The scrotum is homologous to the labia majora in females. It becomes tight when sexually aroused. [WP,unvetted]." [Wikipedia:Scrotum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003098
xref: FMA:18252
xref: GAID:393
xref: galen:Scrotum
xref: http://upload.wikimedia.org/wikipedia/en/thumb/3/3e/HairedHumanScrotum.png/200px-HairedHumanScrotum.png
xref: MA:0000409
xref: ncithesaurus:Scrotum
xref: OpenCyc:Mx4rwUC_upwpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001301
name: epididymis
alt_id: UBERON:FMA_18255-MA_0000397-MIAA_0000130
def: "A narrow, tightly-coiled tube connecting the efferent ducts from the rear of each testicle to its vas deferens." [Wikipedia:Epididymis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "epididymus" EXACT []
xref: BTO:0000408
xref: EFO:0000982
xref: FMA:18255
xref: GAID:397
xref: galen:Epididymis
xref: HOG:0001265
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_testis_surface.jpg/200px-Illu_testis_surface.jpg
xref: MA:0000397
xref: MAT:0000130
xref: MIAA:0000130
xref: ncithesaurus:Epididymis
is_a: UBERON:0000058 ! duct
is_a: UBERON:0005904 ! implied link automatically realized ! duct of male reproductive system
relationship: part_of UBERON:0000473 ! testis
[Term]
id: UBERON:0001302
name: right uterine tube
alt_id: UBERON:FMA_18483-MA_0001717
def: "A fallopian tube that is part of a right side of organism [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "right fallopian tube" EXACT []
synonym: "right oviduct" EXACT []
xref: FMA:18483
xref: MA:0001717
xref: ncithesaurus:Right_Fallopian_Tube
is_a: UBERON:0003889 ! implied link automatically realized ! fallopian tube
relationship: part_of UBERON:0004532
intersection_of: UBERON:0003889 ! fallopian tube
intersection_of: part_of UBERON:0004532 ! right side of organism
[Term]
id: UBERON:0001303
name: left uterine tube
alt_id: UBERON:FMA_18484-MA_0001716
def: "A fallopian tube that is part of a left side of organism [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "left fallopian tube" EXACT []
synonym: "left oviduct" EXACT []
xref: FMA:18484
xref: MA:0001716
xref: ncithesaurus:Left_Fallopian_Tube
is_a: UBERON:0003889 ! implied link automatically realized ! fallopian tube
relationship: part_of UBERON:0004531
intersection_of: UBERON:0003889 ! fallopian tube
intersection_of: part_of UBERON:0004531 ! left side of organism
[Term]
id: UBERON:0001304
name: germinal epithelium of ovary
alt_id: UBERON:FMA_18629-MA_0001711
def: "layer of simple cuboidal cells covering surface of ovary[WP]." [http://en.wikipedia.org/wiki/Talk\:Germinal_epithelium_%28female%29, PMID:16923182, Wikipedia:Germinal_epithelium_(female)]
comment: Controversial - see article. Requires expert input
synonym: "epithelium superficiale (ovarium)" EXACT []
synonym: "female coelomic epithelium" RELATED [EMAPA:17384]
synonym: "germinal epithelium (female)" EXACT [Wikipedia:Germinal_epithelium_(female)]
synonym: "ovary germinal epithelium" EXACT []
xref: EHDAA:8126
xref: EHDAA2:0001361
xref: EMAPA:17384
xref: EMAPA:27564
xref: FMA:18629
xref: HOG:0000630
xref: MA:0001711
is_a: UBERON:0000484 ! implied link automatically realized ! simple cuboidal epithelium
relationship: part_of UBERON:0001307
intersection_of: UBERON:0000484 ! simple cuboidal epithelium
intersection_of: part_of UBERON:0001307 ! capsule of ovary
[Term]
id: UBERON:0001305
name: ovarian follicle
alt_id: UBERON:FMA_18640-MA_0001707-ZFA_0001110
def: "Ovarian follicles are the basic units of female reproductive biology, each of which is composed of roughly spherical aggregations of cells found in the ovary. They contain a single oocyte (aka ovum or egg). These structures are periodically initiated to grow and develop, culminating in ovulation of usually a single competent oocyte in humans. These eggs/ova are only developed once every menstrual cycle (e.g. once a month in humans)[WP]." [Wikipedia:Ovarian_follicle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "egg follicle" RELATED []
synonym: "follicle of ovary" EXACT []
synonym: "ovary follicle" EXACT []
xref: BTO:0000475
xref: FMA:18640
xref: GAID:371
xref: HOG:0001536
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Primary_follicle-4.JPG/200px-Primary_follicle-4.JPG
xref: MA:0001707
xref: MAT:0000449
xref: ncithesaurus:Ovarian_Follicle
xref: TAO:0001110
xref: ZFA:0001110
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: develops_from UBERON:0005296 ! ovary sex cord
relationship: part_of UBERON:0000992 ! ovary
[Term]
id: UBERON:0001306
name: cumulus oophorus
alt_id: UBERON:FMA_18659-MA_0002414
def: "At one part of the mature follicle, the cells of the membrana granulosa are collected into a mass which projects into the cavity of the follicle. This cluster of cells is termed the cumulus oophorus (Latin cumulus=heap, Greek oo=egg + phorus=carrying) discus proligerus, and it is released with the embedded oocyte during ovulation. In order for fertilization to occur this layer must be penetrated by the spermatocyte. [WP,unvetted]." [Wikipedia:Cumulus_oophorus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cumulus ovaricus" EXACT []
xref: FMA:18659
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray1164.png/200px-Gray1164.png
xref: MA:0002414
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001305 ! ovarian follicle
[Term]
id: UBERON:0001307
name: capsule of ovary
alt_id: UBERON:FMA_18662-MA_0001706
comment: This class was created automatically from a combination of ontologies
synonym: "ovarian capsule" EXACT []
synonym: "ovary capsule" EXACT []
xref: FMA:18662
xref: MA:0001706
xref: ncithesaurus:Ovarian_Capsule
is_a: UBERON:0003893 ! capsule
relationship: surrounds UBERON:0000992
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0000992 ! ovary
relationship: surrounds UBERON:0000992 ! ovary
[Term]
id: UBERON:0001308
name: external iliac artery
alt_id: UBERON:FMA_18805-MA_0001973
def: "The external iliac artery is a large artery in the pelvic region that carries blood to the lower limb. The external iliac artery is a paired artery, meaning there is one on each side of the body: a right external iliac artery and left external iliac artery. The external iliac artery is accompanied by the external iliac vein, which is located posterior to the artery. [WP,unvetted]." [Wikipedia:External_iliac_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0000463
xref: FMA:18805
xref: galen:ExternalIliacArtery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray539.png/200px-Gray539.png
xref: MA:0001973
xref: ncithesaurus:External_Iliac_Artery
xref: OpenCyc:Mx4rvkh47pwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0001191 ! common iliac artery
[Term]
id: UBERON:0001309
name: internal iliac artery
alt_id: UBERON:FMA_18808-MA_0001974
def: "The internal iliac artery (formerly known as the hypogastric artery) is the main artery of the pelvis. [WP,unvetted]." [Wikipedia:Internal_iliac_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:18808
xref: galen:InternalIliacArtery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d3/Iliac_artery_bifurcation.PNG/200px-Iliac_artery_bifurcation.PNG
xref: MA:0001974
xref: ncithesaurus:Internal_Iliac_Artery
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0001191 ! common iliac artery
[Term]
id: UBERON:0001310
name: umbilical artery
alt_id: UBERON:FMA_18820-MA_0002072
def: "The umbilical artery is a paired artery (with one for each half of the body) that is found in the abdominal and pelvic regions. In the fetus, it extends into the umbilical cord. [WP,unvetted]." [Wikipedia:Umbilical_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000841
xref: EHDAA:1026
xref: EHDAA:410
xref: EHDAA2:0002106
xref: FMA:18820
xref: GAID:516
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Gray502.png/200px-Gray502.png
xref: MA:0002072
xref: ncithesaurus:Umbilical_Artery
xref: OpenCyc:Mx4rCWdhMGWbEd2AAABQjYGu0g
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001311
name: inferior vesical artery
alt_id: UBERON:FMA_18823-MA_0002079
def: "The INF vesical artery is an artery in the pelvis that supplies the lower part of the bladder. [WP,unvetted]." [Wikipedia:Inferior_vesical_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria vesicali inferior" EXACT []
xref: FMA:18823
xref: MA:0002079
xref: ncithesaurus:Inferior_Vesical_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001312
name: superior vesical artery
alt_id: UBERON:FMA_18839-MA_0002080
def: "The superior vesical artery supplies numerous branches to the upper part of the bladder. From one of these a slender vessel, the artery to the ductus deferens, takes origin and accompanies the duct in its course to the testis, where it anastomoses with the internal spermatic artery. Other branches supply the ureter. The first part of the superior vesical artery represents the terminal section of the previous portion of the umbilical artery. [WP,unvetted]." [Wikipedia:Superior_vesical_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria vesicalis superior" EXACT []
xref: FMA:18839
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Internal_iliac_branches.PNG/200px-Internal_iliac_branches.PNG
xref: MA:0002080
xref: ncithesaurus:Superior_Vesical_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001313
name: iliolumbar artery
alt_id: UBERON:FMA_18845-MA_0001976
def: "The iliolumbar artery is a branch of the posterior trunk of the internal iliac artery. [WP,unvetted]." [Wikipedia:Iliolumbar_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ilio-lumbar artery" EXACT []
xref: FMA:18845
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png
xref: MA:0001976
xref: ncithesaurus:Iliolumbar_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001314
name: obturator artery
alt_id: UBERON:FMA_18865-MA_0002008
def: "The obturator artery passes antero-inferiorly (forwards and downwards) on the lateral wall of the pelvis, to the upper part of the obturator foramen, and, escaping from the pelvic cavity through the obturator canal, it divides into both an anterior and a posterior branch. [WP,unvetted]." [Wikipedia:Obturator_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:18865
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6f/Gray547.png/200px-Gray547.png
xref: MA:0002008
xref: ncithesaurus:Obturator_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001315
name: superior gluteal artery
alt_id: UBERON:FMA_18868-MA_0002054
def: "The superior gluteal artery (gluteal artery) is the largest branch of the internal iliac artery, and appears to be the continuation of the posterior division of that vessel. It is a short artery which runs backward between the lumbosacral trunk and the first sacral nerve, and, passing out of the pelvis above the upper border of the Piriformis, immediately divides into a superficial and a deep branch. Within the pelvis it gives off a few branches to the Iliacus, Piriformis, and Obturator internus, and just previous to quitting that cavity, a nutrient artery which enters the ilium. [WP,unvetted]." [Wikipedia:Superior_gluteal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria glutealis superior" EXACT []
xref: FMA:18868
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray1244.png/200px-Gray1244.png
xref: MA:0002054
xref: ncithesaurus:Gluteal_Artery
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0001015 ! musculature
[Term]
id: UBERON:0001316
name: external iliac vein
alt_id: UBERON:FMA_18883-MA_0002144
def: "The external iliac veins are large veins that connect the femoral veins to the common iliac veins. Their origin is at the inferior margin of the inguinal ligaments and they terminate when they join the internal iliac veins (to form the common iliac veins). Both external iliac veins are accompanied along their course by external iliac arteries. [WP,unvetted]." [Wikipedia:External_iliac_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0000464
xref: FMA:18883
xref: galen:ExternalIliacVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Iliac_veins.gif/200px-Iliac_veins.gif
xref: MA:0002144
xref: ncithesaurus:External_Iliac_Vein
xref: OpenCyc:Mx4rwQUYtZwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001317
name: internal iliac vein
alt_id: UBERON:FMA_18884-MA_0002145
def: "The internal iliac vein (hypogastric vein) begins near the upper part of the greater sciatic foramen, passes upward behind and slightly medial to the hypogastric artery and, at the brim of the pelvis, joins with the external iliac to form the common iliac vein. [WP,unvetted]." [Wikipedia:Internal_iliac_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0000874
xref: FMA:18884
xref: galen:InternalIliacVein
xref: HOG:0000749
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Internaliliacv.png/200px-Internaliliacv.png
xref: MA:0002145
xref: ncithesaurus:Internal_Iliac_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001318
name: inferior vesical vein
alt_id: UBERON:FMA_18890-MA_0002264
comment: This class was created automatically from a combination of ontologies
xref: FMA:18890
xref: MA:0002264
is_a: UBERON:0002460 ! vesical vein
[Term]
id: UBERON:0001319
name: vaginal vein
alt_id: UBERON:FMA_18899-MA_0002251
def: "The vaginal plexuses are placed at the sides of the vagina; they communicate with the uterine, vesical, and hemorrhoidal plexuses, and are drained by the vaginal veins, one on either side, into the hypogastric veins. [WP,unvetted]." [Wikipedia:Vaginal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vagina vein" EXACT [OBOL:automatic]
synonym: "vein of vagina" EXACT [OBOL:automatic]
xref: FMA:18899
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Gray589.png/200px-Gray589.png
xref: MA:0002251
is_a: UBERON:0001638 ! vein
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000996
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0001320
name: iliolumbar vein
alt_id: UBERON:FMA_18902-MA_0002146
def: "The iliolumbar vein is the vena comitans of the iliolumbar artery. The obturator nerve crosses superficial to it. A single vein is found more commonly than a double vein. It drains vertebral segments four and five. It is closely related to the ascending lumbar vein. [WP,unvetted]." [Wikipedia:Iliolumbar_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ilio-lumbar vein" EXACT []
xref: FMA:18902
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png
xref: MA:0002146
xref: ncithesaurus:Iliolumbar_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001321
name: obturator vein
alt_id: UBERON:FMA_18914-MA_0002183
def: "The obturator vein begins in the upper portion of the adductor region of the thigh and enters the pelvis through the upper part of the obturator foramen, in the obturator canal. It runs backward and upward on the lateral wall of the pelvis below the obturator artery, and then passes between the ureter and the hypogastric artery, to end in the hypogastric vein. It has an anterior and posterior branch (similar to obturator artery). [WP,unvetted]." [Wikipedia:Obturator_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:18914
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png
xref: MA:0002183
xref: ncithesaurus:Obturator_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001322
name: sciatic nerve
alt_id: UBERON:FMA_19034-MA_0001172
def: "The sciatic nerve (also known as the ischiatic nerve) is a large nerve in humans and other animals. It begins in the lower back and runs through the buttock and down the lower limb. It is the longest and widest single nerve in the human body. The sciatic supplies nearly the whole of the skin of the leg, the muscles of the back of the thigh, and those of the leg and foot. It is derived from spinal nerves L4 through S3. It contains fibres from both the anterior and posterior divisions of the lumbosacral plexus. [WP,unvetted]." [Wikipedia:Sciatic_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001221
xref: EFO:0001417
xref: EHDAA:5659
xref: EHDAA2:0001779
xref: FMA:19034
xref: GAID:852
xref: HOG:0000894
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray1244.png/200px-Gray1244.png
xref: MA:0001172
xref: ncithesaurus:Sciatic_Nerve
xref: NIF_GrossAnatomy:birnlex_1133
xref: OpenCyc:Mx4rv7MlDJwpEbGdrcN5Y29ycA
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve
relationship: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0001815 ! lumbosacral nerve plexus
[Term]
id: UBERON:0001323
name: tibial nerve
alt_id: UBERON:FMA_19035-MA_0001173
def: "The tibial nerve is a branch of the sciatic nerve. The tibial nerve passes through the popliteal fossa to pass below the arch of soleus. In the popliteal fossa the nerve gives off branches to gastrocnemius, popliteus, soleus and plantaris muscles, an articular branch to the knee joint, and a cutaneous branch that will become the sural nerve. The sural nerve is joined by fibres from the common peroneal nerve and runs down the calf to supply the lateral side of the foot. Below the soleus muscle the nerve lies close to the tibia and supplies the tibialis posterior, the flexor digitorum longus and the flexor hallucis longus. The nerve passes into the foot running posterior to the medial malleolus. Here it is bound down by the flexor retinaculum in company with the posterior tibial artery. [WP,unvetted]." [Wikipedia:Tibial_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "medial popliteal nerve" EXACT []
xref: FMA:19035
xref: GAID:854
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1a/Gray828.png/200px-Gray828.png
xref: MA:0001173
xref: ncithesaurus:Tibial_Nerve
xref: OpenCyc:Mx4rwNya8JwpEbGdrcN5Y29ycA
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001324
name: common fibular nerve
alt_id: UBERON:FMA_19039-MA_0001169
def: "The common peroneal nerve (common fibular nerve; external popliteal nerve; peroneal nerve), about one-half the size of the tibial nerve, is derived from the dorsal branches of the fourth and fifth lumbar and the first and second sacral nerves. It descends obliquely along the lateral side of the popliteal fossa to the head of the fibula, close to the medial margin of the biceps femoris muscle. It lies between the tendon of the biceps femoris and lateral head of the gastrocnemius muscle, winds around the neck of the fibula, between the peronæus longus and the bone, and divides beneath the muscle into the superficial peroneal nerve (superficial fibular nerve) and deep peroneal nerve (deep fibular nerve). [WP,unvetted]." [Wikipedia:Common_fibular_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "common peroneal nerve" EXACT []
synonym: "peroneal nerve" EXACT []
xref: FMA:19039
xref: GAID:853
xref: MA:0001169
xref: ncithesaurus:Peroneal_Nerve
xref: OpenCyc:Mx4rvwKexZwpEbGdrcN5Y29ycA
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001325
name: muscle of pelvis
alt_id: UBERON:FMA_19086-MA_0000534
def: "Muscle (organ) which is a part of the pelvis. Examples: levator ani," []
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "muscle organ of pelvis" EXACT [OBOL:automatic]
synonym: "pelvic muscle" EXACT []
synonym: "pelvis muscle" EXACT []
synonym: "pelvis muscle organ" EXACT [OBOL:automatic]
xref: FMA:19086
xref: MA:0000534
is_a: UBERON:0001774 ! muscle of trunk
is_a: UBERON:0005179 ! implied link automatically realized ! pelvis organ
relationship: part_of UBERON:0002355
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002355 ! pelvis
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0001326
name: levator ani
alt_id: UBERON:FMA_19087-MA_0002332
def: "The Levator ani is a broad, thin muscle, situated on the side of the pelvis. It is attached to the inner surface of the side of the lesser pelvis, and unites with its fellow of the opposite side to form the greater part of the floor of the pelvic cavity. It supports the viscera in pelvic cavity, and surrounds the various structures which pass through it. In combination with the Coccygeus muscle, it forms the pelvic diaphragm. [WP,unvetted]." [Wikipedia:Levator_ani]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:19087
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray404.png/200px-Gray404.png
xref: MA:0002332
xref: ncithesaurus:Levator_Ani
is_a: UBERON:0001325 ! muscle of pelvis
relationship: part_of UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0001327
name: coccygeus
alt_id: UBERON:FMA_19088-MA_0002277
def: "The Coccygeus is a muscle of the pelvic wall (i.e. peripheral to the pelvic floor), situated behind the levator ani and in front of the sacrospinous ligament. It is a triangular plane of muscular and tendinous fibers, arising by its apex from the spine of the ischium and sacrospinous ligament, and inserted by its base into the margin of the coccyx and into the side of the lowest piece of the sacrum. It assists the Levator ani and Piriformis in closing in the back part of the outlet of the pelvis. [WP,unvetted]." [Wikipedia:Coccygeus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ischiococcygeus" EXACT []
xref: FMA:19088
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray404.png/200px-Gray404.png
xref: MA:0002277
is_a: UBERON:0001325 ! muscle of pelvis
[Term]
id: UBERON:0001328
name: lobe of prostate
alt_id: UBERON:FMA_19570-MA_0001738
comment: This class was created automatically from a combination of ontologies
synonym: "lobe of prostate gland" EXACT []
synonym: "prostate gland lobe" EXACT []
synonym: "prostatic lobe" EXACT []
xref: BTO:0000548
xref: FMA:19570
xref: MA:0001738
xref: ncithesaurus:Prostate_Gland_Lobe
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0001329
name: anterior lobe of prostate
alt_id: UBERON:FMA_19574-MA_0002422
def: "the prostate lobe that appears as a thin tubular structure, attached to the lesser curvature of the paired seminal vesicles." [MP:0001163]
comment: This class was created automatically from a combination of ontologies
synonym: "anterior lobe of prostate gland" EXACT []
synonym: "commissure of prostate" EXACT []
synonym: "isthmus of prostate" EXACT []
synonym: "isthmus of prostate gland" EXACT []
synonym: "prostate gland anterior lobe" EXACT []
synonym: "prostatic isthmus" EXACT []
xref: BTO:0003158
xref: FMA:19574
xref: MA:0002422
is_a: UBERON:0001328 ! lobe of prostate
[Term]
id: UBERON:0001330
name: pampiniform plexus
alt_id: UBERON:FMA_19607-MA_0001866
def: "The pampiniform plexus is a network of many small veins found in the human male spermatic cord. It is formed by the union of multiple spermatic veins from the back of the testis and tributaries from the epididymis. The veins of the plexus ascend along the cord in front of the ductus deferens. Below the subcutaneous inguinal ring they unite to form three or four veins, which pass along the inguinal canal, and, entering the abdomen through the abdominal inguinal ring, coalesce to form two veins. These again unite to form a single vein, the testicular vein, which opens on the right side into the inferior vena cava, at an acute angle, and on the left side into the left renal vein, at a right angle. The pampinoform plexus forms the chief mass of the cord. In addition to its function in venous return from the testes, the pampiniform plexus also plays a role in the temperature regulation of the testes. It acts as a heat exchanger, cooling blood in adjacent arteries. An abnormal enlargement of the pampiniform plexus is a medical condition called varicocele. [WP,unvetted]." [Wikipedia:Pampiniform_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pampiniform venous plexus" EXACT []
synonym: "plexus of veins of fascia of prostate" EXACT []
synonym: "venous plexus of fascia of prostate" EXACT []
synonym: "venous plexus of fascia of prostate gland" EXACT []
xref: FMA:19607
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray1147.png/200px-Gray1147.png
xref: MA:0001866
is_a: UBERON:0001593 ! venous plexus
[Term]
id: UBERON:0001331
name: skin of penis
alt_id: UBERON:FMA_19638-MA_0002727
def: "A zone of skin that is part of a penis [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "penile skin" EXACT []
synonym: "penis skin" EXACT []
synonym: "penis zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of penis" EXACT [OBOL:automatic]
xref: FMA:19638
xref: MA:0002727
is_a: UBERON:0000014 ! implied link automatically realized ! zone of skin
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000989
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000989 ! penis
relationship: continuous_with UBERON:0001085 ! skin of trunk
[Term]
id: UBERON:0001332
name: prepuce of penis
alt_id: UBERON:FMA_19639-MA_0000407
def: "In male human anatomy, the foreskin is a retractable double-layered fold of skin and mucous membrane that covers the glans penis and protects the urinary meatus when the penis is not erect. It is also described as the prepuce, a technically broader term that also includes the clitoral hood in women, to which the foreskin is embryonically homologous. [WP,unvetted]." [Wikipedia:Foreskin]
comment: Note FMA also has FMA:27648 skin of prepuce of penis - how is this different? MA uses the term prepuce for the male prepuce
subset: uberon_slim
synonym: "foreskin" EXACT []
synonym: "penile prepuce" EXACT []
synonym: "prepuce" BROAD [MA:0000407, Wikipedia:Foreskin]
synonym: "prepuce of male" EXACT [EMAPA:18989]
synonym: "preputial skin" RELATED [FMA:27648]
synonym: "skin of prepuce of penis" NARROW [FMA:27648]
xref: BTO:0001113
xref: EFO:0001664
xref: EMAPA:18989
xref: FMA:19639
xref: http://upload.wikimedia.org/wikipedia/en/thumb/c/cc/Foreskin2.jpg/200px-Foreskin2.jpg
xref: MA:0000407
xref: ncithesaurus:Prepuce
xref: OpenCyc:Mx4rvVjlTZwpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001331 ! skin of penis
[Term]
id: UBERON:0001333
name: male urethra
alt_id: UBERON:FMA_19668-MA_0002640
def: "In anatomy, the urethra (from Greek οὐρήθρα - ourethra) is a tube which connects the urinary bladder to the outside of the body. The urethra has an excretory function in both sexes to pass urine to the outside, and also a reproductive function in the male, as a passage for semen. The external urethral sphincter is a striated muscle that allows voluntary control over urination. [WP,unvetted]." [Wikipedia:Male_urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:19668
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png
xref: MA:0002640
xref: ncithesaurus:Male_Urethra
is_a: UBERON:0000057 ! implied link automatically realized ! urethra
relationship: part_of UBERON:0003101
intersection_of: UBERON:0000057 ! urethra
intersection_of: part_of UBERON:0003101 ! male organism
[Term]
id: UBERON:0001334
name: female urethra
alt_id: UBERON:FMA_19669-MA_0002637
def: "In anatomy, the urethra (from Greek οὐρήθρα - ourethra) is a tube which connects the urinary bladder to the outside of the body. The urethra has an excretory function in both sexes to pass urine to the outside, and also a reproductive function in the male, as a passage for semen. The external urethral sphincter is a striated muscle that allows voluntary control over urination. [WP,unvetted]." [Wikipedia:Female_urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:19669
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Female_anatomy.png/200px-Female_anatomy.png
xref: MA:0002637
xref: ncithesaurus:Female_Urethra
is_a: UBERON:0000057 ! implied link automatically realized ! urethra
relationship: part_of UBERON:0003100
intersection_of: UBERON:0000057 ! urethra
intersection_of: part_of UBERON:0003100 ! female organism
[Term]
id: UBERON:0001335
name: prostatic urethra
alt_id: UBERON:FMA_19673-MA_0002646
def: "The prostatic urethra, the widest and most dilatable part of the urethra canal, is about 3 cm. long. It runs almost vertically through the prostate from its base to its apex, lying nearer its anterior than its posterior surface; the form of the canal is spindle-shaped, being wider in the middle than at either extremity, and narrowest below, where it joins the membranous portion. A transverse section of the canal as it lies in the prostate is horse-shoe-shaped, with the convexity directed forward. [WP,unvetted]." [Wikipedia:Prostatic_urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "prostatic part of urethra" EXACT []
xref: BTO:0003163
xref: FMA:19673
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray1142.png/200px-Gray1142.png
xref: MA:0002646
xref: ncithesaurus:Prostatic_Portion_of_the_Male_Urethra
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001333 ! male urethra
[Term]
id: UBERON:0001336
name: membranous urethra
alt_id: UBERON:FMA_19674-MA_0002647
def: "The intermediate part of male urethra (membranous portion) is the shortest, least dilatable, and, with the exception of the external orifice, the narrowest part of the canal. It extends downward and forward, with a slight anterior concavity, between the apex of the prostate and the bulb of the urethra, perforating the urogenital diaphragm about 2.5 cm. below and behind the pubic symphysis. The hinder part of the urethral bulb lies in apposition with the inferior fascia of the urogenital diaphragm, but its upper portion diverges somewhat from this fascia: the anterior wall of the membranous urethra is thus prolonged for a short distance in front of the urogenital diaphragm; it measures about 2 cm. in length, while the posterior wall which is between the two fasciæ of the diaphragm is only 1.25 cm. long. The membranous portion of the urethra is completely surrounded by the fibers of the Sphincter urethrae membranaceae. In front of it the deep dorsal vein of the penis enters the pelvis between the transverse ligament of the pelvis and the arcuate pubic ligament; on either side near its termination are the bulbourethral glands. [WP,unvetted]." [Wikipedia:Membranous_urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intermediate part of urethra" EXACT []
synonym: "intermediate urethra" EXACT []
synonym: "membranous part of urethra" EXACT []
synonym: "pars membranacea (urethrae)" EXACT []
xref: FMA:19674
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray1142.png/200px-Gray1142.png
xref: MA:0002647
xref: ncithesaurus:Membranous_Urethra
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0001337
name: spongiose part of urethra
alt_id: UBERON:FMA_19675-MA_0002643
def: "The spongy urethra (cavernous portion of urethra, penile urethra) is the longest part of the male urethra, and is contained in the corpus spongiosum urethraeæ. It is about 15 cm long, and extends from the termination of the membranous portion to the external urethral orifice. Commencing below the inferior fascia of the urogenital diaphragm it passes forward and upward to the front of the symphysis pubis; and then, in the flaccid condition of the penis, it bends downward and forward. It is narrow, and of uniform size in the body of the penis, measuring about 6 mm in diameter; it is dilated behind, within the bulb, and again anteriorly within the glans penis, where it forms the fossa navicularis urethrae. [WP,unvetted]." [Wikipedia:Penile_urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "penile urethra" EXACT []
synonym: "spongiose urethra" EXACT []
synonym: "spongy urethra (male)" EXACT []
xref: FMA:19675
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray1142.png/200px-Gray1142.png
xref: MA:0002643
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001333 ! male urethra
[Term]
id: UBERON:0001338
name: urethral gland
alt_id: UBERON:FMA_19683-MA_0001688
def: "The term urethral or periurethral gland (also Littre gland after Alexis Littré, or preputial glands) is used to refer to any of the many glands that branch off the wall of the urethra of male mammals. The glands secrete mucus, which is incorporated into the semen, and are most numerous in the section of the urethra that runs through the penis. [WP,unvetted]." [Wikipedia:Urethral_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gland of urethra" EXACT [OBOL:automatic]
synonym: "urethra gland" EXACT []
xref: FMA:19683
xref: MA:0001688
is_a: UBERON:0002365 ! implied link automatically realized ! exocrine gland
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0000057
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0001339
name: ischiocavernosus
alt_id: UBERON:FMA_19730-MA_0002330
def: "The ischiocavernosus muscle is a muscle just below the surface of the perineum, present in both men and women. [WP,unvetted]." [Wikipedia:Ischiocavernosus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:19730
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Ischiocavernosus-female.png/200px-Ischiocavernosus-female.png
xref: MA:0002330
xref: ncithesaurus:Ischiocavernosus
is_a: UBERON:0002379 ! perineal muscle
[Term]
id: UBERON:0001340
name: dorsal artery of penis
alt_id: UBERON:FMA_19795-MA_0001946
def: "The Dorsal Artery of the Penis ascends between the crus penis and the pubic symphysis, and, piercing the inferior fascia of the urogenital diaphragm, passes between the two layers of the suspensory ligament of the penis, and runs forward on the dorsum of the penis to the glans, where it divides into two branches, which supply the glans and prepuce. On the penis, it lies between the dorsal nerve and deep dorsal vein, the former being on its lateral side. It supplies the integument and fibrous sheath of the corpus cavernosum penis, sending branches through the sheath to anastomose with the deep artery of the penis. [WP,unvetted]." [Wikipedia:Dorsal_artery_of_penis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dorsal penile artery" EXACT []
synonym: "dorsal penis artery" EXACT []
xref: FMA:19795
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Gray1155.png/200px-Gray1155.png
xref: MA:0001946
is_a: UBERON:0001637 ! artery
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000989 ! penis
[Term]
id: UBERON:0001341
name: lesser sac
alt_id: UBERON:FMA_19800-MA_0000445
def: "The lesser sac, also known as the omental bursa, is the cavity in the abdomen that is formed by the lesser and greater omentum. Usually found in mammals, it is connected with the greater sac via the epiploic foramen (also known as the Foramen of Winslow). In mammals, it is not uncommon for the lesser sac to contain considerable amounts of fat. In human anatomy, the wall of the stomach, pancreas and splenic artery are a part of the wall of the lesser sac. If these structures rupture they may leak into the lesser sac. For the stomach, which lies anterior to the omental bursa, the rupture must be on the posterior side; if it were anteriorly located, the leak would collect in the greater sac. The lesser sac is embryologically formed from an infolding of the greater omentum. The open end of the infolding, known as the epiploic foramen, is usually proximal to the stomach. [WP,unvetted]." [Wikipedia:Lesser_sac]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "omental bursa" EXACT []
xref: EHDAA:2335
xref: EHDAA2:0001296
xref: FMA:19800
xref: HOG:0000458
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Peritoneum.svg/200px-Peritoneum.svg.png
xref: MA:0000445
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001179 ! peritoneal cavity
[Term]
id: UBERON:0001342
name: mesovarium
alt_id: UBERON:FMA_19815-ZFA_0000333
def: "The mesovarium is the portion of the broad ligament of the uterus that covers the ovaries. At first the mesonephros and genital ridge are suspended by a common mesentery, but as the embryo grows the genital ridge gradually becomes pinched off from the mesonephros, with which it is at first continuous, though it still remains connected to the remnant of this body by a fold of peritoneum. In the male this is the mesorchium, and in the female, this is the mesovarium. [WP,unvetted]." [Wikipedia:Mesovarium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:19815
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e7/Gray1111.png/200px-Gray1111.png
xref: TAO:0000333
xref: ZFA:0000333
is_a: UBERON:0002095 ! mesentery
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000992 ! ovary
relationship: part_of UBERON:0002095 ! mesentery
[Term]
id: UBERON:0001343
name: seminiferous tubule of testis
alt_id: UBERON:FMA_19825-XAO_0003088
def: "Seminiferous tubules are located in the testicles, and are the specific location of meiosis, and the subsequent creation of gametes, namely spermatozoa. The epithelium of the tubule consists of sustentacular or Sertoli cells, which are tall, columnar type cells that line the tubule. In between the Sertoli cells are spermatogenic cells, which differentiate through meiosis to sperm cells. There are two types: convoluted and straight. convuluted towards the lateral side and straight as the tubule comes medially to form ducts which will exit the testis. [WP,unvetted]." [Wikipedia:Seminiferous_tubule]
subset: uberon_slim
synonym: "seminiferous tubule" EXACT []
xref: BTO:0001235
xref: EFO:0001404
xref: FMA:19825
xref: GAID:400
xref: HOG:0001363
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6a/Gray1145.png/200px-Gray1145.png
xref: MA:0000412
xref: MAT:0000503
xref: ncithesaurus:Seminiferous_Tubule
xref: XAO:0003088
is_a: UBERON:0000058 ! duct
is_a: UBERON:0005904 ! implied link automatically realized ! duct of male reproductive system
relationship: part_of UBERON:0000473 ! testis
[Term]
id: UBERON:0001344
name: epithelium of vagina
alt_id: UBERON:FMA_19978-MA_0001730
def: "the epithelial layer of the vagina." [MP:0001140]
comment: FMA: nonkeratinizing stratified squamous epithelium; BTO: Vaginal epithelium is stratified squamous epithelium having a thickness of 15-200 microns; MA has single subclass
synonym: "epithelial tissue of vagina" EXACT [OBOL:automatic]
synonym: "vagina epithelial tissue" EXACT [OBOL:automatic]
synonym: "vagina epithelium" EXACT []
synonym: "vaginal epithelium" EXACT []
xref: BTO:0000422
xref: EMAPA:30991
xref: FMA:19978
xref: MA:0001730
xref: ncithesaurus:Vaginal_Epithelium
is_a: UBERON:0000486 ! multilaminar epithelium
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000996
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000996 ! vagina
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0001345
name: fornix
alt_id: UBERON:FMA_19985-MA_0002747
def: "This class was obsoleted." [Wikipedia:Fornix]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
is_obsolete: true
consider: UBERON:0000051
consider: UBERON:0000052
[Term]
id: UBERON:0001346
name: hymen of vagina
alt_id: UBERON:FMA_20005-MA_0002465
comment: This class was created automatically from a combination of ontologies
synonym: "hymen vaginae" EXACT []
synonym: "vaginal hymen" EXACT []
xref: FMA:20005
xref: MA:0002465
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0001347
name: white adipose tissue
alt_id: UBERON:FMA_20117-MA_0000058-MIAA_0000199
def: "Adipose tissue, cells of which contain a single large lipid droplet." [Wikipedia:White_adipose_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adipocytus unigutturalis" EXACT []
synonym: "textus adiposus albus" EXACT []
synonym: "unilocular adipose tissue" EXACT []
synonym: "white fat" EXACT []
xref: BTO:0001456
xref: EFO:0000813
xref: FMA:20117
xref: MA:0000058
xref: MAT:0000199
xref: MIAA:0000199
xref: ncithesaurus:White_Adipose_Tissue
is_a: UBERON:0001013 ! adipose tissue
[Term]
id: UBERON:0001348
name: brown adipose tissue
alt_id: UBERON:FMA_20118-MA_0000057-MIAA_0000198
def: "Adipose tissue, cells of which contain multiple small lipid droplets." [Wikipedia:Brown_adipose_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adipocytus multigutturalis" EXACT []
synonym: "brown fat" EXACT []
synonym: "multilocular adipose tissue" EXACT []
synonym: "textus adiposus fuscus" EXACT []
xref: BTO:0000156
xref: EFO:0000812
xref: FMA:20118
xref: GAID:921
xref: MA:0000057
xref: MAT:0000198
xref: MIAA:0000198
xref: ncithesaurus:Brown_Adipose_Tissue
is_a: UBERON:0001013 ! adipose tissue
[Term]
id: UBERON:0001349
name: vestibule
alt_id: UBERON:FMA_20192-XAO_0000199
def: "Anatomical cavity that connects an organ cavity, organ cavity subdivision or cavity of body part subdivision to the exterior, completely or partially surrounded by organs or organ parts that are lined by epithelium. Examples: preputial cavity, vestibule of vagina." [Wikipedia:Vestibule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:20192
xref: ncithesaurus:Vestibule
is_a: UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0001350
name: coccyx
alt_id: UBERON:FMA_20229-MA_0000696
def: "In humans: The coccyx, commonly referred to as the tailbone, is the final segment of the human vertebral column. Comprising three to five separate or fused vertebrae (the coccygeal vertebrae) below the sacrum, it is attached to the sacrum by a fibrocartilaginous joint, the sacrococcygeal symphysis, which permits limited movement between the sacrum and the coccyx. The term coccyx comes originally from the Greek language and means 'cuckoo', referring to the curved shape of a cuckoo's beak when viewed from the side. [WP,unvetted]." [Wikipedia:Coccyx]
comment: In MA the subclass hierarchy is cocc V is_a caud V is_a tail bone
subset: uberon_slim
synonym: "Coccyx [coccygeal vertebrae I-IV]" EXACT []
synonym: "tail bone" EXACT []
synonym: "tailbone" EXACT []
xref: AAO:0000731
xref: FMA:20229
xref: GAID:239
xref: galen:Coccyx
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Gray100.png/200px-Gray100.png
xref: MA:0000696
xref: ncithesaurus:Coccyx
xref: OpenCyc:Mx4rv1XqHJwpEbGdrcN5Y29ycA
is_a: UBERON:0001474 ! bone
is_a: UBERON:0004247 ! implied link automatically realized ! back bone
relationship: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0001351
name: lacrimal sac
alt_id: UBERON:FMA_20289-MA_0001298
def: "The lacrimal sac is the upper dilated end of the nasolacrimal duct, and is lodged in a deep groove formed by the lacrimal bone and frontal process of the maxilla. It connects the lacrimal canaliculi, which drain tears from the eye's surface, and the nasolacrimal duct, which conveys this fluid into the nasal cavity. This is mainly for high amounts of tears, in which the lacrimal sac pumps inward and outward driven by the orbicularis muscle during blinking. It is oval in form and measures from 12 to 15 mm. in length; its upper end is closed and rounded; its lower is continued into the nasolacrimal duct. Its superficial surface is covered by a fibrous expansion derived from the medial palpebral ligament, and its deep surface is crossed by the lacrimal part of the Orbicularis oculi, which is attached to the crest on the lacrimal bone. Like the nasolacrimal duct, the sac is lined by stratified columnar epithelium with mucus-secreting goblet cells, with surrounding connective tissue. [WP,unvetted]." [Wikipedia:Lacrimal_sac]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:20289
xref: MA:0001298
xref: ncithesaurus:Lacrimal_Sac
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001850 ! lacrimal duct
[Term]
id: UBERON:0001352
name: external acoustic meatus
alt_id: UBERON:FMA_20290-MA_0000260
def: "A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter." [Wikipedia:External_acoustic_meatus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "auditory canal" EXACT []
synonym: "ear canal" EXACT [Wikipedia:Ear_canal]
synonym: "external acoustic tube" EXACT [FMA:61734]
synonym: "external auditory canal" EXACT []
synonym: "external auditory meatus" RELATED []
xref: EHDAA:8975
xref: EHDAA2:0000460
xref: FMA:61734
xref: GAID:864
xref: galen:ExternalAuditoryMeatus
xref: HOG:0000977
xref: MA:0000260
xref: ncithesaurus:External_Acoustic_Meatus
xref: OpenCyc:Mx4rvli-nZwpEbGdrcN5Y29ycA
is_a: UBERON:0000464 ! anatomical space
relationship: connects UBERON:0001691 ! external ear
relationship: connects UBERON:0001756 ! middle ear
relationship: develops_from UBERON:0005872 ! 1st arch branchial groove
[Term]
id: UBERON:0001353
name: anal region
alt_id: UBERON:FMA_20347-MA_0000329
def: "The anal triangle is the posterior part of the perineum. It contains the anal canal. [WP,unvetted]." [Wikipedia:Anal_triangle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anal part of perineum" EXACT []
synonym: "anal triangle" EXACT []
xref: EFO:0000847
xref: EHDAA:2931
xref: EHDAA2:0000122
xref: FMA:20347
xref: HOG:0000395
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Gray408.png/200px-Gray408.png
xref: MA:0000329
xref: MAT:0000042
xref: MIAA:0000042
xref: ncithesaurus:Anal_Region
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001354
name: inferior epigastric artery
alt_id: UBERON:FMA_20686-MA_0001978
def: "In human anatomy, inferior epigastric artery refers to the artery that arises from the external iliac artery and anastomoses with the superior epigastric artery. Along its course, it is accompanied by a similarly named vein, the inferior epigastric vein. [WP,unvetted]." [Wikipedia:Inferior_epigastric_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:20686
xref: MA:0001978
xref: ncithesaurus:Inferior_Epigastric_Artery
xref: OpenCyc:Mx4rdBvQc6gOEdudWQACs5b6Bw
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0001308 ! external iliac artery
[Term]
id: UBERON:0001355
name: deep femoral artery
alt_id: UBERON:FMA_20741-MA_0002027
def: "The profunda femoris artery (also known as the deep femoral artery, or the deep artery of the thigh) is a branch of the femoral artery that, as its name suggests, travels more deeply (posteriorly) than the rest of the femoral artery. [WP,unvetted]." [Wikipedia:Deep_femoral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arteria profunda femoris" EXACT []
synonym: "profunda femoris artery" EXACT []
xref: FMA:20741
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray548.png/200px-Gray548.png
xref: MA:0002027
xref: ncithesaurus:Deep_Femoral_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001356
name: medial circumflex femoral artery
alt_id: UBERON:FMA_20799-MA_0001996
def: "The medial circumflex femoral artery (internal circumflex artery, medial femoral circumflex artery) is an artery in the upper thigh that helps supply blood to the neck of the femur. [WP,unvetted]." [Wikipedia:Medial_circumflex_femoral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "medial femoral circumflex artery" EXACT []
xref: FMA:20799
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Circumflex_femoral_arteries.png/200px-Circumflex_femoral_arteries.png
xref: MA:0001996
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001357
name: inferior rectal artery
alt_id: UBERON:FMA_20824-MA_0001979
def: "The inferior rectal artery (inferior hemorrhoidal artery) is an artery that supplies blood to the lower half of the anal canal. [WP,unvetted]." [Wikipedia:Inferior_rectal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "inferior hemorrhoidal artery" EXACT []
xref: FMA:20824
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray542.png/200px-Gray542.png
xref: MA:0001979
xref: ncithesaurus:Inferior_Rectal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001358
name: perineal artery
alt_id: UBERON:FMA_20836-MA_0002017
def: "The perineal artery (superficial perineal artery) arises from the internal pudendal artery, and turns upward, crossing either over or under the Transversus perinæi superficialis, and runs forward, parallel to the pubic arch, in the interspace between the Bulbocavernosus and Ischiocavernosus, both of which it supplies, and finally divides into several posterior scrotal branches which are distributed to the skin and dartos tunic of the scrotum. As it crosses the Transversus perinæi superficialis it gives off the transverse perineal artery which runs transversely on the cutaneous surface of the muscle, and anastomoses with the corresponding vessel of the opposite side and with the perineal and inferior hemorrhoidal arteries. It supplies the Transversus perinæi superficialis and the structures between the anus and the urethral bulb. [WP,unvetted]." [Wikipedia:Perineal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:20836
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray542.png/200px-Gray542.png
xref: MA:0002017
xref: ncithesaurus:Perineal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001359
name: cerebrospinal fluid
alt_id: UBERON:FMA_20935-MA_0002503
def: "Transudate contained in the subarachnoid space." [Wikipedia:Cerebrospinal_fluid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CSF" EXACT []
xref: BTO:0000237
xref: EFO:0000329
xref: ENVO:02000029
xref: FMA:20935
xref: GAID:1181
xref: HOG:0001278
xref: MA:0002503
xref: MAT:0000499
xref: ncithesaurus:Cerebrospinal_Fluid
xref: NIF_GrossAnatomy:birnlex_1798
xref: ZFA:0001626
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001360
name: deep circumflex iliac vein
alt_id: UBERON:FMA_21182-MA_0002099
def: "The deep circumflex iliac vein is formed by the union of the venæ comitantes of the deep iliac circumflex artery, and joins the external iliac vein about 2 cm. above the inguinal ligament. It also receives small tributary branches from the thoracoepigastric vein [WP,unvetted]." [Wikipedia:Deep_circumflex_iliac_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "deep iliac circumflex vein" EXACT []
synonym: "vena circumflexa iliaca profunda" EXACT []
xref: FMA:21182
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png
xref: MA:0002099
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001361
name: femoral vein
alt_id: UBERON:FMA_21185-MA_0002118
def: "In the human body, the femoral vein is a blood vessel that accompanies the femoral artery in the femoral sheath. It begins at the adductor canal (also known as Hunter's canal) and is a continuation of the popliteal vein. It ends at the inferior margin of the inguinal ligament, where it becomes the external iliac vein. [WP,unvetted]." [Wikipedia:Femoral_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:21185
xref: GAID:533
xref: galen:FemoralVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Femoral_triangle.gif/200px-Femoral_triangle.gif
xref: MA:0002118
xref: ncithesaurus:Femoral_Vein
xref: OpenCyc:Mx4rwFXTLJwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
relationship: part_of UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001362
name: perineal vein
alt_id: UBERON:FMA_21246-MA_0002193
comment: This class was created automatically from a combination of ontologies
xref: FMA:21246
xref: MA:0002193
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001363
name: great saphenous vein
alt_id: UBERON:FMA_21376-MA_0002216
def: "The great saphenous vein (GSV), also greater saphenous vein, is the large (subcutaneous) superficial vein of the leg and thigh. The terms 'safaina' (Greek) and 'el safin' (Arabic) have both been claimed as the origin for the word 'saphenous'. [WP,unvetted]." [Wikipedia:Great_saphenous_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "greater saphenous vein" EXACT []
synonym: "long saphenous vein" EXACT []
xref: BTO:0003271
xref: FMA:21376
xref: galen:GreaterSaphenousVein
xref: galen:GreatSaphenousVein
xref: MA:0002216
xref: ncithesaurus:Long_Saphenous_Vein
is_a: UBERON:0001638 ! vein
relationship: part_of UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001364
name: circumpennate
alt_id: UBERON:FMA_21431-ZFA_0000271
synonym: "radial" EXACT []
synonym: "radials" RELATED []
xref: AAO:0000790
xref: FMA:21431
xref: OpenCyc:Mx4rvVjBSZwpEbGdrcN5Y29ycA
xref: TAO:0000271
xref: ZFA:0000271
is_obsolete: true
[Term]
id: UBERON:0001365
name: sacro-iliac joint
alt_id: UBERON:FMA_21440-MA_0001506
def: "." [Wikipedia:Sacro-iliac_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "articulatio sacro-iliaca" EXACT []
synonym: "sacroiliac joint" EXACT []
xref: FMA:21440
xref: GAID:268
xref: MA:0001506
xref: ncithesaurus:Sacroiliac_Joint
is_a: UBERON:0002217 ! synovial joint
[Term]
id: UBERON:0001366
name: parietal peritoneum
alt_id: UBERON:0004459
alt_id: UBERON:FMA_21451-ZFA_0005131
def: "The peritoneum that lines the walls of the peritoneal cavity." [Wikipedia:Parietal_peritoneum, ZFIN:curator]
comment: fix coordinated with ZFA
subset: uberon_slim
synonym: "peritoneal cavity lining" EXACT [MA:0000449]
xref: FMA:21451
xref: HOG:0001527
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1040.png/200px-Gray1040.png
xref: MA:0000449
xref: TAO:0005131
xref: ZFA:0005131
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: bounds UBERON:0001179 ! peritoneal cavity
relationship: part_of UBERON:0002358 ! peritoneum
relationship: surrounds UBERON:0003684 ! abdominal cavity
[Term]
id: UBERON:0001367
name: external anal sphincter
alt_id: UBERON:FMA_21930-MA_0001531
def: "The Sphincter ani externus (external anal sphincter) is a flat plane of muscular fibers, elliptical in shape and intimately adherent to the integument surrounding the margin of the anus. [WP,unvetted]." [Wikipedia:External_anal_sphincter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "external sphincter ani" EXACT []
synonym: "sphincter ani externus" RELATED []
xref: FMA:21930
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Anorectum.gif/200px-Anorectum.gif
xref: MA:0001531
xref: ncithesaurus:External_Anal_Sphincter
is_a: UBERON:0004590 ! sphincter muscle
is_a: UBERON:0004916 ! implied link automatically realized ! anal sphincter
relationship: part_of UBERON:0001353 ! anal region
[Term]
id: UBERON:0001368
name: obturator externus
alt_id: UBERON:FMA_22299-MA_0002347
def: "The obturator externus muscle is a flat, triangular muscle, which covers the outer surface of the anterior wall of the pelvis. It is sometimes considered part of the medial compartment of thigh, and sometimes considered part of the gluteal region. [WP,unvetted]." [Wikipedia:Obturator_externus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "external obturator" EXACT []
xref: FMA:22299
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Posterior_Hip_Muscles_1.PNG/200px-Posterior_Hip_Muscles_1.PNG
xref: MA:0002347
is_a: UBERON:0002000 ! gluteal muscle
[Term]
id: UBERON:0001369
name: iliacus
alt_id: UBERON:FMA_22310-MA_0002318
def: "The iliacus is a flat, triangular muscle, which fills the iliac fossa. [WP,unvetted]." [Wikipedia:Iliacus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior muscle of pelvic girdle" EXACT []
xref: FMA:22310
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: MA:0002318
xref: ncithesaurus:Iliacus
is_a: UBERON:0001497 ! muscle of pelvic girdle
[Term]
id: UBERON:0001370
name: gluteus maximus
alt_id: UBERON:FMA_22314-MA_0002309
def: "The gluteus maximus (or glutæus maximus) is the largest and most superficial of the three gluteal muscles. It makes up a large portion of the shape and appearance of the buttocks. It is a broad and thick fleshy mass of a quadrilateral shape, and forms the prominence of the nates. Its large size is one of the most characteristic features of the muscular system in humans, connected as it is with the power of maintaining the trunk in the erect posture. The muscle is remarkably coarse in structure, being made up of fasciculi lying parallel with one another and collected together into large bundles separated by fibrous septa. [WP,unvetted]." [Wikipedia:Gluteus_maximus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gluteus superficialis" RELATED []
synonym: "m.gluteus maximus" EXACT []
xref: FMA:22314
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Posterior_Hip_Muscles_3.PNG/200px-Posterior_Hip_Muscles_3.PNG
xref: MA:0002309
xref: ncithesaurus:Gluteus_Maximus
xref: OpenCyc:Mx4rvVjdMZwpEbGdrcN5Y29ycA
is_a: UBERON:0002000 ! gluteal muscle
[Term]
id: UBERON:0001371
name: gluteus medius
alt_id: UBERON:FMA_22315-MA_0002310
def: "The gluteus medius (or glutæus medius), one of the three gluteal muscles, is a broad, thick, radiating muscle, situated on the outer surface of the pelvis. Its posterior third is covered by the gluteus maximus, its anterior two-thirds by the gluteal aponeurosis, which separates it from the superficial fascia and integument. [WP,unvetted]." [Wikipedia:Gluteus_medius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22315
xref: galen:GluteusMedius
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Posterior_Hip_Muscles_3.PNG/200px-Posterior_Hip_Muscles_3.PNG
xref: MA:0002310
xref: ncithesaurus:Gluteus_Medius
is_a: UBERON:0002000 ! gluteal muscle
[Term]
id: UBERON:0001372
name: psoas minor
alt_id: UBERON:FMA_22350-MA_0002359
def: "The psoas minor is a long, slender skeletal muscle that, when present, is placed in front of the psoas major muscle. It is absent in 40% of individuals. [WP,unvetted]." [Wikipedia:Psoas_minor]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "psoas minor muscle" EXACT []
xref: BTO:0001878
xref: FMA:22350
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b2/Gray430.png/200px-Gray430.png
xref: MA:0002359
xref: ncithesaurus:Psoas_Minor
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001373
name: sartorius
alt_id: UBERON:FMA_22353-MA_0002368
def: "." [Wikipedia:Sartorius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001215
xref: EHDAA:10583
xref: EHDAA2:0001776
xref: FMA:22353
xref: galen:Sartorius
xref: HOG:0001192
xref: MA:0002368
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001374
name: biceps femoris
alt_id: UBERON:FMA_22356-MA_0002270
def: "The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]." [Wikipedia:Biceps_femoris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003418
xref: EFO:0001418
xref: FMA:22356
xref: galen:BicepsFemoris
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Biceps_femoris_muscle_long_head.PNG/200px-Biceps_femoris_muscle_long_head.PNG
xref: MA:0002270
xref: ncithesaurus:Biceps_Femoris
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001375
name: semitendinosus
alt_id: UBERON:FMA_22357-MA_0002375
def: "The semitendinosus is a muscle in the back of the thigh; it is one of the hamstrings. [WP,unvetted]." [Wikipedia:Semitendinosus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "semitendinosus muscle" EXACT []
xref: BTO:0001236
xref: FMA:22357
xref: galen:Semitendinosus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Semitendinosus_muscle.PNG/200px-Semitendinosus_muscle.PNG
xref: MA:0002375
xref: ncithesaurus:Semitendinosus
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001376
name: tensor fasciae latae
alt_id: UBERON:FMA_22423-MA_0002391
def: "The tensor fasciae latae or tensor fasciæ latæ is a muscle of the thigh. [WP,unvetted]." [Wikipedia:Tensor_fasciae_latae]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "tensor fasciae lata" EXACT []
synonym: "tensor of fascia lata" EXACT []
xref: FMA:22423
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: MA:0002391
xref: ncithesaurus:Tensor_Fasciae_Lata
is_a: UBERON:0002000 ! gluteal muscle
[Term]
id: UBERON:0001377
name: quadriceps femoris
alt_id: UBERON:FMA_22428-MA_0002363
def: "The quadriceps femoris, also called simply the quadriceps, quadriceps extensor, quads, is a large muscle group that includes the four prevailing muscles on the front of the thigh. It is the great extensor muscle of the knee, forming a large fleshy mass which covers the front and sides of the femur. It is the strongest and leanest muscle in the human body. It is subdivided into four separate portions or 'heads', which have received distinctive names: Rectus femoris occupies the middle of the thigh, covering most of the other three quadriceps muscles. It originates on the ilium. It is named from its straight course. The other three lie deep to rectus femoris and originate from the body of the femur, which they cover from the trochanters to the condyles: Vastus lateralis is on the lateral side of the femur (i.e. on the outer side of the thigh). Vastus medialis is on the medial side of the femur (i.e. on the inner part thigh). Vastus intermedius lies between vastus lateralis and vastus medialis on the front of the femur (i.e. on the top or front of the thigh). All four parts of the quadriceps muscle attach to the patella (knee cap) via the quadriceps tendon. The quadriceps is also involved in Lombard's Paradox. The proper plural form of the adjective quadriceps is quadricipes, a form not in general use; instead, quadriceps is used in both singular and plural (i.e. , when referring to both legs). The form quadricep [sic], though common even in professional contexts, is incorrect. The error may derive from a mistaken belief that quadriceps is a plural noun (rather than an adjective in the singular), since English typically forms its plurals with the addition of the letter s to the end of a word stem. [WP,unvetted]." [Wikipedia:Quadriceps_femoris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "quadriceps" EXACT []
xref: BTO:0001149
xref: EFO:0001938
xref: EHDAA:8299
xref: EHDAA2:0001583
xref: FMA:22428
xref: galen:QuadricepsFemoris
xref: HOG:0000828
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg
xref: MA:0002363
xref: OpenCyc:Mx4rvVjd-JwpEbGdrcN5Y29ycA
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001378
name: rectus femoris
alt_id: UBERON:FMA_22430-MA_0002365
def: "The Rectus femoris muscle is one of the four quadriceps muscles of the human body. (The others are the vastus medialis, the vastus intermedius, and the vastus lateralis. All four combine to form the quadriceps tendon, which inserts into the patella and continues as the patellar ligament. ) The Rectus femoris is situated in the middle of the front of the thigh; it is fusiform in shape, and its superficial fibers are arranged in a bipenniform manner, the deep fibers running straight down to the deep aponeurosis. [WP,unvetted]." [Wikipedia:Rectus_femoris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "musculus rectos femoris" EXACT []
xref: BTO:0001564
xref: FMA:22430
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Rectus_femoris.png/200px-Rectus_femoris.png
xref: MA:0002365
xref: ncithesaurus:Rectus_Femoris
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0001377 ! quadriceps femoris
[Term]
id: UBERON:0001379
name: vastus lateralis
alt_id: UBERON:FMA_22431-MA_0002402
def: "The Vastus lateralis (Vastus externus) is the largest part of the Quadriceps femoris. It arises by a broad aponeurosis, which is attached to the upper part of the intertrochanteric line, to the anterior and inferior borders of the greater trochanter, to the lateral lip of the gluteal tuberosity, and to the upper half of the lateral lip of the linea aspera; this aponeurosis covers the upper three-fourths of the muscle, and from its deep surface many fibers take origin. A few additional fibers arise from the tendon of the Glutæus maximus, and from the lateral intermuscular septum between the Vastus lateralis and short head of the Biceps femoris. The fibers form a large fleshy mass, which is attached to a strong aponeurosis, placed on the deep surface of the lower part of the muscle: this aponeurosis becomes contracted and thickened into a flat tendon inserted into the lateral border of the patella, blending with the Quadriceps femoris tendon, and giving an expansion to the capsule of the knee-joint. [WP,unvetted]." [Wikipedia:Vastus_lateralis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001563
xref: EFO:0001937
xref: FMA:22431
xref: galen:VastusLateralis
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg
xref: MA:0002402
xref: ncithesaurus:Vastus_Lateralis
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0001377 ! quadriceps femoris
[Term]
id: UBERON:0001380
name: vastus medialis
alt_id: UBERON:FMA_22432-MA_0002403
def: "The vastus medialis, often called the 'teardrop' muscle, is a medially located muscle of the quadriceps. [WP,unvetted]." [Wikipedia:Vastus_medialis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22432
xref: galen:VastusMedialis
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/38/Vastus_medialis.png/200px-Vastus_medialis.png
xref: MA:0002403
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0001377 ! quadriceps femoris
[Term]
id: UBERON:0001381
name: semimembranosus
alt_id: UBERON:FMA_22438-MA_0002371
def: "The semimembranosus is a muscle in the back of the thigh. It is the most medial of the three hamstring muscles. [WP,unvetted]." [Wikipedia:Semimembranosus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003177
xref: FMA:22438
xref: galen:Semimembranosus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Semimembranosus_muscle.PNG/200px-Semimembranosus_muscle.PNG
xref: MA:0002371
xref: ncithesaurus:Semimembranosus
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001382
name: pectineus
alt_id: UBERON:FMA_22440-MA_0002353
def: "The pectineus muscle is a flat, quadrangular muscle, situated at the anterior part of the upper and medial aspect of the thigh. It can be classified in the medial compartment of thigh (when the function is emphasized) or the anterior compartment of thigh (when the nerve is emphasized). [WP,unvetted]." [Wikipedia:Pectineus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22440
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Anterior_Hip_Muscles_2.PNG/200px-Anterior_Hip_Muscles_2.PNG
xref: MA:0002353
xref: ncithesaurus:Pectineus
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001383
name: muscle of leg
alt_id: UBERON:FMA_22471-MA_0000672
def: "." [Wikipedia:Leg_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "leg muscle" EXACT []
synonym: "leg muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of leg" EXACT [OBOL:automatic]
xref: BTO:0000722
xref: FMA:22471
xref: MA:0000672
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0000978
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001384
name: primary motor cortex
alt_id: UBERON:FMA_224854-MA_0000907
def: "a brain region that in humans is located in the posterior portion of the frontal lobe. It works in association with pre-motor areas to plan and execute movements. M1 contains large neurons known as Betz cells which send long axons down the spinal cord to synapse onto alpha motor neurons which connect to the muscles. Pre-motor areas are involved in planning actions (in concert with the basal ganglia) and refining movements based upon sensory input (this requires the cerebellum). The human primary motor cortex is located in the dorsal part of the precentral gyrus and the anterior bank of the central sulcus. The precentral gyrus is in front of the postcentral gyrus from which it is separated by the central sulcus. Its anterior border is the precentral sulcus, while inferiorly it borders to the lateral fissure (Sylvian fissure). Medially, it is contiguous with the paracentral lobule." [Wikipedia:Primary_motor_cortex]
comment: TODO: in MA this is asserted to be part_of BOTH frontal and parietal cortex. FMA makes no commitment beyond cerebral cortex. Wikipedia says frontal lobe. Check if species difference or difference in definition
subset: uberon_slim
xref: EFO:0002472
xref: FMA:224854
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Ba4.png/200px-Ba4.png
xref: MA:0000907
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0001870 ! frontal cortex
relationship: part_of UBERON:0001872 ! parietal lobe
[Term]
id: UBERON:0001385
name: tibialis anterior
alt_id: UBERON:FMA_22532-MA_0002395
def: "In human anatomy, the tibialis anterior is a muscle that originates in the upper two-thirds of the lateral surface of the tibia and inserts into the medial cuneiform and first metatarsal bones of the foot. Its acts to invert the foot. It is situated on the lateral side of the tibia; it is thick and fleshy above, tendinous below. This muscle overlaps the anterior tibial vessels and deep peroneal nerve in the upper part of the leg. [WP,unvetted]." [Wikipedia:Tibialis_anterior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "tibilais cranialis" EXACT []
xref: BTO:0001382
xref: FMA:22532
xref: galen:TibialisAnterior
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray1240.png/200px-Gray1240.png
xref: MA:0002395
is_a: UBERON:0001383 ! muscle of leg
[Term]
id: UBERON:0001386
name: extensor digitorum longus
alt_id: UBERON:FMA_22534-MA_0002295
def: "The Extensor digitorum longus is a pennate muscle, situated at the lateral part of the front of the leg. [WP,unvetted]." [Wikipedia:Extensor_digitorum_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000436
xref: FMA:22534
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1241.png/200px-Gray1241.png
xref: MA:0002295
xref: ncithesaurus:Extensor_Digitorum_Longus
is_a: UBERON:0000311 ! extensor muscle
is_a: UBERON:0001383 ! implied link automatically realized ! muscle of leg
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001387
name: fibularis longus
alt_id: UBERON:FMA_22539-MA_0002356
def: "In human anatomy, the peroneus longus (also known as fibularis longus) is a superficial muscle in the lateral compartment of the leg, and acts to evert and plantar flex the ankle. It is situated at the upper part of the lateral side of the leg, and is the most superficial of the three peroneus muscles. It is innervated by the superficial fibular nerve (superficial peroneal nerve). [WP,unvetted]." [Wikipedia:Fibularis_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "peroneus longus" EXACT []
xref: FMA:22539
xref: galen:PeroneusLongus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray1240.png/200px-Gray1240.png
xref: MA:0002356
xref: ncithesaurus:Peroneus_Longus
is_a: UBERON:0001383 ! muscle of leg
[Term]
id: UBERON:0001388
name: gastrocnemius
alt_id: UBERON:FMA_22541-MA_0002306
def: "In humans, the gastrocnemius muscle is a very powerful superficial muscle that is in the back part of the lower leg and also called the calf. It runs from its two heads just above the knee to the heel, and is involved in standing, walking, running and jumping. Along with the soleus muscle it forms the calf muscle. [WP,unvetted]." [Wikipedia:Gastrocnemius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "m.gastrocnemius" EXACT []
xref: BTO:0000506
xref: EFO:0001413
xref: EHDAA:8293
xref: EHDAA2:0000701
xref: FMA:22541
xref: galen:Gastrocnemius
xref: HOG:0001193
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8e/Gastrocnemius.png/200px-Gastrocnemius.png
xref: MA:0002306
is_a: UBERON:0001383 ! muscle of leg
relationship: part_of UBERON:0001665 ! triceps surae
[Term]
id: UBERON:0001389
name: soleus
alt_id: UBERON:FMA_22542-MA_0002424
def: "a powerful muscle in the back part of the lower leg (the calf). It runs from just below the knee to the heel, and is involved in standing and walking. It is closely connected to the gastrocnemius muscle and some anatomists consider them to be a single muscle, the triceps surae. Its name is derived from the solefish whose shape it resembles. The soleus is located in the superficial posterior compartment of the leg. Not all mammals have a soleus muscle; one familiar species that lacks the soleus is the dog." [Wikipedia:Soleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001265
xref: FMA:22542
xref: galen:Soleus
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg
xref: MA:0002424
xref: ncithesaurus:Soleus
is_a: UBERON:0001383 ! muscle of leg
relationship: part_of UBERON:0001665 ! triceps surae
[Term]
id: UBERON:0001390
name: sural artery
alt_id: UBERON:FMA_22570-MA_0002058
def: "The sural arteries (inferior muscular arteries) are two large branches, which are distributed to the Gastrocnemius, Soleus, and Plantaris. The term applies to any of four or five arteries arising from the popliteal artery, with distribution to the muscles and integument of the calf, and with anastomoses to the posterior tibial, medial and lateral inferior genicular arteries. [WP,unvetted]." [Wikipedia:Sural_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22570
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/60/Gray551.png/200px-Gray551.png
xref: MA:0002058
xref: ncithesaurus:External_Sural_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001391
name: popliteus
alt_id: UBERON:FMA_22590-MA_0002554
def: "The popliteus muscle in the leg is used to unlock the knee by laterally rotating the femur on the tibia during a closed chain movement (such as one with the foot in contact with the ground). [WP,unvetted]." [Wikipedia:Popliteus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "m.popliteus" EXACT []
synonym: "popliteal muscle" EXACT []
xref: FMA:22590
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/Gray439.png/200px-Gray439.png
xref: MA:0002554
is_a: UBERON:0001383 ! muscle of leg
[Term]
id: UBERON:0001392
name: flexor hallucis longus
alt_id: UBERON:FMA_22593-MA_0002301
def: "The Flexor hallucis longus muscle (FHL) is a muscle of the leg. It is one of the deep muscles of the posterior compartment of the leg. The other deep muscles of the leg are flexor digitorum longus and tibialis posterior. FHL is the largest and most powerful of these deep muscles. The Flexor hallucis longus is situated on the fibular side of the leg. It arises from the inferior two-thirds of the posterior surface of the body of the fibula, with the exception of 2.5 cm. at its lowest part; from the lower part of the interosseous membrane; from an intermuscular septum between it and the Peronæi, laterally, and from the fascia covering the Tibialis posterior, medially. The fibers pass obliquely downward and backward, and end in a tendon which occupies nearly the whole length of the posterior surface of the muscle. This tendon lies in a groove which crosses the posterior surface of the lower end of the tibia, the posterior surface of the talus, and the under surface of the sustentaculum tali of the calcaneus; in the sole of the foot it runs forward between the two heads of the Flexor hallucis brevis, and is inserted into the base of the last phalanx of the great toe. The grooves on the talus and calcaneus, which contain the tendon of the muscle, are converted by tendinous fibers into distinct canals, lined by a mucous sheath. As the tendon passes forward in the sole of the foot, it is situated above, and crosses from the lateral to the medial side of the tendon of the Flexor digitorum longus, to which it is connected by a fibrous slip. [WP,unvetted]." [Wikipedia:Flexor_hallucis_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22593
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png
xref: MA:0002301
xref: ncithesaurus:Flexor_Hallucis_Longus
is_a: UBERON:0000366 ! flexor muscle
is_a: UBERON:0001383 ! implied link automatically realized ! muscle of leg
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001393
name: auditory cortex
alt_id: UBERON:FMA_226221-MA_0000942
def: "The primary auditory cortex is the region of the brain that is responsible for processing of auditory information. [WP,unvetted]." [Wikipedia:Auditory_cortex]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:226221
xref: GAID:682
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Brodmann_41_42.png/200px-Brodmann_41_42.png
xref: MA:0000942
xref: ncithesaurus:Auditory_Cortex
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0001394
name: axillary artery
alt_id: UBERON:FMA_22654-MA_0002573
def: "In human anatomy, the axillary artery is a large blood vessel that conveys oxygenated blood to the lateral aspect of the thorax, the axilla (armpit) and the upper limb. Its origin is at the lateral margin of the first rib, before which it is called the subclavian artery. After passing the lower margin of teres major it becomes the brachial artery. [WP,unvetted]." [Wikipedia:Axillary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "axillary part of trunk of subclavian artery" EXACT []
xref: FMA:22654
xref: GAID:473
xref: galen:AxillaryArtery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/88/Axillary_limits.PNG/200px-Axillary_limits.PNG
xref: MA:0002573
xref: ncithesaurus:Axillary_Artery
xref: OpenCyc:Mx4rwRh-vZwpEbGdrcN5Y29ycA
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001009 ! circulatory system
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001395
name: thoraco-acromial artery
alt_id: UBERON:FMA_22671-MA_0002064
def: "The thoracoacromial artery (acromiothoracic artery; thoracic axis) is a short trunk, which arises from the forepart of the axillary artery, its origin being generally overlapped by the upper edge of the Pectoralis minor. [WP,unvetted]." [Wikipedia:Thoraco-acromial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "acromiothoracic artery" EXACT []
synonym: "thoracoacromial artery" EXACT []
xref: FMA:22671
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Axillary_branches.PNG/200px-Axillary_branches.PNG
xref: MA:0002064
xref: ncithesaurus:Acromial_Thoracic_Artery
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003506 ! implied link automatically realized ! chest blood vessel
is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001396
name: lateral thoracic artery
alt_id: UBERON:FMA_22674-MA_0001989
def: "In human anatomy, the lateral thoracic artery (or external mammary artery) is a blood vessel that supplies oxygenated blood to the lateral structures of the thorax and breast. It originates from the axillary artery and follows the lower border of the Pectoralis minor muscle to the side of the chest, supplies the Serratus anterior muscle and the Pectoralis major muscle, and sends branches across the axilla to the axillary lymph nodes and Subscapularis muscle. It anastomoses with the internal thoracic artery, subscapular, and intercostal arteries, and with the pectoral branch of the thoracoacromial artery. In the female it supplies an external mammary branch which turns round the free edge of the Pectoralis major and supplies the breasts. [WP,unvetted]." [Wikipedia:Lateral_thoracic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "external mammary artery" EXACT []
xref: FMA:22674
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Axillary_branches.PNG/200px-Axillary_branches.PNG
xref: MA:0001989
xref: ncithesaurus:Lateral_Thoracic_Artery
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003506 ! implied link automatically realized ! chest blood vessel
is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001397
name: subscapular artery
alt_id: UBERON:FMA_22677-MA_0002050
def: "The subscapular artery, the largest branch of the axillary artery, arises at the lower border of the Subscapularis, which it follows to the inferior angle of the scapula, where it anastomoses with the lateral thoracic and intercostal arteries and with the descending branch of the transverse cervical, and ends in the neighboring muscles. About 4 cm. from its origin it gives off two branches, first the scapular circumflex artery and then the thoracodorsal artery. [WP,unvetted]." [Wikipedia:Subscapular_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22677
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Axillary_branches.PNG/200px-Axillary_branches.PNG
xref: MA:0002050
xref: ncithesaurus:Subscapular_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001398
name: brachial artery
alt_id: UBERON:FMA_22689-MA_0001921
def: "The brachial artery is the major blood vessel of the (upper) arm. It is the continuation of the axillary artery beyond the lower margin of teres major muscle. It continues down the ventral surface of the arm until it reaches the cubital fossa at the elbow. It then divides into the radial and ulnar arteries which run down the forearm. In some individuals, the bifurcation occurs much earlier and the ulnar and radial arteries extend through the upper arm. The pulse of the brachial artery is palpable on the anterior aspect of the elbow, medial to the tendon of the biceps, and, with the use of a stethoscope and sphygmomanometer (blood pressure cuff) often used to measure the blood pressure. The brachial artery is closely related to the median nerve; in proximal regions, the median nerve is immediately lateral to the brachial artery. Distally, the median nerve crosses the medial side of the brachial artery and lies anterior to the elbow joint. [WP,unvetted]." [Wikipedia:Brachial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "brachial part of trunk of subclavian artery" EXACT []
xref: FMA:22689
xref: GAID:475
xref: galen:BrachialArtery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray525.png/200px-Gray525.png
xref: MA:0001921
xref: ncithesaurus:Brachial_Artery
xref: OpenCyc:Mx4rwM-i5JwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001399
name: deep brachial artery
alt_id: UBERON:FMA_22695-MA_0002026
def: "The arteria profunda brachii (also known as deep artery of the arm and the deep brachial artery) is a large vessel which arises from the medial and back part of the brachial, just below the lower border of the Teres major. [WP,unvetted]." [Wikipedia:Deep_brachial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "profunda brachii artery" EXACT []
xref: FMA:22695
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray526.png/200px-Gray526.png
xref: MA:0002026
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0001400
name: iliocostalis thoracis
alt_id: UBERON:FMA_22703-MA_0002320
def: "The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior). [WP,unvetted]." [Wikipedia:Iliocostalis_thoracis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22703
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Iliostalis.png/200px-Iliostalis.png
xref: MA:0002320
is_a: UBERON:0002251 ! iliocostalis
[Term]
id: UBERON:0001401
name: longissimus thoracis
alt_id: UBERON:FMA_22709-MA_0002339
def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus_thoracis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001651
xref: FMA:22709
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png
xref: MA:0002339
xref: ncithesaurus:Longissimus_Thoracis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001402
name: longissimus cervicis
alt_id: UBERON:FMA_22711-MA_0002337
def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus_cervicis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001650
xref: FMA:22711
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png
xref: MA:0002337
xref: ncithesaurus:Longissimus_Cervicis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001403
name: longissimus capitis
alt_id: UBERON:FMA_22714-MA_0002336
def: "The longissimus is the muscle lateral to the semispinalis. It is the longest subdivision of the sacrospinalis that extends forward into the transverse processes of the posterior cervical vertebrae. [WP,unvetted]." [Wikipedia:Longissimus_capitis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001649
xref: FMA:22714
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Longissimus.png/200px-Longissimus.png
xref: MA:0002336
xref: ncithesaurus:Longissimus_Capitis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001404
name: radial artery
alt_id: UBERON:FMA_22730-MA_0002034
def: "In human anatomy, the radial artery is the main blood vessel, with oxygenated blood, of the lateral aspect of the forearm. [WP,unvetted]." [Wikipedia:Radial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22730
xref: GAID:506
xref: galen:RadialArtery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray1237.svg/200px-Gray1237.svg.png
xref: MA:0002034
xref: ncithesaurus:Radial_Artery
xref: OpenCyc:Mx4rvxzeR5wpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001405
name: spinalis thoracis
alt_id: UBERON:FMA_22765-MA_0002381
def: "The spinalis is the portion of the erector spinae, a bundle of muscles and tendons, located nearest to the spine. It is divided into three parts. [WP,unvetted]." [Wikipedia:Spinalis_thoracis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22765
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Spinalis.png/200px-Spinalis.png
xref: MA:0002381
xref: ncithesaurus:Spinalis_Thoracis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001406
name: ulnar artery
alt_id: UBERON:FMA_22796-MA_0002069
def: "The ulnar artery is the main blood vessel, with oxygenated blood, of the medial aspect of the forearm. It arises from the brachial artery and terminates in the superficial palmar arch, which joins with the superficial branch of the radial artery. It is palpable on the anterior and medial aspect of the wrist. Along its course, it is accompanied by a similarly named vein or veins, the ulnar vein or ulnar veins. The ulnar artery, the larger of the two terminal branches of the brachial, begins a little below the bend of the elbow in the cubital fossa, and, passing obliquely downward, reaches the ulnar side of the forearm at a point about midway between the elbow and the wrist. It then runs along the ulnar border to the wrist, crosses the transverse carpal ligament on the radial side of the pisiform bone, and immediately beyond this bone divides into two branches, which enter into the formation of the superficial and deep volar arches. [WP,unvetted]." [Wikipedia:Ulnar_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22796
xref: GAID:515
xref: galen:UlnarArtery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray1237.svg/200px-Gray1237.svg.png
xref: MA:0002069
xref: ncithesaurus:Ulnar_Artery
xref: OpenCyc:Mx4rwAF2PJwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001407
name: semispinalis thoracis
alt_id: UBERON:FMA_22828-MA_0002374
def: "The Semispinalis dorsi (or semispinalis thoracis) consists of thin, narrow, fleshy fasciculi, interposed between tendons of considerable length. It arises by a series of small tendons from the transverse processes of the sixth to the tenth thoracic vertebræ, and is inserted, by tendons, into the spinous processes of the upper four thoracic and lower two cervical vertebrae. [WP,unvetted]." [Wikipedia:Semispinalis_thoracis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22828
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Semispinalis.png/200px-Semispinalis.png
xref: MA:0002374
xref: ncithesaurus:Semispinalis_Thoracis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001408
name: semispinalis cervicis
alt_id: UBERON:FMA_22829-MA_0002373
def: "The semispinalis cervicis (semispinalis colli), thicker than the semispinalis dorsi, arises by a series of tendinous and fleshy fibers from the transverse processes of the upper five or six thoracic vertebræ, and is inserted into the cervical spinous processes, from the axis to the fifth inclusive. The fasciculus connected with the axis is the largest, and is chiefly muscular in structure. [WP,unvetted]." [Wikipedia:Semispinalis_cervicis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22829
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Gray384.png/200px-Gray384.png
xref: MA:0002373
xref: ncithesaurus:Semispinalis_Cervicis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001409
name: semispinalis capitis
alt_id: UBERON:FMA_22830-MA_0002372
def: "The Semispinalis capitis (Complexus) is situated at the upper and back part of the neck, deep to the Splenius, and medial to the Longissimus cervicis and capitis. It arises by a series of tendons from the tips of the transverse processes of the upper six or seven thoracic and the seventh cervical vertebræ, and from the articular processes of the three cervical above this. The tendons, uniting, form a broad muscle, which passes upward, and is inserted between the superior and inferior nuchal lines of the occipital bone. The medial part, usually more or less distinct from the remainder of the muscle, is frequently termed the Spinalis capitis; it is also named the Biventer cervicis since it is traversed by an imperfect tendinous inscription. [WP,unvetted]." [Wikipedia:Semispinalis_capitis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22830
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Gray384.png/200px-Gray384.png
xref: MA:0002372
xref: ncithesaurus:Semispinalis_Capitis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001410
name: common palmar digital artery
alt_id: UBERON:FMA_22852-MA_0001957
def: "Three common palmar digital arteries arise from the convexity of the superficial palmar arch and proceed distally on the second, third, and fourth lumbricales muscles." [Wikipedia:Common_palmar_digital_artery]
comment: the MA term, even though plural, represents the singular, as it is an isa child of artery
subset: uberon_slim
synonym: "common palmar digital arteries" EXACT []
xref: FMA:22852
xref: MA:0001957
xref: ncithesaurus:Common_Palmar_Digital_Artery
is_a: UBERON:0004553 ! forelimb digital artery
[Term]
id: UBERON:0001411
name: basilic vein
alt_id: UBERON:FMA_22908-MA_0002086
def: "In human anatomy, the basilic vein is a large superficial vein of the upper limb that helps drain parts of hand and forearm. It originates on the medial (ulnar) side of the dorsal venous network of the hand, and it travels up the base of the forearm and arm. Most of its course is superficial; it generally travels in the subcutaneous fat and other fasciae that lie superficial to the muscles of the upper extremity. Because of this, it is usually visible through the skin. Near the region anterior to the cubital fossa, in the bend of the elbow joint, the basilic vein usually connects with the other large superficial vein of the upper extremity, the cephalic vein, via the median cubital vein. The layout of superficial veins in the forearm is highly variable from person to person, and there are generally a variety of other unnamed superficial veins that the basilic vein communicates with. About halfway up the arm proper (the part between the shoulder and elbow), the basilic vein goes deep, travelling under the muscles. There, around the lower border of the teres major muscle, the anterior and posterior circumflex humeral veins feed into it, just before it joins the brachial veins to form the axillary vein. Along with other superficial veins in the forearm, the basilic vein is a possible site for venipuncture. [WP,unvetted]." [Wikipedia:Basilic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "basilic vein of forearm" EXACT []
xref: FMA:22908
xref: galen:BasilicVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray576.png/200px-Gray576.png
xref: MA:0002086
xref: ncithesaurus:Basilic_Vein
xref: OpenCyc:Mx4rvwrxEpwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0001412
name: common palmar digital vein
alt_id: UBERON:FMA_22923-MA_0002121
comment: Some sources distinguish between the "proper palmar digital veins", which are more distal, and the "common palmar digital veins", which are more proximal.
synonym: "proximal palmar digital vein" EXACT [Wikipedia:Palmar_digital_veins]
xref: FMA:22923
xref: MA:0002121
is_a: UBERON:0004563 ! forelimb digital vein
[Term]
id: UBERON:0001413
name: brachial vein
alt_id: UBERON:FMA_22934-MA_0002087
def: "In human anatomy, the brachial veins are venae comitantes of the brachial artery in the arm proper. Because they are deep to muscle, they are considered deep veins. Their course is that of the brachial artery (in reverse): they begin where radial veins and ulnar veins join (corresponding to the bifurcation of the brachial artery). They end at the inferior border of the teres major muscle. At this point, the brachial veins join the basilic vein to form the axillary vein. The brachial veins also have small tributaries that drain the muscles of the upper arm, such as biceps brachii muscle and triceps brachii muscle. [WP,unvetted]." [Wikipedia:Brachial_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22934
xref: galen:BrachialVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray576.png/200px-Gray576.png
xref: MA:0002087
xref: ncithesaurus:Brachial_Vein
xref: OpenCyc:Mx4rwS3In5wpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0001414
name: median cubital vein
alt_id: UBERON:FMA_22963-MA_0002176
def: "In human anatomy, the median cubital vein (or median basilic vein) a superficial vein of the upper limb. It connects the basilic and cephalic vein and is often used for venipuncture (taking blood). It lies in the cubital fossa superficial to the bicipital aponeurosis. There exists a fair amount of variation of the median cubital vein. More commonly the vein forms an H-pattern with the cephalic and basilic veins making up the sides. Other forms include an M-pattern, where the vein branches to the cephalic and basilic veins. [WP,unvetted]." [Wikipedia:Median_cubital_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:22963
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Gray574.png/200px-Gray574.png
xref: MA:0002176
xref: OpenCyc:Mx4rvzQSYZwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001415
name: skin of pelvis
alt_id: UBERON:FMA_22984-MA_0000546
def: "A zone of skin that is part of a pelvis [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "pelvic skin" EXACT []
synonym: "pelvis skin" EXACT []
synonym: "pelvis zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of pelvis" EXACT [OBOL:automatic]
xref: FMA:22984
xref: MA:0000546
is_a: UBERON:0001085 ! skin of trunk
relationship: part_of UBERON:0002355
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002355 ! pelvis
relationship: part_of UBERON:0001085 ! skin of trunk
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0001416
name: skin of abdomen
alt_id: UBERON:FMA_22988-MA_0000523
def: "A zone of skin that is part of an abdomen [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "abdomen skin" EXACT []
synonym: "abdomen zone of skin" EXACT [OBOL:automatic]
synonym: "abdominal skin" EXACT []
synonym: "zone of skin of abdomen" EXACT [OBOL:automatic]
xref: EFO:0000214
xref: FMA:22988
xref: FMA:23000
xref: MA:0000523
xref: ncithesaurus:Abdominal_Skin
is_a: UBERON:0001085 ! skin of trunk
relationship: part_of UBERON:0000916
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0001417
name: skin of neck
alt_id: UBERON:FMA_23021-MA_0000590
def: "A zone of skin that is part of a neck [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "neck (volume) zone of skin" EXACT [OBOL:automatic]
synonym: "neck skin" EXACT []
synonym: "neck zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of neck" EXACT [OBOL:automatic]
synonym: "zone of skin of neck (volume)" EXACT [OBOL:automatic]
xref: FMA:23021
xref: FMA:23022
xref: MA:0000590
xref: ncithesaurus:Neck_Skin
is_a: UBERON:0000014 ! zone of skin
relationship: part_of UBERON:0000974
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0001418
name: skin of thorax
alt_id: UBERON:FMA_23028-MA_0000564
def: "A zone of skin that is part of a thorax [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "thoracic skin" EXACT []
synonym: "thorax skin" EXACT []
synonym: "thorax zone of skin" EXACT [OBOL:automatic]
synonym: "upper body skin" RELATED []
synonym: "zone of skin of thorax" EXACT [OBOL:automatic]
xref: FMA:23028
xref: FMA:23029
xref: MA:0000564
is_a: UBERON:0001085 ! skin of trunk
relationship: part_of UBERON:0000915
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000915 ! thorax
relationship: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0001419
name: skin of limb
alt_id: UBERON:FMA_23100-MA_0000694
def: "A zone of skin that is part of a limb [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "limb skin" EXACT []
synonym: "limb zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of limb" EXACT [OBOL:automatic]
xref: FMA:23100
xref: MA:0000694
is_a: UBERON:0000014 ! zone of skin
relationship: part_of UBERON:0002101
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0001420
name: subscapular vein
alt_id: UBERON:FMA_23113-MA_0002224
comment: This class was created automatically from a combination of ontologies
xref: FMA:23113
xref: MA:0002224
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001421
name: pectoral girdle
alt_id: UBERON:FMA_23217-MA_0000292-MIAA_0000181-XAO_0003063-ZFA_0000407
def: "set of bones which connects the upper limb to the axial skeleton on each side. It consists of the clavicle and scapula in humans and, in those species with three bones in the pectoral girdle, the coracoid. Some mammalian species (e.g. the dog and the horse) have only the scapula. In humans, the only joints between the shoulder girdle and axial skeleton are the sternoclavicular joints on each side. No joint exists between each scapula and the rib cage; instead the muscular connection between the two permits relatively great mobility of the shoulder girdle in relation to the pelvic girdle., n those species having only the scapula, no joint exists between the forelimb and the thorax, the only attachment being muscular[WP]." [Wikipedia:Pectoral_girdle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "girdle - pectoral" EXACT []
synonym: "pectoral girdle bones" EXACT []
synonym: "shoulder bones" RELATED []
synonym: "shoulder girdle" RELATED []
synonym: "upper limb girdle" EXACT []
xref: AAO:0000422
xref: EFO:0000946
xref: FMA:23217
xref: HOG:0001156
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Pectoral_girdle_front_diagram.svg/200px-Pectoral_girdle_front_diagram.svg.png
xref: MA:0000292
xref: MAT:0000181
xref: MIAA:0000181
xref: ncithesaurus:Shoulder_Girdle
xref: TAO:0000407
xref: XAO:0003063
xref: ZFA:0000407
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0002529 ! limb segment
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0002091 ! appendicular skeleton
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0001422
name: facial lymphatic vessel
alt_id: UBERON:FMA_233946-ZFA_0005108
def: "A lymphatic vessel that is part of a face [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "buccal lymphatic vessel" EXACT []
synonym: "face lymph vessel" EXACT [OBOL:automatic]
synonym: "face lymphatic vessel" EXACT [OBOL:automatic]
synonym: "FL" RELATED []
synonym: "lymph vessel of face" EXACT [OBOL:automatic]
synonym: "lymphatic vessel of face" EXACT [OBOL:automatic]
xref: FMA:233946
xref: TAO:0005108
xref: ZFA:0005108
is_a: UBERON:0001473 ! lymphatic vessel
relationship: part_of UBERON:0001456
intersection_of: UBERON:0001473 ! lymphatic vessel
intersection_of: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0001423
name: radius
alt_id: UBERON:FMA_23463-MA_0001357
def: "." [Wikipedia:Radius_(bone)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0000788
xref: FMA:23463
xref: GAID:185
xref: galen:Radius
xref: MA:0001357
xref: ncithesaurus:Radius
xref: OpenCyc:Mx4rwUsDcZwpEbGdrcN5Y29ycA
is_a: UBERON:0001440 ! skeleton of upper limb
relationship: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0001424
name: ulna
alt_id: UBERON:FMA_23466-MA_0001358
def: "The ulna is a long bone, prismatic in form. In anatomical position the ulna is placed at the medial side of the forearm closest to the body, parallel with the radius on both arms. [WP,unvetted]." [Wikipedia:Ulna]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0000789
xref: FMA:23466
xref: GAID:188
xref: galen:Ulna
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/67/Illu_upper_extremity.jpg/200px-Illu_upper_extremity.jpg
xref: MA:0001358
xref: ncithesaurus:Ulna
xref: OpenCyc:Mx4rwPtIM5wpEbGdrcN5Y29ycA
is_a: UBERON:0002495 ! long bone
is_a: UBERON:0003466 ! implied link automatically realized ! lower arm bone
is_a: UBERON:0003607 ! implied link automatically realized ! forelimb long bone
relationship: part_of UBERON:0001440 ! skeleton of upper limb
relationship: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0001425
name: pectoral lymphatic vessel
alt_id: UBERON:FMA_234865-ZFA_0005107
comment: This class was created automatically from a combination of ontologies
synonym: "PL" RELATED []
xref: FMA:234865
xref: TAO:0005107
xref: ZFA:0005107
is_a: UBERON:0001473 ! lymphatic vessel
[Term]
id: UBERON:0001426
name: jugular lymphatic vessel
alt_id: UBERON:FMA_234908-ZFA_0005109
comment: This class was created automatically from a combination of ontologies
synonym: "JL" RELATED []
xref: FMA:234908
xref: TAO:0005109
xref: ZFA:0005109
is_a: UBERON:0001473 ! lymphatic vessel
[Term]
id: UBERON:0001427
name: scaphoid
alt_id: UBERON:FMA_23709-MA_0002555
def: "The scaphoid Bone is situated at the radial (radius bone) side of the carpus, or laterally between the hand and the forearm in standard medical posture (thumbs pointing outwards). The scaphoid bone is the largest bone of the proximal row of wrist bones, its long axis being from above downward, lateralward, and forward. It is approximately the size and shape of a medium sized cashew. The bone takes a semi-similar form of a boat. In reptiles, birds, and amphibians, this bone is instead commonly referred to as the radiale, because of its articulation with the radius. [WP,unvetted]." [Wikipedia:Scaphoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "navicular bone of hand" EXACT []
synonym: "navicular of hand" RELATED []
synonym: "radial carpal bone" RELATED []
synonym: "scaphoid bone" EXACT []
xref: FMA:23709
xref: GAID:180
xref: galen:Scaphoid
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png
xref: MA:0002555
xref: ncithesaurus:Scaphoid_Bone
xref: OpenCyc:Mx4rwAwWe5wpEbGdrcN5Y29ycA
is_a: UBERON:0001480 ! proximal carpal bone
is_a: UBERON:0003460 ! implied link automatically realized ! arm bone
relationship: part_of UBERON:0001462 ! wrist
relationship: part_of UBERON:0001480 ! proximal carpal bone
[Term]
id: UBERON:0001428
name: lunate
alt_id: UBERON:FMA_23712-MA_0002556
def: "." [Wikipedia:Lunate]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intermediate carpal bone" RELATED []
synonym: "lunate bone" EXACT []
synonym: "semilunar" RELATED []
synonym: "semilunar bone" EXACT []
xref: FMA:23712
xref: GAID:181
xref: galen:Lunate
xref: MA:0002556
xref: ncithesaurus:Lunate_Bone
is_a: UBERON:0001480 ! proximal carpal bone
is_a: UBERON:0003460 ! implied link automatically realized ! arm bone
relationship: part_of UBERON:0001462 ! wrist
relationship: part_of UBERON:0001480 ! proximal carpal bone
[Term]
id: UBERON:0001429
name: pisiform
alt_id: UBERON:FMA_23718-MA_0001339
def: "The pisiform bone (also called pisiform or lentiform bone) is a small knobbly, pea-shaped wrist bone. The pisiform bone is found in the proximal row of the carpus. It is located where the ulna (inner bone of the forearm when in anatomical position) joins the carpus (wrist). It articulates only with the triquetral. It is a sesamoid bone. The pisiform bone may be known by its small size, and by its presenting a single articular facet. It is situated on a plane anterior to the other carpal bones and is spheroidal in form. The etymology derives from the Latin pīsum which means 'pea.' [WP,unvetted]." [Wikipedia:Pisiform, Wikipedia:Pisiform_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "accessory carpal bone" RELATED []
synonym: "pisiform bone" EXACT []
xref: FMA:23718
xref: galen:Pisiform
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png
xref: MA:0001339
xref: ncithesaurus:Pisiform_Bone
xref: OpenCyc:Mx4rvtByTZwpEbGdrcN5Y29ycA
is_a: UBERON:0001480 ! proximal carpal bone
is_a: UBERON:0003460 ! implied link automatically realized ! arm bone
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001430
name: trapezium
alt_id: UBERON:FMA_23721-MA_0001340
def: "." [Wikipedia:Trapezium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "greater multangular bone" EXACT []
synonym: "greater multiangular" RELATED []
synonym: "hand distal carpal bone 1" RELATED []
synonym: "trapezial bone" EXACT []
synonym: "trapezium bone" EXACT []
xref: FMA:23721
xref: galen:Trapezium
xref: MA:0001340
xref: ncithesaurus:Trapezial_Bone
xref: OpenCyc:Mx4rv3CbrJwpEbGdrcN5Y29ycA
is_a: UBERON:0001481 ! distal carpal bone
is_a: UBERON:0003460 ! implied link automatically realized ! arm bone
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001431
name: trapezoid
alt_id: UBERON:FMA_23724-MA_0001341
def: "." [Wikipedia:Trapezoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hand distal carpal bone 2" RELATED []
synonym: "lesser multangular bone" EXACT []
synonym: "lesser multiangular" RELATED []
synonym: "trapezoid bone" EXACT []
xref: FMA:23724
xref: galen:Trapezoid
xref: MA:0001341
xref: ncithesaurus:Trapezoid_Bone
xref: OpenCyc:Mx4rvVvsjpwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rvxNWBJwpEbGdrcN5Y29ycA
is_a: UBERON:0001481 ! distal carpal bone
is_a: UBERON:0003460 ! implied link automatically realized ! arm bone
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001432
name: capitate
alt_id: UBERON:FMA_23727-MA_0001342
def: "The capitate bone is a bone in the human hand. The capitate bone is the largest of the carpal bones, and occupies the center of the wrist. It presents, above, a rounded portion or head, which is received into the concavity formed by the scaphoid and lunate bones; a constricted portion or neck; and below this, the body. The bone is also found in many other mammals, and is homologous with the 'third distal carpal' of reptiles and amphibians. The etymology derives from the Latin capitātus, 'having a head,' from capit-, meaning 'head.' [WP,unvetted]." [Wikipedia:Capitate, Wikipedia:Capitate_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "capitate bone" EXACT []
synonym: "hand distal carpal bone 3" RELATED []
synonym: "os magnum (carpus)" EXACT []
xref: FMA:23727
xref: galen:Capitate
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png
xref: MA:0001342
xref: ncithesaurus:Capitate_Bone
xref: OpenCyc:Mx4rvZFPrZwpEbGdrcN5Y29ycA
is_a: UBERON:0001481 ! distal carpal bone
is_a: UBERON:0003460 ! implied link automatically realized ! arm bone
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001433
name: hamate
alt_id: UBERON:FMA_23730-MA_0001343
def: "The hamate bone (unciform bone) is a bone in the human hand that may be readily distinguished by its wedge-shaped form, and the hook-like process which projects from its volar surface. It is situated at the medial and lower angle of the carpus, with its base downward, resting on the fourth and fifth metacarpal bones, and its apex directed upward and lateralward. The bone is also found in many other mammals, and is homologous with the 'fourth distal carpal' of reptiles and amphibians. The etymology derives from the Latin hamatus 'hooked,' from hamus which means 'hook.' [WP,unvetted]." [Wikipedia:Hamate, Wikipedia:Hamate_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hamate bone" EXACT []
synonym: "hand distal carpal bone 4" RELATED []
synonym: "unciform" RELATED []
synonym: "unciform bone" EXACT []
synonym: "uncinate" RELATED []
xref: FMA:23730
xref: galen:Hamate
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png
xref: MA:0001343
xref: ncithesaurus:Hamate_Bone
xref: OpenCyc:Mx4rwFTmuJwpEbGdrcN5Y29ycA
is_a: UBERON:0001481 ! distal carpal bone
is_a: UBERON:0003460 ! implied link automatically realized ! arm bone
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001434
name: skeletal system
alt_id: UBERON:FMA_23875-FMA_23881-MA_0000018-MIAA_0000032-XAO_0003060-ZFA_0000434
def: "Organ system subdivision which consists of the skeleton and the articular system." [AAO:0000566, Wikipedia:Skeleton]
comment: The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) GO:0001501
subset: uberon_slim
synonym: "set of all bones and joints" EXACT []
synonym: "skeleton system" EXACT []
xref: AAO:0000566
xref: BTO:0001486
xref: EHDAA2:0003168
xref: FMA:23881
xref: HOG:0001254
xref: MA:0000018
xref: ncithesaurus:Skeletal_System
xref: OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA
xref: TAO:0000434
xref: XAO:0003060
xref: ZFA:0000434
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001474 ! bone
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0001435
name: carpal bone
alt_id: UBERON:FMA_23889-MA_0000296
def: "In tetrapods, the carpals is the sole cluster of the bones in the wrist between the radius and ulna and the metacarpus. The bones of the carpus do not belong to individual fingers (or toes in quadrupeds), whereas those of the metacarpus do. The corresponding part of the foot is the tarsus. The carpal bones allow the wrist to move and rotate vertically, horizontally and laterally. In human anatomy, the main role of the carpus is to facilitate effective positioning of the hand and powerful use of the extensors and flexors of the forearm, but the mobility of individual carpal bones increase the freedom of movements at the wrist. [WP,unvetted]." [Wikipedia:Carpal_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bone of carpus" EXACT []
xref: FMA:23889
xref: GAID:179
xref: galen:CarpalBone
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/58/Carpus.svg/200px-Carpus.svg.png
xref: MA:0000296
xref: ncithesaurus:Carpal_Bone
is_a: UBERON:0003656 ! carpal/tarsal bone
is_a: UBERON:0005897 ! implied link automatically realized ! hand bone
relationship: part_of UBERON:0004452 ! carpus
[Term]
id: UBERON:0001436
name: phalanx of finger
alt_id: UBERON:FMA_23914-MA_0000306
def: "A phalanx that is part of a forelimb[Obol]." [Obol:obol]
comment: This class was created automatically from a combination of ontologies
synonym: "digitus manus phalanx" EXACT [OBOL:automatic]
synonym: "finger phalanx" EXACT [OBOL:automatic]
synonym: "hand digit phalanx" EXACT [OBOL:automatic]
synonym: "hand phalanx" EXACT []
synonym: "hand phalanx" EXACT [MA:0000306]
synonym: "phalanges of fore digit" RELATED PLURAL [AAO:0000947]
synonym: "phalanx of digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of digitus manus" EXACT [OBOL:automatic]
synonym: "phalanx of fore digit" EXACT []
synonym: "phalanx of hand" EXACT []
synonym: "phalanx of hand digit" EXACT [OBOL:automatic]
xref: AAO:0000947
xref: FMA:23914
xref: MA:0000306
xref: ncithesaurus:Hand_Phalanx
is_a: UBERON:0003221 ! implied link automatically realized ! phalanx
is_a: UBERON:0003607 ! implied link automatically realized ! forelimb long bone
is_a: UBERON:0004249 ! implied link automatically realized ! hand digit bone
relationship: part_of UBERON:0002389
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0001437
name: epiphysis
alt_id: UBERON:FMA_24012-ZFA_0000019
def: "Subdivision of long bone which forms its expanded proximal or distal articular end; together with other the subdivisions of long bone, it constitutes the long bone. Examples: proximal epiphysis of humerus, distal epiphysis of femur." [Wikipedia:Epiphysis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "end of long bone" EXACT []
synonym: "epiphyses" EXACT PLURAL []
synonym: "long bone epiphysis" EXACT []
xref: AAO:0000742
xref: BTO:0000413
xref: FMA:24012
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Illu_long_bone.jpg/200px-Illu_long_bone.jpg
xref: MA:0001362
is_a: UBERON:0005055 ! zone of long bone
[Term]
id: UBERON:0001438
name: metaphysis
alt_id: UBERON:FMA_24014-MA_0001363
def: "Subdivision of diaphysis which forms the proximal or distal end of diaphysis next to the epiphysis; together with diaphysis proper, it constitutes the diaphysis. Examples: proximal metaphysis of humerus, distal metaphysis of femur." [Wikipedia:Metaphysis]
comment: adjacent to or containing epiphyseal plate? Note in FMA the metaphysis is part of the diaphysis, but not in MA. In the diagram in WP, it appears to be adjacent, not part_of.
subset: uberon_slim
synonym: "diaphyseal end of long bone" EXACT []
synonym: "long bone metaphysis" EXACT []
synonym: "metaphyses" EXACT PLURAL []
xref: FMA:24014
xref: MA:0001363
xref: ncithesaurus:Metaphysis
is_a: UBERON:0005055 ! zone of long bone
relationship: part_of UBERON:0004769 ! diaphysis
[Term]
id: UBERON:0001439
name: compact bone
alt_id: UBERON:FMA_24018-MA_0001461
def: "one of the two types of osseous tissue that form bones. Compact/Cortical bone facilitates bone's main functions: to support the body, protect organs, provide levers for movement, and store and release chemical elements, mainly calcium. As its name implies, cortical bone forms the cortex, or outer shell, of most bones. Again, as its name implies, compact bone is much denser than cancellous bone, which is the other type of osseous tissue. Furthermore, it is harder, stronger and stiffer than cancellous bone. Cortical bone contributes about 80% of the weight of a human skeleton. The primary anatomical and functional unit of cortical bone is the osteon.." [Wikipedia:Compact_bone]
comment: MP distinguishes compact/cortical bone. in other AOs they are syns
subset: uberon_slim
synonym: "bony cortex" EXACT [HP:0002753]
synonym: "compact bone tissue" EXACT []
synonym: "cortical bone" EXACT []
synonym: "cortical bone tissue" EXACT []
synonym: "cortical region of bone" EXACT []
synonym: "substantia compacta (pars ossea)" EXACT []
xref: FMA:24018
xref: galen:CorticalBone
xref: MA:0001461
xref: ncithesaurus:Cortical_Bone
is_a: UBERON:0002481 ! bone tissue
relationship: part_of UBERON:0002482 ! lamellar bone
[Term]
id: UBERON:0001440
name: skeleton of upper limb
alt_id: UBERON:FMA_24139-MA_0000612
def: "A subdivision of skeletal system that is part of a forelimb [Obol]." [OBOL:automatic]
comment: TODO - split skeleton from single bone
synonym: "anteriormost limb subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "bones of upper limb" EXACT []
synonym: "fore limb skeleton" EXACT []
synonym: "fore limb subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "forelimb bone" EXACT []
synonym: "forelimb skeleton" EXACT [HOG:0001256]
synonym: "forelimb subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "set of bones of upper limb" EXACT []
synonym: "subdivision of skeleton of anteriormost limb" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of fore limb" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of forelimb" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of superior member" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of upper extremity" EXACT [OBOL:automatic]
synonym: "superior member subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "upper extremity subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "upper limb skeleton" EXACT []
xref: AAO:0000202
xref: EHDAA2:0002222
xref: FMA:24139
xref: HOG:0001256
xref: MA:0000612
xref: XAO:0003061
is_a: UBERON:0000075 ! subdivision of skeletal system
is_a: UBERON:0004381 ! implied link automatically realized ! skeleton of limb
relationship: part_of UBERON:0002102
intersection_of: UBERON:0000075 ! subdivision of skeletal system
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0001441
name: skeleton of lower limb
alt_id: UBERON:FMA_24140-MA_0000670
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bones of lower limb" EXACT []
synonym: "hind limb skeleton" EXACT [XAO:0003062]
synonym: "hind limb subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "hindlimb skeleton" EXACT [HOG:0001255]
synonym: "hindlimb subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "inferior member subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "lower extremity subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "lower limb skeleton" EXACT []
synonym: "set of bones of lower limb" EXACT []
synonym: "subdivision of skeleton of hind limb" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of hindlimb" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of inferior member" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of lower extremity" EXACT [OBOL:automatic]
xref: AAO:0000217
xref: EHDAA2:0002226
xref: FMA:24140
xref: HOG:0001255
xref: OpenCyc:Mx4rvZcKkZwpEbGdrcN5Y29ycA
xref: XAO:0003062
is_a: UBERON:0004381 ! implied link automatically realized ! skeleton of limb
relationship: part_of UBERON:0002103
intersection_of: UBERON:0000075 ! subdivision of skeletal system
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: has_part UBERON:0002428 ! limb bone
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001442
name: skeleton of hand
alt_id: UBERON:FMA_24159-MA_0000619
def: "A subdivision of skeletal system that is part of a hand [Obol]." [OBOL:automatic]
comment: TODO: check skeleton vs part of skeleton
synonym: "arm autopod subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "autopod of arm subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "autopod of brachial region subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "bones of hand" EXACT []
synonym: "brachial region autopod subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "hand skeleton" EXACT []
synonym: "hand subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "set of bones of hand" EXACT []
synonym: "subdivision of skeleton of arm autopod" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of autopod of arm" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of brachial region autopod" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of hand" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb subdivision of skeleton" EXACT [OBOL:automatic]
xref: FMA:24159
xref: OpenCyc:Mx4rvdHPJJwpEbGdrcN5Y29ycA
is_a: UBERON:0001440 ! skeleton of upper limb
relationship: part_of UBERON:0002398
intersection_of: UBERON:0000075 ! subdivision of skeletal system
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0001443
name: chest
alt_id: UBERON:FMA_24216-MA_0000031
def: "Subdivision of thorax, which is the anterolateral part of the thorax and is demarcated from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the back of the thorax, it constitutes the thorax. Examples: There is only one chest." [Wikipedia:Chest]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior thoracic region" EXACT []
synonym: "anterolateral part of thorax" EXACT []
synonym: "front of thorax" EXACT []
synonym: "thoracic body wall" RELATED []
xref: EFO:0000965
xref: FMA:24216
xref: FMA:24816
xref: galen:Chest
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Chest.jpg/200px-Chest.jpg
xref: MA:0000031
xref: ncithesaurus:Chest
xref: OpenCyc:Mx4rvVikFZwpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0001444
name: subdivision of head
alt_id: UBERON:FMA_24218-XAO_0000040
comment: This class was created automatically from a combination of ontologies
synonym: "head region" EXACT []
synonym: "head subdivision" EXACT []
synonym: "region of head" EXACT []
xref: FMA:24218
xref: XAO:0000040
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0001445
name: skeleton of foot
alt_id: UBERON:FMA_24222-MA_0000643
def: "A subdivision of skeletal system that is part of a foot [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "autopod of hind limb subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "autopod of inferior member subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "foot skeleton" EXACT []
synonym: "foot subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "hind limb autopod subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "hindlimb autopod subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "inferior member autopod subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "lower extremity autopod subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "set of bones of foot" EXACT []
synonym: "subdivision of skeleton of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of foot" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of hind limb autopod" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of inferior member autopod" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb subdivision of skeleton" EXACT [OBOL:automatic]
xref: FMA:24222
xref: ncithesaurus:Foot_Bone
xref: OpenCyc:Mx4rv5ridZwpEbGdrcN5Y29ycA
is_a: UBERON:0001441 ! implied link automatically realized ! skeleton of lower limb
relationship: part_of UBERON:0002387
intersection_of: UBERON:0000075 ! subdivision of skeletal system
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0001446
name: fibula
alt_id: UBERON:FMA_24479-MA_0001360
def: "The fibula or calf bone is a bone located on the lateral side of the tibia, with which it is connected above and below. It is the smaller of the two bones, and, in proportion to its length, the most slender of all the long bones. Its upper extremity is small, placed toward the back of the head of the tibia, below the level of the knee-joint, and excluded from the formation of this joint. Its lower extremity inclines a little forward, so as to be on a plane anterior to that of the upper end; it projects below the tibia, and forms the lateral part of the ankle-joint. [WP,unvetted]." [Wikipedia:Fibula]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0000891
xref: BTO:0002346
xref: FMA:24479
xref: GAID:202
xref: galen:Fibula
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Illu_lower_extremity.jpg/200px-Illu_lower_extremity.jpg
xref: MA:0001360
xref: ncithesaurus:Fibula
is_a: UBERON:0002495 ! long bone
is_a: UBERON:0003608 ! implied link automatically realized ! hindlimb long bone
relationship: part_of UBERON:0001441 ! skeleton of lower limb
[Term]
id: UBERON:0001447
name: tarsal bone
alt_id: UBERON:FMA_24491-MA_0000297
def: "In humans, cluster of bones in the foot between the tibia and fibula and the metatarsus. The bones of the tarsus do not belong to individual toes, whereas those of the metatarsus do. The joint between the tibia and fibula and the tarsus is referred to as the ankle joint[WP]." [Wikipedia:Ankle_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ankle bone" EXACT []
synonym: "bone of ankle" EXACT []
synonym: "bone of tarsus" EXACT []
xref: BTO:0002343
xref: FMA:24491
xref: GAID:194
xref: galen:TarsalBone
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png
xref: MA:0000297
xref: ncithesaurus:Tarsal_Bone
is_a: UBERON:0005899 ! implied link automatically realized ! foot bone
relationship: part_of UBERON:0004454
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0004454 ! tarsus
[Term]
id: UBERON:0001448
name: metatarsal bone
alt_id: UBERON:FMA_24492-MA_0000303
def: "The metatarsus or metatarsal bones are a group of five long bones in the foot located between the tarsal bones of the hind- and mid-foot and the phalanges of the toes. Lacking individual names, the metatarsal bones are numbered from the medial side (side of big toe): the first, second, third, fourth, and fifth metatarsal. The metatarsals are analogous to the metacarpal bones of the hand. [WP,unvetted]." [Wikipedia:Metatarsal_bone]
subset: uberon_slim
synonym: "hind metapodium" EXACT [AAO:0000221, http://en.wiktionary.org/wiki/metapodial]
synonym: "metatarsal" EXACT []
xref: AAO:0000221
xref: BTO:0002347
xref: FMA:24492
xref: GAID:193
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png
xref: MA:0000303
xref: ncithesaurus:Metatarsal_Bone
is_a: UBERON:0001445 ! skeleton of foot
is_a: UBERON:0003821 ! metacarpal/metatarsal bone
is_a: UBERON:0005899 ! implied link automatically realized ! foot bone
relationship: part_of UBERON:0000983 ! metatarsus
[Term]
id: UBERON:0001449
name: phalanx of toe
alt_id: UBERON:0004272
alt_id: UBERON:FMA_24493-MA_0000305
def: "A phalanx that is part of a hindlimb[Obol]." [OBOL:automatic]
synonym: "digitus pedis phalanx" EXACT [OBOL:automatic]
synonym: "foot digit phalanx" EXACT [OBOL:automatic]
synonym: "foot phalanx" EXACT [MA:0000305]
synonym: "phalanges of hind digit" RELATED PLURAL [AAO:0000930]
synonym: "phalanx of digit of foot" EXACT [OBOL:automatic]
synonym: "phalanx of digitus pedis" EXACT [OBOL:automatic]
synonym: "phalanx of foot digit" EXACT [OBOL:automatic]
synonym: "phalanx of hind digit" EXACT []
synonym: "toe phalanx" EXACT [OBOL:automatic]
xref: AAO:0000930
xref: FMA:24493
xref: MA:0000305
is_a: UBERON:0003221 ! implied link automatically realized ! phalanx
is_a: UBERON:0003608 ! implied link automatically realized ! hindlimb long bone
is_a: UBERON:0004248 ! implied link automatically realized ! foot digit bone
relationship: part_of UBERON:0002387
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0001450
name: calcaneus
alt_id: UBERON:FMA_24496-MA_0001348
def: "In humans, the calcaneus or heel bone is a bone of the tarsus of the foot which constitute the heel. In some other animals, it is the point of the hock. [WP,unvetted]." [Wikipedia:Calcaneus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "calcaneum" EXACT []
synonym: "fibulare" RELATED []
synonym: "os calcis" EXACT []
xref: FMA:24496
xref: galen:Calcaneum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Subtalar_Joint.PNG/200px-Subtalar_Joint.PNG
xref: MA:0001348
xref: ncithesaurus:Calcaneum
is_a: UBERON:0001447 ! tarsal bone
[Term]
id: UBERON:0001451
name: navicular bone of foot
alt_id: UBERON:FMA_24499-MA_0001349
def: "The navicular bone occurs in human and horse anatomy. [WP,unvetted]." [Wikipedia:Navicular]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "central tarsal bone" RELATED []
synonym: "centrale" RELATED []
synonym: "navicular" EXACT []
synonym: "navicular of foot" EXACT []
xref: FMA:24499
xref: galen:Navicular
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray276.png/200px-Gray276.png
xref: MA:0001349
xref: OpenCyc:Mx4rv67esJwpEbGdrcN5Y29ycA
is_a: UBERON:0001447 ! tarsal bone
[Term]
id: UBERON:0001452
name: medial cuneiform bone
alt_id: UBERON:FMA_24518-MA_0001352
def: "The medial cuneiform (also known as first cuneiform) is the largest of the cuneiforms. It is situated at the medial side of the foot, anterior to the navicular and posterior to the base of the first metatarsal. It articulates with four bones: the navicular, second cuneiform, and first and second metatarsals. [WP,unvetted]." [Wikipedia:Medial_cuneiform_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "first cuneiform bone" EXACT []
synonym: "foot distal carpal bone 1" RELATED []
synonym: "medial cuneiform" EXACT []
xref: BTO:0002360
xref: FMA:24518
xref: galen:MedialCuneiform
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray290.png/200px-Gray290.png
xref: MA:0001352
xref: OpenCyc:Mx4rvYtfH5wpEbGdrcN5Y29ycA
is_a: UBERON:0001447 ! tarsal bone
[Term]
id: UBERON:0001453
name: intermediate cuneiform bone
alt_id: UBERON:FMA_24519-MA_0001353
def: "The intermediate cuneiform (also known as second cuneiform / middle cuneiform) is shaped like a wedge, the thin end pointing downwards. It is situated between the other two cuneiforms (the medial and lateral cuneiforms), and articulates with the navicular posteriorly, the second metatarsal anteriorly and with the other cuneiforms on either side. [WP,unvetted]." [Wikipedia:Intermediate_cuneiform_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "foot distal carpal bone 2" RELATED []
synonym: "intermediate cuneiform" EXACT []
synonym: "middle cuneiform" EXACT []
synonym: "second cuneiform bone" EXACT []
synonym: "second cuneiform bone of foot" EXACT []
xref: BTO:0002359
xref: FMA:24519
xref: galen:IntermediateCuneiform
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png
xref: MA:0001353
is_a: UBERON:0001447 ! tarsal bone
[Term]
id: UBERON:0001454
name: lateral cuneiform bone
alt_id: UBERON:FMA_24520-MA_0001354
def: "The lateral cuneiform (also known as third cuneiform / external cuneiform) intermediate in size between the other two cuneiform bones, is also wedge-shaped, the base being uppermost. It occupies the center of the front row of the tarsal bones, between the second cuneiform medially, the cuboid laterally, the navicular posteriorly and the third metatarsal in front. [WP,unvetted]." [Wikipedia:Lateral_cuneiform_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "foor distal carpal bone 3" RELATED []
synonym: "lateral cuneiform" EXACT []
synonym: "third cuneiform bone" EXACT []
xref: BTO:0002358
xref: FMA:24520
xref: galen:LateralCuneiform
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png
xref: MA:0001354
xref: OpenCyc:Mx4rvoLPu5wpEbGdrcN5Y29ycA
is_a: UBERON:0001447 ! tarsal bone
[Term]
id: UBERON:0001455
name: cuboid bone
alt_id: UBERON:FMA_24527-MA_0001355
def: "In the human body, the cuboid bone is one of the seven tarsal bones of the foot. [WP,unvetted]." [Wikipedia:Cuboid_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cuboid" EXACT []
synonym: "foot distal carpal bone 4 and 5" RELATED []
xref: BTO:0002357
xref: FMA:24527
xref: galen:Cuboid
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/18/Gray274.png/200px-Gray274.png
xref: MA:0001355
xref: ncithesaurus:Cuboid_Bone
is_a: UBERON:0001447 ! tarsal bone
[Term]
id: UBERON:0001456
name: face
alt_id: UBERON:FMA_24728-MA_0002473
def: "Subdivision of head which consists of the viscerocranium and all layers superficial to it. Examples: There is only one face." [Wikipedia:Face]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003369
xref: FMA:24728
xref: GAID:64
xref: galen:Face
xref: HAO:0000316
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Mona_Lisa_headcrop.jpg/200px-Mona_Lisa_headcrop.jpg
xref: MA:0002473
xref: ncithesaurus:Face
xref: OpenCyc:Mx4rvVi5GZwpEbGdrcN5Y29ycA
is_a: UBERON:0001444 ! subdivision of head
[Term]
id: UBERON:0001457
name: skin of eyelid
alt_id: UBERON:FMA_24760-MA_0001256
def: "A zone of skin that is part of a eyelid [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "blepharon zone of skin" EXACT [OBOL:automatic]
synonym: "eyelid skin" EXACT []
synonym: "eyelid zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of blepharon" EXACT [OBOL:automatic]
synonym: "zone of skin of eyelid" EXACT [OBOL:automatic]
xref: FMA:24760
xref: MA:0001256
xref: ncithesaurus:Eyelid_Skin
is_a: UBERON:0000014 ! zone of skin
is_a: UBERON:0001084 ! implied link automatically realized ! skin of head
relationship: part_of UBERON:0001711
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001711 ! eyelid
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0001458
name: skin of lip
alt_id: UBERON:FMA_24764-MA_0001579
def: "A zone of skin that is part of a lip [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "lip skin" EXACT []
synonym: "lip zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of lip" EXACT [OBOL:automatic]
xref: FMA:24764
xref: MA:0001579
is_a: UBERON:0000014 ! zone of skin
is_a: UBERON:0001084 ! implied link automatically realized ! skin of head
relationship: part_of UBERON:0001833
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001833 ! lip
[Term]
id: UBERON:0001459
name: skin of external ear
alt_id: UBERON:FMA_24775-MA_0001233
def: "A zone of skin that is part of a external ear [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "auricular region of head zone of skin" EXACT [OBOL:automatic]
synonym: "auricular region zone of skin" EXACT [OBOL:automatic]
synonym: "ear skin" EXACT []
synonym: "external ear skin" EXACT []
synonym: "external ear zone of skin" EXACT [OBOL:automatic]
synonym: "outer ear zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of auricular region" EXACT [OBOL:automatic]
synonym: "zone of skin of auricular region of head" EXACT [OBOL:automatic]
synonym: "zone of skin of external ear" EXACT [OBOL:automatic]
synonym: "zone of skin of outer ear" EXACT [OBOL:automatic]
xref: FMA:24775
xref: MA:0001233
xref: ncithesaurus:Ear_Skin
is_a: UBERON:0000014 ! zone of skin
is_a: UBERON:0001084 ! implied link automatically realized ! skin of head
relationship: part_of UBERON:0001691
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001691 ! external ear
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0001460
name: arm
alt_id: UBERON:FMA_24890-MA_0000033
def: "In humans, the arms are the two upper limbs of the body from the shoulder to the hand[GO]." [Wikipedia:Arm]
comment: This class refers to the combination of the stylopod and zeugopod of a forelimb. Sometimes (cf FMA), 'arm' denotes the stylopod only; sometimes (cf MA), 'arm' denotes the part of the forelimb covering both (i.e. shoulder to hand). Also note distinction between arm and forelimb: hand is part of forelimb, but not part of arm.
subset: uberon_slim
xref: BTO:0001435
xref: EFO:0001410
xref: EHDAA:4164
xref: EHDAA:6210
xref: EHDAA:8275
xref: EHDAA2:0000140
xref: GAID:52
xref: HOG:0000339
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Upperarm.jpg/200px-Upperarm.jpg
xref: MA:0000033
xref: OpenCyc:Mx4rvVjp5ZwpEbGdrcN5Y29ycA
is_a: UBERON:0006058 ! multi-limb segment region
relationship: adjacent_to UBERON:0002398 ! hand
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0001461
name: elbow
alt_id: UBERON:FMA_24901-MA_0000036
def: "The elbow is the region surrounding the elbow-joint—the ginglymus or hinge joint in the middle of the arm. Three bones form the elbow joint: the humerus of the upper arm, and the paired radius and ulna of the forearm. The bony prominence at the very tip of the elbow is the olecranon process of the ulna, and the inner aspect of the elbow is called the antecubital fossa. [WP,unvetted]." [Wikipedia:Elbow]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cubital region" EXACT []
xref: EHDAA:4166
xref: EHDAA:6212
xref: EHDAA2:0000429
xref: FMA:24901
xref: GAID:54
xref: galen:Elbow
xref: HOG:0000340
xref: MA:0000036
xref: OpenCyc:Mx4rvVjjNZwpEbGdrcN5Y29ycA
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0001462
name: wrist
alt_id: UBERON:FMA_24922-MA_0000039
def: "In human anatomy, the wrist is variously defined as (1) the carpus or carpal bones, the complex of eight bones forming the proximal skeletal segment of the hand; (2) the wrist joint or radiocarpal joint, the joint between the radius and the carpus; and (3) the anatomical region surrounding the carpus including the distal parts of the bones of the forearm and the proximal parts of the metacarpus or five metacarpal bones and the series of joints between these bones, thus referred to as wrist joints. This region also include the carpal tunnel, the anatomical snuff box, the flexor retinaculum, and the extensor retinaculum. As a consequence of these various definitions, fractures to the carpal bones are referred to as carpal fractures, while fractures such as distal radius fracture are considered fractures to the wrist. [WP,unvetted]." [Wikipedia:Wrist]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "carpal region" EXACT []
xref: EHDAA:5196
xref: EHDAA2:0000218
xref: FMA:24922
xref: GAID:59
xref: galen:Wrist
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Human_wrist.png/200px-Human_wrist.png
xref: MA:0000039
xref: OpenCyc:Mx4rvVjncpwpEbGdrcN5Y29ycA
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0001463
name: hand digit 1
alt_id: UBERON:FMA_24938-MA_0000454
def: "1st (lateral-most) digit of the hand in mouse and human[Wikipedia]." [Wikipedia:Thumb]
comment: This class represents all instances of the first digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
subset: uberon_slim
synonym: "digitus primus" EXACT []
synonym: "first digit of hand" EXACT []
synonym: "pollex" EXACT []
synonym: "pollex; digitus primus [I]" EXACT []
synonym: "thumb" EXACT []
xref: FMA:24938
xref: GAID:58
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Thumb-up.jpg/200px-Thumb-up.jpg
xref: MA:0000454
xref: ncithesaurus:Hand_Digit_1
xref: OpenCyc:Mx4rvVjVbpwpEbGdrcN5Y29ycA
is_a: UBERON:0002389 ! finger
is_a: UBERON:0006048 ! digit 1
[Term]
id: UBERON:0001464
name: hip
alt_id: UBERON:FMA_24964-MA_0000045
def: "In human anatomy, hip (or 'coxa' in medical terminology) refer to either an anatomical region or a joint. The hip region is located lateral to the gluteal region (i.e. the buttock), inferior to the iliac crest, and overlying the greater trochanter of the thigh bone. In adults, three of the bones of the pelvis have fused into the hip bone which forms part of the hip region. The hip joint, scientifically referred to as the acetabulofemoral joint (art. coxae), is the joint between the femur and acetabulum of the pelvis and its primary function is to support the weight of the body in both static (e.g. standing) and dynamic (e.g. walking or running) postures. [WP,unvetted]." [Wikipedia:Hip]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hip region" EXACT []
synonym: "regio coxae" EXACT []
xref: BTO:0001457
xref: EFO:0001929
xref: EHDAA:5153
xref: EHDAA:6178
xref: EHDAA2:0000783
xref: FMA:24964
xref: GAID:47
xref: galen:Hip
xref: HOG:0000346
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9f/Hip.jpg/200px-Hip.jpg
xref: MA:0000045
xref: ncithesaurus:Hip
xref: OpenCyc:Mx4rvVjhy5wpEbGdrcN5Y29ycA
is_a: UBERON:0002529 ! limb segment
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001271 ! pelvic girdle
[Term]
id: UBERON:0001465
name: knee
alt_id: UBERON:FMA_24974-MA_0000046
def: "The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation. Since in humans the knee supports nearly the whole weight of the body, it is the joint most vulnerable both to acute injury and the development of osteoarthritis. [WP,unvetted]." [Wikipedia:Knee]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003595
xref: EFO:0001957
xref: EHDAA:5159
xref: EHDAA:6184
xref: EHDAA2:0000895
xref: FMA:24974
xref: GAID:48
xref: galen:Knee
xref: HOG:0000347
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Male_Knee_by_David_Shankbone.jpg/200px-Male_Knee_by_David_Shankbone.jpg
xref: MA:0000046
xref: OpenCyc:Mx4rvVjPKZwpEbGdrcN5Y29ycA
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001466
name: toe
alt_id: UBERON:FMA_25046-MA_0000048
def: "A digit that is part_of a hindlimb[Obol]." [Wikipedia:Toe]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "autopod of hind limb digit" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb digit" EXACT [OBOL:automatic]
synonym: "autopod of inferior member digit" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity digit" EXACT [OBOL:automatic]
synonym: "digit of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "digit of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "digit of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "digit of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "digit of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "digit of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "digit of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "digit of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "digit of foot" EXACT []
synonym: "digit of hind limb autopod" EXACT [OBOL:automatic]
synonym: "digit of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "digit of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "digit of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "digit of inferior member autopod" EXACT [OBOL:automatic]
synonym: "digit of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "digit of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "digit of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "digitus pedis" EXACT []
synonym: "distal free limb segment of hind limb digit" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb digit" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member digit" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity digit" EXACT [OBOL:automatic]
synonym: "foot digit" EXACT []
synonym: "hind limb autopod digit" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment digit" EXACT [OBOL:automatic]
synonym: "hind_digit" EXACT [AAO:0000888]
synonym: "hindlimb autopod digit" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment digit" EXACT [OBOL:automatic]
synonym: "inferior member autopod digit" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment digit" EXACT [OBOL:automatic]
synonym: "lower extremity autopod digit" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment digit" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit" EXACT [OBOL:automatic]
xref: AAO:0000888
xref: BTO:0002348
xref: FMA:25046
xref: GAID:44
xref: galen:Toe
xref: MA:0000048
xref: ncithesaurus:Toe
xref: OpenCyc:Mx4rvVjCHZwpEbGdrcN5Y29ycA
is_a: UBERON:0000027 ! hind digit
relationship: part_of UBERON:0002387
intersection_of: UBERON:0002544 ! digit
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0001467
name: shoulder
alt_id: UBERON:FMA_25202-MA_0000038
def: "In human anatomy, the shoulder joint comprises the part of the body where the humerus attaches to the scapula. The shoulder refers to the group of structures in the region of the joint. It is made up of three bones: the clavicle (collarbone), the scapula (shoulder blade), and the humerus (upper arm bone) as well as associated muscles, ligaments and tendons. The articulations between the bones of the shoulder make up the shoulder joints. There are two kinds of cartilage in the joint. The first type is the white cartilage on the ends of the bones (called articular cartilage) which allows the bones to glide and move on each other. When this type of cartilage starts to wear out (a process called arthritis), the joint becomes painful and stiff. The labrum is a second kind of cartilage in the shoulder which is distinctly different from the articular cartilage. This cartilage is more fibrous or rigid than the cartilage on the ends of the ball and socket. Also, this cartilage is also found only around the socket where it is attached. The shoulder must be flexible for the wide range of motion required in the arms and hands and also strong enough to allow for actions such as lifting, pushing and pulling. The compromise between these two functions results in a large number of shoulder problems not faced by other joints such as the hip. [WP,unvetted]." [Wikipedia:Shoulder]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:4180
xref: EHDAA:6228
xref: EHDAA2:0001834
xref: FMA:25202
xref: GAID:60
xref: galen:Shoulder
xref: HOG:0000342
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/90/Shoulderjoint.PNG/200px-Shoulderjoint.PNG
xref: MA:0000038
xref: ncithesaurus:Shoulder
xref: OpenCyc:Mx4rvViCM5wpEbGdrcN5Y29ycA
is_a: UBERON:0002529 ! limb segment
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001421 ! pectoral girdle
[Term]
id: UBERON:0001468
name: intervertebral symphysis
alt_id: UBERON:FMA_25511-MA_0001514
comment: This class was created automatically from a combination of ontologies
synonym: "joint of vertebral body" EXACT []
xref: FMA:25511
xref: MA:0001514
is_a: UBERON:0002216 ! symphysis
is_a: UBERON:0005174 ! implied link automatically realized ! back organ
relationship: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0001469
name: sternoclavicular joint
alt_id: UBERON:FMA_25883-MA_0001507
def: "The sternoclavicular articulation is a double arthrodial joint composed of two portions separated by an articular disc. The parts entering into its formation are the sternal end of the clavicle, the upper and lateral part of the manubrium sterni, and the cartilage of the first rib, visible from the outside as the suprasternal notch. The articular surface of the clavicle is much larger than that of the sternum, and is invested with a layer of cartilage, which is considerably thicker than that on the latter bone. The ligaments of this joint are: Articular capsule Anterior sternoclavicular ligament Posterior sternoclavicular ligament Interclavicular ligament Costoclavicular ligament Articular disk [WP,unvetted]." [Wikipedia:Sternoclavicular_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:25883
xref: GAID:270
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3f/Gray325.png/200px-Gray325.png
xref: MA:0001507
xref: ncithesaurus:Sternoclavicular_Joint
xref: OpenCyc:Mx4rv_eLJZwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rwI-ZZpwpEbGdrcN5Y29ycA
is_a: UBERON:0000982 ! skeletal joint
[Term]
id: UBERON:0001470
name: glenohumeral joint
alt_id: UBERON:FMA_25912-MA_0000459
def: "The glenohumeral joint, commonly known as the shoulder joint, is a multiaxial synovial ball and socket joint and involves articulation between the glenoid fossa of the scapula (shoulder blade) and the head of the humerus (upper arm bone). [WP,unvetted]." [Wikipedia:Glenohumeral_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "humeral joint" EXACT []
synonym: "joint of shoulder" EXACT [OBOL:automatic]
synonym: "shoulder joint" EXACT []
xref: FMA:25912
xref: GAID:269
xref: galen:ShoulderJoint
xref: HOG:0001002
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a3/Gray327.png/200px-Gray327.png
xref: MA:0000459
xref: ncithesaurus:Shoulder_Joint
xref: OpenCyc:Mx4rwP32BZwpEbGdrcN5Y29ycA
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003839 ! implied link automatically realized ! forelimb joint
is_a: UBERON:0005175 ! implied link automatically realized ! chest organ
relationship: part_of UBERON:0001467
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001471
name: skin of prepuce of penis
alt_id: UBERON:FMA_27648-MA_0001744
def: "A zone of skin that is part of a prepuce of penis [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "foreskin of penis" EXACT []
synonym: "foreskin zone of skin" EXACT [OBOL:automatic]
synonym: "penile prepuce zone of skin" EXACT [OBOL:automatic]
synonym: "penis foreskin" EXACT []
synonym: "prepuce of penis zone of skin" EXACT [OBOL:automatic]
synonym: "prepuce zone of skin" EXACT [OBOL:automatic]
synonym: "preputial skin" EXACT []
synonym: "zone of skin of foreskin" EXACT [OBOL:automatic]
synonym: "zone of skin of penile prepuce" EXACT [OBOL:automatic]
synonym: "zone of skin of prepuce" EXACT [OBOL:automatic]
synonym: "zone of skin of prepuce of penis" EXACT [OBOL:automatic]
xref: FMA:27648
xref: HOG:0001342
xref: MA:0001744
is_a: UBERON:0000014 ! zone of skin
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001332
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001332 ! prepuce of penis
[Term]
id: UBERON:0001472
name: vaginal venous plexus
alt_id: UBERON:FMA_29713-MA_0002257
def: "The vaginal plexuses are placed at the sides of the vagina; they communicate with the uterine, vesical, and hemorrhoidal plexuses, and are drained by the vaginal veins, one on either side, into the hypogastric veins. [WP,unvetted]." [Wikipedia:Vaginal_venous_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "venous vaginal plexus" EXACT []
xref: FMA:29713
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Gray589.png/200px-Gray589.png
xref: MA:0002257
is_a: UBERON:0001593 ! venous plexus
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000996
intersection_of: UBERON:0001593 ! venous plexus
intersection_of: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0001473
name: lymphatic vessel
alt_id: UBERON:FMA_30315-FMA_5034-MA_0000138-MA_0000139-MIAA_0000197-XAO_0000375-ZFA_0005105
def: "Segment of lymphatic tree organ, the wall and lumen of which are continuous with those of the veins, directly or indirectly; together with other lymphatic vessels and lymph nodes, it constitutes the lymphatic tree organ. Examples: bronchomediastinal lymph duct, thoracic duct. // A vessel that contains or conveys lymph. // A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [BTO:0000752, Wikipedia:Lymphatic_vessel, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lymph vessel" EXACT []
xref: BTO:0000752
xref: EFO:0000873
xref: FMA:30315
xref: HOG:0001249
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Illu_lymph_capillary.jpg/200px-Illu_lymph_capillary.jpg
xref: MA:0000138
xref: MAT:0000443
xref: ncithesaurus:Lymphatic_Vessel
xref: OpenCyc:Mx4rwA1fYZwpEbGdrcN5Y29ycA
xref: TAO:0005105
xref: XAO:0000375
xref: ZFA:0005105
is_a: UBERON:0000055 ! vessel
disjoint_from: UBERON:0001981 ! blood vessel
relationship: has_part UBERON:0002391 ! lymph
relationship: part_of UBERON:0004536 ! lymph vasculature
[Term]
id: UBERON:0001474
name: bone
alt_id: UBERON:FMA_30317-MA_0001459-MIAA_0000299-XAO_0000169-ZFA_0001514
def: "The hard form of connective tissue that constitutes the majority of the skeleton // Organ with cavitated organ parts, which primarily consists of compact (cortical) and cancellous bone, which surround bone marrow cavities; together with other bones, cartilages and joints, it constitutes the skeletal system. Examples: femur, sternum, maxilla, vertebra, talus[FMA]" [BTO:0000140, FMA:5018, Wikipedia:Bone, ZFIN:curator]
comment: H&W - a vascularized, supporting skeletal tissue, which also can form ectopically outside the skeleton. Bone consists of cells and a mineralized extracellular matrix that is permeated by canals (canaliculi) that contain osteocyte processes (Plate 2). Bone is deposited by bone-forming cells (osteoblasts), which, when they cease dividing, transform into osteocytes. The first bone matrix deposited is unmineralized and is known as osteoid (Plate 3). Subsequently, osteoid is impregnated with hydroxyapatite to form the mineralized tissue we know as bone, a tissue that is modeled, remodeled, and/or removed by mono- or multinucleated osteoclasts (and sometimes by osteocytes)
subset: uberon_slim
synonym: "bone organ" EXACT []
xref: AAO:0000047
xref: AEO:0000082
xref: BTO:0000140
xref: EFO:0000298
xref: EHDAA2:0003082
xref: ENVO:00002039
xref: FMA:5018
xref: GAID:92
xref: galen:Bone
xref: HOG:0001190
xref: MA:0001459
xref: MAT:0000299
xref: MIAA:0000299
xref: ncithesaurus:Bone
xref: OpenCyc:Mx4rvViDlpwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rvVkCG5wpEbGdrcN5Y29ycA
xref: TAO:0001514
xref: XAO:0000169
xref: ZFA:0001514
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0001434 ! skeletal system
[Term]
id: UBERON:0001475
name: ligament
alt_id: UBERON:FMA_30319-FMA_76821-MA_0000113-MIAA_0000113
comment: made obsolete as it incorrectly grouped classes
is_obsolete: true
consider: UBERON:0000211
consider: UBERON:0002360
[Term]
id: UBERON:0001476
name: deltoid
alt_id: UBERON:FMA_32521-MA_0002286
def: "Intrinsic muscle of shoulder which attaches to the spine of scapula, clavicle and humerus." [Wikipedia:Deltoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EFO:0001412
xref: FMA:32521
xref: HOG:0000846
xref: MA:0002286
xref: ncithesaurus:Deltoid
xref: OpenCyc:Mx4rvVjdc5wpEbGdrcN5Y29ycA
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0001477
name: infraspinatus muscle
alt_id: UBERON:FMA_32546-MA_0002323
def: "The Infraspinatus muscle is a thick triangular muscle, which occupies the chief part of the infraspinatous fossa. The infraspinatus is a muscle of the rotator cuff. [WP,unvetted]." [Wikipedia:Infraspinatus_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "infraspinatus" EXACT []
xref: EHDAA:8305
xref: EHDAA2:0000826
xref: FMA:32546
xref: HOG:0000921
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Arm_muscles_back_numbers.png/200px-Arm_muscles_back_numbers.png
xref: MA:0002323
xref: ncithesaurus:Infraspinatus
xref: OpenCyc:Mx4rwVT4_ZwpEbGdrcN5Y29ycA
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0001478
name: teres major
alt_id: UBERON:FMA_32549-MA_0002392
def: "Teres major is a muscle of the upper limb and one of six scapulohumeral muscles. It is a thick but somewhat flattened muscle. [WP,unvetted]." [Wikipedia:Teres_major]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "teres major muscle" EXACT []
xref: EHDAA:8321
xref: EHDAA2:0002004
xref: FMA:32549
xref: HOG:0000750
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Arm_muscles_back_numbers.png/200px-Arm_muscles_back_numbers.png
xref: MA:0002392
xref: ncithesaurus:Teres_Major_Muscle
xref: OpenCyc:Mx4rwJZqBJwpEbGdrcN5Y29ycA
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0001479
name: sesamoid bone
alt_id: UBERON:FMA_32672-MA_0001375
def: "a bone embedded within a tendon. Sesamoids are found in locations where a tendon passes over a joint, such as the hand, knee, and foot. Functionally, they act to protect the tendon and to increase its mechanical effect. The presence of the sesamoid bone holds the tendon slightly farther away from the center of the joint and thus increases its moment arm. Sesamoid bones also prevent the tendon from flattening into the joint as tension increases and therefore also maintain a more consistent moment arm through a variety of possible tendon loads. This differs from menisci, which are made of cartilage and rather act to disperse the weight of the body on joints and reduce friction during movement." [Wikipedia:Sesamoid_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AEO:0000086
xref: EHDAA2:0003086
xref: FMA:32672
xref: GAID:210
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray350.png/200px-Gray350.png
xref: MA:0001375
xref: ncithesaurus:Sesamoid_Bone
is_a: UBERON:0002428 ! limb bone
[Term]
id: UBERON:0001480
name: proximal carpal bone
alt_id: UBERON:FMA_33302-MA_0002557
comment: This class was created automatically from a combination of ontologies
xref: FMA:33302
xref: MA:0002557
is_a: UBERON:0001435 ! carpal bone
[Term]
id: UBERON:0001481
name: distal carpal bone
alt_id: UBERON:FMA_33303-MA_0002558
comment: This class was created automatically from a combination of ontologies
xref: FMA:33303
xref: MA:0002558
is_a: UBERON:0001435 ! carpal bone
[Term]
id: UBERON:0001482
name: muscle of shoulder
alt_id: UBERON:FMA_33531-MA_0000633
def: "A muscle organ that is part of a shoulder [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "muscle organ of shoulder" EXACT [OBOL:automatic]
synonym: "shoulder muscle" EXACT []
synonym: "shoulder muscle organ" EXACT [OBOL:automatic]
xref: FMA:33531
xref: MA:0000633
is_a: UBERON:0002426 ! implied link automatically realized ! chest muscle
is_a: UBERON:0003662 ! implied link automatically realized ! forelimb muscle
relationship: part_of UBERON:0001467
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001483
name: skin of shoulder
alt_id: UBERON:FMA_34830-MA_0000635
def: "A zone of skin that is part of a shoulder [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "shoulder skin" EXACT []
synonym: "shoulder zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of shoulder" EXACT [OBOL:automatic]
xref: EMAPA:18059
xref: FMA:34830
xref: MA:0000635
is_a: UBERON:0001419 ! skin of limb
is_a: UBERON:0001868 ! implied link automatically realized ! skin of chest
is_a: UBERON:0003531 ! implied link automatically realized ! forelimb skin
relationship: part_of UBERON:0001467
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001419 ! skin of limb
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001484
name: articular capsule
alt_id: UBERON:FMA_34836-MA_0001519
def: "An articular capsule (or joint capsule) is an envelope surrounding a synovial joint. [WP,unvetted]." [Wikipedia:Articular_capsule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fibrous capsule of joint" EXACT []
synonym: "joint capsule" EXACT []
synonym: "joint fibrous capsule" EXACT []
xref: FMA:34836
xref: GAID:263
xref: galen:JointCapsule
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Gray299.png/200px-Gray299.png
xref: MA:0001519
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002217 ! synovial joint
[Term]
id: UBERON:0001485
name: knee joint
alt_id: UBERON:FMA_35175-MA_0000471
def: "The knee joint joins the thigh with the leg and consists of two articulations: one between the femur and tibia, and one between the femur and patella. It is the largest and most complicated joint in the human body. The knee is a mobile trocho-ginglymus (i.e. a pivotal hinge joint), which permits flexion and extension as well as a slight medial and lateral rotation. Since in humans the knee supports nearly the whole weight of the body, it is the joint most vulnerable both to acute injury and the development of osteoarthritis. [WP,unvetted]." [Wikipedia:Knee_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "joint of knee" EXACT [OBOL:automatic]
xref: EFO:0001957
xref: FMA:35175
xref: GAID:114
xref: galen:KneeJoint
xref: HOG:0001003
xref: MA:0000471
xref: ncithesaurus:Knee_Joint
xref: OpenCyc:Mx4rwCuaYZwpEbGdrcN5Y29ycA
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003840 ! implied link automatically realized ! hindlimb joint
relationship: part_of UBERON:0001465
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0001465 ! knee
relationship: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0001486
name: hip joint
alt_id: UBERON:FMA_35178-MA_0000470
def: "." [Wikipedia:Hip_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "articulatio coxofemoralis" EXACT []
synonym: "hip region joint" EXACT [OBOL:automatic]
synonym: "joint of hip" EXACT [OBOL:automatic]
synonym: "joint of hip region" EXACT [OBOL:automatic]
synonym: "joint of regio coxae" EXACT [OBOL:automatic]
synonym: "regio coxae joint" EXACT [OBOL:automatic]
xref: BTO:0001502
xref: FMA:35178
xref: GAID:262
xref: galen:HipJoint
xref: HOG:0001001
xref: MA:0000470
xref: ncithesaurus:Hip_Joint
xref: OpenCyc:Mx4rwP32b5wpEbGdrcN5Y29ycA
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003840 ! implied link automatically realized ! hindlimb joint
relationship: part_of UBERON:0001464
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0001464 ! hip
relationship: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0001487
name: joint of foot
alt_id: UBERON:FMA_35194-MA_0000464
def: "A skeletal joint that is part of a foot [Obol]." [OBOL:automatic]
comment: TODO check FMA - use the set class for now
synonym: "autopod of hind limb joint" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb joint" EXACT [OBOL:automatic]
synonym: "autopod of inferior member joint" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity joint" EXACT [OBOL:automatic]
synonym: "foot joint" EXACT []
synonym: "hind limb autopod joint" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment joint" EXACT [OBOL:automatic]
synonym: "hindlimb autopod joint" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment joint" EXACT [OBOL:automatic]
synonym: "inferior member autopod joint" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment joint" EXACT [OBOL:automatic]
synonym: "joint of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "joint of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "joint of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "joint of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "joint of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "joint of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "joint of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "joint of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "joint of hind limb autopod" EXACT [OBOL:automatic]
synonym: "joint of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "joint of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "joint of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "joint of inferior member autopod" EXACT [OBOL:automatic]
synonym: "joint of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "joint of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "joint of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "joint of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "lower extremity autopod joint" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment joint" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb joint" EXACT [OBOL:automatic]
xref: FMA:35194
xref: FMA:71349
xref: GAID:256
xref: MA:0000464
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003840 ! implied link automatically realized ! hindlimb joint
is_a: UBERON:0003841 ! implied link automatically realized ! autopod joint
relationship: part_of UBERON:0002387
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0001488
name: ankle joint
alt_id: UBERON:FMA_35195-MA_0000463
def: "In human anatomy, the ankle joint is formed where the foot and the leg meet. The ankle, or talocrural joint, is a synovial hinge joint that connects the distal ends of the tibia and fibula in the lower limb with the proximal end of the talus bone in the foot. The articulation between the tibia and the talus bears more weight than between the smaller fibula and the talus. The term 'ankle' is used to describe structures in the region of the ankle joint proper. [WP,unvetted]." [Wikipedia:Ankle_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "joint of ankle" EXACT [OBOL:automatic]
synonym: "talocrural joint" EXACT []
xref: EFO:0001409
xref: FMA:35195
xref: GAID:257
xref: galen:AnkleJoint
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png
xref: MA:0000463
xref: ncithesaurus:Ankle_Joint
xref: OpenCyc:Mx4rvwiy35wpEbGdrcN5Y29ycA
is_a: UBERON:0001487 ! joint of foot
relationship: part_of UBERON:0002388
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002388 ! ankle
relationship: part_of UBERON:0002388 ! ankle
[Term]
id: UBERON:0001489
name: joint of hand
alt_id: UBERON:FMA_35245-MA_0000452
def: "A skeletal joint that is part of a hand [Obol]." [OBOL:automatic]
comment: TODO check FMA - use the set class for now
synonym: "arm autopod joint" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment joint" EXACT [OBOL:automatic]
synonym: "autopod of arm joint" EXACT [OBOL:automatic]
synonym: "autopod of brachial region joint" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb joint" EXACT [OBOL:automatic]
synonym: "brachial region autopod joint" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb joint" EXACT [OBOL:automatic]
synonym: "hand joint" EXACT []
synonym: "joint of arm autopod" EXACT [OBOL:automatic]
synonym: "joint of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "joint of autopod of arm" EXACT [OBOL:automatic]
synonym: "joint of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "joint of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "joint of brachial region autopod" EXACT [OBOL:automatic]
synonym: "joint of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "joint of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "joint of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "joint of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "joint of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "joint of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "joint of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod joint" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment joint" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb joint" EXACT [OBOL:automatic]
xref: FMA:35245
xref: FMA:71345
xref: MA:0000452
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003839 ! implied link automatically realized ! forelimb joint
is_a: UBERON:0003841 ! implied link automatically realized ! autopod joint
relationship: part_of UBERON:0002398
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0001490
name: elbow joint
alt_id: UBERON:FMA_35289-MA_0000451
def: "Synovial joint that is part of the elbow[Obol]. The elbow joint (Articulatio cubiti) is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis[HP]." [Wikipedia:Elbow_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Articulatio cubiti" EXACT []
synonym: "cubital region joint" EXACT [OBOL:automatic]
synonym: "joint of cubital region" EXACT [OBOL:automatic]
synonym: "joint of elbow" EXACT [OBOL:automatic]
xref: FMA:35289
xref: GAID:253
xref: galen:ElbowJoint
xref: HOG:0000997
xref: MA:0000451
xref: ncithesaurus:Elbow_Joint
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003839 ! implied link automatically realized ! forelimb joint
relationship: part_of UBERON:0001461
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0001461 ! elbow
relationship: part_of UBERON:0001461 ! elbow
[Term]
id: UBERON:0001491
name: wrist joint
alt_id: UBERON:FMA_35291-MA_0000460
def: "In human anatomy, the wrist is variously defined as (1) the carpus or carpal bones, the complex of eight bones forming the proximal skeletal segment of the hand; (2) the wrist joint or radiocarpal joint, the joint between the radius and the carpus; and (3) the anatomical region surrounding the carpus including the distal parts of the bones of the forearm and the proximal parts of the metacarpus or five metacarpal bones and the series of joints between these bones, thus referred to as wrist joints. This region also include the carpal tunnel, the anatomical snuff box, the flexor retinaculum, and the extensor retinaculum. As a consequence of these various definitions, fractures to the carpal bones are referred to as carpal fractures, while fractures such as distal radius fracture are considered fractures to the wrist. [WP,unvetted]." [Wikipedia:Wrist_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "carpal region joint" EXACT [OBOL:automatic]
synonym: "joint of carpal region" EXACT [OBOL:automatic]
synonym: "joint of wrist" EXACT []
synonym: "radiocarpal joint" EXACT []
xref: FMA:35291
xref: GAID:274
xref: galen:WristJoint
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Human_wrist.png/200px-Human_wrist.png
xref: MA:0000460
xref: ncithesaurus:Wrist_Joint
xref: OpenCyc:Mx4rvZD2PJwpEbGdrcN5Y29ycA
is_a: UBERON:0001489 ! joint of hand
relationship: part_of UBERON:0001462
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0001462 ! wrist
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001492
name: radial nerve
alt_id: UBERON:FMA_37069-MA_0001171
def: "The radial nerve is a nerve in the human body that supplies the upper limb. It supplies the triceps brachii muscle of the arm, as well as all 12 muscles in the posterior osteofascial compartment of the forearm, as well as the associated joints and overlying skin. It originates from the posterior cord of the brachial plexus with roots from C5, C6, C7, C8 & T1. The radial nerve and its branches supply the dorsal muscles, such as triceps brachii, the extrinsic extensors of the wrist and hands, and the cutaneous nerve supply to most of the back of the hand. (The ulnar nerve cutaneously innervates the back of the little finger and adjacent half of the ring finger). The radial nerve divides into a deep branch (which becomes the posterior interosseous nerve), and continues as the superficial branch which goes on to innervate the dorsum (back) of the hand. [WP,unvetted]." [Wikipedia:Radial_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:5650
xref: EHDAA2:0001584
xref: FMA:37069
xref: GAID:845
xref: HOG:0000896
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Gray818.png/200px-Gray818.png
xref: MA:0001171
xref: ncithesaurus:Radial_Nerve
xref: OpenCyc:Mx4rvfk7E5wpEbGdrcN5Y29ycA
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve
relationship: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001814 ! brachial nerve plexus
[Term]
id: UBERON:0001493
name: axillary nerve
alt_id: UBERON:FMA_37072-MA_0001166
def: "The axillary nerve is a nerve of the human body, that comes off the posterior cord of the brachial plexus at the level of the axilla (armpit) and carries nerve fibers from C5 and C6. The axillary nerve travels through the quadrangular space with the posterior circumflex humeral artery and vein. [WP,unvetted]." [Wikipedia:Axillary_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "circumflex humeral nerve" EXACT []
xref: FMA:37072
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Brachial_plexus.jpg/200px-Brachial_plexus.jpg
xref: MA:0001166
xref: ncithesaurus:Axillary_Nerve
xref: OpenCyc:Mx4rvgwMfpwpEbGdrcN5Y29ycA
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve
is_a: UBERON:0003436 ! implied link automatically realized ! shoulder nerve
relationship: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001814 ! brachial nerve plexus
[Term]
id: UBERON:0001494
name: ulnar nerve
alt_id: UBERON:FMA_37319-MA_0001174
def: "In human anatomy, the ulnar nerve is a nerve which runs near the ulna bone. The ulnar nerve is the largest unprotected nerve in the human body (meaning, unprotected by muscle or bone), and the only unprotected nerve that does not serve a purely sensory function (those nerves specifically meant to perceive changes in the environment, such as nerves in the skin). This nerve is directly connected to the little finger, and the adjacent half of the ring finger, supplying the palmar side of these fingers, including both front and back of the tips, perhaps as far back as the fingernail beds. One method of injuring the nerve is to strike the medial epicondyle of the humerus from posteriorly, or inferiorly with the elbow flexed. The ulnar nerve is trapped between the bone and the overlying skin at this point. This is commonly referred to as hitting one's 'funny bone. ' This name is thought to be a pun, based on the sound resemblance between the words 'humerus' and 'humourous' . [WP,unvetted]." [Wikipedia:Ulnar_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:37319
xref: GAID:846
xref: HOG:0000922
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Brachial_plexus.jpg/200px-Brachial_plexus.jpg
xref: MA:0001174
xref: ncithesaurus:Ulnar_Nerve
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve
relationship: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001814 ! brachial nerve plexus
[Term]
id: UBERON:0001495
name: pectoral muscle
alt_id: UBERON:FMA_37349-MA_0002423
def: "The pectoralis major is a thick, fan-shaped muscle, situated at the upper front of the chest wall. It makes up the bulk of the chest muscles in the male and lies under the breast in the female. Underneath the pectoralis major is the pectoralis minor, a thin, triangular muscle. [WP,unvetted]." [Wikipedia:Pectoral_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "muscle of pectoral part of chest" EXACT []
synonym: "muscle of pectoral region" EXACT []
synonym: "pectoralis muscle" EXACT []
xref: BTO:0000023
xref: FMA:37349
xref: GAID:153
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Pectoralis_major.png/200px-Pectoralis_major.png
xref: MA:0002423
xref: ncithesaurus:Pectoralis_Muscle
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001496
name: ascending aorta
alt_id: UBERON:FMA_3736-MA_0002570
def: "a portion of the aorta commencing at the upper part of the base of the left ventricle, on a level with the lower border of the third costal cartilage behind the left half of the sternum; it passes obliquely upward, forward, and to the right, in the direction of the heart’s axis, as high as the upper border of the second right costal cartilage, describing a slight curve in its course, and being situated, about 6 cm behind the posterior surface of the sternum. The total length is about 5 cm in length [Wikipedia]" [Wikipedia:Ascending_aorta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pars ascendens aortae" EXACT []
xref: EHDAA:9828
xref: EHDAA2:0000147
xref: FMA:3736
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0002570
xref: ncithesaurus:Ascending_Aorta
xref: OpenCyc:Mx4rwVFqO5wpEbGdrcN5Y29ycA
is_a: UBERON:0001515 ! implied link automatically realized ! thoracic aorta
is_a: UBERON:0005800 ! segment of aorta
relationship: part_of UBERON:0001515 ! thoracic aorta
[Term]
id: UBERON:0001497
name: muscle of pelvic girdle
alt_id: UBERON:FMA_37367-MA_0000537
def: "A muscle organ that is part of a pelvic girdle [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "girdle-pelvic muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of girdle-pelvic" EXACT [OBOL:automatic]
synonym: "muscle organ of pelvic girdle" EXACT [OBOL:automatic]
synonym: "muscle organ of pelvic girdle bone" EXACT [OBOL:automatic]
synonym: "pelvic girdle bone muscle organ" EXACT [OBOL:automatic]
synonym: "pelvic girdle muscle" EXACT []
synonym: "pelvic girdle muscle organ" EXACT [OBOL:automatic]
xref: AAO:0000427
xref: FMA:37367
xref: MA:0000537
is_a: UBERON:0001325 ! muscle of pelvis
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0001271
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001271 ! pelvic girdle
[Term]
id: UBERON:0001498
name: muscle of foot
alt_id: UBERON:FMA_37369-MA_0000652
def: "A muscle organ that is part of a foot [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "autopod of hind limb muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of inferior member muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity muscle organ" EXACT [OBOL:automatic]
synonym: "foot muscle" EXACT []
synonym: "foot muscle organ" EXACT [OBOL:automatic]
synonym: "hind limb autopod muscle organ" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "hindlimb autopod muscle organ" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "inferior member autopod muscle organ" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "lower extremity autopod muscle organ" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "muscle organ of foot" EXACT [OBOL:automatic]
synonym: "muscle organ of hind limb autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of inferior member autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb muscle organ" EXACT [OBOL:automatic]
xref: BTO:0000477
xref: FMA:37369
xref: MA:0000652
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0002387
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0001499
name: muscle of arm
alt_id: UBERON:FMA_37370-MA_0000594
def: "A muscle organ that is part of an arm [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "arm muscle" EXACT []
synonym: "arm muscle organ" EXACT [OBOL:automatic]
synonym: "brachial region muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of arm" EXACT [OBOL:automatic]
synonym: "muscle organ of brachial region" EXACT [OBOL:automatic]
synonym: "muscle organ of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
xref: FMA:37370
xref: MA:0000594
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003662 ! implied link automatically realized ! forelimb muscle
relationship: part_of UBERON:0001460
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0001500
name: muscle of hand
alt_id: UBERON:FMA_37372-MA_0000628
def: "A muscle organ that is part of a hand [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "arm autopod muscle organ" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of arm muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of brachial region muscle organ" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
synonym: "brachial region autopod muscle organ" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region muscle organ" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
synonym: "hand muscle" EXACT []
synonym: "hand muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of arm autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of arm" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "muscle organ of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "muscle organ of brachial region autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "muscle organ of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "muscle organ of hand" EXACT [OBOL:automatic]
synonym: "muscle organ of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "muscle organ of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod muscle organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
xref: FMA:37372
xref: MA:0000628
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003662 ! implied link automatically realized ! forelimb muscle
relationship: part_of UBERON:0002398
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0001501
name: lumbrical of hand
alt_id: UBERON:FMA_37385-MA_0002316
comment: This class was created automatically from a combination of ontologies
synonym: "hand lumbrical" EXACT []
synonym: "hand lumbrical muscle" EXACT []
xref: FMA:37385
xref: MA:0002316
is_a: UBERON:0001500 ! muscle of hand
[Term]
id: UBERON:0001502
name: interosseous muscle of hand
alt_id: UBERON:FMA_37417-MA_0002313
comment: This class was created automatically from a combination of ontologies
synonym: "hand interosseous muscle" EXACT []
xref: FMA:37417
xref: MA:0002313
xref: ncithesaurus:Hand_Interosseous_Muscle
is_a: UBERON:0001500 ! muscle of hand
[Term]
id: UBERON:0001503
name: dorsal interosseous of hand
alt_id: UBERON:FMA_37418-MA_0002314
comment: This class was created automatically from a combination of ontologies
synonym: "dorsal hand interosseus muscle" EXACT []
xref: FMA:37418
xref: MA:0002314
is_a: UBERON:0001502 ! interosseous muscle of hand
[Term]
id: UBERON:0001504
name: lumbrical of foot
alt_id: UBERON:FMA_37453-MA_0002305
comment: This class was created automatically from a combination of ontologies
synonym: "foot lumbrical" EXACT []
synonym: "foot lumbrical muscle" EXACT []
xref: FMA:37453
xref: MA:0002305
is_a: UBERON:0001498 ! muscle of foot
[Term]
id: UBERON:0001505
name: coracobrachialis
alt_id: UBERON:FMA_37664-MA_0002282
def: "The Coracobrachialis is the smallest of the three muscles that attach to the coracoid process of the scapula. (The other two muscles are pectoralis minor and biceps brachii. ) It is situated at the upper and medial part of the arm. It is perforated by and innervated by the musculocutaneous nerve. [WP,unvetted]." [Wikipedia:Coracobrachialis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "coracobrachial" EXACT []
synonym: "Pirogoff's aponeurosis" EXACT []
xref: FMA:37664
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Coracobrachialis.png/200px-Coracobrachialis.png
xref: MA:0002282
xref: ncithesaurus:Coracobrachialis
is_a: UBERON:0001499 ! muscle of arm
relationship: part_of UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0001506
name: brachialis
alt_id: UBERON:FMA_37667-MA_0002271
def: "The brachialis (brachialis anticus) is a muscle in the upper arm that flexes the elbow joint. It lies just deep of the biceps brachii, and is a synergist that assists the biceps brachii in flexing at the elbow. It makes up part of the floor of the region known as the cubital fossa. [WP,unvetted]." [Wikipedia:Brachialis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Casserio's muscle" EXACT []
xref: EHDAA:8281
xref: EHDAA2:0000181
xref: FMA:37667
xref: HOG:0001026
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Brachialis.png/200px-Brachialis.png
xref: MA:0002271
xref: ncithesaurus:Brachialis
is_a: UBERON:0001499 ! muscle of arm
[Term]
id: UBERON:0001507
name: biceps brachii
alt_id: UBERON:FMA_37670-MA_0002269
def: "In human anatomy, the biceps brachii is a muscle located on the upper arm. The biceps has several functions, the most important being to rotate the forearm and to flex the elbow. [WP,unvetted]." [Wikipedia:Biceps_brachii]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003419
xref: FMA:37670
xref: HOG:0000861
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Biceps_%28PSF%29.jpg/200px-Biceps_%28PSF%29.jpg
xref: MA:0002269
is_a: UBERON:0001499 ! muscle of arm
relationship: part_of UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0001508
name: arch of aorta
alt_id: UBERON:FMA_3768-MA_0000475-MIAA_0000059
def: "begins at the level of the upper border of the second sternocostal articulation of the right side, and runs at first upward, backward, and to the left in front of the trachea; it is then directed backward on the left side of the trachea and finally passes downward on the left side of the body of the fourth thoracic vertebra, at the lower border of which it becomes continuous with the descending aorta[WP]." [Wikipedia:Arch_of_aorta]
comment: Do not confuse with aortic arch
subset: uberon_slim
synonym: "aortic arch" RELATED [FMA:3768]
synonym: "thoracic aorta" RELATED [GAID:471]
xref: EFO:0002526
xref: EHDAA2:0000132
xref: FMA:3768
xref: GAID:471
xref: HOG:0001196
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0000475
is_a: UBERON:0001515 ! implied link automatically realized ! thoracic aorta
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005800 ! segment of aorta
relationship: develops_from UBERON:0003121 ! aortic arch 4
relationship: part_of UBERON:0001515 ! thoracic aorta
[Term]
id: UBERON:0001509
name: triceps brachii
alt_id: UBERON:FMA_37688-MA_0002399
def: "The triceps brachii muscle (Latin for 'three-headed' muscle of the arm, it is called a three headed muscle because there are three bundles of muscle, each of different origin, joining together at the elbow) is the large muscle on the back of the human upper limb. It is the muscle principally responsible for extension of the elbow joint (i.e. straightening of the arm). Though a similarly-named muscle, the triceps surae, is found on the lower leg, the triceps brachii is commonly called simply the 'triceps'. [WP,unvetted]." [Wikipedia:Triceps_brachii]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:37688
xref: HOG:0000851
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/83/Triceps_brachii.png/200px-Triceps_brachii.png
xref: MA:0002399
is_a: UBERON:0001499 ! muscle of arm
[Term]
id: UBERON:0001510
name: skin of knee
alt_id: UBERON:FMA_37800-MA_0000668
def: "A zone of skin that is part of a knee [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "knee skin" EXACT []
synonym: "knee zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of knee" EXACT [OBOL:automatic]
xref: EMAPA:18151
xref: FMA:37800
xref: MA:0000668
xref: ncithesaurus:Knee_Skin
is_a: UBERON:0001419 ! skin of limb
is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin
relationship: part_of UBERON:0001465
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001465 ! knee
relationship: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0001511
name: skin of leg
alt_id: UBERON:FMA_37828-MA_0000674
def: "A zone of skin that is part of a leg [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "leg skin" EXACT []
synonym: "leg zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of leg" EXACT [OBOL:automatic]
xref: FMA:37828
xref: MA:0000674
xref: ncithesaurus:Leg_Skin
is_a: UBERON:0001419 ! skin of limb
is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin
relationship: part_of UBERON:0000978
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001512
name: skin of ankle
alt_id: UBERON:FMA_37831-MA_0000641
def: "A zone of skin that is part of an ankle [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "ankle skin" EXACT []
synonym: "ankle zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of ankle" EXACT [OBOL:automatic]
xref: FMA:37831
xref: MA:0000641
xref: ncithesaurus:Ankle_Skin
is_a: UBERON:0001419 ! skin of limb
is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin
relationship: part_of UBERON:0002388
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002388 ! ankle
relationship: part_of UBERON:0002388 ! ankle
[Term]
id: UBERON:0001513
name: skin of foot
alt_id: UBERON:FMA_37834-MA_0000654
def: "A zone of skin that is part of a foot [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "autopod of hind limb zone of skin" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb zone of skin" EXACT [OBOL:automatic]
synonym: "autopod of inferior member zone of skin" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity zone of skin" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb zone of skin" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb zone of skin" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member zone of skin" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity zone of skin" EXACT [OBOL:automatic]
synonym: "foot skin" EXACT []
synonym: "foot zone of skin" EXACT [OBOL:automatic]
synonym: "hind limb autopod zone of skin" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment zone of skin" EXACT [OBOL:automatic]
synonym: "hindlimb autopod zone of skin" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment zone of skin" EXACT [OBOL:automatic]
synonym: "inferior member autopod zone of skin" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment zone of skin" EXACT [OBOL:automatic]
synonym: "lower extremity autopod zone of skin" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment zone of skin" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "zone of skin of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "zone of skin of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "zone of skin of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "zone of skin of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "zone of skin of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "zone of skin of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "zone of skin of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "zone of skin of foot" EXACT [OBOL:automatic]
synonym: "zone of skin of hind limb autopod" EXACT [OBOL:automatic]
synonym: "zone of skin of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "zone of skin of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "zone of skin of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "zone of skin of inferior member autopod" EXACT [OBOL:automatic]
synonym: "zone of skin of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "zone of skin of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "zone of skin of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "zone of skin of terminal segment of free lower limb" EXACT [OBOL:automatic]
xref: FMA:37834
xref: MA:0000654
xref: ncithesaurus:Foot_Skin
is_a: UBERON:0001419 ! skin of limb
is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin
relationship: part_of UBERON:0002387
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0001514
name: descending aorta
alt_id: UBERON:FMA_3784-MA_0002571
def: "The descending aorta is part of the aorta, the largest artery in the body. The descending aorta is the part of the aorta beginning at the aortic arch that runs down through the chest and abdomen. The descending aorta is divided into two portions, the thoracic and abdominal, in correspondence with the two great cavities of the trunk in which it is situated. Within the abdomen, the descending aorta branches into the two common iliac arteries which serve the legs. [WP,unvetted]." [Wikipedia:Descending_aorta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pars descendens aortae" EXACT []
xref: FMA:3784
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0002571
xref: ncithesaurus:Descending_Aorta
xref: OpenCyc:Mx4rv4EE35wpEbGdrcN5Y29ycA
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0005800 ! segment of aorta
relationship: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0001515
name: thoracic aorta
alt_id: UBERON:FMA_3786-MA_0002569
def: "The thoracic aorta is contained in the posterior mediastinal cavity. It begins at the lower border of the fourth thoracic vertebra where it is continuous with the aortic arch, and ends in front of the lower border of the twelfth thoracic vertebra, at the aortic hiatus in the diaphragm where it becomes the abdominal aorta. At its commencement, it is situated on the left of the vertebral column; it approaches the median line as it descends; and, at its termination, lies directly in front of the column. The vessel describes a curve which is concave forward; as the branches given off from it are small, its diminution in size is insignificant. It has a radius of approximately 1.16 cm. [WP,unvetted]." [Wikipedia:Thoracic_aorta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adult aorta of thorax" EXACT [OBOL:automatic]
synonym: "aorta of thorax" EXACT [OBOL:automatic]
synonym: "thoracic part of aorta" EXACT []
synonym: "thorax adult aorta" EXACT [OBOL:automatic]
synonym: "thorax aorta" EXACT [OBOL:automatic]
synonym: "thorax dorsal aorta" EXACT [OBOL:automatic]
synonym: "thorax trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree of thorax" EXACT [OBOL:automatic]
xref: EFO:0002525
xref: FMA:3786
xref: GAID:471
xref: galen:ThoracicAorta
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Gray530.png/200px-Gray530.png
xref: MA:0002569
xref: ncithesaurus:Thoracic_Aorta
xref: OpenCyc:Mx4rveb9TpwpEbGdrcN5Y29ycA
is_a: UBERON:0000947 ! aorta
is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel
is_a: UBERON:0005800 ! implied link automatically realized ! segment of aorta
relationship: part_of UBERON:0000915
intersection_of: UBERON:0005800 ! segment of aorta
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0001516
name: abdominal aorta
alt_id: UBERON:FMA_3789-MA_0000474
def: "The abdominal aorta is the largest artery in the abdominal cavity. As part of the aorta, it is a direct continuation of descending aorta(of the thorax). [WP,unvetted]." [Wikipedia:Abdominal_aorta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "abdomen adult aorta" EXACT [OBOL:automatic]
synonym: "abdomen aorta" EXACT [OBOL:automatic]
synonym: "abdomen dorsal aorta" EXACT [OBOL:automatic]
synonym: "abdomen trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "abdominal part of aorta" EXACT []
synonym: "adult aorta of abdomen" EXACT [OBOL:automatic]
synonym: "aorta of abdomen" EXACT [OBOL:automatic]
synonym: "descending abdominal aorta" EXACT []
synonym: "dorsal aorta of abdomen" EXACT [OBOL:automatic]
synonym: "pars abdominalis aortae" EXACT []
synonym: "trunk of aortic tree of abdomen" EXACT [OBOL:automatic]
xref: BTO:0002976
xref: EFO:0002524
xref: FMA:3789
xref: GAID:470
xref: galen:AbdominalAorta
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray531.png/200px-Gray531.png
xref: MA:0000474
xref: ncithesaurus:Abdominal_Aorta
xref: OpenCyc:Mx4rvYhWCZwpEbGdrcN5Y29ycA
is_a: UBERON:0000947 ! aorta
is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel
relationship: part_of UBERON:0000916
intersection_of: UBERON:0000947 ! aorta
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0001514 ! descending aorta
[Term]
id: UBERON:0001517
name: skin of elbow
alt_id: UBERON:0003399
alt_id: UBERON:FMA_38250-MA_0000610
def: "A zone of skin that is part of a elbow [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "cubital region zone of skin" EXACT [OBOL:automatic]
synonym: "elbow skin" EXACT []
synonym: "elbow zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of cubital region" EXACT [OBOL:automatic]
synonym: "zone of skin of elbow" EXACT [OBOL:automatic]
xref: EMAPA:18051
xref: FMA:38250
xref: MA:0000610
xref: ncithesaurus:Elbow_Skin
is_a: UBERON:0002427 ! arm skin
relationship: part_of UBERON:0001461
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001461 ! elbow
relationship: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001461 ! elbow
[Term]
id: UBERON:0001518
name: skin of wrist
alt_id: UBERON:FMA_38280-MA_0000638
def: "A zone of skin that is part of a wrist [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "carpal region zone of skin" EXACT [OBOL:automatic]
synonym: "wrist skin" EXACT []
synonym: "wrist zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of carpal region" EXACT [OBOL:automatic]
synonym: "zone of skin of wrist" EXACT [OBOL:automatic]
xref: FMA:38280
xref: MA:0000638
xref: ncithesaurus:Wrist_Skin
is_a: UBERON:0001419 ! skin of limb
is_a: UBERON:0002427 ! implied link automatically realized ! arm skin
relationship: part_of UBERON:0001462
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001462 ! wrist
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001519
name: skin of hand
alt_id: UBERON:FMA_38295-MA_0000630
def: "A zone of skin that is part of a hand [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "arm autopod zone of skin" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment zone of skin" EXACT [OBOL:automatic]
synonym: "autopod of arm zone of skin" EXACT [OBOL:automatic]
synonym: "autopod of brachial region zone of skin" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb zone of skin" EXACT [OBOL:automatic]
synonym: "brachial region autopod zone of skin" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment zone of skin" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm zone of skin" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region zone of skin" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb zone of skin" EXACT [OBOL:automatic]
synonym: "hand skin" EXACT []
synonym: "hand zone of skin" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod zone of skin" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment zone of skin" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of arm autopod" EXACT [OBOL:automatic]
synonym: "zone of skin of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "zone of skin of autopod of arm" EXACT [OBOL:automatic]
synonym: "zone of skin of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "zone of skin of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "zone of skin of brachial region autopod" EXACT [OBOL:automatic]
synonym: "zone of skin of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "zone of skin of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "zone of skin of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "zone of skin of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "zone of skin of hand" EXACT [OBOL:automatic]
synonym: "zone of skin of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "zone of skin of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "zone of skin of terminal segment of free upper limb" EXACT [OBOL:automatic]
xref: FMA:38295
xref: MA:0000630
xref: ncithesaurus:Hand_Skin
is_a: UBERON:0001419 ! skin of limb
is_a: UBERON:0003531 ! implied link automatically realized ! forelimb skin
relationship: part_of UBERON:0002398
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0001520
name: pronator teres
alt_id: UBERON:FMA_38450-MA_0002357
def: "The pronator teres is a muscle of the human body (located mainly in the forearm) that, along with the pronator quadratus, serves to pronate the forearm (turning it so the palm faces posteriorly). [WP,unvetted]." [Wikipedia:Pronator_teres]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:38450
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Pronator-teres.png/200px-Pronator-teres.png
xref: MA:0002357
xref: ncithesaurus:Pronator_Teres
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001521
name: flexor carpi radialis
alt_id: UBERON:FMA_38459-MA_0002297
def: "In anatomy, flexor carpi radialis is a muscle of the human forearm that acts to flex and abduct the hand. [WP,unvetted]." [Wikipedia:Flexor_carpi_radialis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:38459
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Flexor-carpi-radialis.png/200px-Flexor-carpi-radialis.png
xref: MA:0002297
xref: ncithesaurus:Flexor_Carpi_Radialis
is_a: UBERON:0000366 ! flexor muscle
is_a: UBERON:0004255 ! implied link automatically realized ! upper arm muscle
relationship: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0001522
name: flexor carpi ulnaris
alt_id: UBERON:FMA_38465-MA_0002298
def: "The flexor carpi ulnaris muscle (FCU) is a muscle of the human forearm that acts to flex and adduct the hand. [WP,unvetted]." [Wikipedia:Flexor_carpi_ulnaris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:38465
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/FCU.png/200px-FCU.png
xref: MA:0002298
xref: ncithesaurus:Flexor_Carpi_Ulnaris
is_a: UBERON:0000366 ! flexor muscle
is_a: UBERON:0004255 ! implied link automatically realized ! upper arm muscle
relationship: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0001523
name: flexor digitorum profundus
alt_id: UBERON:FMA_38478-MA_0002300
def: "In human anatomy, the flexor digitorum profundus is a muscle in the forearm that flexes the fingers. It is considered to be an extrinsic muscle because its action is at a different location than the main body of the muscle. Flexor digitorum profundus, along with flexor digitorum superficialis have long tendons that run down the arm and through the carpal tunnel and attach to the palmar side of the phalanges of the fingers. This muscle originates from the upper 3/4ths anterior and medial side of the ulna. Flexor digitorum profundus lies deep to superficialis, but it attaches more distally. To get around this problem profundus's tendons go through the tendons of superficialis, and end up attaching to the distal phalanx. [WP,unvetted]." [Wikipedia:Flexor_digitorum_profundus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001246
xref: FMA:38478
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/24/Flexor-digitorum-profundis.png/200px-Flexor-digitorum-profundis.png
xref: MA:0002300
xref: ncithesaurus:Flexor_Digitorum_Profundus
is_a: UBERON:0000366 ! flexor muscle
is_a: UBERON:0004255 ! implied link automatically realized ! upper arm muscle
relationship: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0001524
name: extensor carpi radialis longus
alt_id: UBERON:FMA_38494-MA_0002291
def: "Extensor carpi radialis longus is one of the five main muscles that control movements at the wrist. This muscle is quite long, starting on the lateral side of the humerus, and attaching to the base of the second metacarpal bone (metacarpal of the index finger). [WP,unvetted]." [Wikipedia:Extensor_carpi_radialis_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:38494
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/ECR-longus.png/200px-ECR-longus.png
xref: MA:0002291
xref: ncithesaurus:Extensor_Carpi_Radialis_Longus
is_a: UBERON:0000311 ! extensor muscle
is_a: UBERON:0001499 ! implied link automatically realized ! muscle of arm
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001525
name: extensor carpi radialis brevis
alt_id: UBERON:FMA_38497-MA_0002290
def: "The Extensor carpi radialis brevis is shorter and thicker than the extensor carpi radialis longus. The longus muscle can be found above the distal end of the Extensor carpi radialis brevis. [WP,unvetted]." [Wikipedia:Extensor_carpi_radialis_brevis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:38497
xref: MA:0002290
xref: ncithesaurus:Extensor_Carpi_Radialis_Brevis
is_a: UBERON:0000311 ! extensor muscle
is_a: UBERON:0001499 ! implied link automatically realized ! muscle of arm
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001526
name: extensor carpi ulnaris
alt_id: UBERON:FMA_38506-MA_0002292
def: "Extensor carpi ulnaris is a muscle located in the human forearm that acts to extend and adduct the wrist. Being an extensor muscle, extensor carpi ulnaris is on the posterior side of the forearm. [WP,unvetted]." [Wikipedia:Extensor_carpi_ulnaris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:38506
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray418.png/200px-Gray418.png
xref: MA:0002292
xref: ncithesaurus:Extensor_Carpi_Ulnaris
is_a: UBERON:0000311 ! extensor muscle
is_a: UBERON:0001499 ! implied link automatically realized ! muscle of arm
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001527
name: abductor pollicis longus
alt_id: UBERON:FMA_38515-MA_0002266
def: "The Abductor pollicis longus lies immediately below the Supinator and is sometimes united with it. [WP,unvetted]." [Wikipedia:Abductor_pollicis_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:38515
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray1231.png/200px-Gray1231.png
xref: MA:0002266
xref: ncithesaurus:Abductor_Pollicis_Longus
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001528
name: radio-ulnar joint
alt_id: UBERON:FMA_38863-MA_0000462
def: "The forearm is the structure and distal region of the upper limb, between the elbow and the wrist.. The term forearm is used in anatomy to distinguish it from the arm which is often misused to describe the entire appendage of the upper limb and technically means only the region of the upper arm whereas the lower 'arm' is called the forearm. It is homologous to the leg that lies between the knee and the ankle joints. [WP,unvetted]." [Wikipedia:Radio-ulnar_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "radioulnar joint" EXACT []
xref: FMA:38863
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Forearm_labeled.png/200px-Forearm_labeled.png
xref: MA:0000462
xref: OpenCyc:Mx4rvlO2nJwpEbGdrcN5Y29ycA
is_a: UBERON:0001491 ! wrist joint
[Term]
id: UBERON:0001529
name: brachiocephalic artery
alt_id: UBERON:FMA_3932-MA_0001922
def: "The brachiocephalic artery (or brachiocephalic trunk or innominate artery) is an artery of the mediastinum that supplies blood to the right arm and the head and neck. It is the first branch of the aortic arch, and soon after it emerges, the brachiocephalic artery divides into the right common carotid artery and the right subclavian artery. There is no brachiocephalic artery for the left side of the body. The left common carotid, and the left subclavian artery, come directly off the aortic arch. However, there are two brachiocephalic veins. [WP,unvetted]." [Wikipedia:Brachiocephalic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "brachiocephalic trunk" EXACT []
synonym: "innominate artery" RELATED []
xref: EFO:0002550
xref: FMA:3932
xref: GAID:476
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0001922
xref: ncithesaurus:Innominate_Artery
xref: OpenCyc:Mx4rv9mMTpwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001530
name: common carotid artery
alt_id: UBERON:FMA_3939-ZFA_0000097
def: "Artery originating at the junction of the first two aortic arches and supplying the anterior brain. Kimmel et al, 1995." [Wikipedia:Common_carotid_artery, ZFIN:curator]
comment: FMA says exact synonym with carotid
subset: uberon_slim
synonym: "carotid artery" BROAD [FMA:3939]
synonym: "trunk of common carotid tree" EXACT []
xref: EHDAA:7331
xref: EHDAA2:0000306
xref: FMA:3939
xref: GAID:479
xref: HOG:0000272
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0001926
is_a: UBERON:0005396 ! carotid artery
[Term]
id: UBERON:0001531
name: right common carotid artery
alt_id: UBERON:FMA_3941-MA_0001928
def: "In human anatomy, the common carotid artery is an artery that supplies the head and neck with oxygenated blood; it divides in the neck to form the external and internal carotid arteries. [WP,unvetted]." [Wikipedia:Right_common_carotid_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "trunk of right common carotid tree" EXACT []
xref: FMA:3941
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0001928
xref: ncithesaurus:Right_Common_Carotid_Artery
xref: OpenCyc:Mx4rtW9-AqgEEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvg7rcJwpEbGdrcN5Y29ycA
is_a: UBERON:0001530 ! common carotid artery
[Term]
id: UBERON:0001532
name: internal carotid artery
alt_id: UBERON:FMA_3947-MA_0001930-XAO_0000366-ZFA_0005081
def: "In human anatomy, the internal carotid artery is a major artery of the head and neck that helps supply blood to the brain. [WP,unvetted]." [Wikipedia:Internal_carotid_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ICA" RELATED []
xref: EFO:0001952
xref: EHDAA:408
xref: EHDAA:6389
xref: EHDAA2:0000873
xref: FMA:3947
xref: GAID:481
xref: HOG:0000267
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray513.png/200px-Gray513.png
xref: MA:0001930
xref: ncithesaurus:Internal_Carotid_Artery
xref: OpenCyc:Mx4rvYx8KZwpEbGdrcN5Y29ycA
xref: TAO:0005081
xref: XAO:0000366
xref: ZFA:0005081
is_a: UBERON:0005396 ! carotid artery
relationship: part_of UBERON:0001530 ! common carotid artery
[Term]
id: UBERON:0001533
name: subclavian artery
alt_id: UBERON:FMA_3951-MA_0002045-ZFA_0005086
def: "The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch. Kimmel et al. 1993" [Wikipedia:Subclavian_artery, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arterial tree of upper limb" EXACT []
synonym: "PA" RELATED []
synonym: "pectoral artery" EXACT []
synonym: "subclavian arterial tree" EXACT []
xref: EHDAA:4357
xref: EHDAA2:0001933
xref: FMA:3951
xref: GAID:511
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0002045
xref: ncithesaurus:Subclavian_Artery
xref: OpenCyc:Mx4rvp8u1JwpEbGdrcN5Y29ycA
xref: TAO:0005086
xref: ZFA:0005086
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001534
name: right subclavian artery
alt_id: UBERON:FMA_3953-MA_0002047
def: "In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib. [WP,unvetted]." [Wikipedia:Right_subclavian_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:3953
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0002047
xref: ncithesaurus:Right_Subclavian_Artery
xref: OpenCyc:Mx4rtW7hwqgEEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvp8u1JwpEbGdrcN5Y29ycA
is_a: UBERON:0001533 ! subclavian artery
[Term]
id: UBERON:0001535
name: vertebral artery
alt_id: UBERON:FMA_3956-MA_0002077-ZFA_0005033
def: "The vertebral arteries are branches of the subclavian arteries. The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted]." [Wikipedia:Vertebral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:5328
xref: EHDAA2:0002192
xref: FMA:3956
xref: GAID:518
xref: HOG:0000263
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/ff/Vertebral_artery.png/200px-Vertebral_artery.png
xref: MA:0002077
xref: ncithesaurus:Vertebral_Artery
xref: OpenCyc:Mx4rvg_ir5wpEbGdrcN5Y29ycA
xref: TAO:0005033
xref: ZFA:0005033
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0001533 ! subclavian artery
[Term]
id: UBERON:0001536
name: left common carotid artery
alt_id: UBERON:FMA_4058-MA_0001927
def: "In human anatomy, the common carotid artery is an artery that supplies the head and neck with oxygenated blood; it divides in the neck to form the external and internal carotid arteries. [WP,unvetted]." [Wikipedia:Left_common_carotid_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "trunk of left common carotid tree" EXACT []
xref: FMA:4058
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0001927
xref: ncithesaurus:Left_Common_Carotid_Artery
xref: OpenCyc:Mx4rdz4xcLVIEduAAAAOpmP6tw
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvg7rcJwpEbGdrcN5Y29ycA
is_a: UBERON:0001530 ! common carotid artery
[Term]
id: UBERON:0001537
name: anterior tibial artery
alt_id: UBERON:FMA_43894-MA_0002574
def: "The anterior tibial artery of the lower limb carries blood to the anterior compartment of the leg and dorsal surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the anterior tibial vein, along its course. It crosses the anterior aspect of the ankle joint, at which point it becomes the dorsalis pedis artery. [WP,unvetted]." [Wikipedia:Anterior_tibial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:43894
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray1247.png/200px-Gray1247.png
xref: MA:0002574
xref: ncithesaurus:Anterior_Tibial_Artery
xref: OpenCyc:Mx4rvaHcEZwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001538
name: posterior tibial artery
alt_id: UBERON:FMA_43895-MA_0002575
def: "The posterior tibial artery of the lower limb carries blood to the posterior compartment of the leg and plantar surface of the foot, from the popliteal artery. It is accompanied by a deep vein, the posterior tibial vein, along its course. [WP,unvetted]." [Wikipedia:Posterior_tibial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:43895
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray1247.png/200px-Gray1247.png
xref: MA:0002575
xref: ncithesaurus:Posterior_Tibial_Artery
xref: OpenCyc:Mx4rwLSaQ5wpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001539
name: dorsalis pedis artery
alt_id: UBERON:FMA_43915-MA_0001942
def: "In human anatomy, the dorsalis pedis artery (dorsal artery of foot), is a blood vessel of the lower limb that carries oxygenated blood to the dorsal surface of the foot. It arises at the anterior aspect of the ankle joint and is a continuation of the anterior tibial artery. It terminates at the proximal part of the first intermetatarsal space, where it divides into two branches, the first dorsal metatarsal artery and the deep plantar artery. Along its course, it is accompanied by a deep vein, the dorsalis pedis vein. [WP,unvetted]." [Wikipedia:Dorsalis_pedis_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dorsal artery of foot" EXACT []
xref: FMA:43915
xref: galen:DorsalisPedisArtery
xref: MA:0001942
xref: ncithesaurus:Dorsalis_Pedis_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001540
name: peroneal artery
alt_id: UBERON:FMA_43921-MA_0002018
def: "In anatomy, the fibular artery (also known as the peroneal artery) supplies blood to the lateral compartment of the leg and is typically a branch of posterior tibial artery. [WP,unvetted]." [Wikipedia:Peroneal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fibular artery" EXACT []
xref: FMA:43921
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Fibular_artery.png/200px-Fibular_artery.png
xref: MA:0002018
xref: ncithesaurus:Peroneal_Artery
xref: OpenCyc:Mx4rwSO_s5wpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0001538 ! posterior tibial artery
[Term]
id: UBERON:0001541
name: medial plantar artery
alt_id: UBERON:FMA_43925-MA_0001997
def: "The medial plantar artery (internal plantar artery), much smaller than the lateral, passes forward along the medial side of the foot. It is at first situated above the Abductor hallucis, and then between it and the Flexor digitorum brevis, both of which it supplies. At the base of the first metatarsal bone, where it is much diminished in size, it passes along the medial border of the first toe, anastomosing with the first dorsal metatarsal artery. Small superficial digital branches accompany the digital branches of the medial plantar nerve and join the plantar metatarsal arteries of the first three spaces. [WP,unvetted]." [Wikipedia:Medial_plantar_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:43925
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray555.png/200px-Gray555.png
xref: MA:0001997
xref: ncithesaurus:Medial_Plantar_Artery
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0001538 ! posterior tibial artery
[Term]
id: UBERON:0001542
name: inguinal lymph node
alt_id: UBERON:FMA_44226-MA_0000737
def: "A lymph node in the inguinal region." [Wikipedia:Inguinal_lymph_node]
comment: TODO - superficial/deep
subset: uberon_slim
xref: FMA:44226
xref: MA:0000737
xref: ncithesaurus:Inguinal_Lymph_Node
is_a: UBERON:0003968 ! peripheral lymph node
[Term]
id: UBERON:0001543
name: popliteal lymph node
alt_id: UBERON:FMA_44227-MA_0000738
def: "The popliteal lymph nodes, small in size and some six or seven in number, are imbedded in the fat contained in the popliteal fossa. One lies immediately beneath the popliteal fascia, near the terminal part of the small saphenous vein, and drains the region from which this vein derives its tributaries. Another is placed between the popliteal artery and the posterior surface of the knee-joint; it receives the lymphatic vessels from the knee-joint together with those which accompany the genicular arteries. The others lie at the sides of the popliteal vessels, and receive as efferents the trunks which accompany the anterior and posterior tibial vessels. The efferents of the popliteal glands pass almost entirely alongside the femoral vessels to the deep inguinal glands, but a few may accompany the great saphenous vein, and end in the glands of the superficial subinguinal group. [WP,unvetted]." [Wikipedia:Popliteal_lymph_node]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:44227
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray609.png/200px-Gray609.png
xref: MA:0000738
xref: ncithesaurus:Popliteal_Lymph_Node
is_a: UBERON:0003968 ! peripheral lymph node
[Term]
id: UBERON:0001544
name: popliteal vein
alt_id: UBERON:FMA_44327-MA_0002197
def: "The popliteal vein course runs alongside the popliteal artery but carries the blood from the knee joint and muscles in the thigh and calf back to the heart. Its origin is defined by the junction of the posterior tibial vein and anterior tibial vein. It drains the peroneal vein before reaching the knee joint and turns into the femoral vein when leaving the adductor canal (also known as Hunter's canal). The popliteal artery extends from the femoral artery behind the popliteal fossa which is the space behind the knee. [WP,unvetted]." [Wikipedia:Popliteal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:44327
xref: GAID:537
xref: galen:PoplitealVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray609.png/200px-Gray609.png
xref: MA:0002197
xref: ncithesaurus:Popliteal_Vein
xref: OpenCyc:Mx4rv8Ch-JwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel
relationship: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0001545
name: anterior tibial vein
alt_id: UBERON:FMA_44331-MA_0002244
def: "In human anatomy, the anterior tibial vein of the lower limb carries blood from the anterior compartment of the leg to the popliteal vein which is forms when it joins with the posterior tibial vein. Like most deep veins, the anterior tibial vein is accompanied by an artery of the same name, the anterior tibial artery, along its course. [WP,unvetted]." [Wikipedia:Anterior_tibial_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:44331
xref: galen:AnteriorTibialVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4e/Gray440_color.png/200px-Gray440_color.png
xref: MA:0002244
xref: ncithesaurus:Anterior_Tibial_Vein
xref: OpenCyc:Mx4rvXYDl5wpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003503 ! implied link automatically realized ! leg blood vessel
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001546
name: posterior tibial vein
alt_id: UBERON:FMA_44332-MA_0002245
def: "In anatomy, the posterior tibial vein of the lower limb carries blood from the posterior compartment and plantar surface of the foot to the popliteal vein which it forms when it joins with the anterior tibial vein. Like most deep veins, the posterior tibial vein is accompanied by an artery of the same name, the posterior tibial artery, along its course. [WP,unvetted]." [Wikipedia:Posterior_tibial_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:44332
xref: galen:PosteriorTibialVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray583.png/200px-Gray583.png
xref: MA:0002245
xref: ncithesaurus:Posterior_Tibial_Vein
xref: OpenCyc:Mx4rwA9GD5wpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001547
name: small saphenous vein
alt_id: UBERON:FMA_44333-MA_0002217
def: "The small saphenous vein (also lesser saphenous vein), is a relatively large vein of the superficial posterior leg. [WP,unvetted]." [Wikipedia:Small_saphenous_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lesser saphenous vein" EXACT []
synonym: "short saphenous vein" EXACT []
xref: BTO:0003272
xref: FMA:44333
xref: galen:LesserSaphenousVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/62/Gray582.png/200px-Gray582.png
xref: MA:0002217
xref: ncithesaurus:Short_Saphenous_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001548
name: lateral marginal vein
alt_id: UBERON:FMA_44359-MA_0002160
comment: This class was created automatically from a combination of ontologies
synonym: "lateral marginal vein of foot" EXACT []
synonym: "vena marginalis lateralis" EXACT []
xref: FMA:44359
xref: MA:0002160
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001549
name: dorsal metatarsal vein
alt_id: UBERON:FMA_44377-MA_0002105
def: "The dorsal metatarsal veins are veins which drain the metatarsus of the foot. [WP,unvetted]." [Wikipedia:Dorsal_metatarsal_veins]
comment: This class was created automatically from a combination of ontologies
synonym: "metatarsal vein" EXACT []
xref: FMA:44377
xref: MA:0002105
xref: ncithesaurus:Dorsal_Metatarsal_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001550
name: medial marginal vein
alt_id: UBERON:FMA_44420-MA_0002171
comment: This class was created automatically from a combination of ontologies
synonym: "medial marginal vein of foot" EXACT []
synonym: "vena marginalis medialis" EXACT []
xref: FMA:44420
xref: MA:0002171
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001551
name: sural vein
alt_id: UBERON:FMA_44561-MA_0002231
comment: This class was created automatically from a combination of ontologies
xref: FMA:44561
xref: MA:0002231
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001552
name: arcuate artery
alt_id: UBERON:FMA_44594-MA_0002583
def: "." [Wikipedia:Arcuate_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:44594
xref: MA:0002583
is_a: UBERON:0001637 ! artery
is_a: UBERON:0005268 ! implied link automatically realized ! renal cortex artery
relationship: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0001553
name: medial tarsal artery
alt_id: UBERON:FMA_44598-MA_0001998
comment: This class was created automatically from a combination of ontologies
xref: FMA:44598
xref: MA:0001998
xref: ncithesaurus:Medial_Tarsal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001554
name: skin of hip
alt_id: UBERON:FMA_45282-MA_0000658
def: "A zone of skin that is part of a hip [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "hip region zone of skin" EXACT [OBOL:automatic]
synonym: "hip skin" EXACT []
synonym: "hip zone of skin" EXACT [OBOL:automatic]
synonym: "regio coxae zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of hip" EXACT [OBOL:automatic]
synonym: "zone of skin of hip region" EXACT [OBOL:automatic]
synonym: "zone of skin of regio coxae" EXACT [OBOL:automatic]
xref: EMAPA:18148
xref: FMA:45282
xref: MA:0000658
is_a: UBERON:0001419 ! skin of limb
is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin
relationship: part_of UBERON:0001464
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001464 ! hip
relationship: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0001555
name: digestive tract
alt_id: UBERON:FMA_45615-MA_0000917-ZFA_0000112
def: "Tube extending from the mouth to the anus." [http://en.wikipedia.org/wiki/Talk\:Human_astrointestinal_tract, http://sourceforge.net/tracker/?func=detail&atid=440764&aid=2991587&group_id=36855]
comment: GO says gut is region of DT, from intestines to anus. ZFA treats as synonym for alimentary canal, and treats it as the sum of DT + organs (ZF has no term from stomach). GO says intestines to anus (excludes stomach and esophagus). MA appears to agree with GO (stomach and esophagus are not parts). FMA includes stomach and esophagus as parts of gut -- the FMA divides gut into lower and upper GI tract; it's not clear if this is exhaustive (small intestine is in neither), but lower GI tract may correspond better to the GO definition. NOTE: GO now changed, see sf id in def xref
subset: uberon_slim
synonym: "alimentary canal" EXACT []
synonym: "gut" BROAD []
synonym: "gut tube" RELATED []
xref: BILA:0000083
xref: BTO:0000545
xref: EHDAA:518
xref: EHDAA2:0000726
xref: FBbt:00003125
xref: FMA:45615
xref: HOG:0000309
xref: OpenCyc:Mx4rvVi0GpwpEbGdrcN5Y29ycA
xref: TAO:0000112
xref: ZFA:0000112
is_a: UBERON:0000481 ! multi-tissue structure
relationship: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0001556
name: lower urinary tract
alt_id: UBERON:FMA_45659-MA_0002636
def: "Subdivision of urinary system which consists of the urinary bladder and the urethra." []
comment: TODO - add superclass urinary tract?
subset: uberon_slim
xref: FMA:45659
xref: galen:LowerUrinaryTract
xref: MA:0002636
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0001557
name: upper respiratory tract
alt_id: UBERON:FMA_45661-MA_0000442
def: "Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx" [Wikipedia:Upper_respiratory_tract]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0002136
xref: FMA:45661
xref: HOG:0000406
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg
xref: MA:0000442
xref: OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ
is_a: UBERON:0000072 ! segment of respiratory tract
[Term]
id: UBERON:0001558
name: lower respiratory tract
alt_id: UBERON:FMA_45662-MA_0000435
def: "Subdivision of respiratory system which consists of the tracheobronchial tree, right lung and left lung." [Wikipedia:Lower_respiratory_tract]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0001036
xref: FMA:45662
xref: HOG:0000382
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg
xref: MA:0000435
xref: OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g
is_a: UBERON:0000072 ! segment of respiratory tract
[Term]
id: UBERON:0001559
name: head of organ
alt_id: UBERON:FMA_45729-MA_0000581
comment: This class was created automatically from a combination of ontologies
synonym: "organ head" EXACT []
xref: FMA:45729
xref: MA:0000581
is_a: UBERON:0000481 ! multi-tissue structure
[Term]
id: UBERON:0001560
name: neck of organ
alt_id: UBERON:FMA_45733-MA_0000589
comment: This class was created automatically from a combination of ontologies
synonym: "organ neck" EXACT []
xref: FMA:45733
xref: MA:0000589
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0001561
name: subcostal artery
alt_id: UBERON:FMA_4613-MA_0002048
def: "The subcostal arteries, so named because they lie below the last ribs, constitute the lowest pair of branches derived from the thoracic aorta, and are in series with the intercostal arteries. Each passes along the lower border of the twelfth rib behind the kidney and in front of the Quadratus lumborum muscle, and is accompanied by the twelfth thoracic nerve. It then pierces the posterior aponeurosis of the Transversus abdominis, and, passing forward between this muscle and the Obliquus internus, anastomoses with the superior epigastric, lower intercostal, and lumbar arteries. Each subcostal artery gives off a posterior branch which has a similar distribution to the posterior ramus of an intercostal artery. [WP,unvetted]." [Wikipedia:Subcostal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:4613
xref: MA:0002048
xref: ncithesaurus:Subcostal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001562
name: digastric
alt_id: UBERON:FMA_46291-MA_0002288
def: "The digastric muscle (also digastricus) (named digastric as it has two bellies) is a small muscle located under the jaw. It lies below the body of the mandible, and extends, in a curved form, from the mastoid process to the symphysis menti. It belongs to the suprahyoid muscles group. A broad aponeurotic layer is given off from the tendon of the digastricus on either side, to be attached to the body and greater cornu of the hyoid bone; this is termed the suprahyoid aponeurosis. [WP,unvetted]." [Wikipedia:Digastric]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:46291
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Digastricus.png/200px-Digastricus.png
xref: MA:0002288
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001563
name: longus capitis
alt_id: UBERON:FMA_46308-MA_0002340
def: "The longus capitis (rectus capitis anticus major), broad and thick above, narrow below, arises by four tendinous slips, from the anterior tubercles of the transverse processes of the third, fourth, fifth, and sixth cervical vertebrae, and ascends, converging toward its fellow of the opposite side, to be inserted into the inferior surface of the basilar part of the occipital bone. It is innervated by a branch of cervical plexus. [WP,unvetted]." [Wikipedia:Longus_capitis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:46308
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Longus_capitis.png/200px-Longus_capitis.png
xref: MA:0002340
xref: ncithesaurus:Longus_Capitis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001564
name: mylohyoid
alt_id: UBERON:FMA_46320-MA_0002344
def: "." [Wikipedia:Mylohyoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:46320
xref: MA:0002344
xref: ncithesaurus:Mylohyoid
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001565
name: geniohyoid
alt_id: UBERON:FMA_46325-MA_0002308
def: "The Geniohyoid muscle is a narrow muscle situated superior to the medial border of the mylohyoid muscle. [WP,unvetted]." [Wikipedia:Geniohyoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:46325
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2c/Geniohyoid_muscle.PNG/200px-Geniohyoid_muscle.PNG
xref: MA:0002308
xref: ncithesaurus:Geniohyoid
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001566
name: cricothyroid muscle
alt_id: UBERON:FMA_46417-MA_0002284
def: "The cricothyroid muscle attaches to the anterolateral aspect of the cricoid and the inferior cornu and lower lamina of the thyroid cartilage, tilting the thyroid forwards and tensing the vocal cords. It is the only laryngeal muscle supplied by the external branch of the superior laryngeal nerve (rather than the recurrent laryngeal nerve). [WP,unvetted]." [Wikipedia:Cricothyroid_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cricothyroid" EXACT []
xref: FMA:46417
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Musculuscricothyreoideus.png/200px-Musculuscricothyreoideus.png
xref: MA:0002284
xref: ncithesaurus:Cricothyroid_Muscle
is_a: UBERON:0001568 ! muscle of larynx
[Term]
id: UBERON:0001567
name: cheek
alt_id: UBERON:FMA_46476-MA_0002475
def: "Cheeks constitute the area of the face below the eyes and between the nose and the left or right ear. It is fleshy in humans and other mammals, the skin being suspended by the chin and the jaws, and forming the lateral wall of the human mouth, visibly touching the cheekbone below the eye. In vertebrates, markings on the cheek area (malar stripes/spots/... ), particularly immediately beneath the eye, often serve as important distinguishing features between species or individuals. 'Buccal' means relating to the cheek. In humans, the region is innervated by the buccal nerve. The inside of the cheek (forming part of the mouth cavity) is lined with a mucous membrane. It is the most common location from which a DNA sample can be taken (during a cheek swab). The cheeks are covered externally by hairy skin, and internally by stratified squamous epithelium. This is mostly smooth, but may have aborally directed papillae . The mucosa is supplied with secretions from the Buccal glands, which are arranged in superior and inferior groups. In carnivores, the superior buccal gland is large and discrete: the Zygomatic gland. During mastication (chewing), the cheeks and tongue between them serve to keep the food between the teeth. [WP,unvetted]." [Wikipedia:Cheek]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001754
xref: FMA:46476
xref: GAID:65
xref: galen:Cheek
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Chica_cachetona.jpg/200px-Chica_cachetona.jpg
xref: MA:0002475
xref: ncithesaurus:Cheek
xref: OpenCyc:Mx4rvVi5WZwpEbGdrcN5Y29ycA
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0001568
name: muscle of larynx
alt_id: UBERON:FMA_46562-MA_0001768
def: "the muscles associated with the larynx." [MP:0002263]
comment: This class was created automatically from a combination of ontologies
synonym: "laryngeal muscle" EXACT []
synonym: "larynx muscle" EXACT []
synonym: "larynx muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of larynx" EXACT [OBOL:automatic]
xref: BTO:0001626
xref: FMA:46562
xref: GAID:144
xref: MA:0001768
xref: ncithesaurus:Laryngeal_Muscle
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002377 ! muscle of neck
is_a: UBERON:0003831 ! implied link automatically realized ! respiratory system muscle
relationship: part_of UBERON:0001737
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0001569
name: constrictor muscle of pharynx
alt_id: UBERON:FMA_46620-MA_0002278
def: "The superior pharyngeal constrictor muscle is a quadrilateral muscle, thinner and paler than the inferior pharyngeal constrictor muscle and middle pharyngeal constrictor muscle. [WP,unvetted]." [Wikipedia:Constrictor_muscle_of_pharynx]
comment: TODO - evaluate taxonomic specificity - functional definition?
subset: uberon_slim
synonym: "pharyngeal constrictor muscle" EXACT []
xref: FMA:46620
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Musculusconstrictorpharyngissuperior.png/200px-Musculusconstrictorpharyngissuperior.png
xref: MA:0002278
is_a: UBERON:0000933 ! pharyngeal muscle
[Term]
id: UBERON:0001570
name: inferior pharyngeal constrictor
alt_id: UBERON:FMA_46623-MA_0002279
def: "The Inferior pharyngeal constrictor, the thickest of the three constrictors, arises from the sides of the cricoid and thyroid cartilage. Similarly to the superior and middle pharyngeal constrictor muscles, it is innervated by the vagus nerve (cranial nerve X), specifically, by branches from the pharyngeal plexus and by neuronal branches from the recurrent laryngeal nerve. [WP,unvetted]." [Wikipedia:Inferior_pharyngeal_constrictor]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "constrictor muscle of pharynx inferior" EXACT []
synonym: "inferior constrictor" EXACT []
synonym: "inferior constrictor of pharynx" EXACT []
synonym: "inferior constrictor pharyngeus" EXACT []
xref: FMA:46623
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Musculusconstrictorpharyngisinferior.png/200px-Musculusconstrictorpharyngisinferior.png
xref: MA:0002279
is_a: UBERON:0001569 ! constrictor muscle of pharynx
[Term]
id: UBERON:0001571
name: genioglossus
alt_id: UBERON:FMA_46690-MA_0002307
def: "The genioglossus is a muscle of the human body which runs from the chin to the tongue. [WP,unvetted]." [Wikipedia:Genioglossus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:9150
xref: EHDAA2:0000704
xref: FMA:46690
xref: HOG:0000847
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Genioglossus.png/200px-Genioglossus.png
xref: MA:0002307
xref: ncithesaurus:Genioglossus
is_a: UBERON:0001575 ! extrinsic muscle of tongue
is_a: UBERON:0003212 ! implied link automatically realized ! gustatory organ
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0001572
name: hyoglossus
alt_id: UBERON:FMA_46691-MA_0002317
def: "The Hyoglossus, thin and quadrilateral, arises from the side of the body and from the whole length of the greater cornu of the hyoid bone, and passes almost vertically upward to enter the side of the tongue, between the Styloglossus and Longitudinalis inferior. The hyoglossus depresses and retracts the tongue makes the dorsum more convex The fibers arising from the body of the hyoid bone overlap those from the greater cornu. It is important in singing. Structures passing medially to the hyoglossus muscle are the lingual vein and lingual artery. Laterally, in between the hyoglossus muscle and the mylohyoid muscle lay several important structures (from superior in inferior): submandibular gland, submandibular duct, lingual nerve, vena comitans of hypoglossal nerve, and the hypoglossal nerve. Note, posteriorly, the lingual nerve is superior to the submandibular duct and a portion of the submandibular salivary gland protrudes into the space between the hyoglossus and mylohyoid muscles. [WP,unvetted]." [Wikipedia:Hyoglossus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:46691
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Hyoglossus.png/200px-Hyoglossus.png
xref: MA:0002317
is_a: UBERON:0001575 ! extrinsic muscle of tongue
is_a: UBERON:0003212 ! implied link automatically realized ! gustatory organ
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0001573
name: styloglossus
alt_id: UBERON:FMA_46692-MA_0002387
def: "The Styloglossus, the shortest and smallest of the three styloid muscles, arises from the anterior and lateral surfaces of the styloid process, near its apex, and from the stylomandibular ligament. Passing downward and forward between the internal and external carotid arteries, it divides upon the side of the tongue near its dorsal surface, blending with the fibers of the Longitudinalis inferior in front of the Hyoglossus; the other, oblique, overlaps the Hyoglossus and decussates with its fibers. [WP,unvetted]." [Wikipedia:Styloglossus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:46692
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Styloglossus.png/200px-Styloglossus.png
xref: MA:0002387
xref: ncithesaurus:Styloglossus
is_a: UBERON:0001575 ! extrinsic muscle of tongue
is_a: UBERON:0003212 ! implied link automatically realized ! gustatory organ
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0001574
name: palatoglossus
alt_id: UBERON:FMA_46697-MA_0002351
def: "The palatoglossus, glossopalatinus, or palatoglossal muscle is a small fleshy fasciculus, narrower in the middle than at either end, forming, with the mucous membrane covering its surface, the glossopalatine arch. It arises from the anterior surface of the soft palate, where it is continuous with the muscle of the opposite side, and passing downward, forward, and lateralward in front of the palatine tonsil, is inserted into the side of the tongue, some of its fibers spreading over the dorsum, and others passing deeply into the substance of the organ to intermingle with the Transversus linguæ. [WP,unvetted]." [Wikipedia:Palatoglossus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:46697
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray1028.png/200px-Gray1028.png
xref: MA:0002351
is_a: UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0001575
name: extrinsic muscle of tongue
alt_id: UBERON:FMA_46699-MA_0002296
comment: This class was created automatically from a combination of ontologies
synonym: "extrinsic tongue muscle" EXACT []
xref: EHDAA2:0002063
xref: FMA:46699
xref: HOG:0000825
xref: MA:0002296
is_a: UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0001576
name: intrinsic muscle of tongue
alt_id: UBERON:FMA_46701-MA_0002327
comment: This class was created automatically from a combination of ontologies
synonym: "intrinsic lingual muscle" EXACT []
synonym: "intrinsic tongue muscle" EXACT []
xref: EHDAA2:0002064
xref: FMA:46701
xref: HOG:0000748
xref: MA:0002327
is_a: UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0001577
name: muscle of face
alt_id: UBERON:FMA_46751-XAO_0001013
def: "The facial muscles are a group of striated muscles innervated by the facial nerve that, among other things, control facial expression. These muscles are also called mimetic muscles. [WP,unvetted]." [Wikipedia:Facial_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "face muscle" EXACT []
synonym: "face muscle organ" EXACT [OBOL:automatic]
synonym: "facial muscle" EXACT []
synonym: "muscle organ of face" EXACT [OBOL:automatic]
xref: FMA:46751
xref: GAID:143
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray378.png/200px-Gray378.png
xref: ncithesaurus:Facial_Muscle
xref: XAO:0001013
is_a: UBERON:0002376 ! muscle of head
relationship: part_of UBERON:0001456
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0001578
name: orbicularis oculi
alt_id: UBERON:FMA_46779-MA_0001254
def: "The 'orbicularis oculi' is a muscle in the face that closes the eyelids. It arises from the nasal part of the frontal bone, from the frontal process of the maxilla in front of the lacrimal groove, and from the anterior surface and borders of a short fibrous band, the medial palpebral ligament. From this origin, the fibers are directed lateralward, forming a broad and thin layer, which occupies the eyelids or palpebræ, surrounds the circumference of the orbit, and spreads over the temple, and downward on the cheek. The palpebral portion of the muscle is thin and pale; it arises from the bifurcation of the medial palpebral ligament, forms a series of concentric curves, and is inserted into the lateral palpebral raphé. The orbital portion is thicker and of a reddish color; its fibers form a complete ellipse without interruption at the lateral palpebral commissure; the upper fibers of this portion blend with the Frontalis and Corrugator. The lacrimal part (Tensor tarsi) is a small, thin muscle, about 6 mm. in breadth and 12 mm. in length, situated behind the medial palpebral ligament and lacrimal sac. It arises from the posterior crest and adjacent part of the orbital surface of the lacrimal bone, and passing behind the lacrimal sac, divides into two slips, upper and lower, which are inserted into the superior and inferior tarsi medial to the puncta lacrimalia; occasionally it is very indistinct. [WP,unvetted]." [Wikipedia:Orbicularis_oculi]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:46779
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Gray379.png/200px-Gray379.png
xref: MA:0001254
xref: ncithesaurus:Orbicularis_Oculi
is_a: UBERON:0001577 ! muscle of face
relationship: part_of UBERON:0001601 ! extra-ocular muscle
[Term]
id: UBERON:0001579
name: olfactory nerve
alt_id: UBERON:FMA_46787-MA_0001096-XAO_0000426-ZFA_0000249
def: "Segment of neural tree organ which is continuous with the olfactory epithelium and an olfactory bulb. // Cranial nerve that supplies the nasal organ." [ISBN:0471209627, Wikipedia:Olfactory_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CN-I" RELATED []
synonym: "cranial nerve I" RELATED []
synonym: "first cranial nerve" EXACT []
synonym: "olfactory I" EXACT [EHDAA2:0001293]
synonym: "olfactory i nerve" EXACT []
synonym: "Olfactory nerve [I]" EXACT []
xref: BTO:0003648
xref: EHDAA2:0001293
xref: FMA:46787
xref: GAID:830
xref: HOG:0000703
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/be/Gray771.png/200px-Gray771.png
xref: MA:0001096
xref: ncithesaurus:Olfactory_Nerve
xref: NIF_GrossAnatomy:birnlex_1319
xref: OpenCyc:Mx4rvZuXAJwpEbGdrcN5Y29ycA
xref: TAO:0000249
xref: XAO:0000426
xref: ZFA:0000249
is_a: UBERON:0001785 ! cranial nerve
relationship: develops_from UBERON:0003050 ! olfactory placode
[Term]
id: UBERON:0001580
name: levator labii superioris
alt_id: UBERON:FMA_46805-MA_0002333
def: "The levator labii superioris (or quadratus labii superioris) is a broad sheet, the origin of which extends from the side of the nose to the zygomatic bone. Its medial fibers form the angular head, which arises by a pointed extremity from the upper part of the frontal process of the maxilla and passing obliquely downward and lateralward divides into two slips. One of these is inserted into the greater alar cartilage and skin of the nose; the other is prolonged into the lateral part of the upper lip, blending with the infraorbital head and with the Orbicularis oris. The intermediate portion or infraorbital head arises from the lower margin of the orbit immediately above the infraorbital foramen, some of its fibers being attached to the maxilla, others to the zygomatic bone. Its fibers converge, to be inserted into the muscular substance of the upper lip between the angular head and the Caninus. The lateral fibers, forming the zygomatic head, arise from the malar surface of the zygomatic bone immediately behind the zygomaticomaxillary suture and pass downward and medialward to the upper lip. [WP,unvetted]." [Wikipedia:Levator_labii_superioris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:46805
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8f/Levator_labii_superioris.png/200px-Levator_labii_superioris.png
xref: MA:0002333
xref: ncithesaurus:Levator_Labii_Superioris
is_a: UBERON:0001577 ! muscle of face
[Term]
id: UBERON:0001581
name: depressor labii inferioris
alt_id: UBERON:FMA_46816-MA_0002287
def: "The depressor labii inferioris (or quadratus labii inferioris) is a facial muscle that helps lower the bottom lip. [WP,unvetted]." [Wikipedia:Depressor_labii_inferioris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:46816
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Depressor_labii_inferioris.png/200px-Depressor_labii_inferioris.png
xref: MA:0002287
xref: ncithesaurus:Depressor_Labii_Inferioris
is_a: UBERON:0001577 ! muscle of face
[Term]
id: UBERON:0001582
name: buccinator
alt_id: UBERON:FMA_46834-MA_0002272
def: "." [Wikipedia:Buccinator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:46834
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Buccinator.jpg/200px-Buccinator.jpg
xref: MA:0002272
xref: ncithesaurus:Buccinator
is_a: UBERON:0001577 ! muscle of face
[Term]
id: UBERON:0001583
name: extrinsic auricular muscle
alt_id: UBERON:FMA_46854-MA_0001230
comment: This class was created automatically from a combination of ontologies
xref: FMA:46854
xref: MA:0001230
is_a: UBERON:0001595 ! auricular muscle
relationship: part_of UBERON:0001595 ! auricular muscle
[Term]
id: UBERON:0001584
name: left subclavian artery
alt_id: UBERON:FMA_4694-MA_0002046
def: "In human anatomy, the subclavian artery is a major artery of the upper thorax that mainly supplies blood to the head and arms. It is located below the clavicle, hence the name. There is a left subclavian and a right subclavian. On the left side of the body, the subclavian comes directly off the arch of aorta. On the right side of the body, the subclavian arises from the relatively short brachiocephalic artery (trunk) when it bifurcates into the subclavian and the right common carotid artery. The usual branches of the subclavian on both sides of the body are the vertebral artery, the internal thoracic artery, the thyrocervical trunk, the costocervical trunk and the dorsal scapular artery. The subclavian becomes the axillary artery at the lateral border of the first rib. [WP,unvetted]." [Wikipedia:Left_subclavian_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:4694
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e6/Gray506.svg/200px-Gray506.svg.png
xref: MA:0002046
xref: ncithesaurus:Left_Subclavian_Artery
xref: OpenCyc:Mx4rtW7hw6gEEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvp8u1JwpEbGdrcN5Y29ycA
is_a: UBERON:0001533 ! subclavian artery
[Term]
id: UBERON:0001585
name: superior vena cava
alt_id: UBERON:FMA_4720-MA_0000481
def: "Trunk of systemic vein which is formed by the union of the right and left brachiocephalic veins and terminates in the right atrium." [Wikipedia:Superior_vena_cava]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior vena cava" EXACT []
xref: BTO:0002683
xref: EHDAA:8726
xref: EHDAA2:0001962
xref: FMA:4720
xref: GAID:549
xref: galen:SuperiorVenaCava
xref: HOG:0001195
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Venenwinkel.png/200px-Venenwinkel.png
xref: MA:0000481
xref: ncithesaurus:Superior_Vena_Cava
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001586
name: internal jugular vein
alt_id: UBERON:FMA_4724-MA_0002157
def: "The two internal jugular veins collect the blood from the brain, the superficial parts of the face, and the neck. [WP,unvetted]." [Wikipedia:Internal_jugular_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "internal jugular" EXACT [EHDAA2:0000877]
synonym: "internal jugular venous tree" EXACT []
xref: EHDAA:5407
xref: EHDAA2:0000877
xref: EHDAA2:0000878
xref: FMA:4724
xref: galen:InternalJugularVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray562.png/200px-Gray562.png
xref: MA:0002157
xref: ncithesaurus:Internal_Jugular_Vein
xref: OpenCyc:Mx4rvqdb95wpEbGdrcN5Y29ycA
xref: XAO:0000382
is_a: UBERON:0004711 ! jugular vein
[Term]
id: UBERON:0001587
name: subclavian vein
alt_id: UBERON:FMA_4725-MA_0002221
def: "In human anatomy, the subclavian veins are two large veins, one on either side of the body. Its diameter is approximately that of the small finger. It is divided into right and left subclavian vein. [WP,unvetted]." [Wikipedia:Subclavian_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "subclavian venous tree" EXACT []
xref: EHDAA:4455
xref: EHDAA2:0001934
xref: FMA:4725
xref: GAID:546
xref: galen:SubclavianVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9e/Gray1174.png/200px-Gray1174.png
xref: MA:0002221
xref: ncithesaurus:Subclavian_Vein
xref: OpenCyc:Mx4rvvvtMZwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001588
name: vertebral vein
alt_id: UBERON:FMA_4727-MA_0002262
def: "The vertebral vein is formed in the suboccipital triangle, from numerous small tributaries which spring from the internal vertebral venous plexuses and issue from the vertebral canal above the posterior arch of the atlas. They unite with small veins from the deep muscles at the upper part of the back of the neck, and form a vessel which enters the foramen in the transverse process of the atlas, and descends, forming a dense plexus around the vertebral artery, in the canal formed by the foramina transversaria of the cervical vertebrae. This plexus ends in a single trunk, which emerges from the foramen transversarium of the sixth cervical vertebra, and opens at the root of the neck into the back part of the innominate vein near its origin, its mouth being guarded by a pair of valves. On the right side, it crosses the first part of the subclavian artery. [WP,unvetted]." [Wikipedia:Vertebral_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:4727
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c9/Gray563.png/200px-Gray563.png
xref: MA:0002262
xref: ncithesaurus:Vertebral_Vein
xref: OpenCyc:Mx4rwKt8xJwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001589
name: internal thoracic vein
alt_id: UBERON:FMA_4729-MA_0002237
def: "In human anatomy, the internal thoracic vein (previously known as the internal mammary vein) is a vessel that drains the chest wall and mamma, a term used for breast in anatomy. Bilaterally, it arises from the superior epigastric vein, accompanies the internal thoracic artery along its course and terminates in the brachiocephalic vein. [WP,unvetted]." [Wikipedia:Internal_thoracic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:4729
xref: MA:0002237
xref: ncithesaurus:Internal_Thoracic_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001590
name: pericardiacophrenic vein
alt_id: UBERON:FMA_4742-MA_0002187
def: "Vena comitans of the pericardiacophrenic arteries." [Wikipedia:Pericardiacophrenic_veins]
comment: This class was created automatically from a combination of ontologies
xref: FMA:4742
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Gray530.png/200px-Gray530.png
xref: MA:0002187
xref: ncithesaurus:Pericardiacophrenic_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001591
name: thymic vein
alt_id: UBERON:FMA_4747-MA_0002246
comment: This class was created automatically from a combination of ontologies
synonym: "thymic tributary of brachiocephalic vein" EXACT []
xref: FMA:4747
xref: MA:0002246
xref: ncithesaurus:Thymic_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001592
name: bronchial vein
alt_id: UBERON:FMA_4749-MA_0002088
def: "The bronchial veins are small vessels that return blood from the larger bronchi and structures at the roots of the lungs. The right side drains into the azygos vein, while the left side drains into the left superior intercostal vein or the accessory hemiazygos vein. The bronchial veins are counterparts to the bronchial arteries. The veins, however, do not return all of the blood supplied by the arteries; much of the blood that is carried in the bronchial arteries is returned to the heart via the pulmonary veins. [WP,unvetted]." [Wikipedia:Bronchial_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bronchial venous tree" EXACT []
xref: FMA:4749
xref: MA:0002088
xref: ncithesaurus:Bronchial_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001593
name: venous plexus
alt_id: UBERON:FMA_4767-MA_0000069
def: "a congregation of multiple veins." [Wikipedia:Venous_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "venous network" EXACT []
xref: FMA:4767
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png
xref: MA:0000069
is_a: UBERON:0005629 ! vascular plexus
relationship: has_part UBERON:0001638 ! vein
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0001594
name: azygos vein
alt_id: UBERON:FMA_4838-MA_0002085
def: "The azygos vein is a vein running up the right side of the thoracic vertebral column. It can also provide an alternate path for blood to the superior vena cava. [WP,unvetted]." [Wikipedia:Azygos_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "azygos venous tree" EXACT []
xref: FMA:4838
xref: GAID:528
xref: galen:AzygosVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Azygos_vein.png/200px-Azygos_vein.png
xref: MA:0002085
xref: ncithesaurus:Azygos_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001595
name: auricular muscle
alt_id: UBERON:FMA_48966-MA_0001229
def: "The Auriculares muscles are the three muscles surrounding the auricula or outer ear: anterior auricular muscle superior auricular muscle posterior auricular muscle [WP,unvetted]." [Wikipedia:Auriculares_muscles]
comment: This class was created automatically from a combination of ontologies
synonym: "muscle of auricle" EXACT []
xref: FMA:48966
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray906.png/200px-Gray906.png
xref: MA:0001229
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0002376 ! implied link automatically realized ! muscle of head
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0001596
name: intrinsic auricular muscle
alt_id: UBERON:FMA_48967-MA_0001231
comment: This class was created automatically from a combination of ontologies
xref: FMA:48967
xref: MA:0001231
is_a: UBERON:0001595 ! auricular muscle
relationship: part_of UBERON:0001595 ! auricular muscle
[Term]
id: UBERON:0001597
name: masseter
alt_id: UBERON:FMA_48996-MA_0002343
def: "In human anatomy, the masseter is one of the muscles of mastication. In the animal kingdom, it is particularly powerful in herbivores to facilitate chewing of plant matter. [WP,unvetted]." [Wikipedia:Masseter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001755
xref: EHDAA:10561
xref: EHDAA2:0001067
xref: FMA:48996
xref: HOG:0000823
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/78/Illu_head_neck_muscle.jpg/200px-Illu_head_neck_muscle.jpg
xref: MA:0002343
is_a: UBERON:0001577 ! implied link automatically realized ! muscle of face
is_a: UBERON:0002376 ! muscle of head
relationship: part_of UBERON:0001567 ! cheek
[Term]
id: UBERON:0001598
name: temporalis
alt_id: UBERON:FMA_49006-MA_0002390
def: "The temporal muscle is one of the muscles of mastication. [WP,unvetted]." [Wikipedia:Temporalis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "temporal muscle" EXACT []
xref: EHDAA:10565
xref: EHDAA2:0002001
xref: FMA:49006
xref: GAID:148
xref: HOG:0000929
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d3/Gray382.png/200px-Gray382.png
xref: MA:0002390
xref: ncithesaurus:Temporal_Muscle
is_a: UBERON:0002376 ! muscle of head
relationship: part_of UBERON:0001444 ! subdivision of head
[Term]
id: UBERON:0001599
name: stapedius
alt_id: UBERON:FMA_49027-MA_0001220
def: "The stapedius is the smallest skeletal muscle in the human body. At just over one millimeter in length, its purpose is to stabilize the smallest bone in the body, the stapes. The stapedius emerges from a pinpoint foramen in the apex of the pyramidal eminence (a hollow, cone-shaped prominence in the posterior wall of the tympanic cavity), and inserts into the neck of the stapes. [WP,unvetted]." [Wikipedia:Stapedius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:49027
xref: GAID:164
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Musculusstapedius.png/200px-Musculusstapedius.png
xref: MA:0001220
is_a: UBERON:0002376 ! muscle of head
relationship: part_of UBERON:0001756 ! middle ear
[Term]
id: UBERON:0001600
name: tensor tympani
alt_id: UBERON:FMA_49028-MA_0001221
def: "the larger of the two muscles of the tympanic cavity, is contained in the bony canal above the osseous portion of the auditory tube. Its role is to dampen sounds produced from chewing. It arises from the cartilaginous portion of the auditory tube and the adjoining part of the great wing of the sphenoid, as well as from the osseous canal in which it is contained. Passing backward through the canal, it ends in a slender tendon which enters the tympanic cavity, makes a sharp bend around the extremity of the septum, known as the processus cochleariformis[1], and is inserted into the manubrium of the malleus, near its root[WP]." [Wikipedia:Tensor_tympani]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "eustachian muscle" EXACT []
xref: FMA:49028
xref: GAID:166
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Gray912.png/200px-Gray912.png
xref: MA:0001221
xref: ncithesaurus:Tensor_Tympani
is_a: UBERON:0002376 ! muscle of head
is_a: UBERON:0004112 ! implied link automatically realized ! muscle of middle ear
is_a: UBERON:0005238 ! implied link automatically realized ! tensor tympani muscle
relationship: part_of UBERON:0004114 ! tympanic cavity
[Term]
id: UBERON:0001601
name: extra-ocular muscle
alt_id: UBERON:FMA_49033-MA_0000271
def: "Skeletal muscle derived from cranial mesoderm and controls eye movements." [GO:0002074, Wikipedia:Extra-ocular_muscle, Wikipedia:Muscles_of_the_orbit]
comment: How many of these? TODO - MA and FMA vary here, and WP self-contradicts. TODO - develops from cranial mesoderm
subset: uberon_slim
synonym: "extra-ocular skeletal muscle" EXACT []
synonym: "extraocular muscle" EXACT []
synonym: "extrinsic muscle of eyeball" EXACT []
xref: BTO:0001579
xref: EFO:0001921
xref: FMA:49033
xref: HOG:0000549
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/MRI_of_human_eye.jpg/200px-MRI_of_human_eye.jpg
xref: MA:0001271
xref: ZFA:0000511
is_a: UBERON:0001577 ! implied link automatically realized ! muscle of face
is_a: UBERON:0004277 ! eye muscle
relationship: has_part UBERON:0001134 ! skeletal muscle tissue
relationship: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0001602
name: medial rectus
alt_id: UBERON:FMA_49037-ZFA_0000301
def: "The medial rectus muscle is a muscle in the orbit. As with most of the muscles of the orbit, it is innervated by the inferior division of the oculomotor nerve (Cranial Nerve III). This muscle shares an origin with several other extrinsic eye muscles, the anulus tendineus, or common tendon. It is the largest of the extraocular muscles and its only action is adduction of the eyeball. [WP,unvetted]." [Wikipedia:Medial_rectus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:49037
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Eyemuscles.png/200px-Eyemuscles.png
xref: TAO:0000301
xref: ZFA:0000301
is_a: UBERON:0001601 ! extra-ocular muscle
is_a: UBERON:0004836 ! implied link automatically realized ! medial rectus extraocular muscle
relationship: part_of UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0001603
name: lateral rectus
alt_id: UBERON:FMA_49038-ZFA_0000383
def: "For the muscle of the neck, see Rectus capitis lateralis muscle The lateral rectus muscle is a muscle in the orbit. It is one of six extraocular muscles that control the movements of the eye (abduction in this case) and the only muscle innervated by the abducens nerve, cranial nerve VI. [WP,unvetted]." [Wikipedia:Lateral_rectus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:49038
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Eyemuscles.png/200px-Eyemuscles.png
xref: TAO:0000383
xref: ZFA:0000383
is_a: UBERON:0001601 ! extra-ocular muscle
is_a: UBERON:0004837 ! implied link automatically realized ! lateral rectus extraocular muscle
relationship: part_of UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0001604
name: levator palpebrae superioris
alt_id: UBERON:FMA_49041-MA_0001272
def: "The levator palpebrae superioris (or levator muscle of upper eyelid) is the muscle in the orbit that elevates the superior (upper) eyelid. [WP,unvetted]." [Wikipedia:Levator_palpebrae_superioris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:49041
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Eyemuscles.png/200px-Eyemuscles.png
xref: MA:0001272
xref: ncithesaurus:Levator_Palpebrae_Superioris
is_a: UBERON:0001601 ! extra-ocular muscle
is_a: UBERON:0003660 ! implied link automatically realized ! eyelid muscle
relationship: part_of UBERON:0001601 ! extra-ocular muscle
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0001605
name: ciliary muscle
alt_id: UBERON:FMA_49151-MA_0001269
def: "The ciliary muscle is a smooth muscle in the eye that controls the eye's accommodation for viewing objects at varying distances and regulates the flow of aqueous humour through Schlemm's canal. [WP,unvetted]." [Wikipedia:Ciliary_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000654
xref: FMA:49151
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray872.png/200px-Gray872.png
xref: MA:0001269
xref: ncithesaurus:Ciliary_Muscle
is_a: UBERON:0001601 ! extra-ocular muscle
relationship: part_of UBERON:0001775 ! ciliary body
[Term]
id: UBERON:0001606
name: muscle of iris
alt_id: UBERON:FMA_49154-MA_0001287
def: "." [Wikipedia:Iris_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "iris muscle" EXACT []
synonym: "iris muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of iris" EXACT [OBOL:automatic]
xref: FMA:49154
xref: MA:0001287
is_a: UBERON:0002376 ! implied link automatically realized ! muscle of head
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004277 ! implied link automatically realized ! eye muscle
relationship: part_of UBERON:0001769
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0001607
name: sphincter pupillae
alt_id: UBERON:FMA_49157-MA_0001289
def: "The iris sphincter muscle (pupillary sphincter, circular muscle of iris, circular fibers) is a muscle in the part of the eye called the iris. It encircles the eye, appropriate to its function as a constrictor. It is found in vertebrates and some cephalopods. In humans, it functions to constrict the pupil in bright light or during accommodation. Its dimensions are about 0.75 mm wide by 0.15 mm thick. It is controlled by parasympathetic fibers that originate from the Edinger-Westphal nucleus, travel along the oculomotor nerve (CN III), synapse in the ciliary ganglion, and then enter the eye via the short ciliary nerves. Initially, all the myocytes are of the smooth muscle type, but much later in life, so that ultimately most cells are of the striated muscle type. [WP,unvetted]." [Wikipedia:Sphincter_pupillae]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:49157
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray878.png/200px-Gray878.png
xref: MA:0001289
is_a: UBERON:0001606 ! implied link automatically realized ! muscle of iris
is_a: UBERON:0004590 ! implied link automatically realized ! sphincter muscle
relationship: part_of UBERON:0001769
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0001608
name: dilatator pupillae
alt_id: UBERON:FMA_49158-MA_0001288
def: "The iris dilator muscle (pupil dilator muscle, pupillary dilator, radial muscle of iris, radiating fibers), is a smooth muscle of the eye, running radially in the iris and therefore fit as a dilator. It is innervated by the sympathetic system, which acts by releasing noradrenaline, which acts on α1-receptors.. Thus, when presented with a threatening stimuli that activates the fight-or-flight response, this innervation dilates the iris, thus temporarily letting more light reach the retina. [WP,unvetted]." [Wikipedia:Dilator_pupillae, Wikipedia:Iris_dilator_muscle]
comment: TODO - check parentage
subset: uberon_slim
synonym: "dilator muscle of pupil" EXACT []
synonym: "dilator of pupil" EXACT []
synonym: "dilator pupillae" EXACT []
synonym: "dilator pupillae muscle" RELATED [BTO:0001371]
synonym: "musculus dilator pupillae" RELATED [BTO:0001371]
xref: BTO:0001371
xref: FMA:49158
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray878.png/200px-Gray878.png
xref: MA:0001288
is_a: UBERON:0004234 ! iris smooth muscle
[Term]
id: UBERON:0001609
name: isthmus of thyroid gland
alt_id: UBERON:FMA_49178-MA_0000727
def: "The thyroid isthmus connects together the lower thirds of the lobes; it measures about 1.25 cm. in breadth, and the same in depth, and usually covers the second and third rings of the trachea. Its situation and size present, however, many variations. In the middle line of the neck it is covered by the skin and fascia, and close to the middle line, on either side, by the Sternothyreoideus. Across its upper border runs an anastomotic branch uniting the two superior thyroid arteries; at its lower border are the inferior thyroid veins. [WP,unvetted]." [Wikipedia:Thyroid_isthmus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "isthmus" BROAD [HOG:0000739]
synonym: "isthmus glandulae thyroideae" EXACT []
synonym: "thyroid gland isthmus" EXACT []
synonym: "thyroid isthmus" EXACT []
xref: EHDAA:5777
xref: EHDAA2:0002031
xref: EMAPA:18195
xref: EMAPA:18829
xref: FMA:49178
xref: HOG:0000739
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9e/Gray1174.png/200px-Gray1174.png
xref: MA:0000727
xref: ncithesaurus:Thyroid_Gland_Isthmus
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0001610
name: lingual artery
alt_id: UBERON:FMA_49526-MA_0001992
def: "The lingual artery arises from the external carotid between the superior thyroid and facial artery[WP]." [Wikipedia:Lingual_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lingual branch of external carotid artery" EXACT []
xref: FMA:49526
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Lingual_artery.PNG/200px-Lingual_artery.PNG
xref: MA:0001992
xref: ncithesaurus:Lingual_Artery
xref: OpenCyc:Mx4rvfqDCZwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001611
name: sublingual artery
alt_id: UBERON:FMA_49543-MA_0002049
def: "The Sublingual Artery arises at the anterior margin of the Hyoglossus, and runs forward between the Genioglossus and Mylohyoideus to the sublingual gland. It supplies the gland and gives branches to the Mylohyoideus and neighboring muscles, and to the mucous membrane of the mouth and gums. One branch runs behind the alveolar process of the mandible in the substance of the gum to anastomose with a similar artery from the other side; another pierces the Mylohyoideus and anastomoses with the submental branch of the external maxillary artery. [WP,unvetted]." [Wikipedia:Sublingual_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sublingual branch of lingual artery" EXACT []
xref: FMA:49543
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7a/Gray559.png/200px-Gray559.png
xref: MA:0002049
xref: ncithesaurus:Sublingual_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001612
name: facial artery
alt_id: UBERON:FMA_49549-MA_0001950
def: "The facial artery (external maxillary artery in older texts) is a branch of the external carotid artery that supplies structures of the face. [WP,unvetted]." [Wikipedia:Facial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "external maxillary artery" EXACT []
xref: FMA:49549
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Gray508.png/200px-Gray508.png
xref: MA:0001950
xref: ncithesaurus:Facial_Artery
xref: OpenCyc:Mx4rwCt95ZwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
relationship: part_of UBERON:0001456
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0001613
name: occipital artery
alt_id: UBERON:FMA_49586-MA_0002009
def: "The occipital artery arises opposite the facial artery, its path is below the posterior belly of digastric to the occipital region. This artery supplies blood to the back of the scalp and sterno-mastoid muscles. Other muscles it supplies are deep muscles in the back and neck. [WP,unvetted]." [Wikipedia:Occipital_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:49586
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Gray508.png/200px-Gray508.png
xref: MA:0002009
xref: ncithesaurus:Occipital_Artery
xref: OpenCyc:Mx4rwC1IFJwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001614
name: superficial temporal artery
alt_id: UBERON:FMA_49650-MA_0002062
def: "In human anatomy, the superficial temporal artery is a major artery of the head. It arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]." [Wikipedia:Superficial_temporal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003747
xref: FMA:49650
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray1200.png/200px-Gray1200.png
xref: MA:0002062
xref: OpenCyc:Mx4rv33WkZwpEbGdrcN5Y29ycA
is_a: UBERON:0001632 ! temporal artery
[Term]
id: UBERON:0001615
name: transverse facial artery
alt_id: UBERON:FMA_49657-MA_0002068
def: "The transverse facial artery is an artery that branches from the superficial temporal artery and runs across the face. [WP,unvetted]." [Wikipedia:Transverse_facial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:49657
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray515.png/200px-Gray515.png
xref: MA:0002068
xref: ncithesaurus:Transverse_Facial_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001616
name: maxillary artery
alt_id: UBERON:FMA_49675-MA_0001919
def: "The maxillary artery (or internal maxillary artery in older texts) is an artery that supplies deep structures of the face. It comes just out behind the neck of the mandible. [WP,unvetted]." [Wikipedia:Maxillary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "internal maxillary artery" EXACT []
xref: EHDAA:7357
xref: EHDAA2:0001069
xref: FMA:49675
xref: GAID:498
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/39/Gray510.png/200px-Gray510.png
xref: MA:0001919
xref: ncithesaurus:Maxillary_Artery
xref: OpenCyc:Mx4rwDDJ45wpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001617
name: mental artery
alt_id: UBERON:FMA_49701-MA_0002002
def: "The inferior alveolar artery (inferior dental artery) is an artery of the face. [WP,unvetted]." [Wikipedia:Mental_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "mental branch of inferior alveolar artery" EXACT []
xref: FMA:49701
xref: MA:0002002
xref: ncithesaurus:Mental_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001618
name: buccal artery
alt_id: UBERON:FMA_49754-MA_0001924
def: "The buccal artery (buccinator artery) is small and runs obliquely forward, between the Pterygoideus internus and the insertion of the Temporalis, to the outer surface of the Buccinator, to which it is distributed, anastomosing with branches of the external maxillary and with the infraorbital. [WP,unvetted]." [Wikipedia:Buccal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:49754
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7b/Gray508.png/200px-Gray508.png
xref: MA:0001924
xref: ncithesaurus:Buccal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001619
name: ophthalmic artery
alt_id: UBERON:FMA_49868-MA_0002011
def: "The ophthalmic artery is a branch of the internal carotid artery which supplies branches to supply the eye and other structures in the orbit. It enters the orbit together with the Optic nerve through the Optic canal. [WP,unvetted]." [Wikipedia:Ophthalmic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:7363
xref: EHDAA2:0001300
xref: FMA:49868
xref: GAID:503
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ce/Gray514.png/200px-Gray514.png
xref: MA:0002011
xref: OpenCyc:Mx4rvcCxpJwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001620
name: central retinal artery
alt_id: UBERON:FMA_49879-MA_0002038
def: "The central retinal artery (retinal artery) branches off the ophthalmic artery, running inferior to the optic nerve within its dural sheath to the eyeball. [WP,unvetted]." [Wikipedia:Central_retinal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "central artery of retina" EXACT []
synonym: "retinal artery" EXACT []
synonym: "Zinn's artery" EXACT []
xref: FMA:49879
xref: GAID:508
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Gray514_updated.png/200px-Gray514_updated.png
xref: MA:0002038
xref: ncithesaurus:Retinal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001621
name: coronary artery
alt_id: UBERON:FMA_49893-MA_0002453
def: "Systemic artery which supplies the heart." [Wikipedia:Coronary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "coronary arterial tree" EXACT []
xref: BTO:0000290
xref: EFO:0002551
xref: FMA:49893
xref: galen:CoronaryArtery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png
xref: MA:0002453
xref: ncithesaurus:Coronary_Artery
xref: OpenCyc:Mx4rvoL56ZwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003498 ! implied link automatically realized ! heart blood vessel
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0001622
name: lacrimal artery
alt_id: UBERON:FMA_49927-MA_0001988
def: "The lacrimal artery arises close to the optic foramen, and is one of the largest branches derived from the ophthalmic artery: not infrequently it is given off before the artery enters the orbit. It accompanies the lacrimal nerve along the upper border of the Lateral Rectus, supplies the lacrimal gland. [WP,unvetted]." [Wikipedia:Lacrimal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:49927
xref: MA:0001988
xref: ncithesaurus:Lacrimal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001623
name: dorsal nasal artery
alt_id: UBERON:FMA_50000-MA_0001945
def: "The dorsal nasal artery (nasal artery) is an artery of the head. It is one of the two terminal branches of the ophthalmic artery. [WP,unvetted]." [Wikipedia:Dorsal_nasal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dorsal nasal branch of ophthalmic artery" EXACT []
synonym: "external nasal artery" EXACT []
xref: FMA:50000
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray515.png/200px-Gray515.png
xref: MA:0001945
xref: ncithesaurus:Dorsal_Nasal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001624
name: anterior cerebral artery
alt_id: UBERON:FMA_50028-MA_0001915
def: "One of a pair of arteries on the brain that supply oxygen to most medial portions of frontal lobes and superior medial parietal lobes. The 2 anterior cerebral arteries arise from the internal carotid artery and are part of the Circle of Willis." [Wikipedia:Anterior_cerebral_artery]
subset: uberon_slim
xref: EHDAA:5296
xref: EHDAA2:0000128
xref: FMA:50028
xref: GAID:485
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png
xref: MA:0001915
xref: ncithesaurus:Anterior_Cerebral_Artery
xref: OpenCyc:Mx4rv8biO5wpEbGdrcN5Y29ycA
is_a: UBERON:0004449 ! cerebral artery
[Term]
id: UBERON:0001625
name: right coronary artery
alt_id: UBERON:FMA_50039-MA_0002455
def: "Coronary artery which emerges from the anterior aortic sinus, between the right auricle and the pulmonary trunk, and supplies the right side of the heart." [Wikipedia:Right_coronary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "right coronary arterial tree" EXACT []
xref: FMA:50039
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png
xref: MA:0002455
xref: ncithesaurus:Right_Coronary_Artery
is_a: UBERON:0001621 ! coronary artery
[Term]
id: UBERON:0001626
name: left coronary artery
alt_id: UBERON:FMA_50040-MA_0002454
def: "Coronary artery which emerges from the left posterior aortic sinus, between the left auricle and the pulmonary trunk, and supplies the left side of the heart." [Wikipedia:Left_coronary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "left coronary arterial tree" EXACT []
xref: FMA:50040
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Gray495.png/200px-Gray495.png
xref: MA:0002454
xref: ncithesaurus:Left_Coronary_Artery
is_a: UBERON:0001621 ! coronary artery
[Term]
id: UBERON:0001627
name: middle cerebral artery
alt_id: UBERON:FMA_50079-MA_0001935
def: "The middle cerebral artery (MCA) is one of the three major paired arteries that supplies blood to the cerebrum. The MCA arises from the internal carotid and continues into the lateral sulcus where it then branches and projects to many parts of the lateral cerebral cortex. It also supplies blood to the anterior temporal lobes and the insular cortices. The left and right MCAs rise from trifurcations of the internal carotid arteries and thus are connected to the anterior cerebral arteries and the posterior communicating arteries, which connect to the posterior cerebral arteries. The MCAs are not considered a part of the Circle of Willis. [WP,unvetted]." [Wikipedia:Middle_cerebral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sylvian artery" EXACT []
xref: EHDAA:5298
xref: EHDAA2:0001179
xref: FMA:50079
xref: GAID:487
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png
xref: MA:0001935
xref: ncithesaurus:Middle_Cerebral_Artery
xref: OpenCyc:Mx4rvh3qQ5wpEbGdrcN5Y29ycA
is_a: UBERON:0004449 ! cerebral artery
[Term]
id: UBERON:0001628
name: posterior communicating artery
alt_id: UBERON:FMA_50084-MA_0002023-ZFA_0005001
def: "An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery. Isogai et al. 2001." [Wikipedia:Posterior_communicating_artery, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "caudal communicating segment" RELATED []
synonym: "PCA" RELATED []
synonym: "PCS" RELATED []
synonym: "posterior communicating segment of the basilar artery" RELATED []
xref: EHDAA:3352
xref: EHDAA2:0001487
xref: FMA:50084
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Circle_of_Willis_en.svg/200px-Circle_of_Willis_en.svg.png
xref: MA:0002023
xref: ncithesaurus:Posterior_Communicating_Artery
xref: OpenCyc:Mx4rwDDlqpwpEbGdrcN5Y29ycA
xref: TAO:0005001
xref: ZFA:0005001
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001629
name: carotid body
alt_id: UBERON:FMA_50095-MA_0002463
def: "The carotid body (carotid glomus or glomus caroticum) is a small cluster of chemoreceptors and supporting cells located near the fork of the carotid artery (which runs along both sides of the throat). The carotid body detects changes in the composition of arterial blood flowing through it, mainly the partial pressure of oxygen, but also of carbon dioxide. Furthermore, it is also sensitive to changes in pH and temperature. [WP,unvetted]." [Wikipedia:Carotid_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000204
xref: FMA:50095
xref: GAID:813
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray1186.png/200px-Gray1186.png
xref: MA:0002463
xref: ncithesaurus:Carotid_Body
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0001630
name: muscle organ
alt_id: UBERON:FMA_5022-MIAA_0000302-XAO_0000174
def: "Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]. Nonparenchymatous organ that primarily consists of skeletal muscle tissue aggregated into macroscopic fasciculi by connective tissue; together with other muscles, it constitutes the muscular system. Examples: biceps, diaphragm, masseter, right third external intercostal muscle, external oblique, levator ani, serratus anterior[FMA]." [GO:0007517]
subset: uberon_slim
xref: BTO:0001103
xref: FMA:5022
xref: GAID:131
xref: HOG:0001245
xref: MA:0000015
xref: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA
xref: TAO:0005145
xref: XAO:0000172
xref: ZFA:0005145
is_a: UBERON:0000062 ! implied link automatically realized ! organ
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0005090 ! muscle structure
relationship: has_part UBERON:0002385
intersection_of: UBERON:0000062 ! organ
intersection_of: has_part UBERON:0002385 ! muscle tissue
relationship: part_of UBERON:0001015 ! musculature
[Term]
id: UBERON:0001631
name: thoracic duct
alt_id: UBERON:FMA_5031-ZFA_0005110
def: "Lymphatic trunk that connects all tributaries of the thoracic duct tree to the trunk of the left brachiocephalic vein. Examples: There is only one thoracic duct tree." [Wikipedia:Thoracic_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "trunk of thoracic duct tree" EXACT []
xref: FMA:5031
xref: GAID:1290
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/75/Gray599.png/200px-Gray599.png
xref: MA:0002801
xref: ncithesaurus:Thoracic_Duct
xref: TAO:0005110
xref: ZFA:0005110
is_a: UBERON:0001473 ! lymphatic vessel
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0002065 ! postcardinal vein
[Term]
id: UBERON:0001632
name: temporal artery
alt_id: UBERON:FMA_50438-MA_0002061
def: "In human anatomy, the superficial temporal artery is a major artery of the head. It arises from the external carotid artery when it bifurcates into the superficial temporal artery and maxillary artery. Its pulse is palpable superior to the zygomatic arch, anterior and superior to the tragus. [WP,unvetted]." [Wikipedia:Temporal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:50438
xref: GAID:489
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray1200.png/200px-Gray1200.png
xref: MA:0002061
xref: ncithesaurus:Temporal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001633
name: basilar artery
alt_id: UBERON:FMA_50542-MA_0001920-ZFA_0005002
def: "In human anatomy, the basilar artery is one of the arteries that supplies the brain with oxygen-rich blood. The two vertebral arteries and the basilar artery are sometimes together called the vertebrobasilar system, which supplies blood to the posterior part of circle of Willis and anastomoses with blood supplied to the anterior part of the circle of Willis from the carotid arteries. [WP,unvetted]." [Wikipedia:Basilar_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "BA" RELATED []
xref: EHDAA:5285
xref: EHDAA2:0000163
xref: FMA:50542
xref: GAID:474
xref: HOG:0000237
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Circle_of_Willis_en.svg/200px-Circle_of_Willis_en.svg.png
xref: MA:0001920
xref: ncithesaurus:Basilar_Artery
xref: OpenCyc:Mx4rwJTtcZwpEbGdrcN5Y29ycA
xref: TAO:0005002
xref: ZFA:0005002
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
relationship: part_of UBERON:0002200 ! vasculature of head
[Term]
id: UBERON:0001634
name: mesencephalic artery
alt_id: UBERON:FMA_50570-ZFA_0001068
def: "Develops from the proximal portion of the primitive mesencephalic artery. Isogai et al.2001." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "MsA" RELATED []
xref: FMA:50570
xref: TAO:0001068
xref: ZFA:0001068
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001635
name: superior cerebellar artery
alt_id: UBERON:FMA_50573-MA_0001934
def: "The superior cerebellar artery (SCA) arises near the termination of the basilar artery. It passes lateralward, immediately below the oculomotor nerve, which separates it from the posterior cerebral artery, winds around the cerebral peduncle, close to the trochlear nerve, and, arriving at the upper surface of the cerebellum, divides into branches which ramify in the pia mater and anastomose with those of the inferior cerebellar arteries. Several branches are given to the pineal body, the anterior medullary velum, and the tela chorioidea of the third ventricle. [WP,unvetted]." [Wikipedia:Superior_cerebellar_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:50573
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/CerebellumArteries.jpg/200px-CerebellumArteries.jpg
xref: MA:0001934
xref: ncithesaurus:Superior_Cerebellar_Artery
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
relationship: part_of UBERON:0001633 ! basilar artery
[Term]
id: UBERON:0001636
name: posterior cerebral artery
alt_id: UBERON:FMA_50583-MA_0002022
def: "The posterior cerebral artery (PCA) is one of a pair of blood vessels that supplies oxygenated blood to the posterior aspect of the brain in human anatomy]. It arises near the intersection of the posterior communicating artery and the basilar artery and connects with the ipsilateral middle cerebral artery (MCA) and internal carotid artery via the posterior communicating artery (PCommA). [WP,unvetted]." [Wikipedia:Posterior_cerebral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:50583
xref: GAID:488
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png
xref: MA:0002022
xref: ncithesaurus:Posterior_Cerebral_Artery
xref: OpenCyc:Mx4rwO4qIJwpEbGdrcN5Y29ycA
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
is_a: UBERON:0004449 ! cerebral artery
relationship: part_of UBERON:0001633 ! basilar artery
[Term]
id: UBERON:0001637
name: artery
alt_id: UBERON:FMA_50720-MA_0000061-MA_0000064-MIAA_0000034-XAO_0000114-ZFA_0000005
def: "A vessel carrying blood away from the heart" [GO:0014824]
comment: in FMA an artery is a tree
subset: uberon_slim
synonym: "arterial subtree" EXACT []
synonym: "arterial system" RELATED []
synonym: "arterial tree organ part" EXACT []
synonym: "arterial vessel" RELATED []
xref: BTO:0000573
xref: EFO:0000814
xref: EHDAA2:0000143
xref: FMA:50720
xref: GAID:468
xref: galen:Artery
xref: HOG:0001251
xref: MA:0000064
xref: MAT:0000034
xref: MIAA:0000034
xref: ncithesaurus:Artery
xref: OpenCyc:Mx4rvVjknZwpEbGdrcN5Y29ycA
xref: TAO:0000005
xref: XAO:0000114
xref: ZFA:0000005
is_a: UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0004572 ! arterial system
[Term]
id: UBERON:0001638
name: vein
alt_id: UBERON:FMA_50723-MA_0000066-MA_0000067-MIAA_0000037-XAO_0000115-ZFA_0000082
def: "Subdivision of venous tree (organ) which consists of branching sets of tubes (venous trunks) that form a tree; together with other venous trees (organ part), it constitutes a venous tree (organ). Examples: subclavian venous tree, jugular tree, extrahepatic portal tree, common iliac venous tree. // Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [NLM:vein, Wikipedia:Vein]
comment: TODO - check with MA - vein vs venous blood vessel
subset: uberon_slim
synonym: "venous subtree" BROAD []
synonym: "venous tree organ part" EXACT []
synonym: "venous vessel" BROAD []
xref: BTO:0000234
xref: EFO:0000816
xref: FMA:50723
xref: GAID:492
xref: galen:Vein
xref: HOG:0001252
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c2/Venous_system_en.svg/200px-Venous_system_en.svg.png
xref: MA:0000067
xref: MAT:0000037
xref: MIAA:0000037
xref: ncithesaurus:Vein
xref: OpenCyc:Mx4rvVjkWpwpEbGdrcN5Y29ycA
xref: TAO:0000082
xref: XAO:0000115
xref: ZFA:0000082
is_a: UBERON:0003920 ! venous blood vessel
[Term]
id: UBERON:0001639
name: hepatic portal vein
alt_id: UBERON:FMA_50735-MA_0002132-ZFA_0005090
def: "The hepatic portal vein (often simply portal vein) is a vein in the abdominal cavity that drains blood from the gastrointestinal tract and spleen. It is usually formed by the confluence of the superior mesenteric and splenic veins, and also receives blood from the inferior mesenteric, gastric, and cystic veins. The hepatic portal vein is a major component of the hepatic portal system, one of the main portal venous systems in the body. Conditions involving the hepatic portal vein cause considerable illness and death. An important example of such a condition is elevated blood pressure in the hepatic portal vein. This condition, called portal hypertension, is a major complication of cirrhosis worldwide. [WP,unvetted]." [Wikipedia:Hepatic_portal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hepatic portal tree" EXACT []
synonym: "HPV" RELATED []
synonym: "liver portal vein" EXACT [OBOL:automatic]
synonym: "portal vein of liver" EXACT [OBOL:automatic]
synonym: "primary hepatic portal veins" RELATED []
xref: FMA:50735
xref: HOG:0000642
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png
xref: MA:0002132
xref: TAO:0005090
xref: ZFA:0005090
is_a: UBERON:0001143 ! implied link automatically realized ! hepatic vein
is_a: UBERON:0002017 ! portal vein
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0001640
name: celiac artery
alt_id: UBERON:FMA_50737-MA_0001931
def: "The celiac artery, also known as the celiac trunk, is the first major branch of the abdominal aorta. Branching from the aorta 'anterior to the upper part of L1' vertebra in humans, it is one of three anterior/ midline branches of the abdominal aorta. [WP,unvetted]." [Wikipedia:Celiac_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "celiac tree" EXACT []
synonym: "coeliac artery" RELATED []
xref: FMA:50737
xref: GAID:483
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray532.png/200px-Gray532.png
xref: MA:0001931
xref: ncithesaurus:Coeliac_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001641
name: transverse sinus
alt_id: UBERON:FMA_50763-MA_0001868
def: "The transverse sinuses (left and right lateral sinuses), within a human head, are two areas beneath the brain, which allow blood veins to span the area, from the back of the head towards the nose. They drain from the straight sinus and superior sagittal sinus (along the top and back of the brain) to the sigmoid sinuses (at the center of the head), at the internal jugular vein. See diagram (at right): labeled under the brain as '' . The transverse sinuses are of large size and begin at the internal occipital protuberance; one, generally the right, being the direct continuation of the superior sagittal sinus, the other of the straight sinus. Each transverse sinus passes lateralward and forward, describing a slight curve with its convexity upward, to the base of the petrous portion of the temporal bone, and lies, in this part of its course, in the attached margin of the tentorium cerebelli; it then leaves the tentorium and curves downward and medialward to reach the jugular foramen, where it ends in the internal jugular vein. In its course it rests upon the squama of the occipital, the mastoid angle of the parietal, the mastoid part of the temporal, and, just before its termination, the jugular process of the occipital; the portion which occupies the groove on the mastoid part of the temporal is sometimes termed the sigmoid sinus. The transverse sinuses are frequently of unequal size, with the one formed by the superior sagittal sinus being the larger; they increase in size as they proceed, from back to center. On transverse section, the horizontal portion exhibits a prismatic form, the curved portion has a semicylindrical form. They receive the blood from the superior petrosal sinuses at the base of the petrous portion of the temporal bone; they communicate with the veins of the pericranium by means of the mastoid and condyloid emissary veins; and they receive some of the inferior cerebral and inferior cerebellar veins, and some veins from the diploë. The petrosquamous sinus, when present, runs backward along the junction of the squama and petrous portion of the temporal, and opens into the transverse sinus. [WP,unvetted]." [Wikipedia:Transverse_sinus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateral sinus" EXACT []
xref: FMA:50763
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray488_blue.gif/200px-Gray488_blue.gif
xref: MA:0001868
xref: OpenCyc:Mx4rwDb62ZwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001642
name: superior sagittal sinus
alt_id: UBERON:FMA_50767-MA_0001867
def: "The superior sagittal sinus (also known as the superior longitudinal sinus), within a human cranium, is an area above/behind the brain, which allows blood veins to span the area, from the top of the head towards the back. It is believed that the cerebrospinal fluid drains through the arachnoid granulations into the dural venous sinuses of the superior sagittal sinus. [WP,unvetted]." [Wikipedia:Superior_sagittal_sinus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:50767
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray488_blue.gif/200px-Gray488_blue.gif
xref: MA:0001867
xref: ncithesaurus:Superior_Sagittal_Sinus
xref: OpenCyc:Mx4rv9naEJwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001643
name: oculomotor nerve
alt_id: UBERON:FMA_50864-MA_0001095-XAO_0003090-ZFA_0000405
def: "Cranial nerve which connects the midbrain to the extra-ocular and intra-ocular muscles. // Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Oculomotor_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CN-III" RELATED []
synonym: "cranial nerve III" RELATED []
synonym: "occulomotor" RELATED []
synonym: "oculomotor III" EXACT [EHDAA2:0001284]
synonym: "oculomotor III nerve" EXACT []
synonym: "Oculomotor nerve [III]" EXACT []
synonym: "oculomotor nerve tree" EXACT []
synonym: "third cranial nerve" EXACT []
xref: EHDAA2:0001284
xref: FMA:50864
xref: GAID:829
xref: HOG:0000692
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Gray776.png/200px-Gray776.png
xref: MA:0001095
xref: ncithesaurus:Oculomotor_Nerve
xref: NIF_GrossAnatomy:birnlex_1646
xref: OpenCyc:Mx4rvj7pZpwpEbGdrcN5Y29ycA
xref: TAO:0000405
xref: XAO:0003090
xref: ZFA:0000405
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0001644
name: trochlear nerve
alt_id: UBERON:FMA_50865-MA_0001105-XAO_0003091-ZFA_0000600
def: "Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Trochlear_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CN-IV" RELATED []
synonym: "cranial nerve IV" RELATED []
synonym: "fourth cranial nerve" EXACT []
synonym: "pathetic nerve" RELATED []
synonym: "superior oblique nerve" EXACT []
synonym: "trochlear" RELATED []
synonym: "trochlear IV nerve" EXACT []
synonym: "Trochlear nerve [IV]" EXACT []
synonym: "trochlear nerve tree" EXACT []
xref: EHDAA2:0002090
xref: EMAPA:18218
xref: FMA:50865
xref: GAID:838
xref: HOG:0000705
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Trochlear_nerve.png/200px-Trochlear_nerve.png
xref: MA:0001105
xref: ncithesaurus:Trochlear_Nerve
xref: NIF_GrossAnatomy:birnlex_1654
xref: OpenCyc:Mx4rvyeBQ5wpEbGdrcN5Y29ycA
xref: TAO:0000600
xref: XAO:0003091
xref: ZFA:0000600
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0001645
name: trigeminal nerve
alt_id: UBERON:FMA_50866-MA_0001100-XAO_0003092-ZFA_0000697
def: "Cranial nerve that branches into the ophthalmic (supplying the skin of the nose and upper jaw) and the mandibular (supplying the lower jaw)." [ISBN:0471209627, Wikipedia:Trigeminal_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CN-V" RELATED []
synonym: "cranial nerve V" RELATED []
synonym: "fifth cranial nerve" EXACT []
synonym: "Trigeminal nerve [V]" EXACT []
synonym: "trigeminal nerve tree" EXACT []
synonym: "trigeminal V" EXACT [EHDAA2:0002084]
synonym: "trigeminal v nerve" EXACT []
xref: BTO:0001072
xref: EFO:0001402
xref: EHDAA2:0002084
xref: FMA:50866
xref: GAID:726
xref: HOG:0000704
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Gray778_Trigeminal.png/200px-Gray778_Trigeminal.png
xref: MA:0001100
xref: ncithesaurus:Trigeminal_Nerve
xref: NIF_GrossAnatomy:birnlex_869
xref: OpenCyc:Mx4rwMF8CJwpEbGdrcN5Y29ycA
xref: TAO:0000697
xref: XAO:0003092
xref: ZFA:0000697
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0001646
name: abducens nerve
alt_id: UBERON:FMA_50867-MA_0001087-XAO_0003093-ZFA_0000310
def: "Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Abducens_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Abducens nerve [VI]" EXACT []
synonym: "abducens nerve tree" EXACT []
synonym: "abducens VI nerve" EXACT []
synonym: "abducent nerve" RELATED []
synonym: "Abducent nerve [VI]" EXACT []
synonym: "CN-VI" RELATED []
synonym: "cranial nerve VI" RELATED []
synonym: "lateral rectus nerve" EXACT []
synonym: "nervus abducens" EXACT []
synonym: "sixth cranial nerve" EXACT []
xref: FMA:50867
xref: GAID:824
xref: HOG:0000697
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Abducens_nerve1.png/200px-Abducens_nerve1.png
xref: MA:0001087
xref: ncithesaurus:Abducens_Nerve
xref: NIF_GrossAnatomy:birnlex_876
xref: OpenCyc:Mx4rvjl41ZwpEbGdrcN5Y29ycA
xref: TAO:0000310
xref: XAO:0003093
xref: ZFA:0000310
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0001647
name: facial nerve
alt_id: UBERON:FMA_50868-MA_0001091-XAO_0003094-ZFA_0000664
def: "Cranial nerve that branches into the supraorbital (supplying the skin of the eye region and the lateral line organs here), the palatine (to the roof of the buccal cavity), and the hyomandibular (dividing into the jugular and mental branches)." [ISBN:0471209627, Wikipedia:Facial_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "branchiomeric cranial nerve" EXACT []
synonym: "CN-VII" RELATED []
synonym: "cranial nerve VII" RELATED []
synonym: "face nerve" EXACT [OBOL:automatic]
synonym: "Facial nerve [VII]" EXACT []
synonym: "facial nerve tree" EXACT []
synonym: "facial VII" EXACT [EHDAA2:0000489]
synonym: "facial VII nerve" EXACT []
synonym: "nerve of face" EXACT [OBOL:automatic]
synonym: "seventh cranial nerve" EXACT []
xref: EHDAA2:0000489
xref: FMA:50868
xref: GAID:719
xref: HOG:0000706
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Cranial_nerve_VII.svg/200px-Cranial_nerve_VII.svg.png
xref: MA:0001091
xref: ncithesaurus:Facial_Nerve
xref: NIF_GrossAnatomy:birnlex_827
xref: OpenCyc:Mx4rvthgEpwpEbGdrcN5Y29ycA
xref: TAO:0000664
xref: XAO:0003094
xref: ZFA:0000664
is_a: UBERON:0001785 ! cranial nerve
relationship: part_of UBERON:0001456
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0001033 ! gustatory system
[Term]
id: UBERON:0001648
name: vestibulocochlear nerve
alt_id: UBERON:FMA_50869-FMA_53431-MA_0001109-XAO_0003095-ZFA_0000247
def: "Cranial nerve that runs to the ear." [ISBN:0471209627, Wikipedia:Vestibulocochlear_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "acoustic nerve" EXACT []
synonym: "acoustic nerve (crosby)" EXACT []
synonym: "CN-VIII" EXACT []
synonym: "cochlear-vestibular nerve" EXACT []
synonym: "cochleovestibular nerve" EXACT []
synonym: "cranial nerve VIII" EXACT []
synonym: "eighth cranial nerve" EXACT []
synonym: "octaval nerve" RELATED []
synonym: "stato-acoustic nerve" EXACT []
synonym: "statoacoustic nerve" RELATED []
synonym: "Vestibulocochlear nerve [VIII]" EXACT []
synonym: "vestibulocochlear nerve tree" EXACT []
synonym: "vestibulocochlear VIII nerve" EXACT []
synonym: "VIIIth cranial nerve" EXACT []
xref: BTO:0003490
xref: EHDAA2:0002194
xref: FMA:50869
xref: GAID:839
xref: HOG:0000695
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray789.png/200px-Gray789.png
xref: MA:0001109
xref: NIF_GrossAnatomy:birnlex_890
xref: OpenCyc:Mx4rvVjMFZwpEbGdrcN5Y29ycA
xref: TAO:0000247
xref: XAO:0003095
xref: ZFA:0000247
is_a: UBERON:0001785 ! cranial nerve
relationship: continuous_with UBERON:0001844 ! cochlea
[Term]
id: UBERON:0001649
name: glossopharyngeal nerve
alt_id: UBERON:FMA_50870-MA_0001093-XAO_0003096-ZFA_0000668
def: "Cranial nerve that branches into the ramus communicans (to the skin), the pretrematic (to the walls of the pharynx and mouth, viscero-sensory fibers), and the larval post-trematic branch (lost in the adult)." [ISBN:0471209627, Wikipedia:Glossopharyngeal_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CN-IX" RELATED []
synonym: "cranial nerve IX" RELATED []
synonym: "glossopharyngeal IX" EXACT [EHDAA2:0000709]
synonym: "glossopharyngeal IX nerve" EXACT []
synonym: "Glossopharyngeal nerve [IX]" EXACT []
synonym: "glossopharyngeal nerve tree" EXACT []
synonym: "ninth cranial nerve" EXACT []
xref: EHDAA2:0000709
xref: FMA:50870
xref: GAID:827
xref: HOG:0000701
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray791.png/200px-Gray791.png
xref: MA:0001093
xref: ncithesaurus:Glossopharyngeal_Nerve
xref: NIF_GrossAnatomy:birnlex_899
xref: OpenCyc:Mx4rwIr5X5wpEbGdrcN5Y29ycA
xref: TAO:0000668
xref: XAO:0003096
xref: ZFA:0000668
is_a: UBERON:0001785 ! cranial nerve
relationship: part_of UBERON:0001033 ! gustatory system
[Term]
id: UBERON:0001650
name: hypoglossal nerve
alt_id: UBERON:FMA_50871-MA_0001094
def: "Nerve that innervates all the intrinsic and all but one of the extrinsic muscles of the tongue." [GO:0021566, Wikipedia:Hypoglossal_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hypoglossal nerve [XII]" EXACT []
synonym: "hypoglossal nerve tree" EXACT []
synonym: "hypoglossal XII" EXACT [EHDAA2:0000798]
synonym: "hypoglossal XII nerve" EXACT []
synonym: "twelfth cranial nerve" EXACT []
xref: BTO:0003386
xref: EHDAA2:0000798
xref: FMA:50871
xref: GAID:828
xref: HOG:0000693
xref: MA:0001094
xref: ncithesaurus:Hypoglossal_Nerve
xref: NIF_GrossAnatomy:birnlex_820
xref: OpenCyc:Mx4rv9eWA5wpEbGdrcN5Y29ycA
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0001651
name: right pulmonary artery
alt_id: UBERON:FMA_50872-MA_0002500
def: "The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]." [Wikipedia:Right_pulmonary_artery]
comment: TODO - add class 'pulmonary artery tree organ'
subset: uberon_slim
synonym: "right main pulmonary artery" EXACT []
synonym: "right pulmonary arterial tree" EXACT []
xref: FMA:50872
xref: galen:RightPulmonaryArtery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0002500
xref: ncithesaurus:Right_Pulmonary_Artery
is_a: UBERON:0002012 ! pulmonary artery
[Term]
id: UBERON:0001652
name: left pulmonary artery
alt_id: UBERON:FMA_50873-MA_0002032
def: "The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]." [Wikipedia:Left_pulmonary_artery]
comment: TODO - add class 'pulmonary artery tree organ'
subset: uberon_slim
synonym: "left main pulmonary artery" EXACT []
synonym: "left pulmonary arterial tree" EXACT []
xref: FMA:50873
xref: galen:LeftPulmonaryArtery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0002032
xref: ncithesaurus:Left_Pulmonary_Artery
is_a: UBERON:0002012 ! pulmonary artery
[Term]
id: UBERON:0001653
name: facial vein
alt_id: UBERON:FMA_50874-MA_0002115
def: "The anterior facial vein (facial vein) commences at the side of the root of the nose, and is a direct continuation of the angular vein where it also receives a small nasal branch. It lies behind the facial artery and follows a less tortuous course. It receives blood from the external palatine vein before it either joins the anterior branch of the retromandibular vein to form the common facial vein, or drains directly into the internal jugular vein. [WP,unvetted]." [Wikipedia:Facial_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "face vein" EXACT [OBOL:automatic]
synonym: "vein of face" EXACT [OBOL:automatic]
xref: FMA:50874
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002115
xref: ncithesaurus:Facial_Vein
xref: OpenCyc:Mx4rvziz3JwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
relationship: part_of UBERON:0001456
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0001654
name: supra-orbital vein
alt_id: UBERON:FMA_50904-MA_0002228
def: "The supraorbital vein begins on the forehead where it communicates with the frontal branch of the superficial temporal vein. It runs downward superficial to the Frontalis muscle, and joins the frontal vein at the medial angle of the orbit to form the angular vein. Previous to its junction with the frontal vein, it sends through the supraorbital notch into the orbit a branch which communicates with the ophthalmic vein; as this vessel passes through the notch, it receives the frontal diploic vein through a foramen at the bottom of the notch. The areas drained by this vessel are the forehead, eyebrow and upper eyelid. [WP,unvetted]." [Wikipedia:Supra-orbital_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "supraorbital vein" EXACT []
xref: FMA:50904
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002228
xref: ncithesaurus:Supra-orbital_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001655
name: submental vein
alt_id: UBERON:FMA_50925-MA_0002223
comment: This class was created automatically from a combination of ontologies
xref: FMA:50925
xref: MA:0002223
xref: ncithesaurus:Submental_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001656
name: retromandibular vein
alt_id: UBERON:FMA_50928-MA_0002117
def: "The retromandibular vein (temporomaxillary vein, posterior facial vein), formed by the union of the superficial temporal and maxillary veins, descends in the substance of the parotid gland, superficial to the external carotid artery but beneath the facial nerve, between the ramus of the mandible and the sternocleidomastoideus muscle. It divides into two branches: an anterior, which passes forward and unites with the anterior facial vein to form the common facial vein. a posterior, which is joined by the posterior auricular vein and becomes the external jugular vein. [WP,unvetted]." [Wikipedia:Retromandibular_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "posterior facial vein" EXACT []
xref: FMA:50928
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002117
xref: ncithesaurus:Temporo-maxillary_Vein
xref: OpenCyc:Mx4rv0bn95wpEbGdrcN5Y29ycA
is_a: UBERON:0001653 ! facial vein
[Term]
id: UBERON:0001657
name: superficial temporal vein
alt_id: UBERON:FMA_50932-MA_0002242
def: "The superficial temporal vein is a vein of the side of the head. [WP,unvetted]." [Wikipedia:Superficial_temporal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003748
xref: FMA:50932
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002242
xref: ncithesaurus:Superficial_Temporal_Vein
xref: OpenCyc:Mx4rvmANWZwpEbGdrcN5Y29ycA
is_a: UBERON:0001671 ! temporal vein
[Term]
id: UBERON:0001658
name: middle temporal vein
alt_id: UBERON:FMA_50935-MA_0002241
comment: This class was created automatically from a combination of ontologies
xref: FMA:50935
xref: MA:0002241
is_a: UBERON:0001671 ! temporal vein
[Term]
id: UBERON:0001659
name: transverse facial vein
alt_id: UBERON:FMA_50938-MA_0002247
def: "The superficial temporal vein is a vein of the side of the head. [WP,unvetted]." [Wikipedia:Transverse_facial_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:50938
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002247
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001660
name: maxillary vein
alt_id: UBERON:FMA_50941-MA_0002169
def: "The maxillary veins (internal maxillary vein in older sources) consist of a short trunk which accompanies the first part of the internal maxillary artery. It is formed by a confluence of the veins of the pterygoid plexus, and passes backward between the sphenomandibular ligament and the neck of the mandible, and unites with the superficial temporal vein to form the retromandibular vein. [WP,unvetted]." [Wikipedia:Maxillary_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:50941
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002169
xref: ncithesaurus:Internal_Maxillary_Vein
xref: OpenCyc:Mx4rvlDSc5wpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001661
name: deep temporal vein
alt_id: UBERON:FMA_50954-MA_0002240
comment: This class was created automatically from a combination of ontologies
xref: FMA:50954
xref: MA:0002240
xref: ncithesaurus:Deep_Temporal_Vein
is_a: UBERON:0001671 ! temporal vein
[Term]
id: UBERON:0001662
name: anterior auricular vein
alt_id: UBERON:FMA_50956-MA_0002083
def: "The anterior auricular veins are veins which drain the anterior aspect of the external ear. [WP,unvetted]." [Wikipedia:Anterior_auricular_veins]
comment: This class was created automatically from a combination of ontologies
xref: FMA:50956
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002083
xref: ncithesaurus:Anterior_Auricular_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001663
name: cerebral vein
alt_id: UBERON:FMA_50981-MA_0002096
def: "The cerebral veins are divisible into external and internal groups according to the outer surfaces or the inner parts of the hemispheres they drain into. The external veins are the superior cerebral veins, inferior cerebral veins, and middle cerebral vein. [WP,unvetted]." [Wikipedia:Cerebral_veins]
comment: This class was created automatically from a combination of ontologies
xref: FMA:50981
xref: GAID:530
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9f/Gray568.png/200px-Gray568.png
xref: MA:0002096
xref: ncithesaurus:Cerebral_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001664
name: inferior cerebral vein
alt_id: UBERON:FMA_50986-MA_0002097
def: "The inferior cerebral veins, of small size, drain the under surfaces of the hemispheres. Those on the orbital surface of the frontal lobe join the superior cerebral veins, and through these open into the superior sagittal sinus. Those of the temporal lobe anastomose with the middle cerebral and basal veins, and join the cavernous, sphenoparietal, and superior petrosal sinuses. [WP,unvetted]." [Wikipedia:Inferior_cerebral_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:50986
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Gray517.png/200px-Gray517.png
xref: MA:0002097
is_a: UBERON:0001663 ! cerebral vein
[Term]
id: UBERON:0001665
name: triceps surae
alt_id: UBERON:FMA_51062-MA_0002400
def: "The triceps surae is a pair of muscles located at the calf - the gastrocnemius and the soleus. These muscles both insert into the calcaneus, the bone of the heel of the human foot, and form the major part of the muscle of the back part of the lower leg, commonly known as the calf muscle. The triceps surae is connected to the foot through the Achilles tendon, and has 3 heads deriving from the 2 major masses of muscle. The superficial portion (the gastrocnemius) gives off 2 heads attaching to the base of the femur directly above the knee. The deep (profundis) mass of muscle (the soleus) forms the remaining head which attaches to the superior posterior area of the tibia. The triceps surae is innervated by the tibial nerve, specifically, nerve roots L5–S2. [WP,unvetted]." [Wikipedia:Triceps_surae]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sural triceps" RELATED []
xref: FMA:51062
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Illu_lower_extremity_muscles.jpg/200px-Illu_lower_extremity_muscles.jpg
xref: MA:0002400
xref: ncithesaurus:Triceps_Surae
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001666
name: flexor digitorum longus
alt_id: UBERON:FMA_51071-MA_0002299
def: "The Flexor digitorum longus is situated on the tibial side of the leg. At its origin it is thin and pointed, but it gradually increases in size as it descends. This muscle serves to curl the second, third, fourth, and fifth toes (flexion of phalanges II-V). [WP,unvetted]." [Wikipedia:Flexor_digitorum_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000466
xref: FMA:51071
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png
xref: MA:0002299
xref: ncithesaurus:Flexor_Digitorum_Longus
is_a: UBERON:0001383 ! muscle of leg
[Term]
id: UBERON:0001667
name: tibialis posterior
alt_id: UBERON:FMA_51099-MA_0002394
def: "The Tibialis posterior is the most central of all the leg muscles, and is located in the posterior compartment of the leg. It is the key stabilizing muscle of the lower leg. [WP,unvetted]." [Wikipedia:Tibialis_posterior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "tibialis caudalis" EXACT []
xref: BTO:0000867
xref: FMA:51099
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray442.png/200px-Gray442.png
xref: MA:0002394
xref: ncithesaurus:Tibialis_Caudalis
is_a: UBERON:0001383 ! muscle of leg
[Term]
id: UBERON:0001668
name: cerebellar vein
alt_id: UBERON:FMA_51227-MA_0002093
def: "Cerebellar veins are veins which drain the cerebellum. More specifically, they are: Superior cerebellar veins Inferior cerebellar veins [WP,unvetted]." [Wikipedia:Cerebellar_veins]
comment: This class was created automatically from a combination of ontologies
synonym: "cerebellum vein" EXACT [OBOL:automatic]
synonym: "epencephalon-1 vein" EXACT [OBOL:automatic]
synonym: "vein of cerebellum" EXACT [OBOL:automatic]
synonym: "vein of epencephalon-1" EXACT [OBOL:automatic]
xref: FMA:51227
xref: MA:0002093
xref: ncithesaurus:Cerebellar_Vein
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003499 ! implied link automatically realized ! brain blood vessel
relationship: part_of UBERON:0002037
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0001669
name: superior cerebellar vein
alt_id: UBERON:FMA_51232-MA_0002095
def: "The superior cerebellar veins pass partly forward and medialward, across the superior vermis, to end in the straight sinus and the internal cerebral veins, partly lateralward to the transverse and superior petrosal sinuses. [WP,unvetted]." [Wikipedia:Superior_cerebellar_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vein of superior cerebellar hemisphere" EXACT []
xref: FMA:51232
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray704.png/200px-Gray704.png
xref: MA:0002095
is_a: UBERON:0001668 ! cerebellar vein
[Term]
id: UBERON:0001670
name: inferior cerebellar vein
alt_id: UBERON:FMA_51233-MA_0002094
def: "The inferior cerebellar veins are of large size, end in the transverse, superior petrosal, and occipital sinuses. [WP,unvetted]." [Wikipedia:Inferior_cerebellar_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "inferior vein of cerebellar hemisphere" EXACT []
xref: FMA:51233
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray704.png/200px-Gray704.png
xref: MA:0002094
is_a: UBERON:0001668 ! cerebellar vein
[Term]
id: UBERON:0001671
name: temporal vein
alt_id: UBERON:FMA_51302-MA_0002239
def: "The superficial temporal vein is a vein of the side of the head. [WP,unvetted]." [Wikipedia:Temporal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:51302
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray557.png/200px-Gray557.png
xref: MA:0002239
xref: ncithesaurus:Temporal_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001672
name: anterior cerebral vein
alt_id: UBERON:FMA_51306-ZFA_0001067
comment: This class was created automatically from a combination of ontologies
synonym: "ACeV" RELATED []
synonym: "rostral cerebral vein" RELATED []
xref: FMA:51306
xref: TAO:0001067
xref: ZFA:0001067
is_a: UBERON:0001663 ! cerebral vein
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
relationship: part_of UBERON:0002200 ! vasculature of head
[Term]
id: UBERON:0001673
name: central retinal vein
alt_id: UBERON:FMA_51799-MA_0002213
def: "The central retinal vein (retinal vein) is a short vein that runs through the optic nerve and drains blood from the capillaries of the retina into the larger veins outside the eye. The anatomy of the veins of the orbit of the eye varies between individuals, and in some the central retinal vein drains into the superior ophthalmic vein, and in some it drains directly into the cavernous sinus. [WP,unvetted]." [Wikipedia:Central_retinal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "retinal vein" EXACT []
xref: FMA:51799
xref: GAID:524
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray572.png/200px-Gray572.png
xref: MA:0002213
xref: ncithesaurus:Retinal_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001674
name: masseteric vein
alt_id: UBERON:FMA_52519-MA_0002167
comment: This class was created automatically from a combination of ontologies
xref: FMA:52519
xref: MA:0002167
xref: ncithesaurus:Masseteric_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001675
name: trigeminal ganglion
alt_id: UBERON:FMA_52618-XAO_0000427-XAO_0000428-ZFA_0000295
def: "A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. Kimmel et al, 1995." [Wikipedia:Trigeminal_ganglion, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gasserian ganglia" RELATED PLURAL []
synonym: "gasserian ganglion" EXACT []
synonym: "gV" RELATED []
synonym: "semilunar ganglion" EXACT []
synonym: "trigeminal ganglia" RELATED PLURAL []
synonym: "trigeminal V ganglion" EXACT [MA:0001080]
synonym: "trigeminus ganglion" RELATED []
xref: BTO:0001231
xref: EFO:0000903
xref: EHDAA:2113
xref: EHDAA2:0002085
xref: FMA:52618
xref: GAID:725
xref: HOG:0000694
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Gray776.png/200px-Gray776.png
xref: MA:0001080
xref: MAT:0000511
xref: ncithesaurus:Trigeminal_Ganglion
xref: TAO:0000295
xref: XAO:0000427
xref: XAO:0000428
xref: ZFA:0000295
is_a: UBERON:0001714 ! ganglion of cranial nerve
relationship: develops_from UBERON:0003070 ! trigeminal placode
[Term]
id: UBERON:0001676
name: occipital bone
alt_id: UBERON:FMA_52735-MA_0001468
def: "A saucer-shaped membrane bone situated at the back and lower part of the cranium, is trapezoid in shape and curved on itself. It is pierced by a large oval aperture, the foramen magnum, through which the cranial cavity communicates with the vertebral canal." [Wikipedia:Occipital_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:52735
xref: GAID:227
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray194.png/200px-Gray194.png
xref: MA:0001468
xref: ncithesaurus:Occipital_Bone
xref: OpenCyc:Mx4rwQtsiZwpEbGdrcN5Y29ycA
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0001677
name: sphenoid bone
alt_id: UBERON:FMA_52736-MA_0001472
def: "an unpaired bone situated at the base of the skull in front of the temporal bone and basilar part of the occipital bone. The sphenoid bone is one of the seven bones that articulate to form the orbit. Its shape somewhat resembles that of a butterfly or bat with its wings extended." [Wikipedia:Sphenoid_bone]
comment: part of viscerocranium in FMA, part of chondrocranium in MA
subset: uberon_slim
synonym: "sphenoid" EXACT []
synonym: "sphenoidal bone" EXACT []
xref: EMAPA:18340
xref: FMA:52736
xref: GAID:230
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cranial_bones2.jpg/200px-Illu_cranial_bones2.jpg
xref: MA:0001472
xref: ncithesaurus:Sphenoid_Bone
xref: OpenCyc:Mx4rwAU9XpwpEbGdrcN5Y29ycA
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0001678
name: temporal bone
alt_id: UBERON:FMA_52737-MA_0001476
def: "The temporal bones are situated at the sides and base of the skull, and lateral to the temporal lobes of the cerebrum." [Wikipedia:Temporal_bone]
comment: The temporal bone consists of four parts: * Squama temporalis * Mastoid portion * Petrous portion (Petrosal ridge) * Tympanic part. Note the Temporal bone is not explicitly categorized to a part of the cranium in FMA.
subset: uberon_slim
xref: EHDAA:6035
xref: FMA:52737
xref: GAID:232
xref: HOG:0000800
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cranial_bones2.jpg/200px-Illu_cranial_bones2.jpg
xref: MA:0001476
xref: ncithesaurus:Temporal_Bone
xref: OpenCyc:Mx4rvbkAk5wpEbGdrcN5Y29ycA
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0001679
name: ethmoid
alt_id: UBERON:FMA_52740-MA_0001483-ZFA_0000323
def: "a bone in the skull that separates the nasal cavity from the brain. As such, it is located at the roof of the nose, between the two orbits. The cubical bone is lightweight due to a spongy construction. The ethmoid bone is one of the bones that makes up the orbit of the eye[WP]" [Wikipedia:Ethmoid]
comment: Note the WP states the Neurocranium contains the ethmoid bone, both MA and FMA place the ethmoid as part of the viscerocranium. FMA also has it in neurocranium (via basicranium). Ideally we would have non-overlapping divisions of the skull, but for now we follow FMA
subset: uberon_slim
synonym: "ethmoid bone" EXACT []
synonym: "ethmoidal bone" EXACT [MP:0000101]
xref: FMA:52740
xref: GAID:212
xref: HOG:0001317
xref: MA:0001483
xref: ncithesaurus:Ethmoid_Bone
xref: OpenCyc:Mx4rvuUPh5wpEbGdrcN5Y29ycA
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone
is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone
relationship: part_of UBERON:0001704 ! viscerocranium
relationship: part_of UBERON:0002517 ! basicranium
[Term]
id: UBERON:0001680
name: lacrimal bone
alt_id: UBERON:FMA_52741-MA_0001486
def: "the smallest and most fragile bone of the face, is situated at the front part of the medial wall of the orbit. It has two surfaces and four borders. In early lobe-finned fishes and ancestral tetrapods, the lacrimal bone is a relatively large and robust bone, running from the orbit to the nostrils. It forms part of the side of the face, between the nasal bones and the maxilla. In primitive forms, it is often accompanied by a much smaller septomaxilla bone, lying immediately behind the nasal opening, but this is lost in most modern species. The lacrimal bone is often smaller in living vertebrates, and is no longer always directly associated with the nasal opening, although it retains its connection with the orbit. The bone is entirely absent in living amphibians, as well as some reptilian species." [Wikipedia:Lacrimal_bone]
comment: Consider also ZFA:0000223 infraorbital 1 TODO CHECK
subset: uberon_slim
synonym: "lacrymal bone" EXACT []
xref: FMA:52741
xref: HOG:0001149
xref: MA:0001486
xref: ncithesaurus:Lacrimal_Bone
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0001681
name: nasal bone
alt_id: UBERON:FMA_52745-MA_0001494-ZFA_0000365
def: "Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish Cubbage and Mabee, 1996." [Wikipedia:Nasal_bone, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:52745
xref: GAID:222
xref: HOG:0001370
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Illu_facial_bones.jpg/200px-Illu_facial_bones.jpg
xref: MA:0001494
xref: ncithesaurus:Nasal_Bone
xref: OpenCyc:Mx4rwGOTZJwpEbGdrcN5Y29ycA
xref: TAO:0000365
xref: ZFA:0000365
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone
relationship: part_of UBERON:0000004 ! olfactory apparatus
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0001682
name: palatine bone
alt_id: UBERON:FMA_52746-MA_0001495
def: "A bone situated at the back part of the nasal cavity between the maxilla and the pterygoid process of the sphenoid. It contributes to the walls of three cavities: the floor and lateral wall of the nasal cavity, the roof of the mouth, and the floor of the orbit; it enters into the formation of two fossæ, the pterygopalatine and pterygoid fossæ; and one fissure, the inferior orbital fissure. he palatine bone somewhat resembles the letter L, and consists of a Horizontal plate of palatine bone and a Perpendicular plate of palatine bone and three outstanding processes—viz., the Pyramidal process of palatine bone, which is directed backward and lateralward from the junction of the two parts, and the Orbital process of palatine bone and Sphenoidal process of palatine bone, which surmount the vertical part, and are separated by a deep notch, the sphenopalatine notch. The human palatine articulates with six bones: the sphenoid, ethmoid, maxilla, inferior nasal concha, vomer and opposite palatine. In bony fish the palatine bone consists of the perpendicular plate only, lying on the inner edge of the maxilla[WP]." [Wikipedia:Palatine_bone]
subset: uberon_slim
xref: FMA:52746
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Gray996.png/200px-Gray996.png
xref: MA:0001495
xref: ncithesaurus:Palatine_Bone
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0001683
name: zygomatic bone
alt_id: UBERON:FMA_52747-MA_0001497
def: "The zygomatic bone (cheekbone, malar bone) is a paired bone of the human skull. It articulates with the maxilla, the temporal bone, the sphenoid bone and the frontal bone. The zygomatic is homologous to the jugal bone of other tetrapods. It is situated at the upper and lateral part of the face and forms the prominence of the cheek, part of the lateral wall and floor of the orbit, and parts of the temporal and infratemporal fossae [Fig. 1]. It presents a malar and a temporal surface; four processes, the frontosphenoidal, orbital, maxillary, and temporal; and four borders. The term zygomatic derives from the Greek zygoma meaning 'yoke'. The zygomatic bone is occasionally referred to as the zygoma, but this term may also refer to the zygomatic arch or the zygomatic process. [WP,unvetted]." [Wikipedia:Zygomatic_bone]
comment: HOG says is homologous to infraorbital 3, which is a dermal bone in dermatocranium. part of viscerocranium, chondrocranium in MA.
subset: uberon_slim
synonym: "cheek bone" EXACT []
synonym: "jugal bone" RELATED [GAID:225, Wikipedia:Zygomatic_bone]
synonym: "orbital bone" EXACT []
synonym: "zygoma" RELATED [GAID:225]
xref: FMA:52747
xref: GAID:225
xref: HOG:0001638
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray164.png/200px-Gray164.png
xref: MA:0001497
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone
is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone
relationship: part_of UBERON:0001567 ! cheek
relationship: part_of UBERON:0001704 ! viscerocranium
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0001684
name: mandible
alt_id: UBERON:FMA_52748-MA_0001487
def: "The bone that forms the lower jaw and holds the lower teeth in place[WP]." [Wikipedia:Mandible]
comment: 'mandible' also refers to either the upper or lower part of the beak in birds. Note in ZFA mandible/lower jaw are the same class.
subset: uberon_slim
synonym: "inferior maxillary bone" EXACT []
synonym: "lower jaw bone" BROAD SENSU []
synonym: "lower mandibula" NARROW SENSU [Wikipedia:Mandible]
synonym: "mandibulla" EXACT []
xref: BTO:0001748
xref: EFO:0001965
xref: EHDAA:8007
xref: EHDAA2:0001059
xref: FMA:52748
xref: GAID:68
xref: galen:Mandible
xref: HOG:0000510
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray176.png/200px-Gray176.png
xref: MA:0001487
xref: ncithesaurus:Mandible
is_a: UBERON:0001474 ! bone
is_a: UBERON:0004768 ! implied link automatically realized ! bone of lower jaw
relationship: develops_from UBERON:0005867 ! mandibular prominence
relationship: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0001685
name: hyoid bone
alt_id: UBERON:FMA_52749-MA_0001484
def: "The hyoid bone (lingual bone) (Latin os hyoideum) is a horseshoe shaped bone situated in the anterior midline of the neck between the chin and the thyroid cartilage. At rest, it lies at the level of the base of the mandible in the front and the third cervical vertebra behind. It is the only bone in the human skeleton not articulated to any other bone. It is held in place by thyroid ligaments. The hyoid bone provides attachment to the muscles of the floor of the mouth and the tongue above, the larynx below, and the epiglottis and pharynx behind. Its name is derived from the Greek word hyoeides meaning 'shaped like the letter upsilon' (υ). [WP,unvetted]." [Wikipedia:Hyoid_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0000684
xref: FMA:52749
xref: GAID:197
xref: HOG:0001325
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Gray186.png/200px-Gray186.png
xref: MA:0001484
xref: ncithesaurus:Hyoid_Bone
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0001686
name: auditory ossicle
alt_id: UBERON:FMA_52750-MA_0000254-XAO_0000214
def: "The ossicles (also called auditory ossicles) are the three smallest bones in the human body. They are contained within the middle ear space and serve to transmit sounds from the air to the fluid-filled labyrinth. The absence of the auditory ossicles would constitute a moderate-to-severe hearing loss. The term 'ossicles' literally means 'tiny bones' and commonly refers to the auditory ossicles, though the term may refer to any small bone throughout the body. [WP,unvetted]." [Wikipedia:Auditory_ossicle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "auditory bone" EXACT []
synonym: "ear bone" RELATED []
xref: FMA:52750
xref: HOG:0000461
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b0/Illu_auditory_ossicles.jpg/200px-Illu_auditory_ossicles.jpg
xref: MA:0000254
xref: ncithesaurus:Auditory_Ossicle
xref: XAO:0000214
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001756 ! middle ear
[Term]
id: UBERON:0001687
name: stapes
alt_id: UBERON:FMA_52751-MA_0001217
def: "The stapes or stirrup is the stirrup-shaped small bone or ossicle in the middle ear which is attached to the incus laterally and to the fenestra ovalis, the 'oval window' medially. The oval window is adjacent to the vestibule of the inner ear. The stapes is the smallest and lightest bone in the human body. The stapes transmits the sound vibrations from the incus to the membrane of the inner ear inside the fenestra ovalis. The stapes is also stabilized by the stapedius muscle, which is innervated by the facial nerve. In non-mammalian vertebrates, the bone homologous to the stapes is usually called the columella; however, in reptiles, either term may be used. As the stapes first develops embryologically from the 6th to 8th wk of life, it surrounds the stapedial artery, which supplies the majority of the vasculature of the embryonic head. After that period, the external carotid artery is generated and takes over for the stapedial artery, which subsequently involutes, leaving the stapes with a windowframe-like structure. [WP,unvetted]." [Wikipedia:Stapes]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "stirrup" EXACT []
xref: FMA:52751
xref: GAID:868
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c1/Gray918.png/200px-Gray918.png
xref: MA:0001217
xref: ncithesaurus:Stapes
xref: OpenCyc:Mx4rv5UnkZwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rwQwflpwpEbGdrcN5Y29ycA
is_a: UBERON:0001686 ! auditory ossicle
[Term]
id: UBERON:0001688
name: incus
alt_id: UBERON:FMA_52752-MA_0001215
def: "The incus or anvil is the anvil-shaped small bone or ossicle in the middle ear. It connects the malleus to the stapes. It was first described by Alessandro Achillin of Bologna. The incus transmits sound vibrations from the malleus to the stapes. The incus only exists in mammals, and is derived from a reptilian upper jaw bone, the quadrate bone. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Incus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:52752
xref: GAID:866
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray917.png/200px-Gray917.png
xref: MA:0001215
xref: ncithesaurus:Incus
is_a: UBERON:0001686 ! auditory ossicle
[Term]
id: UBERON:0001689
name: malleus
alt_id: UBERON:FMA_52753-MA_0001216
def: "The malleus or hammer is a hammer-shaped small bone or ossicle of the middle ear which connects with the incus and is attached to the inner surface of the eardrum. The word is Latin for hammer. It transmits the sound vibrations from the eardrum to the incus. The malleus is unique to mammals, and evolved from a lower jaw bone in basal amniotes called the articular, which still forms part of the jaw joint in reptiles. Embryologically it is derived from the first pharyngeal arch along with the rest of the bones of mastication, such as the maxilla and mandible. [WP,unvetted]." [Wikipedia:Malleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:52753
xref: GAID:867
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray916.png/200px-Gray916.png
xref: MA:0001216
xref: ncithesaurus:Malleus
is_a: UBERON:0001686 ! auditory ossicle
[Term]
id: UBERON:0001690
name: ear
alt_id: UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
def: "Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "auditory apparatus" RELATED []
xref: BTO:0000368
xref: EFO:0000826
xref: EHDAA:502
xref: EHDAA2:0000423
xref: FMA:52780
xref: GAID:62
xref: galen:Ear
xref: HOG:0000330
xref: MA:0000236
xref: MAT:0000138
xref: MIAA:0000138
xref: ncithesaurus:Ear
xref: NIF_GrossAnatomy:birnlex_1062
xref: OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA
xref: XAO:0000189
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0002105 ! vestibulo-auditory system
[Term]
id: UBERON:0001691
name: external ear
alt_id: UBERON:FMA_52781-MA_0000258-MIAA_0000147-XAO_0000190
def: "Part of the ear external to the tympanum (eardrum). It consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull[GO]." [GO:0042473, Wikipedia:External_ear]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "auricular region" EXACT []
synonym: "auricular region of head" EXACT []
synonym: "outer ear" EXACT []
xref: BTO:0002100
xref: EHDAA:3786
xref: EHDAA:5343
xref: EHDAA:5352
xref: EHDAA2:0000462
xref: FMA:52781
xref: GAID:104
xref: HOG:0000311
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Gray907.png/200px-Gray907.png
xref: MA:0000258
xref: MAT:0000147
xref: MIAA:0000147
xref: ncithesaurus:External_Ear
xref: NIF_GrossAnatomy:birnlex_1705
xref: OpenCyc:Mx4rwOHtXJwpEbGdrcN5Y29ycA
xref: XAO:0000190
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001690 ! ear
[Term]
id: UBERON:0001692
name: basioccipital bone
alt_id: UBERON:FMA_52858-MA_0001462-ZFA_0000472
def: "Large median unpaired cartilage bone that contacts the exocciptal, epiotic and pterotic dorsally, and the parasphenoid anteriorly. Forms the posteroventral hind margin of the cranium, articulates with the centrum of the first vertebra. Bears a posteroventral pharyngeal process that is flattened ventrally and opposes the pharyngeal teeth of the fifth pair of ceratobranchials." [Wikipedia:Basilar_part_of_occipital_bone, ZFIN:curator]
comment: TODO - check FMA
subset: uberon_slim
synonym: "basilar part of occipital bone" EXACT []
synonym: "basioccipital" EXACT []
xref: AAO:0000039
xref: FMA:52858
xref: HOG:0001152
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c4/Parsbasilaris%28young%29.PNG/200px-Parsbasilaris%28young%29.PNG
xref: MA:0001462
xref: TAO:0000472
xref: ZFA:0000472
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone
relationship: part_of UBERON:0001676 ! occipital bone
relationship: part_of UBERON:0002241 ! chondrocranium
relationship: part_of UBERON:0002517 ! basicranium
[Term]
id: UBERON:0001693
name: exoccipital bone
alt_id: UBERON:FMA_52859-MA_0001464-ZFA_0000661
def: "Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum." [Wikipedia:Lateral_parts_of_occipital_bone, ZFIN:curator]
comment: TODO - check FMA
subset: uberon_slim
synonym: "exoccipital" EXACT []
synonym: "lateral part of occipital bone" EXACT []
xref: AAO:0000147
xref: FMA:52859
xref: HOG:0001151
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Gray131.png/200px-Gray131.png
xref: MA:0001464
xref: TAO:0000661
xref: ZFA:0000661
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0001694
name: petrous part of temporal bone
alt_id: UBERON:FMA_52871-MA_0001477
def: "The temporal bones are situated at the sides and base of the skull. The temporal bone supports that part of the face known as the temple. [WP,unvetted]." [Wikipedia:Petrous_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pars petrosa (os temporale)" EXACT []
synonym: "petromastoid part of temporal bone" EXACT []
synonym: "petrosal bone" EXACT []
synonym: "petrous bone" EXACT []
synonym: "temporal bone petrous part" EXACT []
xref: EHDAA2:0001452
xref: FMA:52871
xref: GAID:234
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray137.png/200px-Gray137.png
xref: MA:0001477
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001678 ! temporal bone
[Term]
id: UBERON:0001695
name: squamous part of temporal bone
alt_id: UBERON:FMA_52883-MA_0001473
def: "the thin, platelike part of the temporal bone." [MP:0004423]
comment: This class was created automatically from a combination of ontologies
synonym: "pars squamosa (os temporale)" EXACT []
synonym: "squamosal bone" EXACT []
synonym: "squamous bone" EXACT []
xref: FMA:52883
xref: MA:0001473
is_a: UBERON:0001474 ! bone
[Term]
id: UBERON:0001697
name: orbit
alt_id: UBERON:FMA_53074-MA_0002482
def: "the orbital bone is the cavity or socket of the skull in which the eye and its appendages are situated." [Wikipedia:Orbit_(anatomy)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "orbit of skull" EXACT []
xref: AAO:0000343
xref: FMA:53074
xref: GAID:223
xref: galen:Orbit
xref: MA:0002482
xref: ncithesaurus:Orbit
xref: OpenCyc:Mx4rvW8EgZwpEbGdrcN5Y29ycA
xref: XAO:0003171
xref: ZFA:0001410
is_a: UBERON:0001474 ! bone
is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone
relationship: encloses UBERON:0000970 ! eye
relationship: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0001698
name: foramen ovale of skull
alt_id: UBERON:FMA_53155-MA_0001873
def: "one of the larger of the several holes at the base of the skull that transmit nerves through the skull. The foramen ovale is situated in the anterior part of the sphenoid bone, posteriolateral to the foramen rotundum.." [Wikipedia:Foramen_ovale_(skull)]
synonym: "foramen ovale" NARROW [AAO:0000169, FMA:53155]
synonym: "foramen ovale (skull)" EXACT [FMA:53155]
synonym: "foramen ovale basis cranii" EXACT [galen:ForamenOvaleBasisCranii]
xref: AAO:0000169
xref: EHDAA:10627
xref: EHDAA2:0000551
xref: EMAPA:18711
xref: FMA:53155
xref: galen:ForamenOvaleBasisCranii
xref: HOG:0001189
is_a: UBERON:0000464 ! anatomical space
disjoint_from: UBERON:0004754 ! foramen ovale of heart
relationship: part_of UBERON:0003129 ! skull
[Term]
id: UBERON:0001699
name: sensory root of facial nerve
alt_id: UBERON:FMA_53410-ZFA_0000679
def: "The nervus intermedius, or intermediate nerve, is the part of the facial nerve (cranial nerve VII) located between the motor component of the facial nerve and the vestibulocochlear nerve (cranial nerve VIII). It contains the sensory and parasympathetic fibers of the facial nerve. Upon reaching the facial canal, it joins with the motor root of the facial nerve at the geniculate ganglion. [WP,unvetted]." [Wikipedia:Intermediate_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intermediate nerve" EXACT []
synonym: "Wrisberg's nerve" EXACT []
xref: FMA:53410
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray788.png/200px-Gray788.png
xref: TAO:0000679
xref: ZFA:0000679
is_a: UBERON:0002211 ! segment of nerve
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0004733 ! implied link automatically realized ! segmental subdivision of hindbrain
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0001700
name: geniculate ganglion
alt_id: UBERON:FMA_53414-MA_0001076-ZFA_0001291
def: "The geniculate ganglion is an L-shaped collection of fibers and sensory neurons of the facial nerve located in the facial canal of the head. It receives fibers from the motor, sensory, and parasympathetic components of the facial nerve and sends fibers that will innervate the lacrimal glands, submandibular glands, sublingual glands, tongue, palate, pharynx, external auditory meatus, stapedius, posterior belly of the digastric muscle, stylohyoid muscle, and muscles of facial expression. Sensory and parasympathetic inputs are carried into the geniculate ganglion via the nervus intermedius. Motor fibers are carried via the facial nerve proper. The greater petrosal nerve, which carries sensory fibers as well as preganglionic parasympathetic fibers, emerges from the anterior aspect of the ganglion. The geniculate ganglion is one of several ganglia of the head and neck. Like the others, it is a bilaterally distributed structure, with each side of the face having a geniculate ganglion. [WP,unvetted]." [Wikipedia:Geniculate_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "facial ganglion" EXACT []
synonym: "facial VII ganglion" EXACT []
synonym: "ganglion genicularum" EXACT []
synonym: "genicular ganglion" EXACT []
synonym: "gVII" RELATED []
xref: EHDAA:5567
xref: EHDAA:6644
xref: EHDAA2:0000491
xref: FMA:53414
xref: GAID:718
xref: HOG:0000707
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray789.png/200px-Gray789.png
xref: MA:0001076
xref: ncithesaurus:Geniculate_Ganglion
xref: TAO:0001291
xref: ZFA:0001291
is_a: UBERON:0002420 ! basal ganglion
[Term]
id: UBERON:0001701
name: glossopharyngeal ganglion
alt_id: UBERON:FMA_53471-ZFA_0001301
def: "the group of neuron cell bodies associated with the ninth cranial nerve." [MP:0001084, MP:0001096]
comment: This class was created automatically from a combination of ontologies
synonym: "ganglion of glosspharyngeal nerve" EXACT []
synonym: "gIX" RELATED []
synonym: "glossopharyngeal IX ganglion" EXACT [MA:0001077]
synonym: "petrosal ganglion" RELATED []
xref: EHDAA2:0000710
xref: FMA:53471
xref: HOG:0000702
xref: MA:0001077
xref: TAO:0001301
xref: ZFA:0001301
is_a: UBERON:0001714 ! ganglion of cranial nerve
is_a: UBERON:0003338 ! implied link automatically realized ! ganglion of peripheral nervous system
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0001702
name: eyelash
alt_id: UBERON:FMA_53669-MA_0002702
def: "." [Wikipedia:Eyelash]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:53669
xref: GAID:73
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/N2_Human_eye.jpg/200px-N2_Human_eye.jpg
xref: MA:0002702
xref: ncithesaurus:Eyelash
xref: OpenCyc:Mx4rvVi41pwpEbGdrcN5Y29ycA
is_a: UBERON:0001037 ! strand of hair
[Term]
id: UBERON:0001703
name: neurocranium
alt_id: UBERON:FMA_53672-ZFA_0001580
def: "Portion of the cranium which encloses the brain. The neurocranium arises from neural crest cells (also responsible for the development of teeth, the adrenal medulla and the splanchnocranium) of the ectoderm. There is also some contribution of ectomesenchyme. In Chondrichthyes and other cartilaginous vertebrates this portion of the cranium does not ossify; it is not replaced via endochondral ossification." [Wikipedia:Cranium, ZFA:0001580]
comment: It includes the following bones: Ethmoid bone, Frontal bone, Occipital bone, Parietal bone, Sphenoid bone, Temporal bone. The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP] It seems MA uses 'neurocranium' as a synonym for chondrocranium
subset: uberon_slim
synonym: "brain box" EXACT []
synonym: "brain case" EXACT [ZFA:0001580]
synonym: "brain pan" RELATED [http://www.thefreedictionary.com/braincase]
synonym: "braincase" EXACT [ZFA:0001580]
xref: EHDAA2:0000243
xref: FMA:53672
xref: TAO:0001580
xref: XAO:0003170
xref: ZFA:0001580
is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
relationship: develops_from UBERON:0002342 ! neural crest
relationship: encloses UBERON:0000955 ! brain
relationship: part_of UBERON:0003128 ! cranium
relationship: spatially_disjoint_from UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0001704
name: viscerocranium
alt_id: UBERON:FMA_53673-MA_0000318
def: "The part of skull that is derived from branchial arches. The facial bones are the bones of the anterior and lower human skull. The splanchnocranium is derived from the neural crest cells (also responsible for the development of the neurocranium or, teeth and adrenal medulla)or from scleratone found in the somite block of the mesoderm. As with the neurocranium, in Chondricthyes and other cartilaginous vertebrates, they are not replaced via endochondral ossification. In tetrapods, such as amphibians and reptiles, the columella connecting to the tympanum is derived from the splanchnocranium. in mammals, the splanchnocranium derives the bones of the inner ear, the malleus, the incus and stapes[WP]. the part of the skull that comprises the facial bones[MP]." [MP:0005274, Wikipedia:Facial_skeleton]
comment: Includes: * Inferior nasal concha * Lacrimal bone * Mandible * Maxilla * Nasal bone * Palatine bone * Vomer * Zygomatic bone. The hyoid is sometimes included, and sometimes excluded (FMA includes it)[WP] See also notes for ethmoid bone.
synonym: "facial skeleton" EXACT []
synonym: "pharyngeal arch skeleton" RELATED [ZFA:0001216]
synonym: "pharyngeal skeleton" RELATED [ZFA:0001216]
synonym: "splanchnocranium" EXACT [HOG:0000315, Wikipedia:Viscerocranium]
xref: EHDAA:8361
xref: EHDAA2:0002206
xref: FMA:53673
xref: HOG:0000315
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Illu_facial_bones.jpg/200px-Illu_facial_bones.jpg
xref: MA:0000318
xref: XAO:0003176
xref: ZFA:0001216
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
relationship: develops_from UBERON:0002342 ! neural crest
relationship: develops_from UBERON:0002539 ! pharyngeal arch
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
relationship: part_of UBERON:0003129 ! skull
[Term]
id: UBERON:0001705
name: nail
alt_id: UBERON:FMA_54326-MA_0002703-MIAA_0000158
def: "a horn-like keratin structure covering the dorsal aspect of the terminal phalanges of fingers and toes[WP]." [Wikipedia:Nail_(anatomy)]
comment: TODO: check claw vs nail. A primate's nail consists of the unguis alone; the subunguis has disappeared.
subset: uberon_slim
synonym: "claw" RELATED []
synonym: "nail plate" EXACT [FMA:54326, Wikipedia:Nail_(anatomy)]
xref: EFO:0000956
xref: FMA:54326
xref: GAID:1320
xref: galen:Nail
xref: HOG:0001361
xref: MA:0002703
xref: MAT:0000158
xref: MIAA:0000158
xref: ncithesaurus:Nail
xref: OpenCyc:Mx4rvVjJv5wpEbGdrcN5Y29ycA
xref: XAO:0003103
is_a: UBERON:0000026 ! appendage
relationship: part_of UBERON:0002544 ! digit
[Term]
id: UBERON:0001706
name: nasal septum
alt_id: UBERON:FMA_54375-MA_0000285
def: "The nasal septum separates the left and right airways in the nose, dividing the two nostrils. It is depressed by the Depressor septi nasi muscle. [WP,unvetted]." [Wikipedia:Nasal_septum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:6809
xref: EHDAA2:0001234
xref: FMA:54375
xref: GAID:115
xref: HOG:0000017
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray854.png/200px-Gray854.png
xref: MA:0000285
xref: ncithesaurus:Nasal_Septum
xref: OpenCyc:Mx4rv7e-k5wpEbGdrcN5Y29ycA
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0003037 ! septum
relationship: develops_from UBERON:0004068 ! medial nasal prominence
relationship: part_of UBERON:0000004 ! olfactory apparatus
[Term]
id: UBERON:0001707
name: nasal cavity
alt_id: UBERON:FMA_54378-MA_0000284-ZFA_0000130
def: "a large air filled space above and behind the nose in the middle of the face[WP]." [Wikipedia:Nasal_cavity]
comment: the cavity includes and starts at the nares and reaches all the way through to the and includes the choanae, the posterior nasal apertures[HP]
subset: uberon_slim
synonym: "cavity of nose" EXACT []
synonym: "nasal fossa" EXACT [Wikipedia:Nasal_cavity]
synonym: "nasal pit" RELATED []
synonym: "olfactory cavity" RELATED []
synonym: "olfactory pit" RELATED INCONSISTENT [ZFA:0000130]
xref: AAO:0000314
xref: BTO:0002096
xref: EHDAA:4772
xref: EHDAA:6801
xref: EHDAA2:0001226
xref: FMA:54378
xref: GAID:350
xref: HOG:0000271
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg
xref: MA:0000284
xref: ncithesaurus:Nasal_Cavity
xref: TAO:0000130
xref: ZFA:0000130
is_a: UBERON:0002553 ! anatomical cavity
relationship: develops_from UBERON:0005870 ! olfactory pit
relationship: part_of UBERON:0000004 ! olfactory apparatus
relationship: part_of UBERON:0001557 ! upper respiratory tract
[Term]
id: UBERON:0001708
name: jaw
alt_id: UBERON:FMA_54396-MA_0001905-ZFA_0001227
def: "Bony structure of the mouth that holds the teeth. It consists of the MANDIBLE and the MAXILLA[MESH]. Skeletal and cartilagenous elements of the first pharyngeal arch[ZFA]." [Wikipedia:Jaw, ZFIN:curator]
comment: TODO CHECK ZFA
subset: uberon_slim
synonym: "jaws" RELATED []
synonym: "mandibular arch" RELATED []
synonym: "oral jaw skeleton" RELATED []
synonym: "pharyngeal arch 1 skeleton" RELATED []
synonym: "visceral arch 1" RELATED []
xref: BTO:0001749
xref: FMA:54396
xref: GAID:214
xref: galen:Jaw
xref: MA:0001905
xref: ncithesaurus:Jaw
xref: OpenCyc:Mx4rvVjjEZwpEbGdrcN5Y29ycA
xref: TAO:0001227
xref: ZFA:0001227
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0001709
name: upper jaw
alt_id: UBERON:FMA_54397-MA_0001908-XAO_0003087-ZFA_0001272
def: "The dorsal portion of the first pharyngeal arch, comprising the upper jaw." [Wikipedia:Upper_jaw, ZFIN:curator]
comment: Note isa/partof difference MA/FMA
subset: uberon_slim
synonym: "dorsal mandibular arch" RELATED []
synonym: "dorsal visceral arch 2" RELATED []
synonym: "palatoquadrate arch" EXACT []
synonym: "upper pharyngeal jaws" RELATED []
xref: AAO:0000620
xref: EHDAA:8025
xref: EHDAA2:0002118
xref: FMA:54397
xref: HOG:0000454
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Gray189.png/200px-Gray189.png
xref: MA:0001908
xref: ncithesaurus:Upper_Jaw
xref: TAO:0001272
xref: XAO:0003087
xref: ZFA:0001272
is_a: UBERON:0001708 ! jaw
[Term]
id: UBERON:0001710
name: lower jaw
alt_id: UBERON:FMA_54398-MA_0001906-XAO_0003084-ZFA_0001273
def: "The ventral portion of the first pharyngeal arch, comprising the lower jaw." [Wikipedia:Lower_jaw, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "mandible" RELATED []
synonym: "mandibular series" RELATED []
synonym: "ventral mandibular arch" EXACT []
xref: AAO:0000272
xref: EHDAA:7995
xref: EHDAA2:0001018
xref: FMA:54398
xref: HOG:0000453
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray176.png/200px-Gray176.png
xref: MA:0001906
xref: ncithesaurus:Lower_Jaw
xref: TAO:0001273
xref: XAO:0003084
xref: ZFA:0001273
is_a: UBERON:0001708 ! jaw
[Term]
id: UBERON:0001711
name: eyelid
alt_id: UBERON:FMA_54437-MA_0000268
def: "An eyelid is a thin fold of skin that covers and protects an eye. With the exception of the prepuce and the labia minora, it has the thinnest skin of the whole body. The levator palpebrae superioris muscle retracts the eyelid to 'open' the eye. This can be either voluntarily or involuntarily. The human eyelid features a row of eyelashes which serve to heighten the protection of the eye from dust and foreign debris, as well as from perspiration. 'Palpebral' (and 'blepharo') means relating to the eyelids. Its key function is to regularly spread the tears and other secretion on the eye surface to keep it moist, since the cornea must be continuously moist. They keep the eyes from drying out when asleep. Moreover, the blink reflex protects the eye from foreign bodies. [WP,unvetted]." [Wikipedia:Eyelid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "blepharon" EXACT []
synonym: "palpebra" RELATED []
xref: BTO:0002241
xref: EHDAA:9037
xref: EHDAA2:0000487
xref: FMA:54437
xref: GAID:72
xref: HOG:0000016
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Eye_makeup.jpg/200px-Eye_makeup.jpg
xref: MA:0000268
xref: ncithesaurus:Eyelid
xref: OpenCyc:Mx4rvVi4m5wpEbGdrcN5Y29ycA
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0001712
name: upper eyelid
alt_id: UBERON:FMA_54439-MA_0001267
def: "An eyelid is a thin fold of skin that covers and protects an eye. With the exception of the prepuce and the labia minora, it has the thinnest skin of the whole body. The levator palpebrae superioris muscle retracts the eyelid to 'open' the eye. This can be either voluntarily or involuntarily. The human eyelid features a row of eyelashes which serve to heighten the protection of the eye from dust and foreign debris, as well as from perspiration. 'Palpebral' (and 'blepharo') means relating to the eyelids. Its key function is to regularly spread the tears and other secretion on the eye surface to keep it moist, since the cornea must be continuously moist. They keep the eyes from drying out when asleep. Moreover, the blink reflex protects the eye from foreign bodies. [WP,unvetted]." [Wikipedia:Upper_eyelid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "superior eyelid" EXACT []
xref: EHDAA2:0002115
xref: FMA:54439
xref: HOG:0000389
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Eye_makeup.jpg/200px-Eye_makeup.jpg
xref: MA:0001267
xref: ncithesaurus:Upper_Eyelid
xref: OpenCyc:Mx4rvg4ohJwpEbGdrcN5Y29ycA
is_a: UBERON:0001711 ! eyelid
[Term]
id: UBERON:0001713
name: lower eyelid
alt_id: UBERON:FMA_54442-MA_0001263-XAO_0000007
def: "An eyelid is a thin fold of skin that covers and protects an eye. With the exception of the prepuce and the labia minora, it has the thinnest skin of the whole body. The levator palpebrae superioris muscle retracts the eyelid to 'open' the eye. This can be either voluntarily or involuntarily. The human eyelid features a row of eyelashes which serve to heighten the protection of the eye from dust and foreign debris, as well as from perspiration. 'Palpebral' (and 'blepharo') means relating to the eyelids. Its key function is to regularly spread the tears and other secretion on the eye surface to keep it moist, since the cornea must be continuously moist. They keep the eyes from drying out when asleep. Moreover, the blink reflex protects the eye from foreign bodies. [WP,unvetted]." [Wikipedia:Lower_eyelid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "inferior eyelid" EXACT []
xref: EHDAA2:0001015
xref: FMA:54442
xref: HOG:0000388
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Eye_makeup.jpg/200px-Eye_makeup.jpg
xref: MA:0001263
xref: ncithesaurus:Lower_Eyelid
xref: OpenCyc:Mx4rvW6GtJwpEbGdrcN5Y29ycA
xref: XAO:0000007
is_a: UBERON:0001711 ! eyelid
is_a: UBERON:0003102 ! surface structure
[Term]
id: UBERON:0001714
name: ganglion of cranial nerve
alt_id: UBERON:FMA_54502-MA_0000213
def: "." [Wikipedia:Cranial_nerve_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cranial ganglion/nerve" EXACT []
synonym: "cranial nerve ganglion" EXACT []
synonym: "cranial neural ganglion" EXACT []
synonym: "cranial neural tree organ ganglion" EXACT [OBOL:automatic]
synonym: "ganglion of cranial neural tree organ" EXACT [OBOL:automatic]
xref: FMA:54502
xref: MA:0000213
is_a: UBERON:0000045 ! ganglion
is_a: UBERON:0003339 ! implied link automatically realized ! ganglion of central nervous system
relationship: part_of UBERON:0001785
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0001785 ! cranial nerve
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0001715
name: oculomotor nuclear complex
alt_id: UBERON:FMA_54510-ZFA_0000553
def: "The fibers of the oculomotor nerve arise from a nucleus in the midbrain, which lies in the gray substance of the floor of the cerebral aqueduct and extends in front of the aqueduct for a short distance into the floor of the third ventricle. From this nucleus the fibers pass forward through the tegmentum, the red nucleus, and the medial part of the substantia nigra, forming a series of curves with a lateral convexity, and emerge from the oculomotor sulcus on the medial side of the cerebral peduncle. The nucleus of the oculomotor nerve does not consist of a continuous column of cells, but is broken up into a number of smaller nuclei, which are arranged in two groups, anterior and posterior. Those of the posterior group are six in number, five of which are symmetrical on the two sides of the middle line, while the sixth is centrally placed and is common to the nerves of both sides. The anterior group consists of two nuclei, an antero-medial and an antero-lateral . The nucleus of the oculomotor nerve, considered from a physiological standpoint, can be subdivided into several smaller groups of cells, each group controlling a particular muscle. A nearby nucleus, the Edinger-Westphal nucleus, is responsible for the autonomic functions of the oculomotor nerve, including pupillary constriction and lens accommodation. [WP,unvetted]." [Wikipedia:Nucleus_of_oculomotor_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "motor nucleus III" RELATED []
synonym: "nIII" RELATED []
synonym: "nucleus of oculomotor nerve" EXACT []
synonym: "nucleus of third cranial nerve" EXACT []
synonym: "oculomotor III nucleus" EXACT [MA:0001073]
synonym: "oculomotor nucleus" EXACT []
synonym: "third cranial nerve nucleus" EXACT []
xref: EFO:0002468
xref: FMA:54510
xref: HOG:0001389
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png
xref: MA:0001073
xref: ncithesaurus:Oculomotor_Nucleus
xref: NIF_GrossAnatomy:birnlex_1240
xref: TAO:0000553
xref: ZFA:0000553
is_a: UBERON:0000126 ! cranial nerve nucleus
[Term]
id: UBERON:0001716
name: palate
alt_id: UBERON:FMA_54549-FMA_55023-MA_0002476-MA_0002477-MIAA_0000161
def: "Partition that separates the nasal and oral cavities[GO]. The palate is divided into two parts, the anterior bony hard palate, and the posterior fleshy soft palate or velum.The maxillary nerve branch of the trigeminal nerve (V) supplies sensory innervation to the palate[WP]." [GO:0060021, Wikipedia:Palate]
comment: The soft palate is movable, consisting of muscle fibers sheathed in mucous membrane. It is responsible for closing off the nasal passages during the act of swallowing, and also for closing off the airway. During sneezing, it protects the nasal passage by diverting a portion of the excreted substance to the mouth.
subset: uberon_slim
synonym: "oral roof" EXACT []
synonym: "roof of mouth" EXACT []
xref: BTO:0001779
xref: EMAPA:18948
xref: FMA:54549
xref: GAID:152
xref: galen:Palate
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg
xref: MA:0002476
xref: ncithesaurus:Palate
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: adjacent_to UBERON:0000167 ! oral cavity
relationship: part_of UBERON:0000165 ! mouth
relationship: part_of UBERON:0001707 ! nasal cavity
[Term]
id: UBERON:0001717
name: spinal nucleus of trigeminal nerve
alt_id: UBERON:FMA_54565-MA_0001053
def: "The spinal trigeminal nucleus is a nucleus in the medulla that receives information about deep/crude touch, pain, and temperature from the ipsilateral face. The facial, glossopharyngeal, and vagus nerves also convey pain information from their areas to the spinal trigeminal nucleus. [WP,unvetted]." [Wikipedia:Spinal_trigeminal_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "spinal nucleus of cranial nerve v" EXACT []
synonym: "spinal trigeminal nucleus" EXACT [GO:0021741]
synonym: "trigeminal nerve spinal tract nucleus" EXACT []
synonym: "trigeminal spinal nucleus" EXACT []
synonym: "trigeminal v spinal sensory nucleus" EXACT []
xref: FMA:54565
xref: GAID:605
xref: HOG:0001357
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png
xref: MA:0001053
is_a: UBERON:0004132 ! trigeminal sensory nucleus
[Term]
id: UBERON:0001718
name: mesencephalic nucleus of trigeminal nerve
alt_id: UBERON:FMA_54568-ZFA_0000312
def: "The mesencephalic nucleus is involved with proprioception of the face, that is, the feeling of position of the muscles. Unlike many nuclei within the CNS, the mesencephalic nucleus contains no chemical synapses but are electrically coupled. Instead, neurons of this nucleus are pseudounipolar cells receiving proprioceptive information from the jaw, and sending projections to the motor trigeminal nucleus to mediate monosynaptic jaw reflexes. It is also the only structure in the CNS to contain the cell bodies of a primary afferent, which are usually contained within ganglia. [WP,unvetted]." [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Mesencephalic nucleus" BROAD []
synonym: "mesencephalic trigeminal nucleus" EXACT [GO:0021739]
synonym: "mesencephalic trigeminal V nucleus" EXACT []
synonym: "nucleus of mesencephalic root of v" EXACT []
synonym: "trigeminal mesencephalic nucleus" EXACT []
synonym: "trigeminal nerve mesencepahlic nucleus" EXACT []
synonym: "trigeminal V mesencephalic nucleus" EXACT [MA:0001057]
xref: FMA:54568
xref: HOG:0001354
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png
xref: MA:0001057
xref: NIF_GrossAnatomy:birnlex_1010
xref: TAO:0000312
xref: ZFA:0000312
is_a: UBERON:0004132 ! trigeminal sensory nucleus
[Term]
id: UBERON:0001719
name: nucleus ambiguus
alt_id: UBERON:FMA_54588-MA_0001050
def: "The nucleus ambiguus (literally 'ambiguous nucleus') is a region of histologically disparate cells located just dorsal to the inferior olivary nucleus in the lateral portion of the upper medulla. It receives upper motor neuron innervation directly via the corticobulbar tract This nucleus gives rise to the efferent motor fibers of the vagus nerve terminating in the laryngeal and pharyngeal muscles, as well as to the efferent motor fibers of the glossopharyngeal nerve (CN IX) terminating in the stylopharyngeus. [WP,unvetted]." [Wikipedia:Nucleus_ambiguus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ambiguus nucleus" EXACT []
xref: FMA:54588
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray695.png/200px-Gray695.png
xref: MA:0001050
xref: ncithesaurus:Nucleus_Ambiguus
xref: NIF_GrossAnatomy:birnlex_2650
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001720
name: cochlear nucleus
alt_id: UBERON:FMA_54603-ZFA_0001638
def: "The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted]." [Wikipedia:Cochlear_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cochlear nucleus of acoustic nerve" EXACT []
synonym: "cochlear nucleus of eighth cranial nerve" EXACT []
synonym: "cochlear VIII nucleus" EXACT [MA:0001012]
synonym: "nucleus of cochlear nerve" EXACT []
synonym: "statoacoustic (VIII) nucleus" EXACT []
synonym: "vestibulocochlear nucleus" RELATED []
xref: FMA:54603
xref: GAID:601
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png
xref: MA:0001012
xref: ncithesaurus:Cochlear_Nucleus
xref: ZFA:0001638
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0001721
name: inferior vestibular nucleus
alt_id: UBERON:FMA_54608-MA_0001054
def: "The inferior vestibular nucleus is the vestibular nucleus which lies near the fourth ventricle. [WP,unvetted]." [Wikipedia:Inferior_vestibular_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "descending vestibular nucleus" EXACT []
synonym: "spinal vestibular nucleus" EXACT []
xref: FMA:54608
xref: MA:0001054
xref: ncithesaurus:Spinal_Vestibular_Nucleus
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001722
name: medial vestibular nucleus
alt_id: UBERON:FMA_54611-MA_0001048
def: "The medial vestibular nucleus is one of the vestibular nuclei. It is located in the medulla oblongata. Lateral vestibulo-spinal tract (lateral vestibular nucleus “Deiters”)- via ventrolateral medulla and spinal cord to ventral funiculus (lumbo-sacral segments). Ipsilaterally for posture Medial vestibulo-spinal tract (medial, lateral, inferior, vestibular nuclei), bilateral projection via descending medial longitudinal fasciculus to cervical segments. DESCENDING MLF. Bilaterally for head/neck/eye movements [WP,unvetted]." [Wikipedia:Medial_vestibular_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "chief vestibular nucleus" EXACT []
synonym: "dorsal vestibular nucleus" EXACT []
synonym: "nucleus of schwalbe" EXACT []
synonym: "principal vestibular nucleus" EXACT []
synonym: "Schwalbe's nucleus" EXACT []
synonym: "triangular nucleus" EXACT []
xref: FMA:54611
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray700.png/200px-Gray700.png
xref: MA:0001048
xref: ncithesaurus:Medial_Vestibular_Nucleus
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001723
name: tongue
alt_id: UBERON:FMA_54640-MA_0000347-MIAA_0000040-XAO_0000446
def: "The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in man other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech[GO]." [GO:0043586, Wikipedia:Tongue]
subset: uberon_slim
xref: BTO:0001385
xref: EFO:0000833
xref: EHDAA:9144
xref: EHDAA2:0002062
xref: FMA:54640
xref: GAID:816
xref: HOG:0000419
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Tongue.agr.jpg/200px-Tongue.agr.jpg
xref: MA:0000347
xref: MAT:0000040
xref: MIAA:0000040
xref: ncithesaurus:Tongue
xref: OpenCyc:Mx4rvVjmJ5wpEbGdrcN5Y29ycA_53KXLq9EdqAAAACs6hnmQ
xref: XAO:0000446
xref: ZFA:0005333
is_a: UBERON:0000062 ! organ
is_a: UBERON:0003212 ! implied link automatically realized ! gustatory organ
relationship: develops_from UBERON:0002539 ! pharyngeal arch
relationship: part_of UBERON:0000165 ! mouth
relationship: part_of UBERON:0001033 ! gustatory system
[Term]
id: UBERON:0001724
name: sphenoidal sinus
alt_id: UBERON:FMA_54683-MA_0001795
def: "The sphenoidal sinuses (or sphenoid) contained within the body of the sphenoid vary in size and shape; owing to the lateral displacement of the intervening septum they are rarely symmetrical. The following are their average measurements: vertical height, 2.2 cm. ; transverse breadth, 2 cm. ; antero-posterior depth, 2.2 cm. [WP,unvetted]." [Wikipedia:Sphenoidal_sinus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sphenoid sinus" EXACT []
xref: FMA:54683
xref: GAID:359
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Gray856.png/200px-Gray856.png
xref: MA:0001795
xref: ncithesaurus:Sphenoid_Sinus
xref: OpenCyc:Mx4rwEIoz5wpEbGdrcN5Y29ycA
is_a: UBERON:0001825 ! paranasal sinus
[Term]
id: UBERON:0001725
name: cranial synchondrosis
alt_id: UBERON:FMA_54816-MA_0001502
def: "the cartilaginous joints of the skull; these include sphenoethmoidal synchondrosis, sphenooccipital synchondrosis, sphenopetrosal synchondrosis, petrooccipital synchondrosis, anterior intraoccipital synchondrosis and posterior intraoccipital synchondrosis." [http://www.medilexicon.com/medicaldictionary.php?t=87514]
xref: FMA:54816
xref: MA:0001502
is_a: UBERON:0002215 ! synchondrosis
is_a: UBERON:0003685 ! implied link automatically realized ! cranial suture
relationship: part_of UBERON:0003128
intersection_of: UBERON:0002215 ! synchondrosis
intersection_of: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0001726
name: papilla of tongue
alt_id: UBERON:FMA_54819-MA_0001593
comment: This class was created automatically from a combination of ontologies
synonym: "lingual papilla" EXACT []
synonym: "tongue papilla" EXACT []
xref: FMA:54819
xref: MA:0001593
xref: NIF_GrossAnatomy:birnlex_4102
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0001727
name: taste bud
alt_id: UBERON:FMA_54825-MA_0001591-XAO_0000445-ZFA_0001074
def: "Taste buds are small structures on the upper surface of the tongue, soft palate, upper esophagus and epiglottis that provide information about the taste of food being eaten. These structures are involved in detecting the five elements of taste perception: salty, sour, bitter, sweet, and umami (or savory). Via small openings in the tongue epithelium, called taste pores, parts of the food dissolved in saliva come into contact with the taste receptors. These are located on top of the taste receptor cells that constitute the taste buds. The taste receptor cells send information detected by clusters of various receptors and ion channels to the gustatory areas of the brain via the seventh, ninth and tenth cranial nerves. The human tongue has about 10,000 taste buds. [WP,unvetted]." [Wikipedia:Taste_bud]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "taste buds" RELATED []
xref: BTO:0000989
xref: FMA:54825
xref: GAID:815
xref: HOG:0000130
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5a/Gray1018.png/200px-Gray1018.png
xref: MA:0001591
xref: NIF_GrossAnatomy:birnlex_4101
xref: OpenCyc:Mx4rvVjan5wpEbGdrcN5Y29ycA
xref: TAO:0001074
xref: XAO:0000445
xref: ZFA:0001074
is_a: UBERON:0000064 ! organ part
relationship: develops_from UBERON:0001723 ! tongue
relationship: develops_from UBERON:0001731 ! cavity of pharynx
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0001728
name: nasopharynx
alt_id: UBERON:FMA_54878-MA_0000443
def: "uppermost part of the pharynx. It extends from the base of the skull to the upper surface of the soft palate;[1] it differs from the oral and laryngeal parts of the pharynx in that its cavity always remains patent (open)[WP]. In front it communicates through the choanae with the nasal cavities. On its lateral wall is the pharyngeal ostium of the auditory tube, somewhat triangular in shape, and bounded behind by a firm prominence, the torus tubarius or cushion, caused by the medial end of the cartilage of the tube which elevates the mucous membrane." [Wikipedia:Nasopharynx]
subset: uberon_slim
synonym: "nasal part of pharynx" EXACT []
synonym: "rhinopharynx" EXACT []
xref: BTO:0000662
xref: EHDAA:7086
xref: EHDAA2:0001239
xref: FMA:54878
xref: GAID:339
xref: HOG:0000375
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Illu_pharynx.jpg/200px-Illu_pharynx.jpg
xref: MA:0000443
xref: MAT:0000447
xref: ncithesaurus:Nasopharynx
xref: OpenCyc:Mx4rwUPoDJwpEbGdrcN5Y29ycA
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001042 ! pharynx
relationship: part_of UBERON:0001557 ! upper respiratory tract
[Term]
id: UBERON:0001729
name: oropharynx
alt_id: UBERON:FMA_54879-MA_0000351
def: "The Oropharynx (oral part of the pharynx) reaches from the Uvula to the level of the hyoid bone. It opens anteriorly, through the isthmus faucium, into the mouth, while in its lateral wall, between the two palatine arches, is the palatine tonsil. [WP,unvetted]." [Wikipedia:Oropharynx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "oral part of pharynx" EXACT []
xref: EFO:0001976
xref: FMA:54879
xref: GAID:340
xref: HOG:0000457
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4a/Illu_pharynx.jpg/200px-Illu_pharynx.jpg
xref: MA:0000351
xref: MAT:0000446
xref: ncithesaurus:Oropharynx
xref: OpenCyc:Mx4rwACoxpwpEbGdrcN5Y29ycA
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001007 ! digestive system
relationship: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0001730
name: extrinsic ligament of larynx
alt_id: UBERON:FMA_54921-MA_0001756
comment: This class was created automatically from a combination of ontologies
synonym: "laryngeal extrinsic ligament" EXACT []
xref: FMA:54921
xref: MA:0001756
is_a: UBERON:0001743 ! ligament of larynx
[Term]
id: UBERON:0001731
name: cavity of pharynx
alt_id: UBERON:FMA_54935-XAO_0000105
comment: This class was created automatically from a combination of ontologies
synonym: "lumen of pharynx" EXACT []
synonym: "pharyngeal cavity" EXACT []
xref: BTO:0002097
xref: FMA:54935
xref: XAO:0000105
is_a: UBERON:0002553 ! anatomical cavity
relationship: develops_from UBERON:0001041 ! foregut
relationship: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0001732
name: pharyngeal tonsil
alt_id: UBERON:FMA_54970-MA_0000774
def: "Adenoids (or pharyngeal tonsils, or nasopharyngeal tonsils) are a mass of lymphoid tissue situated at the very back of the nose, in the roof of the nasopharynx, where the nose blends into the mouth. Normally, in children, they make a soft mound in the roof and posterior wall of the nasopharynx, just above and behind the uvula. [WP,unvetted]." [Wikipedia:Pharyngeal_tonsil]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adenoid" EXACT []
synonym: "nasopharyngeal tonsil" EXACT []
synonym: "tonsil of luschka" EXACT []
xref: BTO:0000777
xref: EFO:0001401
xref: FMA:54970
xref: GAID:1288
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/be/Gray994-adenoid.png/200px-Gray994-adenoid.png
xref: MA:0000774
xref: ncithesaurus:Pharyngeal_Tonsil
is_a: UBERON:0002372 ! tonsil
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001728 ! nasopharynx
[Term]
id: UBERON:0001733
name: soft palate
alt_id: UBERON:FMA_55021-MA_0002412-MIAA_0000039
def: "soft tissue constituting the back of the roof of the mouth. The soft palate is distinguished from the hard palate at the front of the mouth in that it does not contain bone[WP]. The soft palate is the posterior portion of the palate extending from the posterior edge of the hard palate[GO]." [GO:0060023, Wikipedia:Soft_palate]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "muscular palate" RELATED [Wikipedia:Soft_palate]
synonym: "velum" RELATED [Wikipedia:Soft_palate]
xref: EMAPA:18949
xref: FMA:55021
xref: GAID:1284
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Tonsils_diagram.jpg/200px-Tonsils_diagram.jpg
xref: MA:0002412
xref: MAT:0000039
xref: MIAA:0000039
xref: ncithesaurus:Soft_Palate
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001716 ! palate
[Term]
id: UBERON:0001734
name: uvula
alt_id: UBERON:FMA_55022-MA_0001006
def: "Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers. The uvula, hanging from the end of the soft palate, is responsible for the sound of snoring. Touching the uvula or the end of the soft palate evokes a strong gag reflex in most people." [Wikipedia:Palatine_uvula]
subset: uberon_slim
synonym: "palatine uvula" EXACT []
synonym: "uvula of palate" EXACT []
xref: EFO:0001386
xref: FMA:55022
xref: GAID:1285
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Tonsils_diagram.jpg/200px-Tonsils_diagram.jpg
xref: ncithesaurus:Uvula
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001733 ! soft palate
[Term]
id: UBERON:0001735
name: tonsillar ring
alt_id: UBERON:FMA_55070-MA_0000752
def: "lymphoid tissue ring located in the pharynx and to the back of the oral cavity. The ring consists of (from superior to inferior): Pharyngeal tonsil (also known as 'adenoids' when infected) Tubal tonsil (where Eustachian tube opens in the nasopharynx) Palatine tonsils (commonly called 'the tonsils' in the vernacular, less commonly termed 'faucial tonsils') Lingual tonsils Some animals, but not humans, have one or two additional tonsils: Soft palate tonsil Paraepiglottic tonsil[WP]." [Wikipedia:Waldeyer's_ring]
comment: see also FMA:79771 naso-pharyngeal lymphoid tissue
subset: uberon_slim
synonym: "oropharyngeal lymphoid tissue" EXACT []
synonym: "pharyngeal lymphatic ring" EXACT []
synonym: "pharyngeal lymphoid ring" EXACT []
synonym: "Waldeyer's ring" EXACT []
synonym: "Waldeyer's tonsillar ring" EXACT []
xref: FMA:55070
xref: MA:0000752
xref: ncithesaurus:Waldeyers_Tonsillar_Ring
is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue
relationship: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0001736
name: submandibular gland
alt_id: UBERON:FMA_55093-MA_0001589
def: "The paired submandibular glands (submaxillary glands) are salivary glands located beneath the floor of the mouth. In humans, they account for 70% of the salivary volume and weigh about 15 grams. [WP,unvetted]." [Wikipedia:Submandibular_gland]
comment: TODO check SSG vs SG
subset: uberon_slim
synonym: "submandibular salivary gland" RELATED []
synonym: "submaxillary gland" RELATED []
xref: BTO:0001316
xref: EFO:0001387
xref: FMA:55093
xref: GAID:942
xref: HOG:0000364
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Illu_quiz_hn_02.jpg/200px-Illu_quiz_hn_02.jpg
xref: MA:0001589
xref: ncithesaurus:Submandibular_Gland
is_a: UBERON:0001829 ! major salivary gland
[Term]
id: UBERON:0001737
name: larynx
alt_id: UBERON:FMA_55097-MA_0000414-MIAA_0000187-XAO_0003081
def: "Heterogeneous cluster that connects the pharynx to the tracheobronchial tree. Examples: There is only one larynx." [Wikipedia:Larynx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0000268
xref: BTO:0001208
xref: EFO:0000838
xref: FMA:55097
xref: GAID:108
xref: galen:Larynx
xref: HOG:0001279
xref: MA:0000414
xref: MAT:0000187
xref: MIAA:0000187
xref: ncithesaurus:Larynx
xref: OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA
xref: XAO:0003081
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001557 ! upper respiratory tract
[Term]
id: UBERON:0001738
name: thyroid cartilage
alt_id: UBERON:FMA_55099-MA_0001764
def: "The thyroid cartilage is the largest of the nine cartilages that make up the laryngeal skeleton, the cartilage structure in and around the trachea that contains the larynx. It is composed of two plate-like laminae that fuse on the anterior side of the cartilage to form a peak, called the laryngeal prominence. This prominence is often referred to as the 'pomus Adamus' or 'Adam's apple'. The laryngeal prominence is more prominent in adult male than female because of the difference in the size of the angle: 90° in male and 120° in female. The lip of the thyroid cartilage just superior to the laryngeal prominence is called the superior thyroid notch, while the notch inferior to the thyroid angle is called the inferior thyroid notch. Its posterior border is elongated both inferiorly and superiorly to form the superior horn of thyroid cartilage and inferior horn of thyroid cartilage. [WP,unvetted]." [Wikipedia:Thyroid_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003655
xref: EHDAA:9395
xref: EHDAA2:0002030
xref: FMA:55099
xref: GAID:112
xref: HOG:0001365
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8a/Larynx_external_en.svg/200px-Larynx_external_en.svg.png
xref: MA:0001764
xref: ncithesaurus:Thyroid_Cartilage
is_a: UBERON:0001739 ! laryngeal cartilage
[Term]
id: UBERON:0001739
name: laryngeal cartilage
alt_id: UBERON:FMA_55108-MA_0001758
def: "the cartilaginous structures that support the larynx." [MP:0002256]
comment: This class was created automatically from a combination of ontologies
synonym: "cartilage of larynx" EXACT []
synonym: "larynx cartilage" EXACT []
xref: BTO:0003660
xref: EHDAA:8157
xref: FMA:55108
xref: GAID:107
xref: MA:0001758
xref: ncithesaurus:Laryngeal_Cartilage
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002236 ! costal cartilage
is_a: UBERON:0003406 ! implied link automatically realized ! cartilage of respiratory system
is_a: UBERON:0003583 ! implied link automatically realized ! larynx connective tissue
relationship: part_of UBERON:0001737
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0001740
name: arytenoid cartilage
alt_id: UBERON:FMA_55109-MA_0001759
def: "The arytenoid cartilages are a pair of small three-sided pyramids which form part of the larynx, to which the vocal cords are attached. Each is pyramidal in form, and has three surfaces, a base, and an apex. [WP,unvetted]." [Wikipedia:Arytenoid_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0000674
xref: FMA:55109
xref: GAID:109
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray950.png/200px-Gray950.png
xref: MA:0001759
xref: ncithesaurus:Arytenoid_Cartilage
is_a: UBERON:0001739 ! laryngeal cartilage
[Term]
id: UBERON:0001741
name: corniculate cartilage
alt_id: UBERON:FMA_55110-MA_0001885
def: "The corniculate cartilages (cartilages of Santorini) are two small conical nodules consisting of yellow elastic cartilage, which articulate with the summits of the arytenoid cartilages and serve to prolong them posteriorly and medially. They are situated in the posterior parts of the aryepiglottic folds of mucous membrane, and are sometimes fused with the arytenoid cartilages. [WP,unvetted]." [Wikipedia:Corniculate_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cartilage of santorini" EXACT []
synonym: "Santorini's cartilage" EXACT []
xref: FMA:55110
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/56/Gray952.png/200px-Gray952.png
xref: MA:0001885
xref: ncithesaurus:Corniculate_Cartilage
is_a: UBERON:0001739 ! laryngeal cartilage
is_a: UBERON:0001996 ! elastic cartilage
[Term]
id: UBERON:0001742
name: epiglottic cartilage
alt_id: UBERON:FMA_55112-MA_0001763
def: "." [Wikipedia:Epiglottic_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:55112
xref: MA:0001763
xref: ncithesaurus:Epiglottic_Cartilage
is_a: UBERON:0001739 ! laryngeal cartilage
is_a: UBERON:0001996 ! elastic cartilage
[Term]
id: UBERON:0001743
name: ligament of larynx
alt_id: UBERON:FMA_55131-MA_0001755
def: "A ligament that is part of a larynx [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "articular ligament of larynx" EXACT [OBOL:automatic]
synonym: "fibrous ligament of larynx" EXACT [OBOL:automatic]
synonym: "laryngeal ligament" EXACT []
synonym: "larynx articular ligament" EXACT [OBOL:automatic]
synonym: "larynx fibrous ligament" EXACT [OBOL:automatic]
synonym: "larynx ligament" EXACT []
synonym: "larynx true ligament" EXACT [OBOL:automatic]
synonym: "true ligament of larynx" EXACT [OBOL:automatic]
xref: FMA:55131
xref: MA:0001755
xref: ncithesaurus:Laryngeal_Ligament
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003583 ! implied link automatically realized ! larynx connective tissue
relationship: part_of UBERON:0001737
intersection_of: UBERON:0000211 ! ligament
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0001744
name: lymphoid tissue
alt_id: UBERON:FMA_55220-MA_0002436
def: "Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]." [Wikipedia:Lymphoid_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lymphatic tissue" EXACT []
synonym: "lymphocytic tissue" EXACT []
xref: BTO:0000753
xref: FMA:55220
xref: GAID:342
xref: galen:LymphoidTissue
xref: MA:0002436
xref: ncithesaurus:Lymphoid_Tissue
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0002193 ! hemolymphoid system
[Term]
id: UBERON:0001745
name: secondary nodular lymphoid tissue
alt_id: UBERON:FMA_55224-MA_0000744
def: "sites within lymph nodes in peripheral lymph tissues where intense mature B lymphocytes, otherwise known as Centrocytes rapidly proliferate, differentiate, mutate through somatic hypermutation and class switch during antibody responses. Germinal centers are an important part of the B-cell humoral immune response. They develop dynamically after the activation of B-cells by T-dependent antigen. Histologically, the GCs describe microscopically distinguishable parts in lymphoid tissues[WP]. A germinal center is a specialized microenvironment formed when activated B cells enter lymphoid follicles. Germinal centers are the foci for B cell proliferation and somatic hypermutation[GO]." [GO:0002467, Wikipedia:Germinal_center]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "germinal center" EXACT []
synonym: "lymph node germinal center" RELATED []
synonym: "lymph node secondary follicle" EXACT []
synonym: "peripheral lymphoid tissue" EXACT []
synonym: "secondary lymphoid nodule" EXACT []
synonym: "secondary lymphoid tissue" EXACT []
xref: BTO:0003671
xref: FMA:55224
xref: GAID:946
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Keimzentrum.jpg/200px-Keimzentrum.jpg
xref: MA:0000744
xref: ncithesaurus:Germinal_Center
is_a: UBERON:0001744 ! lymphoid tissue
relationship: part_of UBERON:0000029 ! lymph node
[Term]
id: UBERON:0001746
name: fibrous capsule of thyroid gland
alt_id: UBERON:FMA_55513-MA_0002675
comment: This class was created automatically from a combination of ontologies
synonym: "thyroid capsule" EXACT []
synonym: "thyroid gland capsule" EXACT []
xref: FMA:55513
xref: MA:0002675
xref: ncithesaurus:Thyroid_Gland_Capsule
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0001747
name: parenchyma of thyroid gland
alt_id: UBERON:FMA_55515-MA_0000730
def: "A parenchyma that is part of a thyroid follicle [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "parenchyma of thyroid" EXACT [OBOL:automatic]
synonym: "parenchyma of thyroid follicle" EXACT [OBOL:automatic]
synonym: "parenchyma of thyroid gland follicle" EXACT [OBOL:automatic]
synonym: "thyroid follicle parenchyma" EXACT [OBOL:automatic]
synonym: "thyroid gland follicle parenchyma" EXACT [OBOL:automatic]
synonym: "thyroid gland parenchyma" EXACT []
synonym: "thyroid parenchyma" EXACT [OBOL:automatic]
xref: FMA:55515
xref: MA:0000730
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma
relationship: part_of UBERON:0002046
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0002046 ! thyroid gland
relationship: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0001748
name: capsule of parathyroid gland
alt_id: UBERON:FMA_55566-MA_0002676
comment: This class was created automatically from a combination of ontologies
synonym: "parathyroid gland capsule" EXACT []
xref: FMA:55566
xref: MA:0002676
xref: ncithesaurus:Parathyroid_Gland_Capsule
is_a: UBERON:0003893 ! capsule
relationship: surrounds UBERON:0001132
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0001132 ! parathyroid gland
relationship: surrounds UBERON:0001132 ! parathyroid gland
[Term]
id: UBERON:0001749
name: parenchyma of parathyroid gland
alt_id: UBERON:FMA_55569-MA_0002677
def: "A parenchyma that is part of a parathyroid gland [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "parathyroid gland parenchyma" EXACT []
synonym: "parathyroid parenchyma" EXACT [OBOL:automatic]
synonym: "parenchyma of parathyroid" EXACT [OBOL:automatic]
xref: FMA:55569
xref: MA:0002677
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma
relationship: part_of UBERON:0001132
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0001132 ! parathyroid gland
relationship: part_of UBERON:0001132 ! parathyroid gland
[Term]
id: UBERON:0001750
name: lacrimal apparatus
alt_id: UBERON:FMA_55605-MA_0000274
def: "The lacrimal apparatus is the physiologic system containing the orbital structures for tear production and drainage. It consists of: (a) the lacrimal gland, which secretes the tears, and its excretory ducts, which convey the fluid to the surface of the eye; (b) the lacrimal canaliculi, the lacrimal sac, and the nasolacrimal duct, by which the fluid is conveyed into the cavity of the nose. [WP,unvetted]." [Wikipedia:Lacrimal_apparatus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:55605
xref: GAID:901
xref: MA:0000274
xref: ncithesaurus:Lacrimal_Apparatus
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0001751
name: dentine
alt_id: UBERON:FMA_55628-MA_0002542-ZFA_0005143
def: "a tubular mineralized tissue[H&W]. In mammals - substance of tooth produced by odontoblasts; surrounds the pulp of the tooth and is subjacent to enamel and cement[FMA]. Mineralized collagen containing substance that forms the tooth structure[ZFA]. a calcified tissue of the body, and along with enamel, cementum, and pulp is one of the four major components of teeth[WP]." [Wikipedia:Dentin, ZFIN:curator]
comment: Dentine is found in the fossil record as early as the late Cambrian, in fish, where it may have had a role in electrochemical sensing of the environment as well as assisting in defense[WP]. H&W describe a continuum atubular - meta/orthodentine - mesi/semidentine - cement and without cementoblasts. TODO - odontoid tissue
subset: uberon_slim
synonym: "dentin" EXACT []
synonym: "dentine of tooth" EXACT []
synonym: "predentin" NARROW [GO:0070468]
xref: BTO:0003453
xref: FMA:55628
xref: GAID:1272
xref: MA:0002542
xref: ncithesaurus:Dentin
xref: TAO:0005143
xref: ZFA:0005143
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004755 ! skeletal tissue
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: develops_from UBERON:0002342 ! neural crest
[Term]
id: UBERON:0001752
name: enamel
alt_id: UBERON:FMA_55629-MA_0002543-ZFA_0005142
def: "A dentine-like hypermineralized substance that covers the tooth tip. Enamel's primary mineral is hydroxylapatite, which is a crystalline calcium phosphate. Unlike dentin and bone, enamel does not contain collagen. Instead, it has two unique classes of proteins called amelogenins and enamelins[WP]." [Wikipedia:Enamel, ZFIN:curator]
comment: Tooth enamel is also found in the dermal denticles of sharks UBERON:0000041. For the most part, research has shown that formation in animals is almost identical to formation in humans. The enamel organ, including the dental papilla, and ameloblasts function similarly.[53] The variations of enamel that are present are infrequent but sometimes important. Differences exist, certainly, in the morphology, number, and types of teeth among animals. H&W - highly mineralized, hard, prismatic, avascular outer layer of vertebrate teeth and some scales. Enamel is unique in being the only noncollagenous mineralized vertebrate skeletal tissue (Diekwisch, 2002). The enamel proteins amelogenin, enamelin, tuftelin, MMP-20, and EMSP-1 form a highly conserved family of matrix proteins (Satchell et al., 2002). Like dentine, enamel is both odontogenic and skeletogenic; enamel covers teeth and dermal skeletal tissues. Because of its very high mineral content, enamel is much more resistant to wear than dentine; some 96% of mammalian enamel is inorganic, and only 0.5% organic. // TODO - split enamel and enameloid
subset: uberon_slim
synonym: "enamel of tooth" EXACT []
synonym: "enameloid" EXACT []
synonym: "tooth enamel" EXACT []
xref: BTO:0001844
xref: FMA:55629
xref: MA:0002543
xref: ncithesaurus:Enamel
xref: TAO:0005142
xref: ZFA:0005142
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004755 ! skeletal tissue
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: develops_from UBERON:0003104 ! mesenchyme
[Term]
id: UBERON:0001753
name: cementum
alt_id: UBERON:FMA_55630-MA_0002541
def: "A bone-like mineralized tissue secreted by cementoblasts on the surface of root dentine or, in some animals, crown enamel[Diekwisch 2001]. Substance of tooth produced by cementoblasts; surrounds the dentine of the root of the tooth[FMA]. a specialized calcified substance covering the root of a tooth. Cementum is excreted by cells called cementoblasts within the root of the tooth and is thickest at the root apex. Its coloration is yellowish and it is softer than enamel and dentin due to being less mineralized[WP]." [Wikipedia:Cementum]
comment: Cementum, the supporting tissue that anchors mammalian and crocodylian teeth into their sockets, differs among species and can have features of dentine, of bone, and of calcified cartilage, as well as unique features. Cementum is deposited by cementoblasts onto existing dentine. As in bone and dentine, cementoblasts produce an organic matrix, the main constituent of which is collagen type I (Bosshardt, 2005), but cementum, dentine, and bone also share a number of important noncollagenous matrix components such as osteopontin, osteocalcin, bone sialoprotein, a2-HS- glycoprotein, dentine matrix protein, dentine sialoprotein, and den- tine phosphoprotein (McKee et al., 1996; Bosshardt, 2005). it has been argued that in all rodents and ruminants, cementum is a form of calcified cartilage[H&W]
synonym: "cement" EXACT []
synonym: "cement of tooth" EXACT []
synonym: "cementum" EXACT []
synonym: "cementum of tooth" EXACT []
xref: FMA:55630
xref: MA:0002541
xref: ncithesaurus:Cementum
is_a: UBERON:0001973 ! substance of tooth
[Term]
id: UBERON:0001754
name: dental pulp
alt_id: UBERON:FMA_55631-MA_0001599
def: "the part in the center of a tooth made up of living soft tissue and cells called odontoblasts[WP]." [Wikipedia:Dental_pulp]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pulp of tooth" EXACT []
xref: BTO:0000339
xref: FMA:55631
xref: GAID:1270
xref: HOG:0001469
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Tooth_Section.svg/200px-Tooth_Section.svg.png
xref: MA:0001599
xref: ncithesaurus:Dental_Pulp
xref: ZFA:0005141
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0001755
name: stylohyal
alt_id: UBERON:FMA_56472-ZFA_0001511
def: "The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms." [ZFIN:curator]
comment: TODO - check
synonym: "distal part of styloid process" EXACT []
synonym: "interhyal bone" RELATED []
synonym: "interhyal cartilage" EXACT []
xref: FMA:56472
xref: TAO:0001511
xref: ZFA:0001511
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0001756
name: middle ear
alt_id: UBERON:FMA_56513-MA_0000253-MIAA_0000146-XAO_0000191
def: "The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window)[GO]." [GO:0042474, Wikipedia:Middle_ear]
subset: uberon_slim
xref: BTO:0002099
xref: EHDAA:5693
xref: EHDAA2:0001181
xref: FMA:56513
xref: GAID:165
xref: HOG:0000312
xref: MA:0000253
xref: MAT:0000146
xref: MIAA:0000146
xref: ncithesaurus:Middle_Ear
xref: NIF_GrossAnatomy:birnlex_1695
xref: OpenCyc:Mx4rvbw1j5wpEbGdrcN5Y29ycA
xref: XAO:0000191
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001690 ! ear
[Term]
id: UBERON:0001757
name: pinna
alt_id: UBERON:FMA_56580-MA_0000259
def: "Visible part of the ear that resides outside of the head. The purpose of the pinna is to collect sound. It does so by acting as a funnel, amplifying the sound and directing it to the ear canal. While reflecting from the pinna, sound also goes through a filtering process which adds directional information to the sound (see sound localization, head-related transfer function, pinna notch). The filtering effect of the human pinna preferentially selects sounds in the frequency range of human speech. In various species, the pinna can also signal mood and radiate heat." [Wikipedia:Pinna_(anatomy)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "auricle" EXACT []
synonym: "auricle of ear" EXACT []
synonym: "auricle of external ear" EXACT []
synonym: "auricula" EXACT [Wikipedia:Auricula]
synonym: "auricula (auris externa)" EXACT []
synonym: "pinna of ear" EXACT []
synonym: "pinnae" RELATED PLURAL []
xref: EHDAA2:0001467
xref: FMA:56580
xref: galen:Auricle
xref: HOG:0000460
xref: MA:0000259
xref: ncithesaurus:Auricle
xref: OpenCyc:Mx4rvs_VC5wpEbGdrcN5Y29ycA
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001691 ! external ear
[Term]
id: UBERON:0001758
name: periodontium
alt_id: UBERON:FMA_56665-MA_0002467
def: "Skeletal ligament (organ) that connects a tooth to the maxilla or mandible." [Wikipedia:Periodontium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "periodontal ligament" EXACT []
synonym: "periodontal membrane" RELATED []
xref: BTO:0001020
xref: BTO:0001021
xref: FMA:56665
xref: GAID:1259
xref: GAID:216
xref: MA:0002467
xref: ncithesaurus:Periodontium
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0001759
name: vagus nerve
alt_id: UBERON:FMA_5731-MA_0001106-XAO_0003097-ZFA_0000453
def: "Cranial nerve that branches into the lateral (to body sense organs) and the intestino-accessorial (to the skin, muscles of shoulder, hyoid, larynx, gut, lungs, and heart)." [ISBN:0471209627, Wikipedia:Vagus_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CN-X" RELATED []
synonym: "cranial nerve X" RELATED []
synonym: "tenth cranial nerve" EXACT []
synonym: "vagal nerve" RELATED []
synonym: "vagus" EXACT []
synonym: "Vagus nerve [X]" EXACT []
synonym: "vagus nerve tree" EXACT []
synonym: "vagus x nerve" EXACT []
xref: BTO:0003472
xref: EFO:0002549
xref: FMA:5731
xref: GAID:721
xref: galen:VagusNerve
xref: HOG:0000737
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray791.png/200px-Gray791.png
xref: MA:0001106
xref: ncithesaurus:Vagus_Nerve
xref: NIF_GrossAnatomy:birnlex_801
xref: OpenCyc:Mx4rviHk2ZwpEbGdrcN5Y29ycA
xref: TAO:0000453
xref: XAO:0003097
xref: ZFA:0000453
is_a: UBERON:0001785 ! cranial nerve
relationship: part_of UBERON:0001033 ! gustatory system
[Term]
id: UBERON:0001760
name: frontal sinus
alt_id: UBERON:FMA_57417-MA_0001793
def: "Sinuses are mucosa-lined airspaces within the bones of the face and skull. The frontal sinuses, situated behind the superciliary arches, are absent at birth, but are generally fairly well developed between the seventh and eighth years, only reaching their full size after puberty. The frontal bone is membranous at birth and there is rarely more than a recess until the bone tissue starts to ossify about age two. Consequently this structure does not show on radiographs before that time. Frontal sinuses are rarely symmetrical and the septum between them frequently deviates to one or other side of the middle line. Sinus development begins in the womb, but only the maxillary and ethmoid sinuses are present at birth. Approximately 5% of people have absent frontal sinuses. Their average measurements are as follows: height 28 mm, breadth 24 mm, depth 20 mm, creating a space of 6-7 ml. Each opens into the anterior part of the corresponding middle meatus of the nose through the frontonasal duct which traverses the anterior part of the labyrinth of the ethmoid. These structures then open into the hiatus semilunaris in the middle meatus. The mucous membrane in this sinus is innervated by the supraorbital nerve, which carries the postganglionic parasympathetic nerve fibers for mucous secretion from the facial nerve and supplied by the supraorbital artery and anterior ethmoidal artery. Through its copious mucus production, the sinus is an essential part of the immune defense/air filtration carried out by the nose. Nasal and sinal mucosae are ciliated and move mucus to the choanae and finally to the stomach. The thick upper layers of nasal mucus trap bacteria and small particles in tissue abundantly provided with immune cells, antibodies, and antibacterial proteins. The layers beneath are thinner and provide a substrate in which the cilia are able to beat and move the upper layer with its debris through the ostia toward the choanae. [WP,unvetted]." [Wikipedia:Frontal_sinus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:57417
xref: GAID:357
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Nnh_front.svg/200px-Nnh_front.svg.png
xref: MA:0001793
xref: ncithesaurus:Frontal_Sinus
xref: OpenCyc:Mx4rvqMUR5wpEbGdrcN5Y29ycA
is_a: UBERON:0001825 ! paranasal sinus
[Term]
id: UBERON:0001761
name: foramen caecum
alt_id: UBERON:FMA_57443-MA_0000725
def: "." [Wikipedia:Foramen_caecum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:2150
xref: EHDAA:2977
xref: EHDAA2:0000550
xref: FMA:57443
xref: HOG:0000826
xref: MA:0000725
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0001762
name: nasal concha
alt_id: UBERON:FMA_57456-MA_0000286
def: "In anatomy, a nasal concha (or turbinate) is a long, narrow and curled bone shelf (shaped like an elongated sea-shell) which protrudes into the breathing passage of the nose. Turbinate bone refers to any of the scrolled spongy bones of the nasal passages in vertebrates. In humans, the turbinates divide the nasal airway into three groove-like air passages –and are responsible for forcing inhaled air to flow in a steady, regular pattern around the largest possible surface of cilia and climate controlling tissue. [WP,unvetted]." [Wikipedia:Nasal_concha]
comment: Note that FMA considers nasal concha and nasal concha of ethmoid bone to be synonymous. We disambiguate these here
subset: uberon_slim
synonym: "concha" RELATED [EMAPA:25093]
synonym: "nasal turbinate" EXACT []
synonym: "turbinate" EXACT []
synonym: "turbinate bone" EXACT [EMAPA:25093]
xref: EMAPA:25093
xref: GAID:224
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray153.png/200px-Gray153.png
xref: MA:0000286
xref: ncithesaurus:Nasal_Turbinate
xref: OpenCyc:Mx4rv07bVJwpEbGdrcN5Y29ycA
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0005913 ! zone of bone organ
relationship: part_of UBERON:0001707 ! nasal cavity
[Term]
id: UBERON:0001763
name: dental papilla
alt_id: UBERON:FMA_57662-MA_0001598-ZFA_0005140
def: "Tissue of the developing tooth. It is composed of pre-odontoblast and undiffentiated mesnchyme cells and connects to the basal lamina." [Wikipedia:Dental_papilla, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pharyngeal tooth mesenchyme" RELATED []
synonym: "tooth mesenchyme" RELATED []
xref: BTO:0001839
xref: FMA:57662
xref: GAID:1277
xref: HOG:0001465
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray1011.png/200px-Gray1011.png
xref: MA:0001598
xref: TAO:0005140
xref: ZFA:0005140
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0001828 ! gingiva
[Term]
id: UBERON:0001764
name: maxillary sinus
alt_id: UBERON:FMA_57715-MA_0001794
def: "The maxillary sinus (or Antrum of Highmore) is the largest of the paranasal sinuses, and is pyramidal in shape. [WP,unvetted]." [Wikipedia:Maxillary_sinus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "antrum of highmore" EXACT []
xref: FMA:57715
xref: GAID:358
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Gray1199.png/200px-Gray1199.png
xref: MA:0001794
xref: ncithesaurus:Maxillary_Sinus
xref: OpenCyc:Mx4rvp2ZWJwpEbGdrcN5Y29ycA
is_a: UBERON:0001825 ! paranasal sinus
[Term]
id: UBERON:0001765
name: lactiferous duct
alt_id: UBERON:FMA_58006-MA_0000791
def: "Epithelial tube that transports milk[GO]." [GO:0060603, Wikipedia:Lactiferous_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "mammary duct" EXACT [GO:0060603]
synonym: "mammary gland duct" EXACT []
xref: BTO:0002845
xref: FMA:58006
xref: MA:0000791
xref: ncithesaurus:Lactiferous_Duct
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0001766
name: anterior chamber of eyeball
alt_id: UBERON:FMA_58078-MA_0000262
def: "the fluid-filled space inside the eye between the iris and the cornea's innermost surface, the endothelium.[1] Aqueous humor is the fluid that fills the anterior chamber. Hyphema and glaucoma are two main pathologies in this area. In hyphema, blood fills the anterior chamber. In glaucoma, blockage of the canal of Schlemm prevents the normal outflow of aqueous humor, resulting in accumulation of fluid, increased intraocular pressure, and eventually blindness." [Wikipedia:Anterior_chamber_of_eyeball]
comment: This class was created automatically from a combination of ontologies
synonym: "anterior chamber" EXACT [HP:0000593, MP:0010709]
synonym: "anterior chamber of eye" EXACT []
synonym: "camera anterior" EXACT []
synonym: "eye anterior chamber" EXACT []
xref: EHDAA:9033
xref: EHDAA2:0000129
xref: FMA:58078
xref: GAID:889
xref: HOG:0001431
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0000262
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
[Term]
id: UBERON:0001767
name: posterior chamber of eyeball
alt_id: UBERON:FMA_58080-MA_0002460
def: "a narrow chink behind the peripheral part of the iris of the lens, and in front of the suspensory ligament of the lens and the ciliary processes the Posterior Chamber consists of small space directly posterior of the Iris but anterior to the lens." [Wikipedia:Posterior_chamber_of_eyeball]
comment: The posterior chamber should not be confused with vitreous chamber.
synonym: "camera posterior" EXACT []
synonym: "eye posterior chamber" EXACT []
synonym: "posterior chamber of eye" EXACT []
xref: FMA:58080
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png
xref: MA:0002460
xref: OpenCyc:Mx4rvnYe8pwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
[Term]
id: UBERON:0001768
name: vascular layer of eyeball
alt_id: UBERON:FMA_58103-MA_0002480
def: "pigmented middle of the three concentric layers that make up an eye[WP]. The pigmented vascular coat of the eyeball, consisting of the CHOROID; CILIARY BODY; and IRIS, which are continuous with each other. (Cline et al., Dictionary of Visual Science, 4th ed)[GAID]." [Wikipedia:Uvea]
comment: TODO - check child terms, isa vs partof
subset: uberon_slim
synonym: "tunica vasculosa of eyeball" EXACT []
synonym: "uvea" EXACT []
synonym: "uveal tract" EXACT []
xref: FMA:58103
xref: GAID:912
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Gray869.png/200px-Gray869.png
xref: MA:0002480
xref: ncithesaurus:Uvea
is_a: UBERON:0002049 ! vasculature
is_a: UBERON:0002203 ! implied link automatically realized ! vasculature of eye
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
[Term]
id: UBERON:0001769
name: iris
alt_id: UBERON:FMA_58235-MA_0000273-XAO_0000185-ZFA_0001238
def: "a membrane in the eye, responsible for controlling the amount of light reaching the retina. The iris consists of pigmented fibrovascular tissue known as a stroma. It is the most forward portion of the eye and the only one seen on superficial inspection. The stroma connects a sphincter muscle (sphincter pupillae), which contracts the pupil, and a set of dilator muscles (dilator pupillae) which open it. The back surface is covered by a heavily pigmented epithelial layer two cells thick (the iris pigment epithelium), but the front surface has no epithelium. The high pigment content blocks light from passing through the iris and restricts it to the pupil. The outer edge of the iris, known as the root, is attached to the sclera and the anterior ciliary body. The iris and ciliary body together are known as the anterior uvea. Just in front of the root of the iris is the region through which the aqueous humour constantly drains out of the eye, with the result that diseases of the iris often have important effects on intraocular pressure, and indirectly on vision. Depending on the amount of light, the iris makes the pupil larger or smaller." [Wikipedia:Iris_(anatomy)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior uvea" RELATED []
xref: BTO:0000653
xref: FMA:58235
xref: GAID:917
xref: HOG:0000101
xref: MA:0000273
xref: ncithesaurus:Iris
xref: OpenCyc:Mx4rvVjbppwpEbGdrcN5Y29ycA
xref: TAO:0001238
xref: XAO:0000185
xref: ZFA:0001238
is_a: UBERON:0001768 ! vascular layer of eyeball
is_a: UBERON:0004118 ! implied link automatically realized ! vasculature of iris
relationship: develops_from UBERON:0003072 ! optic cup
[Term]
id: UBERON:0001770
name: lacrimal canaliculus
alt_id: UBERON:FMA_58245-MA_0001294
def: "The lacrimal canaliculi, also known as the lacrimal canals or lacrimal ducts, are the small channels in each eyelid that commence at minute orifices, termed puncta lacrimalia, on the summits of the papillae lacrimales, seen on the margins of the lids at the lateral extremity of the lacus lacrimalis. The superior duct, the smaller and shorter of the two, at first ascends, and then bends at an acute angle, and passes medialward and downward to the lacrimal sac. The inferior duct at first descends, and then runs almost horizontally to the lacrimal sac. At the angles they are dilated into ampullæ. Microscopically, they are lined by nonkeratinizing stratified squamous epithelium surrounded by fibrous tissue. Outside the latter is a layer of striped muscle, continuous with the lacrimal part of the Orbicularis oculi; at the base of each lacrimal papilla the muscular fibers are circularly arranged and form a kind of sphincter. [WP,unvetted]." [Wikipedia:Lacrimal_canaliculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:58245
xref: MA:0001294
xref: ncithesaurus:Lacrimal_Canaliculus
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001850 ! lacrimal duct
[Term]
id: UBERON:0001771
name: pupil
alt_id: UBERON:FMA_58252-MA_0001292-XAO_0000283-ZFA_0001283
def: "sphere that is located in the center of the iris of the eye and that controls the amount of light that enters the eye." [Wikipedia:Pupil]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:58252
xref: GAID:918
xref: HOG:0000116
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Eye_iris.jpg/200px-Eye_iris.jpg
xref: MA:0001292
xref: ncithesaurus:Pupil
xref: OpenCyc:Mx4rvViBr5wpEbGdrcN5Y29ycA
xref: TAO:0001283
xref: XAO:0000283
xref: ZFA:0001283
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0001772
name: corneal epithelium
alt_id: UBERON:FMA_58263-MA_0001243
def: "The corneal epithelium (epithelium corneæ anterior layer) is made up of epithelial tissue and covers the front of the cornea. It consists of several layers of cells. The cells of the deepest layer are columnar; then follow two or three layers of polyhedral cells, the majority of which are prickle cells similar to those found in the stratum mucosum of the cuticle. Lastly, there are three or four layers of squamous cells, with flattened nuclei. [WP,unvetted]." [Wikipedia:Corneal_epithelium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior corneal epithelium" EXACT []
synonym: "cornea epithelial tissue" EXACT [OBOL:automatic]
synonym: "cornea epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cornea" EXACT [OBOL:automatic]
synonym: "epithelium anterius (cornea)" EXACT []
synonym: "epithelium of cornea" EXACT []
synonym: "external epithelium of cornea" EXACT []
xref: BTO:0000287
xref: EFO:0001917
xref: FMA:58263
xref: GAID:895
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray871.png/200px-Gray871.png
xref: MA:0001243
xref: ncithesaurus:Corneal_Epithelium
xref: ZFA:0001683
is_a: UBERON:0000488 ! atypical epithelium
is_a: UBERON:0001803 ! implied link automatically realized ! epithelium of lens
relationship: part_of UBERON:0000964
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000964 ! cornea
relationship: part_of UBERON:0000964 ! cornea
[Term]
id: UBERON:0001773
name: sclera
alt_id: UBERON:FMA_58269-MA_0000280-XAO_0000183
def: "The sclera, also known as the white part of the eye, is the opaque (usually white, though certain animals, such as horses and lizards, can have black sclera), fibrous, protective, outer layer of the eye containing collagen and elastic fiber. It is derived from the neural crest. In children, it is thinner and shows some of the underlying pigment, appearing slightly blue. In the elderly, however, fatty deposits on the sclera can make it appear slightly yellow. The sclera forms the posterior five sixths of the connective tissue coat of the globe. It is continuous with the dura mater and the cornea, and maintains the shape of the globe, offering resistance to internal and external forces, and provides an attachment for the extraocular muscle insertions. The sclera is perforated by plenty of nerves and vessels passing through the posterior scleral foramen, the hole that is formed by the optic nerve. At the optic disk the outer two-thirds of the sclera continues with the dura mater (outer coat of the brain) via the dural sheath of the optic nerve. The inner third joins with some choroidal tissue to form a plate (lamina cribrosa) across the optic nerve with perforations through which the optic fibers (fasciculi). The thickness of the sclera varies from 1mm at the posterior pole to 0.3 mm just behind the rectus muscle insertions. The sclera's blood vessels are mainly on the surface, and together with the conjunctiva (which lies on top) This is a thin layer covering the sclera. Along with the vessels of the conjunctiva, those of the sclera renders the inflamed eye bright red. [WP,unvetted]." [Wikipedia:Sclera]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001606
xref: FMA:58269
xref: GAID:911
xref: HOG:0001274
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0000280
xref: ncithesaurus:Sclera
xref: OpenCyc:Mx4rv7yR55wpEbGdrcN5Y29ycA
xref: XAO:0000183
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0001774
name: muscle of trunk
alt_id: UBERON:FMA_58274-MA_0000514
def: "Muscle organ which is a part of the trunk. Examples: external intercostal muscle, external oblique, levator ani." []
comment: TODO - check muscle organ vs musculature
subset: uberon_slim
synonym: "muscle organ of torso" EXACT [OBOL:automatic]
synonym: "muscle organ of trunk" EXACT [OBOL:automatic]
synonym: "torso muscle organ" EXACT [OBOL:automatic]
synonym: "trunk muscle" EXACT []
synonym: "trunk muscle organ" EXACT [OBOL:automatic]
synonym: "trunk musculature" EXACT []
xref: AAO:0000611
xref: FMA:58274
xref: MA:0000514
xref: XAO:0003230
xref: ZFA:0000473
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0005177 ! implied link automatically realized ! trunk organ
relationship: part_of UBERON:0002100
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0001775
name: ciliary body
alt_id: UBERON:FMA_58295-MA_0000264-XAO_0000186-ZFA_0001203
def: "circumferential tissue inside the eye composed of the ciliary muscle and ciliary processes." [Wikipedia:Ciliary_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior uvea" RELATED []
xref: BTO:0000260
xref: FMA:58295
xref: GAID:916
xref: HOG:0000102
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0000264
xref: ncithesaurus:Ciliary_Body
xref: TAO:0001203
xref: XAO:0000186
xref: ZFA:0001203
is_a: UBERON:0001768 ! vascular layer of eyeball
[Term]
id: UBERON:0001776
name: choroid
alt_id: UBERON:FMA_58298-MA_0000263
def: "vascular layer containing connective tissue, of the eye lying between the retina and the sclera. In humans its thickness is about 0.5 mm. The choroid provides oxygen and nourishment to the outer layers of the retina [1]. Along with the ciliary body and iris, the choroid forms the uveal tract[WP]." [Wikipedia:Choroid]
subset: uberon_slim
synonym: "choroid coat" EXACT [Wikipedia:Choroid]
synonym: "choroidea" EXACT [Wikipedia:Choroid]
synonym: "optic choroid" EXACT [ZFA:0005229]
synonym: "posterior uvea" EXACT [Wikipedia:Uvea#Regions]
xref: BTO:0001829
xref: FMA:58298
xref: GAID:913
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0000263
xref: ncithesaurus:Choroid
xref: ZFA:0005229
is_a: UBERON:0001768 ! vascular layer of eyeball
relationship: adjacent_to UBERON:0000966 ! retina
relationship: adjacent_to UBERON:0001773 ! sclera
relationship: part_of UBERON:0001768 ! vascular layer of eyeball
[Term]
id: UBERON:0001777
name: substantia propria of cornea
alt_id: UBERON:FMA_58306-MA_0001245
def: "The substantia propria (or stroma of cornea) is fibrous, tough, unyielding, and perfectly transparent. It is composed of about 200 flattened lamellæ (plates of collagen fibrils), superimposed one on another. They are each about 1.5-2.5 micrometres in thickness. These fibrils run at different angles between the limbi. Fibres of the layers frequently interweave, the anterior lamellæ interweaving more than posterior lamellæ. The fibres of each lamella are parallel with one another, but at right angles to those of adjacent lamellæ. The lamellæ are produced by keratocytes (corneal corpuscles), which occupy about 10% of the substantia propria. These lamellæ are made up of bundles of modified connective tissue, the fibres of which are directly continuous with those of the sclera. More collagen fibres run in a temporal-nasal direction than run in the superior-inferior direction. This is often ignored by corneal transplant surgeons, leading to poor corneal mechanical strength in corneal transplant patients. [WP,unvetted]." [Wikipedia:Corneal_stroma]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "corneal stroma" EXACT []
synonym: "stroma of cornea" EXACT []
synonym: "substantia propria" RELATED []
xref: EFO:0002514
xref: FMA:58306
xref: GAID:893
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray871.png/200px-Gray871.png
xref: MA:0001245
xref: ncithesaurus:Corneal_Stroma
xref: ZFA:0001685
is_a: UBERON:0003891 ! stroma
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000964 ! cornea
[Term]
id: UBERON:0001778
name: epithelium of ciliary body
alt_id: UBERON:FMA_58464-MA_0001238
def: "An epithelium that is part of a ciliary body [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "ciliary body epithelial tissue" EXACT [OBOL:automatic]
synonym: "ciliary body epithelium" EXACT []
synonym: "ciliary epithelium" EXACT []
synonym: "epithelial tissue of ciliary body" EXACT [OBOL:automatic]
xref: BTO:0001770
xref: FMA:58464
xref: MA:0001238
xref: ncithesaurus:Ciliary_Epithelium
is_a: UBERON:0000488 ! atypical epithelium
relationship: part_of UBERON:0001775
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001775 ! ciliary body
relationship: part_of UBERON:0001775 ! ciliary body
[Term]
id: UBERON:0001779
name: iris stroma
alt_id: UBERON:FMA_58526-MA_0002777
def: "the delicate vascular connective tissue that lies between the anterior surface of the iris and the pars iridica retinae." [http://www.drugs.com/dict/stroma-of-iris.html, Wikipedia:Iris_stroma]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "iridial stroma" EXACT []
synonym: "stroma of iris" EXACT []
xref: FMA:58526
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png
xref: MA:0002777
is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue
is_a: UBERON:0003891 ! stroma
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0001780
name: spinal nerve
alt_id: UBERON:FMA_5858-MA_0000233-XAO_0003101
def: "Neural tree (organ) which is directly continuous with the spinal cord. Examples: Fifth cervical spinal nerve, third lumbar spinal nerve." [Wikipedia:Spinal_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "backbone nerve" EXACT [OBOL:automatic]
synonym: "nerve of backbone" EXACT [OBOL:automatic]
synonym: "nerve of spinal column" EXACT [OBOL:automatic]
synonym: "nerve of spine" EXACT [OBOL:automatic]
synonym: "nerve of vertebral column" EXACT [OBOL:automatic]
synonym: "spinal column nerve" EXACT [OBOL:automatic]
synonym: "spinal nerve tree" EXACT []
synonym: "spine nerve" EXACT [OBOL:automatic]
synonym: "vertebral column nerve" EXACT [OBOL:automatic]
xref: BTO:0000870
xref: EHDAA2:0001898
xref: FMA:5858
xref: GAID:841
xref: HOG:0000824
xref: MA:0000233
xref: ncithesaurus:Spinal_Nerve
xref: OpenCyc:Mx4rwK_iFJwpEbGdrcN5Y29ycA
xref: XAO:0003101
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0003377 ! implied link automatically realized ! nerve of peripheral nervous system
relationship: continuous_with UBERON:0002240
intersection_of: UBERON:0001021 ! nerve
intersection_of: continuous_with UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0001781
name: layer of retina
alt_id: UBERON:FMA_58617-MA_0001319-XAO_0000266
def: "any of the layers that make up the retina." [MP:0003727]
comment: GO: the outer nuclear layer (ONL), which contains photoreceptor nuclei; the inner nuclear layer (INL), which contains amacrine, bipolar and horizontal cells; and the retinal ganglion cell (RGC) layer. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells. The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells. Spanning all layers of the retina are the radially oriented Mueller glia. // TODO check meaning of MA:0001318 retina lamina
synonym: "retina layer" EXACT []
synonym: "retina neuronal layer" EXACT [MP:0006069]
synonym: "retinal layer" EXACT []
synonym: "retinal neuronal layer" EXACT [MP:0006069]
xref: FMA:58617
xref: MA:0001318
xref: MA:0001319
xref: ncithesaurus:Retina_Layer
xref: XAO:0000266
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0001782
name: pigmented layer of retina
alt_id: UBERON:FMA_58627-MA_0000279-ZFA_0000144
def: "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup[ZFA]. the pigmented cell layer just outside the neurosensory retina that nourishes retinal visual cells, and is firmly attached to the underlying choroid and overlying retinal visual cells[WP]." [Wikipedia:Retinal_pigment_epithelium, ZFIN:curator]
subset: uberon_slim
synonym: "outer pigmented layer of retina" EXACT []
synonym: "pigment epithelium of retina" EXACT []
synonym: "pigmented epithelium" RELATED []
synonym: "pigmented retina" RELATED []
synonym: "pigmented retinal epithelium" EXACT []
synonym: "PRE" RELATED []
synonym: "retinal pigment epithelium" EXACT [Wikipedia:Retinal_pigment_epithelium]
synonym: "retinal pigmented epithelium" EXACT []
synonym: "retinal pigmented epithelium" EXACT [ZFA:0000144]
synonym: "RPE" RELATED []
synonym: "stratum pigmentosum (retina)" EXACT []
xref: BTO:0001177
xref: EHDAA:4765
xref: EHDAA2:0001465
xref: FMA:58627
xref: HOG:0000536
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray881.png/200px-Gray881.png
xref: MA:0000279
xref: ncithesaurus:Retinal_Pigment_Epithelium
xref: TAO:0000144
xref: XAO:0003217
xref: ZFA:0000144
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0001781 ! implied link automatically realized ! layer of retina
relationship: develops_from UBERON:0005424
intersection_of: UBERON:0001781 ! layer of retina
intersection_of: develops_from UBERON:0005424 ! presumptive retinal pigmented epithelium
relationship: adjacent_to UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001783
name: optic disc
alt_id: UBERON:FMA_58634-MA_0000278
def: "The optic disc or optic nerve head is the location where ganglion cell axons exit the eye to form the optic nerve. There are no light sensitive rods or cones to respond to a light stimulus at this point. This causes a break in the visual field called 'the blind spot' or the 'physiological blind spot'. The optic nerve head in a normal human eye carries from 1 to 1.2 million neurons from the eye towards the brain. [WP,unvetted]." [Wikipedia:Optic_disc]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EFO:0001974
xref: EHDAA:9077
xref: EHDAA2:0001307
xref: FMA:58634
xref: HOG:0000551
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Gray879.png/200px-Gray879.png
xref: MA:0000278
xref: ncithesaurus:Optic_Disc
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0001784
name: macula lutea
alt_id: UBERON:FMA_58637-MA_0001306-ZFA_0000386
comment: Obsoleted as it accidentally grouped macula and macula lutea
is_obsolete: true
consider: UBERON:0000053
consider: UBERON:0000054
[Term]
id: UBERON:0001785
name: cranial nerve
alt_id: UBERON:FMA_5865-MA_0000215-XAO_0003089-ZFA_0000641
def: "Neural tree organ which is continuous with the brain. Examples: Trochlear nerve, facial nerve[FMA]. // Any of the major paired nerves of the head region. // Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves." [Wikipedia:Cranial_nerve, XB:curator, ZFIN:curator]
comment: note not classified as nerve in FMA
subset: uberon_slim
synonym: "cranial nerves" RELATED []
synonym: "cranial neural tree organ" EXACT []
xref: AAO:0000108
xref: BTO:0001104
xref: EHDAA2:0000323
xref: FMA:5865
xref: GAID:802
xref: HOG:0000279
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Brain_human_normal_inferior_view_with_labels_en.svg/200px-Brain_human_normal_inferior_view_with_labels_en.svg.png
xref: MA:0000215
xref: ncithesaurus:Cranial_Nerve
xref: NIF_GrossAnatomy:birnlex_1623
xref: OpenCyc:Mx4rvWvJVpwpEbGdrcN5Y29ycA
xref: TAO:0000641
xref: XAO:0003089
xref: ZFA:0000641
is_a: UBERON:0001021 ! nerve
relationship: continuous_with UBERON:0000955
intersection_of: UBERON:0001021 ! nerve
intersection_of: continuous_with UBERON:0000955 ! brain
relationship: continuous_with UBERON:0000955 ! brain
[Term]
id: UBERON:0001786
name: fovea centralis
alt_id: UBERON:FMA_58658-MA_0001307
def: "a part of the eye, located in the center of the macula region of the retina. [1] [2] The fovea is responsible for sharp central vision (also called foveal vision). The fovea is surrounded by the parafovea belt, and the perifovea outer region:[2] the parafovea is the intermediate belt where the ganglion cell layer is composed of more than five rows of cells; as well as the highest density of cones; the perifovea is the outermost region where the ganglion cell layer contains two to four rows of cells, and is where visual acuity is below the optimum. The perifovea contains an even more diminished density of cones, having 12 per 100 micrometres versus 50 per 100 micrometres in the most central fovea. This, in turn, is surrounded by a larger peripheral area that delivers highly compressed information of low resolution. Approximately 50% of the nerve fibers in the optic nerve carry information from the fovea, while the other 50% carry information from the rest of the retina. The parafovea extends to a distance of 1¼ mm from the central fovea, and the perifovea is found 2¾ mm away from the fovea centralis[WP]." [Wikipedia:Fovea_centralis_in_macula]
comment: As an anatomical term, there are several foveae around the body, including in the head of the femur.(WP)
subset: uberon_slim
synonym: "fovea" EXACT []
synonym: "fovea centralis in macula" EXACT [Wikipedia:Fovea_centralis_in_macula]
xref: FMA:58658
xref: GAID:910
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0001307
xref: ncithesaurus:Fovea_Centralis
xref: NIF_GrossAnatomy:birnlex_2543
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000053 ! macula lutea
[Term]
id: UBERON:0001787
name: photoreceptor layer of retina
alt_id: UBERON:FMA_58680-MA_0001308
def: "The layer within the retina where the photoreceptor cell receptor segments reside." [Wikipedia:Layer_of_rods_and_cones, ZFA:0000143]
subset: uberon_slim
synonym: "layer of rods and cones" RELATED []
synonym: "retina photoreceptor layer" EXACT []
synonym: "stratum segmentorum externorum et internorum (retina)" EXACT []
xref: FMA:58680
xref: HOG:0001165
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray881.png/200px-Gray881.png
xref: MA:0001308
xref: XAO:0003215
xref: ZFA:0000143
is_a: UBERON:0001781 ! layer of retina
is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001788
name: outer limiting layer of retina
alt_id: UBERON:FMA_58683-MA_0001309
def: "the row of jucntional complexes between the plasma membranes of rod segments and the Muller glia cells; this barrier separates the layer of inner and outer segments of the rods and cones from the outer nuclear layer and forms a blood-retina barrier[MP]." [MP:0010236]
comment: TODO - check fish/frog
synonym: "external limiting lamina of retina" EXACT []
synonym: "external limiting membrane of retina" EXACT []
synonym: "outer limiting membrane" EXACT [XAO:0003224]
synonym: "outer limiting membrane of retina" EXACT []
synonym: "retina external limiting lamina" EXACT []
synonym: "retina outer limiting membrane" EXACT [MP:0010236]
synonym: "stratum limitans externum (retina)" EXACT []
xref: FMA:58683
xref: MA:0001309
xref: XAO:0003224
xref: ZFA:0001331
is_a: UBERON:0001781 ! layer of retina
[Term]
id: UBERON:0001789
name: outer nuclear layer of retina
alt_id: UBERON:FMA_58684-MA_0001315
def: "The layer within the retina where the photoreceptor cell bodies reside." [ZFA:0001464]
comment: This class was created automatically from a combination of ontologies
synonym: "ONL" NARROW []
synonym: "retina outer nuclear layer" EXACT []
synonym: "retinal outer nuclear layer" EXACT []
synonym: "stratum nucleare externum (retina)" EXACT []
xref: FMA:58684
xref: HOG:0001170
xref: MA:0001315
xref: XAO:0003219
xref: ZFA:0001464
is_a: UBERON:0001781 ! layer of retina
is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001790
name: outer plexiform layer of retina
alt_id: UBERON:FMA_58685-MA_0001316
def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells[ZFA]. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells[GO]." [ZFA:0001330]
comment: This class was created automatically from a combination of ontologies
synonym: "external plexiform layer" EXACT [BTO:0003174]
synonym: "OPL" NARROW []
synonym: "outer plexiform layer" EXACT [BTO:0003174]
synonym: "retina outer plexiform layer" EXACT []
synonym: "retinal outer plexiform layer" EXACT []
synonym: "stratum plexiforme externum" EXACT []
xref: BTO:0003174
xref: FMA:58685
xref: HOG:0001171
xref: MA:0001316
xref: NIF_GrossAnatomy:nlx_anat_20090403
xref: XAO:0003218
xref: ZFA:0001330
is_a: UBERON:0001781 ! layer of retina
is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer
relationship: part_of UBERON:0001793 ! nerve fiber layer of retina
[Term]
id: UBERON:0001791
name: inner nuclear layer of retina
alt_id: UBERON:FMA_58686-MA_0001311
def: "Layer of retina that contains amacrine, bipolar and horizontal cells." []
comment: This class was created automatically from a combination of ontologies
synonym: "INL" NARROW []
synonym: "retina inner nuclear layer" EXACT []
synonym: "retinal inner nuclear layer" EXACT []
synonym: "stratum nucleare internum" EXACT []
xref: FMA:58686
xref: HOG:0001167
xref: MA:0001311
xref: XAO:0003221
xref: ZFA:0000119
is_a: UBERON:0001781 ! layer of retina
is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001792
name: ganglionic layer of retina
alt_id: UBERON:FMA_58687-MA_0001310
def: "a layer of the retina that consists of retinal ganglion cells[WP]. innermost nuclear layer of the retina, which contains neurons that project axons through the optic nerve to the brain." [Wikipedia:Ganglion_cell_layer]
comment: Check exact synonyms in ZFA / XAO
subset: uberon_slim
synonym: "ganglion cell layer" EXACT []
synonym: "ganglionic cell layer of retina" EXACT []
synonym: "retina ganglion cell layer" EXACT []
synonym: "retina ganglion layer" RELATED []
synonym: "retinal ganglion cell layer" EXACT []
synonym: "retinal ganglion layer" RELATED [MP:0008510]
synonym: "RGC layer" EXACT []
synonym: "stratum ganglionicum (retina)" EXACT []
xref: BTO:0003398
xref: FMA:58687
xref: HOG:0001166
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray881.png/200px-Gray881.png
xref: MA:0001310
xref: ncithesaurus:Ganglion_Cell_Layer
xref: XAO:0003223
xref: ZFA:0000024
is_a: UBERON:0001781 ! layer of retina
is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001793
name: nerve fiber layer of retina
alt_id: UBERON:FMA_58688-MA_0001314
comment: This class was created automatically from a combination of ontologies
synonym: "layer of nerve fibers of retina" EXACT []
synonym: "layer of nerve fibres of retina" EXACT []
synonym: "retina nerve fiber layer" EXACT []
synonym: "stratum neurofibrarum (retina)" EXACT []
synonym: "stratum opticum of retina" EXACT []
xref: FMA:58688
xref: HOG:0001169
xref: MA:0001314
is_a: UBERON:0001781 ! layer of retina
is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer
relationship: has_part UBERON:0001021 ! nerve
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001794
name: inner limiting layer of retina
alt_id: UBERON:FMA_58689-MA_0001313
def: "the row of fused Muller cell processes and astrocytes that separates the retinal nerve fiber layer from the vitreous[MP]." [MP:0010235]
comment: TODO - check frog/fish
synonym: "inner limiting membrane" EXACT [XAO:0003222]
synonym: "inner limiting membrane of retina" EXACT []
synonym: "internal limiting lamina of retina" EXACT []
synonym: "internal limiting membrane of retina" EXACT []
synonym: "retina inner limiting membrane" EXACT [MP:0010235]
synonym: "retina internal limiting lamina" EXACT []
xref: FMA:58689
xref: MA:0001313
xref: XAO:0003222
xref: ZFA:0001029
is_a: UBERON:0001781 ! layer of retina
[Term]
id: UBERON:0001795
name: inner plexiform layer of retina
alt_id: UBERON:FMA_58704-MA_0001312
def: "The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells[GO]." [Wikipedia:Inner_plexiform_layer]
comment: BTO misspelling?
synonym: "inner plexiform layer" RELATED [BTO:0003175]
synonym: "IPL" NARROW []
synonym: "retina inner plexiform layer" EXACT []
synonym: "retinal inner plexiform layer" EXACT []
synonym: "stratum plexifome internum" RELATED [BTO:0003175]
synonym: "stratum plexiforme internum" EXACT []
xref: BTO:0003175
xref: FMA:58704
xref: HOG:0001168
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray881.png/200px-Gray881.png
xref: MA:0001312
xref: XAO:0003225
xref: ZFA:0001329
is_a: UBERON:0001781 ! layer of retina
is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer
relationship: adjacent_to UBERON:0001791
relationship: adjacent_to UBERON:0001792
intersection_of: UBERON:0001781 ! layer of retina
intersection_of: adjacent_to UBERON:0001791 ! inner nuclear layer of retina
intersection_of: adjacent_to UBERON:0001792 ! ganglionic layer of retina
relationship: adjacent_to UBERON:0001791 ! inner nuclear layer of retina
relationship: adjacent_to UBERON:0001792 ! ganglionic layer of retina
relationship: part_of UBERON:0001793 ! nerve fiber layer of retina
[Term]
id: UBERON:0001796
name: aqueous humor of eyeball
alt_id: UBERON:FMA_58819-MA_0001236
def: "Body substance in liquid state contained in the anterior and posterior chambers of the eyeball." [Wikipedia:Aqueous_humor]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "aqueous humor" EXACT []
synonym: "aqueous humour" EXACT []
xref: EHDAA:10196
xref: EHDAA2:0000139
xref: ENVO:02000024
xref: FMA:58819
xref: GAID:890
xref: HOG:0000548
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0001236
xref: ncithesaurus:Aqueous_Humor
xref: OpenCyc:Mx4rvdGd-5wpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001766 ! anterior chamber of eyeball
[Term]
id: UBERON:0001797
name: vitreous humor
alt_id: UBERON:FMA_58822-MA_0001286
def: "Body substance of semisolid state which constitutes the vitreous body of the eye." [Wikipedia:Vitreous_humor]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "humor vitreous" EXACT []
synonym: "vitreous humour" RELATED []
xref: BTO:0001451
xref: ENVO:02000032
xref: FMA:58822
xref: HOG:0000795
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0001286
xref: ncithesaurus:Vitreous_Humor
xref: OpenCyc:Mx4rv7ZIfZwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001798 ! vitreous body
[Term]
id: UBERON:0001798
name: vitreous body
alt_id: UBERON:FMA_58827-MA_0002462
def: "Mucoid tissue in the vitreous chamber of the eyeball. Examples: There are only two instances, right and left vitreous bodies." [Wikipedia:Vitreous_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: ENVO:02000032
xref: FMA:58827
xref: GAID:919
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0002462
xref: ncithesaurus:Vitreous_Body
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0001799 ! vitreous chamber of eyeball
[Term]
id: UBERON:0001799
name: vitreous chamber of eyeball
alt_id: UBERON:FMA_58848-MA_0002461
def: "The posterior chamber is a narrow chink behind the peripheral part of the iris of the human eye, and in front of the suspensory ligament of the lens and the ciliary processes the Posterior Chamber consists of small space directly posterior of the Iris but anterior to the lens. [WP,unvetted]." [Wikipedia:Vitreous_chamber]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "camera postrema" EXACT []
synonym: "camera vitrea" EXACT []
synonym: "camera vitrea bulbi" EXACT []
synonym: "postremal chamber" EXACT []
synonym: "postremal chamber of eyeball" EXACT []
synonym: "vitreous chamber" EXACT []
xref: FMA:58848
xref: MA:0002461
xref: ncithesaurus:Vitreous_Chamber
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001802 ! posterior segment of eyeball
[Term]
id: UBERON:0001800
name: sensory ganglion
alt_id: UBERON:FMA_5885-MA_0002566
def: "the clusters of neurons in the somatic peripheral nervous system which contain the cell bodies of sensory nerve axons, interneurons and non-neuronal supporting cells." [MP:0000960]
comment: This class was created automatically from a combination of ontologies
synonym: "ganglion sensorium" EXACT []
xref: FMA:5885
xref: MA:0002566
xref: ncithesaurus:Sensory_Ganglion
is_a: UBERON:0000045 ! ganglion
[Term]
id: UBERON:0001801
name: anterior segment of eyeball
alt_id: UBERON:FMA_58865-MA_0002484
def: "The anterior segment is the front third of the eye that includes the structures in front of the vitreous humour: the cornea, iris, ciliary body, and lens. Within the anterior segment are two fluid-filled spaces: the anterior chamber between the posterior surface of the cornea (i.e. the corneal endothelium) and the iris; the posterior chamber between the iris and the front face of the vitreous. Aqueous humor fills these spaces within the anterior segment and provides nutrients to the surrounding structures." [Wikipedia:Anterior_segment_of_eyeball]
comment: This class was created automatically from a combination of ontologies
synonym: "anterior segment of eye" EXACT []
synonym: "anterior segment of the eye" EXACT []
synonym: "eye anterior segment" EXACT []
synonym: "segmentum anterius (bulbus oculi)" EXACT []
xref: FMA:58865
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Cataract_in_human_eye.png/200px-Cataract_in_human_eye.png
xref: MA:0002484
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0001802
name: posterior segment of eyeball
alt_id: UBERON:FMA_58868-MA_0002485
def: "The posterior segment is the back two-thirds of the eye that includes the anterior hyaloid membrane and all structures behind it: the vitreous humor, retina, choroid, and optic nerve. On the anterior side of the lens is the aqueous humour which is bounded on all sides by the lens, ciliary body, suspensory ligaments, and by the cornea. It lets light through without refraction, helps maintain the shape of the eye and suspends the delicate lens. In some animals, the retina contains a reflective layer (the tapetum lucidum) which increases the amount of light each photosensitive cell perceives, allowing the animal to see better under low light conditions." [Wikipedia:Posterior_segment_of_eyeball]
comment: This class was created automatically from a combination of ontologies
synonym: "eye posterior segment" EXACT []
synonym: "posterior segment of eye" EXACT []
synonym: "posterior segment of the eye" EXACT []
synonym: "segmentum posterius (bulbus oculi)" EXACT []
xref: FMA:58868
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: MA:0002485
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0001803
name: epithelium of lens
alt_id: UBERON:FMA_58871-MA_0001301-ZFA_0001326
def: "The cells of the lens epithelium regulate most of the homeostatic functions of the lens.[6] As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions." [Wikipedia:Lens_(anatomy)#Lens_Epithelium]
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of eye lens" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lens" EXACT [OBOL:automatic]
synonym: "epithelium of eye lens" EXACT [OBOL:automatic]
synonym: "eye lens epithelial tissue" EXACT [OBOL:automatic]
synonym: "eye lens epithelium" EXACT [OBOL:automatic]
synonym: "lens epithelial tissue" EXACT [OBOL:automatic]
synonym: "lens epithelium" EXACT []
xref: BTO:0001873
xref: FMA:58871
xref: MA:0001301
xref: TAO:0001326
xref: ZFA:0001326
is_a: UBERON:0000484 ! simple cuboidal epithelium
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000965
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000965 ! lens
relationship: part_of UBERON:0000965 ! lens
[Term]
id: UBERON:0001804
name: capsule of lens
alt_id: UBERON:FMA_58881-MA_0001300
def: "a smooth, transparent basement membrane that completely surrounds the lens. It is synthesized by the lens epithelium and its main components are Type IV collagen and sulfated glycosaminoglycans (GAGs)." [Wikipedia:Lens_(anatomy)#Lens_capsule, Wikipedia:Lens_capsule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lens capsule" EXACT []
xref: EHDAA2:0000977
xref: FMA:58881
xref: HOG:0000550
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png
xref: MA:0001300
xref: ncithesaurus:Lens_Capsule
is_a: UBERON:0003893 ! capsule
relationship: surrounds UBERON:0000965
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0000965 ! lens
relationship: surrounds UBERON:0000965 ! lens
[Term]
id: UBERON:0001805
name: autonomic ganglion
alt_id: UBERON:FMA_5889-MA_0000220
def: "ganglion that has dendrites that form a junction between autonomic nerves originating from the central nervous system and autonomic nerves innervating their target organs in the periphery. There are two subtypes, sympathetic ganglion and parasympathetic ganglion." [Wikipedia:Autonomic_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "autonomic nervous system ganglion" EXACT [OBOL:automatic]
synonym: "ganglion of autonomic nervous system" EXACT [OBOL:automatic]
synonym: "ganglion of visceral nervous system" EXACT [OBOL:automatic]
synonym: "visceral nervous system ganglion" EXACT [OBOL:automatic]
xref: FMA:5889
xref: MA:0000220
xref: ncithesaurus:Autonomic_Ganglion
is_a: UBERON:0000045 ! ganglion
is_a: UBERON:0003338 ! implied link automatically realized ! ganglion of peripheral nervous system
relationship: part_of UBERON:0002410
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0002410 ! autonomic nervous system
relationship: part_of UBERON:0002410 ! autonomic nervous system
[Term]
id: UBERON:0001806
name: sympathetic ganglion
alt_id: UBERON:FMA_5890-MA_0000226
def: "Sympathetic ganglia are the ganglia of the sympathetic nervous system. They deliver information to the body about stress and impending danger, and are responsible for the familiar fight-or-flight response. They contain approximately 20000–30000 nerve cell bodies and are located close to and on either side of the spinal cord in long chains. [WP,unvetted]." [Wikipedia:Sympathetic_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ganglion of sympathetic nervous system" EXACT [OBOL:automatic]
synonym: "ganglion of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic]
synonym: "ganglion sympatheticum" EXACT []
synonym: "sympathetic nervous system ganglion" EXACT [OBOL:automatic]
synonym: "sympathetic part of autonomic division of nervous system ganglion" EXACT [OBOL:automatic]
xref: BTO:0001333
xref: EHDAA2:0001969
xref: FMA:5890
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png
xref: MA:0000226
xref: ncithesaurus:Sympathetic_Ganglion
is_a: UBERON:0001805 ! autonomic ganglion
relationship: part_of UBERON:0000013
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0000013 ! sympathetic nervous system
[Term]
id: UBERON:0001807
name: paravertebral ganglion
alt_id: UBERON:FMA_5891-ZFA_0001556
def: "Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord." [Wikipedia:Paravertebral_ganglion, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ganglion of sympathetic trunk" EXACT []
synonym: "ganglion trunci sympathetici" EXACT []
synonym: "sympathetic chain ganglion" EXACT []
xref: FMA:5891
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray847.png/200px-Gray847.png
xref: TAO:0001556
xref: ZFA:0001556
is_a: UBERON:0001806 ! sympathetic ganglion
[Term]
id: UBERON:0001808
name: parasympathetic ganglion
alt_id: UBERON:FMA_5894-MA_0002469
def: "Parasympathetic ganglia are the autonomic ganglia of the parasympathetic nervous system. Most are small terminal ganglia or intramural ganglia, so named because they lie near or within (respectively) the organs they innervate. The exceptions are the four paired parasympathetic ganglia of the head and neck. [WP,unvetted]." [Wikipedia:Parasympathetic_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001256
xref: EHDAA2:0001400
xref: FMA:5894
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png
xref: MA:0002469
xref: ncithesaurus:Parasympathetic_Ganglion
xref: NIF_GrossAnatomy:nlx_anat_100303
is_a: UBERON:0001805 ! implied link automatically realized ! autonomic ganglion
relationship: part_of UBERON:0000011
intersection_of: UBERON:0001805 ! autonomic ganglion
intersection_of: part_of UBERON:0000011 ! parasympathetic nervous system
[Term]
id: UBERON:0001809
name: enteric ganglion
alt_id: UBERON:FMA_5896-MA_0001144
comment: This class was created automatically from a combination of ontologies
synonym: "intramural ganglion" EXACT []
xref: FMA:5896
xref: MA:0001144
xref: ncithesaurus:Enteric_Ganglion
is_a: UBERON:0001808 ! parasympathetic ganglion
relationship: part_of UBERON:0002005 ! enteric nervous system
[Term]
id: UBERON:0001810
name: nerve plexus
alt_id: UBERON:FMA_5901-MA_0002407
def: "Anatomical junction where subdivisions of two or more neural trees interconnect with one another to form a network through which nerve fibers of the constituent nerve trees become regrouped; together with other nerve plexuses, nerves and ganglia, it constitutes the peripheral nervous system. Examples: cervical nerve plexus, brachial nerve plexus, sacral nerve plexus[FMA]." [FMA:5901, Wikipedia:Nerve_plexus]
comment: in FMA this is a subtype of junction rather than tissue
subset: uberon_slim
xref: AEO:0000138
xref: BTO:0000205
xref: EHDAA:3780
xref: EHDAA2:0003138
xref: FMA:5901
xref: MA:0002407
xref: ncithesaurus:Nerve_Plexus
is_a: UBERON:0003714 ! neural tissue
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001811
name: conjunctiva
alt_id: UBERON:FMA_59011-XAO_0000182
def: "The conjunctiva is a clear mucous membrane consisting of cells and underlying basement membrane that covers the sclera (white part of the eye) and lines the inside of the eyelids. It is made of epithelial tissue. [WP,unvetted]." [Wikipedia:Conjunctiva]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "wall of conjunctival sac" EXACT []
xref: BTO:0003415
xref: EFO:0000374
xref: FMA:59011
xref: GAID:898
xref: HAO:0000221
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Gray883.png/200px-Gray883.png
xref: MA:0000265
xref: ncithesaurus:Conjunctiva
xref: XAO:0000182
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0001812
name: palpebral conjunctiva
alt_id: UBERON:FMA_59025-MA_0001265
comment: This class was created automatically from a combination of ontologies
synonym: "tunica conjunctiva palpebrum" EXACT []
xref: FMA:59025
xref: MA:0001265
xref: ncithesaurus:Palpebral_Conjunctiva
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0001813
name: somatic nerve plexus
alt_id: UBERON:FMA_5903-MA_0000235
def: "A nerve plexus that is part of a somatic nervous system [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "plexus of spinal nerves" EXACT []
synonym: "spinal nerve plexus" EXACT []
xref: EHDAA2:0001899
xref: FMA:5903
xref: HOG:0000925
xref: MA:0000235
xref: ncithesaurus:Spinal_Nerve_Plexus
is_a: UBERON:0001810 ! implied link automatically realized ! nerve plexus
relationship: part_of UBERON:0000012
intersection_of: UBERON:0001810 ! nerve plexus
intersection_of: part_of UBERON:0000012 ! somatic nervous system
[Term]
id: UBERON:0001814
name: brachial nerve plexus
alt_id: UBERON:FMA_5906-MA_0001180
def: "The brachial plexus is an arrangement of nerve fibers, running from the spine, formed by the ventral rami of the lower cervical and upper thoracic nerve root, specifically from below the fifth cervical vertebra to above the first thoracic vertebra. It proceeds through the neck, the axilla (armpit region) and into the arm. [WP,unvetted]." [Wikipedia:Brachial_plexus]
comment: check superclass - nerve vs collection of fibers vs junction
subset: uberon_slim
synonym: "brachial plexus" EXACT []
xref: EHDAA:3782
xref: EHDAA2:0000180
xref: FMA:5906
xref: GAID:842
xref: HOG:0000372
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3a/Gray808.png/200px-Gray808.png
xref: MA:0001180
xref: ncithesaurus:Brachial_Plexus
xref: OpenCyc:Mx4rwNWmO5wpEbGdrcN5Y29ycA
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0001813 ! somatic nerve plexus
is_a: UBERON:0003377 ! implied link automatically realized ! nerve of peripheral nervous system
is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0001815
name: lumbosacral nerve plexus
alt_id: UBERON:FMA_5907-MA_0001181
def: "The anterior divisions of the lumbar nerve, sacral nerve, and coccygeal nerves form the lumbosacral plexus, the first lumbar nerve being frequently joined by a branch from the twelfth thoracic. For descriptive purposes this plexus is usually divided into three parts: lumbar plexus sacral plexus pudendal plexus [WP,unvetted]." [Wikipedia:Lumbosacral_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lumbosacral plexus" EXACT []
xref: EHDAA:4673
xref: EHDAA2:0001040
xref: FMA:5907
xref: GAID:849
xref: HOG:0000926
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Gray822.png/200px-Gray822.png
xref: MA:0001181
xref: ncithesaurus:Lumbosacral_Plexus
xref: OpenCyc:Mx4rvzYo75wpEbGdrcN5Y29ycA
is_a: UBERON:0001813 ! somatic nerve plexus
[Term]
id: UBERON:0001816
name: autonomic nerve plexus
alt_id: UBERON:FMA_5910-MA_0000221
def: "A nerve plexus that is part of an autonomic nervous system [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "autonomic plexus" EXACT []
synonym: "visceral nerve plexus" EXACT []
synonym: "visceral plexus" EXACT []
xref: FMA:5910
xref: MA:0000221
is_a: UBERON:0001810 ! implied link automatically realized ! nerve plexus
relationship: part_of UBERON:0002410
intersection_of: UBERON:0001810 ! nerve plexus
intersection_of: part_of UBERON:0002410 ! autonomic nervous system
[Term]
id: UBERON:0001817
name: lacrimal gland
alt_id: UBERON:FMA_59101-MA_0001296
def: "Lobular organ the parenchyma of which consists of glandular acini which communicate the lacrimal sac. Examples: There only two instances, right lacrimal and left lacrimal glands[FMA]. The lacrimal glands are paired almond-shaped glands, one for each eye, that secrete the aqueous layer of the tear film. They are situated in the upper, outer portion of each orbit. Inflammation of the lacrimal glands is called dacryoadenitis[WP]." [Wikipedia:Lacrimal_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EFO:0001389
xref: FMA:59101
xref: HOG:0001476
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray896.png/200px-Gray896.png
xref: MA:0001296
xref: ncithesaurus:Lacrimal_Gland
is_a: UBERON:0002365 ! implied link automatically realized ! exocrine gland
is_a: UBERON:0002530 ! gland
is_a: UBERON:0004859 ! implied link automatically realized ! eye gland
relationship: part_of UBERON:0001750 ! lacrimal apparatus
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0001818
name: tarsal gland
alt_id: UBERON:FMA_59104-MA_0001249
def: "The meibomian glands (or tarsal glands) are a special kind of sebaceous glands at the rim of the eyelids, responsible for the supply of sebum, an oily substance that prevents evaporation of the eye's tear film, prevents tear spillage onto the cheek, and makes the closed lids airtight. There are approximately 50 glands on the upper eyelids and 25 glands on the lower eyelids. The glands are named after Heinrich Meibom (1638-1700), a German physician. [WP,unvetted]." [Wikipedia:Tarsal_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gland of meibom" EXACT []
synonym: "meibomian gland" EXACT []
synonym: "palpebral gland" RELATED []
xref: FMA:59104
xref: GAID:899
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Gray1205.png/200px-Gray1205.png
xref: MA:0001249
xref: ncithesaurus:Meibomian_Gland
is_a: UBERON:0001821 ! sebaceous gland
is_a: UBERON:0004859 ! implied link automatically realized ! eye gland
relationship: part_of UBERON:0004772 ! eyelid tarsus
[Term]
id: UBERON:0001819
name: palpebral fissure
alt_id: UBERON:FMA_59110-MA_0001266
def: "Palpebral fissure is the anatomic name for the separation between the upper and lower eyelids. In the adult this measures about 10mm vertically and 30 mm horizontally. It can be reduced in size in fetal alcohol syndrome. In Trisomy 9 the palpebral fissures can be upslanting. [WP,unvetted]." [Wikipedia:Palpebral_fissure]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:59110
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray892.png/200px-Gray892.png
xref: MA:0001266
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0001820
name: sweat gland
alt_id: UBERON:FMA_59152-MA_0000150
def: "Sweat glands are exocrine glands, found in the skin of all mammal species, that are used for body temperature regulation. In humans a system of apocrine - and merocrine sweat glands is the main method of cooling. Many other mammals rely on panting or other means as a primary source of cooling, but still use sweat glands to aid in body temperature regulation. Sweat also serves a purpose of increasing friction on the palms of hands or the pads of paws. Both apocrine and merocrine sweat glands contain myoepithelial cells (from Greek myo-, 'muscle'), specialized epithelial cells located between the gland cells and the underlying basal lamina. Myoepithelial cell contractions squeeze the gland and discharge the accumulated secretions. The secretory activities of the gland cells and the contractions of myoepithelial cells are controlled by both the autonomic nervous system and by the circulating hormones. Additionally, ceruminous glands, which produce ear wax, and mammary glands, which produce milk, are frequently considered to be modified sweat glands. [WP,unvetted]." [Wikipedia:Sweat_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001331
xref: FMA:59152
xref: GAID:943
xref: HOG:0001467
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png
xref: MA:0000150
xref: ncithesaurus:Sweat_Gland
xref: OpenCyc:Mx4rvVjx15wpEbGdrcN5Y29ycA
is_a: UBERON:0002365 ! implied link automatically realized ! exocrine gland
is_a: UBERON:0002419 ! implied link automatically realized ! skin gland
is_a: UBERON:0002530 ! gland
relationship: secretes UBERON:0001089
intersection_of: UBERON:0002530 ! gland
intersection_of: secretes UBERON:0001089 ! sweat
relationship: part_of UBERON:0002097 ! skin of body
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0001821
name: sebaceous gland
alt_id: UBERON:FMA_59160-MA_0002565
def: "The sebaceous glands are microscopic glands in the skin which secrete an oily/waxy matter, called sebum, to lubricate the skin and hair of animals. [WP,unvetted]." [Wikipedia:Sebaceous_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001980
xref: FMA:59160
xref: GAID:900
xref: HOG:0001468
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/HairFollicle.png/200px-HairFollicle.png
xref: MA:0002565
xref: ncithesaurus:Sebaceous_Gland
is_a: UBERON:0002365 ! implied link automatically realized ! exocrine gland
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0001822
name: orbital septum
alt_id: UBERON:FMA_59328-MA_0001259
def: "a membranous sheet that acts as the anterior boundary of the orbit. It extends from the orbital rims to the eyelids[WP]." [Wikipedia:Orbital_septum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:59328
xref: MA:0001259
is_a: UBERON:0003037 ! septum
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002204 ! musculoskeletal system
relationship: surrounds UBERON:0001697 ! orbit
[Term]
id: UBERON:0001823
name: nasal cartilage
alt_id: UBERON:FMA_59502-MA_0001883
def: "One of the cartilage structures in the nose that provide form and support[WP]." [Wikipedia:Nasal_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cartilage of nose" EXACT []
xref: FMA:59502
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray852.png/200px-Gray852.png
xref: MA:0001883
xref: ncithesaurus:Nasal_Cartilage
is_a: UBERON:0002236 ! costal cartilage
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0000004
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0000004 ! olfactory apparatus
relationship: encloses UBERON:0000402 ! nasal vestibule
[Term]
id: UBERON:0001824
name: mucosa of larynx
alt_id: UBERON:FMA_59662-MA_0001766
def: "the mucous lining of the larynx, which is composed of squamous epithelium in the upper larynx and ciliated columnar epithelium in the lower larynx." [MP:0002261]
comment: This class was created automatically from a combination of ontologies
synonym: "laryngeal mucosa" EXACT []
synonym: "larynx mucosa" EXACT []
synonym: "larynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "larynx mucous membrane" EXACT [OBOL:automatic]
synonym: "larynx organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of larynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of larynx" EXACT []
synonym: "organ mucosa of larynx" EXACT [OBOL:automatic]
xref: FMA:59662
xref: GAID:301
xref: MA:0001766
xref: ncithesaurus:Laryngeal_Mucosa
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa
relationship: part_of UBERON:0001737
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0001825
name: paranasal sinus
alt_id: UBERON:FMA_59679-MA_0000431
def: "Paranasal sinuses are air-filled spaces, communicating with the nasal cavity, within the bones of the skull and face. [WP,unvetted]." [Wikipedia:Paranasal_sinus]
subset: uberon_slim
synonym: "nasal sinus" RELATED [GAID:355]
synonym: "sinus" BROAD []
xref: FMA:59679
xref: GAID:355
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Nnh_front.svg/200px-Nnh_front.svg.png
xref: MA:0000431
xref: ncithesaurus:Paranasal_Sinus
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0001826
name: nasal cavity mucosa
alt_id: UBERON:FMA_59684-MA_0001324
def: "the mucous membrane that lines the nasal cavity[MP]." [MP:0002238]
comment: TODO - check lining vs part of. split olfactory and nasal mucosa?
synonym: "mucosa of nose" EXACT [FMA:59684]
synonym: "mucous membrane of nose" EXACT [FMA:59684]
synonym: "nasal mucosa" RELATED []
xref: BTO:0000912
xref: FMA:59684
xref: GAID:302
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa
relationship: part_of UBERON:0001707
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001707 ! nasal cavity
[Term]
id: UBERON:0001827
name: tear
alt_id: UBERON:FMA_59756-MA_0002508
def: "Secretion produced by the lacrimal gland." [Wikipedia:Tear]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001499
xref: ENVO:02000034
xref: FMA:59756
xref: GAID:1173
xref: galen:Tear
xref: galen:Tears
xref: MA:0002508
xref: ncithesaurus:Tear
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001828
name: gingiva
alt_id: UBERON:FMA_59762-MA_0000342
def: "The gingiva, or gums, consists of the mucosal tissue that lies over the alveolar bone. [WP,unvetted]." [Wikipedia:Gingiva]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gum" RELATED []
xref: BTO:0000519
xref: EFO:0001925
xref: FMA:59762
xref: GAID:1257
xref: galen:Gingiva
xref: HOG:0001269
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Tooth_Section.svg/200px-Tooth_Section.svg.png
xref: MA:0000342
xref: ncithesaurus:Gingiva
xref: OpenCyc:Mx4rvViWnZwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000166 ! oral opening
[Term]
id: UBERON:0001829
name: major salivary gland
alt_id: UBERON:FMA_59788-MA_0002478
def: "the three largest glands of the oral cavity that secrete most of the saliva, including the parotid, submandibular, and sublingual glands." [MP:0003792]
comment: This class was created automatically from a combination of ontologies
xref: FMA:59788
xref: galen:MajorSalivaryGland
xref: MA:0002478
xref: ncithesaurus:Major_Salivary_Gland
is_a: UBERON:0001044 ! salivary gland
is_a: UBERON:0002365 ! implied link automatically realized ! exocrine gland
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0001830
name: minor salivary gland
alt_id: UBERON:FMA_59789-MA_0002479
def: "the smaller, largely mucus-secreting, exocrine glands of the oral cavity, consisting of the labial, buccal, molar, lingual, and palatine glands[MP]. There are over 600 minor salivary glands located throughout the oral cavity within the lamina propria of the oral mucosa. They are 1-2mm in diameter and unlike the other glands, they are not encapsulated by connective tissue only surrounded by it. The gland is usually a number of acini connected in a tiny lobule. A minor salivary gland may have a common excretory duct with another gland, or may have its own excretory duct. Their secretion is mainly mucous in nature (except for Von Ebner's glands) and have many functions such as coating the oral cavity with saliva. Problems with dentures are usually associated with minor salivary glands[WP]." [MP:0003791, Wikipedia:Salivary_gland#Minor_Salivary_Glands]
comment: This class was created automatically from a combination of ontologies
xref: FMA:59789
xref: GAID:940
xref: galen:MinorSalivaryGland
xref: MA:0002479
xref: ncithesaurus:Minor_Salivary_Gland
is_a: UBERON:0001044 ! salivary gland
is_a: UBERON:0002365 ! implied link automatically realized ! exocrine gland
is_a: UBERON:0003293 ! implied link automatically realized ! gland of oral region
relationship: part_of UBERON:0002330 ! exocrine system
relationship: part_of UBERON:0005334 ! oral lamina propria
[Term]
id: UBERON:0001831
name: parotid gland
alt_id: UBERON:FMA_59790-MA_0001585
def: "The parotid gland is the largest of the salivary glands. It is found wrapped around the mandibular ramus, and it secretes saliva through Stensen's duct into the oral cavity, to facilitate mastication and swallowing. [WP,unvetted]." [Wikipedia:Parotid_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "parotid" EXACT []
xref: BTO:0001004
xref: EFO:0002558
xref: FMA:59790
xref: GAID:938
xref: galen:ParotidGland
xref: HOG:0000308
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Illu_quiz_hn_02.jpg/200px-Illu_quiz_hn_02.jpg
xref: MA:0001585
xref: ncithesaurus:Parotid_Gland
xref: OpenCyc:Mx4rvqwyg5wpEbGdrcN5Y29ycA
is_a: UBERON:0001829 ! major salivary gland
relationship: part_of UBERON:0001567 ! cheek
[Term]
id: UBERON:0001832
name: sublingual gland
alt_id: UBERON:FMA_59791-MA_0001588
def: "The sublingual glands are salivary glands in the mouth. They lie anterior to the submandibular gland under the tongue, beneath the mucous membrane of the floor of the mouth. They are drained by 8-20 excretory ducts called the ducts of Rivinus. The largest duct, the sublingual duct (of Bartholin) joins the submandibular duct to drain through the sublingual caruncle. The sublingual gland consists mostly of Mucous acini capped with serous demilunes and is therefore categorized as a mixed gland. Most of the remaining small sublingual ducts open separately into the mouth on an elevated crest of mucous membrane, the sublingual fold, caused by the gland and on either side of the frenulum linguae. The chorda tympani nerve is secretomotor to the sublingual glands. [WP,unvetted]." [Wikipedia:Sublingual_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ductus sublingualis" EXACT []
synonym: "Rivinus' gland" EXACT []
xref: BTO:0001315
xref: FMA:59791
xref: GAID:941
xref: HOG:0000363
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray1024.png/200px-Gray1024.png
xref: MA:0001588
is_a: UBERON:0001829 ! major salivary gland
[Term]
id: UBERON:0001833
name: lip
alt_id: UBERON:FMA_59816-ZFA_0007006
def: "One of the two fleshy folds which surround the opening of the mouth. http://www.medterms.com/script/main/art.asp?articlekey=9458" [Wikipedia:Lip, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lips" RELATED []
xref: BTO:0001647
xref: FMA:59816
xref: GAID:76
xref: galen:Lip
xref: HOG:0000677
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Mouth.jpg/200px-Mouth.jpg
xref: MA:0000343
xref: ncithesaurus:Lip
xref: OpenCyc:Mx4rvVi4U5wpEbGdrcN5Y29ycA
xref: TAO:0007006
xref: ZFA:0007006
is_a: UBERON:0003102 ! surface structure
relationship: part_of UBERON:0000165 ! mouth
relationship: surrounds UBERON:0000166 ! oral opening
[Term]
id: UBERON:0001834
name: upper lip
alt_id: UBERON:FMA_59817-MA_0000919
def: "The upper lip covers the anterior surface of the body of the maxilla. Its upper half is of usual skin color and has a depression at its centre, directly under the nasal septum, called the philtrum, while its lower half is a markedly different, red-colored skin tone more similar to the colour of the inside of the mouth, and the term vermillion refers to the colored portion of either the upper or lower lip. It is raised by the Levator labii superioris and is connected to the lower lip by the thin lining of the lip itself, which can be seen by opening your mouth wide in front of a mirror. Thinning of the vermilion of the upper lip and flattening of the philtrum are two of the facial characteristics of Fetal alcohol syndrome, a life-long disability caused by the consumption of alcohol during pregnancy. [WP,unvetted]." [Wikipedia:Upper_lip]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:59817
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d4/Illu01_head_neck.jpg/200px-Illu01_head_neck.jpg
xref: MA:0000919
xref: OpenCyc:Mx4rvWPv7pwpEbGdrcN5Y29ycA
xref: ZFA:0005226
is_a: UBERON:0001833 ! lip
relationship: develops_from UBERON:0004068 ! medial nasal prominence
relationship: develops_from UBERON:0005868 ! maxillary prominence
[Term]
id: UBERON:0001835
name: lower lip
alt_id: UBERON:FMA_59818-MA_0000921
def: "The lower lip (also called underlip) covers the anterior body of the mandible. It is lowered by the Depressor labii inferioris muscle. [WP,unvetted]." [Wikipedia:Lower_lip]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:59818
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Mouth.jpg/200px-Mouth.jpg
xref: MA:0000921
xref: OpenCyc:Mx4rv842UpwpEbGdrcN5Y29ycA
xref: ZFA:0005225
is_a: UBERON:0001833 ! lip
relationship: develops_from UBERON:0005867 ! mandibular prominence
[Term]
id: UBERON:0001836
name: saliva
alt_id: UBERON:FMA_59862-MA_0002507
def: "In humans, the saliva is a turbid and slightly viscous fluid, generally of an alkaline reaction, and is secreted by the parotid, submaxillary, and sublingual glands. In the mouth the saliva is mixed with the secretion from the buccal glands. In man and many animals, saliva is an important digestive fluid on account of the presence of the peculiar enzyme, ptyalin[GO]." [GO:0046541, Wikipedia:Saliva]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001202
xref: ENVO:02000036
xref: FMA:59862
xref: GAID:1167
xref: galen:Saliva
xref: MA:0002507
xref: MAT:0000444
xref: ncithesaurus:Saliva
xref: OpenCyc:Mx4rvVjJ95wpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001837
name: duct of salivary gland
alt_id: UBERON:FMA_59908-MA_0001586
def: "." [Wikipedia:Salivary_duct]
comment: check taxonomy coverage - define functionally?
subset: uberon_slim
synonym: "salivary duct" EXACT []
synonym: "salivary gland duct" EXACT []
xref: FMA:59908
xref: GAID:939
xref: MA:0001586
is_a: UBERON:0000058 ! duct
is_a: UBERON:0003928 ! implied link automatically realized ! digestive system duct
relationship: part_of UBERON:0001044 ! salivary gland
[Term]
id: UBERON:0001838
name: sublingual duct
alt_id: UBERON:FMA_59983-MA_0002699
def: "The excretory ducts of the sublingual gland are from eight to twenty in number. Of the smaller sublingual ducts (ducts of Rivinus), some join the submandibular duct; others open separately into the mouth, on the elevated crest of mucous membrane (plica sublingualis), caused by the projection of the gland, on either side of the frenulum linguae. One or more join to form the major sublingual duct (larger sublingual duct, duct of Bartholin), which opens into the submandibular duct. [WP,unvetted]." [Wikipedia:Sublingual_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:59983
xref: MA:0002699
is_a: UBERON:0001837 ! duct of salivary gland
relationship: part_of UBERON:0001832 ! sublingual gland
[Term]
id: UBERON:0001839
name: bony labyrinth
alt_id: UBERON:FMA_60179-MA_0000238-XAO_0000193
def: "A system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Bony_labyrinth]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "osseous labyrinth" EXACT []
synonym: "osseus labyrinth" RELATED []
xref: FMA:60179
xref: HOG:0001219
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray920.png/200px-Gray920.png
xref: MA:0000238
xref: ncithesaurus:Osseous_Labyrinth
xref: XAO:0000193
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001694 ! petrous part of temporal bone
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0001840
name: semicircular canal
alt_id: UBERON:FMA_60186-MA_0000249-XAO_0000198-ZFA_0000431
def: "One of three half-circular, interconnected tubes located inside each ear[WP]. Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Semicircular_canal, ZFIN:curator]
comment: The three canals are the horizontal semicircular canal (also known as the lateral semicircular canal), superior semicircular canal (also known as the anterior semicircular canal), and the posterior semicircular canal.
subset: uberon_slim
xref: BTO:0003383
xref: FMA:60186
xref: GAID:776
xref: HOG:0001144
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Balance_Disorder_Illustration_A.png/200px-Balance_Disorder_Illustration_A.png
xref: MA:0000249
xref: ncithesaurus:Semicircular_Canal
xref: TAO:0000431
xref: XAO:0000198
xref: ZFA:0000431
is_a: UBERON:0000025 ! tube
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001839 ! bony labyrinth
[Term]
id: UBERON:0001841
name: anterior semicircular canal
alt_id: UBERON:FMA_60187-MA_0001207-ZFA_0000314
def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Anterior_semicircular_canal, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior semicircular canals" RELATED []
synonym: "anterior semicircular duct" RELATED []
synonym: "rostral vertical semicircular canal" RELATED []
synonym: "superior semicircular canal" EXACT []
xref: EHDAA:7802
xref: EHDAA2:0001959
xref: FMA:60187
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png
xref: MA:0001207
xref: ncithesaurus:Superior_Semicircular_Canal
xref: TAO:0000314
xref: ZFA:0000314
is_a: UBERON:0001840 ! semicircular canal
relationship: part_of UBERON:0001840 ! semicircular canal
[Term]
id: UBERON:0001842
name: posterior semicircular canal
alt_id: UBERON:FMA_60190-MA_0001209-ZFA_0000262
def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Posterior_semicircular_canal, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "caudal vertical semicircular canal" RELATED []
synonym: "posterior semicircular canals" RELATED []
synonym: "posterior semicircular duct" RELATED []
xref: EHDAA:7796
xref: EHDAA2:0001489
xref: FMA:60190
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png
xref: MA:0001209
xref: ncithesaurus:Posterior_Semicircular_Canal
xref: TAO:0000262
xref: ZFA:0000262
is_a: UBERON:0001840 ! semicircular canal
relationship: part_of UBERON:0001840 ! semicircular canal
[Term]
id: UBERON:0001843
name: lateral semicircular canal
alt_id: UBERON:FMA_60193-MA_0001208-ZFA_0000220
def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Lateral_semicircular_canal, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "horizontal semicircular canal" RELATED []
synonym: "lateral semicircular canals" RELATED []
synonym: "lateral semicircular duct" RELATED []
xref: EHDAA:7790
xref: EHDAA2:0000920
xref: FMA:60193
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png
xref: MA:0001208
xref: TAO:0000220
xref: ZFA:0000220
is_a: UBERON:0001840 ! semicircular canal
relationship: part_of UBERON:0001840 ! semicircular canal
[Term]
id: UBERON:0001844
name: cochlea
alt_id: UBERON:FMA_60201-MA_0000240-MIAA_0000144-XAO_0000197
def: "The cochlea is the auditory portion of the inner ear. Its core component is the Organ of Corti, the sensory organ of hearing, which is distributed along the partition separating fluid chambers in the coiled tapered tube of the cochlea. The name is from the Latin for snail, which is from the Greek kokhlias 'snail, screw,' from kokhlos 'spiral shell,' in reference to its coiled shape; the cochlea is coiled in most mammals, monotremes being the exceptions. [WP,unvetted]." [Wikipedia:Cochlea]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cochlear part of bony labyrinth" EXACT []
synonym: "lagena" EXACT []
xref: AAO:0000253
xref: BTO:0000267
xref: EFO:0000357
xref: FMA:60201
xref: GAID:724
xref: HOG:0000691
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png
xref: MA:0000240
xref: MAT:0000144
xref: MIAA:0000144
xref: ncithesaurus:Cochlea
xref: NIF_GrossAnatomy:birnlex_1190
xref: NIF_GrossAnatomy:birnlex_883
xref: OpenCyc:Mx4rvqfJmJwpEbGdrcN5Y29ycA
xref: TAO:0000374
xref: XAO:0000197
xref: ZFA:0000374
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001839 ! bony labyrinth
[Term]
id: UBERON:0001845
name: perilymph
alt_id: UBERON:FMA_60908-MA_0002529
def: "Transudate contained in the osseous labyrinth outside the membranous labyrinth." [Wikipedia:Perilymph]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:60908
xref: GAID:1185
xref: MA:0002529
xref: ncithesaurus:Perilymph
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001846
name: internal ear
alt_id: UBERON:FMA_60909-MA_0000237-MIAA_0000145-XAO_0000192-ZFA_0000217
def: "Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ear" RELATED []
synonym: "inner ear" EXACT []
synonym: "labyrinth" RELATED []
synonym: "otocyst" RELATED []
xref: AAO:0000238
xref: BTO:0000630
xref: EFO:0001363
xref: EHDAA:504
xref: EHDAA2:0000423
xref: FMA:60909
xref: galen:InnerEar
xref: HOG:0000284
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png
xref: MA:0000237
xref: MAT:0000145
xref: MIAA:0000145
xref: ncithesaurus:Internal_Ear
xref: NIF_GrossAnatomy:birnlex_1196
xref: OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA
xref: TAO:0000217
xref: XAO:0000192
xref: ZFA:0000217
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001690 ! ear
[Term]
id: UBERON:0001847
name: lobule of pinna
alt_id: UBERON:FMA_60984-MA_0002468
def: "The earlobe is, in humans and many other animals, the soft lower part of the external ear. It is the lowermost portion of the human pinna, projecting below the antitragus. The earlobe is composed of tough areolar and adipose (fatty) connective tissues, lacking the firmness and elasticity of the rest of the pinna. Since the earlobe does not contain cartilage the earlobe has a large blood supply and may help to warm the ears and maintain balance but generally earlobes are not considered to have any major biological function. [WP,unvetted]." [Wikipedia:Ear_lobe]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "auricular lobule" EXACT []
synonym: "ear lobe" EXACT []
synonym: "ear lobule" RELATED []
synonym: "lobe of ear" EXACT []
synonym: "lobule of auricle" RELATED []
synonym: "lobule of auricle of ear" EXACT []
synonym: "pinna lobule" EXACT []
xref: FMA:60984
xref: MA:0002468
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0001848
name: auricular cartilage
alt_id: UBERON:FMA_61013-MA_0001227
comment: This class was created automatically from a combination of ontologies
synonym: "cartilage of pinna" EXACT []
xref: FMA:61013
xref: MA:0001227
is_a: UBERON:0001867 ! implied link automatically realized ! cartilage of external ear
is_a: UBERON:0002418 ! cartilage
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0001849
name: membranous labyrinth
alt_id: UBERON:FMA_61022-MA_0000242-XAO_0000194
def: "Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left." [Wikipedia:Membranous_labyrinth]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:61022
xref: HOG:0000729
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray924.png/200px-Gray924.png
xref: MA:0000242
xref: ncithesaurus:Membranous_Labyrinth
xref: XAO:0000194
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0001850
name: lacrimal duct
alt_id: UBERON:FMA_61063-MA_0001295
def: "Organ with organ cavity which connects the vestibule of the conjunctival sac to the nasal cavity. Examples: There are only two lacrimal ducts, the right and the left lacrimal ducts." [Wikipedia:Lacrimal_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "tear duct" RELATED []
xref: FMA:61063
xref: MA:0001295
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0001750 ! lacrimal apparatus
[Term]
id: UBERON:0001851
name: cortex
alt_id: UBERON:FMA_61109-XAO_0000216
def: "Outermost layer of an organ[WP]." [Wikipedia:Cortex_(anatomy)]
comment: This class is used in a very general sense
subset: uberon_slim
xref: EFO:0000383
xref: EHDAA:9344
xref: FMA:61109
xref: galen:Cortex
is_a: UBERON:0000064 ! organ part
relationship: surrounds UBERON:0000062 ! organ
[Term]
id: UBERON:0001852
name: endolymph
alt_id: UBERON:FMA_61112-MA_0002528
def: "Transudate contained within the membranous labyrinth." [Wikipedia:Endolymph]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:61112
xref: GAID:1184
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png
xref: MA:0002528
xref: ncithesaurus:Endolymph
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001849 ! membranous labyrinth
[Term]
id: UBERON:0001853
name: utricle of membranous labyrinth
alt_id: UBERON:FMA_61113-MA_0000247-XAO_0000195-ZFA_0000700
def: "one of the two otolith organs located in the vertebrate inner ear. These use small stones and a viscous fluid to stimulate hair cells to detect motion and orientation. The utricle is larger than the saccule and is of an oblong form, compressed transversely, and occupies the upper and back part of the vestibule, lying in contact with the recessus ellipticus and the part below it. The utricle contains mechanoreceptors called hair cells that distinguish between degrees of tilting of the head, thanks to their apical cilia set-up. These are covered by otolith which, due to gravity, pull on the cilia and tilt them. Depending on whether the tilt is in the direction of the kinocilium or not, the resulting hair cell polarisation is excitatory (depolarising) or inhibitory (hyperpolarisation), respectively. This signal to the vestibular nerve (which takes it to the brainstem) does not adapt with time. The effect of this is that, for example, an individual lying down to sleep will continue to detect that they are lying down hours later when they awaken[WP]." [Wikipedia:Utricle_(ear)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "membranous labyrinth utricle" EXACT []
synonym: "utricle" EXACT []
synonym: "utriculus (labyrinthus vestibularis)" EXACT []
xref: BTO:0001807
xref: EHDAA:4726
xref: EHDAA2:0002153
xref: FMA:61113
xref: HOG:0000289
xref: MA:0000247
xref: ncithesaurus:Utricle
xref: TAO:0000700
xref: XAO:0000195
xref: ZFA:0000700
is_a: UBERON:0002518 ! otolith organ
[Term]
id: UBERON:0001854
name: saccule of membranous labyrinth
alt_id: UBERON:FMA_61116-MA_0000246-ZFA_0000428
def: "A bed of sensory cells situated in the inner ear. The saccule translates head movements into neural impulses which the brain can interpret. The saccule is sensitive to linear translations of the head, specifically movements up and down (think about moving on an elevator). When the head moves vertically, the sensory cells of the saccule are disturbed and the neurons connected to them begin transmitting impulses to the brain. These impulses travel along the vestibular portion of the eighth cranial nerve to the vestibular nuclei in the brainstem. is the smaller of the two vestibular sacs. It is globular in form and lies in the recessus sphæricus near the opening of the scala vestibuli of the cochlea. Its cavity does not directly communicate with that of the utricle. The anterior part of the saccule exhibits an oval thickening, the macula acustica sacculi, or macula, to which are distributed the saccular filaments of the vestibular branch of the vestibulocochlear nerve, also known as the acoustic nerve or cranial nerve VIII[WP]." [Wikipedia:Saccule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "membranous labyrinth saccule" EXACT []
synonym: "saccule" EXACT []
synonym: "sacculus (labyrinthus vestibularis)" EXACT []
xref: BTO:0001805
xref: EHDAA:4712
xref: EHDAA2:0001769
xref: FMA:61116
xref: HOG:0000374
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Bigotolith.jpg/200px-Bigotolith.jpg
xref: MA:0000246
xref: ncithesaurus:Saccule
xref: TAO:0000428
xref: XAO:0000196
xref: ZFA:0000428
is_a: UBERON:0002518 ! otolith organ
[Term]
id: UBERON:0001855
name: cochlear duct of membranous labyrinth
alt_id: UBERON:FMA_61119-MA_0000243
def: "An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Houses the organ of Corti[WP]." [Wikipedia:Cochlear_duct]
comment: TODO: check cochlear duct vs cochlear aqueduct vs scala media
subset: uberon_slim
synonym: "cochlear aqueduct" RELATED []
synonym: "cochlear duct" EXACT []
synonym: "Reissner's canal" EXACT []
synonym: "scala media" RELATED [Wikipedia:Cochlear_duct]
xref: BTO:0001692
xref: EHDAA:4718
xref: EHDAA2:0000262
xref: EMAPA:17598
xref: FMA:61119
xref: GAID:874
xref: HOG:0000507
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Gray928.png/200px-Gray928.png
xref: MA:0000243
xref: ncithesaurus:Cochlear_Duct
xref: NIF_GrossAnatomy:birnlex_2562
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005744 ! implied link automatically realized ! cranial conduit
relationship: part_of UBERON:0001844 ! cochlea
relationship: part_of UBERON:0001849 ! membranous labyrinth
relationship: part_of UBERON:0002499 ! cochlear labyrinth
[Term]
id: UBERON:0001856
name: semicircular duct
alt_id: UBERON:FMA_61122-MA_0000251
comment: TODO - check canal vs duct. see http://en.wikipedia.org/wiki/File:Gray927.png
xref: FMA:61122
xref: HOG:0000238
xref: MA:0000251
xref: ncithesaurus:Semicircular_Duct
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005744 ! implied link automatically realized ! cranial conduit
relationship: part_of UBERON:0001840 ! semicircular canal
relationship: part_of UBERON:0001862 ! vestibular labyrinth
[Term]
id: UBERON:0001857
name: anterior semicircular duct
alt_id: UBERON:FMA_61123-MA_0001211
comment: This class was created automatically from a combination of ontologies
xref: FMA:61123
xref: HOG:0000246
xref: MA:0001211
is_a: UBERON:0001856 ! semicircular duct
relationship: part_of UBERON:0001841 ! anterior semicircular canal
[Term]
id: UBERON:0001858
name: posterior semicircular duct
alt_id: UBERON:FMA_61126-MA_0001214
def: "The semicircular canals are three half-circular, interconnected tubes located inside each ear. The three canals are the horizontal semicircular canal (also known as the lateral semicircular canal), superior semicircular canal (also known as the anterior semicircular canal), and the posterior semicircular canal. The canals are aligned approximately orthogonally to one another. The horizontal canal is aligned roughly horizontally in the head. The superior and anterior canals are aligned roughly at a 45 degree angle to a vertical plane drawn from the nose to the back of the skull. Thus, the horizontal canal detects horizontal head movements (such as when doing a pirouette), while the superior and posterior canals detect vertical head movements. Each canal is filled with a fluid called endolymph and contains a motion sensor with little hairs whose ends are embedded in a gelatinous structure called the cupula. As the skull twists in any direction, the endolymph is thrown into different sections of the canals. The cilia detect when the endolymph rushes past, and a signal is then sent to the brain. The semicircular canals are a component of the Labyrinth. Among species of mammals, the size of the semicircular canals is correlated with their type of locomotion. Specifically, species that are agile and have fast, jerky locomotion have larger canals relative to their body size than those that move more cautiously. [WP,unvetted]." [Wikipedia:Posterior_semicircular_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:61126
xref: HOG:0000248
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Balance_Disorder_Illustration_A.png/200px-Balance_Disorder_Illustration_A.png
xref: MA:0001214
is_a: UBERON:0001856 ! semicircular duct
relationship: part_of UBERON:0001842 ! posterior semicircular canal
[Term]
id: UBERON:0001859
name: lateral semicircular duct
alt_id: UBERON:FMA_61129-MA_0001213
def: "The lateral or horizontal canal (external semicircular canal) is the shortest of the three canals. Movement of fluid within this canal corresponds to rotation of the head around a vertical axis (i.e. the neck). [WP,unvetted]." [Wikipedia:Lateral_semicircular_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:61129
xref: HOG:0000247
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png
xref: MA:0001213
is_a: UBERON:0001856 ! semicircular duct
relationship: part_of UBERON:0001843 ! lateral semicircular canal
[Term]
id: UBERON:0001860
name: endolymphatic duct
alt_id: UBERON:FMA_61246-MA_0001187
def: "From the posterior wall of the saccule a canal, the endolymphatic duct, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. [WP,unvetted]." [Wikipedia:Endolymphatic_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:61246
xref: GAID:886
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray924.png/200px-Gray924.png
xref: MA:0001187
xref: ZFA:0001705
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0001849 ! membranous labyrinth
[Term]
id: UBERON:0001861
name: ductus reuniens
alt_id: UBERON:FMA_61252-MA_0000244
comment: This class was created automatically from a combination of ontologies
xref: FMA:61252
xref: MA:0000244
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001849 ! membranous labyrinth
[Term]
id: UBERON:0001862
name: vestibular labyrinth
alt_id: UBERON:FMA_61255-MA_0000245
comment: This class was created automatically from a combination of ontologies
synonym: "vestibular apparatus" RELATED []
xref: BTO:0001856
xref: FMA:61255
xref: MA:0000245
xref: ncithesaurus:Vestibular_Labyrinth
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001849 ! membranous labyrinth
[Term]
id: UBERON:0001863
name: scala vestibuli
alt_id: UBERON:FMA_61269-MA_0001206
def: "Scala vestibuli is a perilymph filled cavity inside the cochlea of the inner ear. It is separated from the scala media by Reissner's membrane and extends from the oval window to the helicotrema where it joins scala tympani. [WP,unvetted]." [Wikipedia:Scala_vestibuli]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:61269
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png
xref: MA:0001206
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001844 ! cochlea
relationship: part_of UBERON:0002278 ! perilymphatic space
[Term]
id: UBERON:0001864
name: scala tympani
alt_id: UBERON:FMA_61272-MA_0001205
def: "Scala tympani is one of the perilymph-filled cavities in the cochlear labyrinth. It is separated from the scala media by the basilar membrane, and it extends from the round window to the helicotrema, where it continues as scala vestibuli. The purpose of the perilymph-filled scala tympani and scala vestibuli is to transduce the movement of air that causes the tympanic membrane and the ossicles to vibrate, to movement of liquid and the basilar membrane. This movement is conveyed to the organ of Corti inside the scala media, composed of hair cells attached to the basilar membrane and their stereocilia embedded in the tectorial membrane. The movement of the basilar membrane compared to the tectorial membrane causes the sterocilia to bend. They then depolarise and send impulses to the brain via the cochlear nerve. This produces the sensation of sound. [WP,unvetted]." [Wikipedia:Scala_tympani]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:61272
xref: GAID:879
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png
xref: MA:0001205
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001844 ! cochlea
relationship: part_of UBERON:0002278 ! perilymphatic space
[Term]
id: UBERON:0001865
name: cartilaginous external acoustic tube
alt_id: UBERON:FMA_61289-MA_0001234
comment: This class was created automatically from a combination of ontologies
synonym: "cartilaginous external acoustic meatus" EXACT []
synonym: "cartilaginous part of external acoustic meatus" EXACT []
synonym: "external acoustic meatus cartilaginous part" EXACT []
xref: FMA:61289
xref: MA:0001234
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001352 ! external acoustic meatus
[Term]
id: UBERON:0001866
name: sebum
alt_id: UBERON:FMA_61304-MA_0002538
def: "The sebaceous glands are microscopic glands in the skin which secrete an oily/waxy matter, called sebum, to lubricate the skin and hair of animals. [WP,unvetted]." [Wikipedia:Sebum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001981
xref: ENVO:02000037
xref: FMA:61304
xref: GAID:1168
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/HairFollicle.png/200px-HairFollicle.png
xref: MA:0002538
xref: ncithesaurus:Sebum
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001867
name: cartilage of external ear
alt_id: UBERON:FMA_61339-MA_0001886
def: "A cartilage that is part of a external ear [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "auricular region cartilage" EXACT [OBOL:automatic]
synonym: "auricular region of head cartilage" EXACT [OBOL:automatic]
synonym: "cartilage of auricular region" EXACT [OBOL:automatic]
synonym: "cartilage of auricular region of head" EXACT [OBOL:automatic]
synonym: "cartilage of outer ear" EXACT [OBOL:automatic]
synonym: "external ear cartilage" EXACT []
synonym: "outer ear cartilage" EXACT [OBOL:automatic]
xref: FMA:61339
xref: MA:0001886
xref: ncithesaurus:External_Ear_Cartilage
is_a: UBERON:0001996 ! elastic cartilage
is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue
relationship: part_of UBERON:0001691
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0001691 ! external ear
relationship: part_of UBERON:0001691 ! external ear
[Term]
id: UBERON:0001868
name: skin of chest
alt_id: UBERON:FMA_61415-MA_0000553
def: "A zone of skin that is part of a chest [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "anterior thoracic region zone of skin" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax zone of skin" EXACT [OBOL:automatic]
synonym: "chest skin" EXACT []
synonym: "chest zone of skin" EXACT [OBOL:automatic]
synonym: "front of thorax zone of skin" EXACT [OBOL:automatic]
synonym: "zone of skin of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "zone of skin of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "zone of skin of chest" EXACT [OBOL:automatic]
synonym: "zone of skin of front of thorax" EXACT [OBOL:automatic]
xref: FMA:61415
xref: FMA:61416
xref: MA:0000553
is_a: UBERON:0001418 ! skin of thorax
relationship: part_of UBERON:0001443
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0001869
name: cerebral hemisphere
alt_id: UBERON:FMA_61817-MA_0000133
def: "One of two bilateral, largely symmetrical organ subdivisions within the telencephalon which contain the cerebral cortex and cerebral white matter." [Wikipedia:Cerebral_hemisphere]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cerebrum" RELATED []
xref: BTO:0000231
xref: EFO:0002521
xref: FMA:61817
xref: galen:CerebralHemisphere
xref: HOG:0001639
xref: MA:0000133
xref: ncithesaurus:Cerebral_Hemisphere
xref: NIF_GrossAnatomy:birnlex_1042
xref: OpenCyc:Mx4rvigx5ZwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0001870
name: frontal cortex
alt_id: UBERON:FMA_61824-MA_0000905
def: "Frontal lobe is the anterior-most of five lobes of the cerebral hemisphere. It is bounded by the central sulcus on its posterior border and by the longitudinal cerebral fissure on its medial border." [Wikipedia:Frontal_lobe]
comment: Many species don't have lobes but they do have frontal cortex. Lobe isn't a really well defined term though [MM]
subset: uberon_slim
synonym: "frontal lobe" EXACT [FMA:61824]
synonym: "frontal region" EXACT []
xref: BTO:0000484
xref: EFO:0000913
xref: FMA:61824
xref: GAID:674
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Gray729.png/200px-Gray729.png
xref: MA:0000905
xref: MAT:0000505
xref: ncithesaurus:Frontal_Lobe
xref: NIF_GrossAnatomy:birnlex_928
xref: OpenCyc:Mx4rv3OJ8JwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: adjacent_to UBERON:0001871 ! temporal lobe
relationship: adjacent_to UBERON:0001872 ! parietal lobe
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0001871
name: temporal lobe
alt_id: UBERON:FMA_61825-MA_0000941
def: "Temporal lobe is the ventrolateral lobe of five lobes comprising each cerebral hemisphere. It is bounded dorsally by the lateral fissure and posteriorly by an arbitrary border shared with the occipital lobe." [Wikipedia:Temporal_lobe]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "temporal cortex" EXACT []
xref: BTO:0001355
xref: EFO:0000917
xref: FMA:61825
xref: GAID:635
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Gray730.png/200px-Gray730.png
xref: MA:0000941
xref: MAT:0000508
xref: ncithesaurus:Temporal_Lobe
xref: NIF_GrossAnatomy:birnlex_1160
xref: OpenCyc:Mx4rwQLi-ZwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0001872
name: parietal lobe
alt_id: UBERON:FMA_61826-MA_0000916
def: "Parietal lobe is the one of five lobes of the cerebral hemisphere which occupies the dorsal-posterior portion of the hemisphere. It is bounded by the central sulcus on its anterior border and and by the longitudinal cerebral fissure on its medial border. Posteriorly it shares an arbitrary border with the occipital lobe." [Wikipedia:Parietal_lobe]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "parietal cortex" EXACT []
synonym: "parietal region" EXACT []
xref: BTO:0001001
xref: EFO:0000914
xref: FMA:61826
xref: GAID:680
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b2/Gray726_parietal_lobe.png/200px-Gray726_parietal_lobe.png
xref: MA:0000916
xref: MAT:0000506
xref: ncithesaurus:Parietal_Lobe_of_the_Brain
xref: NIF_GrossAnatomy:birnlex_1148
xref: OpenCyc:Mx4rvg-typwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: adjacent_to UBERON:0001871 ! temporal lobe
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0001873
name: caudate nucleus
alt_id: UBERON:FMA_61833-MA_0000894
def: "Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent." [Wikipedia:Caudate_nucleus]
comment: CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM)
subset: uberon_slim
synonym: "caudatus" EXACT []
xref: BTO:0000211
xref: EFO:0000907
xref: FMA:61833
xref: GAID:670
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Telencephalon-Horiconatal.jpg/200px-Telencephalon-Horiconatal.jpg
xref: MA:0000894
xref: MAT:0000513
xref: ncithesaurus:Caudate_Nucleus
xref: NIF_GrossAnatomy:birnlex_1373
xref: OpenCyc:Mx4rvvyAjJwpEbGdrcN5Y29ycA
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0002435 ! striatum
[Term]
id: UBERON:0001874
name: putamen
alt_id: UBERON:FMA_61834-MA_0000895
def: "Nucleus of brain which lies ventral to the caudate nucleus and internal capsule and medial to the external capsule. The putamen and caudate nucleus together form the dorsal striatum. It is also one of the structures that comprises the basal ganglia. Through various pathways, the putamen is connected to the substantia nigra and globus pallidus. The main function of the putamen is to regulate movements and influence various types of learning. It employs dopamine to perform its functions. The putamen also plays a role in degenerative neurological disorders, such as Parkinson's disease." [Wikipedia:Putamen]
comment: CHECK - rodents. The caudate nucleus and putamen are separated by a clear white matter bundle in most species but not in rodents (MM)
subset: uberon_slim
synonym: "nucleus putamen" EXACT []
xref: FMA:61834
xref: GAID:671
xref: HOG:0001456
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/BrainCaudatePutamen.svg/200px-BrainCaudatePutamen.svg.png
xref: MA:0000895
xref: ncithesaurus:Putamen
xref: NIF_GrossAnatomy:birnlex_809
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0002435 ! striatum
[Term]
id: UBERON:0001875
name: globus pallidus
alt_id: UBERON:FMA_61835-MA_0000890
def: "Nucleus of brain which is located medially to the putamen and laterally to the internal capsule." [Wikipedia:Globus_pallidus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "paleostriatum" EXACT []
xref: BTO:0002246
xref: EFO:0000905
xref: FMA:61835
xref: GAID:668
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Brain_structure.gif/200px-Brain_structure.gif
xref: MA:0000890
xref: MAT:0000510
xref: ncithesaurus:Globus_Pallidus
xref: NIF_GrossAnatomy:birnlex_1234
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001876
name: amygdala
alt_id: UBERON:FMA_61841-MA_0000887-MIAA_0000289
def: "Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lobe[FMA]" [Wikipedia:Amygdala]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "amygdaloid area" RELATED []
synonym: "amygdaloid body" EXACT []
synonym: "amygdaloid complex" EXACT []
synonym: "amygdaloid nuclear complex" EXACT []
synonym: "amygdaloid nuclear groups" EXACT []
synonym: "amygdaloid nucleus" EXACT []
synonym: "archistriatum" EXACT []
xref: BTO:0001042
xref: EFO:0000252
xref: FMA:61841
xref: GAID:616
xref: HOG:0001277
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Amyg.png/200px-Amyg.png
xref: MA:0000887
xref: MAT:0000289
xref: MIAA:0000289
xref: ncithesaurus:Amygdala
xref: NIF_GrossAnatomy:birnlex_1241
xref: OpenCyc:Mx4rwJC_2ZwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000349 ! limbic system
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0002420 ! basal ganglion
[Term]
id: UBERON:0001877
name: medial septal nucleus
alt_id: UBERON:FMA_61879-MA_0000935
comment: This class was created automatically from a combination of ontologies
synonym: "medial parolfactory nucleus" EXACT []
xref: FMA:61879
xref: MA:0000935
xref: NIF_GrossAnatomy:birnlex_1668
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001878
name: septofimbrial nucleus
alt_id: UBERON:FMA_61881-MA_0000938
comment: This class was created automatically from a combination of ontologies
synonym: "scattered nucleus of the septum" EXACT []
xref: FMA:61881
xref: MA:0000938
xref: NIF_GrossAnatomy:birnlex_730
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001879
name: nucleus of diagonal band
alt_id: UBERON:FMA_61882-MA_0000936
comment: This class was created automatically from a combination of ontologies
synonym: "diagonal band nucleus" EXACT []
synonym: "nucleus of the diagonal band of broca" EXACT []
synonym: "olfactory area (roberts)" EXACT []
xref: FMA:61882
xref: MA:0000936
xref: NIF_GrossAnatomy:birnlex_719
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001880
name: bed nucleus of stria terminalis
alt_id: UBERON:FMA_61884-MA_0000925
def: "A brain structure in the forebrain wrapped around the stria terminalis. It's largest extent can be found around the crossing of the anterior commissure[INCF]." [INCF:Seattle_mtg_2010]
comment: This class was created automatically from a combination of ontologies
synonym: "BST" BROAD [INCF:Seattle_mtg_2010]
synonym: "intercalate nucleus of stria terminalis" EXACT []
synonym: "nuclei of stria terminalis" EXACT []
synonym: "nucleus of stria terminalis" EXACT [FMA:61884]
synonym: "stria terminalis nucleus" EXACT []
xref: BTO:0002698
xref: EFO:0001971
xref: FMA:61884
xref: MA:0000925
xref: NIF_GrossAnatomy:birnlex_724
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0000446 ! septum of telencephalon
relationship: surrounds UBERON:0003029 ! stria terminalis
[Term]
id: UBERON:0001881
name: island of calleja
alt_id: UBERON:FMA_61888-MA_0000977
def: "The islands of Calleja (IC, ISC, or IClj) are a group of neural granule cells located within the ventral striatum in the brains of most animals. This region of the brain is part of the limbic system, where it aids in the reinforcing effects of reward-like activities. Within most species, the islands are specifically located within the olfactory tubercle; however, in primates these islands are located within the nucleus accumbens, the reward center of the brain, since the olfactory tubercle has practically disappeared in the brains of primates. Both of these structures have been implicated in the processing of incentives as well as addictions to drugs. Projections to and from the islands supplement this knowledge with their involvement in the reward pathways for both cocaine and amphetamines. [WP,unvetted]." [Wikipedia:Islands_of_Calleja]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "calleja island" EXACT []
synonym: "islands of calleja" EXACT []
xref: FMA:61888
xref: GAID:632
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Islands_of_Calleja_Rat.jpg/200px-Islands_of_Calleja_Rat.jpg
xref: MA:0000977
xref: NIF_GrossAnatomy:birnlex_1113
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001883 ! anterior perforated substance
[Term]
id: UBERON:0001882
name: nucleus accumbens
alt_id: UBERON:FMA_61889-MA_0000892
def: "a collection of pleomorphic cells in the caudal part of the anterior horn of the lateral ventricle, in the region of the olfactory tubercle, lying between the head of the caudate nucleus and the anterior perforated substance. It is part of the ventral striatum, a composite structure considered part of the basal ganglia[GO]." [GO:0021768, Wikipedia:Nucleus_accumbens]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "accumbens nucleus" EXACT []
synonym: "colliculus of caudate nucleus" EXACT []
synonym: "nucleus accumbens septi" EXACT []
xref: BTO:0001862
xref: EFO:0000906
xref: FMA:61889
xref: GAID:672
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Circuit_du_syst%C3%A8me_de_recompense.jpg/200px-Circuit_du_syst%C3%A8me_de_recompense.jpg
xref: MA:0000892
xref: MAT:0000512
xref: ncithesaurus:Accumbens_Nucleus
xref: NIF_GrossAnatomy:birnlex_727
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0002435 ! striatum
[Term]
id: UBERON:0001883
name: anterior perforated substance
alt_id: UBERON:FMA_61891-MA_0000976
def: "Subdivision of telencephalon which is a region on the ventro-medial aspect of the telencephalon penetrated by numerous blood vessels. It is bounded by the optic tract posteriorly and the olfactory trigone anteriorly." [Wikipedia:Anterior_perforated_substance]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior perforated area" EXACT []
synonym: "anterior perforated space" EXACT []
synonym: "olfactory area (mai)" EXACT []
synonym: "olfactory tubercle" EXACT []
xref: BTO:0001869
xref: FMA:61891
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png
xref: MA:0000976
xref: NIF_GrossAnatomy:birnlex_1096
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001869 ! cerebral hemisphere
[Term]
id: UBERON:0001884
name: phrenic nerve
alt_id: UBERON:FMA_6191-MA_0001170
def: "The phrenic nerve arises from the third, fourth, and fifth cervical spinal nerves (C3-C5) in humans. [WP,unvetted]." [Wikipedia:Phrenic_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001063
xref: FMA:6191
xref: GAID:848
xref: HOG:0000728
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Gray806.png/200px-Gray806.png
xref: MA:0001170
xref: ncithesaurus:Phrenic_Nerve
xref: OpenCyc:Mx4rvtmdUJwpEbGdrcN5Y29ycA
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003443 ! implied link automatically realized ! thoracic cavity nerve
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0001885
name: dentate gyrus of hippocampal formation
alt_id: UBERON:FMA_61922-MA_0000190
def: "The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus[GO]." [Wikipedia:Dentate_gyrus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "area dentata" EXACT []
synonym: "dentate gyrus" EXACT []
synonym: "fascia dentata" EXACT []
xref: BTO:0002496
xref: EFO:0001366
xref: FMA:61922
xref: GAID:624
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/HippocampalRegions.jpg/200px-HippocampalRegions.jpg
xref: MA:0000190
xref: ncithesaurus:Dentate_Gyrus
xref: NIF_GrossAnatomy:birnlex_1178
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001954 ! hippocampus
relationship: part_of UBERON:0002421 ! hippocampal formation
[Term]
id: UBERON:0001886
name: choroid plexus
alt_id: UBERON:FMA_61934-MA_0000823-ZFA_0001443
def: "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier[?]. Fringe of the tela choroidea of the brain ventricles[MP]. The choroid plexus is the area on the ventricles of the brain where cerebrospinal fluid (CSF) is produced by modified ependymal cells[WP]." [MP:0000820, Wikipedia:Choroid_plexus, ZFIN:curator]
comment: TODO - check relationship to ventricle. Check subclass - ZFA says vasculature
subset: uberon_slim
synonym: "chorioid plexus of cerebral hemisphere" EXACT []
xref: BTO:0000258
xref: EFO:0001915
xref: FMA:61934
xref: GAID:607
xref: HOG:0001377
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Gray708.svg/200px-Gray708.svg.png
xref: MA:0000823
xref: ncithesaurus:Choroid_Plexus
xref: TAO:0001443
xref: ZFA:0001443
is_a: UBERON:0003947 ! implied link automatically realized ! brain ventricle/choroid plexus
is_a: UBERON:0005284 ! implied link automatically realized ! brain vasculature
is_a: UBERON:0005629 ! vascular plexus
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0004086 ! brain ventricle
[Term]
id: UBERON:0001887
name: internal capsule
alt_id: UBERON:FMA_61950-MA_0002748
def: "Internal capsule is an organ subdivision of the telencephalon which is made up primarily of myelinated axonal neural tissue (white matter). The internal capsule is a major set of fiber bundles lateral to the thalamus and caudate nucleus and medial to the putamen and globus pallidus. It projects dorsally to the white matter underlying the cerebral cortex." [Wikipedia:Internal_capsule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "internal capsule radiations" EXACT []
xref: FMA:61950
xref: GAID:685
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Telencephalon-Horiconatal.jpg/200px-Telencephalon-Horiconatal.jpg
xref: MA:0002748
xref: ncithesaurus:Internal_Capsule
xref: NIF_GrossAnatomy:birnlex_1659
is_a: UBERON:0002437 ! cerebral white matter
relationship: part_of UBERON:0001869 ! cerebral hemisphere
[Term]
id: UBERON:0001888
name: lateral olfactory stria
alt_id: UBERON:FMA_61971-ZFA_0000229
def: "The olfactory tract is a narrow white band, triangular on coronal section, the apex being directed upward. It lies in the olfactory sulcus on the inferior surface of the frontal lobe, and divides posteriorly into two striæ, a medial and a lateral. The lateral olfactory stria is directed across the lateral part of the anterior perforated substance and then bends abruptly medialward toward the uncus of the hippocampal gyrus. The medial olfactory stria turns medialward behind the parolfactory area and ends in the subcallosal gyrus; in some cases a small intermediate stria is seen running backward to the anterior perforated substance. [WP,unvetted]." [Wikipedia:Lateral_olfactory_stria]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateral olfactory tract" EXACT []
xref: FMA:61971
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png
xref: NIF_GrossAnatomy:birnlex_1559
xref: TAO:0000229
xref: ZFA:0000229
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0001889
name: trunk of phrenic nerve
alt_id: UBERON:FMA_6198-MA_0001177
comment: This class was created automatically from a combination of ontologies
synonym: "phrenic nerve trunk" EXACT []
synonym: "phrenic neural trunk" EXACT []
xref: EHDAA2:0001463
xref: FMA:6198
xref: MA:0001177
is_a: UBERON:0001147 ! trunk of peripheral nerve
relationship: part_of UBERON:0001884 ! phrenic nerve
[Term]
id: UBERON:0001890
name: forebrain
alt_id: UBERON:FMA_61992-MA_0000170-MIAA_0000105-XAO_0000011-ZFA_0000109
def: "Organ component of neuraxis that has as its parts the telencephalon, diencephalon, lateral ventricles and third ventricle. Examples: There is only one forebrain. // The most anterior region the brain including both the telencephalon and diencephalon. Kimmel et al, 1995." [Wikipedia:Forebrain, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "prosencephalon" RELATED []
xref: BTO:0000478
xref: EFO:0000909
xref: EHDAA:3470
xref: EHDAA2:0000556
xref: FMA:61992
xref: HOG:0000383
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png
xref: MA:0000170
xref: MAT:0000105
xref: MIAA:0000105
xref: NIF_GrossAnatomy:birnlex_1509
xref: TAO:0000109
xref: XAO:0000011
xref: ZFA:0000109
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002780 ! implied link automatically realized ! regional part of forebrain
relationship: develops_from UBERON:0003080 ! anterior neural tube
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0001891
name: midbrain
alt_id: UBERON:FMA_61993-MA_0000207-MIAA_0000106-XAO_0000014-ZFA_0000128
def: "Organ component of neuraxis that has as its parts the tectum, cerebral peduncle, midbrain tegmentum and cerebral aqueduct. Examples: There is only one midbrain. [FMA]. The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally[ZFA]. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles)[GO]." [GO:0030901, Wikipedia:Midbrain, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "mesencephalon" RELATED []
xref: BTO:0000138
xref: EFO:0000919
xref: EHDAA:3694
xref: EHDAA2:0001104
xref: EHDAA2:0001162
xref: FMA:61993
xref: HOG:0000069
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f9/Human_brain_inferior_view_description.JPG/200px-Human_brain_inferior_view_description.JPG
xref: MA:0000207
xref: MAT:0000106
xref: MIAA:0000106
xref: NIF_GrossAnatomy:birnlex_1667
xref: OpenCyc:Mx4rvsBUqpwpEbGdrcN5Y29ycA
xref: TAO:0000128
xref: XAO:0000014
xref: ZFA:0000128
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
relationship: develops_from UBERON:0003080 ! anterior neural tube
relationship: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0001892
name: rhombomere
alt_id: UBERON:FMA_61998-MIAA_0000272-ZFA_0001064
def: "A segment of the developing hindbrain[ZFA]. In the vertebrate embryo, a rhombomere is a transiently divided segment of the developing neural tube, within the hindbrain region (a neuromere) in the area that will eventually become the rhombencephalon. The rhombomeres appear as a series of slightly constricted swellings in the neural tube, caudal to the cephalic flexure. In human embryonic development, the rhombomeres are present by day 29[WP]." [Wikipedia:Rhombomere, ZFIN:curator]
subset: uberon_slim
synonym: "future rhombencephalon" RELATED [MIAA:0000272]
synonym: "hindbrain segment" BROAD [ZFA:0001064]
synonym: "rhombomere" EXACT []
synonym: "segment of hindbrain" BROAD [ZFA:0001064]
xref: EHDAA2:0000669
xref: HOG:0000672
xref: MAT:0000272
xref: MIAA:0000272
xref: TAO:0001064
xref: ZFA:0001064
is_a: UBERON:0004731 ! implied link automatically realized ! neuromere
is_a: UBERON:0004733 ! implied link automatically realized ! segmental subdivision of hindbrain
relationship: part_of UBERON:0002028
intersection_of: UBERON:0004731 ! neuromere
intersection_of: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0001893
name: telencephalon
alt_id: UBERON:FMA_6200-FMA_62000-MA_0000183-MIAA_0000421-XAO_0000012-ZFA_0000079
def: "Organ component of neuraxis that has as its parts the cerebral cortex, cerebral white matter, basal ganglia, septum and fornix, as well as subcortical gray and white matter structures. There is only one telencephalon. // The anterior and dorsal forebrain neuromere, includes the olfactory bulb. Kimmel et al, 1995." [Wikipedia:Telencephalon, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cerebrum" RELATED []
synonym: "endbrain" EXACT [Swanson:2004]
synonym: "telencephalic vesicle" RELATED []
synonym: "telencephalon" EXACT []
xref: BTO:0000239
xref: EFO:0000912
xref: EHDAA2:0001981
xref: FMA:62000
xref: GAID:621
xref: HOG:0000283
xref: MA:0000183
xref: MAT:0000421
xref: MIAA:0000421
xref: NIF_GrossAnatomy:birnlex_1115
xref: TAO:0000079
xref: XAO:0000012
xref: ZFA:0000079
is_a: UBERON:0002780 ! regional part of forebrain
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0001894
name: diencephalon
alt_id: UBERON:FMA_62001-MA_0000171-MIAA_0000420-XAO_0000013-ZFA_0000101
def: "Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus. There is only one diencephalon. // The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995." [Wikipedia:Diencephalon, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "between brain" EXACT []
synonym: "interbrain" EXACT [Swanson:2004]
synonym: "mature diencephalon" EXACT []
xref: BTO:0000342
xref: EFO:0000911
xref: EHDAA:1969
xref: EHDAA:2645
xref: EHDAA:3472
xref: EHDAA2:0000385
xref: FMA:62001
xref: GAID:618
xref: HOG:0000318
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png
xref: MA:0000171
xref: MAT:0000420
xref: MIAA:0000420
xref: ncithesaurus:Diencephalon
xref: NIF_GrossAnatomy:birnlex_1503
xref: OpenCyc:Mx4rwC-V0JwpEbGdrcN5Y29ycA
xref: TAO:0000101
xref: XAO:0000013
xref: ZFA:0000101
is_a: UBERON:0002780 ! regional part of forebrain
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0001895
name: metencephalon
alt_id: UBERON:FMA_62003-MA_0000197
def: "Rostral segment of the hindbrain that has as its parts the pons and the cerebellum." [Wikipedia:Metencephalon]
comment: the terms metencephalon and myelencephalon are only meaningful in mammals and birds - Neuroanatomy of the Zebrafish Brain
subset: uberon_slim
synonym: "epencephalon-2" EXACT []
xref: BTO:0000673
xref: EHDAA:5498
xref: EHDAA2:0001149
xref: FMA:62003
xref: GAID:594
xref: HOG:0000741
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png
xref: MA:0000197
xref: NIF_GrossAnatomy:birnlex_965
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
is_a: UBERON:0004733 ! implied link automatically realized ! segmental subdivision of hindbrain
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0001896
name: medulla oblongata
alt_id: UBERON:FMA_62004-MA_0000206-MIAA_0000111-XAO_0003100-ZFA_0000545
def: "Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures. Examples: There is only one medulla oblongata[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, Wikipedia:Medulla_oblongata]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "brainstem" RELATED []
synonym: "bulb" EXACT []
synonym: "medulla oblonmgata" EXACT []
synonym: "metepencephalon" EXACT []
xref: BTO:0000041
xref: BTO:0000159
xref: EFO:0000924
xref: EHDAA:7588
xref: EHDAA2:0001088
xref: FMA:62004
xref: GAID:590
xref: HOG:0000181
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Illu_pituitary_pineal_glands.jpg/200px-Illu_pituitary_pineal_glands.jpg
xref: MA:0000206
xref: MAT:0000111
xref: MAT:0000367
xref: MIAA:0000111
xref: ncithesaurus:Medulla_Oblongata
xref: NIF_GrossAnatomy:birnlex_957
xref: OpenCyc:Mx4rvVjxSJwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rwCqnXJwpEbGdrcN5Y29ycA
xref: TAO:0000545
xref: XAO:0003100
xref: ZFA:0000545
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002028 ! hindbrain
relationship: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0001897
name: thalamus
alt_id: UBERON:FMA_62007-MA_0000179-MIAA_0000109-ZFA_0001215
def: "A midline paired symmetrical structure within the brains of vertebrates, including humans. It is situated between the cerebral cortex and midbrain, both in terms of location and neurological connections. Its function includes relaying sensation, special sense and motor signals to the cerebral cortex, along with the regulation of consciousness, sleep and alertness. The thalamus surrounds the third ventricle. It is the main product of the embryonic diencephalon." [Wikipedia:Thalamus]
comment: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym
subset: uberon_slim
synonym: "dorsal thalamus" RELATED [FMA:62007]
synonym: "dorsal thalamus (anthoney)" EXACT [FMA:62007]
xref: BTO:0001365
xref: EFO:0000910
xref: FMA:62007
xref: GAID:656
xref: galen:Thalamus
xref: HOG:0000657
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ce/Brain_chrischan_thalamus.jpg/200px-Brain_chrischan_thalamus.jpg
xref: MA:0000179
xref: MAT:0000109
xref: MIAA:0000109
xref: ncithesaurus:Thalamus
xref: NIF_GrossAnatomy:birnlex_954
xref: OpenCyc:Mx4rwMPQ65wpEbGdrcN5Y29ycA
xref: TAO:0001215
xref: ZFA:0001215
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001898
name: hypothalamus
alt_id: UBERON:FMA_62008-MA_0000173-MIAA_0000112-ZFA_0000032
def: "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. [ZFA]. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis).[Wikipedia]." [Wikipedia:Hypothalamus, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "preoptico-hypothalamic area" EXACT []
synonym: "preoptico-hypothalamic region" EXACT []
xref: BTO:0000614
xref: EFO:0000107
xref: EHDAA:5446
xref: EHDAA2:0000802
xref: FMA:62008
xref: GAID:460
xref: galen:Hypothalamus
xref: HOG:0000179
xref: MA:0000173
xref: MAT:0000112
xref: MIAA:0000112
xref: ncithesaurus:Hypothalamus
xref: NIF_GrossAnatomy:birnlex_734
xref: OpenCyc:Mx4rwEgr9JwpEbGdrcN5Y29ycA
xref: TAO:0000032
xref: ZFA:0000032
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000349 ! limbic system
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001899
name: epithalamus
alt_id: UBERON:FMA_62009-MA_0000172-MIAA_0000422-ZFA_0000509
def: "The epithalamus is the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle[GO]. a dorsal posterior segment of the diencephalon (a segment in the middle of the brain also containing the hypothalamus and the thalamus) which includes the habenula, the stria medullaris and the pineal body. Its function is the connection between the limbic system to other parts of the brain[WP] Some functions of its components include the secretion of melatonin by the pineal gland. " [Wikipedia:Epithalamus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000175
xref: EFO:0000918
xref: EHDAA:5433
xref: EHDAA2:0000448
xref: FMA:62009
xref: GAID:455
xref: HOG:0000178
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Epithalamus.png/200px-Epithalamus.png
xref: MA:0000172
xref: MAT:0000422
xref: MIAA:0000422
xref: ncithesaurus:Epithalamus
xref: NIF_GrossAnatomy:birnlex_1710
xref: OpenCyc:Mx4rvneLQpwpEbGdrcN5Y29ycA
xref: TAO:0000509
xref: ZFA:0000509
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001900
name: subthalamus
alt_id: UBERON:FMA_62010-MA_0000181-ZFA_0000458
def: "Anterior part of the diencephalon that lies between the thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis." [GO:0021539, Wikipedia:Subthalamus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "prethalamus" RELATED []
synonym: "subthalamic region" EXACT []
synonym: "ventral thalamus" EXACT []
xref: FMA:62010
xref: GAID:653
xref: MA:0000181
xref: ncithesaurus:Ventral_Thalamus
xref: NIF_GrossAnatomy:birnlex_708
xref: TAO:0000458
xref: ZFA:0000458
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0001901
name: epithelium of trachea
alt_id: UBERON:0003227
alt_id: UBERON:FMA_62015-MA_0001862
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of trachea" EXACT [OBOL:automatic]
synonym: "epithelial tissue of windpipe" EXACT [OBOL:automatic]
synonym: "epithelium of windpipe" EXACT [OBOL:automatic]
synonym: "trachea epithelial tissue" EXACT [OBOL:automatic]
synonym: "trachea epithelium" EXACT []
synonym: "tracheal epithelium" EXACT []
synonym: "windpipe epithelial tissue" EXACT [OBOL:automatic]
synonym: "windpipe epithelium" EXACT [OBOL:automatic]
xref: BTO:0001389
xref: EHDAA:5007
xref: EHDAA2:0002069
xref: FMA:62015
xref: HOG:0001045
xref: MA:0001862
xref: ncithesaurus:Tracheal_Epithelium
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0004815 ! implied link automatically realized ! lower respiratory tract epithelium
relationship: part_of UBERON:0003126
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003126 ! trachea
relationship: develops_from UBERON:0003258 ! endoderm of foregut
[Term]
id: UBERON:0001902
name: epithelium of small intestine
alt_id: UBERON:FMA_62017-MA_0001553
def: "An epithelium that is part of a small intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of small bowel" EXACT [OBOL:automatic]
synonym: "epithelial tissue of small intestine" EXACT [OBOL:automatic]
synonym: "epithelium of small bowel" EXACT [OBOL:automatic]
synonym: "small bowel epithelial tissue" EXACT [OBOL:automatic]
synonym: "small bowel epithelium" EXACT [OBOL:automatic]
synonym: "small intestinal epithelium" EXACT []
synonym: "small intestine epithelial tissue" EXACT [OBOL:automatic]
synonym: "small intestine epithelium" EXACT []
xref: BTO:0001258
xref: FMA:62017
xref: MA:0001553
xref: ZFA:0005127
is_a: UBERON:0001277 ! intestinal epithelium
relationship: part_of UBERON:0002108
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001204 ! mucosa of small intestine
[Term]
id: UBERON:0001903
name: thalamic reticular nucleus
alt_id: UBERON:FMA_62026-MA_0000876
def: "The thalamic reticular nucleus is part of the ventral thalamus that forms a capsule around the thalamus laterally. It is separated from the thalamus by the external medullary lamina. Reticular cells are GABAergic, and have discoid dendritic arbors in the plane of the nucleus. Thalamic Reticular Nucleus is variously abbreviated TRN, RTN, NRT, and RT. [WP,unvetted]." [Wikipedia:Thalamic_reticular_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "reticular nuclear group" EXACT []
synonym: "reticular nucleus of thalamus" EXACT []
synonym: "reticular nucleus of the thalamus" EXACT []
synonym: "reticular nucleus-2" EXACT []
synonym: "reticular thalamic nucleus" EXACT []
xref: FMA:62026
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Constudthal.gif/200px-Constudthal.gif
xref: MA:0000876
xref: NIF_GrossAnatomy:birnlex_1721
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
relationship: part_of UBERON:0001900 ! subthalamus
[Term]
id: UBERON:0001904
name: habenula
alt_id: UBERON:FMA_62032-MA_0000830-ZFA_0000213
def: "Habenula is a segment of the epithalamus that has as its parts the lateral and medial habenular nuclei and the habenular commissure. // The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus." [Wikipedia:Habenula, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "habenulae" RELATED []
synonym: "habenular nuclei" RELATED []
synonym: "habenular nucleus" RELATED []
xref: BTO:0003684
xref: FMA:62032
xref: GAID:619
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray715.png/200px-Gray715.png
xref: MA:0000830
xref: NIF_GrossAnatomy:birnlex_1611
xref: TAO:0000213
xref: ZFA:0000213
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001899 ! epithalamus
[Term]
id: UBERON:0001905
name: pineal body
alt_id: UBERON:FMA_62033-MA_0000175-XAO_0000160
def: "Pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus." [Wikipedia:Pineal_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "corpus pineale" RELATED []
synonym: "epiphysis" RELATED [ZFA:0000019]
synonym: "epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri]
synonym: "pineal gland" EXACT []
xref: BTO:0001067
xref: EFO:0000865
xref: EHDAA:7523
xref: EHDAA2:0001466
xref: FMA:62033
xref: GAID:453
xref: galen:PinealGland
xref: HOG:0000051
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Illu_pituitary_pineal_glands.jpg/200px-Illu_pituitary_pineal_glands.jpg
xref: MA:0000175
xref: MAT:0000448
xref: ncithesaurus:Pineal_Gland
xref: NIF_GrossAnatomy:birnlex_1184
xref: OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA
xref: XAO:0000160
xref: ZFA:0000019
is_a: UBERON:0002368 ! implied link automatically realized ! endocrine gland
is_a: UBERON:0002530 ! gland
is_a: UBERON:0003296 ! implied link automatically realized ! gland of diencephalon
relationship: part_of UBERON:0000949 ! endocrine system
relationship: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001899 ! epithalamus
[Term]
id: UBERON:0001906
name: subthalamic nucleus
alt_id: UBERON:FMA_62035-MA_0000877
def: "The subthalamic nucleus is the lens-shaped nucleus located in the ventral part of the subthalamus on the inner aspect of the internal capsule that is concerned with the integration of somatic motor function[GO]." [Wikipedia:Subthalamic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "body of forel" EXACT []
synonym: "body of luys" EXACT []
synonym: "nucleus of corpus luysii" EXACT []
synonym: "nucleus of luys" EXACT []
synonym: "subthalamic nucleus (of luys)" EXACT []
xref: BTO:0002252
xref: EFO:0001392
xref: FMA:62035
xref: GAID:655
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Basal-ganglia-coronal-sections-large.png/200px-Basal-ganglia-coronal-sections-large.png
xref: MA:0000877
xref: ncithesaurus:Subthalamic_Nucleus
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
relationship: part_of UBERON:0001900 ! subthalamus
[Term]
id: UBERON:0001907
name: zona incerta
alt_id: UBERON:FMA_62038-MA_0000878
def: "The zona incerta is a horizontally elongated region of gray matter cells in the subthalamus below the thalamus. Its connections project extensively over the brain from the cerebral cortex down into the spinal cord. Its function is unknown though several have been proposed related to “limbic–motor integration” such as controlling visceral activity and pain; gating sensory input and synchronizing cortical and subcortical brain rhythms. Its dysfunction may play a role in central pain syndrome. It is also been identified as a promising deep brain stimulation therapy target for treating Parkinsons Disease. Its existence was first described by Auguste Forel in 1877 as a “region of which nothing certain can be said”. A hundred and thirty years later in 2007, Nadia Urbain and Martin Deschênes of Université Laval noted that the “zona incerta is among the least studied regions of the brain; its name does not even appear in the index of many textbooks. ” [WP,unvetted]." [Wikipedia:Zona_incerta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003146
xref: FMA:62038
xref: MA:0000878
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
relationship: part_of UBERON:0001900 ! subthalamus
[Term]
id: UBERON:0001908
name: optic tract
alt_id: UBERON:FMA_62046-ZFA_0000252
def: "Nerve trunk which is continuous with the optic chiasm and the lateral geniculate nucleus. // Axon tract which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm." [Wikipedia:Optic_tract, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "axon tract of eye" EXACT [OBOL:automatic]
synonym: "eye axon tract" EXACT [OBOL:automatic]
synonym: "eye tract" EXACT [OBOL:automatic]
synonym: "optic lemniscus" EXACT []
synonym: "tract of eye" EXACT [OBOL:automatic]
xref: FMA:62046
xref: HOG:0001164
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Gray773.png/200px-Gray773.png
xref: MA:0001099
xref: ncithesaurus:Optic_Tract
xref: NIF_GrossAnatomy:birnlex_1684
xref: TAO:0000252
xref: ZFA:0000252
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0001018 ! implied link automatically realized ! axon tract
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000970
intersection_of: UBERON:0001018 ! axon tract
intersection_of: part_of UBERON:0000970 ! eye
relationship: continuous_with UBERON:0000959 ! optic chiasma
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001909
name: habenular commissure
alt_id: UBERON:FMA_62048-ZFA_0000359
def: "The habenular commissure, is a brain commissure (a band of nerve fibers) situated in front of the pineal gland that connects the habenular nucleus on one side of the diencephalon with that on the other side. The habernular commissure is part of the trigonum habenulæ (a small depressed triangular area situated in front of the superior colliculus and on the lateral aspect of the posterior part of the tænia thalami). The trigonum habenulæ also contains groups of nerve cells termed the ganglion habenulæ. Fibers enter the trigonum habenulæ from the stalk of the pineal gland, and the habenular commissure. Most of the trigonum habenulæ's fibers are, however, directed downward and form a bundle, the fasciculus retroflexus of Meynert, which passes medial to the red nucleus, and, after decussating with the corresponding fasciculus of the opposite side, ends in the interpeduncular ganglion. Nerve cell fibers enter the trigonum habenulæ from the stalk of the pineal body, and the habernular commissure. [WP,unvetted]." [Wikipedia:Habenular_commissure]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:62048
xref: NIF_GrossAnatomy:birnlex_1609
xref: TAO:0000359
xref: ZFA:0000359
is_a: UBERON:0001020 ! commissure
is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus
is_a: UBERON:0005970 ! implied link automatically realized ! brain commissure
relationship: part_of UBERON:0001904 ! habenula
[Term]
id: UBERON:0001910
name: medial forebrain bundle
alt_id: UBERON:FMA_62064-ZFA_0005111
def: "The Medial forebrain bundle (MFB), is a complex bundle of axons coming from the basal olfactory regions, the periamygdaloid region, and the septal nuclei, and passing to the lateral hypothalamus, with some carrying on into the tegmentum. It contains both ascending and descending fibers. It also represents a part of the mesolimbic pathway, carrying information between the ventral tegmentum and the nucleus accumbens. It is commonly accepted that the MFB is a part of the reward system, involved in the integration of reward and pleasure. Electrical stimulation of the medial forebrain bundle is believed to cause sensations of pleasure. This hypothesis is based upon intracranial self-stimulation (ICSS) studies. Animals will work for MFB ICSS, and humans report that MFB ICSS is intensely pleasurable. This is most likely because the medial forebrain bundle carries information from the ventral tegmental area (VTA) to the nucleus accumbens (nAcc or Acb). The nAcc is a recognized reward center, and activation of the pathway from the VTA to the nAcc is believed to be rewarding, which is why it is sometimes referred to as the hedonic highway. [WP,unvetted]." [Wikipedia:Medial_forebrain_bundle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "medial forebrain fasciculus" EXACT []
synonym: "telencephalic medial fasciculus" EXACT []
xref: FMA:62064
xref: GAID:736
xref: ncithesaurus:Medial_Forebrain_Bundle
xref: NIF_GrossAnatomy:birnlex_908
xref: TAO:0005111
xref: ZFA:0005111
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0001911
name: mammary gland
alt_id: UBERON:FMA_62088-MA_0000145-MIAA_0000073-Mammary
def: "Lobular organ which consist of a lactiferous duct tree and the set of lactiferous acini that are connected to duct tree. Examples: There are variable numbers of lactiferous duct trees." [Wikipedia:Mammary_gland]
comment: TODO - part_of such that applies to all mammals
subset: uberon_slim
synonym: "lactiferous gland" EXACT [FMA:62088]
synonym: "lobe of breast" EXACT []
synonym: "lobe of mammary gland" EXACT []
xref: BTO:0000817
xref: EFO:0000854
xref: EHDAA:6524
xref: EHDAA2:0001056
xref: FMA:62088
xref: HOG:0000398
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Illu_breast_anatomy.jpg/200px-Illu_breast_anatomy.jpg
xref: MA:0000145
xref: MAT:0000073
xref: MIAA:0000073
xref: ncithesaurus:Mammary_Gland
xref: OpenCyc:Mx4rvVjVq5wpEbGdrcN5Y29ycA
is_a: UBERON:0002530 ! gland
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0005333 ! mammary bud
relationship: secretes UBERON:0001913 ! milk
[Term]
id: UBERON:0001912
name: lobule of lactiferous gland
alt_id: UBERON:FMA_62090-MA_0000793
def: "Organ component of the mammary gland which consists of an aggregate of mammary alveoli that communicate with a lobular lactiferous duct." []
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "acinus of mammary gland" EXACT []
synonym: "lactiferous acinus" EXACT []
synonym: "lactiferous gland lobule" EXACT []
synonym: "lactiferous lobule" EXACT []
synonym: "lobule of mammary gland" EXACT []
synonym: "mammary acinus" EXACT []
synonym: "mammary gland lobule" EXACT []
xref: FMA:62090
xref: MA:0000793
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0001913
name: milk
alt_id: UBERON:FMA_62100-MA_0002552-MIAA_0000056
def: "Secretion produced by the mammary gland." [Wikipedia:Breast_milk]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "mammary gland milk" EXACT []
xref: BTO:0000868
xref: ENVO:02000031
xref: FMA:62100
xref: GAID:1230
xref: galen:Milk
xref: HOG:0001263
xref: MA:0002552
xref: MAT:0000056
xref: MIAA:0000056
xref: ncithesaurus:Milk
xref: OpenCyc:Mx4rvVjGZJwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001914
name: colostrum
alt_id: UBERON:FMA_62101-MA_0002551
def: "Milk produced by the mammary glands of mammals in late pregnancy. Most species will generate colostrum within one day of giving birth." [Wikipedia:Colostrum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000276
xref: FMA:62101
xref: GAID:1159
xref: MA:0002551
xref: ncithesaurus:Colostrum
is_a: UBERON:0001913 ! milk
[Term]
id: UBERON:0001915
name: endothelium of capillary
alt_id: UBERON:FMA_62114-MA_0000711
def: "An endothelium that is part of a capillary [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "blood capillary endothelium" EXACT [OBOL:automatic]
synonym: "capillary endothelium" EXACT []
synonym: "capillary vessel endothelium" EXACT [OBOL:automatic]
synonym: "endothelium of blood capillary" EXACT [OBOL:automatic]
synonym: "endothelium of capillary vessel" EXACT [OBOL:automatic]
xref: FMA:62114
xref: MA:0000711
xref: ncithesaurus:Capillary_Endothelium
is_a: UBERON:0001986 ! endothelium
is_a: UBERON:0004638 ! implied link automatically realized ! blood vessel endothelium
relationship: part_of UBERON:0001982
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001982 ! capillary
relationship: part_of UBERON:0001982 ! capillary
[Term]
id: UBERON:0001916
name: endothelium of arteriole
alt_id: UBERON:FMA_62115-MA_0000705
def: "An endothelium that is part of an arteriole [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "arteriole endothelium" EXACT []
xref: FMA:62115
xref: MA:0000705
xref: ncithesaurus:Arteriole_Endothelium
is_a: UBERON:0001917 ! implied link automatically realized ! endothelium of artery
is_a: UBERON:0001986 ! endothelium
relationship: part_of UBERON:0001980
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001980 ! arteriole
relationship: part_of UBERON:0001980 ! arteriole
[Term]
id: UBERON:0001917
name: endothelium of artery
alt_id: UBERON:FMA_62116-MA_0000707-XAO_0000357
def: "An endothelium that is part of an artery [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "arterial endothelium" EXACT []
synonym: "artery endothelium" EXACT []
xref: FMA:62116
xref: HOG:0001215
xref: MA:0000707
xref: ncithesaurus:Artery_Endothelium
xref: XAO:0000357
is_a: UBERON:0001986 ! endothelium
is_a: UBERON:0004638 ! implied link automatically realized ! blood vessel endothelium
is_a: UBERON:0004700 ! implied link automatically realized ! arterial system endothelium
relationship: part_of UBERON:0001637
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001637 ! artery
[Term]
id: UBERON:0001918
name: endothelium of venule
alt_id: UBERON:FMA_62117-MA_0000716
def: "An endothelium that is part of a venule [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "venule endothelium" EXACT []
xref: FMA:62117
xref: MA:0000716
xref: ncithesaurus:Venule_Endothelium
is_a: UBERON:0001986 ! endothelium
is_a: UBERON:0004638 ! implied link automatically realized ! blood vessel endothelium
is_a: UBERON:0004701 ! implied link automatically realized ! venous system endothelium
relationship: part_of UBERON:0001979
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001979 ! venule
relationship: part_of UBERON:0001979 ! venule
[Term]
id: UBERON:0001919
name: endothelium of vein
alt_id: UBERON:FMA_62118-MA_0000712
def: "An endothelium that is part of a vein [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "vein endothelium" EXACT []
synonym: "venous endothelium" EXACT []
xref: FMA:62118
xref: HOG:0001216
xref: MA:0000712
xref: ncithesaurus:Vein_Endothelium
xref: XAO:0000358
is_a: UBERON:0001986 ! endothelium
is_a: UBERON:0004638 ! implied link automatically realized ! blood vessel endothelium
is_a: UBERON:0004701 ! implied link automatically realized ! venous system endothelium
relationship: part_of UBERON:0001638
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001638 ! vein
[Term]
id: UBERON:0001920
name: paraventricular nucleus of thalamus
alt_id: UBERON:FMA_62152-MA_0000866
def: "The paraventricular nucleus (PVN) is a neuronal nucleus in the hypothalamus. It contains multiple subpopulations of neurons that are activated by a variety of stressful and/or physiological changes. Many PVH neurons project directly to the posterior pituitary where they release oxytocin or vasopressin into the general circulation. Other PVN neurons control various anterior pituitary functions, while still others directly regulate appetite and autonomic functions in the brainstem and spinal cord. [WP,unvetted]." [Wikipedia:Paraventricular_nuclei]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dorsal thalamus (anthoney) filiform nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) paraventricular hypothalamic nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) paraventricular nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) paraventricular nucleus of hypothalamus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus filiform nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus paraventricular hypothalamic nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus paraventricular nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus paraventricular nucleus of hypothalamus" EXACT [OBOL:automatic]
synonym: "filiform nucleus of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "filiform nucleus of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "filiform nucleus of thalamus" EXACT [OBOL:automatic]
synonym: "paraventricular gray" EXACT []
synonym: "paraventricular hypothalamic nucleus of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "paraventricular hypothalamic nucleus of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "paraventricular hypothalamic nucleus of thalamus" EXACT [OBOL:automatic]
synonym: "paraventricular nuclei" EXACT []
synonym: "paraventricular nuclei of thalamus" EXACT []
synonym: "paraventricular nucleus of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "paraventricular nucleus of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "paraventricular nucleus of hypothalamus of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "paraventricular nucleus of hypothalamus of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "paraventricular nucleus of hypothalamus of thalamus" EXACT [OBOL:automatic]
synonym: "paraventricular thalamic nucleus" EXACT []
synonym: "thalamus filiform nucleus" EXACT [OBOL:automatic]
synonym: "thalamus paraventricular hypothalamic nucleus" EXACT [OBOL:automatic]
synonym: "thalamus paraventricular nucleus" EXACT [OBOL:automatic]
synonym: "thalamus paraventricular nucleus of hypothalamus" EXACT [OBOL:automatic]
xref: FMA:62152
xref: http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg
xref: MA:0000866
xref: NIF_GrossAnatomy:birnlex_764
is_a: UBERON:0001930 ! paraventricular nucleus of hypothalamus
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
relationship: part_of UBERON:0001897
intersection_of: UBERON:0001930 ! paraventricular nucleus of hypothalamus
intersection_of: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0001921
name: reuniens nucleus
alt_id: UBERON:FMA_62153-MA_0000865
comment: This class was created automatically from a combination of ontologies
synonym: "medioventral nucleus" EXACT []
synonym: "nucleus reuniens" EXACT []
synonym: "reuniens thalamic nucleus" EXACT []
xref: BTO:0002459
xref: FMA:62153
xref: MA:0000865
xref: NIF_GrossAnatomy:birnlex_770
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001922
name: parafascicular nucleus
alt_id: UBERON:FMA_62166-MA_0000874
comment: This class was created automatically from a combination of ontologies
synonym: "parafascicular nucleus of thalamus" EXACT []
synonym: "parafascicular thalamic nucleus" EXACT []
xref: FMA:62166
xref: MA:0000874
xref: NIF_GrossAnatomy:birnlex_952
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001923
name: central medial nucleus
alt_id: UBERON:FMA_62171-MA_0000872
def: "a small cell group in the interthalamic adhesion of the thalamus that occupy the midline region of the internal medullary lamina, between the left and right paracentral nuclei." [MP:0008929]
comment: This class was created automatically from a combination of ontologies
synonym: "central medial nucleus of thalamus" EXACT []
synonym: "central medial thalamic nucleus" EXACT []
xref: BTO:0003753
xref: FMA:62171
xref: MA:0000872
xref: NIF_GrossAnatomy:birnlex_971
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001924
name: paracentral nucleus
alt_id: UBERON:FMA_62172-MA_0000873
def: "one of the intralaminar nuclei of the thalamus, located medial to the central lateral nucleus." [MP:0008928]
comment: This class was created automatically from a combination of ontologies
synonym: "paracentral nucleus of thalamus" EXACT []
synonym: "paracentral thalamic nucleus" EXACT []
xref: FMA:62172
xref: MA:0000873
xref: NIF_GrossAnatomy:birnlex_981
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001925
name: ventral lateral nucleus
alt_id: UBERON:FMA_62186-ZFA_0000306
def: "The ventral lateral nucleus (VL) is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_lateral_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateral ventral nucleus of thalamus" EXACT []
synonym: "ventral lateral complex of thalamus" EXACT []
synonym: "ventral lateral nucleus of thalamus" EXACT []
synonym: "ventral lateral thalamic nuclei" EXACT []
synonym: "ventrolateral thalamic nucleus" EXACT []
xref: BTO:0002463
xref: FMA:62186
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: NIF_GrossAnatomy:birnlex_1237
xref: TAO:0000306
xref: ZFA:0000306
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
relationship: part_of UBERON:0001900 ! subthalamus
[Term]
id: UBERON:0001926
name: lateral geniculate body
alt_id: UBERON:FMA_62209-MA_0000869
def: "The lateral geniculate nucleus is the primary processor of visual information received from the retina[GO]." [Wikipedia:Lateral_geniculate_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateral geniculate complex" EXACT []
synonym: "lateral geniculate nucleus" EXACT []
xref: EFO:0001988
xref: FMA:62209
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray719.png/200px-Gray719.png
xref: MA:0000869
xref: NIF_GrossAnatomy:birnlex_1662
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0001927
name: medial geniculate body
alt_id: UBERON:FMA_62211-MA_0000870
def: "The Medial Geniculate Nucleus (MGN) or Medial Geniculate Body (MGB) is part of the auditory thalamus and represents the thalamic relay between the inferior colliculus (IC) and the auditory cortex (AC). It is made up of a number of sub-nuclei that are distinguished by their neuronal morphology and density, by their afferent and efferent connections, and by the coding properties of their neurons. It is thought that the MGB influences the direction and maintenance of attention. [WP,unvetted]." [Wikipedia:Medial_geniculate_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "medial geniculate complex" EXACT []
synonym: "medial geniculate nuclei" EXACT []
synonym: "medial geniculate nucleus" EXACT []
xref: BTO:0002674
xref: EFO:0001968
xref: FMA:62211
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: MA:0000870
xref: NIF_GrossAnatomy:birnlex_1670
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001928
name: preoptic area
alt_id: UBERON:FMA_62313-ZFA_0000470
def: "Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus[ZFA]." [Wikipedia:Preoptic_area, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "area praeoptica" RELATED []
synonym: "area preoptica" RELATED []
synonym: "preoptic nuclei" EXACT []
synonym: "preoptic region" RELATED []
synonym: "preoptic region of hypothalamus" EXACT []
xref: BTO:0001796
xref: EFO:0002523
xref: FMA:62313
xref: GAID:644
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: NIF_GrossAnatomy:birnlex_1706
xref: TAO:0000470
xref: ZFA:0000470
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001929
name: supraoptic nucleus
alt_id: UBERON:FMA_62317-MA_0000849
def: "The supraoptic nucleus (SON) is a nucleus of magnocellular neurosecretory cells in the hypothalamus of the mammalian brain. The nucleus is situated at the base of the brain, adjacent to the optic chiasm. In humans, it contains about 3,000 neurons. [WP,unvetted]." [Wikipedia:Supraoptic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "supra-optic nucleus" EXACT []
synonym: "supraoptic nucleus of hypothalamus" EXACT []
xref: BTO:0002697
xref: EFO:0002476
xref: FMA:62317
xref: GAID:646
xref: http://upload.wikimedia.org/wikipedia/en/thumb/d/d7/SONss.jpg/200px-SONss.jpg
xref: MA:0000849
xref: NIF_GrossAnatomy:birnlex_1411
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus
[Term]
id: UBERON:0001930
name: paraventricular nucleus of hypothalamus
alt_id: UBERON:FMA_62320-MA_0000848
def: "The paraventricular nucleus (PVN) is a neuronal nucleus in the hypothalamus. It contains multiple subpopulations of neurons that are activated by a variety of stressful and/or physiological changes. Many PVH neurons project directly to the posterior pituitary where they release oxytocin or vasopressin into the general circulation. Other PVN neurons control various anterior pituitary functions, while still others directly regulate appetite and autonomic functions in the brainstem and spinal cord. [WP,unvetted]." [Wikipedia:Paraventricular_nucleus_of_hypothalamus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "filiform nucleus" EXACT []
synonym: "paraventricular hypothalamic nucleus" EXACT []
synonym: "paraventricular nucleus" EXACT []
xref: BTO:0002476
xref: EFO:0002469
xref: FMA:62320
xref: GAID:643
xref: http://upload.wikimedia.org/wikipedia/en/thumb/e/ef/PVNss.jpg/200px-PVNss.jpg
xref: MA:0000848
xref: NIF_GrossAnatomy:birnlex_1407
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus
[Term]
id: UBERON:0001931
name: lateral preoptic nucleus
alt_id: UBERON:FMA_62326-MA_0000835
def: "The preoptic area is a region of the hypothalamus. According to the MeSH classification, it is considered part of the anterior hypothalamus. [WP,unvetted]." [Wikipedia:Lateral_preoptic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateral preoptic area" EXACT []
synonym: "lateral preoptic hypothalamic nucleus" EXACT []
xref: FMA:62326
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MA:0000835
xref: NIF_GrossAnatomy:birnlex_1722
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus
[Term]
id: UBERON:0001932
name: arcuate nucleus of hypothalamus
alt_id: UBERON:FMA_62329-MA_0000847
def: "The arcuate nucleus (or infundibular nucleus) is an aggregation of neurons in the mediobasal hypothalamus, adjacent to the third ventricle and the median eminence. The arcuate nucleus includes several important populations of neurons, including: Neuroendocrine neurons, Centrally-projecting neurons and Others. [WP,unvetted]." [Wikipedia:Arcuate_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arcuate hypothalamic nucleus" EXACT []
synonym: "arcuate nucleus" EXACT []
synonym: "arcuate nucleus-2" EXACT []
synonym: "arcuate periventricular nucleus" EXACT []
synonym: "infundibular hypothalamic nucleus" EXACT []
synonym: "infundibular nucleus" EXACT []
synonym: "infundibular periventricular nucleus" EXACT []
xref: BTO:0002473
xref: FMA:62329
xref: GAID:647
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MA:0000847
xref: ncithesaurus:Arcuate_Nucleus
xref: NIF_GrossAnatomy:birnlex_1638
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus
[Term]
id: UBERON:0001933
name: retrochiasmatic area
alt_id: UBERON:FMA_62330-MA_0000841
comment: This class was created automatically from a combination of ontologies
synonym: "retrochiasmatic region" EXACT []
xref: FMA:62330
xref: MA:0000841
xref: NIF_GrossAnatomy:birnlex_1569
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002272 ! medial zone of hypothalamus
[Term]
id: UBERON:0001934
name: dorsomedial nucleus of hypothalamus
alt_id: UBERON:FMA_62331-MA_0000838
def: "The Dorsomedial hypothalamic nucleus is a nucleus of the hypothalamus. It is involved in feeding, drinking, and body weight regulation. [WP,unvetted]." [Wikipedia:Dorsomedial_hypothalamic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dorsal medial nucleus of thalamus of hypothalamus" EXACT [OBOL:automatic]
synonym: "dorsal medial nucleus of thalamus of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "dorsal medial nucleus of thalamus of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "dorsomedial hypothalamic nucleus" EXACT []
synonym: "dorsomedial nuclear group of hypothalamus" EXACT [OBOL:automatic]
synonym: "dorsomedial nuclear group of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "dorsomedial nuclear group of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "dorsomedial nucleus of dorsal hypothalamus" EXACT []
synonym: "dorsomedial nucleus of intermediate hypothalamus" EXACT []
synonym: "dorsomedial nucleus of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "dorsomedial nucleus of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "dorsomedial nucleus of thalamus of hypothalamus" EXACT [OBOL:automatic]
synonym: "dorsomedial nucleus of thalamus of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "dorsomedial nucleus of thalamus of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "hypothalamus dorsal medial nucleus of thalamus" EXACT [OBOL:automatic]
synonym: "hypothalamus dorsomedial nuclear group" EXACT [OBOL:automatic]
synonym: "hypothalamus dorsomedial nucleus" EXACT [OBOL:automatic]
synonym: "hypothalamus dorsomedial nucleus of thalamus" EXACT [OBOL:automatic]
synonym: "hypothalamus medial dorsal nucleus" EXACT [OBOL:automatic]
synonym: "hypothalamus medial dorsal nucleus of thalamus" EXACT [OBOL:automatic]
synonym: "hypothalamus medial nuclear group" EXACT [OBOL:automatic]
synonym: "hypothalamus medial thalamic nuclei" EXACT [OBOL:automatic]
synonym: "hypothalamus medial thalamic nucleus" EXACT [OBOL:automatic]
synonym: "hypothalamus mediodorsal nucleus" EXACT [OBOL:automatic]
synonym: "hypothalamus mediodorsal thalamic nucleus" EXACT [OBOL:automatic]
synonym: "medial dorsal nucleus of hypothalamus" EXACT [OBOL:automatic]
synonym: "medial dorsal nucleus of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "medial dorsal nucleus of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "medial dorsal nucleus of thalamus of hypothalamus" EXACT [OBOL:automatic]
synonym: "medial dorsal nucleus of thalamus of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "medial dorsal nucleus of thalamus of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "medial nuclear group of hypothalamus" EXACT [OBOL:automatic]
synonym: "medial nuclear group of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "medial nuclear group of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "medial thalamic nuclei of hypothalamus" EXACT [OBOL:automatic]
synonym: "medial thalamic nuclei of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "medial thalamic nuclei of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "medial thalamic nucleus of hypothalamus" EXACT [OBOL:automatic]
synonym: "medial thalamic nucleus of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "medial thalamic nucleus of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "mediodorsal nucleus of hypothalamus" EXACT [OBOL:automatic]
synonym: "mediodorsal nucleus of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "mediodorsal nucleus of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "mediodorsal thalamic nucleus of hypothalamus" EXACT [OBOL:automatic]
synonym: "mediodorsal thalamic nucleus of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "mediodorsal thalamic nucleus of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area dorsal medial nucleus of thalamus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area dorsomedial nuclear group" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area dorsomedial nucleus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area dorsomedial nucleus of thalamus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area medial dorsal nucleus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area medial dorsal nucleus of thalamus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area medial nuclear group" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area medial thalamic nuclei" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area medial thalamic nucleus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area mediodorsal nucleus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area mediodorsal thalamic nucleus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region dorsal medial nucleus of thalamus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region dorsomedial nuclear group" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region dorsomedial nucleus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region dorsomedial nucleus of thalamus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region medial dorsal nucleus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region medial dorsal nucleus of thalamus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region medial nuclear group" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region medial thalamic nuclei" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region medial thalamic nucleus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region mediodorsal nucleus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region mediodorsal thalamic nucleus" EXACT [OBOL:automatic]
xref: BTO:0002474
xref: FMA:62331
xref: GAID:648
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MA:0000838
xref: NIF_GrossAnatomy:birnlex_1558
is_a: UBERON:0002739 ! implied link automatically realized ! medial dorsal nucleus
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0001898
intersection_of: UBERON:0002739 ! medial dorsal nucleus
intersection_of: part_of UBERON:0001898 ! hypothalamus
relationship: part_of UBERON:0002272 ! medial zone of hypothalamus
[Term]
id: UBERON:0001935
name: ventromedial nucleus of hypothalamus
alt_id: UBERON:FMA_62332-MA_0000845
def: "The ventromedial nucleus (sometimes referred to as the ventromedial hypothalamus) is a nucleus of the hypothalamus. [WP,unvetted]." [Wikipedia:Ventromedial_hypothalamic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ventromedial hypothalamic nucleus" EXACT []
xref: BTO:0002472
xref: FMA:62332
xref: GAID:650
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MA:0000845
xref: NIF_GrossAnatomy:birnlex_1572
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001936
name: tuberomammillary nucleus
alt_id: UBERON:FMA_62335-MA_0000853
def: "The tuberomammillary nucleus is a subnucleus of the posterior third of the hypothalamus. It consists of, largely, histaminergic and is involved with the control of arousal, sleep and circadian rhythm. Axons of the tuberomammillary nucleus project primarily to the cerebral cortex, thalamus, basal ganglia, basal forebrain, and hypothalamus. The projections to the cerebral cortex directly increase cortical activation and arousal, and projections to acetylcholinergic neurons of the basal forebrain and dorsal pons do so indirectly, by increasing the release of acetylcholine in the cerebral cortex. [WP,unvetted]." [Wikipedia:Tuberomammillary_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "caudal magnocellular nucleus" EXACT []
synonym: "mammilloinfundibular nucleus" EXACT []
synonym: "tuberomammillary hypothalamic nucleus" EXACT []
xref: FMA:62335
xref: MA:0000853
xref: NIF_GrossAnatomy:birnlex_1271
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0002206 ! mammillary body
[Term]
id: UBERON:0001937
name: lateral hypothalamic nucleus
alt_id: UBERON:FMA_62337-ZFA_0000227
def: "The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating. [WP,unvetted]." [Wikipedia:Lateral_hypothalamic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:62337
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: NIF_GrossAnatomy:birnlex_1199
xref: TAO:0000227
xref: ZFA:0000227
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001938
name: lateral mammillary nucleus
alt_id: UBERON:FMA_62341-MA_0000850
comment: This class was created automatically from a combination of ontologies
synonym: "lateral mammillary hypothalamic nucleus" EXACT []
synonym: "lateral nucleus of mammillary body" EXACT []
xref: FMA:62341
xref: MA:0000850
xref: NIF_GrossAnatomy:birnlex_1460
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0002206 ! mammillary body
[Term]
id: UBERON:0001939
name: medial mammillary nucleus
alt_id: UBERON:FMA_62342-MA_0000851
comment: This class was created automatically from a combination of ontologies
synonym: "internal mammillary nucleus" EXACT []
synonym: "medial nucleus of mammillary body" EXACT []
xref: FMA:62342
xref: MA:0000851
xref: NIF_GrossAnatomy:birnlex_1299
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0002206 ! mammillary body
[Term]
id: UBERON:0001940
name: supramammillary nucleus
alt_id: UBERON:FMA_62347-MA_0000852
comment: This class was created automatically from a combination of ontologies
xref: FMA:62347
xref: MA:0000852
xref: NIF_GrossAnatomy:birnlex_1479
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0002206 ! mammillary body
[Term]
id: UBERON:0001941
name: lateral habenular nucleus
alt_id: UBERON:FMA_62372-MA_0000831
comment: This class was created automatically from a combination of ontologies
synonym: "lateral habenula" EXACT []
xref: BTO:0002699
xref: FMA:62372
xref: MA:0000831
xref: NIF_GrossAnatomy:birnlex_1438
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus
relationship: part_of UBERON:0001904 ! habenula
[Term]
id: UBERON:0001942
name: medial habenular nucleus
alt_id: UBERON:FMA_62373-MA_0000832
comment: This class was created automatically from a combination of ontologies
synonym: "medial habenula" EXACT []
xref: BTO:0003686
xref: FMA:62373
xref: MA:0000832
xref: NIF_GrossAnatomy:birnlex_1431
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus
relationship: part_of UBERON:0001904 ! habenula
[Term]
id: UBERON:0001943
name: midbrain tegmentum
alt_id: UBERON:FMA_62393-MA_0000212-ZFA_0001354
def: "Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle." [Wikipedia:Midbrain_tegmentum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "mesencephalic tegmentum" EXACT []
synonym: "tegmentum" EXACT []
synonym: "tegmentum of midbrain" EXACT []
xref: BTO:0003388
xref: EFO:0000921
xref: FMA:62393
xref: HOG:0001367
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Gray712.png/200px-Gray712.png
xref: MA:0000212
xref: MAT:0000452
xref: NIF_GrossAnatomy:birnlex_1031
xref: NIF_GrossAnatomy:birnlex_1200
xref: TAO:0001354
xref: ZFA:0000160
xref: ZFA:0001354
is_a: UBERON:0002950 ! regional part of midbrain
relationship: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0001944
name: pretectal region
alt_id: UBERON:FMA_62402-MA_0001062-ZFA_0000418
def: "The pretectum, also known as the pretectal area, is a region of neurons found between the thalamus and midbrain. It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex. [WP,unvetted]." [Wikipedia:Pretectum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pretectal area" EXACT []
synonym: "pretectal nuclei" EXACT []
synonym: "pretectum" EXACT []
xref: FMA:62402
xref: MA:0001062
xref: NIF_GrossAnatomy:birnlex_703
xref: TAO:0000418
xref: ZFA:0000418
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001945
name: superior colliculus
alt_id: UBERON:FMA_62403-MA_0001068-ZFA_0000445
def: "The roof of the midbrain, morphologically visible by the end of the segmentation period. Kimmel et al, 1995." [Wikipedia:Superior_colliculus, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior colliculus" EXACT []
synonym: "anterior corpus quadrigeminum" EXACT []
synonym: "cranial colliculus" EXACT []
synonym: "dorsal midbrain" RELATED []
synonym: "optic tectum" EXACT []
synonym: "tectal lobe" RELATED []
synonym: "tectum" RELATED []
synonym: "tectum opticum" RELATED []
xref: EFO:0002474
xref: FMA:62403
xref: GAID:576
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png
xref: MA:0001068
xref: NIF_GrossAnatomy:birnlex_1040
xref: TAO:0000445
xref: ZFA:0000445
is_a: UBERON:0002554 ! implied link automatically realized ! regional part of superior colliculus
is_a: UBERON:0002966 ! regional part of midbrain tectum
relationship: part_of UBERON:0002259 ! tectal plate
[Term]
id: UBERON:0001946
name: inferior colliculus
alt_id: UBERON:FMA_62404-MA_0001067
def: "The inferior colliculi together with the superior colliculi form the eminences of the corpora quadrigemina, and also part of the tectal region of the midbrain. The inferior colliculus lies caudal to its counterpart - the superior colliculus - above the trochlear nerve, and at the base of the projection of the medial geniculate nucleus (MGN) and the lateral geniculate nucleus (LGN). The inferior colliculus is the principal midbrain nucleus of the auditory pathway and receives input from several more peripheral brainstem nuclei in the auditory pathway, as well as inputs from the auditory cortex. The inferior colliculus has three subnuclei. [WP,unvetted]." [Wikipedia:Inferior_colliculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "caudal colliculus" EXACT []
synonym: "posterior colliculus" EXACT []
synonym: "posterior corpus quadrigeminum" EXACT []
xref: EFO:0002465
xref: FMA:62404
xref: GAID:575
xref: MA:0001067
xref: NIF_GrossAnatomy:birnlex_806
is_a: UBERON:0002917 ! implied link automatically realized ! regional part of inferior colliculus
is_a: UBERON:0002966 ! regional part of midbrain tectum
relationship: part_of UBERON:0002259 ! tectal plate
[Term]
id: UBERON:0001947
name: red nucleus
alt_id: UBERON:FMA_62407-MA_0001063
def: "The red nucleus is a structure in the rostral midbrain involved in motor coordination. It comprises a caudal magnocellular and a rostral parvocellular part. [WP,unvetted]." [Wikipedia:Red_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:62407
xref: GAID:586
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png
xref: MA:0001063
xref: NIF_GrossAnatomy:birnlex_1478
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0001948
name: regional part of spinal cord
alt_id: UBERON:FMA_62420-ZFA_0001332
comment: TODO - check ZFA
subset: uberon_slim
synonym: "spinal neuromere" RELATED []
synonym: "spinal neuromeres" RELATED []
xref: NIF_GrossAnatomy:birnlex_1496
xref: ZFA:0001332
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0001949
name: gingival epithelium
alt_id: UBERON:FMA_62423-MA_0001576
def: "An epithelium that is part of a gingiva [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of gingiva" EXACT [OBOL:automatic]
synonym: "epithelium of gingiva" EXACT []
synonym: "gingiva epithelial tissue" EXACT [OBOL:automatic]
synonym: "gingiva epithelium" EXACT [OBOL:automatic]
xref: FMA:62423
xref: MA:0001576
xref: ncithesaurus:Gingival_Epithelium
is_a: UBERON:0000486 ! multilaminar epithelium
is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium
relationship: part_of UBERON:0001828
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001828 ! gingiva
relationship: part_of UBERON:0001828 ! gingiva
[Term]
id: UBERON:0001950
name: neocortex
alt_id: UBERON:FMA_62429-MA_0002754
def: "The neocortex is a part of the brain of mammals. It is the outer layer of the cerebral hemispheres, and made up of six layers, labelled I to VI (with VI being the innermost and I being the outermost). The neocortex is part of the cerebral cortex (along with the archicortex and paleocortex, which are cortical parts of the limbic system). It is involved in higher functions such as sensory perception, generation of motor commands, spatial reasoning, conscious thought and, in humans, language. Other names for the neocortex include neopallium and isocortex ('equal rind'). [WP,unvetted]." [Wikipedia:Neocortex]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cerebral cortex" RELATED []
synonym: "cerebral neocortex" EXACT []
synonym: "homogenetic cortex" EXACT []
synonym: "isocortex" EXACT []
synonym: "isocortex (sensu lato)" EXACT [FMA:62429]
synonym: "neopallial cortex" EXACT []
synonym: "neopallium" EXACT []
xref: BTO:0000920
xref: EHDAA2:0000234
xref: FMA:62429
xref: GAID:677
xref: MA:0002754
xref: NIF_GrossAnatomy:birnlex_2547
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0001951
name: epithelium of nasopharynx
alt_id: UBERON:0003237
alt_id: UBERON:FMA_62452-MA_0001865
def: "An epithelium that is part of a nasopharynx [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "epithelial tissue of nasopharynx" EXACT [OBOL:automatic]
synonym: "epithelial tissue of rhinopharynx" EXACT [OBOL:automatic]
synonym: "epithelium of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "epithelium of rhinopharynx" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx epithelium" EXACT [OBOL:automatic]
synonym: "nasopharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "nasopharynx epithelium" EXACT []
synonym: "rhinopharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "rhinopharynx epithelium" EXACT [OBOL:automatic]
xref: EHDAA:7090
xref: EHDAA2:0001241
xref: FMA:62452
xref: HOG:0001038
xref: MA:0001865
xref: ncithesaurus:Nasopharynx_Epithelium
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0003351 ! implied link automatically realized ! epithelium of pharynx
is_a: UBERON:0004814 ! implied link automatically realized ! upper respiratory tract epithelium
relationship: part_of UBERON:0001728
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001728 ! nasopharynx
[Term]
id: UBERON:0001952
name: epithelium of oropharynx
alt_id: UBERON:FMA_62453-MA_0001605
def: "An epithelium that is part of a oropharynx [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "epithelial tissue of oropharynx" EXACT [OBOL:automatic]
synonym: "epithelium of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "oral part of pharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "oral part of pharynx epithelium" EXACT [OBOL:automatic]
synonym: "oropharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "oropharynx epithelium" EXACT []
xref: FMA:62453
xref: MA:0001605
xref: ncithesaurus:Oropharynx_Epithelium
is_a: UBERON:0000486 ! multilaminar epithelium
is_a: UBERON:0003351 ! implied link automatically realized ! epithelium of pharynx
is_a: UBERON:0004808 ! implied link automatically realized ! gastrointestinal system epithelium
relationship: part_of UBERON:0001729
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001729 ! oropharynx
relationship: part_of UBERON:0001729 ! oropharynx
[Term]
id: UBERON:0001953
name: presubiculum
alt_id: UBERON:FMA_62486-MA_0000923
def: "Area 27 of Brodmann-1909 is a cytoarchitecturally defined cortical area that is a rostral part of the parahippocampal gyrus of the guenon (Brodmann-1909). It is commonly regarded as a synonym of presubiculum (Crosby-62). [WP,unvetted]." [Wikipedia:Brodmann_area_27]
comment: This class was created automatically from a combination of ontologies
synonym: "area 27 of Brodmann" EXACT []
synonym: "Brodmann area 27" EXACT []
xref: FMA:62486
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Brodmann_Cytoarchitectonics_27.png/200px-Brodmann_Cytoarchitectonics_27.png
xref: MA:0000923
xref: NIF_GrossAnatomy:birnlex_1108
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0001954
name: hippocampus
alt_id: UBERON:FMA_62493-MA_0000191-MIAA_0000114
def: "The hippocampus is a major component of the brains of humans and other mammals. It belongs to the limbic system and plays major roles in long term memory and spatial navigation. Like the cerebral cortex, it is a paired structure, with mirror-image halves in the left and right sides of the brain. The hippocampus is closely associated with the cerebral cortex, and in primates is located in the medial temporal lobe, underneath the cortical surface. It is shaped like a curved tube, which in humans is convoluted in a way that reminded early anatomists of a seahorse." [Wikipedia:Hippocampus]
comment: TODO - ammon gyrus
subset: uberon_slim
synonym: "Ammon's horn" EXACT []
synonym: "hippocampus major" EXACT []
synonym: "hippocampus proper" EXACT []
xref: BTO:0000601
xref: EFO:0000530
xref: FMA:62493
xref: GAID:623
xref: HOG:0001177
xref: MA:0000191
xref: MAT:0000114
xref: MIAA:0000114
xref: ncithesaurus:Hippocampus
xref: NIF_GrossAnatomy:birnlex_721
xref: NIF_GrossAnatomy:birnlex_726
xref: OpenCyc:Mx4rv3piFJwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000349 ! limbic system
relationship: part_of UBERON:0001890 ! forebrain
relationship: part_of UBERON:0002421 ! hippocampal formation
[Term]
id: UBERON:0001955
name: epithelium of respiratory bronchiole
alt_id: UBERON:FMA_62498-MA_0001773
def: "An epithelium that is part of a respiratory bronchiole [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchiolus respiratorius epithelial tissue" EXACT [OBOL:automatic]
synonym: "bronchiolus respiratorius epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of bronchiolus respiratorius" EXACT [OBOL:automatic]
synonym: "epithelial tissue of respiratory bronchiole" EXACT [OBOL:automatic]
synonym: "epithelium of bronchiolus respiratorius" EXACT [OBOL:automatic]
synonym: "respiratory bronchiole epithelial tissue" EXACT [OBOL:automatic]
synonym: "respiratory bronchiole epithelium" EXACT []
xref: FMA:62498
xref: MA:0001773
xref: ncithesaurus:Respiratory_Bronchiole_Epithelium
is_a: UBERON:0002051 ! epithelium of bronchiole
relationship: part_of UBERON:0002188
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002188 ! respiratory bronchiole
relationship: part_of UBERON:0002188 ! respiratory bronchiole
[Term]
id: UBERON:0001956
name: cartilage of bronchus
alt_id: UBERON:FMA_62649-MA_0001835
def: "A cartilage that is part of a bronchus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchi cartilage" EXACT [OBOL:automatic]
synonym: "bronchial cartilage" EXACT []
synonym: "bronchial trunk cartilage" EXACT [OBOL:automatic]
synonym: "bronchus cartilage" EXACT []
synonym: "cartilage of bronchi" EXACT [OBOL:automatic]
synonym: "cartilage of bronchial trunk" EXACT [OBOL:automatic]
xref: FMA:62649
xref: MA:0001835
xref: ncithesaurus:Bronchus_Cartilage
is_a: UBERON:0002418 ! cartilage
is_a: UBERON:0003592 ! implied link automatically realized ! bronchus connective tissue
is_a: UBERON:0003603 ! implied link automatically realized ! lower respiratory tract cartilage
relationship: part_of UBERON:0002185
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0001957
name: submucosa of bronchus
alt_id: UBERON:FMA_62653-MA_0001837
def: "A submucosa that is part of a bronchus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchi submucosa" EXACT [OBOL:automatic]
synonym: "bronchial submucosa" EXACT []
synonym: "bronchial trunk submucosa" EXACT [OBOL:automatic]
synonym: "bronchus submucosa" EXACT []
synonym: "submucosa of bronchi" EXACT [OBOL:automatic]
synonym: "submucosa of bronchial trunk" EXACT [OBOL:automatic]
xref: FMA:62653
xref: MA:0001837
xref: ncithesaurus:Bronchus_Submucosa
is_a: UBERON:0000009 ! submucosa
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0004777 ! implied link automatically realized ! respiratory system submucosa
relationship: part_of UBERON:0002185
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0001958
name: epithelium of terminal bronchiole
alt_id: UBERON:FMA_62794-MA_0001774
def: "An epithelium that is part of a terminal bronchiole [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchiolus terminalis epithelial tissue" EXACT [OBOL:automatic]
synonym: "bronchiolus terminalis epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of bronchiolus terminalis" EXACT [OBOL:automatic]
synonym: "epithelial tissue of terminal bronchiole" EXACT [OBOL:automatic]
synonym: "epithelium of bronchiolus terminalis" EXACT [OBOL:automatic]
synonym: "terminal bronchiole epithelial tissue" EXACT [OBOL:automatic]
synonym: "terminal bronchiole epithelium" EXACT []
xref: FMA:62794
xref: MA:0001774
xref: ncithesaurus:Terminal_Bronchiole_Epithelium
is_a: UBERON:0002051 ! epithelium of bronchiole
relationship: part_of UBERON:0002187
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002187 ! terminal bronchiole
relationship: part_of UBERON:0002187 ! terminal bronchiole
[Term]
id: UBERON:0001959
name: white pulp of spleen
alt_id: UBERON:FMA_62805-MA_0000762
def: "The white pulp contains T cells, B cells and accessory cells. The function of the white pulp is to mount an immunological response to antigens within the blood. The white pulp is present in the form of a periarteriolar lymphoid sheath. This sheath contains B cell follicles and T cells. At the edge of the T zone is a region known as the marginal zone where larger lymphocytes and antigen presenting dendritic cells are located." [Wikipedia:White_pulp]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "spleen white pulp" EXACT []
synonym: "white pulp" EXACT []
xref: FMA:62805
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/15/Gray1191.png/200px-Gray1191.png
xref: MA:0000762
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0001960
name: periarterial lymphatic sheath
alt_id: UBERON:FMA_62810-MA_0000765
comment: This class was created automatically from a combination of ontologies
synonym: "PALS" EXACT []
synonym: "periarterial lymphoid sheath" EXACT []
synonym: "spleen periarteriolar lymphatic sheath" EXACT []
xref: FMA:62810
xref: MA:0000765
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001959 ! white pulp of spleen
[Term]
id: UBERON:0001961
name: mucosa-associated lymphoid tissue
alt_id: UBERON:FMA_62819-MA_0000140
def: "diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [Wikipedia:Mucosa-associated_lymphoid_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "epithelio-lymphoid tissue" EXACT []
synonym: "MALT" EXACT []
synonym: "mucosa associated lymphatic tissue" EXACT []
synonym: "mucosa associated lymphoid tissue" EXACT []
synonym: "mucosa-associated lymphoid tissue" EXACT [GO:0048537]
synonym: "mucosal-associated lymphatic tissue" EXACT [GO:0048537]
synonym: "mucosal-associated lymphoid tissue" EXACT [GO:0048537]
xref: FMA:62819
xref: MA:0000140
xref: ncithesaurus:Mucosa-Associated_Lymphoid_Tissue
is_a: UBERON:0001744 ! lymphoid tissue
relationship: part_of UBERON:0000344 ! mucosa
[Term]
id: UBERON:0001962
name: gut-associated lymphoid tissue
alt_id: UBERON:FMA_62820-MA_0000136
def: "Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [Wikipedia:Gut-associated_lymphoid_tissue]
subset: uberon_slim
synonym: "GALT" RELATED []
synonym: "gut associated lymphoid tissue" EXACT []
xref: FMA:62820
xref: MA:0000136
xref: ncithesaurus:Gut_Associated_Lymphoid_Tissue
is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0001963
name: bronchial-associated lymphoid tissue
alt_id: UBERON:FMA_62821-MA_0000135
comment: This class was created automatically from a combination of ontologies
synonym: "BALT" RELATED []
synonym: "bronchus associated lymphoid tissue" EXACT []
xref: FMA:62821
xref: MA:0000135
xref: ncithesaurus:Bronchus-Associated_Lymphoid_Tissue
is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue
[Term]
id: UBERON:0001964
name: least splanchnic nerve
alt_id: UBERON:FMA_6283-MA_0002635
def: "Thoracic splanchnic nerves are splanchnic nerves that arise from the sympathetic trunk in the thorax and travel inferiorly to provide sympathetic innervation to the abdomen. The nerves contain preganglionic sympathetic and visceral afferent fibers. There are three main thoracic splanchnic nerves: The nerve's origins can be remembered by the '4-3-2 rule', accounting for the number of ganglia giving rise to each nerve. However, different sources define the nerves in different ways, so this rule may not always be reliable. [WP,unvetted]." [Wikipedia:Least_splanchnic_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "least thoracic splanchnic nerve" EXACT []
synonym: "lowest splanchnic nerve" EXACT []
synonym: "renal branch of lesser splanchnic nerve" EXACT []
synonym: "renal nerve" EXACT []
xref: FMA:6283
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png
xref: MA:0002635
is_a: UBERON:0000062 ! organ
is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001965
name: substantia nigra pars compacta
alt_id: UBERON:FMA_62907-MA_0001064
def: "Regional part of substantia nigra consisting of a densely packed region of cells, more or less dorsal to the pars reticulata, but extending into the pars reticulata in some species. The dominant neurotransmitter used by pars compacta neurons is dopamine. Pars compacta neurons are pigmented in many species (MM)[NIF]." [NIF_GrossAnatomy:birnlex_990, Wikipedia:Substantia_nigra_pars_compacta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "compact part of substantia nigra" EXACT []
synonym: "pars compacta" EXACT []
synonym: "SNpc" EXACT []
synonym: "substantia nigra, compact part" EXACT []
xref: BTO:0003749
xref: FMA:62907
xref: MA:0001064
xref: NIF_GrossAnatomy:birnlex_990
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002038 ! substantia nigra
[Term]
id: UBERON:0001966
name: substantia nigra pars reticulata
alt_id: UBERON:FMA_62908-MA_0001066
def: "Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM)[NLex]." [Neurolex:Substantia_nigra_pars_reticulata, Wikipedia:Pars_reticulata]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pars reticulata" EXACT []
synonym: "reticular part of substantia nigra" EXACT []
synonym: "substantia nigra, reticular part" EXACT []
xref: BTO:0003750
xref: FMA:62908
xref: MA:0001066
xref: NIF_GrossAnatomy:birnlex_968
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002038 ! substantia nigra
[Term]
id: UBERON:0001967
name: reticular lamina
alt_id: UBERON:FMA_62924-MA_0001194
def: "." [Wikipedia:Reticular_lamina]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fibroreticular lamina" EXACT []
synonym: "lamina fibroreticularis" EXACT []
synonym: "reticular membrane" RELATED []
xref: FMA:62924
xref: MA:0001194
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000476 ! acellular anatomical structure
relationship: part_of UBERON:0002227 ! spiral organ of cochlea
[Term]
id: UBERON:0001968
name: semen
alt_id: UBERON:FMA_62966-MA_0002522
alt_id: UBERON:FMA_62967-MA_0002523-MIAA_0000057
alt_id: UBERON:FMA_62969-MA_0002526
def: "Body substance which consists of spermatozoa and seminal plasma. // Secretion produced prostatic glands, bulbourethral glands or the seminal vesicles." [Wikipedia:Semen]
comment: TODO: check semen vs seminal fluid
subset: uberon_slim
synonym: "secretion of seminal vesicle" EXACT []
synonym: "semen" BROAD []
synonym: "seminal fluid" EXACT []
synonym: "seminal vesicle secretion" EXACT []
xref: BTO:0001230
xref: FMA:62966
xref: FMA:62967
xref: FMA:62969
xref: GAID:1169
xref: MA:0002522
xref: MA:0002523
xref: MA:0002526
xref: MAT:0000057
xref: MIAA:0000057
xref: ncithesaurus:Semen
xref: OpenCyc:Mx4rvgC-zpwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001969
name: blood plasma
alt_id: UBERON:FMA_62970-MA_0002501-MIAA_0000052
def: "Body substance in liquid state contained in the lumen of arterial and venous trees, blood capillary and the cardiac chambers; constitutes the liquid phase of blood." [Wikipedia:Blood_plasma]
subset: uberon_slim
synonym: "plasma" EXACT []
synonym: "portion of blood plasma" EXACT []
synonym: "portion of plasma" EXACT []
xref: BTO:0000131
xref: EFO:0001905
xref: FMA:62970
xref: GAID:1178
xref: MA:0002501
xref: MAT:0000052
xref: MIAA:0000052
xref: ncithesaurus:Plasma
xref: OpenCyc:Mx4rEg4ZYrIbEduAAAAOpmP6tw
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0000178 ! blood
[Term]
id: UBERON:0001970
name: bile
alt_id: UBERON:FMA_62971-MA_0002513
def: "." [Wikipedia:Bile]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000121
xref: ENVO:02000023
xref: FMA:62971
xref: GAID:1157
xref: galen:Bile
xref: MA:0002513
xref: ncithesaurus:Bile
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001971
name: gastric juice
alt_id: UBERON:FMA_62972-MA_0002519
def: "." [Wikipedia:Gastric_juice]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "stomach secretion" EXACT []
xref: BTO:0000501
xref: FMA:62972
xref: GAID:1160
xref: galen:GastricJuice
xref: MA:0002519
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001972
name: submucosa of esophagus
alt_id: UBERON:FMA_62997-MA_0002724
def: "A submucosa that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophageal submucosa" EXACT []
synonym: "esophagus submucosa" EXACT []
synonym: "gullet submucosa" EXACT [OBOL:automatic]
synonym: "oesophagus submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of esophagus" EXACT []
synonym: "submucosa of gullet" EXACT [OBOL:automatic]
synonym: "submucosa of oesophagus" EXACT [OBOL:automatic]
xref: FMA:62997
xref: MA:0002724
is_a: UBERON:0000009 ! submucosa
relationship: part_of UBERON:0001043
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001096 ! wall of esophagus
[Term]
id: UBERON:0001973
name: substance of tooth
alt_id: UBERON:FMA_63001-MA_0002540
def: "Body substance in solid state produced by odontoblasts, amyloblasts or cementoblasts." []
comment: note the asserted dual parentage. This is deliberate, pending better definitions of the distinction between substance and tissue
subset: uberon_slim
synonym: "tooth substance" EXACT []
xref: FMA:63001
xref: MA:0002540
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0001974
name: lamina propria of esophagus
alt_id: UBERON:FMA_63050-MA_0001568
def: "A lamina propria that is part of a esophagus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "esophagus lamina propria" EXACT []
synonym: "esophagus lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "esophagus lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "gullet lamina propria" EXACT [OBOL:automatic]
synonym: "gullet lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "gullet lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of esophagus" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of gullet" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of oesophagus" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of esophagus" EXACT []
synonym: "lamina propria mucosae of gullet" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of oesophagus" EXACT [OBOL:automatic]
synonym: "lamina propria of gullet" EXACT [OBOL:automatic]
synonym: "lamina propria of oesophagus" EXACT [OBOL:automatic]
synonym: "oesophagus lamina propria" RELATED []
synonym: "oesophagus lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "oesophagus lamina propria mucosae" EXACT [OBOL:automatic]
xref: FMA:63050
xref: MA:0001568
is_a: UBERON:0000030 ! lamina propria
is_a: UBERON:0004780 ! implied link automatically realized ! gastrointestinal system lamina propria
relationship: part_of UBERON:0001043
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0002469 ! esophagus mucosa
[Term]
id: UBERON:0001975
name: serosa of esophagus
alt_id: UBERON:FMA_63057-MA_0001571
def: "A serous membrane that is part of a esophagus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "esophagus serosa" EXACT []
synonym: "esophagus serous membrane" EXACT [OBOL:automatic]
synonym: "gullet serosa" EXACT [OBOL:automatic]
synonym: "gullet serous membrane" EXACT [OBOL:automatic]
synonym: "oesophagus serosa" RELATED []
synonym: "oesophagus serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of abdominal part of esophagus" EXACT []
synonym: "serosa of gullet" EXACT [OBOL:automatic]
synonym: "serosa of oesophagus" EXACT []
synonym: "serous coat of oesophagus" EXACT []
synonym: "serous membrane of esophagus" EXACT [OBOL:automatic]
synonym: "serous membrane of gullet" EXACT [OBOL:automatic]
synonym: "serous membrane of oesophagus" EXACT [OBOL:automatic]
xref: FMA:63057
xref: MA:0001571
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0004782 ! implied link automatically realized ! gastrointestinal system serosa
relationship: part_of UBERON:0001043
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001096 ! wall of esophagus
[Term]
id: UBERON:0001976
name: epithelium of esophagus
alt_id: UBERON:FMA_63063-MA_0001565-ZFA_0001499
def: "Simple columnar epithelium that lines the esophagus. Chen et al, 2007." [ZFIN:curator]
comment: TODO - Different kinds of epithelium in ZFA and FMA - DV with CARO
subset: uberon_slim
synonym: "epithelial tissue of esophagus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of gullet" EXACT [OBOL:automatic]
synonym: "epithelial tissue of oesophagus" EXACT [OBOL:automatic]
synonym: "epithelium of gullet" EXACT [OBOL:automatic]
synonym: "epithelium of oesophagus" EXACT [OBOL:automatic]
synonym: "esophageal epithelium" EXACT []
synonym: "esophagus epithelial tissue" EXACT [OBOL:automatic]
synonym: "esophagus epithelium" EXACT []
synonym: "gullet epithelial tissue" EXACT [OBOL:automatic]
synonym: "gullet epithelium" EXACT [OBOL:automatic]
synonym: "oesophagus epithelial tissue" EXACT [OBOL:automatic]
synonym: "oesophagus epithelium" RELATED []
xref: BTO:0001578
xref: EHDAA2:0001287
xref: FMA:63063
xref: MA:0001565
xref: ncithesaurus:Esophageal_Epithelium
xref: TAO:0001499
xref: ZFA:0001499
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0000486 ! multilaminar epithelium
is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa
is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium
relationship: part_of UBERON:0001043
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0002469 ! esophagus mucosa
[Term]
id: UBERON:0001977
name: serum
alt_id: UBERON:FMA_63083-MA_0002502
def: "Body substance derived from plasma by the elimination of fibrinogen." [Wikipedia:Serum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "blood serum" EXACT []
xref: BTO:0000133
xref: BTO:0001239
xref: FMA:63083
xref: MA:0002502
xref: ncithesaurus:Serum
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001969 ! blood plasma
[Term]
id: UBERON:0001978
name: parenchyma of pancreas
alt_id: UBERON:FMA_63120-MA_0000724
comment: This class was created automatically from a combination of ontologies
synonym: "pancreas parenchyma" EXACT []
synonym: "pancreatic parenchyma" EXACT []
xref: FMA:63120
xref: HOG:0001430
xref: MA:0000724
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0001979
name: venule
alt_id: UBERON:FMA_63130-MA_0000071
def: "Subdivision of venous tree (organ) which is directly continuous with the capillary vessel." [Wikipedia:Venule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0002626
xref: FMA:63130
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Illu_capillary.jpg/200px-Illu_capillary.jpg
xref: MA:0000071
xref: ncithesaurus:Venule
xref: ZFA:0005315
is_a: UBERON:0003920 ! venous blood vessel
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0001980
name: arteriole
alt_id: UBERON:FMA_63182-MA_0000063
def: "the smallest division of the artery located between the muscular arteries and the capillaries[GO]. Subdivision of arterial tree (organ) which is directly continuous with capillary vessel[FMA]." [FMA:63182, GO:0014830, Wikipedia:Arteriole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001997
xref: FMA:63182
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Illu_capillary.jpg/200px-Illu_capillary.jpg
xref: MA:0000063
xref: ncithesaurus:Arteriole
xref: ZFA:0005255
is_a: UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0001637 ! artery
[Term]
id: UBERON:0001981
name: blood vessel
alt_id: UBERON:FMA_63183-XAO_0001011
def: "A vessel through which blood circulates in the body." [BTO:0001102, Wikipedia:Blood_vessel]
comment: note that FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX
subset: uberon_slim
xref: BTO:0001102
xref: EFO:0000817
xref: EHDAA:240
xref: FMA:50722
xref: FMA:63183
xref: GAID:169
xref: HOG:0001250
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png
xref: MA:0000060
xref: MAT:0000393
xref: ncithesaurus:Blood_Vessel
xref: NIF_GrossAnatomy:nlx_anat_090901
xref: OpenCyc:Mx4rvVjxlpwpEbGdrcN5Y29ycA
xref: XAO:0001011
xref: ZFA:0005314
is_a: UBERON:0000055 ! vessel
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
disjoint_from: UBERON:0001473 ! lymphatic vessel
relationship: develops_from UBERON:0004872 ! splanchnic layer of lateral plate mesoderm
relationship: has_part UBERON:0000178 ! blood
relationship: part_of UBERON:0004537 ! blood vasculature
[Term]
id: UBERON:0001982
name: capillary
alt_id: UBERON:FMA_63194-MA_0000065-XAO_0000116
def: "Microvessel of the blood circulation system lined with vascular endothelial cells[ZFA]. Subdivision of vascular tree (organ) which connects an arteriole to a venule or vice-versa. // Any of the smallest blood vessels connecting arterioles with venules." [NLM:capillary, Wikipedia:Capillary]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "blood capillary" EXACT []
synonym: "capillary vessel" EXACT []
xref: BTO:0002045
xref: EFO:0001906
xref: FMA:63194
xref: HOG:0001253
xref: MA:0000065
xref: ncithesaurus:Capillary
xref: NIF_GrossAnatomy:nlx_anat_090902
xref: OpenCyc:Mx4rvWEU-5wpEbGdrcN5Y29ycA
xref: XAO:0000116
xref: ZFA:0005250
is_a: UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0001983
name: crypt of lieberkuhn
alt_id: UBERON:FMA_63621-MA_0001535
def: "A gland found in the epithelial lining of the small intestine and colon." [Wikipedia:Crypts_of_Lieberkuhn]
comment: This class was created automatically from a combination of ontologies
synonym: "intestinal gland" BROAD [Wikipedia:Crypts_of_Lieberkuhn]
synonym: "lieberkuhn crypt" EXACT []
xref: FMA:63621
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/38/Small_intestine_low_mag.jpg/200px-Small_intestine_low_mag.jpg
xref: MA:0001535
xref: ncithesaurus:Crypts_of_the_Lieberkuhn
is_a: UBERON:0000333 ! implied link automatically realized ! intestinal gland
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0001242 ! intestinal mucosa
[Term]
id: UBERON:0001984
name: crypt of lieberkuhn of large intestine
alt_id: UBERON:FMA_63622-MA_0001544
def: "A crypt of lieberkuhn that is part of a large intestine [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "intestinal gland of large intestine" EXACT [OBOL:automatic]
synonym: "large intestinal crypt of lieberkuhn" EXACT []
synonym: "large intestine crypt of lieberkuhn" EXACT []
synonym: "large intestine intestinal gland" EXACT [OBOL:automatic]
synonym: "large intestine lieberkuhn crypt" EXACT [OBOL:automatic]
synonym: "lieberkuhn crypt of large intestine" EXACT [OBOL:automatic]
xref: FMA:63622
xref: MA:0001544
xref: ncithesaurus:Large_Intestinal_Crypt_of_the_Lieberkuhn
is_a: UBERON:0001983 ! crypt of lieberkuhn
relationship: part_of UBERON:0000059
intersection_of: UBERON:0001983 ! crypt of lieberkuhn
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001207 ! mucosa of large intestine
[Term]
id: UBERON:0001985
name: corneal endothelium
alt_id: UBERON:FMA_63882-MA_0001242
def: "A monolayer of specialized, flattened, mitochondria-rich cells that lines the posterior surface of the cornea and faces the anterior chamber of the eye[WP]." [Wikipedia:Corneal_endothelium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cornea endothelium" EXACT [OBOL:automatic]
synonym: "endothelium of cornea" EXACT [OBOL:automatic]
xref: FMA:63882
xref: GAID:891
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray871.png/200px-Gray871.png
xref: MA:0001242
xref: ncithesaurus:Corneal_Endothelium
xref: ZFA:0001687
is_a: UBERON:0001772 ! implied link automatically realized ! corneal epithelium
is_a: UBERON:0001986 ! endothelium
relationship: part_of UBERON:0000964
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0000964 ! cornea
[Term]
id: UBERON:0001986
name: endothelium
alt_id: UBERON:FMA_63916-ZFA_0001639
def: "An endothelium is an epithelium that lines an anatomical structure[GO]. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium[GO]. Simple squamous epithelium which lines blood and lymphatic vessels and the heart[ZFA]." [GO:0001935, GO:0003158, Wikipedia:Endothelium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000393
xref: EHDAA:1011
xref: EHDAA:1543
xref: EHDAA:1560
xref: EHDAA:1566
xref: EHDAA:1578
xref: EHDAA:2211
xref: EHDAA:2217
xref: EHDAA:2227
xref: EHDAA:3076
xref: EHDAA:3082
xref: EHDAA:3790
xref: EHDAA:4953
xref: EHDAA:4961
xref: EHDAA:4975
xref: EHDAA:4983
xref: EHDAA:4991
xref: FMA:63916
xref: GAID:520
xref: galen:Endothelium
xref: ncithesaurus:Endothelium
xref: ZFA:0001639
is_a: UBERON:0000487 ! simple squamous epithelium
[Term]
id: UBERON:0001987
name: placenta
alt_id: UBERON:FMA_63934-MA_0000386-MIAA_0000279
def: "organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin[GO]." [Wikipedia:Placenta]
comment: TODO - check taxon restriction - WP says: also found in some snakes and lizards with varying levels of development up to mammalian levels. Pough et al. 1992. Herpetology: Third Edition. Pearson Prentice Hall:Pearson Education, Inc., 2002.
subset: uberon_slim
xref: BTO:0001078
xref: EFO:0001407
xref: FMA:63934
xref: GAID:379
xref: HOG:0001266
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Placenta.jpg/200px-Placenta.jpg
xref: MA:0000386
xref: MAT:0000279
xref: MIAA:0000279
xref: ncithesaurus:Placenta
xref: OpenCyc:Mx4rvv4zZ5wpEbGdrcN5Y29ycA
is_a: UBERON:0000062 ! organ
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0000990 ! reproductive system
[Term]
id: UBERON:0001988
name: feces
alt_id: UBERON:FMA_64183-MA_0002509-MIAA_0000053
def: "Excretion in semisolid state processed by the intestine." [Wikipedia:Feces]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "faeces" EXACT []
synonym: "fecal matter" EXACT []
synonym: "stool" EXACT []
xref: BTO:0000440
xref: ENVO:00002003
xref: FMA:64183
xref: GAID:1199
xref: galen:Feces
xref: MA:0002509
xref: MAT:0000053
xref: MIAA:0000053
xref: ncithesaurus:Feces
xref: OpenCyc:Mx4rvVjJMZwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001989
name: superior cervical ganglion
alt_id: UBERON:FMA_6467-MA_0001156-ZFA_0001572
def: "Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain." [Wikipedia:Superior_cervical_ganglion, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "superior cervical sympathetic ganglion" EXACT []
synonym: "superior sympathetic cervical ganglion" RELATED []
xref: BTO:0001325
xref: EFO:0001945
xref: EHDAA:8943
xref: EHDAA2:0001946
xref: FMA:6467
xref: GAID:712
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png
xref: MA:0001156
xref: TAO:0001572
xref: ZFA:0001572
is_a: UBERON:0001991 ! cervical ganglion
[Term]
id: UBERON:0001990
name: middle cervical ganglion
alt_id: UBERON:FMA_6468-MA_0001155
def: "The middle cervical ganglion is the smallest of the three cervical ganglia, and is occasionally absent. It is placed opposite the sixth cervical vertebra, usually in front of, or close to, the inferior thyroid artery. It is probably formed by the coalescence of two ganglia corresponding to the fifth and sixth cervical nerves. It sends gray rami communicantes to the fifth and sixth cervical nerves, and gives off the middle cardiac nerve. [WP,unvetted]." [Wikipedia:Middle_cervical_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "middle cervical sympathetic ganglion" EXACT []
xref: BTO:0000359
xref: EHDAA:8941
xref: EHDAA2:0001180
xref: FMA:6468
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png
xref: MA:0001155
is_a: UBERON:0001991 ! cervical ganglion
[Term]
id: UBERON:0001991
name: cervical ganglion
alt_id: UBERON:FMA_6470-MA_0001153
def: "The cervical ganglia are paravertebral ganglia of the sympathetic nervous system. They consist of three paravertebral ganglia: superior cervical ganglion middle cervical ganglion inferior cervical ganglion. The inferior ganglion may be fused with the first thoracic ganglion to form a single structure, the stellate ganglion. Nerves emerging from cervical sympathetic ganglia contribute to the cardiac plexus, among other things. [WP,unvetted]." [Wikipedia:Cervical_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cervical canal ganglion" EXACT [OBOL:automatic]
synonym: "cervical canal of uterus ganglion" EXACT [OBOL:automatic]
synonym: "cervical sympathetic ganglion" EXACT []
synonym: "cervix ganglion" EXACT [OBOL:automatic]
synonym: "cervix of uterus ganglion" EXACT [OBOL:automatic]
synonym: "ganglion of cervical canal" EXACT [OBOL:automatic]
synonym: "ganglion of cervical canal of uterus" EXACT [OBOL:automatic]
synonym: "ganglion of cervix" EXACT [OBOL:automatic]
synonym: "ganglion of cervix of uterus" EXACT [OBOL:automatic]
synonym: "ganglion of neck of uterus" EXACT [OBOL:automatic]
synonym: "ganglion of uterine cervix" EXACT [OBOL:automatic]
synonym: "neck of uterus ganglion" EXACT [OBOL:automatic]
synonym: "uterine cervix ganglion" EXACT [OBOL:automatic]
xref: BTO:0000113
xref: FMA:6470
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png
xref: MA:0001153
is_a: UBERON:0001807 ! paravertebral ganglion
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000002
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0000002 ! uterine cervix
[Term]
id: UBERON:0001992
name: papillary layer of dermis
alt_id: UBERON:FMA_64776-MA_0000800
def: "Dense irregular connective tissue of the skin that consists of fibroblasts, various connective tissue cell types, and collagen, predominantly type III." [Wikipedia:Papillary_dermis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dermis papillary layer" EXACT []
synonym: "papillary dermis" EXACT []
xref: FMA:64776
xref: MA:0000800
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002067 ! dermis
[Term]
id: UBERON:0001993
name: reticular layer of dermis
alt_id: UBERON:FMA_64778-MA_0000801
def: "Dense irregular connective tissue that consists of elastic fibers and collagen, predominantly type I." [Wikipedia:Reticular_dermis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dermis reticular layer" EXACT []
synonym: "reticular dermis" EXACT []
xref: FMA:64778
xref: MA:0000801
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
relationship: part_of UBERON:0002067 ! dermis
[Term]
id: UBERON:0001994
name: hyaline cartilage
alt_id: UBERON:FMA_64783-MA_0000109
def: "Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel with a perichondrium." [Wikipedia:Hyaline_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hyaline cartilage tissue" EXACT []
xref: FMA:64783
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray292.png/200px-Gray292.png
xref: MA:0000109
xref: ncithesaurus:Hyaline_Cartilage
is_a: UBERON:0002418 ! cartilage
[Term]
id: UBERON:0001995
name: fibrocartilage
alt_id: UBERON:FMA_64784-MA_0000108
def: "a mixture of white fibrous tissue and cartilaginous tissue in various proportions. It owes its flexibility and toughness to the former of these constituents, and its elasticity to the latter. It is the only type of cartilage that contains type I collagen in addition to the normal type II[WP]. Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel without a well-defined perichondrium[FMA]." [Wikipedia:Fibrocartilage]
comment: The white fibrocartilages admit of arrangement into four groups—interarticular, connecting, circumferential, and stratiform -- WP. TODO: add mineralized
subset: uberon_slim
xref: FMA:64784
xref: galen:Fibrocartilage
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Gray295.png/200px-Gray295.png
xref: MA:0000108
xref: ncithesaurus:Fibrocartilage
is_a: UBERON:0002418 ! cartilage
[Term]
id: UBERON:0001996
name: elastic cartilage
alt_id: UBERON:FMA_64785-MA_0000107
def: "Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which consists of elastic fibers." [Wikipedia:Elastic_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:64785
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/ca/Gray904.png/200px-Gray904.png
xref: MA:0000107
xref: ncithesaurus:Elastic_Cartilage
is_a: UBERON:0002418 ! cartilage
[Term]
id: UBERON:0001997
name: olfactory epithelium
alt_id: UBERON:0004853
alt_id: UBERON:FMA_64803-ZFA_0000554
def: "Nasal epithelium wherein ciliated olfactory receptor neurons, supporting cells, and basal cells are located." [Wikipedia:Olfactory_epithelium, ZFIN:curator]
comment: TODO - check ZFA part of parentage. Add term for mucosa? FMA:77199
subset: uberon_slim
synonym: "nasal cavity olfactory epithelium" EXACT [MA:0001325]
synonym: "nasal epithelium" RELATED []
synonym: "nasal sensory epithelium" RELATED []
synonym: "olfactory mucosa" RELATED [GAID:303]
synonym: "olfactory sensory epithelium" EXACT []
synonym: "sensory olfactory epithelium" EXACT []
xref: BTO:0000108
xref: EFO:0001972
xref: EHDAA2:0001228
xref: FMA:64803
xref: HOG:0000985
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray857.png/200px-Gray857.png
xref: MA:0001325
xref: MAT:0000445
xref: ncithesaurus:Olfactory_Epithelium
xref: NIF_GrossAnatomy:birnlex_2703
xref: TAO:0000554
xref: ZFA:0000554
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa
is_a: UBERON:0005384 ! implied link automatically realized ! nasal cavity epithelium
relationship: develops_from UBERON:0003050 ! olfactory placode
relationship: part_of UBERON:0000010 ! peripheral nervous system
relationship: part_of UBERON:0001826 ! nasal cavity mucosa
[Term]
id: UBERON:0001998
name: sternocostal joint
alt_id: UBERON:FMA_64877-MA_0001512
def: "arthrodial joints, with the exception of the first, in which the cartilage is directly united with the sternum, and which is, therefore, a synarthrodial articulation." [Wikipedia:Sternocostal_joints]
comment: This class was created automatically from a combination of ontologies
synonym: "sternochondral joint" EXACT []
xref: FMA:7954
xref: GAID:271
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cc/Gray315.png/200px-Gray315.png
xref: MA:0001512
xref: ncithesaurus:Sternocostal_Joint
is_a: UBERON:0002001 ! joint of rib
relationship: part_of UBERON:0002228 ! rib
[Term]
id: UBERON:0001999
name: iliopsoas
alt_id: UBERON:FMA_64918-MA_0002321
def: "Anatomical cluster consisting of iliacus, psoas major, psoas minor[WP]." [Wikipedia:Iliopsoas]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hyrtl's muscle" EXACT []
xref: EHDAA2:0000812
xref: FMA:64918
xref: HOG:0001005
xref: MA:0002321
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002000
name: gluteal muscle
alt_id: UBERON:FMA_64922-MA_0000535
def: "." [Wikipedia:Gluteal_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000531
xref: FMA:64922
xref: MA:0000535
is_a: UBERON:0001497 ! muscle of pelvic girdle
[Term]
id: UBERON:0002001
name: joint of rib
alt_id: UBERON:FMA_64994-MA_0001508
def: "A skeletal joint that is part of a rib [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "rib joint" EXACT []
xref: FMA:64994
xref: MA:0001508
xref: ncithesaurus:Joint_of_the_Rib
is_a: UBERON:0000982 ! skeletal joint
is_a: UBERON:0005174 ! implied link automatically realized ! back organ
is_a: UBERON:0005175 ! implied link automatically realized ! chest organ
relationship: part_of UBERON:0002228
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002228 ! rib
[Term]
id: UBERON:0002002
name: interchondral joint
alt_id: UBERON:FMA_64996-MA_0001511
def: "contiguous borders of the sixth, seventh, and eighth, and sometimes those of the ninth and tenth, costal cartilages articulate with each other by small, smooth, oblong facets." [Wikipedia:Interchondral_joints]
comment: This class was created automatically from a combination of ontologies
xref: FMA:64996
xref: FMA:71378
xref: FMA:7955
xref: MA:0001511
is_a: UBERON:0002001 ! joint of rib
relationship: part_of UBERON:0002228 ! rib
[Term]
id: UBERON:0002003
name: peripheral nerve
alt_id: UBERON:FMA_65239-MA_0000228-XAO_0000204
def: "Neural tree (organ) which is directly continuous with the neuraxis. Examples: phrenic nerve, radial nerve, ilioinguinal nerve, sciatic nerve." [Wikipedia:Peripheral_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "peripheral nerve tree" EXACT []
xref: BTO:0001027
xref: FMA:65239
xref: GAID:747
xref: HOG:0000901
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Nervous_system_diagram.png/200px-Nervous_system_diagram.png
xref: MA:0000228
xref: ncithesaurus:Peripheral_Nerve
xref: NIF_GrossAnatomy:birnlex_1615
xref: XAO:0000204
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0003377 ! implied link automatically realized ! nerve of peripheral nervous system
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0002004
name: trunk of sciatic nerve
alt_id: UBERON:FMA_65507-MA_0001178
comment: This class was created automatically from a combination of ontologies
synonym: "sciatic nerve trunk" EXACT []
synonym: "sciatic neural trunk" EXACT []
xref: FMA:65507
xref: MA:0001178
is_a: UBERON:0001147 ! trunk of peripheral nerve
[Term]
id: UBERON:0002005
name: enteric nervous system
alt_id: UBERON:FMA_66070-MA_0000222-MIAA_0000102-ZFA_0001155
def: "The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation[GO]." [Wikipedia:Enteric_nervous_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "PNS - enteric" EXACT []
xref: BTO:0002506
xref: EFO:0000895
xref: FMA:66070
xref: GAID:799
xref: MA:0000222
xref: MAT:0000102
xref: MIAA:0000102
xref: NIF_GrossAnatomy:birnlex_1166
xref: TAO:0001155
xref: ZFA:0001155
is_a: UBERON:0002410 ! autonomic nervous system
relationship: part_of UBERON:0002410 ! autonomic nervous system
[Term]
id: UBERON:0002006
name: cortex of lymph node
alt_id: UBERON:FMA_66253-MA_0000740
def: "Peripheral portion of the lymph node, underneath the capsule[WP]." [Wikipedia:Cortex_of_lymph_node]
subset: uberon_slim
synonym: "lymph node cortex" EXACT []
xref: FMA:66253
xref: MA:0000740
xref: ncithesaurus:Lymph_Node_Cortex
is_a: UBERON:0001851 ! cortex
relationship: part_of UBERON:0000029
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002007
name: medulla of lymph node
alt_id: UBERON:FMA_66254-MA_0000745
def: "." [Wikipedia:Medulla_of_lymph_node]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lymph node medulla" EXACT []
xref: FMA:66254
xref: MA:0000745
is_a: UBERON:0000958 ! medulla
relationship: part_of UBERON:0000029
intersection_of: UBERON:0000958 ! medulla
intersection_of: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002008
name: cardiac nerve plexus
alt_id: UBERON:FMA_6628-MA_0001138
def: "a plexus of nerves situated at the base of the heart that innervate the heart." [Wikipedia:Cardiac_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "autonomic nerve plexus of heart" EXACT [OBOL:automatic]
synonym: "autonomic plexus of heart" EXACT [OBOL:automatic]
synonym: "cardiac plexus" EXACT []
synonym: "heart autonomic nerve plexus" EXACT [OBOL:automatic]
synonym: "heart autonomic plexus" EXACT [OBOL:automatic]
synonym: "heart visceral nerve plexus" EXACT [OBOL:automatic]
synonym: "heart visceral plexus" EXACT [OBOL:automatic]
synonym: "visceral nerve plexus of heart" EXACT [OBOL:automatic]
synonym: "visceral plexus of heart" EXACT [OBOL:automatic]
xref: FMA:6628
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png
xref: MA:0001138
xref: ncithesaurus:Cardiac_Nerve_Plexus
is_a: UBERON:0001816 ! autonomic nerve plexus
relationship: part_of UBERON:0000948
intersection_of: UBERON:0001816 ! autonomic nerve plexus
intersection_of: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002009
name: pulmonary nerve plexus
alt_id: UBERON:FMA_6629-MA_0001143
def: "The pulmonary plexus is an autonomic plexus formed from pulmonary branches of vagus nerve and the sympathetic trunk. It supplies the Bronchial tree. [WP,unvetted]." [Wikipedia:Pulmonary_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pulmonary plexus" EXACT []
xref: FMA:6629
xref: MA:0001143
is_a: UBERON:0001816 ! autonomic nerve plexus
relationship: part_of UBERON:0003728 ! mediastinum
[Term]
id: UBERON:0002010
name: celiac nerve plexus
alt_id: UBERON:FMA_6630-MA_0001139
def: "The celiac plexus, also known as the solar plexus, is a complex network of nerves located in the abdomen. The celiac plexus is located near where the celiac trunk, superior mesenteric artery, and renal arteries branch from the abdominal aorta. It is behind the stomach and the omental bursa and in front of the crura of the diaphragm, on the level of the first lumbar vertebra, L1. The plexus is formed (in part) by the greater and lesser splanchnic nerves of both sides, and also parts of the right vagus nerve. The celiac plexus proper consists of the celiac ganglia with a network of interconnecting fibers. The aorticorenal ganglia are often considered to be part of the celiac ganglia, and thus, part of the plexus. [WP,unvetted]." [Wikipedia:Celiac_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "celiac plexus" EXACT []
synonym: "coeliac nerve plexus" RELATED []
synonym: "coeliac plexus" EXACT []
xref: FMA:6630
xref: GAID:796
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png
xref: MA:0001139
is_a: UBERON:0001816 ! autonomic nerve plexus
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0002011
name: thoracodorsal artery
alt_id: UBERON:FMA_66320-MA_0002065
def: "The thoracodorsal artery is a branch of the subscapular artery. It travels inferiorly with the thoracodorsal nerve and supplies the latissimus dorsi. [WP,unvetted]." [Wikipedia:Thoracodorsal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:66320
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Latissimus_dorsi.png/200px-Latissimus_dorsi.png
xref: MA:0002065
xref: ncithesaurus:Thoracodorsal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002012
name: pulmonary artery
alt_id: UBERON:FMA_66326-MA_0002031
def: "The pulmonary arteries carry blood from heart to the lungs. They are the only arteries (other than umbilical arteries in the fetus) that carry deoxygenated blood. In the human heart, the pulmonary trunk (pulmonary artery or main pulmonary artery) begins at the base of the right ventricle. It is short and wide - approximately 5 cm (2 inches) in length and 3 cm (1.2 inches) in diameter. It then branches into two pulmonary arteries (left and right), which deliver deoxygenated blood to the corresponding lung. [WP,unvetted]." [Wikipedia:Pulmonary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pulmonary arterial tree" EXACT []
synonym: "pulmonary arterial tree organ part" EXACT []
xref: BTO:0000778
xref: EFO:0001399
xref: EHDAA:4351
xref: EHDAA2:0001575
xref: FMA:66326
xref: GAID:505
xref: galen:PulmonaryArtery
xref: HOG:0000982
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0002031
xref: ncithesaurus:Pulmonary_Artery
xref: OpenCyc:Mx4rvVjbIpwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002013
name: superior hypogastric nerve plexus
alt_id: UBERON:FMA_6642-MA_0001142
def: "The superior hypogastric plexus (in older texts, hypogastric plexus or presacral nerve) is a plexus of nerves situated on the vertebral bodies below the bifurcation of the aorta. [WP,unvetted]." [Wikipedia:Superior_hypogastric_plexus]
comment: Check relationship with generic hypogastric nerve/plexus
subset: uberon_slim
synonym: "hypogastric plexus" RELATED []
synonym: "presacral nerve" EXACT []
synonym: "superior hypogastric plexus" EXACT []
xref: FMA:6642
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png
xref: MA:0001142
is_a: UBERON:0001816 ! autonomic nerve plexus
relationship: adjacent_to UBERON:0001075 ! body of vertebra
relationship: overlaps UBERON:0005303 ! hypogastric nerve
[Term]
id: UBERON:0002014
name: inferior hypogastric nerve plexus
alt_id: UBERON:FMA_6643-MA_0001141
def: "The inferior hypogastric plexus (pelvic plexus in some texts) is a plexus of nerves that supplies the viscera of the pelvic cavity. The inferior hypogastric plexus is a paired structure, with each situated on the side of the rectum in the male, and at the sides of the rectum and vagina in the female. [WP,unvetted]." [Wikipedia:Inferior_hypogastric_plexus]
comment: Check relationship with generic hypogastric nerve/plexus
subset: uberon_slim
synonym: "inferior hypogastric plexus" EXACT []
synonym: "pelvic nerve plexus" EXACT []
synonym: "pelvic plexus" EXACT []
xref: FMA:6643
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray838.png/200px-Gray838.png
xref: MA:0001141
xref: ncithesaurus:Inferior_Hypogastric_Nerve_Plexus
is_a: UBERON:0001816 ! autonomic nerve plexus
relationship: overlaps UBERON:0005303 ! hypogastric nerve
[Term]
id: UBERON:0002015
name: fibrous capsule of kidney
alt_id: UBERON:FMA_66610-MA_0000370
def: "The renal capsule is a tough fibrous layer surrounding the kidney and covered in a thick layer of ' adipose tissue. It provides some protection from trauma and damage. The renal capsule relates to the other layers in the following order (moving from innermost to outermost): renal medulla renal cortex renal capsule perinephric fat (or 'perirenal fat') renal fascia paranephric fat (or 'pararenal fat') peritoneum (anteriorly), and transversalis fascia (posteriorly). [WP,unvetted]." [Wikipedia:Kidney_capsule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "capsule of kidney" EXACT []
synonym: "kidney capsule" EXACT []
synonym: "renal capsule" RELATED []
xref: FMA:66610
xref: galen:CapsuleOfKidney
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/69/Illu_kidney.jpg/200px-Illu_kidney.jpg
xref: MA:0000370
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0002016
name: pulmonary vein
alt_id: UBERON:FMA_66643-MA_0002206-XAO_0000394
def: "Pulmonary veins are blood vessels that transport blood from the lungs to the heart[GO]." [Wikipedia:Pulmonary_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pulmonary venous tree organ part" EXACT []
xref: BTO:0001799
xref: EHDAA:2629
xref: EHDAA2:0001579
xref: FMA:66643
xref: GAID:543
xref: galen:PulmonaryVein
xref: HOG:0001133
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0002206
xref: ncithesaurus:Pulmonary_Vein
xref: XAO:0000394
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002017
name: portal vein
alt_id: UBERON:FMA_66645-MA_0002198-XAO_0000392
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "portal venous tree organ part" EXACT []
xref: BTO:0001792
xref: EHDAA:6510
xref: EHDAA2:0001485
xref: FMA:66645
xref: GAID:540
xref: galen:PortalVein
xref: HOG:0000656
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Gray591.png/200px-Gray591.png
xref: MA:0002198
xref: ncithesaurus:Portal_Vein
xref: OpenCyc:Mx4rv_bem5wpEbGdrcN5Y29ycA
xref: XAO:0000392
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002018
name: synovial membrane
alt_id: UBERON:FMA_66762-MA_0000114
def: "Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints)." [Wikipedia:Synovial_membrane]
comment: TODO - check membrane vs sheath
subset: uberon_slim
synonym: "synovial layer" EXACT []
synonym: "synovial sheath" RELATED []
synonym: "synovium" EXACT []
xref: AEO:0000181
xref: BTO:0001823
xref: EFO:0001393
xref: EHDAA2:0003181
xref: FMA:66762
xref: GAID:264
xref: galen:SynovialMembrane
xref: HOG:0001282
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Synovium.png/200px-Synovium.png
xref: MA:0000114
xref: ncithesaurus:Synovial_Membrane
is_a: UBERON:0000042 ! serous membrane
[Term]
id: UBERON:0002019
name: spinal accessory nerve
alt_id: UBERON:FMA_6720-MA_0001088
def: "In mice, the spinal branch of this motor nerve innervates the trapezius and the sternocleidomastoid muscles. The cranial branch joins the vagus nerve and innervates the same targets as the vagus nerve[GO]." [Wikipedia:Spinal_accessory_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "accessory nerve" EXACT []
synonym: "Accessory nerve [XI]" EXACT []
synonym: "accessory XI" EXACT [EHDAA2:0000106]
synonym: "accessory XI nerve" EXACT []
synonym: "cervical accessory nerve" EXACT []
synonym: "spinal accessory nerve tree" EXACT []
synonym: "spinal part of accessory nerve" EXACT []
synonym: "Willis' nerve" EXACT []
xref: EHDAA2:0000106
xref: FMA:6720
xref: GAID:825
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Gray791.png/200px-Gray791.png
xref: MA:0001088
xref: ncithesaurus:Accessory_Nerve
xref: NIF_GrossAnatomy:birnlex_812
xref: OpenCyc:Mx4rwTEwI5wpEbGdrcN5Y29ycA
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0002020
name: gray matter of neuraxis
alt_id: UBERON:FMA_67242-MA_0001112
def: "Heterogeneous cluster of neural somas in the brain and the spinal cord." [Wikipedia:Gray_matter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gray matter" EXACT []
synonym: "grey matter" EXACT []
synonym: "grey substance" EXACT []
xref: AEO:0000136
xref: EHDAA2:0003136
xref: FMA:67242
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png
xref: MA:0001112
xref: ncithesaurus:Gray_Matter
xref: OpenCyc:Mx4rwDdKMpwpEbGdrcN5Y29ycA
xref: ZFA:0001681
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0002021
name: occipital lobe
alt_id: UBERON:FMA_67325-MA_0000913-ZFA_0001414
def: "Occipital lobe is the one of five lobes of the cerebral hemisphere which occupies the posterior-most portion of the hemisphere. Anteriorly, it shares an arbitrary border with the parietal lobe and temporal lobe. Medially, it is bounded by the longitudinal cerebral fissure." [Wikipedia:Occipital_lobe]
subset: uberon_slim
synonym: "occipital cortex" EXACT []
xref: BTO:0000293
xref: EFO:0000915
xref: FMA:67325
xref: GAID:678
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray727_occipital_lobe.png/200px-Gray727_occipital_lobe.png
xref: MA:0000913
xref: MAT:0000507
xref: ncithesaurus:Occipital_Lobe
xref: NIF_GrossAnatomy:birnlex_1136
xref: OpenCyc:Mx4rv9OFy5wpEbGdrcN5Y29ycA
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: adjacent_to UBERON:0001871 ! temporal lobe
relationship: adjacent_to UBERON:0001872 ! parietal lobe
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0002022
name: insula
alt_id: UBERON:FMA_67329-MA_0000909
def: "The insula is the one of five lobes of the cerebral hemisphere. It lies in the depths of the lateral fissure and is covered by portions of the frontal, parietal and temporal lobes." [Wikipedia:Insula]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "central lobe" EXACT []
synonym: "cortex of island" EXACT []
synonym: "insula lobule" EXACT []
synonym: "insular cortex" EXACT []
synonym: "insular lobe" EXACT []
synonym: "insular region" EXACT []
synonym: "island of reil" EXACT []
xref: BTO:0001105
xref: FMA:67329
xref: MA:0000909
xref: ncithesaurus:Central_Lobe
xref: NIF_GrossAnatomy:birnlex_1117
xref: OpenCyc:Mx4rvpK5WZwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0002023
name: claustrum
alt_id: UBERON:FMA_67440-MA_0000888
def: "Subdivision located in the telencephalon which is a member of the anatomical set 'Basal ganglia'. The claustrum is made up primarily of cellular neural tissue (gray matter), and is located lateral to the caudate nucleus and external capsule and medial to the insula." [Wikipedia:Claustrum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dorsal claustrum" EXACT []
synonym: "dorsal portion of claustrum" EXACT []
xref: FMA:67440
xref: MA:0000888
xref: ncithesaurus:Claustrum
xref: NIF_GrossAnatomy:birnlex_1522
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0002420 ! basal ganglion
[Term]
id: UBERON:0002024
name: internal carotid nerve plexus
alt_id: UBERON:FMA_67533-MA_0001162
def: "The internal carotid plexus (carotid plexus) is situated on the lateral side of the internal carotid artery, and in the plexus there occasionally exists a small gangliform swelling, the carotid ganglion, on the under surface of the artery. Postganglionic sympathetic fibres ascend from the superior cervical ganglion, along the walls of the internal carotid artery, to enter the internal carotid plexus. These fibres then distribute to deep structures, which include the levator palpebrae superioris and pupillary dilator muscles. Some of the fibres from the internal carotid plexus converge to form the deep petrosal nerve. The internal carotid plexus communicates with the semilunar ganglion, the abducent nerve, and the sphenopalatine ganglion; it distributes filaments to the wall of the carotid artery, and also communicates with the tympanic branch of the glossopharyngeal nerve. [WP,unvetted]." [Wikipedia:Internal_carotid_nerve_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "internal carotid plexus" EXACT []
xref: FMA:67533
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray840.png/200px-Gray840.png
xref: MA:0001162
xref: ncithesaurus:Internal_Carotid_Nerve_Plexus
is_a: UBERON:0001816 ! autonomic nerve plexus
[Term]
id: UBERON:0002025
name: basal cell layer of epidermis
alt_id: UBERON:FMA_67540-MA_0000803
def: "Deepest layer of the layers of the epidermis[WP]." [Wikipedia:Stratum_germinativum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "epidermis basal layer" RELATED []
synonym: "epidermis stratum basale" EXACT []
synonym: "epidermis stratum germinativum" RELATED []
synonym: "stratum basale of epidermis" EXACT []
synonym: "stratum basalis of epidermis" EXACT []
synonym: "stratum germinativum" EXACT []
xref: BTO:0000438
xref: FMA:67540
xref: MA:0000803
xref: XAO:0000041
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0002026
name: prickle cell layer of epidermis
alt_id: UBERON:FMA_67542-MA_0000807
def: "a layer of the epidermis found between the stratum granulosum and stratum basale. Has cells that produce and secrete bipolar lipids which prevent evaporation, helping to 'water-proof' the skin. Keratinization begins in the stratum spinosum." [Wikipedia:Stratum_spinosum]
comment: This class was created automatically from a combination of ontologies
synonym: "epidermis prickle cell layer" RELATED []
synonym: "epidermis stratum spinosum" EXACT []
synonym: "squamous cell layer of epidermis" EXACT []
synonym: "stratum malphighii" EXACT []
synonym: "stratum spinosum" EXACT []
synonym: "stratum spinosum of epidermis" EXACT []
xref: BTO:0000435
xref: FMA:67542
xref: MA:0000807
xref: ncithesaurus:Stratum_Spinosum
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: adjacent_to UBERON:0002025 ! basal cell layer of epidermis
relationship: adjacent_to UBERON:0002069 ! granular layer of epidermis
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0002027
name: horny layer of epidermis
alt_id: UBERON:FMA_67545-MA_0000804
def: "outermost layer of the epidermis, composed of large, flat, polyhedral, plate-like envelopes filled with keratin, which is made up of dead cells that have migrated up from the stratum granulosum." [Wikipedia:Stratum_corneum]
synonym: "epidermis stratum corneum" EXACT []
synonym: "stratum corneum" EXACT []
synonym: "stratum corneum of epidermis" EXACT []
xref: BTO:0000344
xref: FMA:67545
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Skinlayers.png/200px-Skinlayers.png
xref: MA:0000804
xref: ncithesaurus:Stratum_Corneum
is_a: UBERON:0003055 ! outermost layer of epidermis
[Term]
id: UBERON:0002028
name: hindbrain
alt_id: UBERON:FMA_67687-MA_0000195-MIAA_0000107-XAO_0000015-ZFA_0000029
def: "The most posterior of the three principal regions of the brain. In mammals and birds the hindbrain is divided into a rostral metencephalon and a caudal myelencephalon. In zebrafish, with the exception of the cerebellum, the ventral remainder of the metencephalon can be separated only arbitrarily from the more caudal myelencephalic portion of the medulla oblongata (From: Neuroanatomy of the Zebrafish Brain)[ZFA]. Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata[FMA]." [Wikipedia:Hindbrain, ZFA:0000029, ZFIN:curator]
subset: uberon_slim
synonym: "rhombencephalon" RELATED []
xref: BTO:0000672
xref: EFO:0000923
xref: EHDAA:3514
xref: EHDAA:6487
xref: EHDAA2:0000746
xref: FMA:67687
xref: HOG:0000070
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png
xref: MA:0000195
xref: MAT:0000107
xref: MIAA:0000107
xref: NIF_GrossAnatomy:birnlex_942
xref: TAO:0000029
xref: XAO:0000015
xref: ZFA:0000029
is_a: UBERON:0004732 ! segmental subdivision of nervous system
is_a: UBERON:0004733 ! implied link automatically realized ! segmental subdivision of hindbrain
relationship: develops_from UBERON:0003076 ! posterior neural tube
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002029
name: epithelium of gall bladder
alt_id: UBERON:FMA_67711-MA_0001632
def: "the simple columnar epithelial lining of the gall bladder." [MP:0009492]
comment: This class was created automatically from a combination of ontologies
synonym: "biliary epithelium" RELATED []
synonym: "epithelial tissue of gall bladder" EXACT [OBOL:automatic]
synonym: "epithelial tissue of gallbladder" EXACT [OBOL:automatic]
synonym: "epithelium of gallbladder" EXACT [OBOL:automatic]
synonym: "gall bladder epithelial tissue" EXACT [OBOL:automatic]
synonym: "gall bladder epithelium" EXACT []
synonym: "gallbladder epithelial tissue" EXACT [OBOL:automatic]
synonym: "gallbladder epithelium" EXACT [OBOL:automatic]
xref: BTO:0001449
xref: FMA:67711
xref: MA:0001632
xref: ncithesaurus:Gallbladder_Epithelium
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0004808 ! implied link automatically realized ! gastrointestinal system epithelium
relationship: part_of UBERON:0002110
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002110 ! gallbladder
relationship: part_of UBERON:0002110 ! gallbladder
[Term]
id: UBERON:0002030
name: nipple
alt_id: UBERON:FMA_67771-MA_0000796
def: "Projection of skin containing the outlets for 15-20 lactiferous ducts arranged cylindrically around the tip." [Wikipedia:Nipple]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "papilla mammae" EXACT [MP:0009723]
synonym: "papilla of breast" EXACT []
synonym: "papillary part of breast" EXACT []
synonym: "teat" EXACT []
synonym: "thele" EXACT [MP:0009723]
synonym: "thelium" EXACT [MP:0009723]
xref: BTO:0000821
xref: FMA:67771
xref: GAID:35
xref: galen:Nipple
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/59/Female_nipple_profile.jpg/200px-Female_nipple_profile.jpg
xref: MA:0000796
xref: ncithesaurus:Nipple
xref: OpenCyc:Mx4rvVjKi5wpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0002031
name: epithelium of bronchus
alt_id: UBERON:FMA_67782-MA_0001839
def: "An epithelium that is part of a bronchus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchi epithelial tissue" EXACT [OBOL:automatic]
synonym: "bronchi epithelium" EXACT [OBOL:automatic]
synonym: "bronchial epithelium" EXACT []
synonym: "bronchial trunk epithelial tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk epithelium" EXACT [OBOL:automatic]
synonym: "bronchus epithelial tissue" EXACT [OBOL:automatic]
synonym: "bronchus epithelium" EXACT []
synonym: "epithelial tissue of bronchi" EXACT [OBOL:automatic]
synonym: "epithelial tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "epithelial tissue of bronchus" EXACT [OBOL:automatic]
synonym: "epithelium of bronchi" EXACT [OBOL:automatic]
synonym: "epithelium of bronchial trunk" EXACT [OBOL:automatic]
xref: BTO:0001845
xref: EFO:0000307
xref: FMA:67782
xref: MA:0001839
xref: ncithesaurus:Bronchial_Epithelium
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0004815 ! implied link automatically realized ! lower respiratory tract epithelium
relationship: part_of UBERON:0002185
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0002032
name: areola
alt_id: UBERON:FMA_67796-MA_0000788
def: "Subdivision of breast which consists of skin, connective tissue and smooth muscle bundle and modified sebaceous glands and which surrounds the nipple." [Wikipedia:Areola]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:67796
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Brustwarze.JPG/200px-Brustwarze.JPG
xref: MA:0000788
xref: ncithesaurus:Areola
xref: OpenCyc:Mx4rvrcOL5wpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0002033
name: arrector muscle of hair
alt_id: UBERON:FMA_67821-MA_0000778
def: "tiny muscle fiber attached to each hair follicle, which contract to make the hairs stand on end, causing goose bumps. They exist in most mammals including humans." [http://en.wikipedia.org/wiki/Arrector_pili, Wikipedia:Arrector_pili]
subset: uberon_slim
synonym: "arrector pili" EXACT [FMA:67821, MA:0000778]
synonym: "arrector pili muscle" EXACT [EMAPA:26779, MP:0010679]
xref: EMAPA:26771
xref: EMAPA:26775
xref: EMAPA:26779
xref: FMA:67821
xref: MA:0000778
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: attached_to UBERON:0002073 ! hair follicle
[Term]
id: UBERON:0002034
name: suprachiasmatic nucleus
alt_id: UBERON:FMA_67883-MA_0000843-ZFA_0000441
def: "The suprachiasmatic nucleus, or nuclei, (SCN), a tiny region on the brain's midline in a shallow impression of the optic chiasm, is responsible for controlling endogenous circadian rhythms. The neuronal and hormonal activities it generates regulate many different body functions over a 24-hour period. The SCN, pine cone shaped and the size of a grain of rice, interacts with many other regions of the brain. It contains several cell types and several different peptides and neurotransmitters. [WP,unvetted]." [Wikipedia:Suprachiasmatic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "suprachiasmatic nucleus of hypothalamus" EXACT []
xref: BTO:0001822
xref: EFO:0002475
xref: FMA:67883
xref: GAID:645
xref: HOG:0000036
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MA:0000843
xref: ncithesaurus:Suprachiasmatic_Nucleus
xref: NIF_GrossAnatomy:birnlex_1325
xref: TAO:0000441
xref: ZFA:0000441
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0001928 ! preoptic area
relationship: part_of UBERON:0002272 ! medial zone of hypothalamus
[Term]
id: UBERON:0002035
name: medial preoptic nucleus
alt_id: UBERON:FMA_67890-MA_0000840
def: "The preoptic area is a region of the hypothalamus. According to the MeSH classification, it is considered part of the anterior hypothalamus. [WP,unvetted]." [Wikipedia:Medial_preoptic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "medial preoptic area" EXACT []
synonym: "medial preoptic hypothalamic nucleus" EXACT []
xref: FMA:67890
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MA:0000840
xref: NIF_GrossAnatomy:birnlex_706
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001928 ! preoptic area
[Term]
id: UBERON:0002036
name: striated muscle tissue
alt_id: UBERON:FMA_67905-MA_0002438
def: "Tissue which consists of striated muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue, Cardiac muscle tissue[FMA]." [FMA:67905, Wikipedia:Striated_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "striated muscle" EXACT []
xref: AEO:0000140
xref: FMA:67905
xref: galen:StriatedMuscle
xref: MA:0002438
xref: ncithesaurus:Striated_Muscle_Tissue
xref: OpenCyc:Mx4rwAoze5wpEbGdrcN5Y29ycA
is_a: UBERON:0002385 ! muscle tissue
[Term]
id: UBERON:0002037
name: cerebellum
alt_id: UBERON:FMA_67944-FMA_78469-MA_0000196-MA_0000198-MIAA_0000110-XAO_0003098-XAO_0003099-ZFA_0000100-ZFA_0000110
def: "Organ component of neuraxis that has as its parts the cerebellar cortex, cerebellar nuclear complex and cerebellar white matter. Examples: There is only one cerebellum. // Specialized brain region derived from the dorsal metencephalon (anterior hindbrain, and perhaps including posterior midbrain) and becoming distinctive late in the segmentation period. Kimmel et al, 1995. // Fluid-filled brain cavity. Kimmel et al, 1995." [Wikipedia:Cerebellum, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "epencephalon-1" EXACT []
synonym: "hindbrain ventricle" RELATED []
synonym: "rhombencephalic ventricle" RELATED []
xref: BTO:0000232
xref: EFO:0000327
xref: FMA:67944
xref: GAID:595
xref: HOG:0000024
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Cerebellum_NIH.png/200px-Cerebellum_NIH.png
xref: MA:0000198
xref: MAT:0000110
xref: MIAA:0000110
xref: ncithesaurus:Cerebellum
xref: NIF_GrossAnatomy:birnlex_1489
xref: OpenCyc:Mx4rvl1eipwpEbGdrcN5Y29ycA
xref: TAO:0000100
xref: XAO:0003098
xref: ZFA:0000100
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum
relationship: part_of UBERON:0001895 ! metencephalon
[Term]
id: UBERON:0002038
name: substantia nigra
alt_id: UBERON:FMA_67947-MA_0000210
def: "Subdivision of the midbrain anterior to the midbrain tegmentum which contains darkly pigmented neurons." [Wikipedia:Substantia_nigra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nucleus of basis pedunculi" EXACT []
synonym: "Soemmering's substance" EXACT []
xref: BTO:0000143
xref: EFO:0000922
xref: FMA:67947
xref: GAID:581
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Midbraincrosssection.png/200px-Midbraincrosssection.png
xref: MA:0000210
xref: MAT:0000504
xref: ncithesaurus:Substantia_Nigra
xref: NIF_GrossAnatomy:birnlex_789
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
relationship: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001900 ! subthalamus
[Term]
id: UBERON:0002039
name: inferior phrenic vein
alt_id: UBERON:FMA_68068-MA_0002195
def: "The Inferior Phrenic Veins drain the diaphragm and follow the course of the inferior phrenic arteries; the right ends in the inferior vena cava; the left is often represented by two branches, one of which ends in the left renal or suprarenal vein, while the other passes in front of the esophageal hiatus in the diaphragm and opens into the inferior vena cava. [WP,unvetted]." [Wikipedia:Inferior_phrenic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:68068
xref: MA:0002195
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002040
name: bronchial artery
alt_id: UBERON:FMA_68109-MA_0001923
def: "In human anatomy, the bronchial arteries help supply the lungs with oxygenated blood. Although there is much variation, there are usually two bronchial arteries that run to the left lung, and one to the right lung. [WP,unvetted]." [Wikipedia:Bronchial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bronchial arterial tree" EXACT []
xref: FMA:68109
xref: GAID:477
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Gray1032.png/200px-Gray1032.png
xref: MA:0001923
xref: ncithesaurus:Bronchial_Artery
xref: OpenCyc:Mx4r4sy0UiNbEd2AAAACs6hRXg
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002041
name: terminal bronchus
alt_id: UBERON:FMA_68416-MA_0000440
comment: This class was created automatically from a combination of ontologies
xref: FMA:68416
xref: MA:0000440
is_a: UBERON:0002185 ! bronchus
[Term]
id: UBERON:0002042
name: endothelium of lymphatic vessel
alt_id: UBERON:FMA_68444-MA_0000750
def: "An endothelium that is part of a lymphatic vessel [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "endothelium of lymph vessel" EXACT [OBOL:automatic]
synonym: "lymph vessel endothelium" EXACT [OBOL:automatic]
synonym: "lymphatic vessel endothelium" EXACT []
xref: FMA:68444
xref: MA:0000750
xref: ncithesaurus:Lymphatic_Vessel_Endothelium
xref: ZFA:0005258
is_a: UBERON:0001986 ! endothelium
is_a: UBERON:0004852 ! implied link automatically realized ! cardiovascular system endothelium
relationship: part_of UBERON:0001473
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001473 ! lymphatic vessel
relationship: part_of UBERON:0001473 ! lymphatic vessel
[Term]
id: UBERON:0002043
name: dorsal raphe nucleus
alt_id: UBERON:FMA_68462-ZFA_0000366
def: "A large raphe nucleus extending from the anterior part of the pons through the mesencephalon; its neurons are serotoninergic[NIF]. The dorsal raphe nucleus is a part of the raphe nucleus and consists of rostral and caudal subdivisions. The rostral aspect of the dorsal raphe is further divided into interfascicular, ventral, ventrolateral and dorsal subnuclei. The projections of the dorsal raphe have been found to vary topographically, and thus the subnuclei differ in their projections. An increased number of cells in the lateral aspects of the dorsal raphe is characteristic of humans and other primates. [WP,unvetted]." [NIF_GrossAnatomy:birnlex_982, Wikipedia:Dorsal_raphe_nucleus]
comment: TODO check dorsal vs inferior. ZF has no pons.
subset: uberon_slim
synonym: "cell group b7" EXACT []
synonym: "dorsal nucleus of the raphe" EXACT []
synonym: "dorsal nucleus raphe" EXACT []
synonym: "inferior raphe nucleus" EXACT []
synonym: "posterior raphe nucleus" RELATED []
xref: BTO:0002434
xref: EFO:0001919
xref: FMA:68462
xref: http://upload.wikimedia.org/wikipedia/en/thumb/c/c6/Drn.png/200px-Drn.png
xref: MA:0002980
xref: NIF_GrossAnatomy:birnlex_982
xref: TAO:0000366
xref: ZFA:0000366
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002044
name: ventral nucleus of posterior commissure
alt_id: UBERON:FMA_68464-MA_0001072
comment: This class was created automatically from a combination of ontologies
synonym: "Darkshevich's nucleus" EXACT []
synonym: "nucleus of darkschewitsch" EXACT []
xref: FMA:68464
xref: MA:0001072
xref: NIF_GrossAnatomy:birnlex_896
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0000936 ! posterior commissure
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002045
name: cuneate nucleus
alt_id: UBERON:FMA_68465-MA_0001035
def: "One of the dorsal column nuclei, the cuneate nucleus is a wedge-shaped nucleus in the closed part of the medulla oblongata. It contains cells that give rise to the cuneate tubercle, visible on the posterior aspect of the medulla. It lies laterally to the gracile nucleus and medial to the spinal trigeminal nucleus in the medulla. [WP,unvetted]." [Wikipedia:Cuneate_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Burdach's nucleus" EXACT []
xref: FMA:68465
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png
xref: MA:0001035
xref: ncithesaurus:Cuneate_Nucleus
xref: NIF_GrossAnatomy:birnlex_2640
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002046
name: thyroid gland
alt_id: UBERON:FMA_68805-FMA_9603-MA_0000129-MA_0000726-MIAA_0000081-XAO_0000162-ZFA_0001072
def: "A two-lobed endocrine gland found in all vertebrates, located in front of and on either side of the trachea in humans, and producing various hormones, such as triiodothyronine and calcitonin[BTO]. A highly vascular endocrine gland consisting of two lobes, one on either side of the trachea, joined by a narrow isthmus; it produces the thyroid hormones which are concerned in regulating the metabolic rate of the body[GAID]." [BTO:0001379, GAID:465, Wikipedia:Thyroid]
subset: uberon_slim
synonym: "thyroid" EXACT []
xref: BTO:0001379
xref: EFO:0000861
xref: EHDAA:2148
xref: EHDAA:2975
xref: EHDAA2:0002028
xref: FMA:9603
xref: GAID:465
xref: galen:ThyroidGland
xref: HOG:0000418
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Illu_endocrine_system.jpg/200px-Illu_endocrine_system.jpg
xref: MA:0000129
xref: MAT:0000081
xref: MIAA:0000081
xref: ncithesaurus:Thyroid_Gland
xref: OpenCyc:Mx4rvVjLT5wpEbGdrcN5Y29ycA
xref: XAO:0000162
is_a: UBERON:0002368 ! implied link automatically realized ! endocrine gland
is_a: UBERON:0002530 ! gland
relationship: develops_from UBERON:0003091 ! thyroid primordium
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0002047
name: pontine raphe nucleus
alt_id: UBERON:FMA_68875-MA_0001022
def: "The Pontine raphe nucleus is one of the raphe nuclei. It is located in the pontine tegmentum. [WP,unvetted]." [Wikipedia:Pontine_raphe_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "raphe of pons" EXACT []
synonym: "raphe pontis nucleus" RELATED []
xref: FMA:68875
xref: MA:0001022
xref: NIF_GrossAnatomy:birnlex_1110
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0003023 ! pontine tegmentum
[Term]
id: UBERON:0002048
name: lung
alt_id: UBERON:FMA_68877-FMA_7195-MA_0000415-MIAA_0000135-XAO_0000119
def: "Respiration organ present in all air-breathing animals whose principal function is to transport oxygen from the atmosphere into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere." [BTO:0000763, Wikipedia:Lung]
comment: respiration organ in all air-breathing animals, including most tetrapods, a few fish and a few snails. In mammals and the more complex life forms, the two lungs are located in the chest on either side of the heart. Their principal function is to transport oxygen from the atmosphere into the bloodstream, and to release carbon dioxide from the bloodstream into the atmosphere. This exchange of gases is accomplished in the mosaic of specialized cells that form millions of tiny, exceptionally thin-walled air sacs called alveoli. // Avian lungs do not have alveoli as mammalian lungs do, they have Faveolar lungs. They contain millions of tiny passages known as para-bronchi, connected at both ends by the dorsobronchi // Snakes and limbless lizards typically possess only the right lung as a major respiratory organ; the left lung is greatly reduced, or even absent. Amphisbaenians, however, have the opposite arrangement, with a major left lung, and a reduced or absent right lung [WP]
subset: uberon_slim
xref: AAO:0000275
xref: BTO:0000763
xref: EFO:0000934
xref: EHDAA:1554
xref: EHDAA:2205
xref: EHDAA2:0001042
xref: FMA:7195
xref: GAID:345
xref: galen:Lung
xref: MA:0000415
xref: MAT:0000135
xref: MIAA:0000135
xref: ncithesaurus:Lung
xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA
xref: XAO:0000119
is_a: UBERON:0000171 ! respiration organ
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0005178 ! implied link automatically realized ! thoracic cavity organ
relationship: develops_from UBERON:0000118 ! lung bud
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0002049
name: vasculature
alt_id: UBERON:FMA_69050-XAO_0001010-ZFA_0001079
def: "an interconnected tubular multi-tissue structure contains fluid that is actively transported around the organism[ZFA]. Anatomical system that has as its parts the blood and lymph vessels." [Wikipedia:Vasculature, XB:curator]
comment: check XAO
subset: uberon_slim
synonym: "vascular network" EXACT []
synonym: "vascular system" EXACT []
xref: BTO:0003718
xref: FMA:69050
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Circulatory_System_en.svg/200px-Circulatory_System_en.svg.png
xref: MA:0002718
xref: ZFA:0005249
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0000062 ! organ
relationship: part_of UBERON:0001009 ! circulatory system
relationship: part_of UBERON:0004535 ! cardiovascular system
[Term]
id: UBERON:0002050
name: embryonic structure
alt_id: UBERON:FMA_69067-XAO_0003042-ZFA_0001105
def: "An anatomical structure that exists only before the organism is fully formed. // Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells." [BTO:0000174, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "developing embryonic structure" EXACT [FBbt:00004208]
synonym: "developing structure" RELATED []
synonym: "embryonic anatomical structure" EXACT [EHDAA2:0003169]
xref: AAO:0000138
xref: BILA:0000034
xref: BTO:0000174
xref: EFO:0000461
xref: EHDAA2:0003169
xref: FBbt:00004208
xref: FMA:69067
xref: GAID:407
xref: ncithesaurus:Embryonic_Structure
xref: TAO:0001105
xref: XAO:0003042
xref: ZFA:0001105
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0005423 ! implied link automatically realized ! developing anatomical structure
relationship: part_of UBERON:0000922
intersection_of: UBERON:0005423 ! developing anatomical structure
intersection_of: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0002051
name: epithelium of bronchiole
alt_id: UBERON:FMA_69077-MA_0001772
def: "An epithelium that is part of a bronchiole [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchiole epithelial tissue" EXACT [OBOL:automatic]
synonym: "bronchiole epithelium" EXACT []
synonym: "epithelial tissue of bronchiole" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lobular bronchiole" EXACT [OBOL:automatic]
synonym: "epithelium of lobular bronchiole" EXACT [OBOL:automatic]
synonym: "lobular bronchiole epithelial tissue" EXACT [OBOL:automatic]
synonym: "lobular bronchiole epithelium" EXACT [OBOL:automatic]
xref: FMA:62497
xref: FMA:69077
xref: MA:0001772
xref: ncithesaurus:Bronchiole_Epithelium
is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa
relationship: part_of UBERON:0002186
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002186 ! bronchiole
relationship: part_of UBERON:0002186 ! bronchiole
relationship: part_of UBERON:0005039 ! mucosa of bronchiole
[Term]
id: UBERON:0002052
name: capsule of adrenal gland
alt_id: UBERON:FMA_69087-MA_0000117
comment: This class was created automatically from a combination of ontologies
synonym: "adrenal gland capsule" EXACT []
xref: FMA:69087
xref: MA:0000117
xref: ncithesaurus:Adrenal_Gland_Capsule
is_a: UBERON:0003893 ! capsule
relationship: surrounds UBERON:0002369
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0002369 ! adrenal gland
relationship: surrounds UBERON:0002369 ! adrenal gland
[Term]
id: UBERON:0002053
name: zona glomerulosa of adrenal gland
alt_id: UBERON:FMA_69225-MA_0001891
def: "The zona glomerulosa of the adrenal gland is the most superficial layer of the adrenal cortex, lying directly beneath the adrenal gland's capsule. Its cells are ovoid in shape and are arranged in clusters or arches. In response to increased potassium levels, renin or decreased blood flow to the kidneys, cells of the zona glomerulosa produce and secrete the mineralocorticoid aldosterone into the blood as part of the renin-angiotensin system. Aldosterone regulates the body's concentration of electrolytes, primarily sodium and potassium, by acting on the distal convoluted tubule of kidney nephrons to: increase sodium reabsorption increase potassium excretion increase water reabsorption through osmosis The enzyme aldosterone synthase acts in this location. [WP,unvetted]." [Wikipedia:Zona_glomerulosa]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adrenal gland zona glomerulosa" EXACT []
synonym: "zona glomerulosa" EXACT []
synonym: "zona glomerulosa of suprarenal gland" EXACT []
xref: BTO:0000048
xref: FMA:69225
xref: GAID:449
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png
xref: MA:0001891
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001235 ! adrenal cortex
[Term]
id: UBERON:0002054
name: zona fasciculata of adrenal gland
alt_id: UBERON:FMA_69234-MA_0001890
def: "The zona fasciculata constitutes the middle zone of the adrenal cortex, sitting directly beneath the zona glomerulosa. Constituent cells are organized into bundles or 'fascicles'. The zona fasciculata chiefly produces glucocorticoids (mainly cortisol in the human), which regulates the metabolism of glucose, especially in times of stress (e.g. , part of the fight-or-flight response). This tissue also generates a small amount of weak androgens. In certain animals such as rodents, the lack of 17alpha-hydroxylase results in the synthesis of corticosterone instead of cortisol. Steroid-producing adrenal tumours and hyperplasias of the zona fasciculata result in excess cortisol production and are the cause for adrenal Cushing's syndrome. The genetic disorder McCune-Albright syndrome can also present Cushing's syndrome in affected patients. [WP,unvetted]." [Wikipedia:Zona_fasciculata]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adrenal gland zona fasciculata" EXACT []
synonym: "zona fasciculata" EXACT []
synonym: "zona fasciculata of suprarenal gland" EXACT []
xref: BTO:0000050
xref: FMA:69234
xref: GAID:448
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png
xref: MA:0001890
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001235 ! adrenal cortex
[Term]
id: UBERON:0002055
name: zona reticularis of adrenal gland
alt_id: UBERON:FMA_69236-MA_0001892
def: "The zona reticularis is the innermost layer of the adrenal cortex, lying deep to the zona fasciculata and superficial to the adrenal medulla. The cells are arranged cords that project in different directions giving a net-like appearance (L. reticulum - net). Cells in the zona reticularis produce precursor androgens including dehydroepiandrosterone (DHEA) and androstenedione from cholesterol. DHEA is further converted to DHEA-sulfate via a sulfotransferase, SULT2A1. These precursors are not further converted in the adrenal cortex as the cells lack 3β-hydroxysteroid dehydrogenase. Instead, they are released into the blood stream and taken up in the testis and ovaries to produce testosterone and the estrogens respectively. In some animals like rodents, the reticularis layer does contain 3β-hydroxysteroid dehydrogenase, which along with other enzymes present results in the production of corticosteroids like the fasciculata. In rodents too, the lack of 17alpha-hydroxylase results in the synthesis of corticosterone instead of cortisol as in the human. [WP,unvetted]." [Wikipedia:Zona_reticularis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adrenal gland zona reticularis" EXACT []
synonym: "zona reticularis" EXACT []
synonym: "zona reticularis of suprarenal gland" EXACT []
xref: FMA:69236
xref: GAID:450
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray1185.png/200px-Gray1185.png
xref: MA:0001892
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001235 ! adrenal cortex
[Term]
id: UBERON:0002056
name: inferior suprarenal artery
alt_id: UBERON:FMA_69264-MA_0002056
def: "Each renal artery gives off some small inferior suprarenal branches to the suprarenal gland, the ureter, and the surrounding cellular tissue and muscles. [WP,unvetted]." [Wikipedia:Inferior_suprarenal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:69264
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/61/Gray1121.png/200px-Gray1121.png
xref: MA:0002056
xref: ncithesaurus:Inferior_Suprarenal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002057
name: phrenic artery
alt_id: UBERON:FMA_69330-MA_0002019
def: "The inferior phrenic arteries are two small vessels, which supply the diaphragm but present much variety in their origin. They may arise separately from the front of the aorta, immediately above the celiac artery, or by a common trunk, which may spring either from the aorta or from the celiac artery. Sometimes one is derived from the aorta, and the other from one of the renal arteries; they rarely arise as separate vessels from the aorta. They diverge from one another across the crura of the diaphragm, and then run obliquely upward and lateralward upon its under surface. The left phrenic passes behind the esophagus, and runs forward on the left side of the esophageal hiatus. The right phrenic passes behind the inferior vena cava, and along the right side of the foramen which transmits that vein. Near the back part of the central tendon each vessel divides into a medial and a lateral branch. The medial branch curves forward, and anastomoses with its fellow of the opposite side, and with the musculophrenic and pericardiacophrenic arteries. The lateral branch passes toward the side of the thorax, and anastomoses with the lower intercostal arteries, and with the musculophrenic. The lateral branch of the right phrenic gives off a few vessels to the inferior vena cava; and the left one, some branches to the esophagus. Each vessel gives off superior suprarenal branches to the suprarenal gland of its own side. The spleen and the liver also receive a few twigs from the left and right vessels respectively. [WP,unvetted]." [Wikipedia:Phrenic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:69330
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/af/Gray531.png/200px-Gray531.png
xref: MA:0002019
xref: ncithesaurus:Phrenic_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002058
name: ciliary ganglion
alt_id: UBERON:FMA_6964-MA_0001136
def: "The ciliary ganglion is a parasympathetic ganglion located in the posterior orbit. It measures 1–2 millimeters in diameter and contains approximately 2,500 neurons. Preganglionic axons from the Edinger-Westphal nucleus form synapses with these cells. The postganglionic axons run in the short ciliary nerves and innervate two eye muscles: the sphincter pupillae constricts the pupil, know as Miosis. The opposite, Mydriasis, is the dilation of the pupil. the ciliaris muscle contracts, releasing tension on the Zonular Fibers, making the lens more convex, also known as accommodation. Both of these muscles are involuntary – they are controlled by the autonomic nervous system. It is one of four parasympathetic ganglia of the head and neck.. [WP,unvetted]." [Wikipedia:Ciliary_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EFO:0002559
xref: FMA:6964
xref: HOG:0000805
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Augennerven.jpg/200px-Augennerven.jpg
xref: MA:0001136
xref: NIF_GrossAnatomy:nlx_anat_100304
is_a: UBERON:0001808 ! parasympathetic ganglion
[Term]
id: UBERON:0002059
name: submandibular ganglion
alt_id: UBERON:FMA_6966-MA_0002470
def: "The submandibular ganglion (or submaxillary ganglion in older texts) is part of the human autonomic nervous system. It is one of four parasympathetic ganglia of the head and neck.. [WP,unvetted]." [Wikipedia:Submandibular_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001318
xref: FMA:6966
xref: http://upload.wikimedia.org/wikipedia/en/thumb/8/83/Gray778.png/200px-Gray778.png
xref: MA:0002470
xref: ncithesaurus:Submandibular_Ganglion
is_a: UBERON:0001808 ! parasympathetic ganglion
[Term]
id: UBERON:0002060
name: femoral artery
alt_id: UBERON:FMA_70248-MA_0001951
def: "The femoral artery is a large artery in the muscles of the thigh. It is a continuation of external iliac artery where it enters the femoral triangle at the mid inguinal point behind the inguinal ligament. It leaves femoral triangle through apex beneath the sartorius muscle. It enters the popliteal fossa by passing through the 5th osseo-aponeurotic(adductor hiatus) opening of adductor magnus where it becomes the Popliteal Artery. [WP,unvetted]." [Wikipedia:Femoral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001624
xref: FMA:70248
xref: GAID:494
xref: galen:FemoralArtery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray546.png/200px-Gray546.png
xref: MA:0001951
xref: ncithesaurus:Femoral_Artery
xref: OpenCyc:Mx4rwHMI05wpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002061
name: truncus arteriosus
alt_id: UBERON:FMA_70301-MA_0000103
def: "The truncus arteriosus and bulbus cordis are divided by the aorticopulmonary septum. The truncus arteriosus gives rise to the ascending aorta and the pulmonary trunk. The bulbus cordis gives rise to the smooth parts (outflow tract) of the left and right ventricles." [Wikipedia:Truncus_arteriosus_(embryology)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:70301
xref: GAID:554
xref: MA:0000103
xref: OpenCyc:Mx4rquH9YKgNEdudWQACs5b6Bw
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002062
name: endocardial cushion
alt_id: UBERON:FMA_70302-MA_0000078-ZFA_0001317
def: "The endocardial cushion is a specialized region of mesenchymal cells that will give rise to the heart septa and valves[GO]. Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves[ZFA]." [GO:0003197, Wikipedia:Endocardial_cushion, ZFIN:curator]
comment: GO graph seems to suggest this is an endothelium. WP: The endocardial cushions are thought to arise from a subset of endothelial cells that undergo epithelial to mesenchymal transformation, a process whereby these cells break cell-to-cell contacts and migrate into the cardiac jelly (towards to interior of the heart tube). Latest (2010-06-01) new def suggested for GO, added above.
subset: uberon_slim
synonym: "endocardial cushion tissue" EXACT [EHDAA2:0000434]
synonym: "endocardial cushions" RELATED []
xref: EHDAA2:0000434
xref: FMA:70302
xref: HOG:0000932
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray465.png/200px-Gray465.png
xref: MA:0000078
xref: TAO:0001317
xref: ZFA:0001317
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0002165 ! endocardium
[Term]
id: UBERON:0002063
name: sinus venosus
alt_id: UBERON:FMA_70303-ZFA_0000154
def: "a large quadrangular cavity which precedes the atrium on the venous side of the chordate heart. In humans, it exists distinctly only in the embryonic heart, where it is found between the two venae cavae. In the adult, it is incorporated into the wall of the right atrium to form a smooth part called the sinus venarum, also known as the venarum sinus, which is separated from the rest of the atrium by a ridge of fibres called the crista terminalis[Wikipedia]. Heart region collecting blood from the paired common cardinal veins and delivering to the atrium. One of four heart chambers, the sinus venosus also acts as a pacemaker and is the first to contract. Kimmel et al, 1995." [Wikipedia:Sinus_venosus, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:480
xref: EHDAA2:0001839
xref: FMA:70303
xref: HOG:0000177
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray465.png/200px-Gray465.png
xref: ncithesaurus:Sinus_Venosus
xref: TAO:0000154
xref: ZFA:0000154
is_a: UBERON:0004151 ! cardiac chamber
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002064
name: common cardinal vein
alt_id: UBERON:FMA_70308-ZFA_0000186
def: "Bilaterally paired longitudinal vein; the anterior cardinal returns blood from the head, and the posterior cardinal returns it from the trunk; these two vessels join together on each side as the common cardinal vein (duct of Cuvier; misnamed the vitelline vein) that leads across the yolk cell to the heart's sinus venosus. Kimmel et al, 1995." [Wikipedia:Common_cardinal_vein, ZFIN:curator]
comment: TODO check synonym XAO-related, ZFA-exact
subset: uberon_slim
synonym: "duct of Cuvier" RELATED []
xref: EHDAA:1314
xref: EHDAA2:0000304
xref: EMAP:1352
xref: EMAP:1874
xref: EMAP:2464
xref: EMAP:3104
xref: EMAP:3715
xref: EMAP:4445
xref: EMAP:591
xref: EMAP:929
xref: EMAPA:16356
xref: FMA:70308
xref: HOG:0000112
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray477.svg/200px-Gray477.svg.png
xref: ncithesaurus:Common_Cardinal_Vein
xref: TAO:0000186
xref: XAO:0000373
xref: ZFA:0000186
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
is_a: UBERON:0004344 ! cardinal vein
relationship: part_of UBERON:0002201 ! vasculature of trunk
[Term]
id: UBERON:0002065
name: postcardinal vein
alt_id: UBERON:FMA_70314-ZFA_0000477
def: "Continuation of the caudal vein cranial to the anal pore. The cardinal vein splits into a pair of vessels in the cranial trunk, just caudal to the radix of the aorta. The posterior cardinals each empty into the common cardinal vein. " [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "axial vein" RELATED []
synonym: "caudal cardinal veins" RELATED []
synonym: "PCV" RELATED []
synonym: "posterior cardinal vein" EXACT []
xref: EHDAA:1316
xref: EHDAA2:0001486
xref: EMAPA:16357
xref: FMA:70314
xref: HOG:0000111
xref: ncithesaurus:Posterior_Cardinal_Vein
xref: TAO:0000477
xref: XAO:0000241
xref: ZFA:0000477
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
is_a: UBERON:0004344 ! cardinal vein
relationship: part_of UBERON:0002201 ! vasculature of trunk
[Term]
id: UBERON:0002066
name: umbilical vein
alt_id: UBERON:FMA_70317-MA_0002249
def: "The umbilical vein is a blood vessel present during fetal development that carries oxygenated blood from the placenta to the growing fetus. [WP,unvetted]." [Wikipedia:Umbilical_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001509
xref: EFO:0001940
xref: EHDAA:1034
xref: EHDAA:488
xref: EHDAA2:0002107
xref: FMA:70317
xref: GAID:542
xref: HOG:0000015
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Gray502.png/200px-Gray502.png
xref: MA:0002249
xref: ncithesaurus:Umbilical_Vein
xref: OpenCyc:Mx4rdu17MmWaEd2AAABQjYGu0g
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002067
name: dermis
alt_id: UBERON:FMA_70323-MA_0000152-MIAA_0000153-XAO_0000217-ZFA_0001119
def: "Dense irregular connective tissue which consists of a papillary layer and a reticular layer. // A collagenous layer of the skin subjacent to the epidermis and covering the hypodermis. It contains various types of cells (e.g. fibroblasts, pigment cells, nerve, blood vessels and scales. Le Guellec et al, 2004." [Wikipedia:Dermis, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0000128
xref: BTO:0000294
xref: EFO:0000953
xref: FMA:70323
xref: GAID:1321
xref: HOG:0000108
xref: MA:0000152
xref: MAT:0000153
xref: MIAA:0000153
xref: ncithesaurus:Dermis
xref: TAO:0001119
xref: XAO:0000217
xref: ZFA:0001119
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0002097 ! skin of body
relationship: part_of UBERON:0002199 ! integument
[Term]
id: UBERON:0002068
name: urachus
alt_id: UBERON:FMA_70343-MA_0001701
def: "The urachus is an embryological canal connecting the urinary bladder of the fetus with the allantois, a structure that contributes to the formation of the umbilical cord. The lumen (inside) of the urachus is normally obliterated during embryonic development, transforming the urachus into a solid cord, a functionless remnant. The urachus lies in the space of Retzius, between the transversalis fascia anteriorly and the peritoneum posteriorly. [WP,unvetted]." [Wikipedia:Urachus]
comment: TODO check. Wikipedia and DBPedia disagree - is this a remnant of the allantois?
subset: uberon_slim
xref: EHDAA:7016
xref: EHDAA:9332
xref: EHDAA2:0002138
xref: FMA:70343
xref: GAID:1313
xref: HOG:0000735
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray1156.png/200px-Gray1156.png
xref: MA:0001701
xref: ncithesaurus:Urachus
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0002069
name: granular layer of epidermis
alt_id: UBERON:FMA_70344-MA_0000805
def: "A layer of the epidermis found between the stratum corneum (and possibly stratum lucidum) and stratum spinosum.[1] In this layer, keratinocytes are now called granular cells, and contain keratohyalin and lamellar granules." [Wikipedia:Stratum_granulosum]
comment: This class was created automatically from a combination of ontologies
synonym: "epidermis granular layer" RELATED []
synonym: "epidermis stratum granulosum" EXACT []
synonym: "stratum granulosum" EXACT []
synonym: "stratum granulosum of epidermis" EXACT []
xref: BTO:0000361
xref: FMA:70344
xref: MA:0000805
xref: ncithesaurus:Stratum_Granulosum
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0002070
name: superior pancreaticoduodenal artery
alt_id: UBERON:FMA_70437-MA_0002015
def: "The superior pancreaticoduodenal artery is an artery that supplies blood to the duodenum and pancreas. It is a branch of the gastroduodenal artery, which comes from the common hepatic artery of the celiac trunk. The common hepatic itself becomes the proper hepatic after giving off the gastroduodenal artery and goes on to supply the right and left lobes of the liver. The term superior distinguishes the superior pancreaticoduodenal artery from the inferior pancreaticoduodenal artery, which a branch of the superior mesenteric artery. These arteries, together with the pancreatic branches of the splenic artery, form connections or anastomoses with one another, allowing blood to perfuse the pancreas and duodenum through multiple channels. The artery splits into two branches: the anterior superior pancreaticoduodenal artery supplies the anterior margins of the duodenum and pancreas the posterior superior pancreaticoduodenal artery supplies the posterior margins of these organs [WP,unvetted]." [Wikipedia:Superior_pancreaticoduodenal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "superior pancreatico-duodenal artery" EXACT []
xref: FMA:70437
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Gray533.png/200px-Gray533.png
xref: MA:0002015
xref: ncithesaurus:Superior_Pancreatico-Duodenal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002071
name: stratum lucidum of epidermis
alt_id: UBERON:FMA_70540-MA_0000806
def: "the layer of lightly staining corneocytes foud between the stratum granulosum and stratum corneum layers; found primarily in the thick epidermis of the palmar and plantar skin and is composed of three to five layers of dead, flattened keratinocytes." [MP:0009610]
comment: This class was created automatically from a combination of ontologies
synonym: "epidermis stratum lucidum" EXACT []
synonym: "stratum conjunctum of epidermis" EXACT []
xref: FMA:70540
xref: MA:0000806
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0002072
name: hypodermis
alt_id: UBERON:FMA_70544-MIAA_0000418-ZFA_0000117-ZFA_0001136
def: "Lowermost layer of the integumentary system in vertebrates. Types of cells that are found in the hypodermis are fibroblasts, adipose cells, and macrophages. It is derived from the mesoderm, but unlike the dermis, it is not derived from the dermatome region of the mesoderm. In arthropods, the hypodermis is an epidermal layer of cells that secretes the chitinous cuticle. The term also refers to a layer of cells lying immediately below the epidermis of plants. This cell is also used to supervise the outer skin from burns and other such articulates. The hypodermis is used mainly for fat storage[WP]. A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells[FMA]." [Wikipedia:Hypodermis, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hypoderm" EXACT []
synonym: "subcutaneous tissue" EXACT []
synonym: "subcutis" RELATED []
synonym: "superficial fascia" EXACT []
xref: BTO:0000313
xref: FMA:70544
xref: GAID:929
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png
xref: ncithesaurus:Superficial_Fascia
xref: TAO:0001136
xref: ZFA:0001136
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0002199 ! integument
[Term]
id: UBERON:0002073
name: hair follicle
alt_id: UBERON:FMA_70660-MA_0000154
def: "a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open[GO]." [Wikipedia:Hair_follicle]
comment: TODO - add new class for MA:0002910 vibrissa follicle
subset: uberon_slim
synonym: "vibrissa follicle" RELATED [MP:0010234]
xref: BTO:0000554
xref: EFO:0002464
xref: FMA:70660
xref: GAID:934
xref: HOG:0001268
xref: MA:0000154
xref: ncithesaurus:Hair_Follicle
xref: OpenCyc:Mx4rvVjOI5wpEbGdrcN5Y29ycA
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: overlaps UBERON:0001037 ! strand of hair
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0002074
name: hair shaft
alt_id: UBERON:FMA_70728-MA_0000159
def: "The non-growing portion of a hair which protrudes from the skin, i.e., from the follicle[BTO]. the cuticle, and/or cortex and/or medulla of a hair[MP]." [BTO:0004672, MP:0003809]
comment: TODO - add distinct subclasses for coat hair vs vibrissa hair
xref: BTO:0004672
xref: FMA:70728
xref: MA:0000159
is_a: UBERON:0000021 ! cutaneous appendage
relationship: part_of UBERON:0001037 ! strand of hair
[Term]
id: UBERON:0002075
name: viscus
alt_id: UBERON:FMA_7085-XAO_0003034
def: "An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen. // An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper." [BTO:0001491, Wikipedia:Viscus]
comment: general anatomical term in FMA.
subset: uberon_slim
synonym: "viscera" RELATED []
xref: BTO:0001491
xref: FMA:7085
xref: XAO:0003034
is_a: UBERON:0005177 ! implied link automatically realized ! trunk organ
relationship: part_of UBERON:0002100
relationship: part_of UBERON:0002323
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002100 ! trunk
intersection_of: part_of UBERON:0002323 ! body cavity
[Term]
id: UBERON:0002076
name: cuticle of hair
alt_id: UBERON:FMA_70933-MA_0000157
comment: This class was created automatically from a combination of ontologies
synonym: "hair cuticle" EXACT []
xref: FMA:70933
xref: MA:0000157
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001037 ! strand of hair
[Term]
id: UBERON:0002077
name: cortex of hair
alt_id: UBERON:FMA_70934-MA_0000156
def: "A cortex that is part of a hair [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "coat hair cortex" EXACT [OBOL:automatic]
synonym: "coat/hair cortex" EXACT [OBOL:automatic]
synonym: "cortex of coat hair" EXACT [OBOL:automatic]
synonym: "cortex of coat/hair" EXACT [OBOL:automatic]
synonym: "hair cortex" EXACT []
xref: FMA:70934
xref: MA:0000156
is_a: UBERON:0001851 ! cortex
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001037
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0001037 ! strand of hair
relationship: part_of UBERON:0001037 ! strand of hair
[Term]
id: UBERON:0002078
name: right atrium
alt_id: UBERON:FMA_7096-MA_0000075
def: "Right cardiac chamber which is continuous with the superior vena cava and inferior vena cava." [Wikipedia:Right_atrium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cardiac right atrium" EXACT []
synonym: "heart right atrium" EXACT []
synonym: "right atrium of heart" EXACT []
synonym: "right cardiac atrium" EXACT []
xref: BTO:0001703
xref: FMA:7096
xref: galen:RightAtrium
xref: HOG:0000328
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000075
xref: ncithesaurus:Right_Atrium
xref: OpenCyc:Mx4runNcs6fqEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw
xref: XAO:0003192
is_a: UBERON:0002081 ! implied link automatically realized ! cardiac atrium
relationship: in_right_side_of UBERON:0000948
intersection_of: UBERON:0002081 ! cardiac atrium
intersection_of: in_right_side_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002079
name: left atrium
alt_id: UBERON:FMA_7097-MA_0000074
def: "Left cardiac chamber which is continuous with the pulmonary venous trunk." [Wikipedia:Left_atrium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cardiac left atrium" EXACT []
synonym: "heart left atrium" EXACT []
synonym: "left atrium of heart" EXACT []
synonym: "left cardiac atrium" EXACT []
xref: BTO:0001702
xref: FMA:7097
xref: galen:LeftAtrium
xref: HOG:0000369
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000074
xref: ncithesaurus:Left_Atrium
xref: OpenCyc:Mx4rkJN1AagEEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw
xref: XAO:0003191
is_a: UBERON:0002081 ! implied link automatically realized ! cardiac atrium
relationship: in_left_side_of UBERON:0000948
intersection_of: UBERON:0002081 ! cardiac atrium
intersection_of: in_left_side_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002080
name: right ventricle
alt_id: UBERON:FMA_7098-MA_0000093
def: "Right cardiac chamber which is continuous with the pulmonary arterial trunk." [Wikipedia:Right_ventricle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cardiac right ventricle" EXACT []
synonym: "heart right ventricle" EXACT []
synonym: "right ventricle of heart" EXACT []
xref: BTO:0001630
xref: FMA:7098
xref: galen:RightVentricle
xref: HOG:0000717
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000093
xref: ncithesaurus:Right_Ventricle
xref: OpenCyc:Mx4rRMlc0KgNEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjj1pwpEbGdrcN5Y29ycA
is_a: UBERON:0002082 ! implied link automatically realized ! cardiac ventricle
relationship: in_right_side_of UBERON:0000948
intersection_of: UBERON:0002082 ! cardiac ventricle
intersection_of: in_right_side_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002081
name: cardiac atrium
alt_id: UBERON:FMA_7099-MA_0000073
def: "Cardiac chamber which consists of a wall that surrounds the cavity of an atrium." [Wikipedia:Heart_atrium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "atrium of heart" EXACT []
synonym: "Cardiac atria" EXACT PLURAL []
synonym: "heart atrium" EXACT []
xref: EFO:0000314
xref: FMA:7099
xref: GAID:555
xref: HOG:0000175
xref: MA:0000073
xref: ncithesaurus:Cardiac_Atrium
xref: TAO:0000471
xref: ZFA:0000471
is_a: UBERON:0001050 ! atrium
is_a: UBERON:0004151 ! cardiac chamber
relationship: part_of UBERON:0000948
intersection_of: UBERON:0001050 ! atrium
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002082
name: cardiac ventricle
alt_id: UBERON:FMA_7100-MA_0000091-ZFA_0000009
def: "Cardiac chamber which consists of a wall that surrounds the cavity of a ventricle. // One of four heart chambers." [Wikipedia:Cardiac_ventricle, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "heart ventricle" EXACT []
synonym: "lower chamber of heart" EXACT []
synonym: "ventricle" RELATED []
synonym: "ventricle of heart" EXACT []
xref: BTO:0000862
xref: EFO:0000317
xref: EHDAA2:0002178
xref: FMA:7100
xref: GAID:568
xref: HOG:0000435
xref: MA:0000091
xref: ncithesaurus:Cardiac_Ventricle
xref: OpenCyc:Mx4rvVjj1pwpEbGdrcN5Y29ycA
xref: TAO:0000009
xref: XAO:0003193
xref: ZFA:0000009
is_a: UBERON:0002300 ! ventricle
is_a: UBERON:0004151 ! cardiac chamber
relationship: part_of UBERON:0000948
intersection_of: UBERON:0002300 ! ventricle
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002083
name: ductus venosus
alt_id: UBERON:FMA_71007-MA_0002111
def: "In the fetus, the ductus venosus shunts a significant majority (80%) of the blood flow of the umbilical vein directly to the inferior vena cava. Thus, it allows oxygenated blood from the placenta to bypass the liver. In conjunction with the other fetal shunts, the foramen ovale and ductus arteriosus, it plays a critical role in preferentially shunting oxygenated blood to the fetal brain. The ductus venosus is open at the time of the birth and is the reason why umbilical vein catheterization works. Ductus venosus naturally closes during the first week of life in most full-term neonates; however, it may take much longer to close in pre-term neonates. Functional closure occurs within minutes of birth. Structural closure in term babies occurs within 3 to 7 days. After it closes, the remnant is known as ligamentum venosum[WP]." [Wikipedia:Ductus_venosus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:5402
xref: EHDAA2:0000422
xref: FMA:71007
xref: HOG:0000924
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Gray502.png/200px-Gray502.png
xref: MA:0002111
xref: ncithesaurus:Ductus_Venosus
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0002084
name: left ventricle
alt_id: UBERON:FMA_7101-MA_0000092
def: "Left cardiac chamber which is continuous with the aorta." [Wikipedia:Left_ventricle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cardiac left ventricle" EXACT []
synonym: "heart left ventricle" EXACT []
synonym: "left ventricle of heart" EXACT []
xref: BTO:0001629
xref: FMA:7101
xref: galen:LeftVentricle
xref: HOG:0000718
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000092
xref: ncithesaurus:Left_Ventricle
xref: OpenCyc:Mx4rtW8v46gEEdudWQACs5b6Bw
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjj1pwpEbGdrcN5Y29ycA
is_a: UBERON:0002082 ! implied link automatically realized ! cardiac ventricle
relationship: in_left_side_of UBERON:0000948
intersection_of: UBERON:0002082 ! cardiac ventricle
intersection_of: in_left_side_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002085
name: interatrial septum
alt_id: UBERON:FMA_7108-MA_0000084
def: "Cardiac septum which separates the right atrium from the left atrium." [Wikipedia:Interatrial_septum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "atrial septum" EXACT []
synonym: "interatrial septal wall" EXACT []
xref: EHDAA:1896
xref: EHDAA2:0000838
xref: FMA:7108
xref: galen:InteratrialSeptum
xref: HOG:0000385
xref: MA:0000084
xref: ncithesaurus:Interatrial_Septum
xref: OpenCyc:Mx4rpd49nLYEEduAAAACs2IKfQ
xref: OpenCyc:Mx4rwGvku5wpEbGdrcN5Y29ycA
is_a: UBERON:0002099 ! implied link automatically realized ! cardiac septum
relationship: adjacent_to UBERON:0002078
relationship: adjacent_to UBERON:0002079
intersection_of: UBERON:0002099 ! cardiac septum
intersection_of: adjacent_to UBERON:0002078 ! right atrium
intersection_of: adjacent_to UBERON:0002079 ! left atrium
[Term]
id: UBERON:0002086
name: sinoatrial valve
alt_id: UBERON:FMA_71120-ZFA_0000680
comment: This class was created automatically from a combination of ontologies
xref: FMA:71120
xref: TAO:0000680
xref: ZFA:0000680
is_a: UBERON:0000946 ! cardial valve
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0002062 ! endocardial cushion
relationship: part_of UBERON:0002063 ! sinus venosus
relationship: part_of UBERON:0002081 ! cardiac atrium
[Term]
id: UBERON:0002087
name: atrioventricular canal
alt_id: UBERON:FMA_71121-ZFA_0001315
def: "The part of the heart connecting the atrium to the cardiac ventricle[ZFA]. In the developing heart, the constriction between the atrium and ventricle constitutes the atrial canal, and indicates the site of the future atrioventricular valves[WP]." [Wikipedia:Atrioventricular_canal, ZFA:0001315]
subset: uberon_slim
synonym: "atrial canal" EXACT [Wikipedia:Atrial_canal]
synonym: "AV canal" EXACT []
xref: EHDAA2:0000152
xref: FMA:71121
xref: HOG:0001473
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d8/Gray464.png/200px-Gray464.png
xref: TAO:0001315
xref: ZFA:0001315
is_a: UBERON:0002050 ! embryonic structure
relationship: connects UBERON:0002081 ! cardiac atrium
relationship: connects UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002088
name: lateral thoracic vein
alt_id: UBERON:FMA_71210-MA_0002162
def: "The lateral thoracic vein is a tributary of the axillary vein. It runs with the lateral thoracic artery and drains the Serratus anterior muscle and the Pectoralis major muscle. Normally, the thoracoepigastric vein exists between this vein and superficial epigastric vein (a tributary of femoral vein), to act as a shunt for blood if the portal system (through the liver) develops hypertension or a blockage. [WP,unvetted]." [Wikipedia:Lateral_thoracic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:71210
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray576.png/200px-Gray576.png
xref: MA:0002162
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002089
name: thoracodorsal vein
alt_id: UBERON:FMA_71213-MA_0002238
comment: This class was created automatically from a combination of ontologies
xref: FMA:71213
xref: MA:0002238
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002090
name: postcranial axial skeleton
alt_id: UBERON:FMA_71221-MA_0000308-MIAA_0000148-XAO_0003073-ZFA_0000317
def: "The post-cranial subdivision of skeleton structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins; in human consists of the bones of the vertebral column, the thoracic cage and the pelvis[ZFA+FMA]." [https://sourceforge.net/tracker/?func=detail&aid=2983975&group_id=76834&atid=974957, https://sourceforge.net/tracker/?func=detail&atid=1205376&aid=2983977&group_id=76834, ZFA:0000317]
comment: previous some AOs had used the term 'axial skeleton' to include the skull. This is being resolved (see tracker items above)
subset: uberon_slim
synonym: "axial skeleton" BROAD [MA:0000308]
synonym: "post-cranial axial skeleton" EXACT []
xref: AAO:0000034
xref: EHDAA:5049
xref: EHDAA2:0000161
xref: HOG:0000317
xref: MA:0000308
xref: MAT:0000148
xref: MIAA:0000148
xref: TAO:0000317
xref: XAO:0003073
xref: ZFA:0000317
is_a: UBERON:0000075 ! subdivision of skeletal system
relationship: develops_from UBERON:0003089 ! sclerotome
relationship: part_of UBERON:0005944 ! axial skeleton
[Term]
id: UBERON:0002091
name: appendicular skeleton
alt_id: UBERON:FMA_71222-MA_0000290-MIAA_0000278-ZFA_0000027
def: "Subdivision of skeleton which consists of the bones of the upper and lower limbs/appendages." [Wikipedia:Appendicular_skeleton]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "paired fin skeleton" NARROW SENSU []
xref: AAO:0000747
xref: EFO:0000951
xref: FMA:71222
xref: MA:0000290
xref: MAT:0000278
xref: MIAA:0000278
xref: ncithesaurus:Appendicular_Skeleton
xref: TAO:0000027
xref: XAO:0003166
xref: ZFA:0000027
is_a: UBERON:0000075 ! subdivision of skeletal system
relationship: has_part UBERON:0002428 ! limb bone
[Term]
id: UBERON:0002092
name: cranial dura mater
alt_id: UBERON:FMA_71236-MA_0000815
def: "the fibrous membrane forming the outer of the three coverings that surrounds the brain within the cranial cavity; consists of two layers including the periosteal layer and the meningeal layer." [MP:0009025]
comment: This class was created automatically from a combination of ontologies
synonym: "brain dura mater" EXACT []
synonym: "dura mater of brain" EXACT []
xref: FMA:71236
xref: HOG:0000270
xref: MA:0000815
xref: ncithesaurus:Cerebral_Dura_Mater
is_a: UBERON:0002363 ! dura mater
is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx
relationship: part_of UBERON:0000955
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002093
name: spinal dura mater
alt_id: UBERON:FMA_71237-MA_0001132
def: "A dura mater that is part of a spinal cord [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "dura mater of neuraxis of spinal cord" EXACT [OBOL:automatic]
synonym: "dura mater of spinal cord" EXACT []
synonym: "spinal cord dura mater" EXACT []
synonym: "spinal cord dura mater of neuraxis" EXACT [OBOL:automatic]
xref: FMA:71237
xref: HOG:0000411
xref: MA:0001132
xref: ncithesaurus:Spinal_Cord_Dura_Mater
is_a: UBERON:0002363 ! dura mater
is_a: UBERON:0003292 ! implied link automatically realized ! meninx of spinal cord
relationship: part_of UBERON:0002240
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002094
name: interventricular septum
alt_id: UBERON:FMA_7133-MA_0000085
def: "Cardiac septum which separates the right ventricle from the left ventricle." [Wikipedia:Interventricular_septum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "heart ventricular septum" EXACT [MA:0000085]
synonym: "ventricular septum" RELATED [MA:0000085]
xref: BTO:0002483
xref: EFO:0001956
xref: EHDAA:2603
xref: EHDAA2:0000885
xref: FMA:7133
xref: galen:InterventricularSeptum
xref: HOG:0000386
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray498.png/200px-Gray498.png
xref: MA:0000085
xref: ncithesaurus:Interventricular_Septum
xref: OpenCyc:Mx4rwA7lp5wpEbGdrcN5Y29ycA
is_a: UBERON:0002099 ! implied link automatically realized ! cardiac septum
relationship: adjacent_to UBERON:0002080
relationship: adjacent_to UBERON:0002084
intersection_of: UBERON:0002099 ! cardiac septum
intersection_of: adjacent_to UBERON:0002080 ! right ventricle
intersection_of: adjacent_to UBERON:0002084 ! left ventricle
[Term]
id: UBERON:0002095
name: mesentery
alt_id: UBERON:FMA_7144-XAO_0000138-ZFA_0005129
def: "Anatomical organ component composed of a double layer of serous membrane that suspends a viscus from the body wall or connects adjacent viscera and in doing so conveys blood vessels, lymphatics and nerves to and from the viscera. Examples: greater omentum, broad ligament of uterus, sigmoid mesocolon. // A double layer composed of peritoneum that attaches the visceral organs to the body wall." [Wikipedia:Mesentery, ZFIN:curator]
comment: TODO - check. Consider FMA:259286 - Region of mesentery
subset: uberon_slim
xref: BTO:0001380
xref: EHDAA:2943
xref: EHDAA:2999
xref: EHDAA:3017
xref: EHDAA:3031
xref: EHDAA:3838
xref: EHDAA:3919
xref: EHDAA:3932
xref: EHDAA:3945
xref: EHDAA:3955
xref: EHDAA:3969
xref: EHDAA:432
xref: FMA:7144
xref: GAID:21
xref: galen:Mesentery
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray1038.png/200px-Gray1038.png
xref: ncithesaurus:Mesentery
xref: TAO:0005129
xref: XAO:0000138
xref: ZFA:0005129
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002358 ! peritoneum
[Term]
id: UBERON:0002097
name: skin of body
alt_id: UBERON:FMA_7163-MA_0000151-MIAA_0000284-XAO_0000023
def: "Nonparenchymatous organ that consists of the dermis and epidermis. Subdivisions of the skin surround various body parts; as a whole, the skin constitutes the external layer of the body. Examples: There is only one skin. // Surface structure that consists of the external membranous integument of the animal." [OMD:skin, Wikipedia:Skin]
comment: Note that FMA uses 'skin' for the entire organ. XAO seems consistent. MA seems to use it analagously to zone of skin
subset: uberon_slim
synonym: "entire skin" EXACT []
synonym: "integument" RELATED []
synonym: "skin" RELATED []
xref: BTO:0001253
xref: EFO:0000962
xref: EHDAA2:0001844
xref: FMA:7163
xref: galen:Skin
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Skin.svg/200px-Skin.svg.png
xref: ncithesaurus:Skin
xref: OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA
xref: XAO:0000023
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002199 ! integument
[Term]
id: UBERON:0002098
name: apex of heart
alt_id: UBERON:FMA_7164-MA_0000488
def: "The apex of the heart is the lowest superficial part of the heart. It is directed downward, forward, and to the left, and is overlapped by the left lung and pleura. [WP,unvetted]." [Wikipedia:Apex_of_heart]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cardiac apex" EXACT []
synonym: "heart apex" EXACT []
xref: FMA:7164
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png
xref: MA:0000488
is_a: UBERON:0000015 ! anatomical boundary
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002099
name: cardiac septum
alt_id: UBERON:FMA_7180-MA_0000083
def: "Septum of organ which has as its parts the membranous and muscular parts that separates the right side of the heart from the left side of the heart." [Wikipedia:Heart_septum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cardiac septa" EXACT PLURAL []
synonym: "heart septa" EXACT PLURAL []
synonym: "heart septum" EXACT []
synonym: "septum of heart" EXACT []
xref: FMA:7180
xref: GAID:562
xref: MA:0000083
xref: ncithesaurus:Heart_Septum
is_a: UBERON:0003037 ! septum
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000948
intersection_of: UBERON:0003037 ! septum
intersection_of: part_of UBERON:0000948 ! heart
relationship: develops_from UBERON:0002342 ! neural crest
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002100
name: trunk
alt_id: UBERON:FMA_7181-MIAA_0000296-XAO_0003025-ZFA_0001115
def: "Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the ribcage, thoracic and lumbar vertebral column, sacrum and coccyx, it is partially surrounded by skin of trunk. Examples: There is only one trunk. // Organism subdivision that is the part of the body posterior to the head and anterior to the tail. // Organism subdivision which is the part of the body posterior to the head and anterior to the tail." [Wikipedia:Torso, ZFA:0001115, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "torso" EXACT []
xref: BILA:0000116
xref: BTO:0001493
xref: EFO:0000966
xref: FMA:7181
xref: galen:Trunk
xref: MA:0000004
xref: MAT:0000296
xref: MIAA:0000296
xref: ncithesaurus:Trunk
xref: OpenCyc:Mx4rvVkJjpwpEbGdrcN5Y29ycA
xref: TAO:0001115
xref: XAO:0003025
xref: ZFA:0001115
is_a: UBERON:0000475 ! organism subdivision
relationship: has_part UBERON:0000915 ! thorax
relationship: has_part UBERON:0000916 ! abdomen
[Term]
id: UBERON:0002101
name: limb
alt_id: UBERON:FMA_7182-MA_0000007-MIAA_0000090-XAO_0003027
subset: uberon_slim
synonym: "limb sensu vertebrata" EXACT [MAT:0000090]
synonym: "tetrapod limb" EXACT []
xref: EFO:0000876
xref: EHDAA:1697
xref: EHDAA:8273
xref: EHDAA2:0003172
xref: FMA:7182
xref: GAID:36
xref: galen:Extremity
xref: HOG:0000336
xref: MA:0000007
xref: MAT:0000090
xref: MIAA:0000090
xref: ncithesaurus:Limb
xref: OpenCyc:Mx4rvn1uSZwpEbGdrcN5Y29ycA
xref: XAO:0003027
is_a: UBERON:0004708 ! limb/fin
[Term]
id: UBERON:0002102
name: forelimb
alt_id: UBERON:FMA_7183-MA_0000025-MIAA_0000394-XAO_0003030
def: "anterior-most limb on a body. Note distinction between arm and forelimb. hand is part of forelimb, but not part of arm" [BTO:0001729, ISBN:0471209627, Wikipedia:Forelimb]
comment: TODO - check free upper limb vs upper limb in FMA. Both MA and FMA consider shoulder (and shoulder bones) part of upper limb.
subset: uberon_slim
synonym: "anteriormost limb" EXACT []
synonym: "fore limb" EXACT []
synonym: "foreleg" RELATED []
synonym: "forelimb" EXACT []
synonym: "superior member" EXACT []
synonym: "upper extremity" EXACT []
synonym: "upper limb" EXACT []
xref: AAO:0000205
xref: BTO:0001729
xref: EFO:0000882
xref: EHDAA:6208
xref: EHDAA2:0002133
xref: FMA:7183
xref: GAID:1215
xref: GAID:51
xref: galen:UpperExtremity
xref: HOG:0000338
xref: MA:0000025
xref: MAT:0000394
xref: MIAA:0000394
xref: ncithesaurus:Upper_Extremity
xref: XAO:0003030
is_a: UBERON:0002101 ! limb
is_a: UBERON:0004710 ! implied link automatically realized ! limb/fin of anterior region of body
relationship: anterior_to UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0000153 ! anterior region of body
[Term]
id: UBERON:0002103
name: hindlimb
alt_id: UBERON:FMA_7184-MA_0000026-MIAA_0000395-XAO_0003031
def: "A posterior limb on an animal." [ISBN:0471209627, Wikipedia:Lower_limb]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hind limb" EXACT []
synonym: "hindlimb" EXACT []
synonym: "inferior member" EXACT []
synonym: "lower extremity" EXACT []
synonym: "lower limb" EXACT []
xref: AAO:0000219
xref: BTO:0002345
xref: EFO:0000883
xref: EHDAA:6094
xref: EHDAA2:0001033
xref: FMA:7184
xref: GAID:1221
xref: GAID:38
xref: galen:LowerExtremity
xref: HOG:0000337
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Gray1239.png/200px-Gray1239.png
xref: MA:0000026
xref: MAT:0000395
xref: MIAA:0000395
xref: ncithesaurus:Lower_Extremity
xref: XAO:0003031
is_a: UBERON:0002101 ! limb
is_a: UBERON:0004709 ! implied link automatically realized ! limb/fin of posterior region of body
relationship: part_of UBERON:0000154 ! posterior region of body
[Term]
id: UBERON:0002104
name: visual system
alt_id: UBERON:FMA_7191-MA_0002444-ZFA_0001127
def: "." [Wikipedia:Visual_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "visual organ system" EXACT []
xref: AAO:0000632
xref: FMA:7191
xref: MA:0002444
xref: ncithesaurus:Visual_System
xref: OpenCyc:Mx4rvViCtpwpEbGdrcN5Y29ycA
xref: TAO:0001127
xref: XAO:0003198
xref: ZFA:0001127
is_a: UBERON:0001032 ! sensory system
relationship: spatially_disjoint_from UBERON:0002105 ! vestibulo-auditory system
[Term]
id: UBERON:0002105
name: vestibulo-auditory system
alt_id: UBERON:FMA_7192-MA_0002443
def: "A sensory system for the sense of hearing[WP]." [Wikipedia:Auditory_system]
comment: Auditory system is general anatomical term in FMA
subset: functional_classification
subset: uberon_slim
synonym: "auditory organ system" EXACT []
synonym: "auditory system" RELATED []
synonym: "auditory/vestibular system" RELATED []
synonym: "vestibuloauditory system" EXACT []
synonym: "vestibuloauditory system" RELATED []
xref: AAO:0000631
xref: FMA:7192
xref: FMA:78500
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/HumanEar.jpg/200px-HumanEar.jpg
xref: MA:0002443
xref: ncithesaurus:Auditory_System
xref: NIF_GrossAnatomy:nlx_anat_090817
xref: OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA
xref: TAO:0001138
xref: XAO:0003195
xref: ZFA:0001138
is_a: UBERON:0001032 ! sensory system
[Term]
id: UBERON:0002106
name: spleen
alt_id: UBERON:FMA_7196-MA_0000141-MIAA_0000085-XAO_0000328-ZFA_0000436
def: "Organ found in virtually all vertebrate animals with important roles in regard to red blood cells and the immune system.[1] In humans, it is located in the left upper quadrant of the abdomen. It removes old red blood cells and holds a reserve in case of hemorrhagic shock, especially in animals like horses (not in humans), while recycling iron.[2] It synthesizes antibodies in its white pulp and removes, from blood and lymph node circulation, antibody-coated bacteria along with antibody-coated blood cells." [Wikipedia:Spleen]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001281
xref: EFO:0000869
xref: FMA:7196
xref: GAID:1289
xref: galen:Spleen
xref: HOG:0000120
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d6/Illu_spleen.jpg/200px-Illu_spleen.jpg
xref: MA:0000141
xref: MAT:0000085
xref: MIAA:0000085
xref: ncithesaurus:Spleen
xref: OpenCyc:Mx4rvVjgw5wpEbGdrcN5Y29ycA
xref: TAO:0000436
xref: XAO:0000328
xref: ZFA:0000436
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0004177 ! implied link automatically realized ! hemopoietic organ
is_a: UBERON:0005057 ! implied link automatically realized ! immune organ
is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ
relationship: develops_from UBERON:0001048 ! primordium
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0001007 ! digestive system
relationship: part_of UBERON:0002323 ! body cavity
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0002405 ! immune system
[Term]
id: UBERON:0002107
name: liver
alt_id: UBERON:FMA_7197-MA_0000358-MIAA_0000097-XAO_0000133-ZFA_0000123
def: "An exocrine gland which secretes bile and functions in metabolism of protein and carbohydrate and fat, synthesizes substances involved in the clotting of the blood, synthesizes vitamin A, detoxifies poisonous substances, stores glycogen, and breaks down worn-out erythrocytes[GO]." [BTO:0000759, Wikipedia:Liver]
comment: Only ZFA considers this part_of immune system
subset: uberon_slim
xref: BTO:0000759
xref: EFO:0000887
xref: EHDAA:2197
xref: EHDAA2:0000997
xref: FMA:7197
xref: GAID:288
xref: galen:Liver
xref: HOG:0000257
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Leber_Schaf.jpg/200px-Leber_Schaf.jpg
xref: MA:0000358
xref: MAT:0000097
xref: MIAA:0000097
xref: ncithesaurus:Liver
xref: OpenCyc:Mx4rvVimppwpEbGdrcN5Y29ycA
xref: TAO:0000123
xref: XAO:0000133
xref: ZFA:0000123
is_a: UBERON:0002365 ! exocrine gland
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0005057 ! implied link automatically realized ! immune organ
is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ
relationship: develops_from UBERON:0000925 ! endoderm
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0002405 ! immune system
relationship: part_of UBERON:0002423 ! hepatobiliary system
[Term]
id: UBERON:0002108
name: small intestine
alt_id: UBERON:FMA_7200-MA_0000337-MIAA_0000047-XAO_0000130-ZFA_0001323
def: "Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine. Examples: There is only one small intestine. // The passage from the posterior intestine, from the rectal valve to the opening to the exterior. // The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005." [WA:dh, Wikipedia:Small_intestine, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior intestine" RELATED []
synonym: "mid intestine" RELATED []
synonym: "small bowel" EXACT []
synonym: "small intestine" EXACT []
xref: BTO:0000651
xref: EFO:0000841
xref: FMA:7200
xref: GAID:313
xref: galen:SmallIntestine
xref: HOG:0000055
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Stomach_colon_rectum_diagram.svg/200px-Stomach_colon_rectum_diagram.svg.png
xref: MA:0000337
xref: MAT:0000047
xref: MIAA:0000047
xref: ncithesaurus:Small_Intestine
xref: OpenCyc:Mx4rvVjlIJwpEbGdrcN5Y29ycA
xref: TAO:0001323
xref: XAO:0000130
xref: ZFA:0001323
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0000160 ! intestine
[Term]
id: UBERON:0002109
name: pair of nares
alt_id: UBERON:FMA_72005-ZFA_0000550
def: "Pair of nostrils." [Wikipedia:Nares]
comment: Note this is a "set of anatomical planes" in FMA
subset: uberon_slim
synonym: "nares" RELATED []
synonym: "nares set" EXACT []
synonym: "nostrils" EXACT []
synonym: "pair of nostrils" EXACT []
xref: FMA:72005
xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0003102 ! surface structure
relationship: part_of UBERON:0000004 ! olfactory apparatus
[Term]
id: UBERON:0002110
name: gallbladder
alt_id: UBERON:FMA_7202-MA_0000356-MIAA_0000072-XAO_0000135-ZFA_0000208
def: "Organ with organ cavity which is continuous proximally with the cystic duct and distally terminates in the fundus of the gallbladder. Examples: There is only one gallbladder." [Wikipedia:Gallbladder]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gall bladder" EXACT []
xref: BTO:0000493
xref: EFO:0000853
xref: EHDAA:8062
xref: EHDAA2:0000699
xref: FMA:7202
xref: galen:Gallbladder
xref: HOG:0000221
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Abdomal_organs.svg/200px-Abdomal_organs.svg.png
xref: MA:0000356
xref: MAT:0000072
xref: MIAA:0000072
xref: ncithesaurus:Gallbladder
xref: OpenCyc:Mx4rvVkGr5wpEbGdrcN5Y29ycA
xref: TAO:0000208
xref: XAO:0000135
xref: ZFA:0000208
is_a: UBERON:0002075 ! viscus
is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ
relationship: develops_from UBERON:0004912 ! biliary bud
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0002294 ! biliary system
relationship: part_of UBERON:0002323 ! body cavity
[Term]
id: UBERON:0002111
name: smooth muscle of artery
alt_id: UBERON:FMA_72024-MA_0000708
def: "A portion of smooth muscle tissue that is part of an artery [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "artery smooth muscle" EXACT []
xref: BTO:0000087
xref: FMA:72024
xref: MA:0000708
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0004237 ! implied link automatically realized ! blood vessel smooth muscle
is_a: UBERON:0004695 ! implied link automatically realized ! arterial system smooth muscle
relationship: part_of UBERON:0001637
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001637 ! artery
relationship: part_of UBERON:0001637 ! artery
[Term]
id: UBERON:0002112
name: smooth muscle of esophagus
alt_id: UBERON:FMA_72025-MA_0001573
def: "A portion of smooth muscle tissue that is part of a esophagus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "esophagus involuntary muscle" EXACT [OBOL:automatic]
synonym: "esophagus non-striated muscle" EXACT [OBOL:automatic]
synonym: "esophagus smooth muscle" EXACT []
synonym: "esophagus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "gullet involuntary muscle" EXACT [OBOL:automatic]
synonym: "gullet non-striated muscle" EXACT [OBOL:automatic]
synonym: "gullet smooth muscle" EXACT [OBOL:automatic]
synonym: "gullet smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of esophagus" EXACT [OBOL:automatic]
synonym: "involuntary muscle of gullet" EXACT [OBOL:automatic]
synonym: "involuntary muscle of oesophagus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of esophagus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of gullet" EXACT [OBOL:automatic]
synonym: "non-striated muscle of oesophagus" EXACT [OBOL:automatic]
synonym: "oesophagus involuntary muscle" EXACT [OBOL:automatic]
synonym: "oesophagus non-striated muscle" EXACT [OBOL:automatic]
synonym: "oesophagus smooth muscle" RELATED []
synonym: "oesophagus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of gullet" EXACT [OBOL:automatic]
synonym: "smooth muscle of oesophagus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of esophagus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of gullet" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of oesophagus" EXACT [OBOL:automatic]
xref: FMA:72025
xref: MA:0001573
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0004226 ! implied link automatically realized ! gastrointestinal system smooth muscle
relationship: part_of UBERON:0001043
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0002113
name: kidney
alt_id: UBERON:FMA_7204-MA_0001683
alt_id: UBERON:FMA_7205-MA_0001655
def: "A paired organ which has the production of urine as its primary function." [Wikipedia:Kidney]
subset: uberon_slim
synonym: "kidney" EXACT []
xref: AAO:0000250
xref: BTO:0000671
xref: EFO:0000929
xref: FMA:7203
xref: GAID:423
xref: galen:Kidney
xref: MA:0000368
xref: MAT:0000119
xref: MIAA:0000118
xref: MIAA:0000119
xref: ncithesaurus:Kidney
xref: OpenCyc:Mx4rvVjlYpwpEbGdrcN5Y29ycA
xref: TAO:0000529
xref: XAO:0003267
is_a: UBERON:0000489 ! cavitated compound organ
is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0001008 ! urinary system
relationship: spatially_disjoint_from UBERON:0000160 ! intestine
[Term]
id: UBERON:0002114
name: duodenum
alt_id: UBERON:FMA_7206-MA_0000338-MIAA_0000044-XAO_0000236
def: "The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000365
xref: EFO:0000851
xref: EHDAA:3830
xref: EHDAA:3937
xref: FMA:7206
xref: GAID:284
xref: galen:Duodenum
xref: HOG:0000052
xref: MA:0000338
xref: MAT:0000044
xref: MIAA:0000044
xref: ncithesaurus:Duodenum
xref: OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA
xref: XAO:0000236
xref: ZFA:0000348
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0002115
name: jejunum
alt_id: UBERON:FMA_7207-MA_0000340-MIAA_0000045
def: "The jejunum is the middle section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms middle intestine or mid-gut may be used instead of jejunum. [WP,unvetted]." [Wikipedia:Jejunum]
comment: TODO consider ZFA:0001323 mid intestine, see also small intestine
subset: uberon_slim
xref: BTO:0000657
xref: EFO:0001333
xref: FMA:7207
xref: GAID:318
xref: galen:Jejunum
xref: HOG:0000053
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Illu_small_intestine.jpg/200px-Illu_small_intestine.jpg
xref: MA:0000340
xref: MAT:0000045
xref: MIAA:0000045
xref: ncithesaurus:Jejunum
xref: OpenCyc:Mx4rwATkPJwpEbGdrcN5Y29ycA
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0002116
name: ileum
alt_id: UBERON:FMA_7208-MA_0000339-MIAA_0000282-XAO_0000237
def: "The ileum is the final section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms posterior intestine or distal intestine may be used instead of ileum. [WP,unvetted]." [Wikipedia:Ileum]
comment: TODO consider ZFA:0000706 posterior intestine, see also colon
subset: uberon_slim
xref: BTO:0000620
xref: EFO:0001334
xref: FMA:7208
xref: GAID:315
xref: galen:Ileum
xref: HOG:0000647
xref: MA:0000339
xref: MAT:0000282
xref: MIAA:0000282
xref: ncithesaurus:Ileum
xref: OpenCyc:Mx4rvdcLHZwpEbGdrcN5Y29ycA
xref: XAO:0000237
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0002118
name: right ovary
alt_id: UBERON:FMA_7213-MA_0001705
def: "An ovary that is part of a right side of organism [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
xref: FMA:7213
xref: MA:0001705
xref: ncithesaurus:Right_Ovary
is_a: UBERON:0000992 ! implied link automatically realized ! ovary
relationship: part_of UBERON:0004532
intersection_of: UBERON:0000992 ! ovary
intersection_of: part_of UBERON:0004532 ! right side of organism
[Term]
id: UBERON:0002119
name: left ovary
alt_id: UBERON:FMA_7214-MA_0001704
def: "An ovary that is part of a left side of organism [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
xref: FMA:7214
xref: MA:0001704
xref: ncithesaurus:Left_Ovary
is_a: UBERON:0000992 ! implied link automatically realized ! ovary
relationship: part_of UBERON:0004531
intersection_of: UBERON:0000992 ! ovary
intersection_of: part_of UBERON:0004531 ! left side of organism
[Term]
id: UBERON:0002120
name: pronephros
alt_id: UBERON:FMA_72170-MIAA_0000117-XAO_0002000-ZFA_0000151
def: "In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensible for larval life[GO]. // The first kidney in all vertebrates - it is transitional and disappears soon after it has formed. // Organ that serves as a transient kidney, providing osmoregulation during early developmental stages and then degenerating during metamorphosis. // The embryonic kidney, present at the level of the third somite, is composed of two glomeruli fused at the midline, two pronephric tubules, and paired bilateral pronephric ducts that modify the composition of the blood filtrate before delivering it to the cloaca for excretion.Kimmel et al, 1995." [GO:0048793, Wikipedia:Pronephros, XB:curator, ZFIN:curator]
comment: TODO - check developmental relationships.
subset: uberon_slim
xref: BTO:0001541
xref: EFO:0000927
xref: EHDAA:1017
xref: EHDAA2:0001570
xref: FMA:72170
xref: HOG:0000037
xref: MAT:0000117
xref: MIAA:0000117
xref: ncithesaurus:Pronephros
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002113 ! kidney
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0005721 ! pronephric mesoderm
relationship: develops_from UBERON:0005754 ! rostral part of nephrogenic cord
relationship: part_of UBERON:0002323 ! body cavity
[Term]
id: UBERON:0002122
name: capsule of thymus
alt_id: UBERON:FMA_72204-MA_0000766
def: "the fibrous connective tissue surrounding the thymus." [MP:0002368]
comment: This class was created automatically from a combination of ontologies
synonym: "thymus capsule" EXACT []
xref: FMA:72204
xref: MA:0000766
is_a: UBERON:0003893 ! capsule
relationship: surrounds UBERON:0002370
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0002370 ! thymus
relationship: surrounds UBERON:0002370 ! thymus
[Term]
id: UBERON:0002123
name: cortex of thymus
alt_id: UBERON:FMA_72205-MA_0000767
def: "Cortical portion of thymus, mainly composed of lymphoid cells, supported by a network of finely-branched epithelial reticular cells, which is continuous with a similar network in the medullary portion. This network forms an adventitia to the blood vessels. The cortex is the location of the earliest events in thymocyte development, where T cell receptor gene rearrangement and positive selection takes place." [Wikipedia:Thymus#Cortex]
comment: This class was created automatically from a combination of ontologies
synonym: "cortex of thymus gland" EXACT [OBOL:automatic]
synonym: "thymus cortex" EXACT []
synonym: "thymus gland cortex" EXACT [OBOL:automatic]
xref: FMA:72205
xref: MA:0000767
xref: ncithesaurus:Thymus_Cortex
is_a: UBERON:0001851 ! cortex
relationship: part_of UBERON:0002370
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0002370 ! thymus
relationship: part_of UBERON:0002370 ! thymus
[Term]
id: UBERON:0002124
name: medulla of thymus
alt_id: UBERON:FMA_72206-MA_0000771
def: "Medullary portion of thymus. The reticulum is coarser than in the cortex, the lymphoid cells are relatively fewer in number, and there are found peculiar nest-like bodies, the concentric corpuscles of Hassall. These concentric corpuscles are composed of a central mass, consisting of one or more granular cells, and of a capsule formed of epithelioid cells. They are the remains of the epithelial tubes, which grow out from the third branchial pouches of the embryo to form the thymus. Each follicle is surrounded by a vascular plexus, from which vessels pass into the interior, and radiate from the periphery toward the center, forming a second zone just within the margin of the medullary portion. In the center of the medullary portion there are very few vessels, and they are of minute size." [Wikipedia:Thymus#Medulla]
comment: This class was created automatically from a combination of ontologies
synonym: "medulla of thymus gland" EXACT [OBOL:automatic]
synonym: "thymus gland medulla" EXACT [OBOL:automatic]
synonym: "thymus medulla" EXACT []
xref: EFO:0001969
xref: FMA:72206
xref: MA:0000771
xref: ncithesaurus:Thymus_Medulla
is_a: UBERON:0000958 ! medulla
relationship: part_of UBERON:0002370
intersection_of: UBERON:0000958 ! medulla
intersection_of: part_of UBERON:0002370 ! thymus
relationship: part_of UBERON:0002370 ! thymus
[Term]
id: UBERON:0002125
name: lobule of thymus
alt_id: UBERON:FMA_72215-MA_0000770
def: "the basic structural unit of the thymus." [MP:0002367]
comment: This class was created automatically from a combination of ontologies
synonym: "thymus lobule" EXACT []
xref: FMA:72215
xref: MA:0000770
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002370 ! thymus
[Term]
id: UBERON:0002126
name: solitary tract nuclear complex
alt_id: UBERON:FMA_72242-MA_0001052
def: "The solitary tract and nucleus are structures in the brainstem that carry and receive visceral sensation and taste from the facial (VII), glossopharyngeal (IX) and vagus (X) cranial nerves. [WP,unvetted]." [Wikipedia:Nucleus_of_tractus_solitarius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nuclei of solitary tract" EXACT []
synonym: "nucleus of tractus solitarius" EXACT []
synonym: "solitary nuclei" EXACT []
synonym: "solitary nucleus" EXACT []
synonym: "solitary tract nucleus" EXACT []
xref: FMA:72242
xref: GAID:593
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png
xref: MA:0001052
xref: ncithesaurus:Solitary_Nucleus
xref: NIF_GrossAnatomy:birnlex_1429
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002127
name: inferior olivary complex
alt_id: UBERON:FMA_72243-MA_0001040-ZFA_0000215
def: "largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements." [Wikipedia:Inferior_olivary_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "inferior olivary nuclear complex" EXACT []
synonym: "inferior olivary nucleus" EXACT []
synonym: "inferior olive" EXACT []
xref: BTO:0002298
xref: FMA:72243
xref: HOG:0001380
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/CerebCircuit.png/200px-CerebCircuit.png
xref: MA:0001040
xref: NIF_GrossAnatomy:birnlex_1164
xref: TAO:0000215
xref: ZFA:0000215
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002574 ! implied link automatically realized ! regional part of inferior olivary complex
relationship: part_of UBERON:0000128 ! olivary body
[Term]
id: UBERON:0002128
name: superior olivary complex
alt_id: UBERON:FMA_72247-MA_0001026
def: "The superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound[GO]." [Wikipedia:Superior_olivary_complex]
comment: GO -- In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound. -- TODO fix GO def to be the same throughout
subset: uberon_slim
synonym: "superior olivary nuclei" EXACT []
synonym: "superior olivary nucleus" EXACT []
synonym: "superior olive" RELATED []
xref: FMA:72247
xref: HOG:0001381
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray713.png/200px-Gray713.png
xref: MA:0001026
xref: NIF_GrossAnatomy:birnlex_1307
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002129
name: cerebellar cortex
alt_id: UBERON:FMA_72248-MA_0000199
def: "The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function[GO]." [Wikipedia:Cerebellar_cortex]
comment: The circuits in the cerebellar cortex look similar across all classes of vertebrates, including fish, reptiles, birds, and mammals (e.g., Fig. 2). This has been taken as evidence that the cerebellum performs functions important to all vertebrate species. (Wikipedia)
subset: uberon_slim
xref: BTO:0000043
xref: FMA:72248
xref: GAID:596
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Cerebellum_NIH.png/200px-Cerebellum_NIH.png
xref: MA:0000199
xref: ncithesaurus:Cerebellar_Cortex
xref: NIF_GrossAnatomy:birnlex_1566
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002130
name: cerebellar nuclear complex
alt_id: UBERON:FMA_72249-MA_0000203
def: "." [Wikipedia:Cerebellar_nuclei]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "central nuclei" EXACT []
synonym: "cerebellar nuclei" EXACT []
synonym: "deep cerebellar nuclei" EXACT []
synonym: "deep cerebellar nucleus" EXACT []
synonym: "intracerebellar nuclei" EXACT []
synonym: "intrinsic nuclei of cerebellum" EXACT []
synonym: "roof nuclei-2" EXACT []
xref: FMA:72249
xref: GAID:599
xref: MA:0000203
xref: NIF_GrossAnatomy:birnlex_1568
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002131
name: anterior lobe of cerebellum
alt_id: UBERON:FMA_72251-MA_0000991
def: "The anterior lobe of cerebellum is the portion of the cerebellum responsible for mediating unconscious proprioception. In alcoholics, it can deteriorate. It is sometimes equated to the 'paleocerebellum'. [WP,unvetted]." [Wikipedia:Anterior_lobe_of_cerebellum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior cerebellar lobe" EXACT []
synonym: "anterior lobe of cerebellum" EXACT []
synonym: "cerebellum anterior lobe" EXACT []
xref: FMA:72251
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/13/CerebellumRegions.jpg/200px-CerebellumRegions.jpg
xref: MA:0000991
xref: NIF_GrossAnatomy:birnlex_1118
is_a: UBERON:0005293 ! cerebellum lobe
[Term]
id: UBERON:0002132
name: dentate nucleus
alt_id: UBERON:FMA_72260-MA_0001008
def: "The Dentate nucleus is located within the deep white matter of each cerebellar hemisphere. It is the largest of the four deep cerebellar nuclei, the others being the fastigial nucleus and the interposed nucleus (globose and emboliform nuclei combined). It is responsible for the planning, initiation and control of volitional movements. It therefore receives its afferents from the premotor cortex and the supplementary motor cortex. Its efferents project via the superior cerebellar peduncle through the red nucleus to the ventrolateral thalamus (crossing over at the pontomesencephalic junction). It consists of an irregularly folded, of a grayish-yellow color, containing white fibers, and presenting on its antero-medial aspect an opening, the hilus, from which most of the fibers of the superior peduncle emerge. [WP,unvetted]." [Wikipedia:Dentate_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateral cerebellar nucleus" EXACT []
synonym: "lateral nucleus of cerebellum" EXACT []
xref: FMA:72260
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray707.png/200px-Gray707.png
xref: MA:0001008
xref: NIF_GrossAnatomy:birnlex_1171
is_a: UBERON:0002130 ! cerebellar nuclear complex
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0002130 ! cerebellar nuclear complex
[Term]
id: UBERON:0002133
name: atrioventricular valve
alt_id: UBERON:FMA_7233-ZFA_0005064
def: "Cardiac valve which has as its parts the leaf of cardiac valve that separates the atrium from the ventricle. // The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. Hu et al. 2001." [Wikipedia:Heart_valve#Atrioventricular_valves, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "AV valve" EXACT []
xref: EHDAA:7421
xref: EHDAA2:0000153
xref: FMA:7233
xref: galen:AtrioventricularValve
xref: HOG:0001472
xref: MA:0002789
xref: OpenCyc:Mx4rfCfdorrpEduAAAACs6hRXg
xref: TAO:0005064
xref: ZFA:0005064
is_a: UBERON:0000946 ! cardial valve
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: connects UBERON:0002081 ! cardiac atrium
relationship: connects UBERON:0002082 ! cardiac ventricle
relationship: develops_from UBERON:0002062 ! endocardial cushion
[Term]
id: UBERON:0002134
name: tricuspid valve
alt_id: UBERON:FMA_7234-MA_0000090
def: "Atrioventricular valve which has as its parts the anterior, posterior and septal leaflets, attached to the fibrous ring of tricuspid valve." [Wikipedia:Tricuspid_valve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "right atrioventricular valve" EXACT []
xref: EHDAA:7427
xref: EHDAA2:0002081
xref: FMA:7234
xref: GAID:567
xref: galen:TricuspidValve
xref: HOG:0000816
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000090
xref: ncithesaurus:Tricuspid_Valve
xref: OpenCyc:Mx4rvuWAAJwpEbGdrcN5Y29ycA
is_a: UBERON:0002133 ! atrioventricular valve
is_a: UBERON:0005208 ! implied link automatically realized ! right atrium valve
relationship: part_of UBERON:0005965 ! outflow part of right atrium
[Term]
id: UBERON:0002135
name: mitral valve
alt_id: UBERON:FMA_7235-MA_0000088
def: "Atrioventricular valve which has as its parts the anterior and posterior leaflets, attached to the fibrous ring of mitral valve." [Wikipedia:Mitral_valve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bicuspid valve" RELATED []
synonym: "left atrioventricular valve" EXACT []
xref: EHDAA2:0000168
xref: FMA:7235
xref: GAID:565
xref: galen:MitralValve
xref: HOG:0000817
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000088
xref: ncithesaurus:Mitral_Valve
xref: OpenCyc:Mx4rv4l2nJwpEbGdrcN5Y29ycA
is_a: UBERON:0002133 ! atrioventricular valve
[Term]
id: UBERON:0002136
name: hilus of dentate gyrus
alt_id: UBERON:FMA_72358-MA_0000947
comment: Merge with CA4?
synonym: "CA4" RELATED []
synonym: "dentate gyrus hilus" EXACT []
synonym: "field CA4 of hippocampal formation" EXACT []
xref: FMA:72358
xref: MA:0000947
xref: NIF_GrossAnatomy:birnlex_1482
is_a: UBERON:0002744 ! hilum of dentate nucleus
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
is_a: UBERON:0003876 ! implied link automatically realized ! hippocampal region
relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation
[Term]
id: UBERON:0002137
name: aortic valve
alt_id: UBERON:FMA_7236-MA_0000087
def: "Cardiac valve which has as its parts the anterior, right posterior and left posterior cusps, attached to the fibrous ring of aortic valve." [Wikipedia:Aortic_valve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:4410
xref: EHDAA2:0000134
xref: FMA:7236
xref: GAID:563
xref: galen:AorticValve
xref: HOG:0000815
xref: MA:0000087
xref: ncithesaurus:Aortic_Valve
xref: OpenCyc:Mx4rv5914JwpEbGdrcN5Y29ycA
is_a: UBERON:0000946 ! cardial valve
relationship: part_of UBERON:0005956 ! outflow part of left ventricle
[Term]
id: UBERON:0002138
name: habenulo-interpeduncular tract
alt_id: UBERON:FMA_72400-ZFA_0000353
comment: This class was created automatically from a combination of ontologies
synonym: "fasciculus retroflexus" EXACT []
synonym: "habenulointerpeduncular fasciculus" EXACT []
synonym: "habenulointerpeduncular tract" RELATED []
synonym: "habenulopeduncular tract" EXACT []
synonym: "Meynert's retroflex bundle" EXACT []
xref: FMA:72400
xref: NIF_GrossAnatomy:birnlex_1504
xref: TAO:0000353
xref: ZFA:0000353
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0002139
name: subcommissural organ
alt_id: UBERON:FMA_72414-ZFA_0000683
def: "The subcommissural organ is a circumventricular organ consisting of ependymal cells which secrete somatostatin. It is named for its location relative to the posterior commissure. [WP,unvetted]." [Wikipedia:Subcommissural_organ]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "SCO" RELATED []
xref: BTO:0001820
xref: FMA:72414
xref: GAID:794
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray715.png/200px-Gray715.png
xref: MA:0002941
xref: NIF_GrossAnatomy:birnlex_1028
xref: TAO:0000683
xref: ZFA:0000683
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0000481 ! multi-tissue structure
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002140
name: parabigeminal nucleus
alt_id: UBERON:FMA_72415-MA_0001074
comment: This class was created automatically from a combination of ontologies
xref: FMA:72415
xref: MA:0001074
xref: NIF_GrossAnatomy:birnlex_1007
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002141
name: parvocellular oculomotor nucleus
alt_id: UBERON:FMA_72424-MA_0001071
def: "The Edinger-Westphal nucleus (also known as the accessory oculomotor nucleus) is the accessory parasympathetic cranial nerve nucleus of the oculomotor nerve, supplying the constricting muscles of the iris. Alternatively, the Edinger-Westphal nucleus is a term often used to refer to the adjacent population of non-preganglionic neurons that do not project to the ciliary ganglion, but rather project to the spinal cord, dorsal raphe nucleus, and septal nuclei. Unlike the classical, preganglionic Edinger-Westphal neurons that contain choline acetyltransferase, neurons of the non-preganglionic Edinger-Westphal nucleus have been shown to contain various stress- and feeding-related neuropeptides, such as Urocortin and cocaine- and amphetamine-regulated transcript. Proper nomenclature for this distinct brain region has not yet been established. [WP,unvetted]." [Wikipedia:Edinger-westphal_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "accessory oculomotor nucleus" EXACT []
synonym: "edinger-westphal nucleus" EXACT []
synonym: "oculomotor nucleus, parvocellular part" EXACT []
xref: FMA:72424
xref: MA:0001071
xref: NIF_GrossAnatomy:birnlex_822
xref: ZFA:0000244
is_a: UBERON:0000126 ! cranial nerve nucleus
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002142
name: pedunculopontine tegmental nucleus
alt_id: UBERON:FMA_72429-MA_0001020
def: "The pedunculopontine nucleus (PPN) (or pedunculopontine tegmental nucleus, PPTN) is located in the brainstem, caudal to the substantia nigra and adjacent to the superior cerebellar peduncle. It is composed by a wide variety of neurochemical cell types, including cholinergic, glutamatergic and GABAergic cells. In the classical sense, the PPN is considered to be one of the main components of the reticular activating system. [WP,unvetted]." [Wikipedia:Pedunculopontine_tegmental_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "peduncular pontine nucleus" EXACT []
synonym: "pedunculopontine nucleus" EXACT []
xref: FMA:72429
xref: MA:0001020
xref: NIF_GrossAnatomy:birnlex_1437
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0000988 ! pons
relationship: part_of UBERON:0002275 ! reticular formation
[Term]
id: UBERON:0002143
name: dorsal tegmental nucleus
alt_id: UBERON:FMA_72434-ZFA_0000346
comment: This class was created automatically from a combination of ontologies
synonym: "dorsal tegmental nucleus (gudden)" EXACT []
synonym: "gudden nucleus" EXACT []
synonym: "posterior tegmental nucleus" EXACT []
synonym: "von Gudden's nucleus" EXACT []
xref: FMA:72434
xref: HOG:0001368
xref: MA:0001013
xref: NIF_GrossAnatomy:birnlex_992
xref: TAO:0000346
xref: ZFA:0000346
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002144
name: peripeduncular nucleus
alt_id: UBERON:FMA_72437-MA_0000875
comment: This class was created automatically from a combination of ontologies
synonym: "peripeduncular nucleus of pons" EXACT []
xref: FMA:72437
xref: MA:0000875
xref: NIF_GrossAnatomy:birnlex_1474
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
relationship: part_of UBERON:0001900 ! subthalamus
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002145
name: interpeduncular nucleus
alt_id: UBERON:FMA_72439-MA_0001069
comment: This class was created automatically from a combination of ontologies
synonym: "interpeduncular ganglion" EXACT []
xref: FMA:72439
xref: MA:0001069
xref: NIF_GrossAnatomy:birnlex_1000
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002146
name: pulmonary valve
alt_id: UBERON:FMA_7246-MA_0000089
def: "Cardiac valve which has as its parts the right anterior, left anterior and posterior cusps, attached to the fibrous ring of pulmonary valve." [Wikipedia:Pulmonary_valve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pulmonic valve" EXACT []
xref: EHDAA:4412
xref: EHDAA2:0001577
xref: FMA:7246
xref: GAID:566
xref: galen:PulmonaryValve
xref: HOG:0000814
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Diagram_of_the_human_heart_%28cropped%29.svg/200px-Diagram_of_the_human_heart_%28cropped%29.svg.png
xref: MA:0000089
xref: ncithesaurus:Pulmonary_Valve
xref: OpenCyc:Mx4rwP6uq5wpEbGdrcN5Y29ycA
is_a: UBERON:0000946 ! cardial valve
[Term]
id: UBERON:0002147
name: reticulotegmental nucleus
alt_id: UBERON:FMA_72471-MA_0001025
comment: This class was created automatically from a combination of ontologies
synonym: "reticular tegmental nucleus" EXACT []
synonym: "reticulotegmental nucleus of pons" EXACT []
synonym: "tegmental reticular nucleus, pontine gray" EXACT []
xref: FMA:72471
xref: MA:0001025
xref: NIF_GrossAnatomy:birnlex_882
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0000988 ! pons
relationship: part_of UBERON:0002275 ! reticular formation
[Term]
id: UBERON:0002148
name: locus ceruleus
alt_id: UBERON:FMA_72478-MA_0001017-ZFA_0000539
def: "The locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic[GO]. Bluish region in the superior angle of the fourth ventricle floor, corresponding to melanin-like pigmented nerve cells which lie lateral to the ponto-mesencephalic central gray (griseum centrale). It is also known as nucleus pigmentosus pontis[GAID]." [GAID:577, GO:0021703, Wikipedia:Locus_ceruleus]
comment: TODO - check ZFA/pons. also GO says part of dorsorostral pons
subset: uberon_slim
synonym: "caerulean nucleus" EXACT []
synonym: "locus coeruleu" EXACT []
synonym: "locus coeruleus" EXACT []
synonym: "nucleus of locus caeruleus" EXACT []
xref: BTO:0001408
xref: EFO:0001963
xref: FMA:72478
xref: GAID:577
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray709.png/200px-Gray709.png
xref: MA:0001017
xref: NIF_GrossAnatomy:birnlex_905
xref: TAO:0000539
xref: ZFA:0000539
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002149
name: superior salivatory nucleus
alt_id: UBERON:FMA_72482-MA_0001027
def: "visceromotor cranial nerve nucleus located in the pontine tegmentum." [Wikipedia:Superior_salivatory_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "superior salivary nucleus" EXACT [GO:0021753]
xref: FMA:72482
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray788.png/200px-Gray788.png
xref: MA:0001027
xref: NIF_GrossAnatomy:birnlex_1131
is_a: UBERON:0000126 ! cranial nerve nucleus
is_a: UBERON:0004133 ! salivatory nucleus
relationship: part_of UBERON:0003023 ! pontine tegmentum
[Term]
id: UBERON:0002150
name: superior cerebellar peduncle
alt_id: UBERON:FMA_72495-MA_0002746
def: "The superior cerebellar peduncles (brachium conjunctivum), two in number, emerge from the upper and medial part of the white substance of the hemispheres and are placed under cover of the upper part of the cerebellum. They are joined to each other across the middle line by the anterior medullary velum, and can be followed upward as far as the inferior colliculi, under which they disappear. Below, they form the upper lateral boundaries of the fourth ventricle, but as they ascend they converge on the dorsal aspect of the ventricle and thus assist in roofing it in. All fibers (except vestibular fibers to the vestibular nuclei through the inferior cerebellar peduncle) carrying information from the cerebellum to the midbrain and pons pass through the superior cerebellar peduncle. [WP,unvetted]." [Wikipedia:Superior_cerebellar_peduncle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:72495
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray704.png/200px-Gray704.png
xref: MA:0002746
xref: NIF_GrossAnatomy:birnlex_1711
is_a: UBERON:0002474 ! cerebellar peduncle
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0002151
name: pontine nuclear group
alt_id: UBERON:FMA_72512-MA_0001021
def: "The pontine nuclei are a part of the pons which store the memory of intention during motor activity. Corticopontine fibres carry information from the primary motor cortex to the ipsilateral pontine nucleus in the ventral pons, and the pontocerebellar projection then carries that information to the contralateral cerebellum via the middle cerebellar peduncle. They therefore allow modification of actions in the light of their outcome, or error correction, and are hence important in learning motor skills. [WP,unvetted]." [Wikipedia:Pontine_nuclei]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pontine nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1516]
synonym: "pontine nuclear group" EXACT [FMA:72512]
synonym: "pontine nuclei" EXACT []
synonym: "pontine nucleus" EXACT []
xref: BTO:0003396
xref: FMA:72512
xref: MA:0001021
xref: NIF_GrossAnatomy:birnlex_1516
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0000988 ! pons
relationship: part_of UBERON:0002567 ! basal part of pons
[Term]
id: UBERON:0002152
name: middle cerebellar peduncle
alt_id: UBERON:FMA_72515-MA_0002745
def: "The middle cerebellar peduncles (brachia pontis) are composed entirely of centripetal fibers, which arise from the cells of the nuclei pontis of the opposite side and end in the cerebellar cortex; the fibers are arranged in three fasciculi, superior, inferior, and deep. The superior fasciculus, the most superficial, is derived from the upper transverse fibers of the pons; it is directed backward and lateralward superficial to the other two fasciculi, and is distributed mainly to the lobules on the inferior surface of the cerebellar hemisphere and to the parts of the superior surface adjoining the posterior and lateral margins. The inferior fasciculus is formed by the lowest transverse fibers of the pons; it passes under cover of the superior fasciculus and is continued downward and backward more or less parallel with it, to be distributed to the folia on the under surface close to the vermis. The deep fasciculus comprises most of the deep transverse fibers of the pons. It is at first covered by the superior and inferior fasciculi, but crosses obliquely and appears on the medial side of the superior, from which it receives a bundle; its fibers spread out and pass to the upper anterior cerebellar folia. The fibers of this fasciculus cover those of the restiform body. [WP,unvetted]." [Wikipedia:Middle_cerebellar_peduncle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:72515
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2b/Gray705.png/200px-Gray705.png
xref: MA:0002745
xref: NIF_GrossAnatomy:birnlex_1529
xref: NIF_GrossAnatomy:birnlex_1699
is_a: UBERON:0002474 ! cerebellar peduncle
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0002153
name: fastigial nucleus
alt_id: UBERON:FMA_72537-MA_0001009
def: "The fastigial nucleus or nucleus fastigii refers specifically to the concentration of gray matter nearest to the middle line at the anterior end of the superior vermis, and immediately over the roof of the fourth ventricle, from which it is separated by a thin layer of white matter. It is smaller than the nucleus dentatus, but somewhat larger than the nucleus emboliformis and nucleus globosus, the other two independent centers of gray matter in the cerebellum. [WP,unvetted]." [Wikipedia:Fastigial_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "medial (fastigial) nucleus" EXACT []
synonym: "medial cerebellar nucleus" EXACT []
synonym: "roof nucleus-1" EXACT []
xref: FMA:72537
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray707.png/200px-Gray707.png
xref: MA:0001009
xref: NIF_GrossAnatomy:birnlex_1146
is_a: UBERON:0002130 ! cerebellar nuclear complex
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0002130 ! cerebellar nuclear complex
[Term]
id: UBERON:0002154
name: lateral reticular nucleus
alt_id: UBERON:FMA_72574-MA_0001047-ZFA_0000535
def: "The lateral reticular nucleus, of the funiculus, can be divided into three subnuclei, the parvocellular, magnocellular and the subtrigeminal. As is typical of the reticular formation, none of these are very distinct subnuclei, but rather blurred distinctions between cell types and location. The lateral reticular nucleus sends all of its projections to the cerebellum. The parvocellular portion of the LRN and the immediately adjacent magnocellular portion send most their projections to the vermis of the cerebellum. The rest of the magnocellular subnucleus sends its projections to the hemisphere regions of the cerebellum. The subtrigeminal nucleus sends its projections to the flocculonodular lobe. All of these efferent pathways are projected in an ipsilateral manner to the cerebellum, the most abundant of which are those to the vermis. This nucleus is also involved in the mediation of inspiration (in-breathing) with a part of the ventral r. nucleus. The afferent pathways to the LRN come from the spinal cord and higher brain structures. Most of the afferents come from the ipsilateral dorsal horn of the spinal cord and project exclusively to the parts of the LRN that do not receive input from the cortex. The spinal cord projections terminate mostly in the parvocellular region along with the adjacent magnocellular cells. This implies that most input from the spinal cord is relayed into the vermis. [WP,unvetted]." [Wikipedia:Lateral_reticular_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateral reticular nucleus (medulla)" EXACT []
xref: FMA:72574
xref: MA:0001047
xref: NIF_GrossAnatomy:nlx_anat_20081246
xref: TAO:0000535
xref: ZFA:0000535
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002155
name: gigantocellular nucleus
alt_id: UBERON:FMA_72576-MA_0001037
def: "The gigantocellular nucleus, as the name indicates, is mainly composed of the so called giant neuronal cells. This nucleus has been known to innervate the caudal hypoglossal nucleus, and responds to glutamateric stimuli. The gigantocellular nucleus excites the hypoglossal nucleus, and can play a role in the actions of the said nerve . This nucleus receives connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Retrograde studies have shown that the deep mesencephalic reticular formation and oral pontine reticular nucleus project to the nucleus gigantocellularis. The dorsal rostral section of the nucleus reticularis gigantocellularis is also involved mediating in expiration (or out-breathing) along with the parvocellular nucleus. [WP,unvetted]." [Wikipedia:Gigantocellular_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gigantocellular reticular nucleus" EXACT []
xref: FMA:72576
xref: MA:0001037
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002156
name: nucleus raphe magnus
alt_id: UBERON:FMA_72584-MA_0001024
def: "The nucleus raphe magnus, located directly rostral to the raphe obscurus, is afferently stimulated from axons in the spinal cord and cerebellum. This makes the magnus a likely candidate for part of the motor system; however, it seems to participate in the endogenous analgesia system. The magnus receives descending afferents from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, parvocellular reticular nucleus and the prelimbic, infralimbic, medial and lateral precentral cortices . All of these brain areas influence the main function of the raphe magnus. The main function of the magnus is mostly pain mediation; in fact it sends projections to the dorsal horn of the spinal cord to directly inhibit pain. The periaquiductal gray, the epicenter of analgesia, sends efferent connections to the nucleus raphe magnus in when it is stimulated by opiates (endogenous or otherwise). Electrical stimulation of the PAG produces analgesia, as well as administration of morphine to the PAG or n.r. magnus. The antinociceptic effects of electrical stimulation of the PAG can be blocked by administering naloxone, an opiate antagonist, to the n.r. magnus. All of this seems to indicate that the magnus is part of the endogenous opiate system, and acts to inhibit pain in the spinal cord. [WP,unvetted]." [Wikipedia:Nucleus_raphe_magnus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "magnus raphe nucleus" EXACT []
synonym: "raphe magnus nucleus" EXACT []
xref: FMA:72584
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png
xref: MA:0001024
xref: NIF_GrossAnatomy:birnlex_1363
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002157
name: nucleus raphe pallidus
alt_id: UBERON:FMA_72586-MA_0001051
def: "The nucleus raphe pallidus receives afferent connections from the periaqueductal gray, the paraventricular hypothalamic nucleus, central nucleus of the amygdala, lateral hypothalamic area, and parvocellular reticular nucleus. Also, the pallidus receives afferents from the medial preoptic area, median preoptic nucleus and lateral paragigantocellular reticular nuclei . The pallidus has recently been shown to be involved in the activation of a fever as an immunoreaction. It has been implied that the preoptic area is constantly inhibiting the raphe pallidus, especially the rostral portion, with GABA. When the preoptic area receives immune signals from the body, the inhibition stops and the rostral portion of the raphe pallidus excites the intermediolateral cell column, which induces a fever . The raphe pallidus has also been known to mediate the tachycardia response, an extremely high heart rate known to be incited by emotional or psychological stress. Microinjections of a GABA-a antagonist into the raphe pallidus, induces an increased heart rate. Conversely, microinjections of muscimol, a GABA-a agonist, inhibit tachycardia in rats under air-stress stimuli. In both of these cases, GABA is mediating two different sympathetic responses, so clearly the nucleus raphe pallidus is a far more a complex nucleus than previously thought. [WP,unvetted]." [Wikipedia:Nucleus_raphe_pallidus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pallidal raphe nucleus" EXACT []
synonym: "raphe pallidus nucleus" EXACT []
xref: FMA:72586
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png
xref: MA:0001051
xref: NIF_GrossAnatomy:birnlex_1375
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002158
name: principal inferior olivary nucleus
alt_id: UBERON:FMA_72592-MA_0001046
comment: This class was created automatically from a combination of ontologies
synonym: "chief inferior olivary nucleus" EXACT []
synonym: "inferior olivary complex, principal olive" EXACT []
synonym: "inferior olive principal nucleus" EXACT []
synonym: "inferior olive, principal nucleus" EXACT []
synonym: "main olivary nucleus" EXACT []
synonym: "principal nucleus of inferior olive" EXACT []
synonym: "principal olivary nucleus" EXACT []
xref: FMA:72592
xref: MA:0001046
xref: NIF_GrossAnatomy:nlx_anat_20081248
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002574 ! implied link automatically realized ! regional part of inferior olivary complex
relationship: part_of UBERON:0002127 ! inferior olivary complex
[Term]
id: UBERON:0002159
name: medial accessory inferior olivary nucleus
alt_id: UBERON:FMA_72594-MA_0001045
comment: This class was created automatically from a combination of ontologies
synonym: "inferior olivary complex, medial accessory olive" EXACT []
synonym: "inferior olive medial nucleus" EXACT []
synonym: "inferior olive, medial nucleus" EXACT []
synonym: "medial accessory olivary nucleus" EXACT []
xref: FMA:72594
xref: MA:0001045
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002574 ! implied link automatically realized ! regional part of inferior olivary complex
relationship: part_of UBERON:0002127 ! inferior olivary complex
[Term]
id: UBERON:0002160
name: nucleus prepositus
alt_id: UBERON:FMA_72596-MA_0001023
comment: This class was created automatically from a combination of ontologies
synonym: "nucleus prepositus hypoglossus" RELATED []
synonym: "prepositus hypoglossal nucleus" EXACT []
synonym: "prepositus nucleus" EXACT []
xref: FMA:72596
xref: MA:0001023
xref: NIF_GrossAnatomy:birnlex_2652
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002161
name: gracile nucleus
alt_id: UBERON:FMA_72602-MA_0001038
def: "Located in the medulla oblongata, the gracile nucleus is one of the dorsal column nuclei that participate in the sensation of fine touch and proprioception of the lower body (legs and trunk). It contains second-order neurons of the dorsal column-medial lemniscus system, which receive inputs from sensory neurons of the dorsal root ganglia and send axons that synapse in the thalamus. The neurons contained within the nucleus form a visible bump called the gracile tubercle on the posterior side of the closed medulla at the floor of the fourth ventricle. The gracile nucleus and fasciculus carry epicritic, kinesthetic, and conscious proprioceptive information from the lower part of the body (below the level of T6 in the spinal cord). The counterpart to the gracile nucleus and fasciculus is the cuneate nucleus and fasciculus, which carries the same type of information, but from the upper body (above T6, excepting the face and ear - the information from the face and ear is carried by the primary sensory trigeminal nucleus). [WP,unvetted]." [Wikipedia:Gracile_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Goll's nucleus" EXACT []
xref: FMA:72602
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray688.png/200px-Gray688.png
xref: MA:0001038
xref: NIF_GrossAnatomy:birnlex_2643
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002162
name: area postrema
alt_id: UBERON:FMA_72607-MA_0001034-ZFA_0005146
def: "An area of medulla oblongata, outside the blood-brain barrier. The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation. Ma 1997." [Wikipedia:Area_postrema, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003425
xref: FMA:72607
xref: GAID:591
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray709.png/200px-Gray709.png
xref: MA:0001034
xref: NIF_GrossAnatomy:birnlex_2636
xref: TAO:0005146
xref: ZFA:0005146
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002163
name: inferior cerebellar peduncle
alt_id: UBERON:FMA_72615-MA_0002744
def: "The upper part of the posterior district of the medulla oblongata is occupied by the inferior peduncle, a thick rope-like strand situated between the lower part of the fourth ventricle and the roots of the glossopharyngeal and vagus nerves. Each cerebellar inferior peduncle connects the medulla spinalis and medulla oblongata with the cerebellum, and comprises the juxtarestiform body and restiform body. Important fibers running through the inferior cerebellar peduncle include the spinocerebellar tract and axons from the inferior olivary nucleus, among others. [WP,unvetted]." [Wikipedia:Inferior_cerebellar_peduncle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "restiform body" EXACT []
xref: FMA:72615
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fc/Gray677.png/200px-Gray677.png
xref: MA:0002744
xref: NIF_GrossAnatomy:birnlex_1645
xref: NIF_GrossAnatomy:birnlex_1691
is_a: UBERON:0002474 ! cerebellar peduncle
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002164
name: tectobulbar tract
alt_id: UBERON:FMA_72645-ZFA_0000446
def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the optic tectum towards target cells in the premotor reticulospinal system in the hindbrain." [GO:0034429]
comment: This class was created automatically from a combination of ontologies
synonym: "tecto-bulbar tract" EXACT []
xref: FMA:72645
xref: NIF_GrossAnatomy:birnlex_750
xref: TAO:0000446
xref: ZFA:0000446
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002165
name: endocardium
alt_id: UBERON:FMA_7280-XAO_0000066-ZFA_0001320
def: "he endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]. Tunica intima which has as its parts the endothelium of endocardium and the fibroelastic connective tissue that surrounds the cavity of a cardiac chamber[FMA]. Layer that lines the lumen of the heart." [Wikipedia:Endocardium, ZFIN:curator]
comment: fixed in GO to reflect FMA. See email to David/Varsha June 18 2010
subset: uberon_slim
synonym: "heart endocardium" EXACT []
xref: BTO:0000387
xref: EFO:0000821
xref: FMA:7280
xref: GAID:550
xref: galen:Endocardium
xref: HOG:0000084
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray493.png/200px-Gray493.png
xref: MA:0000076
xref: MAT:0000455
xref: ncithesaurus:Endocardium
xref: OpenCyc:Mx4rsWA75K1cEduAAADggVaqvw
xref: TAO:0001320
xref: XAO:0000066
xref: ZFA:0001320
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0005983 ! heart layer
relationship: develops_from UBERON:0003084 ! heart primordium
relationship: has_part UBERON:0001986 ! endothelium
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002166
name: endocardium of atrium
alt_id: UBERON:FMA_7284-MA_0000077-ZFA_0001614
def: "Endocardium that is part of the atrium." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "atrial endocardium" EXACT []
synonym: "atrium endocardium" EXACT []
synonym: "atrium of heart endocardium" EXACT [OBOL:automatic]
synonym: "Cardiac atria endocardium" EXACT [OBOL:automatic]
synonym: "cardiac atrium endocardium" EXACT [OBOL:automatic]
synonym: "endocardium of atrium of heart" EXACT [OBOL:automatic]
synonym: "endocardium of Cardiac atria" EXACT [OBOL:automatic]
synonym: "endocardium of cardiac atrium" EXACT [OBOL:automatic]
synonym: "endocardium of heart atrium" EXACT [OBOL:automatic]
synonym: "heart atrium endocardium" EXACT [OBOL:automatic]
xref: FMA:7284
xref: HOG:0000606
xref: MA:0000077
xref: ZFA:0001614
is_a: UBERON:0002165 ! endocardium
relationship: part_of UBERON:0002081
intersection_of: UBERON:0002165 ! endocardium
intersection_of: part_of UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0002081 ! cardiac atrium
[Term]
id: UBERON:0002167
name: right lung
alt_id: UBERON:FMA_7309-MA_0000426
def: "Lung which consists of the right upper lobe, middle lobe and right lower lobe." [Wikipedia:Right_lung]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:4969
xref: EHDAA2:0001730
xref: FMA:7309
xref: HOG:0000301
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Gray972.png/200px-Gray972.png
xref: MA:0000426
xref: ncithesaurus:Right_Lung
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA
is_a: UBERON:0002048 ! implied link automatically realized ! lung
relationship: in_right_side_of UBERON:0000170
intersection_of: UBERON:0002048 ! lung
intersection_of: in_right_side_of UBERON:0000170 ! pair of lungs
[Term]
id: UBERON:0002168
name: left lung
alt_id: UBERON:FMA_7310-MA_0000425
def: "Lung which consists of the left upper lobe and left lower lobe." [Wikipedia:Left_lung]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:4947
xref: EHDAA2:0000943
xref: FMA:7310
xref: HOG:0000618
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dd/Gray973.png/200px-Gray973.png
xref: MA:0000425
xref: ncithesaurus:Left_Lung
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rvVjKy5wpEbGdrcN5Y29ycA
is_a: UBERON:0002048 ! implied link automatically realized ! lung
relationship: in_left_side_of UBERON:0000170
intersection_of: UBERON:0002048 ! lung
intersection_of: in_left_side_of UBERON:0000170 ! pair of lungs
[Term]
id: UBERON:0002169
name: alveolar sac
alt_id: UBERON:FMA_7317-MA_0000418
def: "." [Wikipedia:Alveolar_sac]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sacculus alveolaris" EXACT []
xref: BTO:0000061
xref: FMA:7317
xref: MA:0000418
xref: ncithesaurus:Alveolar_Sac
xref: OpenCyc:Mx4rwCvh75wpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0002170
name: upper lobe of right lung
alt_id: UBERON:FMA_7333-MA_0000429
comment: This class was created automatically from a combination of ontologies
synonym: "right cranial lobe of lung" EXACT []
synonym: "right lung cranial lobe" EXACT []
synonym: "right lung superior lobe" RELATED []
synonym: "right upper lobe" EXACT []
synonym: "right upper lobe of lung" EXACT []
synonym: "superior lobe of right lung" EXACT []
xref: EHDAA2:0001747
xref: FMA:7333
xref: galen:UpperLobeOfRightLung
xref: HOG:0000859
xref: MA:0000429
is_a: UBERON:0000101 ! lobe of lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0002171
name: lower lobe of right lung
alt_id: UBERON:FMA_7337-MA_0000428
comment: This class was created automatically from a combination of ontologies
synonym: "inferior lobe of right lung" EXACT []
synonym: "right caudal lobe of lung" EXACT []
synonym: "right lower lobe" EXACT []
synonym: "right lower lobe of lung" EXACT []
synonym: "right lung caudal lobe" EXACT []
synonym: "right lung inferior lobe" RELATED []
xref: EHDAA2:0001740
xref: FMA:7337
xref: galen:LowerLobeOfRightLung
xref: HOG:0000857
xref: MA:0000428
is_a: UBERON:0000101 ! lobe of lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0002172
name: alveolar atrium
alt_id: UBERON:FMA_7340-MA_0000419
def: "An atrium that is part of an alveolus of lung [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "alveolus of lung atrium" EXACT [OBOL:automatic]
synonym: "atrium alveolare" EXACT []
synonym: "atrium of alveolus" EXACT []
synonym: "atrium of alveolus of lung" EXACT [OBOL:automatic]
synonym: "atrium of lung alveolus" EXACT [OBOL:automatic]
synonym: "lung alveolus atrium" EXACT [OBOL:automatic]
xref: FMA:7340
xref: MA:0000419
is_a: UBERON:0001050 ! atrium
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002299
intersection_of: UBERON:0001050 ! atrium
intersection_of: part_of UBERON:0002299 ! alveolus of lung
[Term]
id: UBERON:0002173
name: alveolar duct
alt_id: UBERON:FMA_7341-MA_0000417
def: "Alveolar ducts are the tiny end ducts of the branching airways that fill the lungs. Each lung holds approximately 1.5 to 2 million of them. The tubules divide into two or three alveolar sacs at the distal end. They are formed from the confluence openings of several alveoli. Distal terminations of alveolar ducts are atria which then end in alveolar sacs. In human anatomy, respiratory bronchioles exists proximal to the alveolar ducts. The epithelial lining consists of smooth muscle knobs covered by nonciliated, simple cuboidal cells. The smooth muscle constricts under parasympathetic innervation and relax under sympathetic innervation. [WP,unvetted]." [Wikipedia:Alveolar_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:7341
xref: MA:0000417
xref: ncithesaurus:Alveolar_Duct
xref: OpenCyc:Mx4rvXmfV5wpEbGdrcN5Y29ycA
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0002174
name: middle lobe of lung
alt_id: UBERON:FMA_7383-MA_0000430
def: "The Right lung is divided into three lobes (as opposed to two lobes on the left), superior, middle, and inferior, by two interlobular fissures: [WP,unvetted]." [Wikipedia:Middle_lobe_of_right_lung]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intermediate lobe of right lung" EXACT []
synonym: "middle lobe of right lung" EXACT []
synonym: "right lung middle lobe" EXACT []
synonym: "right lung, middle lobe" EXACT []
synonym: "right middle lobe" EXACT []
synonym: "right middle lobe of lung" EXACT []
xref: FMA:7383
xref: galen:MiddleLobeOfLung
xref: galen:MiddleLobeOfRightLung
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Gray972.png/200px-Gray972.png
xref: MA:0000430
is_a: UBERON:0000101 ! lobe of lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0002175
name: intermediolateral nucleus
alt_id: UBERON:FMA_73915-MA_0002753
def: "The intermediolateral nucleus is a region of gray matter found in Rexed lamina VII of the spinal column. Rexed Lamina VII contains several well defined nuclei including the nucleus dorsalis, the intermediolateral cell column (lateral gray horn), and the sacral autonomic nucleus. It extends from the first thoracic through the third lumbar segment, and contains the autonomic motor neurons that give rise to the preganglionic fibers of the sympathetic system. [WP,unvetted]." [Wikipedia:Intermediolateral_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intermediolateral nucleus of spinal cord" EXACT []
synonym: "spinal cord intermediolateral nucleus" EXACT []
xref: FMA:73915
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Medulla_spinalis_-_Substantia_grisea_-_English.svg/200px-Medulla_spinalis_-_Substantia_grisea_-_English.svg.png
xref: MA:0002753
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002176
name: lateral cervical nucleus
alt_id: UBERON:FMA_73921-MA_0002755
comment: This class was created automatically from a combination of ontologies
xref: FMA:73921
xref: MA:0002755
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord
[Term]
id: UBERON:0002177
name: right main bronchus
alt_id: UBERON:FMA_7395-MA_0001849
def: "The right main bronchus (or right primary bronchus, or right principal bronchus) is a bronchus of the respiratory system. It is wider, shorter, and more vertical in direction than the left. It is about 2.5 cm. long, and enters the right lung nearly opposite the fifth thoracic vertebra. The azygos vein arches over it from behind; and the right pulmonary artery lies at first below and then in front of it. About 2 cm. from its commencement it gives off a branch to the upper lobe of the right lung. This is termed the eparterial branch of the bronchus, because it arises above the right pulmonary artery. The bronchus now passes below the artery, and is known as the hyparterial branch; it divides into two branches for the middle and lower lobes. [WP,unvetted]." [Wikipedia:Right_main_bronchus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "right bronchus" EXACT []
synonym: "right principal bronchus" EXACT []
xref: FMA:7395
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg
xref: MA:0001849
xref: ncithesaurus:Right_Main_Bronchus
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvoIuvJwpEbGdrcN5Y29ycA
is_a: UBERON:0002182 ! implied link automatically realized ! main bronchus
relationship: continuous_with UBERON:0002167
intersection_of: UBERON:0002182 ! main bronchus
intersection_of: continuous_with UBERON:0002167 ! right lung
[Term]
id: UBERON:0002178
name: left main bronchus
alt_id: UBERON:FMA_7396-MA_0001843
def: "The left main bronchus (or left primary bronchus, or left principal bronchus) is smaller in caliber but longer than the right, being nearly 5 cm long. It enters the root of the left lung opposite the sixth thoracic vertebra. It passes beneath the aortic arch, crosses in front of the esophagus, the thoracic duct, and the descending aorta, and has the left pulmonary artery lying at first above, and then in front of it. The left bronchus has no eparterial branch, and therefore it has been supposed by some that there is no upper lobe to the left lung, but that the so-called upper lobe corresponds to the middle lobe of the right lung. [WP,unvetted]." [Wikipedia:Left_main_bronchus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "left bronchus" EXACT []
synonym: "left principal bronchus" EXACT []
xref: FMA:7396
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg
xref: MA:0001843
xref: ncithesaurus:Left_Main_Bronchus
is_a: UBERON:0002182 ! implied link automatically realized ! main bronchus
relationship: continuous_with UBERON:0002168
intersection_of: UBERON:0002182 ! main bronchus
intersection_of: continuous_with UBERON:0002168 ! left lung
[Term]
id: UBERON:0002179
name: lateral funiculus
alt_id: UBERON:FMA_74000-ZFA_0000533
def: "The most lateral of the bundles of the anterior nerve roots is generally taken as a dividing line that separates the antero-lateral region into two parts, viz. , an anterior funiculus, between the anterior median fissure and the most lateral of the anterior nerve roots; and a lateral funiculus, between the exit of these roots and the postero-lateral sulcus. [WP,unvetted]." [Wikipedia:Lateral_funiculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateral funiculus of spinal cord" EXACT []
xref: FMA:74000
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png
xref: TAO:0000533
xref: ZFA:0000533
is_a: UBERON:0000122 ! neuron projection bundle
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002180
name: ventral funiculus
alt_id: UBERON:FMA_74003-ZFA_0000605
def: "The most lateral of the bundles of the anterior nerve roots is generally taken as a dividing line that separates the antero-lateral region into two parts, viz. , an anterior funiculus, between the anterior median fissure and the most lateral of the anterior nerve roots; and a lateral funiculus, between the exit of these roots and the postero-lateral sulcus. [WP,unvetted]." [Wikipedia:Ventral_funiculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior funiculus" EXACT []
synonym: "anterior funiculus of spinal cord" EXACT []
synonym: "ventral funiculus of spinal cord" EXACT []
xref: FMA:74003
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png
xref: TAO:0000605
xref: ZFA:0000605
is_a: UBERON:0000122 ! neuron projection bundle
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002181
name: substantia gelatinosa
alt_id: UBERON:FMA_74019-MA_0001124
def: "." [Wikipedia:Substantia_gelatinosa]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "central gelatinous substance of spinal cord" EXACT []
synonym: "gelatinous substance of dorsal horn of spinal cord" EXACT []
synonym: "gelatinous substance of posterior horn of spinal cord" EXACT []
xref: FMA:74019
xref: GAID:701
xref: MA:0001124
xref: ncithesaurus:Substantia_Gelatinosa
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord
[Term]
id: UBERON:0002182
name: main bronchus
alt_id: UBERON:FMA_7405-MA_0000438
def: "." [Wikipedia:Main_bronchus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bronchus principalis" EXACT []
synonym: "primary bronchus" EXACT []
synonym: "principal bronchus" EXACT []
xref: EFO:0000932
xref: EHDAA:3072
xref: EHDAA2:0001044
xref: FMA:7405
xref: HOG:0000370
xref: MA:0000438
xref: ncithesaurus:Main_Bronchus
xref: OpenCyc:Mx4rvoIuvJwpEbGdrcN5Y29ycA
is_a: UBERON:0002185 ! bronchus
[Term]
id: UBERON:0002183
name: lobar bronchus
alt_id: UBERON:FMA_7406-MA_0000437
def: "The lobar bronchus is the major airway within the respiratory tree that starts by division of the principal bronchi on both sides and ends at the point of its own subdivision into tertiary or segmental bronchi[GO]." [Wikipedia:Lobar_bronchus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "secondary bronchus" EXACT []
xref: EHDAA:4955
xref: EHDAA:4963
xref: EHDAA:4977
xref: EHDAA:4985
xref: EHDAA:4993
xref: EHDAA:8175
xref: EHDAA:8187
xref: EHDAA:8203
xref: EHDAA:8213
xref: EHDAA:8225
xref: FMA:7406
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Illu_quiz_lung05.jpg/200px-Illu_quiz_lung05.jpg
xref: MA:0000437
xref: ncithesaurus:Lobar_Bronchus
xref: OpenCyc:Mx4rwQMLXJwpEbGdrcN5Y29ycA
is_a: UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0002184
name: segmental bronchus
alt_id: UBERON:FMA_7407-MA_0000439
def: "The tertiary bronchi (also known as the segmental bronchi) arise from the secondary bronchi. The respiratory epithelium lining their lumen is surrounded by a layer of smooth muscle. This layer is composed of two ribbons of smooth muscle that spiral in opposite directions. The smooth muscle layer is surrounded by irregular plates of hyaline cartilage which help maintain the patency of the airway. Each of the tertiary bronchi serves a specific bronchopulmonary segment. There are 10 tertiary bronchi in the right lung, and eight in the left. The tertiary bronchi get smaller and divide into primary bronchioles. [WP,unvetted]." [Wikipedia:Segmental_bronchus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "tertiary bronchus" EXACT []
xref: EHDAA:7043
xref: EHDAA:7049
xref: EHDAA:7058
xref: EHDAA:7064
xref: EHDAA:7070
xref: FMA:7407
xref: HOG:0001446
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Illu_quiz_lung05.jpg/200px-Illu_quiz_lung05.jpg
xref: MA:0000439
xref: ncithesaurus:Segmental_Bronchus
xref: OpenCyc:Mx4rwQGFgZwpEbGdrcN5Y29ycA
is_a: UBERON:0002185 ! bronchus
[Term]
id: UBERON:0002185
name: bronchus
alt_id: UBERON:FMA_7409-MA_0000436-MIAA_0000133-XAO_0000121
def: "A portion of the airway that connects to the lungs[GO]." [Wikipedia:Bronchus]
comment: Note: term used as a generic class with subtypes left main bronchus etc. Do we need a class for the whole tree?
subset: uberon_slim
synonym: "bronchi" EXACT PLURAL []
synonym: "bronchial trunk" EXACT []
xref: BTO:0001340
xref: EFO:0000932
xref: FMA:7409
xref: GAID:346
xref: HOG:0000262
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/18/Respiratory_system_complete_numbered.svg/200px-Respiratory_system_complete_numbered.svg.png
xref: MA:0000436
xref: MAT:0000133
xref: MIAA:0000133
xref: ncithesaurus:Bronchus
xref: XAO:0000121
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0005178 ! implied link automatically realized ! thoracic cavity organ
relationship: part_of UBERON:0001558 ! lower respiratory tract
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0002186
name: bronchiole
alt_id: UBERON:FMA_7410-MA_0000422
def: "the first airway branch that no longer contains cartilage; it is a branch of the bronchi[GO]." [Wikipedia:Bronchiole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lobular bronchiole" EXACT []
xref: BTO:0002375
xref: EHDAA:8171
xref: EHDAA:8183
xref: EHDAA:8199
xref: EHDAA:8221
xref: FMA:7410
xref: HOG:0000675
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0000422
xref: ncithesaurus:Bronchiole
xref: OpenCyc:Mx4rvl9iDpwpEbGdrcN5Y29ycA
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0002187
name: terminal bronchiole
alt_id: UBERON:FMA_7411-MA_0000424
def: "A terminal bronchiole is a bronchiole at the end of the conducting zone. At the transition into the respiratory zone, alveoli become present. The terminal bronchiole is the most distal segment of the conducting zone. Each of the terminal bronchioles divides to form respiratory bronchioles which contain a small number of alveoli. Terminal bronchioles are lined with simple cuboidal epithelium containing Clara cells. Terminal bronchioles contain a limited number of ciliated cells and no goblet cells. Clara cells are non-ciliated, rounded protein secreting cells. Their secretions are a nonsticky, proteinaceous compound to maintain the airway in the smallest bronchioles. The secretion, called surfactant, reduces surface tension allowing for bronchioles to expand during inspiration and keeping the bronchioles from collapsing during expiration. Clara cells, a stem cell of the respiratory system, produce enzymes that detoxify substances dissolved in the respiratory fluid. [WP,unvetted]." [Wikipedia:Terminal_bronchiole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bronchiolus terminalis" EXACT []
xref: BTO:0003223
xref: FMA:7411
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0000424
xref: ncithesaurus:Terminal_Bronchiole
xref: OpenCyc:Mx4rwS7IU5wpEbGdrcN5Y29ycA
is_a: UBERON:0002186 ! bronchiole
[Term]
id: UBERON:0002188
name: respiratory bronchiole
alt_id: UBERON:FMA_7412-MA_0000423
def: "The respiratory bronchioles are interrupted by alveoli which are thin walled evaginations. Alveolar ducts are distal continuations of the respiratory bronchioles. [WP,unvetted]." [Wikipedia:Respiratory_bronchiole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bronchiolus respiratorius" EXACT []
xref: BTO:0003222
xref: FMA:7412
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0000423
xref: ncithesaurus:Respiratory_Bronchiole
xref: OpenCyc:Mx4rwS6ki5wpEbGdrcN5Y29ycA
is_a: UBERON:0002186 ! bronchiole
[Term]
id: UBERON:0002189
name: outer cortex of kidney
alt_id: UBERON:FMA_74285-MA_0001649
comment: This class was created automatically from a combination of ontologies
synonym: "outer renal cortex" EXACT []
xref: FMA:74285
xref: MA:0001649
is_a: UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0002190
name: subcutaneous adipose tissue
alt_id: UBERON:FMA_74315-MA_0000473
comment: This class was created automatically from a combination of ontologies
synonym: "fatty layer of subcutaneous tissue" EXACT []
xref: FMA:74315
xref: MA:0000473
is_a: UBERON:0001013 ! adipose tissue
[Term]
id: UBERON:0002191
name: subiculum
alt_id: UBERON:FMA_74414-MA_0000960
def: "The subiculum is the most inferior component of the hippocampal formation. It lies between the entorhinal cortex and the CA1 subfield of the hippocampus proper. It receives input from CA1 and entorhinal cortical layer III pyramidal neurons and is the main output of the hippocampus. The pyramidal neurons send projections to the nucleus accumbens, septal nuclei, prefrontal cortex, lateral hypothalamus, nucleus reuniens, mammillary nuclei, entorhinal cortex and amygdala. The pyramidal neurons in the subiculum exhibit transitions between two modes of action potential output: bursting and single spiking. The transitions between these two modes is thought to be important for routing information out of the hippocampus. It is the site responsible for ictal activity in some cases of human epilepsy. It has also been implicated in working memory and drug addiction. [WP,unvetted]." [Wikipedia:Subiculum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "subiculum hippocampi" EXACT []
xref: BTO:0003087
xref: FMA:74414
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Hippocampus_%28brain%29.jpg/200px-Hippocampus_%28brain%29.jpg
xref: MA:0000960
xref: ncithesaurus:Subiculum
xref: NIF_GrossAnatomy:birnlex_1305
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002421 ! hippocampal formation
[Term]
id: UBERON:0002192
name: choroidal fissure
alt_id: UBERON:FMA_74512-MA_0001305-XAO_0000474-ZFA_0001075
def: "The narrow cleft along the medial wall of the lateral ventricle along the margins of which the choroid plexus is attached; it lies between the upper surface of the thalamus and lateral edge of the fornix in the central part of the ventricle and between the terminal stria and fimbria hippocampi in the inferior horn[ZFA]." [ISBN:0815318960, ZFA:0001075]
comment: not to be confused with optic fissure. the choroidal fissure is a subarachnoid space
synonym: "chorioid fissure" RELATED [FMA:74512]
synonym: "choroid fissure" RELATED [FMA:74512, TAO:0001075]
xref: FMA:74512
xref: ncithesaurus:Choroidal_Fissure
xref: TAO:0001075
xref: ZFA:0001075
is_a: UBERON:0000464 ! anatomical space
disjoint_from: UBERON:0005412 ! optic fissure
relationship: part_of UBERON:0005358 ! ventricle of nervous system
[Term]
id: UBERON:0002193
name: hemolymphoid system
alt_id: UBERON:FMA_74562-MA_0000013
def: "Anatomical cluster consisting of the hematopoietic system and the lymphoid system, or its analogs." []
comment: This class was created automatically from a combination of ontologies
synonym: "haemolymphoid system" RELATED []
synonym: "hematolymphoid system" EXACT []
synonym: "lymphomyeloid complex" EXACT []
xref: FMA:74562
xref: MA:0000013
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002194
name: capsule of lymph node
alt_id: UBERON:FMA_74604-MA_0000739
def: "Capsule surrounding lymph node composed of connective tissue with some plain muscle fibers. from its internal surface are given off a number of membranous processes or trabeculae, consisting, in man, of connective tissue, with a small admixture of plain muscle fibers; but in many of the lower animals composed almost entirely of involuntary muscle[WP]." [Wikipedia:Lymph_node_capsule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lymph node capsule" EXACT []
xref: FMA:74604
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Lymphknoten_%28Schwein%29.jpg/200px-Lymphknoten_%28Schwein%29.jpg
xref: MA:0000739
xref: ncithesaurus:Lymph_Node_Capsule
is_a: UBERON:0003893 ! capsule
relationship: surrounds UBERON:0000029
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0000029 ! lymph node
relationship: has_part UBERON:0002384 ! connective tissue
relationship: surrounds UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002195
name: trabecula of lymph node
alt_id: UBERON:FMA_74605-MA_0000746
def: "Membranous process coming from capsule of lymph node[WP]." [Wikipedia:Lymph_node_trabeculae]
comment: This class was created automatically from a combination of ontologies
synonym: "lymph node trabecula" EXACT []
synonym: "lymph node trabeculum" EXACT []
xref: FMA:74605
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray598.png/200px-Gray598.png
xref: MA:0000746
xref: ncithesaurus:Lymph_Node_Trabecula
is_a: UBERON:0000440 ! trabecula
relationship: part_of UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002196
name: adenohypophysis
alt_id: UBERON:FMA_74627-MA_0000177-ZFA_0001282
def: "The glandular, anterior lobe of the pituitary gland. The anterior pituitary regulates several physiological processes including stress, growth, and reproduction[WP]. The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mamalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish[ZFA]." [Wikipedia:Adenohypophysis, ZFIN:curator]
subset: uberon_slim
synonym: "anterior lobe (hypophysis)" EXACT []
synonym: "anterior lobe of hypophysis" EXACT []
synonym: "anterior lobe of pituitary" EXACT []
synonym: "anterior lobe of pituitary gland" EXACT []
synonym: "anterior pituitary" EXACT []
synonym: "pituitary gland, anterior lobe" EXACT []
xref: BTO:0000040
xref: EFO:0000230
xref: EHDAA2:0001588
xref: EMAPA:16574
xref: EMAPA:16725
xref: FMA:74627
xref: HOG:0000141
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Gray1181.png/200px-Gray1181.png
xref: MA:0000177
xref: NIF_GrossAnatomy:birnlex_1581
xref: TAO:0001282
xref: ZFA:0001282
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0005356 ! Rathke's pouch
relationship: part_of UBERON:0000007 ! pituitary gland
[Term]
id: UBERON:0002197
name: median eminence of neurohypophysis
alt_id: UBERON:FMA_74634-MA_0000859
def: "The median eminence is part of the inferior boundary for the hypothalamus part of the human brain. A small swelling on the tuber cinereum posterior to the infundibulum - atop the pituitary stalk - the median eminence lies in the area roughly bounded on its posterolateral region by the cerebral peduncles, and on its anterolateral region by the optic chiasm. The median eminence is one of the seven areas of the brain devoid of a blood-brain barrier. [WP,unvetted]." [Wikipedia:Median_eminence]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "median eminence" EXACT []
synonym: "median eminence of hypothalamus" EXACT []
synonym: "median eminence of posterior lobe of pituitary gland" EXACT []
synonym: "median eminence of tuber cinereum" EXACT []
xref: BTO:0001954
xref: EHDAA:7540
xref: EHDAA2:0001080
xref: FMA:74634
xref: GAID:463
xref: HOG:0001179
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MA:0000859
xref: NIF_GrossAnatomy:birnlex_925
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001016 ! nervous system
relationship: part_of UBERON:0002198 ! neurohypophysis
[Term]
id: UBERON:0002198
name: neurohypophysis
alt_id: UBERON:FMA_74636-ZFA_0001271
def: "comprises the posterior lobe of the pituitary gland and is part of the endocrine system[WP]. part of the pituitary gland that secretes hormones involved in blood pressure regulation[GO]." [Wikipedia:Neurohypophysis]
subset: uberon_slim
synonym: "neurohypophysis" EXACT []
synonym: "pituitary gland, posterior lobe" EXACT []
synonym: "posterior lobe of pituitary" EXACT []
synonym: "posterior pituitary" EXACT []
xref: BTO:0000937
xref: EHDAA:7536
xref: EHDAA2:0001271
xref: FMA:74628
xref: HOG:0000142
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Pituitary_gland_representation.PNG/200px-Pituitary_gland_representation.PNG
xref: MA:0000178
xref: NIF_GrossAnatomy:birnlex_1586
xref: TAO:0001271
xref: ZFA:0001271
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0000007 ! pituitary gland
[Term]
id: UBERON:0002199
name: integument
alt_id: UBERON:FMA_74657-ZFA_0000368
def: "The outer protective barrier that separates the animal from its environment[ZFA]." [Wikipedia:Integument, ZFIN:curator]
comment: in FMA intergument = skin+superficial fascia(hypodermis)
subset: uberon_slim
synonym: "skin" RELATED []
xref: AAO:0000239
xref: BTO:0000634
xref: EHDAA2:0001844
xref: FMA:74657
xref: galen:Integument
xref: HAO:0000421
xref: TAO:0000368
xref: ZFA:0000368
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002416 ! integumental system
[Term]
id: UBERON:0002200
name: vasculature of head
alt_id: UBERON:FMA_74710-ZFA_0001267
def: "A vasculature that is part of a head [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "adult head vascular network" EXACT [OBOL:automatic]
synonym: "adult head vasculature" EXACT [OBOL:automatic]
synonym: "cranial vasculature" EXACT []
synonym: "head vascular network" EXACT [OBOL:automatic]
synonym: "head vasculature" RELATED []
synonym: "vascular network of adult head" EXACT [OBOL:automatic]
synonym: "vascular network of head" EXACT [OBOL:automatic]
synonym: "vasculature of adult head" EXACT [OBOL:automatic]
xref: FMA:74710
xref: TAO:0001267
xref: ZFA:0001267
is_a: UBERON:0002049 ! vasculature
relationship: part_of UBERON:0000033
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0002201
name: vasculature of trunk
alt_id: UBERON:FMA_74712-ZFA_0005024
def: "A vasculature that is part of a trunk [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "torso vascular network" EXACT [OBOL:automatic]
synonym: "torso vasculature" EXACT [OBOL:automatic]
synonym: "trunk vascular network" EXACT [OBOL:automatic]
synonym: "trunk vasculature" EXACT []
synonym: "vascular network of torso" EXACT [OBOL:automatic]
synonym: "vascular network of trunk" EXACT [OBOL:automatic]
synonym: "vasculature of torso" EXACT [OBOL:automatic]
xref: FMA:74712
xref: TAO:0005024
xref: ZFA:0005024
is_a: UBERON:0002049 ! vasculature
relationship: part_of UBERON:0002100
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0002202
name: submucosa of trachea
alt_id: UBERON:FMA_7472-MA_0001860
comment: This class was created automatically from a combination of ontologies
synonym: "submucosa of windpipe" EXACT [OBOL:automatic]
synonym: "trachea submucosa" EXACT []
synonym: "tracheal submucosa" EXACT []
synonym: "windpipe submucosa" EXACT [OBOL:automatic]
xref: FMA:7472
xref: MA:0001860
xref: ncithesaurus:Trachea_Submucosa
is_a: UBERON:0000009 ! submucosa
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0004777 ! implied link automatically realized ! respiratory system submucosa
relationship: part_of UBERON:0003126
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0002203
name: vasculature of eye
alt_id: UBERON:FMA_74743-ZFA_0007057
def: "A vasculature that is part of a eye [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "eye vascular network" EXACT [OBOL:automatic]
synonym: "eye vasculature" RELATED []
synonym: "ocular vasculature" EXACT []
synonym: "optic vasculature" RELATED []
synonym: "vascular network of eye" EXACT [OBOL:automatic]
xref: FMA:74743
xref: ZFA:0007057
is_a: UBERON:0002200 ! vasculature of head
relationship: part_of UBERON:0000970
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0002204
name: musculoskeletal system
alt_id: UBERON:FMA_7482-MA_0002418-XAO_0000168
def: "Anatomical system that provides locomotion and physical support to the organism." [Wikipedia:Musculoskeletal_system, XB:curator]
subset: uberon_slim
synonym: "musculo-skeletal system" EXACT []
xref: FMA:7482
xref: GAID:98
xref: HOG:0001275
xref: MA:0002418
xref: ncithesaurus:Musculoskeletal_System
xref: OpenCyc:Mx4rQRpVNgAKEdyHxgDggVfs8g
xref: XAO:0000168
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: has_part UBERON:0000383 ! musculature of body
[Term]
id: UBERON:0002205
name: manubrium of sternum
alt_id: UBERON:FMA_7486-ZFA_0001601
def: "broad, upper part of the sternum. Located ventrally with a quadrangular shape, wider superiorly and narrower inferiorly, it articulates with the clavicles and the first two ribs[WP]." [Wikipedia:Manubrium]
comment: not to be confused with manubrium of eardrum
subset: uberon_slim
synonym: "anterior process" RELATED []
synonym: "horiztonal process" RELATED []
synonym: "manubrium" EXACT []
synonym: "manubrium incudus" RELATED []
synonym: "manubrium of sternum" EXACT []
xref: AAO:0000680
xref: FMA:7486
xref: GAID:247
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray116.png/200px-Gray116.png
xref: OpenCyc:Mx4rvXOLAZwpEbGdrcN5Y29ycA
xref: TAO:0001553
xref: ZFA:0001601
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0000975 ! vertebrate sternum
[Term]
id: UBERON:0002206
name: mammillary body
alt_id: UBERON:FMA_74877-MA_0000174
def: "The mammilary body is a protrusion at the posterior end of the hypothalamus that contains hypothalamic nuclei[GO]." [Wikipedia:Mammillary_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "mamillary body" EXACT []
xref: FMA:74877
xref: GAID:652
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray1180.png/200px-Gray1180.png
xref: MA:0000174
xref: ncithesaurus:Mamillary_Body
xref: NIF_GrossAnatomy:birnlex_865
xref: ZFA:0000334
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0002207
name: xiphoid process
alt_id: UBERON:FMA_7488-MA_0001884
def: "The xiphoid process, also known as the xiphisternum, is a small cartilaginous extension to the lower part of the sternum which is usually ossified in the adult human. By age 15 to 29, the xiphoid usually fuses to the body of the sternum with a fibrous joint. Unlike the synovial articulation of major joints, this is non-movable. Much the way the first seven ribs articulate with the sternum, the cartilage in the celiac plexus joins on the xiphoid process, reinforcing it, and indirectly attaches the costal cartilage to the sternum. [WP,unvetted]." [Wikipedia:Xiphoid_process]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "xiphoid cartilage" EXACT []
synonym: "xiphoid process of sternum" EXACT []
xref: FMA:7488
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray117.png/200px-Gray117.png
xref: MA:0001884
xref: ncithesaurus:Xiphoid_Process
is_a: UBERON:0002236 ! costal cartilage
relationship: part_of UBERON:0000975 ! vertebrate sternum
[Term]
id: UBERON:0002208
name: sternebra
alt_id: UBERON:FMA_7489-MA_0001333
def: "The sternum is a long flat bone (or, in some models, set of three bones) shaped like a capital 'T' located in the center of the thorax (chest). It connects to the rib bones via cartilage, forming the anterior section of the rib cage with them, and thus helps to protect the lungs, heart and major blood vessels from physical trauma. The sternum is sometimes cut open to gain access to the thoracic contents when performing cardiothoracic surgery. [WP,unvetted]." [Wikipedia:Sternebra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:7489
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/12/Illu_thoracic_cage.jpg/200px-Illu_thoracic_cage.jpg
xref: MA:0001333
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0000975 ! vertebrate sternum
[Term]
id: UBERON:0002209
name: fibrous joint
alt_id: UBERON:FMA_7492-MA_0000321
def: "Nonsynovial joint in which the articulating bones or cartilages are connected by ligaments. Examples: sagittal suture, inferior tibiofibular syndesmosis, gomphosis." [Wikipedia:Fibrous_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "articulatio fibrosa" EXACT []
xref: AEO:0000178
xref: EHDAA2:0003178
xref: FMA:7492
xref: MA:0000321
xref: ZFA:0005156
is_a: UBERON:0000982 ! skeletal joint
[Term]
id: UBERON:0002210
name: syndesmosis
alt_id: UBERON:FMA_7494-MA_0001500
def: "Fibrous joint in which the articulating bones or cartilages of the vertebral column and the limbs as well as articulating ossicles, are connected by skeletal ligaments or membranes. Examples: Intervertebral syndesmosis, inferior tibiofibular joint." [Wikipedia:Syndesmosis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:7494
xref: MA:0001500
is_a: UBERON:0002209 ! fibrous joint
is_a: UBERON:0002213 ! cartilaginous joint
[Term]
id: UBERON:0002211
name: segment of nerve
alt_id: UBERON:FMA_74941-ZFA_0001328
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "neural segment" RELATED []
xref: FMA:74941
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system
relationship: part_of UBERON:0001021 ! nerve
[Term]
id: UBERON:0002212
name: macula of saccule of membranous labyrinth
alt_id: UBERON:FMA_74944-MA_0001201
def: "The saccule is the smaller of the two vestibular sacs; it is globular in form, and lies in the recessus sphæricus near the opening of the scala vestibuli of the cochlea. Its anterior part exhibits an oval thickening, the macula of saccule (or saccular macula), to which are distributed the saccular filaments of the acoustic nerve. [WP,unvetted]." [Wikipedia:Macula_of_saccule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "macula of membranous labyrinth saccule" EXACT [OBOL:automatic]
synonym: "macula of saccule" EXACT []
synonym: "macula of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "membranous labyrinth saccule macula" EXACT [OBOL:automatic]
synonym: "saccular macula of membranous labyrinth" EXACT []
synonym: "saccular maculs" RELATED []
synonym: "saccule macula" EXACT [OBOL:automatic]
synonym: "saccule of membranous labyrinth macula" EXACT [OBOL:automatic]
synonym: "sacculus (labyrinthus vestibularis) macula" EXACT [OBOL:automatic]
xref: FMA:74944
xref: MA:0001201
xref: ncithesaurus:Macula_of_Saccule
xref: ZFA:0007000
is_a: UBERON:0000054 ! macula
relationship: part_of UBERON:0001854
intersection_of: UBERON:0000054 ! macula
intersection_of: part_of UBERON:0001854 ! saccule of membranous labyrinth
relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth
[Term]
id: UBERON:0002213
name: cartilaginous joint
alt_id: UBERON:FMA_7496-MA_0000320
def: "Nonsynovial joint in which the articulating bones or cartilages are connected by cartilage. Examples: Spheno-occipital synchondrosis, first sternocostal joint, pubic symphysis." [Wikipedia:Cartilaginous_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "articulatio cartilaginea" EXACT []
xref: FMA:7496
xref: MA:0000320
xref: ZFA:0005155
is_a: UBERON:0000982 ! skeletal joint
[Term]
id: UBERON:0002214
name: macula of utricle of membranous labyrinth
alt_id: UBERON:FMA_74960-MA_0001203
def: "The portion of the utricle which is lodged in the recess forms a sort of pouch or cul-de-sac, the floor and anterior wall of which are thickened, and form the macula of utricle (or utricular macula), which receives the utricular filaments of the vestibulocochlear nerve. [WP,unvetted]." [Wikipedia:Macula_of_utricle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "macula of membranous labyrinth utricle" EXACT [OBOL:automatic]
synonym: "macula of utricle" EXACT []
synonym: "macula of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "membranous labyrinth utricle macula" EXACT [OBOL:automatic]
synonym: "utricle macula" EXACT [OBOL:automatic]
synonym: "utricle of membranous labyrinth macula" EXACT [OBOL:automatic]
synonym: "utricular macula" RELATED []
synonym: "utriculus (labyrinthus vestibularis) macula" EXACT [OBOL:automatic]
xref: FMA:74960
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Bigotolith.jpg/200px-Bigotolith.jpg
xref: MA:0001203
xref: ncithesaurus:Macula_of_Utricle
xref: ZFA:0000030
is_a: UBERON:0000054 ! macula
relationship: part_of UBERON:0001853
intersection_of: UBERON:0000054 ! macula
intersection_of: part_of UBERON:0001853 ! utricle of membranous labyrinth
relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth
[Term]
id: UBERON:0002215
name: synchondrosis
alt_id: UBERON:FMA_7497-MA_0001501
def: "Cartilaginous joint in which the articulating bones or cartilages are connected by hyaline cartilage. Examples: spheno-occipital synchondrosis, first sternocostal joint." [Wikipedia:Synchondrosis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "epiphysial cartilage" EXACT []
synonym: "primary cartilaginous joint" EXACT []
xref: FMA:7497
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/76/Gray297.png/200px-Gray297.png
xref: MA:0001501
is_a: UBERON:0002209 ! fibrous joint
is_a: UBERON:0002213 ! cartilaginous joint
[Term]
id: UBERON:0002216
name: symphysis
alt_id: UBERON:FMA_7498-MA_0001504
def: "Cartilaginous joint in which the articulating bones or cartilages are connected by fibrocartilage. Examples: pubic symphysis, intervertebral symphysis, manubriosternal joint." [Wikipedia:Symphysis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "secondary cartilaginous joint" EXACT []
xref: FMA:7498
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Gray298.png/200px-Gray298.png
xref: MA:0001504
is_a: UBERON:0002209 ! fibrous joint
is_a: UBERON:0002213 ! cartilaginous joint
[Term]
id: UBERON:0002217
name: synovial joint
alt_id: UBERON:FMA_7501-MA_0000322
def: "Joint in which the articulating bones or cartilages are connected by an articular capsule which encloses a synovial membrane and a synovial cavity. Examples: Temporomandibular joint, knee joint." [Wikipedia:Synovial_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "articulatio synoviale" EXACT []
xref: AEO:0000183
xref: EHDAA2:0003183
xref: FMA:7501
xref: galen:SynovialJoint
xref: MA:0000322
xref: OpenCyc:Mx4rv2bBV5wpEbGdrcN5Y29ycA
xref: ZFA:0005153
is_a: UBERON:0000982 ! skeletal joint
[Term]
id: UBERON:0002218
name: tympanic ring
alt_id: UBERON:FMA_75053-MA_0001225
def: "the bony ring at the ear canal to which the tympanic membrane is attached." [MP:0000030]
comment: This class was created automatically from a combination of ontologies
xref: AAO:0000615
xref: FMA:75053
xref: MA:0001225
is_a: UBERON:0000466 ! immaterial anatomical entity
relationship: part_of UBERON:0001756 ! middle ear
relationship: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0002219
name: subfornical organ
alt_id: UBERON:FMA_75260-MA_0000940
def: "The subfornical organ, situated on the ventral surface of the fornix, at the foramen of Monro, is one of the circumventricular organs of the brain. [WP,unvetted]." [Wikipedia:Subfornical_organ]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:75260
xref: GAID:795
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray715.png/200px-Gray715.png
xref: MA:0000940
xref: NIF_GrossAnatomy:nlx_anat_100314
is_a: UBERON:0000062 ! organ
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002221
name: fontanelle
alt_id: UBERON:FMA_75438-MA_0001465
def: "Anatomical structure that is a membranous gap between bones of the skull[TAO]. In humans: Fontanelles are soft spots on a baby's head which, during birth, enable the bony plates of the skull to flex, allowing the child's head to pass through the birth canal. The ossification of the bones of the skull cause the fontanelles to close over by a child's second birthday. The closures eventually form the sutures of the neurocranium. Although there are the two anterior and posterior fontanelles, there are two more fontanelles of interest, the mastoid fontanelle, and the sphenoidal fontanelle[WP]." [Wikipedia:Fontanelle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fontanel" EXACT []
xref: FMA:75438
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray197.png/200px-Gray197.png
xref: MA:0001465
xref: ncithesaurus:Fontanelle
xref: TAO:0001738
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: adjacent_to UBERON:0003685 ! cranial suture
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0002222
name: perichondrium
alt_id: UBERON:FMA_75446-ZFA_0001634
def: "Portion of connective tissue which surrounds cartilage of developing bone." [Wikipedia:Perichondrium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cartilage connective tissue" RELATED []
synonym: "perichondral region of cartilage" RELATED []
synonym: "perichondral region of cartilage element" RELATED []
xref: FMA:75446
xref: TAO:0001643
xref: ZFA:0001634
is_a: UBERON:0002384 ! connective tissue
relationship: surrounds UBERON:0002418 ! cartilage
[Term]
id: UBERON:0002223
name: endolymphatic sac
alt_id: UBERON:FMA_75639-MA_0001188
def: "From the posterior wall of the saccule a canal, the ductus endolymphaticus, is given off; this duct is joined by the ductus utriculosaccularis, and then passes along the aquaeductus vestibuli and ends in a blind pouch, the endolymphatic sac, on the posterior surface of the petrous portion of the temporal bone, where it is in contact with the dura mater. Studies suggest that the endolymphatic duct and endolymphatic sac perform both absorptive and secretory, as well as phagocytic and immunodefensive,functions . [WP,unvetted]." [Wikipedia:Endolymphatic_sac]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:7761
xref: EHDAA2:0000441
xref: FMA:75639
xref: GAID:887
xref: HOG:0000791
xref: MA:0001188
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002049 ! vasculature
[Term]
id: UBERON:0002224
name: thoracic cavity
alt_id: UBERON:FMA_7565-MA_0000032
def: "Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm. Examples: There is only one thoracic cavity." [Wikipedia:Thoracic_cavity]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cavity of chest" EXACT []
synonym: "cavity of thorax" EXACT []
synonym: "chest cavity" EXACT []
synonym: "pectoral cavity" EXACT []
xref: FMA:7565
xref: GAID:93
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png
xref: MA:0000032
xref: ncithesaurus:Thoracic_Cavity
xref: OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg
xref: OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0002225
name: costal arch
alt_id: UBERON:FMA_7569-MA_0001396
comment: This class was created automatically from a combination of ontologies
xref: FMA:7569
xref: MA:0001396
xref: ncithesaurus:Costal_Arch
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002228 ! rib
[Term]
id: UBERON:0002226
name: basilar membrane of cochlea
alt_id: UBERON:FMA_75706-MA_0001190
def: "a stiff structural element that separates two liquid-filled tubes that run along the coil of the cochlea, the scala media and the scala tympani[WP]." [Wikipedia:Basilar_membrane]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "basilar membrane" EXACT []
xref: FMA:75706
xref: GAID:872
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Organ_of_corti.svg/200px-Organ_of_corti.svg.png
xref: MA:0001190
xref: ncithesaurus:Basilar_Membrane
xref: NIF_GrossAnatomy:birnlex_2521
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002227
name: spiral organ of cochlea
alt_id: UBERON:FMA_75715-MA_0001193
def: "The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cochlear spiral organ" EXACT []
synonym: "organ of corti" RELATED []
synonym: "spiral organ" EXACT []
synonym: "spiral organ of corti" EXACT []
xref: BTO:0001691
xref: EFO:0001364
xref: FMA:75715
xref: GAID:772
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png
xref: MA:0001193
xref: ncithesaurus:Organ_of_Corti
xref: NIF_GrossAnatomy:birnlex_2526
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002228
name: rib
alt_id: UBERON:FMA_7574-MA_0000315-ZFA_0000538
def: "An intersegmental rod-shaped bone that forms in the peritoneal membrane and attach to the vertebral parapophyses. They protect and support internal organs. In most vertebrates, ribs surround the chest. they enable lungs to expand by expanding the chest, they also protect the lungs, heart, and other internal organs of the thorax. In some animals, especially snakes, ribs may provide support and protection for the entire body." [Wikipedia:Rib, ZFIN:curator]
comment: Humans have 24 ribs (12 pairs). The first seven sets of ribs, known as "true ribs", are directly attached to the sternum through the costal cartilage. The following five sets are known as "false ribs", three of these sharing a common cartilaginous connection to the sternum, while the last two (eleventh and twelfth ribs) are termed floating ribs (costae fluitantes) or vertebral ribs. They are attached to the vertebrae only, and not to the sternum or cartilage coming off of the sternum. Some people are missing one of the two pairs of floating ribs, while others have a third pair. Rib removal is the surgical excision of ribs for therapeutic or cosmetic reasons. In fish, there are often two sets of ribs attached to the vertebral column. One set, the dorsal ribs, are found in the dividing septum between the upper and lower parts of the main muscle segments, projecting roughly sideways from the vertebral column. The second set, of ventral ribs arise from the vertebral column just below the dorsal ribs, and enclose the lower body, often joining at the tips. Not all species possess both types of rib, with the dorsal ribs being most commonly absent. Sharks, for example, have no dorsal ribs, and only very short ventral ribs, while lampreys have no ribs at all. In some teleosts, there may be additional rib-like bones within the muscle mass. Tetrapods, however, only ever have a single set of ribs which are probably homologous with the dorsal ribs of fishes. In the early tetrapods, every vertebra bore a pair of ribs, although those on the thoracic vertebrae are typically the longest. The sacral ribs were stout and short, since they formed part of the pelvis, connecting the backbone to the hip bones.[1] In most subsequent forms, many of these early ribs have been lost, and in living amphibians and reptiles, there is great variation in rib structure and number. For example, turtles have only eight pairs of ribs, which are developed into a bony or cartilagenous carapace and plastron, while snakes have numerous ribs running along the full length of their trunk. Frogs typically have no ribs, aside from a sacral pair, which form part of the pelvis.[1]. In birds, ribs are present as distinct bones only on the thoracic region, although small fused ribs are present on the cervical vertebrae. The thoracic ribs of birds possess a wide projection to the rear; this uncinate process is an attachment for the shoulder muscles.[1]. Mammals usually also only have distinct ribs on the thoracic vertebra, although fixed cervical ribs are also present in monotremes. In marsupials and placental mammals, the cervical and lumbar ribs are found only as tiny remnants fused to the vertebrae, where they are referred to as transverse processes. In general, the structure and number of the true ribs in humans is similar to that in other mammals. Unlike reptiles, caudal ribs are never found in mammals.[1]
subset: uberon_slim
synonym: "dorsal rib" RELATED []
synonym: "pleural rib" RELATED []
xref: AAO:0000545
xref: FMA:7574
xref: GAID:245
xref: galen:Rib
xref: HOG:0001154
xref: MA:0000315
xref: ncithesaurus:Rib
xref: OpenCyc:Mx4rvVjNoZwpEbGdrcN5Y29ycA
xref: TAO:0000538
xref: ZFA:0000538
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003459 ! implied link automatically realized ! chest bone
is_a: UBERON:0004247 ! implied link automatically realized ! back bone
relationship: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0002091 ! appendicular skeleton
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0002229
name: interparietal bone
alt_id: UBERON:FMA_75748-MA_0001467
def: "the bone of the cranium that lies above and anterior to the occipital bone in some mammals." [MP:0000077]
comment: This class was created automatically from a combination of ontologies
synonym: "inter-parietal bone" EXACT [EMAPA:19017]
synonym: "interparietal" EXACT [EHDAA:9530]
synonym: "post-parietal bone" RELATED [HOG:0001327]
synonym: "postparietal" RELATED [HOG:0001327]
synonym: "postparietal bone" RELATED [HOG:0001327]
xref: EHDAA:9530
xref: EMAPA:19017
xref: FMA:75748
xref: HOG:0001327
xref: MA:0001467
is_a: UBERON:0001474 ! bone
is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0002230
name: head of rib
alt_id: UBERON:FMA_7575-MA_0001415
def: "The head of the rib is the end of a rib closest to the vertebral column, with which it articulates with. It is marked by a kidney-shaped articular surface, divided by a horizontal crest into two facets for articulation with the depression formed on the bodies of two adjacent thoracic vertebrae; the upper facet is the smaller; to the crest is attached the interarticular ligament. [WP,unvetted]." [Wikipedia:Head_of_rib]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "rib head" EXACT []
xref: FMA:7575
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5c/Gray122.png/200px-Gray122.png
xref: MA:0001415
xref: ncithesaurus:Rib_Head
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002228 ! rib
[Term]
id: UBERON:0002231
name: body of rib
alt_id: UBERON:FMA_7577-MA_0001416
comment: This class was created automatically from a combination of ontologies
synonym: "rib body" EXACT []
synonym: "rib shaft" EXACT []
synonym: "shaft of rib" EXACT []
xref: FMA:7577
xref: MA:0001416
xref: ncithesaurus:Rib_Shaft
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002228 ! rib
[Term]
id: UBERON:0002232
name: olfactory gland
alt_id: UBERON:FMA_75801-MA_0000287
def: "Bowman's glands (aka olfactory glands, glands of Bowman) are situated in the olfactory mucosa, beneath the olfactory epithelium, in the lamina propria, a connective tissue also containing fibroblasts, blood vessels, and bundles of fine axons from the olfactory neurons. The structure of the Bowman's glands consists of an acinus in the lamina propria and a secretory duct going out through the olfactory epithelium. Electron microscopy studies show that Bowman's glands contain cells with large secretory vesicles.[2] Bowman's glands might secrete proteins such as Lysozyme, amylase and IgA similarly to serous glands. The exact composition of the secretions from Bowman's glands is unclear, but there is evidence that Bowman's glands do not produce odorant binding protein[WP]." [Wikipedia:Olfactory_glands]
synonym: "Bowman's gland" RELATED []
synonym: "olfactory gland of Bowman" EXACT []
xref: BTO:0001697
xref: FMA:75801
xref: MA:0000287
is_a: UBERON:0002530 ! gland
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001997 ! olfactory epithelium
[Term]
id: UBERON:0002233
name: tectorial membrane of cochlea
alt_id: UBERON:FMA_75805-MA_0001199
def: "." [Wikipedia:Tectorial_membrane]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "tectorial membrane" EXACT []
synonym: "tectorial membrane of spiral organ of cochlea" EXACT []
xref: FMA:75805
xref: GAID:876
xref: MA:0001199
xref: ncithesaurus:Tectorial_Membrane
xref: NIF_GrossAnatomy:birnlex_2531
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002234
name: proximal phalanx of finger
alt_id: UBERON:FMA_75816-MA_0001395
def: "A proximal phalanx that is part of a finger [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "proximal phalanx of hand" EXACT []
xref: FMA:75816
xref: MA:0001395
xref: ncithesaurus:Proximal_Phalanx_of_Hand
is_a: UBERON:0001436 ! phalanx of finger
is_a: UBERON:0004302 ! implied link automatically realized ! proximal phalanx
relationship: part_of UBERON:0002389
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0002235
name: tubercle of rib
alt_id: UBERON:FMA_7583-MA_0001417
def: "The tubercle of a rib is an eminence on the posterior surface, at the junction of the neck and body of the rib, and nearer the lower than the upper border. It consists of an articular and a non-articular portion. The articular portion, the lower and more medial of the two, presents a small, oval surface for articulation with the end of the transverse process of the lower of the two vertebrae to which the head is connected. The non-articular portion is a rough elevation, and affords attachment to the ligament of the tubercle. The tubercle is much more prominent in the upper than in the lower ribs[WP]." [Wikipedia:Tubercle_(rib)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "rib tubercle" EXACT []
xref: FMA:7583
xref: MA:0001417
xref: ncithesaurus:Rib_Tubercle
is_a: UBERON:0004530 ! implied link automatically realized ! bony projection
is_a: UBERON:0005813 ! implied link automatically realized ! tubercle
relationship: part_of UBERON:0002231
intersection_of: UBERON:0005813 ! tubercle
intersection_of: part_of UBERON:0002231 ! body of rib
[Term]
id: UBERON:0002236
name: costal cartilage
alt_id: UBERON:FMA_7591-MA_0000106
def: "The costal cartilages are bars of hyaline cartilage which serve to prolong the ribs forward and contribute very materially to the elasticity of the walls of the thorax. [WP,unvetted]." [Wikipedia:Costal_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:7591
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cc/Gray315.png/200px-Gray315.png
xref: MA:0000106
xref: ncithesaurus:Costal_Cartilage
xref: OpenCyc:Mx4rwP1g3pwpEbGdrcN5Y29ycA
is_a: UBERON:0002418 ! cartilage
is_a: UBERON:0003572 ! implied link automatically realized ! chest connective tissue
is_a: UBERON:0004267 ! implied link automatically realized ! back connective tissue
relationship: part_of UBERON:0002228 ! rib
[Term]
id: UBERON:0002237
name: true rib
alt_id: UBERON:FMA_7592-MA_0001419
def: "The first seven ribs are connected behind with the vertebral column, and in front, through the intervention of the costal cartilages, with the sternum; they are called true ribs or vertebro-sternal ribs. False ribs are interconnected membranous structures that are connected with the sternum process. [WP,unvetted]." [Wikipedia:True_ribs]
comment: This class was created automatically from a combination of ontologies
synonym: "costa vera" EXACT []
xref: FMA:7592
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Gray115.png/200px-Gray115.png
xref: MA:0001419
xref: OpenCyc:Mx4rv4-iWJwpEbGdrcN5Y29ycA
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0002238
name: false rib
alt_id: UBERON:FMA_7594-MA_0001398
def: "The false ribs are the five sets of ribs below the top seven true ribs. Of these: the first three (eighth, ninth, and tenth rib) have their cartilages attached to the cartilage of the rib above (vertebro-chondral): the last two are free at their anterior extremities and are termed floating ribs or vertebral ribs. [WP,unvetted]." [Wikipedia:False_rib]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "costa spuria" EXACT []
xref: FMA:7594
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3d/Gray115.png/200px-Gray115.png
xref: MA:0001398
xref: OpenCyc:Mx4rwLzzTZwpEbGdrcN5Y29ycA
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0002239
name: floating rib
alt_id: UBERON:FMA_7595-MA_0001399
def: "Floating ribs are four atypical ribs (two lowermost pairs, XI-XII) in the human ribcage. They are called so because they are attached to the vertebrae only, and not to the sternum or cartilage coming off of the sternum. Some people are missing one of the two pairs. Others have a third pair. Most, however, possess only two pairs. Their position can be permanently altered by a form of body modification called tightlacing, which uses a corset to compress and move the ribs. [WP,unvetted]." [Wikipedia:Floating_rib]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "costa fluitante" EXACT []
xref: FMA:7595
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Skeleton_woman_back.png/200px-Skeleton_woman_back.png
xref: MA:0001399
xref: OpenCyc:Mx4rvaPCWZwpEbGdrcN5Y29ycA
is_a: UBERON:0002238 ! false rib
[Term]
id: UBERON:0002240
name: spinal cord
alt_id: UBERON:FMA_7647-MA_0000216-MIAA_0000183-XAO_0000020-ZFA_0000075
def: "Organ component of neuraxis that has as its parts gray matter and white matter that surround the central canal. Examples: There is only one spinal cord. // Elongated, approximately cylindrical part of the central nervous system that lies in the vertebral canal and from which the spinal nerves emerge." [OMD:spinal+cord, Wikipedia:Spinal_cord]
comment: TODO: add superclass to unify with VNC?
subset: uberon_slim
xref: BTO:0001279
xref: EFO:0000110
xref: EHDAA:2863
xref: EHDAA2:0001891
xref: FMA:7647
xref: GAID:695
xref: HOG:0000601
xref: MA:0000216
xref: MAT:0000183
xref: MIAA:0000183
xref: ncithesaurus:Spinal_Cord
xref: NIF_GrossAnatomy:birnlex_1709
xref: OpenCyc:Mx4rvVjjk5wpEbGdrcN5Y29ycA
xref: TAO:0000075
xref: XAO:0000020
xref: ZFA:0000075
is_a: UBERON:0000489 ! cavitated compound organ
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005174 ! implied link automatically realized ! back organ
relationship: develops_from UBERON:0003076 ! posterior neural tube
relationship: part_of UBERON:0001017 ! central nervous system
relationship: part_of UBERON:0001137 ! back
relationship: spatially_disjoint_from UBERON:0000955 ! brain
[Term]
id: UBERON:0002241
name: chondrocranium
alt_id: UBERON:FMA_76621-XAO_0003059-ZFA_0001424
def: "Anatomical cluster that is part of the cranium and composed entirely of either cartilage, cartilage replacement bones or a mixture of both[ZFA]. that part of the neurocranium formed by endochondral ossification and comprising the bones of the base of the skull[TFD]." [http://medical-dictionary.thefreedictionary.com/chondrocranium, ZFA:0001424]
comment: note the definition here specifically mentions cartilage or cartilage replacement bones. we make chondrocranium part_of neurocranium
synonym: "neurocranium" RELATED INCONSISTENT [MA:0000317]
xref: EHDAA2:0000243
xref: HOG:0000288
xref: MA:0000317
xref: TAO:0001424
xref: ZFA:0001424
is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
relationship: develops_from UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0002242
name: nucleus pulposus
alt_id: UBERON:FMA_76703-MA_0000112
def: "a jelly-like connective tissue in the middle of the spinal disc. It is the remnant of the notochord. It functions to distribute hydraulic pressure in all directions within each disc under compressive loads. The nucleus pulposus consists of chondrocytes, collagen fibrils, and proteoglycan aggrecans that have hyaluronic long chains which attract water. Attached to each hyaluronic chain are side chains of chondroitin sulfate and keratan sulfate[WP]." [Wikipedia:Nucleus_pulposus]
subset: uberon_slim
synonym: "pulpy nucleus" EXACT []
xref: BTO:0003626
xref: FMA:76703
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d9/Cervical_vertebra_english.png/200px-Cervical_vertebra_english.png
xref: MA:0000112
is_a: UBERON:0002384 ! connective tissue
relationship: surrounded_by UBERON:0001066 ! intervertebral disk
[Term]
id: UBERON:0002243
name: cutaneous vein
alt_id: UBERON:FMA_76720-MA_0002098
comment: This class was created automatically from a combination of ontologies
xref: FMA:76720
xref: MA:0002098
xref: ncithesaurus:Cutaneous_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002244
name: premaxilla
alt_id: UBERON:FMA_76869-MA_0001493-ZFA_0000567
def: "The premaxilla is a bone of the upper jaw. It is an L-shaped bone first visible as a thin sliver in the anterodorsal region of the upper lip, anterior to the dorsal tip of the maxilla (5.7 mm). In the adult, the premaxilla is ligamentously attached to its counterpart at the midline and the kinethmoid posterodorsally, by the premaxillo-rostroid ligaments. Premaxillary teeth are absent in zebrafish." [Wikipedia:Premaxilla, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "premaxillae" RELATED []
xref: AAO:0000461
xref: EHDAA:6962
xref: EHDAA:8033
xref: EHDAA2:0001496
xref: FMA:76869
xref: HOG:0000426
xref: MA:0001493
xref: TAO:0000567
xref: ZFA:0000567
is_a: UBERON:0002514 ! intramembranous bone
[Term]
id: UBERON:0002245
name: hemisphere of cerebellum
alt_id: UBERON:FMA_76925-MA_0000200
def: "The cerebellum consists of three parts, a median and two lateral, which are continuous with each other, and are substantially the same in structure. The median portion is constricted, and is called the vermis, from its annulated appearance which it owes to the transverse ridges and furrows upon it; the lateral expanded portions are named the hemispheres. The lateral hemisphere is considered the portion of the cerebellum to develop most recently. [WP,unvetted]." [Wikipedia:Cerebellar_hemisphere]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cerebellar hemisphere" EXACT []
synonym: "cerebellum hemisphere" EXACT []
synonym: "Hemisphere of cerebellum [H II - H X]" EXACT []
xref: FMA:76925
xref: MA:0000200
xref: NIF_GrossAnatomy:birnlex_1575
is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex
is_a: UBERON:0002946 ! regional part of cerebellum
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0002246
name: dorsal thoracic nucleus
alt_id: UBERON:FMA_77023-MA_0001121
def: "." [Wikipedia:Clarke's_column]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Clarke's column" EXACT []
synonym: "Clarke's nucleus" EXACT []
synonym: "posterior thoracic nucleus" EXACT []
synonym: "spinal cord dorsal nucleus" EXACT []
synonym: "Stilling-Clarke's column" EXACT []
synonym: "Stilling-Clarke's nucleus" EXACT []
xref: FMA:77023
xref: MA:0001121
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord
[Term]
id: UBERON:0002247
name: uterine horn
alt_id: UBERON:FMA_77053-MA_0000393
def: "The uterine horns are the points where the uterus and the uterine tubes meet. It is one of the points of attachment for the round ligament of uterus (the other being the mons pubis). The uterine horns are far more prominent in other animals than they are in humans. File:Wikitext. svg This article may need to be wikified to meet Wikipedia's quality standards. Please help by adding relevant internal links, or by improving the article's layout. Occasionally, if a Fallopian tube does not connect, the uterine horn will fill with blood each month, and a minor one day surgery will be performed to remove it. Often, people who are born with this have trouble getting pregnant, as they only can once every other month, as both ovaries are functional. The spare egg, that cannot travel the fallopian tube, is absorbed into the body. [WP,unvetted]." [Wikipedia:Uterine_horn]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EFO:0000975
xref: FMA:77053
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Illu_female_pelvis.jpg/200px-Illu_female_pelvis.jpg
xref: MA:0000393
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0002248
name: transverse pericardial sinus
alt_id: UBERON:FMA_77132-MA_0001880
def: "There are two Pericardial sinuses: transverse and oblique. The cul-de-sac enclosed between the limbs of the inverted U of the venous mesocardium lies behind the left atrium and is known as the oblique sinus. . The passage between the venous and arterial mesocardia—i.e. , between the aorta and pulmonary artery in front and the superior vena cava behind—is termed the transverse sinus. Also, the sinus that forms in the pericardial cavity where the dorso-mesentary pericardium reside. Can be used to pass ligature during cardiac surgery. [WP,unvetted]." [Wikipedia:Transverse_pericardial_sinus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Thiele's canal" EXACT []
synonym: "transverse sinus of pericardial cavity" EXACT []
xref: EHDAA:796
xref: EHDAA2:0002077
xref: FMA:77132
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png
xref: MA:0001880
is_a: UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0002249
name: median artery
alt_id: UBERON:FMA_77142-MA_0001999
comment: This class was created automatically from a combination of ontologies
xref: FMA:77142
xref: MA:0001999
xref: ncithesaurus:Median_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002250
name: popliteal artery
alt_id: UBERON:FMA_77155-MA_0002021
def: "In human anatomy, the popliteal artery is defined as the extension of the 'superficial' femoral artery after passing through the adductor canal and adductor hiatus above the knee. The termination of the popliteal artery is its bifurcation into the anterior tibial artery and posterior tibial artery. The popliteal artery, through numerous smaller branches, supplies blood to the knee joint and muscles in the thigh and calf. It is accompanied, along its length, by the popliteal vein. [WP,unvetted]." [Wikipedia:Popliteal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:77155
xref: GAID:504
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a2/Popliteal_artery.png/200px-Popliteal_artery.png
xref: MA:0002021
xref: ncithesaurus:Popliteal_Artery
xref: OpenCyc:Mx4rvduV6pwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002251
name: iliocostalis
alt_id: UBERON:FMA_77177-MA_0002319
def: "The iliocostalis is the muscle immediately lateral to the longissimus that is the nearest to the furrow that separates the epaxial muscles from the hypaxial. It lies very deep to the fleshy portion of the serratus ventralis (serratus anterior). [WP,unvetted]." [Wikipedia:Iliocostalis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:77177
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Iliostalis.png/200px-Iliostalis.png
xref: MA:0002319
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0002252
name: splenius
alt_id: UBERON:FMA_77180-MA_0002382
def: "." [Wikipedia:Splenius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:77180
xref: MA:0002382
xref: ncithesaurus:Splenius
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0002253
name: incisive bone
alt_id: UBERON:FMA_77231-MA_0001485
def: "The incisive bone is the portion of the maxilla adjacent to the incisors. It is a pair of small cranial bones at the very tip of the jaws of many animals, usually bearing teeth, but not always. They are connected to the maxilla and the nasals. The term premaxilla can also be used to refer to the incisive bone. [WP,unvetted]." [Wikipedia:Incisive_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:77231
xref: MA:0001485
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0002254
name: thyroglossal duct
alt_id: UBERON:FMA_77274-MA_0000130
def: "The thyroglossal duct is an embryological anatomical structure forming an open connection between the initial area of development of the thyroid gland and its final position. The thyroid gland starts developing in the oropharynx in the fetus and descends to its final position taking a path through the tongue, hyoid bone and neck muscles. The connection between its original position and its final position is the thyroglossal duct. This duct normally atrophies and closes off before birth but can remain open in some people. [WP,unvetted]." [Wikipedia:Thyroglossal_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:77274
xref: HOG:0000746
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fd/Illu08_thyroid.jpg/200px-Illu08_thyroid.jpg
xref: MA:0000130
xref: ncithesaurus:Thyroglossal_Duct
is_a: UBERON:0000058 ! duct
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0002255
name: vomeronasal organ
alt_id: UBERON:FMA_77280-MA_0000289
def: "The vomeronasal organ (VNO), or Jacobson's organ, is an auxiliary olfactory sense organ that is found in many animals. It was discovered by Ludwig Jacobson in 1813. During embryological development, it forms from the nasal (olfactory) placode, at the anterior edge of the neural plate. It is a chemoreceptor organ which is completely separated from the nasal cavity the majority of the time, being enclosed in a separate bony or cartilaginous capsule which opens into the base of the nasal cavity. It is a tubular crescent shape and split into two pairs, separated by the nasal septum. It is the first processing stage of the accessory olfactory system, after which chemical stimuli go to the accessory olfactory bulb, then to targets in the amygdala and hypothalamus. The vomeronasal organ is mainly used to detect pheromones, chemical messengers that carry information between individuals of the same species, hence is sometimes referred to as the 'sixth sense. ' The VNO has two separate types of neuronal receptors, V1R and V2R, which are seven-transmembrane receptors that are coupled to G proteins. The receptors are distinct from each other and form the large family of receptors in the main olfactory system. Evidence shows that the VNO responds to nonvolatile cues which stimulate the receptor neurons. Information is then transferred to the accessory olfactory bulb as well as other centres of the brain such as the anterior part of the hypothalamus. Its presence in many animals has been widely studied and the importance of the vomeronasal system to the role of reproduction and social behavior (through influence on anterior hypothalamus) has been shown in many studies. Its presence and functionality in humans is widely controversial, though most studies agree the organ regresses during fetal development. [WP,unvetted]." [Wikipedia:Vomeronasal_organ]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Jacobson's organ" EXACT []
synonym: "organ of jacobsen" RELATED []
xref: BTO:0002608
xref: EFO:0001934
xref: EHDAA:7865
xref: EHDAA2:0002211
xref: FMA:77280
xref: GAID:354
xref: HOG:0000665
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Gray51.png/200px-Gray51.png
xref: MA:0000289
xref: XAO:0000272
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002256
name: dorsal horn of spinal cord
alt_id: UBERON:FMA_77405-MA_0001119
def: "the pronounced, dorsolaterally oriented ridge of grey matter in each lateral half of the spinal cord[MP]. the dorsal (more towards the back) grey matter of the spinal cord. It receives several types of sensory information from the body, including light touch, proprioception, and vibration. This information is sent from receptors of the skin, bones, and joints through sensory neurons whose cell bodies lie in the dorsal root ganglion[WP]. The dorsal region of the mature spinal cord contains neurons that process and relay sensory input[GO]." [GO:0021516, MP:0006282, Wikipedia:Posterior_horn_of_spinal_cord]
comment: This class was created automatically from a combination of ontologies
synonym: "dorsal grey column of spinal cord" EXACT []
synonym: "dorsal region of mature spinal cord" EXACT []
synonym: "dorsal region of spinal cord" EXACT []
synonym: "dorsal spinal cord" EXACT []
synonym: "posterior grey column of spinal cord" EXACT []
synonym: "posterior horn of spinal cord" EXACT [Wikipedia:Posterior_horn_of_spinal_cord]
synonym: "spinal cord dorsal horn" EXACT []
xref: FMA:256530
xref: HOG:0001287
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png
xref: MA:0001119
xref: NIF_GrossAnatomy:birnlex_2667
xref: ZFA:0000649
is_a: UBERON:0001948 ! regional part of spinal cord
relationship: part_of UBERON:0002315 ! gray matter of spinal cord
[Term]
id: UBERON:0002257
name: ventral horn of spinal cord
alt_id: UBERON:FMA_77431-MA_0001134
def: "the ventral grey column of the spinal cord." [GO:0021517, MP:0005112]
comment: This class was created automatically from a combination of ontologies
synonym: "anterior grey column of spinal cord" EXACT []
synonym: "spinal cord ventral horn" EXACT []
synonym: "ventral grey column of spinal cord" EXACT []
synonym: "ventral region of spinal cord" EXACT []
synonym: "ventral spinal cord" EXACT []
xref: FMA:256541
xref: HOG:0001288
xref: MA:0001134
xref: NIF_GrossAnatomy:birnlex_2668
xref: ZFA:0000702
is_a: UBERON:0001948 ! regional part of spinal cord
relationship: part_of UBERON:0002315 ! gray matter of spinal cord
[Term]
id: UBERON:0002258
name: dorsal funiculus
alt_id: UBERON:FMA_77461-ZFA_0000501
def: "The portion of the medulla spinalis which lies between the posterolateral sulcus and the posterior median sulcus is named the posterior funiculus. This area includes the dorsal columns (also called the posterior columns) which contains the fasciculus gracilis and, higher in the body, the fasciculus cuneatus, which are separated by a partition of glial cells. Histologically, these two fasciculi are on other sides of the dorsal intermediate sulcus. [WP,unvetted]." [Wikipedia:Dorsal_funiculus]
subset: uberon_slim
synonym: "dorsal funiculus of spinal cord" EXACT []
synonym: "posterior funiculus" EXACT []
synonym: "posterior funiculus of spinal cord" EXACT []
xref: FMA:77461
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png
xref: TAO:0000501
xref: ZFA:0000501
is_a: UBERON:0000122 ! neuron projection bundle
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002259
name: tectal plate
alt_id: UBERON:FMA_77488-MA_0002567
def: "In the brain, the corpora quadrigemina (Latin for 'quadruplet bodies') are the four colliculi—two inferior, two superior—located on the tectum the dorsal aspect of the midbrain. The corpora quadrigemina are reflex centers involving vision and hearing. [WP,unvetted]." [Wikipedia:Corpora_quadrigemina]
comment: TODO - do we need a class 'colliculus' (MP:0009041 absent colliculi)?
subset: uberon_slim
synonym: "colliculi" EXACT [MP:0000899]
synonym: "corpora quadrigemina" EXACT []
synonym: "quadrigeminal plate" EXACT []
xref: BTO:0001710
xref: FMA:77488
xref: GAID:574
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Gray709.png/200px-Gray709.png
xref: MA:0002567
xref: ncithesaurus:Corpora_Quadrigemina
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002314 ! midbrain tectum
[Term]
id: UBERON:0002260
name: ventral root
alt_id: UBERON:FMA_77516-ZFA_0000705
def: "The efferent motor root of a spinal nerve. At its distal end, the ventral root joins with the dorsal root to form a mixed spinal nerve." [Wikipedia:Ventral_root]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:77516
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png
xref: NIF_GrossAnatomy:nlx_anat_20090209
xref: TAO:0000705
xref: ZFA:0000705
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002261
name: dorsal root
alt_id: UBERON:FMA_77517-ZFA_0000652
def: "In anatomy and neurology, the dorsal root (or posterior root) is the afferent sensory root of a spinal nerve. At the distal end of the dorsal root is the dorsal root ganglion, which contains the neuron cell bodies of the nerve fibres conveyed by the root. If the dorsal root of a spinal nerve were severed it would lead to numbness in certain areas of the body. The lateral division of the dorsal root contains lightly myelinated and unmyelinated axons of small diameter. These transmit pain and temperature sensation from the body. These fibers cross through the anterior white commissure to form the Anterior lateral system in the lateral funiculus. The medial division of the dorsal root contains myelinated axons of larger diameter. These transmit information of discriminative touch, pressure, vibration, and conscious proprioception originating from spinal levels C2 through S5. These fibers are pushed in towards the posterior medial sulcus to form the fasciculus gracilis and the fasciculus cuneatus. [WP,unvetted]." [Wikipedia:Dorsal_root]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:77517
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png
xref: NIF_GrossAnatomy:nlx_anat_20090208
xref: TAO:0000652
xref: ZFA:0000652
is_a: UBERON:0002211 ! segment of nerve
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002262
name: celiac ganglion
alt_id: UBERON:FMA_77570-MA_0001158
def: "The celiac ganglia are two large irregularly shaped masses of nerve tissue in the upper abdomen. Part of the sympathetic subdivision of the autonomic nervous system (ANS), the two celiac ganglia are the largest ganglia in the ANS, and they innervate most of the digestive tract. They have the appearance of lymph glands and are placed on either side of the midline in front of the crura of the diaphragm, close to the suprarenal glands (also called adrenal glands). The ganglion on the right side is placed behind the inferior vena cava. They are sometimes referred to as the semilunar ganglia or the solar ganglia. [WP,unvetted]." [Wikipedia:Celiac_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "coeliac ganglion" RELATED []
xref: EHDAA:8946
xref: EHDAA2:0000266
xref: FMA:77570
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/63/Gray848.png/200px-Gray848.png
xref: MA:0001158
xref: ncithesaurus:Coeliac_Ganglion
is_a: UBERON:0001806 ! sympathetic ganglion
[Term]
id: UBERON:0002263
name: lentiform nucleus
alt_id: UBERON:FMA_77615-MA_0000896
def: "The lentiform nucleus or lenticular nucleus comprises the putamen and the globus pallidus within the basal ganglia. It is a large, cone-shaped mass of gray matter just lateral to the internal capsule. [WP,unvetted]." [Wikipedia:Lentiform_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lenticular nucleus" EXACT []
xref: FMA:77615
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fc/Gray741.png/200px-Gray741.png
xref: MA:0000896
xref: ncithesaurus:Lenticular_Nucleus
xref: OpenCyc:Mx4rvvyH2ZwpEbGdrcN5Y29ycA
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002264
name: olfactory bulb
alt_id: UBERON:FMA_77624-MA_0000194-MIAA_0000116-ZFA_0000402
def: "A bulbous anterior projection of the olfactory lobe that is the place of termination of the olfactory nerves and is especially well developed in lower vertebrates (as fishes)[BTO]. Segment of neural tree organ which is continuous with a set of olfactory nerves and an olfactory tract. In most vertebrates, the olfactory bulb is the most rostral (forward) part of the brain. In humans, however, the olfactory bulb is on the inferior (bottom) side of the brain. The olfactory bulb is supported and protected by the cribriform plate which in mammals, separates it from the olfactory epithelium, and which is perforated by olfactory nerve axons. The bulb is divided into two distinct structures, the main olfactory bulb, and the accessory olfactory bulb[WP]." [Wikipedia:Olfactory_bulb]
comment: TODO - check lobe vs bulb
subset: uberon_slim
synonym: "main olfactory bulb" RELATED []
synonym: "olfactory lobe" RELATED [ZFA:0000402]
xref: BTO:0000961
xref: EHDAA2:0001294
xref: FMA:77624
xref: GAID:633
xref: HOG:0000033
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/1543%2CVesalius%27OlfactoryBulbs.jpg/200px-1543%2CVesalius%27OlfactoryBulbs.jpg
xref: MA:0000194
xref: ncithesaurus:Olfactory_Bulb
xref: NIF_GrossAnatomy:birnlex_1137
xref: TAO:0000402
xref: ZFA:0000402
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0005366 ! olfactory lobe
[Term]
id: UBERON:0002265
name: olfactory tract
alt_id: UBERON:FMA_77626-MA_0000975
def: "Tract of brain which is continuous with olfactory bulb and the cerebral cortex." [Wikipedia:Olfactory_tract]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003647
xref: FMA:77626
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png
xref: MA:0000975
xref: ncithesaurus:Olfactory_Tract
xref: NIF_GrossAnatomy:birnlex_1663
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002266
name: anterior olfactory nucleus
alt_id: UBERON:FMA_77628-MA_0000968
def: "The anterior olfactory nucleus (AON; also called the anterior olfactory cortex) is a portion of the forebrain of vertebrates. [WP,unvetted]." [Wikipedia:Anterior_olfactory_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "retrobulbar nucleus [a8]" EXACT []
xref: BTO:0003649
xref: FMA:77628
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Human_brainstem_anterior_view_2_description.JPG/200px-Human_brainstem_anterior_view_2_description.JPG
xref: MA:0000968
xref: ncithesaurus:Anterior_Olfactory_Nucleus
xref: NIF_GrossAnatomy:birnlex_1085
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002267
name: laterodorsal tegmental nucleus
alt_id: UBERON:FMA_77654-MA_0001016
def: "The laterodorsal tegmental nucleus (or lateroposterior tegmental nucleus) is a nucleus situated in the brainstem, spanning the midbrain tegmentum and the pontine tegmentum. [WP,unvetted]." [Wikipedia:Laterodorsal_tegmental_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateroposterior tegmental nucleus" EXACT []
xref: BTO:0004016
xref: FMA:77654
xref: MA:0001016
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002268
name: olfactory organ
alt_id: UBERON:FMA_77659-XAO_0000273
comment: note - fma general anatomical term. xao has no subtypes (but Johnstons organ develops from this)
subset: functional_classification
xref: BTO:0001772
xref: FMA:77659
xref: HOG:0000287
xref: XAO:0000273
is_a: UBERON:0000020 ! implied link automatically realized ! sense organ
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
relationship: develops_from UBERON:0003050 ! olfactory placode
relationship: part_of UBERON:0001016 ! nervous system
relationship: part_of UBERON:0005725 ! olfactory system
[Term]
id: UBERON:0002269
name: pupillary membrane
alt_id: UBERON:FMA_77663-MA_0001293
def: "Fetal membrane that crosses the pupil." [UBERON:cjm]
comment: This class was created automatically from a combination of ontologies
xref: FMA:77663
xref: MA:0001293
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005630 ! fetal membrane
relationship: part_of UBERON:0001771 ! pupil
[Term]
id: UBERON:0002270
name: hyaloid artery
alt_id: UBERON:FMA_77670-ZFA_0005045
def: "The hyaloid artery is a branch of the ophthalmic artery, which is itself a branch of the internal carotid artery. It is contained within the optic stalk of the eye and extends from the optic disc through the vitreous humor to the lens. Usually fully regressed before birth, its purpose is to supply nutrient to the developing lens in the growing fetus. During the tenth week of development in humans (time varies depending on species), the lens grows independent of a blood supply and the hyaloid artery usually regresses. Its proximal portion remains as the central artery of the retina. Regression of the hyaloid artery leaves a clear central zone through the vitreous called the hyaloid canal or Cloquet's canal. Cloquet's canal is named after the man who first described it, French physician Jules Germain Cloquet (1790b1883). Occasionally the artery may not fully regress, resulting in the condition persistent hyaloid artery. More commonly, small remnants of the artery may remain. Free remnants can sometimes be seen as \"floaters\". An anterior remnant of the hyaloid artery can be seen in some people as Mittendorf's dot, a small pinpoint-like scar on the posterior surface of the lens. A posterior remnant may be seen where the artery left the optic disc, and is known as Bergmeister's papilla." [Wikipedia:Hyaloid_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EMAPA:19242
xref: FMA:77670
xref: HOG:0001478
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Schematic_diagram_of_the_human_eye_en.svg/200px-Schematic_diagram_of_the_human_eye_en.svg.png
xref: TAO:0005045
xref: ZFA:0005045
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003499 ! implied link automatically realized ! brain blood vessel
is_a: UBERON:0005492 ! hyaloid vessel
relationship: part_of UBERON:0003098 ! optic stalk
relationship: part_of UBERON:0006010 ! hyaloid canal
[Term]
id: UBERON:0002271
name: periventricular zone of hypothalamus
alt_id: UBERON:FMA_77682-MA_0000846
comment: This class was created automatically from a combination of ontologies
synonym: "hypothalamus periventricular zone" EXACT []
xref: FMA:77682
xref: HOG:0000623
xref: MA:0000846
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002272
name: medial zone of hypothalamus
alt_id: UBERON:FMA_77683-MA_0000837
comment: This class was created automatically from a combination of ontologies
synonym: "hypothalamus medial zone" EXACT []
xref: FMA:77683
xref: MA:0000837
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002273
name: lateral zone of hypothalamus
alt_id: UBERON:FMA_77684-MA_0000833
comment: This class was created automatically from a combination of ontologies
synonym: "hypothalamus lateral zone" EXACT []
xref: FMA:77684
xref: MA:0000833
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002274
name: perifornical nucleus
alt_id: UBERON:FMA_77688-MA_0000836
comment: This class was created automatically from a combination of ontologies
xref: FMA:77688
xref: MA:0000836
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus
[Term]
id: UBERON:0002275
name: reticular formation
alt_id: UBERON:FMA_77719-ZFA_0000421
comment: note that this class denotes the generic structure, and not a specific one such as medullary or pontine reticular formation
subset: uberon_slim
xref: FMA:77719
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Gray701.png/200px-Gray701.png
is_a: UBERON:0000073 ! regional part of nervous system
[Term]
id: UBERON:0002276
name: lamina of spiral limbus
alt_id: UBERON:FMA_77721-MA_0001191
def: "The osseous spiral lamina consists of two plates of bone, and between these are the canals for the transmission of the filaments of the acoustic nerve. On the upper plate of that part of the lamina which is outside the vestibular membrane, the periosteum is thickened to form the limbus spiralis (or limbus laminæ spiralis), this ends externally in a concavity, the sulcus spiralis internus, which represents, on section, the form of the letter C. [WP,unvetted]." [Wikipedia:Limbus_laminae_spiralis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "limbus lamina spiralis" EXACT []
synonym: "limbus laminae spiralis" EXACT []
synonym: "spiral limbus lamina" EXACT []
xref: FMA:77721
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray930.png/200px-Gray930.png
xref: MA:0001191
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002277
name: spiral sulcus
alt_id: UBERON:FMA_77744-MA_0001195
comment: This class was created automatically from a combination of ontologies
synonym: "sulcus spiralis" EXACT []
xref: FMA:77744
xref: MA:0001195
is_a: UBERON:0000093 ! sulcus
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002278
name: perilymphatic space
alt_id: UBERON:FMA_77745-MA_0000248
comment: This class was created automatically from a combination of ontologies
synonym: "perilymphatic channel" EXACT []
xref: BTO:0002083
xref: FMA:77745
xref: MA:0000248
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0002279
name: vestibular aqueduct
alt_id: UBERON:FMA_77821-MA_0001186
def: "At the hinder part of the medial wall of the vestibule is the orifice of the vestibular aqueduct, which extends to the posterior surface of the petrous portion of the temporal bone. It transmits a small vein, and contains a tubular prolongation of the membranous labyrinth, the ductus endolymphaticus, which ends in a cul-de-sac between the layers of the dura mater within the cranial cavity. [WP,unvetted]." [Wikipedia:Vestibular_aqueduct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:77821
xref: GAID:885
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray921.png/200px-Gray921.png
xref: MA:0001186
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002280
name: otolith
alt_id: UBERON:FMA_77826-ZFA_0001617
def: "Acellular structure composed of calcium carbonate located in the otolith organ." [Wikipedia:Otolith, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "immature otolith" RELATED []
synonym: "immature otoliths" RELATED []
synonym: "otoconium" EXACT []
synonym: "otoliths" EXACT PLURAL []
synonym: "statoconium" EXACT []
synonym: "statolith" EXACT []
xref: FMA:77826
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Bigotolith.jpg/200px-Bigotolith.jpg
xref: ncithesaurus:Otolith
xref: TAO:0001621
xref: ZFA:0001617
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0002281
name: vestibular membrane of cochlear duct
alt_id: UBERON:FMA_77829-MA_0001200
def: "a membrane inside the cochlea of the inner ear. It separates scala media from scala vestibuli. Together with the basilar membrane it creates a compartment in the cochlea filled with endolymph, which is important for the function of the organ of Corti. It primarily functions as a diffusion barrier, allowing nutrients to travel from the perilymph to the endolymph of the membranous labyrinth. Histologically, the membrane is composed of two layers of flattened epithelium, separated by a basal lamina. Its structure suggests that its function is transport of fluid and electrolytes." [Wikipedia:Reissner's_membrane]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Reissner's membrane" EXACT []
synonym: "superior wall of cochlear duct" EXACT []
synonym: "vestibular membrane" EXACT []
synonym: "vestibular membrane of reissner" EXACT []
xref: FMA:77829
xref: MA:0001200
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002282
name: stria vascularis of cochlear duct
alt_id: UBERON:FMA_77832-MA_0001198
def: "The upper portion of the spiral ligament contains numerous capillary loops and small blood vessels, and is termed the stria vascularis. It produces endolymph for the scala media, one of the three fluid-filled compartments of the cochlea. [WP,unvetted]." [Wikipedia:Stria_vascularis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "stria vascularis" EXACT []
synonym: "stria vascularis of cochlea" EXACT []
xref: BTO:0001819
xref: EFO:0001644
xref: FMA:77832
xref: GAID:875
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Cochlea-crosssection.png/200px-Cochlea-crosssection.png
xref: MA:0001198
xref: NIF_GrossAnatomy:birnlex_2525
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002283
name: nail matrix
alt_id: UBERON:FMA_77856-MA_0002707
def: "Portion of tissue (or germinal matrix) upon which the nail rests, the part of the nail bed that extends beneath the nail root and contains nerves, lymph and blood vessels. The matrix is responsible for the production of the cells that become the nail plate. The width and thickness of the nail plate is determined by the size, length, and thickness of the matrix, while the shape of the fingertip itself determines if the nail plate is flat, arched, or hooked. The matrix will continue to grow as long as it receives nutrition and remains in a healthy condition. As new nail plate cells are incubated, they emerge from the matrix round and white to push older nail plate cells forward; and in this way yet older cells become compressed, flat, and translucent, making the pink colour of the capillaries in the nail bed below visible[WP]." [UBERON:cjm]
subset: uberon_slim
synonym: "keratogenous membrane" EXACT [Wikipedia:Nail_(anatomy)#Parts_of_the_nail]
synonym: "matrix unguis" EXACT [Wikipedia:Nail_(anatomy)#Parts_of_the_nail]
synonym: "onychostroma" EXACT [Wikipedia:Nail_(anatomy)#Parts_of_the_nail]
xref: FMA:77856
xref: MA:0002707
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0001705 ! nail
[Term]
id: UBERON:0002284
name: hyponychium
alt_id: UBERON:FMA_77860-MA_0002705
def: "Epithelium located beneath the nail plate at the junction between the free edge and the skin of the fingertip. It forms a seal that protects the nail bed." [Wikipedia:Hyponychium]
subset: uberon_slim
xref: FMA:77860
xref: MA:0002705
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: adjacent_to UBERON:0001705 ! nail
relationship: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0002285
name: lateral ventricle
alt_id: UBERON:FMA_78448-MA_0000192
def: "The two lateral ventricles are a cavity in each of the cerebral hemispheres derived from the cavity of the embryonic neural tube. They are separated from each other by the septum pellucidum, and each communicates with the third ventricle by the foramen of Monro, through which also the choroid plexuses of the lateral ventricles become continuous with that of the third ventricle[GO]. The lateral ventricles are part of the ventricular system of the brain. Classified as part of the telencephalon, they are the largest of the ventricles. The lateral ventricles connect to the central third ventricle through the interventricular foramina of Monro[WP]." [GO:0021670, Wikipedia:Lateral_ventricle]
comment: Paired structure
subset: uberon_slim
synonym: "telencephalic ventricle" EXACT [HOG:0000643, ZFA:0000696]
synonym: "telencephalon lateral ventricle" EXACT [EHDAA2:0001984]
xref: BTO:0000879
xref: EFO:0001961
xref: EHDAA:3502
xref: EHDAA:6576
xref: EHDAA2:0001984
xref: FMA:78448
xref: GAID:611
xref: HOG:0000643
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png
xref: MA:0000192
xref: ncithesaurus:Lateral_Ventricle
xref: NIF_GrossAnatomy:birnlex_1263
xref: OpenCyc:Mx4rvYsFdZwpEbGdrcN5Y29ycA
xref: ZFA:0000696
is_a: UBERON:0004086 ! brain ventricle
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0002286
name: third ventricle
alt_id: UBERON:FMA_78454-MA_0000182-ZFA_0000161
def: "Part of the ventricular system of the brain, forming a single large cavity in the midline of the diencephalon; it is continuous with the lateral ventricles through the interventricular foramen and the fourth ventricle through the cerebral aqueduct (Maryann Martone). A narrow cleft inferior to the corpus callosum, within the diencephalon, between the paired thalami. Its floor is formed by the HYPOTHALAMUS, its anterior wall by the lamina terminalis, and its roof by EPENDYMA. It communicates with the FOURTH VENTRICLE by the CEREBRAL AQUEDUCT, and with the LATERAL VENTRICLES by the interventricular foramina[GAID]." [GAID:614, NIF_GrossAnatomy:birnlex_714, Wikipedia:Third_ventricle]
comment: Singular structure
subset: uberon_slim
synonym: "3rd ventricle" EXACT []
synonym: "diencephalic ventricle" RELATED []
synonym: "diencephalic vesicle" RELATED []
xref: EHDAA2:0000084
xref: FMA:78454
xref: GAID:614
xref: HOG:0000007
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png
xref: MA:0000182
xref: ncithesaurus:Third_Ventricle_of_Brain
xref: NIF_GrossAnatomy:birnlex_714
xref: OpenCyc:Mx4rvakhcJwpEbGdrcN5Y29ycA
xref: TAO:0000161
xref: ZFA:0000161
is_a: UBERON:0004086 ! brain ventricle
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0002287
name: optic recess of third ventricle
alt_id: UBERON:FMA_78455-ZFA_0000049
def: "At the junction of the floor and anterior wall of the third ventricle, immediately above the optic chiasma, the ventricle presents a small angular recess or diverticulum, the optic recess (or supraoptic recess). [WP,unvetted]." [Wikipedia:Optic_recess]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "optic recess" EXACT []
synonym: "preoptic recess" EXACT []
synonym: "supraoptic recess" EXACT []
xref: EHDAA:1343
xref: EHDAA:1973
xref: EHDAA:2649
xref: EHDAA:3478
xref: EHDAA2:0001317
xref: FMA:78455
xref: HOG:0000595
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray721.png/200px-Gray721.png
xref: TAO:0000049
xref: ZFA:0000049
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0002286 ! third ventricle
[Term]
id: UBERON:0002288
name: choroid plexus of third ventricle
alt_id: UBERON:FMA_78462-MA_0000879
def: "A choroid plexus that is part of a third ventricle [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "3rd ventricle choroid plexus" RELATED []
synonym: "chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic]
synonym: "chorioid plexus of third ventricle" EXACT []
synonym: "third ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "third ventricle choroid plexus" EXACT []
xref: FMA:78462
xref: HOG:0001374
xref: MA:0000879
xref: ZFA:0001444
is_a: UBERON:0001886 ! choroid plexus
relationship: part_of UBERON:0002286
intersection_of: UBERON:0001886 ! choroid plexus
intersection_of: part_of UBERON:0002286 ! third ventricle
relationship: part_of UBERON:0002286 ! third ventricle
[Term]
id: UBERON:0002289
name: cerebral aqueduct
alt_id: UBERON:0005684
alt_id: UBERON:FMA_78467-MA_0000208
def: "The mesencephalic duct, also known as the aqueductus mesencephali, aqueduct of Sylvius or the cerebral aqueduct, contains cerebrospinal fluid (CSF), is within the mesencephalon (or midbrain) and connects the third ventricle in the diencephalon to the fourth ventricle, which is between the pons and cerebellum. [WP,unvetted]." [Wikipedia:Cerebral_aqueduct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "aqueduct (sylvius)" EXACT []
synonym: "aqueduct of midbrain" EXACT []
synonym: "aqueduct of sylvius" EXACT []
synonym: "cerebral aquaduct" EXACT [ZFA:0000159]
synonym: "cerebral aqueduct of sylvius" EXACT []
synonym: "midbrain cerebral aqueduct" EXACT [EHDAA2:0001163]
synonym: "tectal ventricle" EXACT [ZFA:0000159]
xref: EHDAA:3696
xref: EHDAA2:0001163
xref: FMA:78467
xref: GAID:583
xref: HOG:0000832
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png
xref: MA:0000208
xref: ncithesaurus:Aqueduct_of_Sylvius
xref: NIF_GrossAnatomy:birnlex_1261
xref: ZFA:0000159
is_a: UBERON:0004086 ! brain ventricle
relationship: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0002290
name: choroid plexus of fourth ventricle
alt_id: UBERON:FMA_78492-MA_0000983
def: "A choroid plexus that is part of a fourth ventricle [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "4th ventricle choroid plexus" RELATED []
synonym: "chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic]
synonym: "chorioid plexus of fourth ventricle" EXACT []
synonym: "fourth ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "fourth ventricle choroid plexus" EXACT []
xref: FMA:78492
xref: HOG:0001375
xref: MA:0000983
xref: ZFA:0001446
is_a: UBERON:0001886 ! choroid plexus
relationship: part_of UBERON:0002422
intersection_of: UBERON:0001886 ! choroid plexus
intersection_of: part_of UBERON:0002422 ! fourth ventricle
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002291
name: central canal
alt_id: UBERON:0002220
alt_id: UBERON:FMA_75364-MA_0001117
alt_id: UBERON:FMA_78497-ZFA_0000938
def: "A cerebrospinal fluid-filled space that runs longitudinally through the length of the entire spinal cord. The central canal is contiguous with the ventricular system of the brain. The central canal represents the adult remainder of the neural tube." [Wikipedia:Central_canal]
comment: previously mapped to FMA:75364
subset: uberon_slim
synonym: "central canal of spinal cord" EXACT []
synonym: "neural lumen" RELATED []
synonym: "spinal cord central canal" EXACT []
xref: FMA:78497
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Medulla_spinalis_-_Section_-_English.svg/200px-Medulla_spinalis_-_Section_-_English.svg.png
xref: MA:0001117
xref: ncithesaurus:Central_Canal
xref: NIF_GrossAnatomy:birnlex_1409
xref: TAO:0000938
xref: ZFA:0000938
is_a: UBERON:0002553 ! anatomical cavity
relationship: develops_from UBERON:0001049 ! neural tube
relationship: has_part UBERON:0001359 ! cerebrospinal fluid
relationship: part_of UBERON:0005281 ! ventricular system of central nervous system
relationship: surrounded_by UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002292
name: joint of head of rib
alt_id: UBERON:FMA_7951-MA_0001510
def: "The costovertebral joints are the articulations that connect the heads of the ribs with the bodies of the thoracic vertebrae. Joining of ribs to the vertebrae occurs at two places, the head and the tubercle of the rib. Two convex facets from the head attach to two adjacent vertebrae. This forms a trochoid joint, which is strengthened by the ligament of the head and the intercapital ligament. Articulation of the tubercle is to the transverse process of the adjacent vertebrae. This articulation is reinforced by the dorsal costotransverse ligament. [WP,unvetted]." [Wikipedia:Costovertebral_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "costal head joint" EXACT []
synonym: "costocorporeal joint" EXACT []
synonym: "costovertebral joint" EXACT []
synonym: "head of rib joint" EXACT [OBOL:automatic]
synonym: "joint of costal head" EXACT []
synonym: "joint of rib head" EXACT [OBOL:automatic]
synonym: "rib head joint" EXACT [OBOL:automatic]
xref: FMA:7951
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c7/Gray312.png/200px-Gray312.png
xref: MA:0001510
xref: ncithesaurus:Costovertebral_Joint
is_a: UBERON:0002001 ! joint of rib
is_a: UBERON:0002217 ! synovial joint
relationship: part_of UBERON:0002230
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002230 ! head of rib
[Term]
id: UBERON:0002293
name: costochondral joint
alt_id: UBERON:FMA_7956-MA_0001509
def: "." [Wikipedia:Costochondral_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "articulatio costochondralis" EXACT []
synonym: "chondrocostal synchondrosis" EXACT []
synonym: "costochondral junction" EXACT []
synonym: "costochondral synchondrosis" EXACT []
xref: FMA:7956
xref: MA:0001509
xref: ncithesaurus:Costochondral_Joint
xref: OpenCyc:Mx4rvfy27JwpEbGdrcN5Y29ycA
is_a: UBERON:0002001 ! joint of rib
is_a: UBERON:0002215 ! synchondrosis
[Term]
id: UBERON:0002294
name: biliary system
alt_id: UBERON:FMA_79646-MA_0001273
def: "Anatomical system that consists of the organs and ducts (bile ducts, gallbladder, and associated structures) that are involved in the production and transportation of bile." [Wikipedia:Biliary_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "biliary apparatus" EXACT []
xref: FMA:79646
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: part_of UBERON:0002423 ! hepatobiliary system
[Term]
id: UBERON:0002295
name: scala media
alt_id: UBERON:FMA_79789-MA_0002458
def: "An endolymph filled cavity inside the cochlea, located in between the scala tympani and the scala vestibuli, separated by the basilar membrane and Reissner's membrane (the vestibular membrane) respectively. Scala media houses the organ of Corti. [WP,unvetted]." [Wikipedia:Scala_media]
comment: TODO: check cochlear duct vs cochlear aqueduct vs scala media
subset: uberon_slim
synonym: "cochlear duct" RELATED []
xref: EHDAA2:0000262
xref: FMA:79789
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Gray928.png/200px-Gray928.png
xref: MA:0002458
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001844 ! cochlea
[Term]
id: UBERON:0002296
name: dorsal mesentery
alt_id: UBERON:FMA_79795-ZFA_0005130
def: "The mesentery that originates from the dorsal side of the peritoneal cavity." [Wikipedia:Dorsal_mesentery, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:3019
xref: EHDAA:3033
xref: EHDAA:3921
xref: EHDAA:3934
xref: EHDAA:3957
xref: EHDAA:3971
xref: FMA:79795
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Gray985.png/200px-Gray985.png
xref: TAO:0005130
xref: ZFA:0005130
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002095 ! mesentery
[Term]
id: UBERON:0002297
name: cerumen
alt_id: UBERON:FMA_79869-MA_0002506
def: "." [Wikipedia:Cerumen]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ear wax" EXACT []
xref: ENVO:02000028
xref: FMA:79869
xref: GAID:1158
xref: MA:0002506
xref: ncithesaurus:Cerumen
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0002298
name: brainstem
alt_id: UBERON:FMA_79876-MA_0000169
def: "The brainstem (or brain stem) is the lower part of the brain, adjoining and structurally continuous with the spinal cord. The brain stem provides the main motor and sensory innervation to the face and neck via the cranial nerves. Though small, this is an extremely important part of the brain as the nerve connections of the motor and sensory systems from the main part of the brain to the rest of the body pass through the brain stem. This includes the corticospinal tract (motor), the posterior column-medial lemniscus pathway (fine touch, vibration sensation and proprioception) and the spinothalamic tract (pain, temperature, itch and crude touch). The brain stem also plays an important role in the regulation of cardiac and respiratory function. It also regulates the central nervous system, and is pivotal in maintaining consciousness and regulating the sleep cycle. Some taxonomies describe the brain stem as the medulla oblongata (myelencephalon) and pons (part of metencephalon), whereas others include the midbrain (mesencephalon). [WP,unvetted]." [Wikipedia:Brainstem]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "brain stem" RELATED []
xref: BTO:0000146
xref: FMA:79876
xref: HOG:0001457
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray719.png/200px-Gray719.png
xref: MA:0000169
xref: NIF_GrossAnatomy:birnlex_1565
xref: ZFA:0001707
is_a: UBERON:0002616 ! regional part of brain
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002299
name: alveolus of lung
alt_id: UBERON:FMA_82493-MA_0000420
def: "Spherical outcropping of the respiratory bronchioles and primary site of gas exchange with the blood. Alveoli are particular to mammalian lungs. Different structures are involved in gas exchange in other vertebrates[WP]." [Wikipedia:Pulmonary_alveolus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "alveolus" RELATED []
synonym: "lung alveolus" EXACT []
synonym: "pulmonary alveolus" EXACT []
xref: BTO:0000060
xref: FMA:7318
xref: GAID:349
xref: HOG:0001445
xref: MA:0000420
is_a: UBERON:0003215 ! alveolus
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002048
intersection_of: UBERON:0003215 ! alveolus
intersection_of: part_of UBERON:0002048 ! lung
relationship: part_of UBERON:0002048 ! lung
relationship: part_of UBERON:0002169 ! alveolar sac
[Term]
id: UBERON:0002300
name: ventricle
alt_id: UBERON:FMA_82553-MA_0000818
def: "A chamber of an organ with cavitated organ parts. Examples: right ventricle of heart, lateral ventricle of brain." [Wikipedia:Ventricle]
comment: Note that this term is used in the general sense - there are specific subclasses for brain ventricle and heart ventricle. FMA Ventricle is general anatomical term. EFO ventricle is part_of heart. See also chamber.
subset: uberon_slim
xref: EHDAA:1912
xref: EHDAA2:0002178
xref: FMA:82553
xref: galen:Ventricle
xref: MAT:0000497
is_a: UBERON:0000061 ! anatomical structure
relationship: has_part UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0002301
name: layer of neocortex
alt_id: UBERON:FMA_83138-MA_0000186
comment: This class was created automatically from a combination of ontologies
synonym: "cerebral cortex layer" RELATED [MA:0000186]
synonym: "neocortex layer" EXACT []
xref: FMA:83138
xref: MA:0000186
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0002302
name: myocardium of atrium
alt_id: UBERON:FMA_83509-MA_0000081-ZFA_0001374
def: "A myocardium that is part of a cardiac atrium [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "atrial myocardium" EXACT []
synonym: "atrium myocardium" EXACT []
synonym: "atrium of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "atrium of heart heart muscle" EXACT [OBOL:automatic]
synonym: "atrium of heart heart myocardium" EXACT [OBOL:automatic]
synonym: "atrium of heart muscle of heart" EXACT [OBOL:automatic]
synonym: "atrium of heart myocardium" EXACT [OBOL:automatic]
synonym: "Cardiac atria cardiac muscle" EXACT [OBOL:automatic]
synonym: "Cardiac atria heart muscle" EXACT [OBOL:automatic]
synonym: "Cardiac atria heart myocardium" EXACT [OBOL:automatic]
synonym: "Cardiac atria muscle of heart" EXACT [OBOL:automatic]
synonym: "Cardiac atria myocardium" EXACT [OBOL:automatic]
synonym: "cardiac atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac atrium heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac atrium heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac atrium muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac atrium myocardium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle of Cardiac atria" EXACT [OBOL:automatic]
synonym: "cardiac muscle of cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of heart atrium" EXACT [OBOL:automatic]
synonym: "heart atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart atrium heart muscle" EXACT [OBOL:automatic]
synonym: "heart atrium heart myocardium" EXACT [OBOL:automatic]
synonym: "heart atrium muscle of heart" EXACT [OBOL:automatic]
synonym: "heart atrium myocardium" EXACT [OBOL:automatic]
synonym: "heart muscle of atrium of heart" EXACT [OBOL:automatic]
synonym: "heart muscle of Cardiac atria" EXACT [OBOL:automatic]
synonym: "heart muscle of cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart muscle of heart atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium of atrium of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium of Cardiac atria" EXACT [OBOL:automatic]
synonym: "heart myocardium of cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium of heart atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart of atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart of Cardiac atria" EXACT [OBOL:automatic]
synonym: "muscle of heart of cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart of heart atrium" EXACT [OBOL:automatic]
synonym: "myocardium of atrium of heart" EXACT [OBOL:automatic]
synonym: "myocardium of Cardiac atria" EXACT [OBOL:automatic]
synonym: "myocardium of cardiac atrium" EXACT [OBOL:automatic]
synonym: "myocardium of heart atrium" EXACT [OBOL:automatic]
xref: FMA:83509
xref: HOG:0000602
xref: MA:0000081
xref: TAO:0001374
xref: ZFA:0001374
is_a: UBERON:0002349 ! myocardium
relationship: part_of UBERON:0002081
intersection_of: UBERON:0002349 ! myocardium
intersection_of: part_of UBERON:0002081 ! cardiac atrium
[Term]
id: UBERON:0002303
name: juxtaglomerular apparatus
alt_id: UBERON:FMA_83599-MA_0002546
def: "An anatomical structure which consists of juxtaglomerular cells, extraglomerular mesangial cells and the macula densa. The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]. a microscopic structure in the kidney, which regulates the function of each nephron. The juxtaglomerular apparatus is named for its proximity to the glomerulus: it is found between the vascular pole of the renal corpuscle and the returning distal convoluted tubule of the same nephron. This location is critical to its function in regulating renal blood flow and glomerular filtration rate. The three cellular components of the apparatus are the macula densa, extraglomerular mesangial cells, and juxtaglomerular cells (also known as granular cells)[WP]." [GO:0072206, Wikipedia:Juxtaglomerular_apparatus]
subset: uberon_slim
synonym: "juxtaglomerular complex" EXACT []
xref: EMAPA:30449
xref: FMA:83599
xref: GAID:432
xref: MA:0002546
xref: ncithesaurus:Juxtaglomerular_Apparatus
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0002304
name: layer of dentate gyrus
alt_id: UBERON:FMA_83678-MA_0002429
comment: This class was created automatically from a combination of ontologies
synonym: "dentate gyrus layer" EXACT []
xref: FMA:83678
xref: MA:0002429
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation
[Term]
id: UBERON:0002305
name: layer of hippocampus
alt_id: UBERON:FMA_83679-MA_0002427
def: "the layers of the laminar structure of the hippocampus." [MP:0000813]
comment: TODO - check NIF xref
synonym: "Ammon's horn cell layer" EXACT [OBOL:automatic]
synonym: "Ammon's horn layer of cells" EXACT [OBOL:automatic]
synonym: "cell layer of Ammon's horn" EXACT [OBOL:automatic]
synonym: "cell layer of hippocampus" EXACT [OBOL:automatic]
synonym: "cell layer of hippocampus major" EXACT [OBOL:automatic]
synonym: "cell layer of hippocampus proper" EXACT [OBOL:automatic]
synonym: "cytoarchitectural fields of hippocampal formation" EXACT [NIF_GrossAnatomy:birnlex_1192]
synonym: "hippocampus cell layer" EXACT [OBOL:automatic]
synonym: "hippocampus layer" EXACT []
synonym: "hippocampus layer of cells" EXACT [OBOL:automatic]
synonym: "hippocampus major cell layer" EXACT [OBOL:automatic]
synonym: "hippocampus major layer of cells" EXACT [OBOL:automatic]
synonym: "hippocampus proper cell layer" EXACT [OBOL:automatic]
synonym: "hippocampus proper layer of cells" EXACT [OBOL:automatic]
synonym: "layer of cells of Ammon's horn" EXACT [OBOL:automatic]
synonym: "layer of cells of hippocampus" EXACT [OBOL:automatic]
synonym: "layer of cells of hippocampus major" EXACT [OBOL:automatic]
synonym: "layer of cells of hippocampus proper" EXACT [OBOL:automatic]
xref: FMA:83679
xref: MA:0002427
xref: NIF_GrossAnatomy:birnlex_1192
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000119 ! implied link automatically realized ! cell layer
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0001954
intersection_of: UBERON:0000119 ! cell layer
intersection_of: part_of UBERON:0001954 ! hippocampus
relationship: part_of UBERON:0001954 ! hippocampus
[Term]
id: UBERON:0002306
name: nasal mucus
alt_id: UBERON:FMA_83688-MA_0002535
def: "In the respiratory system mucus aids in the protection of the lungs by trapping foreign particles that enter it, particularly through the nose, during normal breathing. Phlegm is a specialized term for mucus that is restricted to the respiratory tract, while the term mucus more globally describes secretions of the nasal passages as well." [Wikipedia:Nasal_mucus#Respiratory_system]
comment: TODO - split nasal vs respiratory tract?
subset: uberon_slim
synonym: "respiratory mucus" EXACT [BTO:0003603]
xref: BTO:0003603
xref: FMA:83688
xref: MA:0002535
xref: ncithesaurus:Nasal_Mucus
is_a: UBERON:0000912 ! mucus
relationship: secreted_by UBERON:0004785 ! respiratory system mucosa
[Term]
id: UBERON:0002307
name: choroid plexus of lateral ventricle
alt_id: UBERON:FMA_83711-MA_0000961
def: "A choroid plexus that is part of a lateral ventricle [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic]
synonym: "chorioid plexus of lateral ventricle" EXACT []
synonym: "lateral ventricle chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "lateral ventricle choroid plexus" EXACT []
xref: FMA:83711
xref: HOG:0001376
xref: MA:0000961
xref: ZFA:0001447
is_a: UBERON:0001886 ! choroid plexus
relationship: part_of UBERON:0002285
intersection_of: UBERON:0001886 ! choroid plexus
intersection_of: part_of UBERON:0002285 ! lateral ventricle
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0002308
name: nucleus of brain
alt_id: UBERON:FMA_83840-MA_0000811
def: "Nucleus of neuraxis which is located within the brain. Example: pontobulbar nucleus, globose nucleus[FMA]. brain structure consisting of a relatively compact cluster of neurons. It is one of the two most common forms of nerve cell organization, the other being layered structures such as the cerebral cortex or cerebellar cortex. In anatomical sections, a nucleus shows up as a region of gray matter, often bordered by white matter. The vertebrate brain contains hundreds of distinguishable nuclei, varying widely in shape and size. A nucleus may itself have a complex internal structure, with multiple types of neurons arranged in clumps (subnuclei) or layers.[Wikipedia]" [FMA:83840, Wikipedia:Nucleus_(neuroanatomy)]
comment: We considered merging with 'neural nucleus'
synonym: "brain nucleus" EXACT []
xref: FMA:83840
xref: MA:0000811
xref: ncithesaurus:Brain_Nucleus
is_a: UBERON:0000125 ! implied link automatically realized ! neural nucleus
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0000955
intersection_of: UBERON:0000125 ! neural nucleus
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002309
name: medial longitudinal fasciculus
alt_id: UBERON:FMA_83846-ZFA_0000543
def: "The medial longitudinal fasciculus (MLF) is a pair of crossed fiber tracts, one on each side of the brainstem. These bundles of axons are situated near the midline of the brainstem and are composed of both ascending and descending fibers that arise from a number of sources and terminate in different areas. [WP,unvetted]." [Wikipedia:Medial_longitudinal_fasciculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003951
xref: FMA:83846
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Gray711.png/200px-Gray711.png
xref: TAO:0000543
xref: ZFA:0000543
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0000481 ! multi-tissue structure
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002310
name: fimbria of hippocampus
alt_id: UBERON:FMA_83866-MA_0000949
def: "A prominent band of white matter along the medial edge of the hippocampus[WP]." [Wikipedia:Fimbria_of_hippocampus]
comment: This class was created automatically from a combination of ontologies
synonym: "fimbria hippocampus" EXACT []
synonym: "hippocampal fimbria" EXACT [MP:0009324]
synonym: "hippocampus fimbria" EXACT []
synonym: "neuraxis fimbria" EXACT []
xref: FMA:83866
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray749.png/200px-Gray749.png
xref: MA:0000949
xref: NIF_GrossAnatomy:birnlex_1502
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001954 ! hippocampus
[Term]
id: UBERON:0002311
name: nodulus of cerebellum
alt_id: UBERON:FMA_83882-MA_0001007
is_obsolete: true
replaced_by: UBERON:0004083
[Term]
id: UBERON:0002312
name: pyramis of vermis of cerebellum
alt_id: UBERON:FMA_83888-MA_0001005
comment: This class was created automatically from a combination of ontologies
synonym: "cerebellum lobule VIII" EXACT []
synonym: "neuraxis pyramis" EXACT []
synonym: "pyramus" RELATED []
xref: FMA:83888
xref: MA:0001005
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002313
name: pyramidal layer of hippocampus
alt_id: UBERON:0005369
alt_id: UBERON:FMA_83895-MA_0000956
comment: This class was created automatically from a combination of ontologies
synonym: "hippocampus pyramidal layer" EXACT []
synonym: "hippocampus stratum pyramidale" RELATED []
synonym: "stratum pyramidale hippocampi" EXACT [NIF_GrossAnatomy:birnlex_1444]
xref: FMA:83895
xref: MA:0000956
xref: NIF_GrossAnatomy:birnlex_1444
is_a: UBERON:0002305 ! layer of hippocampus
[Term]
id: UBERON:0002314
name: midbrain tectum
alt_id: UBERON:FMA_83902-MA_0000211
def: "The tectum is a region of the brain, specifically the dorsal part of the mesencephalon (midbrain). This is contrasted with the tegmentum, which refers to the region ventral to the ventricular system. It is derived in embryonic development from the alar plate of the neural tube. [WP,unvetted]." [Wikipedia:Midbrain_tectum]
comment: TODO - check zebrafish optic tectum
subset: uberon_slim
synonym: "neuraxis tectum" EXACT []
synonym: "optic tectum" RELATED [ZFA:0000445]
synonym: "tectum" EXACT []
xref: EFO:0000920
xref: FMA:83902
xref: GO:0043676
xref: HOG:0001388
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray685.png/200px-Gray685.png
xref: MA:0000211
xref: MAT:0000451
xref: NIF_GrossAnatomy:birnlex_1032
xref: XAO:0003226
xref: ZFA:0000445
is_a: UBERON:0002950 ! regional part of midbrain
is_a: UBERON:0002966 ! implied link automatically realized ! regional part of midbrain tectum
relationship: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0002315
name: gray matter of spinal cord
alt_id: UBERON:FMA_83926-MA_0000002
def: "the ridge-shaped grey matter of the spinal cord that extends longitudunally through the center of each half of the spinal cord, and are largely or entirely composed of nerve cell bodies and their dendrites and some supportive tissue." [MP:0008503]
comment: This class was created automatically from a combination of ontologies
synonym: "gray matter of neuraxis of spinal cord" EXACT [OBOL:automatic]
synonym: "grey matter of spinal cord" EXACT []
synonym: "grey substance of spinal cord" EXACT []
synonym: "spinal cord gray matter" EXACT [OBOL:automatic]
synonym: "spinal cord gray matter of neuraxis" EXACT [OBOL:automatic]
synonym: "spinal cord grey matter" EXACT []
synonym: "spinal cord grey substance" EXACT [OBOL:automatic]
xref: FMA:83926
xref: MA:0000002
xref: NIF_GrossAnatomy:nlx_anat_100204
is_a: UBERON:0002020 ! gray matter of neuraxis
relationship: part_of UBERON:0002240
intersection_of: UBERON:0002020 ! gray matter of neuraxis
intersection_of: part_of UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002316
name: white matter of neuraxis
alt_id: UBERON:FMA_83929-MA_0001135
def: "Heterogeneous cluster of neurites in the brain and the spinal cord." [Wikipedia:White_matter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "white matter" EXACT []
synonym: "white substance" EXACT []
xref: AEO:0000139
xref: FMA:83929
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Spinal_nerve.svg/200px-Spinal_nerve.svg.png
xref: MA:0001135
xref: ncithesaurus:White_Matter
xref: OpenCyc:Mx4rwOAsDZwpEbGdrcN5Y29ycA
xref: ZFA:0001682
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0002317
name: white matter of cerebellum
alt_id: UBERON:FMA_83943-MA_0002430
def: "A white matter of neuraxis that is part of a cerebellum [Obol]." [OBOL:automatic]
synonym: "cerebellar white matter" EXACT []
synonym: "cerebellum white matter" EXACT []
synonym: "cerebellum white matter of neuraxis" EXACT [OBOL:automatic]
synonym: "cerebellum white substance" EXACT [OBOL:automatic]
synonym: "epencephalon-1 white matter" EXACT [OBOL:automatic]
synonym: "epencephalon-1 white matter of neuraxis" EXACT [OBOL:automatic]
synonym: "epencephalon-1 white substance" EXACT [OBOL:automatic]
synonym: "white matter of epencephalon-1" EXACT [OBOL:automatic]
synonym: "white matter of neuraxis of cerebellum" EXACT [OBOL:automatic]
synonym: "white matter of neuraxis of epencephalon-1" EXACT [OBOL:automatic]
synonym: "white substance of cerebellum" EXACT [OBOL:automatic]
synonym: "white substance of epencephalon-1" EXACT [OBOL:automatic]
xref: FMA:83943
xref: MA:0002430
xref: ncithesaurus:Cerebellum_White_Matter
xref: NIF_GrossAnatomy:birnlex_1562
xref: ZFA:0001708
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
relationship: part_of UBERON:0002037
intersection_of: UBERON:0002316 ! white matter of neuraxis
intersection_of: part_of UBERON:0002037 ! cerebellum
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002318
name: white matter of spinal cord
alt_id: UBERON:FMA_83945-MA_0000910
def: "the regions of the spinal cord that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008027]
comment: This class was created automatically from a combination of ontologies
synonym: "spinal cord white matter" EXACT []
synonym: "spinal cord white matter of neuraxis" EXACT [OBOL:automatic]
synonym: "spinal cord white substance" EXACT [OBOL:automatic]
synonym: "white matter of neuraxis of spinal cord" EXACT [OBOL:automatic]
synonym: "white substance of spinal cord" EXACT [OBOL:automatic]
xref: FMA:83945
xref: MA:0000910
is_a: UBERON:0002316 ! white matter of neuraxis
relationship: part_of UBERON:0002240
intersection_of: UBERON:0002316 ! white matter of neuraxis
intersection_of: part_of UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002319
name: mesangium
alt_id: UBERON:FMA_84139-MA_0002617
def: "inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries." [http://sourceforge.net/tracker/?group_id=76834&atid=974957, Wikipedia:Mesangium]
comment: WP considers this the same as glomerular mesangium. In MA, glomerular and extraglomerular are distingsuished.
subset: uberon_slim
xref: BTO:0002494
xref: FMA:84139
xref: MA:0002617
xref: ncithesaurus:Mesangium
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0000074 ! renal glomerulus
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0002320
name: glomerular mesangium
alt_id: UBERON:FMA_84140-MA_0002606
def: "A thin membrane which helps to support the capillary loops in a renal glomerulus. It is connective tissue composed of mesangial cells - myofibroblasts phenotypically related to vascular smooth muscle cells (MUSCLE, SMOOTH, VASCULAR), PHAGOCYTES and the mesangial EXTRACELLULAR MATRIX." [MESH:A.05.810.453.736.520.380, Wikipedia:Glomerular_mesangium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:84140
xref: GAID:430
xref: MA:0002606
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0000074 ! renal glomerulus
relationship: part_of UBERON:0002319 ! mesangium
[Term]
id: UBERON:0002321
name: extraglomerular mesangium
alt_id: UBERON:FMA_84141-MA_0002602
comment: This class was created automatically from a combination of ontologies
xref: FMA:84141
xref: MA:0002602
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: adjacent_to UBERON:0000074 ! renal glomerulus
relationship: part_of UBERON:0001229 ! renal corpuscle
relationship: part_of UBERON:0002303 ! juxtaglomerular apparatus
relationship: part_of UBERON:0002319 ! mesangium
[Term]
id: UBERON:0002322
name: periventricular nucleus
alt_id: UBERON:FMA_84354-ZFA_0000260
def: "." [Wikipedia:Periventricular_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:84354
xref: TAO:0000260
xref: ZFA:0000260
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002323
name: body cavity
alt_id: UBERON:0000169
alt_id: UBERON:FMA_85006-MA_0002447-ZFA_0001438
def: "fluid-filled space between epidermis and outer lining of gut cavity." [Wikipedia:Body_cavity]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "coelom" EXACT []
synonym: "coelomic cavity" EXACT []
synonym: "ventral body cavity" NARROW []
xref: AEO:0000186
xref: BTO:0001707
xref: EHDAA2:0000267
xref: FBbt:00005060
xref: FMA:85006
xref: galen:BodyCavity
xref: MA:0002447
xref: ncithesaurus:Cavity
xref: TAO:0001438
xref: ZFA:0001438
is_a: UBERON:0002553 ! anatomical cavity
is_a: UBERON:0004458 ! implied link automatically realized ! body cavity or lining
[Term]
id: UBERON:0002324
name: muscle of back
alt_id: UBERON:FMA_85216-MA_0000496
def: "A muscle organ that is part of a back [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "back muscle" EXACT []
synonym: "back muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of back" EXACT [OBOL:automatic]
xref: FMA:85216
xref: MA:0000496
is_a: UBERON:0001774 ! muscle of trunk
is_a: UBERON:0005174 ! implied link automatically realized ! back organ
relationship: part_of UBERON:0001137
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001137 ! back
relationship: part_of UBERON:0001137 ! back
[Term]
id: UBERON:0002325
name: epithelium of urethra
alt_id: UBERON:FMA_85275-MA_0001686
def: "An epithelium that is part of a urethra [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of urethra" EXACT [OBOL:automatic]
synonym: "urethra epithelial tissue" EXACT [OBOL:automatic]
synonym: "urethra epithelium" EXACT []
synonym: "urethral epithelium" RELATED []
xref: FMA:85275
xref: MA:0001686
xref: ncithesaurus:Urethra_Epithelium
is_a: UBERON:0000483 ! epithelium
relationship: part_of UBERON:0000057
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0002326
name: lamina propria of urethra
alt_id: UBERON:FMA_85276-MA_0001689
def: "A lamina propria that is part of a urethra [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "lamina propria mucosa of urethra" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of urethra" EXACT [OBOL:automatic]
synonym: "urethra lamina propria" EXACT []
synonym: "urethra lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "urethra lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "urethral lamina propria" RELATED []
xref: FMA:85276
xref: MA:0001689
is_a: UBERON:0000030 ! lamina propria
relationship: part_of UBERON:0000057
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0002327
name: trunk of intercostal nerve
alt_id: UBERON:FMA_85315-MA_0001176
comment: This class was created automatically from a combination of ontologies
synonym: "intercostal nerve trunk" EXACT []
synonym: "intercostal neural trunk" EXACT []
xref: FMA:85315
xref: MA:0001176
is_a: UBERON:0001147 ! trunk of peripheral nerve
[Term]
id: UBERON:0002328
name: notochord
alt_id: UBERON:FMA_85521-XAO_0000055-ZFA_0000135
def: "a flexible, rod-shaped body found in embryos of all chordates. It is composed of cells derived from the mesoderm and defines the primitive axis of the embryo. In some chordates, it persists throughout life as the main axial support of the body, while in most vertebrates it becomes the vertebral body of the vertebral column. The notochord is found ventral to the neural tube. The notochord is composed primarily of a core of glycoproteins, encased in a sheath of collagen fibers wound into two opposing helices. The angle between these fibers determines whether increased pressure in the core will result in shortening and thickening versus lengthening and thinning[WP]." [ISBN:0815318960, NLM:notochord, Wikipedia:Notochord, ZFIN:curator]
comment: Some organisms retain a post-embryonic notochord
subset: uberon_slim
synonym: "embryonic notocord" EXACT []
xref: AAO:0000327
xref: BTO:0001768
xref: EHDAA:1241
xref: EHDAA:6021
xref: EHDAA2:0001277
xref: FMA:85521
xref: GAID:1311
xref: HOG:0000199
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: MAT:0000281
xref: ncithesaurus:Notochord
xref: TAO:0000135
xref: XAO:0000055
xref: ZFA:0000135
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: develops_from UBERON:0004880 ! chordamesoderm
[Term]
id: UBERON:0002329
name: somite
alt_id: UBERON:FMA_85522-MIAA_0000068-XAO_0000058-ZFA_0000155
def: "A segmental mass of mesoderm in the vertebrate embryo, occurring in pairs along the notochord and developing into muscles and vertebrae[BTO]. Portion of mesoderm distributed along the two sides of the neural tube and that will eventually become dermis (dermatome), skeletal muscle (myotome), and vertebrae (sclerotome)[WP]. In Zebrafish: Any of the approximately 45 bilaterally paired blocks of mesoderm cells, lying on either side of the notochord and neural tube, and forming sequentially starting at the head during development of the embryo. Together they give rise to the axial skeleton (from the sclerotome), associated musculature (from the myotome), and dermis (from the dermatome). // Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes. Kimmel et al, 1995." [BTO:0001558, OMD:somite, Wikipedia:Somite, XB:curator, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "mesodermal cluster" EXACT [GO:0001756]
synonym: "somites" RELATED []
synonym: "somitic mesoderm" RELATED []
xref: BTO:0001558
xref: EHDAA:366
xref: EHDAA:699
xref: FMA:85522
xref: GAID:1306
xref: HOG:0000191
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: MAT:0000068
xref: MIAA:0000068
xref: ncithesaurus:Somite
xref: TAO:0000155
xref: XAO:0000058
xref: ZFA:0000155
is_a: UBERON:0000914 ! organismal segment
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0003059 ! presomitic mesoderm
relationship: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0002330
name: exocrine system
alt_id: UBERON:FMA_85539-MA_0002411
def: "Anatomical system that consists of the glands and parts of glands that produce exocrine secretions and help to integrate and control bodily metabolic activity. Exocrine glands are glands that secrete their products (hormones) into ducts (duct glands). They are the counterparts to endocrine glands, which secrete their products (hormones) directly into the bloodstream (ductless glands) or release hormones (paracrines) that affect only target cells nearby the release site. [Wikipedia]." [Wikipedia:Exocrine_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:85539
xref: MA:0002411
xref: ncithesaurus:Exocrine_System
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0002331
name: umbilical cord
alt_id: UBERON:FMA_85541-MIAA_0000280
def: "The connecting cord from the developing embryo or fetus to the placenta. During prenatal development, the umbilical cord comes from the same zygote as the fetus and (in humans) normally contains two arteries (the umbilical arteries) and one vein (the umbilical vein), buried within Wharton's jelly. The umbilical vein supplies the fetus with oxygenated, nutrient-rich blood from the placenta. Conversely, the umbilical arteries return the deoxygenated, nutrient-depleted blood[WP]." [Wikipedia:Umbilical_cord]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "birth cord" RELATED [Wikipedia:Umbilical_cord]
synonym: "connecting stalk" RELATED []
xref: BTO:0001415
xref: EFO:0001415
xref: EHDAA2:0000312
xref: FMA:85541
xref: GAID:517
xref: MAT:0000280
xref: MIAA:0000280
xref: ncithesaurus:Umbilical_Cord
xref: OpenCyc:Mx4rvyewDJwpEbGdrcN5Y29ycA
is_a: UBERON:0000478 ! extraembryonic structure
[Term]
id: UBERON:0002333
name: pulmonary trunk
alt_id: UBERON:FMA_8612-MA_0002033
def: "Pulmonary arterial trunk which is continuous with the right ventricle." [Wikipedia:Pulmonary_trunk]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pulmonary artery (trunk)" EXACT []
synonym: "trunk of pulmonary arterial tree" EXACT []
xref: EFO:0001399
xref: EHDAA:9831
xref: EHDAA2:0001576
xref: FMA:8612
xref: galen:PulmonaryTrunk
xref: HOG:0001134
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Alveoli_diagram.png/200px-Alveoli_diagram.png
xref: MA:0002033
xref: OpenCyc:Mx4rv-6d0ZwpEbGdrcN5Y29ycA
is_a: UBERON:0000063 ! organ segment
relationship: continuous_with UBERON:0002080 ! right ventricle
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0002334
name: submandibular duct
alt_id: UBERON:FMA_86266-MA_0002698
def: "The submandibular duct (Wharton's duct, submaxillary duct) is one of the salivary ducts. It is about 5 cm. long, and its wall is much thinner than that of the parotid duct. It begins by numerous branches from the deep surface of the gland, and runs forward between the mylohyoideus, hyoglossus, and genioglossus, then between the sublingual gland and the genioglossus, and opens by a narrow orifice on the summit of a small at the side of the frenulum linguæ. On the hyoglossus it lies between the lingual and hypoglossal nerves, but at the anterior border of the muscle it is crossed laterally by the lingual nerve; the terminal branches of the lingual nerve ascend on its medial side. It drains saliva from the submandibular glands and sublingual glands to the sublingual caruncle at the base of the tongue. It was initially described by the English anatomist Thomas Wharton and sometimes referred to by his name. [WP,unvetted]." [Wikipedia:Submandibular_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:86266
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray1024.png/200px-Gray1024.png
xref: MA:0002698
xref: ncithesaurus:Submandibular_Duct
is_a: UBERON:0001837 ! duct of salivary gland
relationship: part_of UBERON:0001736 ! submandibular gland
[Term]
id: UBERON:0002335
name: macula densa
alt_id: UBERON:FMA_86333-MA_0002603
def: "." [Wikipedia:Macula_densa]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0003940
xref: FMA:86333
xref: MA:0002603
xref: ncithesaurus:Macula_Densa
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002303 ! juxtaglomerular apparatus
[Term]
id: UBERON:0002336
name: corpus callosum
alt_id: UBERON:FMA_86464-MA_0000188-MIAA_0000286
def: "The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provides communications between the right and left cerebral hemispheres[GO]." [Wikipedia:Corpus_callosum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000615
xref: EFO:0001390
xref: FMA:86464
xref: GAID:683
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Gray733.png/200px-Gray733.png
xref: MA:0000188
xref: MAT:0000286
xref: MIAA:0000286
xref: ncithesaurus:Corpus_Callosum
xref: NIF_GrossAnatomy:birnlex_1087
xref: OpenCyc:Mx4rvbNzdZwpEbGdrcN5Y29ycA
is_a: UBERON:0002473 ! intercerebral commissure
[Term]
id: UBERON:0002337
name: endometrial stroma
alt_id: UBERON:FMA_86487-MA_0002734
comment: This class was created automatically from a combination of ontologies
synonym: "endometrium stroma" EXACT []
synonym: "stroma of endometrium" EXACT []
xref: FMA:86487
xref: MA:0002734
xref: ncithesaurus:Endometrial_Stroma
is_a: UBERON:0003891 ! stroma
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001295 ! endometrium
[Term]
id: UBERON:0002338
name: lamina propria of bronchus
alt_id: UBERON:FMA_86619-MA_0001836
def: "A lamina propria that is part of a bronchus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchi lamina propria" EXACT [OBOL:automatic]
synonym: "bronchi lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "bronchi lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "bronchial trunk lamina propria" EXACT [OBOL:automatic]
synonym: "bronchial trunk lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "bronchial trunk lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "bronchus lamina propria" EXACT []
synonym: "bronchus lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "bronchus lamina propria mucosae" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of bronchi" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of bronchial trunk" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of bronchus" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of bronchi" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of bronchial trunk" EXACT [OBOL:automatic]
synonym: "lamina propria mucosae of bronchus" EXACT [OBOL:automatic]
synonym: "lamina propria of bronchi" EXACT [OBOL:automatic]
synonym: "lamina propria of bronchial trunk" EXACT [OBOL:automatic]
xref: FMA:86619
xref: MA:0001836
xref: ncithesaurus:Bronchus_Lamina_Propria
is_a: UBERON:0000030 ! lamina propria
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0004779 ! implied link automatically realized ! respiratory system lamina propria
relationship: part_of UBERON:0002185
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0002339
name: epithelium of lobar bronchus
alt_id: UBERON:FMA_86624-MA_0001842
def: "An epithelium that is part of a lobar bronchus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of lobar bronchus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of secondary bronchus" EXACT [OBOL:automatic]
synonym: "epithelium of secondary bronchus" EXACT [OBOL:automatic]
synonym: "lobar bronchial epithelium" EXACT []
synonym: "lobar bronchus epithelial tissue" EXACT [OBOL:automatic]
synonym: "lobar bronchus epithelium" EXACT []
synonym: "secondary bronchus epithelial tissue" EXACT [OBOL:automatic]
synonym: "secondary bronchus epithelium" EXACT [OBOL:automatic]
xref: FMA:86624
xref: MA:0001842
is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium
is_a: UBERON:0002031 ! implied link automatically realized ! epithelium of bronchus
relationship: part_of UBERON:0002183
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0002340
name: epithelium of main bronchus
alt_id: UBERON:0003245
alt_id: UBERON:FMA_86625-MA_0001847
def: "An epithelium that is part of a main bronchus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bronchus principalis epithelial tissue" EXACT [OBOL:automatic]
synonym: "bronchus principalis epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of bronchus principalis" EXACT [OBOL:automatic]
synonym: "epithelial tissue of main bronchus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of primary bronchus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of principal bronchus" EXACT [OBOL:automatic]
synonym: "epithelium of bronchus principalis" EXACT [OBOL:automatic]
synonym: "epithelium of primary bronchus" EXACT [OBOL:automatic]
synonym: "epithelium of principal bronchus" EXACT [OBOL:automatic]
synonym: "main bronchial epithelium" EXACT []
synonym: "main bronchus epithelial tissue" EXACT [OBOL:automatic]
synonym: "main bronchus epithelium" EXACT []
synonym: "primary bronchus epithelial tissue" EXACT [OBOL:automatic]
synonym: "primary bronchus epithelium" EXACT [OBOL:automatic]
synonym: "principal bronchus epithelial tissue" EXACT [OBOL:automatic]
synonym: "principal bronchus epithelium" EXACT [OBOL:automatic]
xref: EHDAA:5003
xref: EHDAA2:0001047
xref: FMA:86625
xref: HOG:0001034
xref: MA:0001847
is_a: UBERON:0002031 ! epithelium of bronchus
relationship: part_of UBERON:0002182
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002182 ! main bronchus
relationship: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0002341
name: epithelium of segmental bronchus
alt_id: UBERON:FMA_86626-MA_0001850
def: "An epithelium that is part of a segmental bronchus [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "epithelial tissue of segmental bronchus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of tertiary bronchus" EXACT [OBOL:automatic]
synonym: "epithelium of tertiary bronchus" EXACT [OBOL:automatic]
synonym: "segmental bronchial epithelium" EXACT []
synonym: "segmental bronchus epithelial tissue" EXACT [OBOL:automatic]
synonym: "segmental bronchus epithelium" EXACT []
synonym: "tertiary bronchus epithelial tissue" EXACT [OBOL:automatic]
synonym: "tertiary bronchus epithelium" EXACT [OBOL:automatic]
xref: FMA:86626
xref: MA:0001850
is_a: UBERON:0002031 ! epithelium of bronchus
relationship: part_of UBERON:0002184
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002184 ! segmental bronchus
relationship: part_of UBERON:0002184 ! segmental bronchus
[Term]
id: UBERON:0002342
name: neural crest
alt_id: UBERON:FMA_86666-MIAA_0000066-XAO_0000048-ZFA_0000045
def: "A group of embryonic cells that loosen and separate from the neural plate and surrounding epidermis during neurulation and migrate to give several different lineages of adult cells. Wikipedia: The neural crest, a transient component of the ectoderm, is located in between the neural tube and the epidermis (or the free margins of the neural folds) of an embryo during neural tube formation. Neural crest cells quickly migrate during or shortly after neurulation, an embryological event marked by neural tube closure." [ISBN:0815318960, OMD:neural+crest, Wikipedia:Neural_crest, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001764
xref: EHDAA:1334
xref: EHDAA:1348
xref: EHDAA:1354
xref: EHDAA:1379
xref: EHDAA:1389
xref: EHDAA:1399
xref: EHDAA:1414
xref: EHDAA:1429
xref: EHDAA:1439
xref: EHDAA:1449
xref: EHDAA:1500
xref: EHDAA:1989
xref: EHDAA:2011
xref: EHDAA:2023
xref: EHDAA:2045
xref: EHDAA:2067
xref: EHDAA:2079
xref: EHDAA:2091
xref: EHDAA:2813
xref: EHDAA:2827
xref: EHDAA:2921
xref: EHDAA:308
xref: EHDAA:324
xref: EHDAA:3510
xref: EHDAA:3666
xref: EHDAA:3682
xref: EHDAA:838
xref: EHDAA:862
xref: EHDAA:872
xref: EHDAA:882
xref: EHDAA:892
xref: EHDAA:906
xref: FMA:86666
xref: GAID:1310
xref: HOG:0000057
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray644.png/200px-Gray644.png
xref: MAT:0000066
xref: MIAA:0000066
xref: ncithesaurus:Neural_Crest
xref: TAO:0000045
xref: XAO:0000048
xref: ZFA:0000045
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0002346 ! neural ectoderm
[Term]
id: UBERON:0002343
name: abdomen musculature
alt_id: UBERON:FMA_86917-ZFA_0001327
def: "Set of all muscles in abdomen." [OBOL:automatic]
comment: note distinction between abdomen muscle and abdomen musculature
synonym: "abdominal musculature" EXACT []
synonym: "musculature of abdomen" EXACT []
xref: FMA:71294
xref: FMA:86917
xref: TAO:0001327
xref: ZFA:0001327
is_a: UBERON:0001015 ! musculature
relationship: part_of UBERON:0000916
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0002345
name: descending thoracic aorta
alt_id: UBERON:FMA_87217-MA_0002572
def: "the part of the aorta that extends from the arch of the aorta to the diaphragm, and from which arises numerous branches that supply oxygenated blood to the chest cage and the organs within the chest." [MP:0009868]
comment: This class was created automatically from a combination of ontologies
xref: EFO:0002527
xref: FMA:87217
xref: MA:0002572
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001514 ! descending aorta
relationship: part_of UBERON:0001515 ! thoracic aorta
[Term]
id: UBERON:0002346
name: neural ectoderm
alt_id: UBERON:FMA_87657-MIAA_0000176-XAO_0000042-ZFA_0001120
def: "The first stage of neural differentiation of ectoderm - it gives rise to the neural and neural crest cells, // Embryonic ectoderm that gives rise to nervous tissue." [NLM:neuroectoderm, Wikipedia:Neuroectoderm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "neuaral ectoderm" RELATED []
synonym: "neurectoderm" EXACT []
synonym: "neuroectoderm" EXACT []
synonym: "presumptive central nervous system" RELATED []
xref: AAO:0000469
xref: BILA:0000039
xref: EHDAA:1498
xref: EHDAA:255
xref: EHDAA2:0001248
xref: FBbt:00001061
xref: FMA:87657
xref: HOG:0000150
xref: MAT:0000176
xref: MIAA:0000176
xref: ncithesaurus:Neuroectoderm
xref: TAO:0001120
xref: XAO:0000042
xref: ZFA:0001120
is_a: UBERON:0000923 ! germ layer
is_a: UBERON:0005085 ! implied link automatically realized ! ectodermal placode
relationship: part_of UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0002347
name: thoracic vertebra
alt_id: UBERON:FMA_9139-MA_0000314
def: "In humans, the 12 thoracic vertebrae compose the middle segment of the vertebral column, between the cervical vertebrae and the lumbar vertebrae. They are intermediate in size between those of the cervical and lumbar regions; they increase in size as one proceeds down the spine, the upper vertebrae being much smaller than those in the lower part of the region. They are distinguished by the presence of facets on the sides of the bodies for articulation with the heads of the ribs, and facets on the transverse processes of all, except the eleventh and twelfth, for articulation with the tubercles of the ribs. [WP,unvetted]." [Wikipedia:Thoracic_vertebra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dorsal vertebra" EXACT []
synonym: "thorax vertebra" EXACT [OBOL:automatic]
synonym: "vertebra of thorax" EXACT [OBOL:automatic]
synonym: "vertebra thoracica" EXACT []
xref: FMA:9139
xref: GAID:244
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Gray90.png/200px-Gray90.png
xref: MA:0000314
xref: ncithesaurus:Thoracic_Vertebra
xref: OpenCyc:Mx4rvdZIBpwpEbGdrcN5Y29ycA
is_a: UBERON:0002412 ! vertebra
is_a: UBERON:0003827 ! implied link automatically realized ! thoracic segment bone
relationship: part_of UBERON:0000915
intersection_of: UBERON:0002412 ! vertebra
intersection_of: part_of UBERON:0000915 ! thorax
relationship: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0002348
name: epicardium
alt_id: UBERON:FMA_9461-XAO_0000316-ZFA_0005057
def: "Region of visceral serous pericardium which has as its part, the mesothelium, subepicardial layer of epicardium and the fibroelastic connective tissue that is attached to the myocardium and is continuous with the parietal serous pericardium[FMA]. External layer of the heart[ZFA]." [Wikipedia:Epicardium, ZFIN:curator]
comment: TODO - check links with UBERON:0002425 visceral serous pericardium. develops from proepicardium. WP:Epicardium -- When considered as a part of the pericardium, it is the inner layer, or visceral pericardium, continuous with the serous layer.
subset: uberon_slim
synonym: "heart epicardium" EXACT []
synonym: "visceral serous pericardium of heart" EXACT []
xref: FMA:9461
xref: galen:Epicardium
xref: HOG:0000119
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png
xref: ncithesaurus:Epicardium
xref: TAO:0005057
xref: XAO:0000316
xref: ZFA:0005057
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0004160 ! proepicardium
relationship: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0002425 ! visceral serous pericardium
[Term]
id: UBERON:0002349
name: myocardium
alt_id: UBERON:FMA_9462-MA_0000164-XAO_0000065-ZFA_0001319
def: "middle muscular layer of the heart wall[M-W]. Muscle layer of organ which has as its parts the myocardium proper and the conducting system of the heart[FMA]." [Wikipedia:Myocardium]
comment: TODO - check 'Myocardum proper' in FMA. We superclass the more generic class for now. FMA has is_a muscle layer - should we add this? ZFA and BTO both have is_a 'cardiac muscle' (tissue?). But in U we also follow FMA and have cardiac muscle tissue of myocardium (there is also Fibrocollagenous connective tissue of myocardium), which would be identical (see issue-10).
subset: uberon_slim
synonym: "cardiac muscle" RELATED [ZFA:0001319]
synonym: "heart myocardium" EXACT []
xref: BTO:0000901
xref: EFO:0000819
xref: EHDAA:1275
xref: EHDAA:1283
xref: EHDAA:1926
xref: EHDAA:1934
xref: EHDAA:3383
xref: EHDAA:3395
xref: EHDAA:430
xref: EHDAA:446
xref: EHDAA:454
xref: EHDAA:462
xref: EHDAA:470
xref: EHDAA:478
xref: EHDAA:5347
xref: EHDAA:5356
xref: EHDAA:776
xref: EHDAA:784
xref: EHDAA:792
xref: EHDAA:804
xref: EHDAA:812
xref: EHDAA2:0001220
xref: FMA:9462
xref: GAID:173
xref: galen:Myocardium
xref: HOG:0000083
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Glanzstreifen.jpg/200px-Glanzstreifen.jpg
xref: MA:0000164
xref: MAT:0000453
xref: ncithesaurus:Myocardium
xref: OpenCyc:Mx4ro36AFrCvEduAAAAOpmP6tw
xref: TAO:0001319
xref: XAO:0000065
xref: ZFA:0001319
is_a: UBERON:0005983 ! heart layer
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002350
name: conducting system of heart
alt_id: UBERON:FMA_9476-ZFA_0005063
def: "Conducting tissue of heart which consists of specialized cardiac myocyte in the myocardium." []
comment: This class was created automatically from a combination of ontologies
synonym: "cardiac conduction system" EXACT []
synonym: "cardionector" EXACT []
synonym: "central conduction system" RELATED []
xref: FMA:9476
xref: HOG:0001271
xref: TAO:0005063
xref: ZFA:0005063
is_a: UBERON:0001133 ! cardiac muscle tissue
[Term]
id: UBERON:0002351
name: sinuatrial node
alt_id: UBERON:FMA_9477-MA_0000097-ZFA_0005069
def: "part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays electrical signals to the AV node[GO]. Subdivision of conducting system of heart at the junction of the right atrium and the superior vena cava, around the sinoatrial nodal branch of right coronary artery and is continuous with the internodal tract[FMA]." [GO:0003163, Wikipedia:Sinoatrial_node]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Koch's node" EXACT []
synonym: "node of keith-flack" EXACT []
synonym: "sa nodal muscle tissue" EXACT []
synonym: "sa node" EXACT []
synonym: "sinoatrial node" EXACT []
synonym: "sinu-atrial node" EXACT []
synonym: "sinuatrial nodal muscle tissue" EXACT []
synonym: "sinus node" EXACT []
synonym: "sinus node of keith and flack" EXACT []
xref: FMA:9477
xref: GAID:561
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d2/Sinoatrial_node_low_mag.jpg/200px-Sinoatrial_node_low_mag.jpg
xref: MA:0000097
xref: ncithesaurus:Sinoatrial_Node
xref: OpenCyc:Mx4rOhejDGMcEd2AAABQjYGu0g
xref: TAO:0005069
xref: ZFA:0005069
is_a: UBERON:0001133 ! cardiac muscle tissue
relationship: part_of UBERON:0002350 ! conducting system of heart
[Term]
id: UBERON:0002352
name: atrioventricular node
alt_id: UBERON:FMA_9478-MA_0000095-ZFA_0005070
def: "Subdivision of conducting system of heart which is located in the muscular part of the interatrial septum that is continuous with the atrioventricular bundle." [Wikipedia:Atrioventricular_node]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "aschoff-tawara node" EXACT []
synonym: "atrioventricular nodal muscle tissue" EXACT []
synonym: "av nodal muscle tissue" EXACT []
synonym: "av node" EXACT []
synonym: "node of tawara" EXACT []
xref: EFO:0000276
xref: FMA:9478
xref: GAID:558
xref: HOG:0001474
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Gray501.png/200px-Gray501.png
xref: MA:0000095
xref: MAT:0000498
xref: ncithesaurus:Atrioventricular_Node
xref: OpenCyc:Mx4rMfD91mMcEd2AAABQjYGu0g
xref: TAO:0005070
xref: ZFA:0005070
is_a: UBERON:0001133 ! cardiac muscle tissue
is_a: UBERON:0004490 ! implied link automatically realized ! cardiac muscle tissue of atrium
relationship: part_of UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002350 ! conducting system of heart
[Term]
id: UBERON:0002353
name: atrioventricular bundle
alt_id: UBERON:FMA_9484-MA_0002576
def: "Subdivision of conducting system of heart which consists of the atrial part and the ventricular part of the atrioventricular bundle and is the direct continuation of the atrioventricular node." [Wikipedia:Bundle_of_His]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "atrioventricular bundle muscle tissue" EXACT []
synonym: "atrioventricular fasciculus" EXACT []
synonym: "bundle of his" RELATED []
synonym: "His bundle" RELATED []
xref: FMA:9484
xref: GAID:559
xref: galen:BundleOfHis
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/ECG_Principle_fast.gif/200px-ECG_Principle_fast.gif
xref: MA:0002576
xref: ncithesaurus:Atrioventricular_Bundle
xref: OpenCyc:Mx4rUv1WcGPJEd2AAABQjYGu0g
is_a: UBERON:0001133 ! cardiac muscle tissue
relationship: part_of UBERON:0002350 ! conducting system of heart
[Term]
id: UBERON:0002354
name: purkinje fiber
alt_id: UBERON:FMA_9492-MA_0000096
def: "Conducting tissue of heart which consists of Purkinje myocytes." [Wikipedia:Purkinje_fiber]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "myofibra conducens cardiacus" EXACT []
xref: FMA:9492
xref: GAID:560
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray498.png/200px-Gray498.png
xref: MA:0000096
xref: ncithesaurus:Purkinje_Fiber
is_a: UBERON:0001133 ! cardiac muscle tissue
relationship: part_of UBERON:0002350 ! conducting system of heart
[Term]
id: UBERON:0002355
name: pelvis
alt_id: UBERON:FMA_9578-MA_0000030
def: "Subdivision of trunk, which is demarcated from the abdomen by the plane of the superior pelvic aperture, and from the perineum by the inferior surface of the pelvic diaphragm; together with the thorax, abdomen, and perineum, it constitutes the trunk. Examples: There is only one pelvis." [Wikipedia:Pelvis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001006
xref: FMA:9578
xref: GAID:87
xref: galen:Pelvis
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray242.png/200px-Gray242.png
xref: MA:0000030
xref: ncithesaurus:Pelvis
xref: OpenCyc:Mx4rvVjiTJwpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0002356
name: perineum
alt_id: UBERON:FMA_9579-MA_0002466
def: "Subdivision of trunk, which is demarcated from the pelvis by the inferior surface of the pelvic diaphragm and from the lower limbs by the perineofemoral lines; together with the thorax, abdomen, and pelvis, it constitutes the trunk. Examples: There is only one perineum." [Wikipedia:Perineum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "perineal region" EXACT []
xref: FMA:9579
xref: GAID:90
xref: galen:Perineum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ef/Gray406.png/200px-Gray406.png
xref: MA:0002466
xref: ncithesaurus:Perineum
xref: OpenCyc:Mx4rvcHSh5wpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0002357
name: serous pericardium
alt_id: UBERON:FMA_9582-MA_0002739
def: "Serous membrane which has as its parts the epicardium and parietal serous pericardium that surrounds pericardial cavity." [Wikipedia:Serous_pericardium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "serous portion of pericardium" EXACT []
xref: FMA:9582
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png
xref: MA:0002739
is_a: UBERON:0000042 ! serous membrane
relationship: part_of UBERON:0002406 ! pericardial sac
[Term]
id: UBERON:0002358
name: peritoneum
alt_id: UBERON:FMA_9584-XAO_0000139-ZFA_0005120
def: "A serous membrane that forms the lining of the abdominal cavity or the coelom — it covers most of the intra-abdominal (or coelomic) organs — in higher vertebrates and some invertebrates (annelids, for instance). It is composed of a layer of mesothelium supported by a thin layer of connective tissue. The peritoneum both supports the abdominal organs and serves as a conduit for their blood and lymph vessels and nerves[WP]. The smooth transparent serous membrane that lines the cavity of the abdomen of a mammal and is folded inward over the abdominal and pelvic viscera[BTO]. The endothelial lining of the ABDOMINAL CAVITY. The parietal peritoneum covers the inside of the ABDOMINAL WALL and the visceral peritoneum covers the bowel, the MESENTERY, and certain of the organs. The portion that covers the bowel becomes the serosal layer of the bowel wall[GAID]." [Wikipedia:Peritoneum, ZFIN:curator]
comment: TODO - in ZFA is_a epithelium
subset: uberon_slim
xref: BTO:0001472
xref: FMA:9584
xref: GAID:18
xref: galen:Peritoneum
xref: HOG:0001257
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5f/Gray1040.png/200px-Gray1040.png
xref: ncithesaurus:Peritoneum
xref: OpenCyc:Mx4rvjJ72ZwpEbGdrcN5Y29ycA
xref: TAO:0005120
xref: XAO:0000139
xref: ZFA:0005120
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0003684 ! abdominal cavity
[Term]
id: UBERON:0002359
name: fibrous pericardium
alt_id: UBERON:FMA_9586-MA_0002738
def: "Membrane organ which is attached to the pericardial sac proper and the central tendon of diaphragm and is continuous with the pretracheal fascia." [Wikipedia:Fibrous_pericardium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fibrous portion of pericardium" EXACT []
xref: FMA:9586
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png
xref: MA:0002738
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0002407 ! pericardium
[Term]
id: UBERON:0002360
name: meninx
alt_id: UBERON:FMA_9589-MA_0001113
def: "Membrane organ that surrounds the brain and the spinal cord // Wikipedia: system of membranes which envelops the central nervous system. Whereas cyclostomes and fishes only have a single envelope called the primitive meninx, amphibians have two layers, consisting of an outer dura mater which is extremely dense and protective, and a pia-arachnoid or secondary meninx which is more delicate and vascular. Mammals have three meninges: pia mater (which follows all the convolutions of the brain and is the most interior), the arachnoid layer (which is delicate and sends strands to the pia mater), and the dura mater (the outer, more protective meninx). The area between the dura mater and the arachnoid layer is called the subdural space; the area between the arachnoid layer is called the subarachnoid space. An additional layer of tissue lies between the two hemispheres of the cerebrum and is called the falx cerebri. " [http://www.shsu.edu/~bio_mlt/Chap15.html, Wikipedia:Meninx]
comment: TODO: check singular/plural
subset: uberon_slim
synonym: "meninges" EXACT []
xref: BTO:0000144
xref: EFO:0000584
xref: EFO:0000867
xref: EHDAA:1365
xref: EHDAA:1959
xref: EHDAA:1999
xref: EHDAA:2097
xref: EHDAA:2683
xref: EHDAA:2831
xref: EHDAA:2865
xref: EHDAA:3688
xref: EHDAA:3708
xref: EHDAA:5458
xref: EHDAA:5476
xref: FMA:9589
xref: GAID:687
xref: HOG:0001295
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Illu_meninges.jpg/200px-Illu_meninges.jpg
xref: MA:0001113
xref: MAT:0000113
xref: ncithesaurus:Meninges
xref: NIF_GrossAnatomy:nlx_anat_090204
xref: OpenCyc:Mx4rwDOl8JwpEbGdrcN5Y29ycA
xref: ZFA:0001355
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0002361
name: pia mater
alt_id: UBERON:FMA_9590-MA_0001116
def: "delicate innermost layer of the meninges—the membranes surrounding the brain and spinal cord. The thin, mesh-like pia mater closely envelops the entire surface of the brain, running down into the fissures of the cortex. It joins with the ependyma which lines the ventricles to form choroid plexuses that produce cerebrospinal fluid. In the spinal cord, the pia mater attaches to the dura mater by the denticular ligaments through the arachnoid membrane. The pia mater is a neural crest derivative." [Wikipedia:Pia_mater]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pia mater of neuraxis" EXACT []
xref: BTO:0001635
xref: EHDAA:1367
xref: EHDAA:1961
xref: EHDAA:2001
xref: EHDAA:2099
xref: EHDAA:2685
xref: EHDAA:2833
xref: EHDAA:2867
xref: EHDAA:3692
xref: EHDAA:3710
xref: EHDAA:6566
xref: EHDAA:6583
xref: EHDAA2:0001464
xref: FMA:9590
xref: GAID:693
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Gray770.png/200px-Gray770.png
xref: MA:0001116
xref: ncithesaurus:Pia_Mater
xref: NIF_GrossAnatomy:nlx_anat_090209
xref: OpenCyc:Mx4rvtesBZwpEbGdrcN5Y29ycA
is_a: UBERON:0002360 ! meninx
[Term]
id: UBERON:0002362
name: arachnoid mater
alt_id: UBERON:FMA_9591-MA_0001114
def: "One of the three meninges, the membranes that cover the brain and spinal cord. It is interposed between the two other meninges, the more superficial dura mater and the deeper pia mater, and is separated from the pia mater by the subarachnoid space." [Wikipedia:Arachnoid_mater]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arachnoid" EXACT []
synonym: "arachnoid mater of neuraxis" EXACT []
xref: BTO:0001636
xref: FMA:9591
xref: GAID:688
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a0/Gray767.png/200px-Gray767.png
xref: MA:0001114
xref: ncithesaurus:Arachnoiditis
xref: NIF_GrossAnatomy:nlx_anat_090208
xref: OpenCyc:Mx4rve5HlJwpEbGdrcN5Y29ycA
is_a: UBERON:0002360 ! meninx
[Term]
id: UBERON:0002363
name: dura mater
alt_id: UBERON:FMA_9592-MA_0001115
def: "the outermost of the three layers of the meninges surrounding the brain and spinal cord. The other two meningeal layers are the pia mater and the arachnoid mater. The dura surrounds the brain and the spinal cord and is responsible for keeping in the cerebrospinal fluid." [Wikipedia:Dura_mater]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dura mater of neuraxis" EXACT []
xref: BTO:0001637
xref: EMAPA:17776
xref: FMA:9592
xref: GAID:691
xref: MA:0001115
xref: ncithesaurus:Dura_Mater
xref: NIF_GrossAnatomy:nlx_anat_090206
xref: OpenCyc:Mx4rvvmzqZwpEbGdrcN5Y29ycA
is_a: UBERON:0002360 ! meninx
relationship: part_of UBERON:0002360 ! meninx
[Term]
id: UBERON:0002364
name: tympanic membrane
alt_id: UBERON:FMA_9595-MA_0000257
def: "The tympanic membrane (also tympanum, myrinx or eardrum), is a thin membrane that separates the external ear from the middle ear. Its function is to transmit sound from the air to the ossicles inside the middle ear. The malleus bone bridges the gap between the eardrum and the other ossicles. Rupture or perforation of the eardrum can lead to conductive hearing loss. [WP,unvetted]." [Wikipedia:Tympanic_membrane]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ear drum" EXACT []
synonym: "eardrum" EXACT []
synonym: "lateral wall of tympanic cavity" EXACT []
synonym: "membranous wall of tympanic cavity" EXACT []
synonym: "Rivinus' membrane" EXACT []
xref: FMA:9595
xref: GAID:870
xref: HOG:0001146
xref: MA:0000257
xref: ncithesaurus:Tympanic_Membrane
is_a: UBERON:0000094 ! membrane organ
relationship: part_of UBERON:0004114 ! tympanic cavity
[Term]
id: UBERON:0002365
name: exocrine gland
alt_id: UBERON:FMA_9596-MA_0002564
def: "A gland that secretes products (excluding hormones and other chemical messengers) into ducts (duct glands) which lead directly into the external environment[WP]. Typical exocrine glands include sweat glands, salivary glands, mammary glands, stomach, liver, pancreas" [Wikipedia:Exocrine_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ducted gland" EXACT []
synonym: "exocrine gland" EXACT []
synonym: "glandula exocrina" EXACT []
xref: AEO:0000097
xref: BTO:0000765
xref: EHDAA2:0003097
xref: FMA:9596
xref: GAID:34
xref: MA:0002564
xref: ncithesaurus:Exocrine_Gland
is_a: UBERON:0002530 ! implied link automatically realized ! gland
relationship: part_of UBERON:0002330
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0002366
name: bulbo-urethral gland
alt_id: UBERON:FMA_9599-MA_0000401
def: "Lobular organ the parenchyma of which consists of glandular acini which communicate the bulbar part of the urethra. Examples: There only two instances, right and left bulbo-urethral glands." [Wikipedia:Bulbo-urethral_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bulbourethral gland" EXACT []
synonym: "Cowper's gland" EXACT []
synonym: "Cowper's glands" EXACT []
xref: BTO:0001698
xref: FMA:9599
xref: GAID:387
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Male_anatomy.png/200px-Male_anatomy.png
xref: MA:0000401
is_a: UBERON:0001338 ! implied link automatically realized ! urethral gland
is_a: UBERON:0002530 ! gland
is_a: UBERON:0003937 ! implied link automatically realized ! sex gland
relationship: part_of UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0001333 ! male urethra
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0002367
name: prostate gland
alt_id: UBERON:FMA_9600-MA_0000404-MIAA_0000078
def: "The prostate gland is a partly muscular, partly glandular body that is situated near the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid." [GO:0030850, Wikipedia:Prostate]
comment: TODO - FMA treats the gland as part of the prostate - see also FMA:74119.
subset: uberon_slim
synonym: "prostate" EXACT []
xref: BTO:0001129
xref: EFO:0000858
xref: FMA:9600
xref: GAID:392
xref: galen:ProstateGland
xref: HOG:0001261
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Prostatelead.jpg/200px-Prostatelead.jpg
xref: MA:0000404
xref: MAT:0000078
xref: MIAA:0000078
xref: ncithesaurus:Prostate_Gland
xref: OpenCyc:Mx4rv6trqZwpEbGdrcN5Y29ycA
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002530 ! gland
is_a: UBERON:0005399 ! implied link automatically realized ! male reproductive gland
relationship: develops_from UBERON:0003280 ! endothelium of main bronchus
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0002368
name: endocrine gland
alt_id: UBERON:FMA_9602-MA_0002563
def: "Endocrine glands are glands of the endocrine system that secrete their products, hormones, directly into the blood rather than through a duct. The main endocrine glands include the pituitary gland, pancreas, ovaries, testes, thyroid gland, and adrenal glands. The hypothalamus is a neuroendocrine organ. Other organs which are not so well known for their endocrine activity include the stomach, which produces such hormones as ghrelin[WP]." [Wikipedia:Endocrine_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ductless gland" EXACT []
synonym: "glandula endocrina" EXACT []
xref: AEO:0000098
xref: BTO:0001488
xref: EHDAA2:0003098
xref: FMA:9602
xref: GAID:335
xref: MA:0002563
xref: ncithesaurus:Endocrine_Gland
xref: OpenCyc:Mx4rvbkiRZwpEbGdrcN5Y29ycA
is_a: UBERON:0002530 ! implied link automatically realized ! gland
relationship: part_of UBERON:0000949
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0002369
name: adrenal gland
alt_id: UBERON:FMA_9604-MA_0000116-MIAA_0000071-XAO_0000164
def: "This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells[GO]." [Wikipedia:Adrenal_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adrenal medulla cell" RELATED []
synonym: "suprarenal gland" RELATED []
xref: BTO:0000047
xref: EFO:0000238
xref: FMA:9604
xref: GAID:446
xref: galen:AdrenalGland
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c6/Illu_endocrine_system.jpg/200px-Illu_endocrine_system.jpg
xref: MA:0000116
xref: MAT:0000071
xref: MIAA:0000071
xref: ncithesaurus:Adrenal_Gland
xref: OpenCyc:Mx4rvXYiz5wpEbGdrcN5Y29ycA
xref: XAO:0000164
is_a: UBERON:0002368 ! implied link automatically realized ! endocrine gland
is_a: UBERON:0002530 ! gland
is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0002370
name: thymus
alt_id: UBERON:FMA_9607-MA_0000142-MIAA_0000080-XAO_0000163-ZFA_0001078
def: "Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [NLM:thymus, Wikipedia:Thymus]
comment: check - a subtype of gland? not in GO. NCIT has thymus and thymus gland
subset: uberon_slim
synonym: "thymus gland" EXACT []
xref: BTO:0001374
xref: EFO:0000860
xref: EHDAA:9119
xref: EHDAA2:0002017
xref: FMA:9607
xref: GAID:464
xref: HOG:0000253
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Illu_thymus.jpg/200px-Illu_thymus.jpg
xref: MA:0000142
xref: MAT:0000080
xref: MIAA:0000080
xref: ncithesaurus:Thymus_Gland
xref: OpenCyc:Mx4rvpIympwpEbGdrcN5Y29ycA
xref: TAO:0001078
xref: XAO:0000163
xref: ZFA:0001078
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004177 ! implied link automatically realized ! hemopoietic organ
is_a: UBERON:0005057 ! implied link automatically realized ! immune organ
is_a: UBERON:0005178 ! implied link automatically realized ! thoracic cavity organ
relationship: part_of UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0002405 ! immune system
[Term]
id: UBERON:0002371
name: bone marrow
alt_id: UBERON:FMA_9608-MA_0000134-MIAA_0000084-XAO_0000123-ZFA_0000669
def: "flexible tissue found in the hollow interior of bones. In adults, marrow in large bones produces new blood cells[WP]." [Wikipedia:Bone_marrow]
comment: TODO - create superclass for bone marrow / head kidney. both are portions of tissue in the hematopoetic system
subset: uberon_slim
synonym: "anterior kidney" RELATED []
synonym: "head kidney" BROAD []
synonym: "kidney marrow" RELATED []
synonym: "medulla ossea" EXACT []
xref: BTO:0000141
xref: EFO:0000868
xref: FMA:9608
xref: GAID:1287
xref: galen:BoneMarrow
xref: HOG:0001218
xref: MA:0000134
xref: MAT:0000084
xref: MIAA:0000084
xref: ncithesaurus:Bone_Marrow
xref: OpenCyc:Mx4rvVm-FpwpEbGdrcN5Y29ycA
xref: XAO:0000123
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001474 ! bone
relationship: part_of UBERON:0002390 ! hematopoietic system
[Term]
id: UBERON:0002372
name: tonsil
alt_id: UBERON:FMA_9609-MA_0000143
def: "Portion of lymphoid tissue on either side of the throat." [Wikipedia:Tonsil]
comment: Most commonly, the term "tonsils" refers to the palatine tonsils that can be seen in the back of the throat.
subset: uberon_slim
xref: BTO:0001387
xref: EFO:0001401
xref: FMA:9609
xref: GAID:341
xref: HOG:0001139
xref: MA:0000143
xref: ncithesaurus:Tonsil
xref: OpenCyc:Mx4rvVivrZwpEbGdrcN5Y29ycA
is_a: UBERON:0001744 ! lymphoid tissue
relationship: part_of UBERON:0001735 ! tonsillar ring
[Term]
id: UBERON:0002373
name: palatine tonsil
alt_id: UBERON:FMA_9610-MA_0000775-MIAA_0000291
def: "tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]." [Wikipedia:Palatine_tonsil]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "faucial tonsil" EXACT []
xref: EFO:0001977
xref: FMA:9610
xref: HOG:0001140
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Illu_mouth.jpg/200px-Illu_mouth.jpg
xref: MA:0000775
xref: MAT:0000291
xref: MIAA:0000291
xref: ncithesaurus:Palatine_Tonsil
is_a: UBERON:0002372 ! tonsil
[Term]
id: UBERON:0002374
name: metacarpal bone
alt_id: UBERON:FMA_9612-MA_0000302
def: "The metacarpus is the intermediate part of the hand skeleton that is located between the phalanges (bones of the fingers) distally and the carpus which forms the connection to the forearm. The metacarpus consists of metacarpal bones. The metacarpals form a transverse arch to which the rigid row of distal carpal bones are fixed. The peripheral metacarpals (those of the thumb and little finger) form the sides of the cup of the palmar gutter and as they are brought together they deepen this concavity. The index metacarpal is the most firmly fixed, while the thumb metacarpal articulates with the trapezium and acts independently from the others. The middle metacarpals are tightly united to the carpus by intrinsic interlocking bone elements at their bases. The ring metacarpal forms a transitional element of the semi-independent last metacarpal. [WP,unvetted]." [Wikipedia:Metacarpal_bone]
subset: uberon_slim
synonym: "fore metapodium" EXACT [AAO:0000946, http://en.wiktionary.org/wiki/metapodial]
synonym: "metacarpal" EXACT []
xref: AAO:0000946
xref: FMA:9612
xref: galen:Metacarpal
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Metacarpals_numbered-en.svg/200px-Metacarpals_numbered-en.svg.png
xref: MA:0000302
xref: ncithesaurus:Metacarpal_Bone
xref: OpenCyc:Mx4rv1Bk45wpEbGdrcN5Y29ycA
is_a: UBERON:0003821 ! metacarpal/metatarsal bone
is_a: UBERON:0005897 ! implied link automatically realized ! hand bone
relationship: part_of UBERON:0004453 ! metacarpus
[Term]
id: UBERON:0002375
name: cricoid cartilage
alt_id: UBERON:FMA_9615-MA_0001762
def: "The cricoid cartilage, or simply cricoid (from the Greek krikoeides meaning 'ring-shaped'), is the only complete ring of cartilage around the trachea. [WP,unvetted]." [Wikipedia:Cricoid_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0000675
xref: EHDAA:9393
xref: EHDAA2:0000326
xref: FMA:9615
xref: GAID:110
xref: HOG:0001308
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/Gray1194.png/200px-Gray1194.png
xref: MA:0001762
xref: ncithesaurus:Cricoid_Cartilage
is_a: UBERON:0001739 ! laryngeal cartilage
[Term]
id: UBERON:0002376
name: muscle of head
alt_id: UBERON:FMA_9616-MA_0000578-ZFA_0000328
def: "Muscle organ which is a part of the head. Examples: masseter, orbicularis oculi." []
comment: TODO - check ZFA
subset: uberon_slim
synonym: "adult head muscle organ" EXACT [OBOL:automatic]
synonym: "cephalic musculature" EXACT []
synonym: "head muscle" EXACT []
synonym: "head muscle organ" EXACT [OBOL:automatic]
synonym: "head muscles" RELATED []
synonym: "muscle organ of adult head" EXACT [OBOL:automatic]
synonym: "muscle organ of head" EXACT [OBOL:automatic]
synonym: "musculus caput" EXACT []
xref: BTO:0000021
xref: FMA:9616
xref: MA:0000578
xref: TAO:0000328
xref: WBbt:0006761
xref: ZFA:0000328
xref: ZFA:0001652
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0000033
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0002377
name: muscle of neck
alt_id: UBERON:FMA_9617-MA_0000587
def: "Muscle organ which is a part of the neck. Examples: platysma, sternocleidomastoid, cricothyroid muscle." []
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "muscle organ of neck" EXACT [OBOL:automatic]
synonym: "muscle organ of neck (volume)" EXACT [OBOL:automatic]
synonym: "neck (volume) muscle organ" EXACT [OBOL:automatic]
synonym: "neck muscle" EXACT []
synonym: "neck muscle organ" EXACT [OBOL:automatic]
xref: FMA:9617
xref: GAID:149
xref: MA:0000587
xref: ncithesaurus:Neck_Muscle
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0000974
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0002378
name: muscle of abdomen
alt_id: UBERON:FMA_9620-MA_0000520
def: "Muscle (organ) which is a part of the abdomen. Examples: external oblique, rectus abdominis." [Wikipedia:Abdominal_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "abdomen muscle" EXACT []
synonym: "abdomen muscle organ" EXACT [OBOL:automatic]
synonym: "abdominal muscle" EXACT []
synonym: "abdominal wall muscle" EXACT []
synonym: "muscle organ of abdomen" EXACT [OBOL:automatic]
xref: BTO:0001261
xref: FMA:9620
xref: GAID:89
xref: MA:0000520
xref: ncithesaurus:Abdominal_Muscle
xref: OpenCyc:Mx4rvlygNJwpEbGdrcN5Y29ycA
is_a: UBERON:0001774 ! muscle of trunk
is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ
relationship: part_of UBERON:0000916
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0002379
name: perineal muscle
alt_id: UBERON:FMA_9623-MA_0000538
def: "A muscle organ that is part of a perineum [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "muscle of perineum" EXACT []
synonym: "muscle organ of perineal region" EXACT [OBOL:automatic]
synonym: "muscle organ of perineum" EXACT [OBOL:automatic]
synonym: "perineal region muscle organ" EXACT [OBOL:automatic]
synonym: "perineum muscle organ" EXACT [OBOL:automatic]
xref: FMA:9623
xref: MA:0000538
xref: ncithesaurus:Perineal_Muscle
is_a: UBERON:0001325 ! muscle of pelvis
relationship: part_of UBERON:0002356
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002356 ! perineum
[Term]
id: UBERON:0002380
name: trapezius
alt_id: UBERON:FMA_9626-MA_0002398
def: "In human anatomy, the trapezius is a large superficial muscle that extends longitudinally from the occipital bone to the lower thoracic vertebrae and laterally to the spine of the scapula (shoulder blade). Its functions are to move the scapulae and support the arm. The trapezius has three functional regions: the superior region (descending part), which supports the weight of the arm; the intermediate region (transverse part), which retracts the scapulae; and the inferior region (ascending part), which medially rotates and depresses the scapulae. [WP,unvetted]." [Wikipedia:Trapezius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "trapezius muscle" EXACT []
xref: FMA:9626
xref: HOG:0000834
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/60/Trapezius.png/200px-Trapezius.png
xref: MA:0002398
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0002381
name: pectoralis major
alt_id: UBERON:FMA_9627-MA_0002354
def: "The pectoralis major is a thick, fan-shaped muscle, situated at the upper front of the chest wall. It makes up the bulk of the chest muscles in the male and lies under the breast in the female. Underneath the pectoralis major is the pectoralis minor, a thin, triangular muscle. [WP,unvetted]." [Wikipedia:Pectoralis_major]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:8311
xref: EHDAA2:0001424
xref: FMA:9627
xref: HOG:0000895
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Pectoralis_major.png/200px-Pectoralis_major.png
xref: MA:0002354
xref: ncithesaurus:Pectoralis_Major
is_a: UBERON:0001495 ! pectoral muscle
[Term]
id: UBERON:0002382
name: rectus abdominis
alt_id: UBERON:FMA_9628-MA_0002364
def: "The rectus abdominis muscle is a paired muscle running vertically on each side of the anterior wall of the human abdomen (and in some other animals). There are two parallel muscles, separated by a midline band of connective tissue called the linea alba (white line). It extends from the pubic symphysis/pubic crest inferiorly to the xiphisternum/xiphoid process and lower costal cartilages (5–7) superiorly. It is contained in the Rectus sheath. The rectus is usually crossed by three fibrous bands licked by the tendinous inscriptions. While the 'sixpack' is by far the most common configuration of the muscle bellies of the rectus, there exist rare anatomic variations which result in the appearance of eight ('eightpack'), ten, or—even rarer—asymmetrically arranged segments. All these variations are functionally equivalent. [WP,unvetted]." [Wikipedia:Rectus_abdominis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:8252
xref: EHDAA2:0001595
xref: FMA:9628
xref: GAID:142
xref: HOG:0000863
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/95/Rectus_abdominis.png/200px-Rectus_abdominis.png
xref: MA:0002364
xref: ncithesaurus:Rectus_Abdominis
is_a: UBERON:0002378 ! muscle of abdomen
[Term]
id: UBERON:0002383
name: supraspinatus
alt_id: UBERON:FMA_9629-MA_0002389
def: "The supraspinatus is a relatively small muscle of the upper limb that takes its name from its origin from the supraspinous fossa superior to the spine of the scapula. It is one of the four rotator cuff muscles and also abducts the arm at the shoulder. The spine of the scapula separates the supraspinatus muscle from the infraspinatus muscle, which originates below the spine. [WP,unvetted]." [Wikipedia:Supraspinatus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:8319
xref: EHDAA2:0001967
xref: FMA:9629
xref: HOG:0000848
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/99/Arm_muscles_back_numbers.png/200px-Arm_muscles_back_numbers.png
xref: MA:0002389
xref: ncithesaurus:Supraspinatus
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0002384
name: connective tissue
alt_id: UBERON:FMA_9640-FMA_9721-MA_0000011-MA_0000115-MIAA_0000301-XAO_0000173-XAO_0001017
def: "Tissue which consists of fibroblasts, osteocytes or chondrocytes and intercellular matrix produced by these cells. Examples: bone (tissue), dense regular elastic tissue, areolar tissue, neuroglia, adipose tissue. // Anatomical entity consisting of tissue that is rich in extracellular matrix (collagen, proteoglycan, etc.) and binds together and is the support of the various structures of the body." [BTO:0000421, OMD:connective+tissue, Wikipedia:Connective_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fascia" RELATED []
synonym: "portion of connective tissue" EXACT []
synonym: "textus connectivus" EXACT []
xref: AAO:0000098
xref: BTO:0000421
xref: EFO:0000952
xref: FMA:9640
xref: GAID:100
xref: galen:ConnectiveTissue
xref: MA:0000011
xref: MAT:0000301
xref: MIAA:0000301
xref: ncithesaurus:Connective_Tissue
xref: OpenCyc:Mx4rv-aBgZwpEbGdrcN5Y29ycA
xref: XAO:0001017
xref: ZFA:0001632
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0002385
name: muscle tissue
alt_id: UBERON:FMA_9641-MA_0002437
def: "Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, https://sourceforge.net/tracker/index.php?func=detail&aid=2801266&group_id=36855&atid=440764, Wikipedia:Muscle_tissue]
comment: Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/ cardiac and visceral. Here we take a cell type based approach.
subset: uberon_slim
synonym: "muscle tissue" EXACT SENSU []
synonym: "textus muscularis" EXACT []
xref: AAO:0000306
xref: AEO:0000122
xref: EHDAA2:0003122
xref: FMA:9641
xref: galen:MuscleTissue
xref: MA:0002437
xref: ncithesaurus:Muscle_Tissue
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0001015 ! musculature
[Term]
id: UBERON:0002386
name: forelimb zeugopod
alt_id: UBERON:FMA_9663-MA_0000034
def: "distal region of the upper limb, between the elbow and the wrist." [Wikipedia:Forearm]
subset: uberon_slim
synonym: "antebrachial region" EXACT []
synonym: "arm middle limb segment" EXACT [OBOL:automatic]
synonym: "arm zeugopod" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "forearm" EXACT []
synonym: "forelimb zeugopodium" EXACT []
synonym: "intermediate segment of free upper limb" EXACT []
synonym: "lower arm" EXACT []
synonym: "lower segment of arm" EXACT []
synonym: "middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "zeugopod of arm" EXACT []
synonym: "zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "zeugopod of forelimb" EXACT []
synonym: "zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
xref: BTO:0001447
xref: EHDAA:4172
xref: EHDAA:6218
xref: EHDAA2:0000553
xref: FMA:9663
xref: GAID:55
xref: galen:Forearm
xref: HOG:0000341
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Forearm_labeled.png/200px-Forearm_labeled.png
xref: MA:0000034
xref: ncithesaurus:Forearm
xref: OpenCyc:Mx4rvVjnmpwpEbGdrcN5Y29ycA
is_a: UBERON:0002471 ! implied link automatically realized ! zeugopod
relationship: part_of UBERON:0002102
intersection_of: UBERON:0002471 ! zeugopod
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0002387
name: foot
alt_id: UBERON:FMA_9664-MA_0000044
def: "The foot is an anatomical structure found in many vertebrates. It is the terminal portion of a limb which bears weight and allows locomotion. In many animals with feet, the foot is a separate organ at the terminal part of the leg made up of one or more segments or bones, generally including claws or nails. [WP,unvetted]." [Wikipedia:Foot]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "autopod of hind limb" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "autopod of inferior member" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb autopod" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "hind paw" NARROW SENSU [EMAPA:17428, OBOL:automatic]
synonym: "hind-paw" NARROW SENSU [EMAPA:17428]
synonym: "hindlimb autopod" EXACT [OBOL:automatic]
synonym: "hindlimb autopodium" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "inferior member autopod" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "lower extremity autopod" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb" EXACT []
xref: BTO:0000476
xref: EHDAA2:0000546
xref: EMAPA:17459
xref: FMA:9664
xref: GAID:40
xref: galen:Foot
xref: HOG:0000350
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Male_Right_Foot_1.jpg/200px-Male_Right_Foot_1.jpg
xref: MA:0000044
xref: ncithesaurus:Foot
xref: OpenCyc:Mx4rvVi-k5wpEbGdrcN5Y29ycA
is_a: UBERON:0002470 ! autopod
relationship: part_of UBERON:0002103
intersection_of: UBERON:0002470 ! autopod
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0002388
name: ankle
alt_id: UBERON:FMA_9665-MA_0000043
def: "In human anatomy, the ankle joint is formed where the foot and the leg meet. The ankle, or talocrural joint, is a synovial hinge joint that connects the distal ends of the tibia and fibula in the lower limb with the proximal end of the talus bone in the foot. The articulation between the tibia and the talus bears more weight than between the smaller fibula and the talus. The term 'ankle' is used to describe structures in the region of the ankle joint proper. [WP,unvetted]." [Wikipedia:Ankle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EFO:0001409
xref: FMA:9665
xref: GAID:41
xref: galen:Ankle
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Ankle_en.svg/200px-Ankle_en.svg.png
xref: MA:0000043
xref: OpenCyc:Mx4rvVi-R5wpEbGdrcN5Y29ycA
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0002389
name: finger
alt_id: UBERON:0000028
alt_id: UBERON:FMA_9666-MA_0000041
def: "Subdivision of the hand demarcated from the hand proper by the skin crease in line with the distal edge of finger webs. Examples: thumb, right middle finger, left little finger [FMA]. A digit found on the hands of humans and other primates used for manipulation and sensation [Wikipedia]." [Wikipedia:Finger]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arm autopod digit" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment digit" EXACT [OBOL:automatic]
synonym: "autopod of arm digit" EXACT [OBOL:automatic]
synonym: "autopod of brachial region digit" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "brachial region autopod digit" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment digit" EXACT [OBOL:automatic]
synonym: "digit of arm autopod" EXACT [OBOL:automatic]
synonym: "digit of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "digit of autopod of arm" EXACT [OBOL:automatic]
synonym: "digit of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "digit of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "digit of brachial region autopod" EXACT [OBOL:automatic]
synonym: "digit of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "digit of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "digit of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "digit of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "digit of hand" EXACT []
synonym: "digit of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "digit of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "digitus manus" EXACT []
synonym: "distal free limb segment of arm digit" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region digit" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "fore digit" EXACT [AAO:0000857, XAO:0003036]
synonym: "hand digit" EXACT []
synonym: "proximal segment of free upper limb autopod digit" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment digit" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit" EXACT [OBOL:automatic]
xref: AAO:0000857
xref: FMA:9666
xref: GAID:57
xref: galen:Finger
xref: MA:0000041
xref: ncithesaurus:Finger
xref: NIF_GrossAnatomy:nlx_anat_20090602
xref: OpenCyc:Mx4rvVi_f5wpEbGdrcN5Y29ycA
xref: XAO:0003036
is_a: UBERON:0002544 ! implied link automatically realized ! digit
relationship: part_of UBERON:0002102
intersection_of: UBERON:0002544 ! digit
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0002390
name: hematopoietic system
alt_id: UBERON:FMA_9667-MA_0002434-MIAA_0000022-XAO_0000122-ZFA_0005023
def: "The tissues concerned in production of the blood, including the bone marrow, liver, lymph nodes, spleen, and thymus[BTO]. Anatomical system that consists of the blood and blood forming tissues. The bodily system of organs and tissues, primarily the bone marrow, spleen, tonsils, and lymph nodes, involved in the production of blood[FD]." [BTO:0000570, http://www.thefreedictionary.com/hematopoietic+system, OMD:haematological, Wikipedia:Hematopoietic_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "haematological system" EXACT []
synonym: "haematopoietic system" RELATED []
synonym: "haemopoietic system" EXACT []
synonym: "hematological system" RELATED []
synonym: "hematolymphoid system" RELATED []
synonym: "hemopoietic system" RELATED []
synonym: "organa haemopoietica" EXACT []
xref: BTO:0000570
xref: EFO:0000798
xref: FMA:9667
xref: GAID:1008
xref: HOG:0001624
xref: MA:0002434
xref: MAT:0000022
xref: MIAA:0000022
xref: ncithesaurus:Hematopoietic_System
xref: TAO:0005023
xref: XAO:0000122
xref: ZFA:0005023
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: part_of UBERON:0002193 ! hemolymphoid system
[Term]
id: UBERON:0002391
name: lymph
alt_id: UBERON:FMA_9671-MA_0002520-MIAA_0000055
def: "Transudate contained in the lumen of lymphatic vessel (FMA). Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system (wikipedia)." [Wikipedia:Lymph]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000855
xref: EFO:0000871
xref: ENVO:02000041
xref: FMA:9671
xref: GAID:1186
xref: galen:Lymph
xref: MA:0002520
xref: MAT:0000055
xref: MIAA:0000055
xref: ncithesaurus:Lymph
xref: OpenCyc:Mx4rvpDOU5wpEbGdrcN5Y29ycA
is_a: UBERON:0000179 ! haemolymphatic fluid
relationship: develops_from UBERON:0000913 ! interstitial fluid
[Term]
id: UBERON:0002392
name: nasolacrimal duct
alt_id: UBERON:FMA_9703-MA_0001299
def: "The nasolacrimal duct (sometimes called tear duct) carries tears from the lacrimal sac into the nasal cavity. Excess tears flow through nasolacrimal duct which opens in the nose. This is the reason the nose starts to run when a person is crying or has watery eyes from an allergy, and why one can sometimes taste eye drops. Like the lacrimal sac, the duct is lined by stratified columnar epithelium containing mucus-secreting goblet cells, and is surrounded by connective tissue. Obstruction of the nasolacrimal duct leads to the excess overflow of tears called epiphora. A congenital obstruction can cause cystic expansion of the duct and is called a dacrocystocele or Timo cyst. Persons with dry eye conditions can be fitted with punctal plugs that seal the ducts to limit the amount of fluid drainage and retain moisture. The canal containing the nasolacrimal duct is called the nasolacrimal canal. [WP,unvetted]." [Wikipedia:Nasolacrimal_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:7849
xref: EHDAA:9094
xref: EHDAA2:0001237
xref: FMA:9703
xref: GAID:902
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray896.png/200px-Gray896.png
xref: MA:0001299
xref: ncithesaurus:Nasolacrimal_Duct
xref: OpenCyc:Mx4rv6PJy5wpEbGdrcN5Y29ycA
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0001850 ! lacrimal duct
[Term]
id: UBERON:0002393
name: pharyngotympanic tube
alt_id: UBERON:FMA_9705-MA_0000255-XAO_0000213
def: "Organ with organ cavity which connects the cavity of the middle ear to the cavity of the pharynx. Examples: There are only two pharyngotympanic tubes, the right and the left pharyngotympanic tubes." [Wikipedia:Pharyngotympanic_tube]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "auditory tube" EXACT []
synonym: "eustachian tube" RELATED []
synonym: "internal auditory tube" EXACT []
xref: FMA:9705
xref: GAID:869
xref: HOG:0001145
xref: MA:0000255
xref: ncithesaurus:Eustachian_Tube
xref: XAO:0000213
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001756 ! middle ear
[Term]
id: UBERON:0002394
name: bile duct
alt_id: UBERON:FMA_9706-MA_0000354-XAO_0000134
def: "Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
comment: TODO - MA distinguishes between bile duct, hepatic duct and common hepatic duct. in FMA hepatic and common are the same.
subset: uberon_slim
synonym: "biliary duct" EXACT []
synonym: "hepatic duct" RELATED []
xref: BTO:0000122
xref: EHDAA2:0000741
xref: FMA:9706
xref: GAID:280
xref: HOG:0000212
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png
xref: MA:0000354
xref: ncithesaurus:Bile_Duct
xref: OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA
xref: XAO:0000134
is_a: UBERON:0000058 ! duct
is_a: UBERON:0003928 ! implied link automatically realized ! digestive system duct
relationship: transports UBERON:0001970
intersection_of: UBERON:0000058 ! duct
intersection_of: transports UBERON:0001970 ! bile
relationship: develops_from UBERON:0004912 ! biliary bud
relationship: part_of UBERON:0002294 ! biliary system
[Term]
id: UBERON:0002395
name: talus
alt_id: UBERON:FMA_9708-MA_0001351
def: "." [Wikipedia:Talus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "astragalus" RELATED []
xref: BTO:0002354
xref: FMA:9708
xref: GAID:196
xref: galen:Talus
xref: MA:0001351
xref: ncithesaurus:Talus
is_a: UBERON:0001447 ! tarsal bone
[Term]
id: UBERON:0002396
name: vomer
alt_id: UBERON:FMA_9710-MA_0001496
def: "The vomer is one of the unpaired facial bones of the skull. It is located in the midsagittal line, and articulates with the sphenoid, the ethmoid, the left and right palatine bones, and the left and right maxillary bones. [WP,unvetted]." [Wikipedia:Vomer]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vomer bone" EXACT []
xref: AAO:0000633
xref: FMA:9710
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/77/Illu_facial_bones.jpg/200px-Illu_facial_bones.jpg
xref: MA:0001496
xref: ncithesaurus:Vomer
xref: OpenCyc:Mx4rv6jKWZwpEbGdrcN5Y29ycA
xref: ZFA:0000308
is_a: UBERON:0000062 ! organ
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0002397
name: maxilla
alt_id: UBERON:FMA_9711-MA_0001491-ZFA_0000270
def: "Bone of upper jaw[Obol]. Paired, intramembranous bone located on the lateral sides of the skull, posterior to the premaxillae[AAO]. The dermal maxilla forms part of the upper jaw. It is first visible as a small dorsoventrally oriented rod of bone in the lateral region of the upper jaw. Through anterior ossification it becomes S-shaped, with its anteriormost tip directed medially (4.8 mm NL). The posteroventral end of the maxilla is connected to the dentary by a ligament. Maxillary teeth are absent in cypriniforms, but are present in other ostariophysans. . Two barbels are present on the maxilla. The presence of two pairs of maxillary barbels is considered by Cavender and Coburn (1992) to be the primitive condition for the Cyprinidae." [Wikipedia:Maxilla, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "maxillae" RELATED []
synonym: "upper jaw bone" EXACT []
xref: AAO:0000285
xref: EHDAA:8043
xref: EHDAA2:0001068
xref: FMA:9711
xref: GAID:220
xref: galen:Maxilla
xref: HOG:0001021
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Gray189.png/200px-Gray189.png
xref: MA:0001491
xref: ncithesaurus:Maxilla
xref: TAO:0000270
xref: ZFA:0000270
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone
relationship: adjacent_to UBERON:0002244
relationship: part_of UBERON:0001709
intersection_of: UBERON:0001474 ! bone
intersection_of: adjacent_to UBERON:0002244 ! premaxilla
intersection_of: part_of UBERON:0001709 ! upper jaw
relationship: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0002398
name: hand
alt_id: UBERON:FMA_9712-MA_0000037
def: "The hands are the two intricate, prehensile, multi-fingered body parts normally located at the end of each arm of a primate. They are the chief organs for physically manipulating the environment, used for both gross motor skills (such as grasping a large object) and fine motor skills (such as picking up a small pebble). The fingertips contain some of the densest areas of nerve endings on the body, are the richest source of tactile feedback, and have the greatest positioning capability of the body; thus the sense of touch is intimately associated with hands. Like other paired organs (eyes, ears, legs), each hand is dominantly controlled by the opposing brain hemisphere, and thus handedness, or preferred hand choice for single-handed activities such as writing with a pen, reflects a significant individual trait. Some evolutionary anatomists use hand to refer more generally to the appendage of digits on the forelimb, for example, in the context of whether the three digits of the bird hand involved the same homologous loss of two digits as in the dinosaur hand. [WP,unvetted]." [Wikipedia:Hand]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arm autopod" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "autopod of arm" EXACT [OBOL:automatic]
synonym: "autopod of brachial region" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "brachial region autopod" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "fore paw" NARROW SENSU [EMAPA:17428, OBOL:automatic]
synonym: "fore-paw" NARROW SENSU [EMAPA:17428]
synonym: "forelimb autopod" EXACT [OBOL:automatic]
synonym: "forelimb autopodium" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb" EXACT []
xref: EHDAA2:0000728
xref: EMAPA:17428
xref: FMA:9712
xref: GAID:56
xref: galen:Hand
xref: HOG:0000344
xref: MA:0000037
xref: ncithesaurus:Hand
xref: NIF_GrossAnatomy:nlx_anat_20090603
xref: OpenCyc:Mx4rvViGVZwpEbGdrcN5Y29ycA
is_a: UBERON:0002470 ! implied link automatically realized ! autopod
relationship: part_of UBERON:0002102
intersection_of: UBERON:0002470 ! autopod
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0002399
name: lesser omentum
alt_id: UBERON:FMA_9715-MA_0001623
def: "The lesser omentum (small omentum; gastrohepatic omentum) is the double layer of peritoneum that extends from the liver to the lesser curvature of the stomach and the start of the duodenum. [WP,unvetted]." [Wikipedia:Lesser_omentum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:4858
xref: EHDAA2:0000991
xref: FMA:9715
xref: HOG:0000357
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Gray984.png/200px-Gray984.png
xref: MA:0001623
xref: ncithesaurus:Lesser_Omentum
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001178 ! visceral peritoneum
[Term]
id: UBERON:0002400
name: parietal pleura
alt_id: UBERON:FMA_9733-MA_0002488
def: "Parietal serous membrane which is continuous with the visceral pleura and is attached to the dome of the diaphragm." [Wikipedia:Parietal_pleura]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:9733
xref: HOG:0001495
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png
xref: MA:0002488
xref: ncithesaurus:Parietal_Pleura
xref: OpenCyc:Mx4rvv2Uq5wpEbGdrcN5Y29ycA
is_a: UBERON:0000042 ! serous membrane
relationship: part_of UBERON:0000977 ! pleura
[Term]
id: UBERON:0002401
name: visceral pleura
alt_id: UBERON:FMA_9734-MA_0002489
def: "Visceral serous membrane which is continuous with the parietal pleura and is attached to the parenchyma of lobe of lung." [Wikipedia:Visceral_pleura]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pleura visceralis (pulmonalis)" EXACT []
synonym: "pulmonary pleura" EXACT []
xref: FMA:9734
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png
xref: MA:0002489
xref: ncithesaurus:Visceral_Pleura
xref: OpenCyc:Mx4rwNFqppwpEbGdrcN5Y29ycA
is_a: UBERON:0000042 ! serous membrane
relationship: part_of UBERON:0000977 ! pleura
[Term]
id: UBERON:0002402
name: pleural cavity
alt_id: UBERON:FMA_9740-MA_0000055
def: "Cavity of serous sac surropunded by the pleura." [Wikipedia:Pleural_cavity]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA2:0001475
xref: FMA:9740
xref: GAID:95
xref: HOG:0000581
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Gray965.png/200px-Gray965.png
xref: MA:0000055
xref: ncithesaurus:Pleural_Cavity
xref: OpenCyc:Mx4rwCKAppwpEbGdrcN5Y29ycA
is_a: UBERON:0002323 ! body cavity
[Term]
id: UBERON:0002403
name: internal intercostal muscle
alt_id: UBERON:FMA_9757-MA_0002326
def: "Intercostal muscles are several groups of muscles that run between the ribs, and help form and move the chest wall. There are three principal layers; the external intercostal muscles, which aid in quiet and forced inhalation. They originate on ribs 1-11 and have their insertion on ribs 2-12. The external intercostals are responsible for the elevation of the ribs, and expanding the transverse dimensions of the thoracic cavity. Located around the ribs the internal intercostal muscles, which aid in forced expiration (quiet expiration is a passive process). They originate on ribs 2-12 and have their insertions on ribs 1-11. The internal intercostals are responsible for the depression of the ribs decreasing the transverse dimensions of the thoracic cavity. the innermost intercostal muscle, the deep layers of the internal intercostal muscles which are separated from them by the neurovascular bundle. Both the external and internal muscles are innervated by the intercostal nerves, and are provided by the intercostal arteries and intercostal veins. Their fibers run in opposite directions. [WP,unvetted]." [Wikipedia:Internal_intercostal_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intercostal muscle internal layer" RELATED []
synonym: "intercostales internus" EXACT []
xref: EHDAA2:0000875
xref: FMA:9757
xref: HOG:0000905
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray411.png/200px-Gray411.png
xref: MA:0002326
xref: ncithesaurus:Internal_Intercostal_Muscle
xref: OpenCyc:Mx4rvlj6HZwpEbGdrcN5Y29ycA
is_a: UBERON:0001111 ! intercostal muscle
[Term]
id: UBERON:0002404
name: transversus thoracis
alt_id: UBERON:FMA_9760-MA_0002397
def: "The tranversus thoracis lies internal to the thoracic cage, anteriorly. It is a thin plane of muscular and tendinous fibers, situated upon the inner surface of the front wall of the chest. It is in the same layer as the subcostal muscles. It arises on either side from the lower third of the posterior surface of the body of the sternum, from the posterior surface of the xiphoid process, and from the sternal ends of the costal cartilages of the lower three or four true ribs. Its fibers diverge upward and lateralward, to be inserted by slips into the lower borders and inner surfaces of the costal cartilages of the second, third, fourth, fifth, and sixth ribs. The lowest fibers of this muscle are horizontal in their direction, and are continuous with those of the Transversus abdominis; the intermediate fibers are oblique, while the highest are almost vertical. This muscle varies in its attachments, not only in different subjects, but on opposite sides of the same subject. [WP,unvetted]." [Wikipedia:Transversus_thoracis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:9760
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ef/Transversus_thoracis.png/200px-Transversus_thoracis.png
xref: MA:0002397
xref: ncithesaurus:Transversus_Thoracis
is_a: UBERON:0002426 ! chest muscle
[Term]
id: UBERON:0002405
name: immune system
alt_id: UBERON:FMA_9825-MA_0002711-XAO_0003152-ZFA_0001159
def: "Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies." [NLM:immune+system, Wikipedia:Immune_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BILA:0000104
xref: FMA:9825
xref: GAID:328
xref: HOG:0001247
xref: MA:0002711
xref: ncithesaurus:Immune_System
xref: OpenCyc:Mx4rvWNkm5wpEbGdrcN5Y29ycA
xref: TAO:0001159
xref: XAO:0003152
xref: ZFA:0001159
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
[Term]
id: UBERON:0002406
name: pericardial sac
alt_id: UBERON:FMA_9868-ZFA_0000054
def: "Serous sac, which has as parts the serous pericardium and the pericardial cavity . Examples: There is only one pericardial sac." [Wikipedia:Pericardial_sac]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pericardium" RELATED []
xref: EHDAA2:0001443
xref: FMA:9868
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png
xref: TAO:0000054
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001009 ! circulatory system
relationship: part_of UBERON:0002407 ! pericardium
[Term]
id: UBERON:0002407
name: pericardium
alt_id: UBERON:FMA_9869-MA_0000099
def: "Organ cluster which has as its parts the fibrous pericardium and the pericardial sac." [Wikipedia:Pericardium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000717
xref: EFO:0000820
xref: EHDAA:5376
xref: EHDAA2:0001443
xref: FMA:9869
xref: GAID:569
xref: galen:Pericardium
xref: HOG:0001280
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png
xref: MA:0000099
xref: MAT:0000454
xref: ncithesaurus:Pericardium
xref: OpenCyc:Mx4rvoCLgJwpEbGdrcN5Y29ycA
xref: ZFA:0000054
is_a: UBERON:0004457 ! cavity lining
relationship: part_of UBERON:0004535 ! cardiovascular system
[Term]
id: UBERON:0002408
name: parietal serous pericardium
alt_id: UBERON:FMA_9870-MA_0000483
def: "Parietal serous membrane which is continuous with the visceral serous pericardium and is attached to the central tendon of diaphragm." [Wikipedia:Parietal_pericardium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lamina parietalis (pericardii serosum)" EXACT []
synonym: "parietal layer of serous pericardium" EXACT []
synonym: "parietal pericardium" EXACT []
xref: EHDAA:3422
xref: EHDAA:5378
xref: FMA:9870
xref: HOG:0000537
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Gray489.png/200px-Gray489.png
xref: MA:0000483
is_a: UBERON:0000042 ! serous membrane
relationship: part_of UBERON:0002357 ! serous pericardium
[Term]
id: UBERON:0002409
name: pericardial fluid
alt_id: UBERON:FMA_9887-MA_0002530
def: "Transudate contained in the pericardial cavity." [Wikipedia:Pericardial_fluid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001016
xref: FMA:9887
xref: MA:0002530
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0002410
name: autonomic nervous system
alt_id: UBERON:FMA_9905-MA_0000219-ZFA_0001574
def: "The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands[GO]." [Wikipedia:Autonomic_nervous_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ANS" RELATED []
synonym: "visceral nervous system" EXACT []
xref: AAO:0000033
xref: BTO:0002507
xref: EHDA:10095
xref: FMA:9905
xref: GAID:706
xref: HOG:0000396
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f7/Gray839.png/200px-Gray839.png
xref: MA:0000219
xref: ncithesaurus:Autonomic_Nervous_System
xref: NIF_GrossAnatomy:birnlex_1123
xref: TAO:0001574
xref: ZFA:0001574
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0000010 ! peripheral nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002411
name: clitoris
alt_id: UBERON:FMA_9909-MA_0000382
def: "The clitoris is a sexual organ that is present only in female mammals. In humans, the visible button-like portion is located near the anterior junction of the labia minora, above the opening of the urethra and vagina. Unlike the penis, which is homologous to the clitoris, the clitoris does not contain the distal portion of the urethra. The only known exception to this is in the Spotted Hyena. In this species, the urogenital system is unique in that the female urinates, mates and gives birth via an enlarged, erectile clitoris, known as a pseudo-penis. In humans, the clitoris is the most sensitive erogenous zone of a woman, the stimulation of which may produce sexual excitement and clitoral erection; its continuing stimulation may produce sexual pleasure in the woman and orgasm. [WP,unvetted]." [Wikipedia:Clitoris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0002020
xref: EHDAA:9360
xref: EHDAA2:0000255
xref: FMA:9909
xref: GAID:385
xref: galen:Clitoris
xref: HOG:0000700
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Clitoris_anatomy_labeled-en.svg/200px-Clitoris_anatomy_labeled-en.svg.png
xref: MA:0000382
xref: ncithesaurus:Clitoris
xref: OpenCyc:Mx4rvVjr6ZwpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: develops_from UBERON:0005876 ! genital tubercle
relationship: part_of UBERON:0000997 ! vulva
[Term]
id: UBERON:0002412
name: vertebra
alt_id: UBERON:FMA_9914-MA_0000309-ZFA_0001189
def: "Irregular bone that articulates with other vertebrae, or with one other vertebra and the skull or the sacrum // All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988)." [Wikipedia:Vertebra, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0000691
xref: EFO:0001371
xref: FMA:9914
xref: galen:Vertebra
xref: HOG:0001143
xref: MA:0000309
xref: ncithesaurus:Vertebra
xref: OpenCyc:Mx4rvt2Dh5wpEbGdrcN5Y29ycA
xref: TAO:0001189
xref: ZFA:0001189
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004247 ! implied link automatically realized ! back bone
relationship: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0002413
name: cervical vertebra
alt_id: UBERON:FMA_9915-MA_0000311-XAO_0003076
def: "A vertebra immediately inferior to the skull[WP]." [Wikipedia:Cervical_vertebra]
comment: In some species, some parts of the skull may be composed of vertebra-like elements, e.g. the occipital bone in humans is composed of four vertebra-like segments. In many vertebrate species, cervical vertebrae are variable in number; however, almost all mammals have seven (including those with very short necks relative to body size, such as elephants or whales, and those with very long necks, such as giraffes). The few exceptions include the manatee and the sloths, of which the two-toed sloth has six cervical vertebrae and the three-toed sloth has up to nine cervical vertebrae. In many species, though not in mammals, the cervical vertebrae bear ribs. In many other groups, such as lizards and saurischian dinosaurs, the cervical ribs are large; in birds they are small and completely fused to the vertebrae. The transverse processes of mammals are homologous to the cervical ribs of other amniotes. Thoracic vertebrae in all species are defined as those vertebrae which also carry a pair of ribs, and lie caudal to the cervical vertebrae. n humans, cervical vertebrae are the smallest of the true vertebrae, and can be readily distinguished from those of the thoracic or lumbar regions by the presence of a foramen (hole) in each transverse process, through which passes the vertebral artery.
subset: uberon_slim
synonym: "cervical vertebrae" EXACT PLURAL []
xref: FMA:9915
xref: GAID:235
xref: galen:CervicalVertebra
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Illu_vertebral_column.jpg/200px-Illu_vertebral_column.jpg
xref: MA:0000311
xref: ncithesaurus:Cervical_Vertebra
xref: XAO:0003076
is_a: UBERON:0002412 ! vertebra
is_a: UBERON:0003458 ! implied link automatically realized ! neck bone
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0002414
name: lumbar vertebra
alt_id: UBERON:FMA_9921-MA_0000312
def: "Large vertebra of the movable part of the vertebral column, characterized by the absence of the foramen transversarium within the transverse process, and by the absence of facets on the sides of the body." [Wikipedia:Lumbar_vertebra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:9921
xref: GAID:240
xref: galen:LumbarVertebra
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c8/Gray93.png/200px-Gray93.png
xref: MA:0000312
xref: ncithesaurus:Lumbar_Vertebra
xref: OpenCyc:Mx4rvaOek5wpEbGdrcN5Y29ycA
is_a: UBERON:0002412 ! vertebra
[Term]
id: UBERON:0002415
name: tail
alt_id: UBERON:MA_0000008-MIAA_0000094-WBbt_0005741-XAO_0003026-ZFA_0001117
def: "section at the rear end of an animal's body; in general, the term refers to a distinct, flexible appendage to the torso[WP]." [ISBN:0471209627, OMD:tail, WB:rynl, Wikipedia:Tail, ZFIN:curator]
comment: currently defined very generally, inclusive of caudal fin
subset: uberon_slim
synonym: "post-vent region" EXACT []
xref: AEO:0000109
xref: BILA:0000117
xref: BTO:0001348
xref: EFO:0000963
xref: EHDAA:9198
xref: EHDAA2:0003109
xref: GAID:1245
xref: MA:0000008
xref: MAT:0000094
xref: MIAA:0000094
xref: OpenCyc:Mx4rvVjiC5wpEbGdrcN5Y29ycA
xref: WBbt:0005741
xref: XAO:0003026
xref: ZFA:0001058
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0002416
name: integumental system
alt_id: UBERON:MA_0000014-FMA_72979
def: "organ system that protects the body from damage, comprising the skin and its appendages (including hair, scales, and nails). The integumentary system has a variety of functions; it may serve to waterproof, cushion and protect the deeper tissues, excrete wastes, regulate temperature and is the location of receptors for pain, sensation, pressure and temperature. In humans the integumentary system additionally provides vitamin D synthesis[WP]." [Wikipedia:Integumentary_system]
comment: in FMA, integumentary system = integument + certain glands
synonym: "integumentary system" EXACT [FMA:72979]
xref: EFO:0000807
xref: EHDAA:6520
xref: EHDAA2:0000836
xref: EMAPA:17524
xref: FMA:72979
xref: HOG:0000403
xref: MA:0000014
xref: MAT:0000033
xref: XAO:0000176
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002423 ! hepatobiliary system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0002417
name: abdominal segment of trunk
alt_id: UBERON:MA_0000021-FMA_259211
synonym: "abdomen/pelvis/perineum" RELATED [MA:0000021]
synonym: "lower body" RELATED [MA:0000021]
xref: FMA:259211
xref: MA:0000021
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0002418
name: cartilage
alt_id: UBERON:MA_0000104-MIAA_0000189-XAO_0000170
def: "A portion of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate[GO]. Regular connective tissue, which consists of chondrocytes and related cells, the intercellular matrix of which is chondrified. Examples: hyaline cartilage, fibrocartilage, elastic cartilage[FMA]. an avascular supporting and articular skeletal tissue. It also functions as the primary endoskeletal support in vertebrate embryos. Cartilage is deposited by and is composed of chondroblasts and chondrocytes separated by an extracellular matrix, which may or may not mineralize depending on cartilage type, age, or taxon[Hall and Witten]." [FMA:37377, GO:0051216, Wikipedia:Cartilage]
comment: see also FMA:71500 Set of cartilages, FMA:55107 Cartilage organ, FMA:12264 Articular cartilage. // elements made from cartilage, cartilage-like, or chondroid tissues evolved in invertebrates[H&W]
subset: uberon_slim
synonym: "cartilage tissue" EXACT [FMA:37377]
synonym: "cartilaginous tissue" EXACT []
xref: AAO:0000060
xref: AEO:0000087
xref: BTO:0000206
xref: EFO:0000949
xref: EHDAA2:0003087
xref: FMA:37377
xref: GAID:99
xref: galen:Cartilage
xref: HOG:0001207
xref: MA:0000104
xref: MAT:0000189
xref: MIAA:0000189
xref: ncithesaurus:Cartilage
xref: OpenCyc:Mx4rvVjeOZwpEbGdrcN5Y29ycA
xref: TAO:0001501
xref: XAO:0000170
xref: ZFA:0001501
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004755 ! skeletal tissue
relationship: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0002419
name: skin gland
alt_id: UBERON:MA_0000146-FMA_71878
def: "A gland that is part of a skin of body [Obol]." [OBOL:automatic]
comment: check FMA, use plural for now as general class not there
synonym: "skin glands" RELATED PLURAL []
synonym: "skin glands set" RELATED PLURAL []
xref: FMA:71878
xref: MA:0000146
is_a: UBERON:0003297 ! implied link automatically realized ! gland of integumental system
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002097
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0002420
name: basal ganglion
def: "one of a group of nuclei in the brains of vertebrates, situated at the base of the forebrain and strongly connected with the cerebral cortex, thalamus and other areas.ganglion in the head. The main components of the basal ganglia are the striatum, pallidum, substantia nigra, and subthalamic nucleus[WP]. Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF]." [Wikipedia:Basal_ganglia]
comment: TODO: is a basal ganglion really a ganglion? See definition of ganglion. Not a subclass of ganglion in FMA.
subset: uberon_slim
synonym: "basal ganglia" RELATED PLURAL []
synonym: "basal ganglion of telencephalon" EXACT []
synonym: "basal nucleus" RELATED []
synonym: "basasl nucleus" BROAD []
xref: BTO:0000235
xref: EFO:0000904
xref: FMA:62514
xref: GAID:617
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Basal_Ganglia_and_Related_Structures.svg/200px-Basal_Ganglia_and_Related_Structures.svg.png
xref: MA:0000184
xref: ncithesaurus:Basal_Ganglia
xref: NIF_GrossAnatomy:birnlex_826
is_a: UBERON:0000045 ! ganglion
is_a: UBERON:0003339 ! implied link automatically realized ! ganglion of central nervous system
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0002421
name: hippocampal formation
alt_id: UBERON:MA_0000189-FMA_74038
comment: The term hippocampus is often used synonymously with hippocampal formation which consists of the hippocampus proper or Cornu Ammonis, the dentate gyrus and the subiculum[NIF]
subset: uberon_slim
synonym: "archipallium" RELATED [MA:0000189]
synonym: "hippocampus (crosby)" EXACT []
synonym: "primal cortex" RELATED [MA:0000189]
xref: FMA:74038
xref: MA:0000189
xref: NIF_GrossAnatomy:birnlex_715
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0002422
name: fourth ventricle
alt_id: UBERON:MA_0000196-FMA_78469
def: "The fourth ventricle is an irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space[GO]." [Wikipedia:Fourth_ventricle]
subset: uberon_slim
synonym: "4th ventricle" RELATED [MA:0000196]
xref: BTO:0003426
xref: EHDAA2:0000100
xref: FMA:78469
xref: GAID:610
xref: HOG:0000006
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png
xref: MA:0000196
xref: ncithesaurus:Fourth_Ventricle_of_the_Brain
xref: NIF_GrossAnatomy:birnlex_1256
xref: OpenCyc:Mx4rv-7Q6pwpEbGdrcN5Y29ycA
xref: XAO:0003099
xref: ZFA:0000110
is_a: UBERON:0004086 ! brain ventricle
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0002423
name: hepatobiliary system
alt_id: UBERON:MA_0000324-MIAA_0000024-XAO_0000132-ZFA_0000036
def: "The hepaticobiliary system is responsible for metabolic and catabolic processing of small molecules absorbed from the blood or gut, hormones and serum proteins, detoxification, storage of glycogen, triglycerides, metals and lipid soluble vitamins and excretion of bile. Included are the synthesis of albumin, blood coagulation factors, complement, and specific binding proteins." [GO:0061008, Wikipedia:Hepatobiliary_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hepaticobiliary system" EXACT []
synonym: "liver and biliary system" EXACT []
synonym: "liver/biliary system" RELATED []
xref: EFO:0000800
xref: EHDAA:2189
xref: EHDAA2:0000998
xref: HOG:0000294
xref: MA:0000324
xref: MAT:0000024
xref: MIAA:0000024
xref: ncithesaurus:Hepatobiliary_System
xref: TAO:0000036
xref: XAO:0000132
xref: ZFA:0000036
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0004456 ! entire sense organ system
relationship: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0002424
name: oral epithelium
alt_id: UBERON:MA_0000344-ZFA_0000816
xref: BTO:0001775
xref: EHDAA:2187
xref: EHDAA2:0001325
xref: HOG:0000187
xref: MA:0000344
xref: XAO:0003201
xref: ZFA:0000816
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium
relationship: part_of UBERON:0000166 ! oral opening
[Term]
id: UBERON:0002425
name: visceral serous pericardium
alt_id: UBERON:MA_0000484-FMA_84882
def: "Visceral serous membrane which is continuous with the parietal serous pericardium and is attached to the myocardium[FMA]." [Wikipedia:Visceral_pericardium]
subset: uberon_slim
synonym: "epicardium" RELATED [MA:0000484]
synonym: "visceral lamina of serous pericardium" EXACT []
synonym: "visceral layer of serous pericardium" EXACT []
synonym: "visceral pericardium" EXACT []
xref: FMA:84882
xref: HOG:0000538
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/16/Gray968.png/200px-Gray968.png
xref: MA:0000484
is_a: UBERON:0002357 ! serous pericardium
relationship: attached_to UBERON:0002349 ! myocardium
[Term]
id: UBERON:0002426
name: chest muscle
alt_id: UBERON:MA_0000548-FMA_9619
def: "A muscle organ that is part of a chest [Obol]." [OBOL:automatic]
synonym: "anterior thoracic region muscle organ" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax muscle organ" EXACT [OBOL:automatic]
synonym: "chest muscle organ" EXACT [OBOL:automatic]
synonym: "front of thorax muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "muscle organ of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "muscle organ of chest" EXACT [OBOL:automatic]
synonym: "muscle organ of front of thorax" EXACT [OBOL:automatic]
synonym: "musculus thoracicus" EXACT []
synonym: "thoracic muscle" EXACT []
xref: FMA:9619
xref: MA:0000548
is_a: UBERON:0001774 ! muscle of trunk
is_a: UBERON:0003830 ! implied link automatically realized ! thoracic segment muscle
is_a: UBERON:0005175 ! implied link automatically realized ! chest organ
relationship: part_of UBERON:0001443
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0002427
name: arm skin
alt_id: UBERON:MA_0000596-FMA_37721
def: "A zone of skin that is part of an arm [Obol]." [OBOL:automatic]
synonym: "brachial region skin" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb skin" EXACT [OBOL:automatic]
synonym: "skin of arm" EXACT [OBOL:automatic]
synonym: "skin of brachial region" EXACT [OBOL:automatic]
synonym: "skin of proximal segment of free upper limb" EXACT [OBOL:automatic]
xref: FMA:37721
xref: MA:0000596
xref: ncithesaurus:Arm_Skin
is_a: UBERON:0000014 ! zone of skin
is_a: UBERON:0003531 ! implied link automatically realized ! forelimb skin
relationship: part_of UBERON:0001460
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0002428
name: limb bone
alt_id: UBERON:MA_0000688-MIAA_0000151
def: "A bone that is part of a limb [Obol]." [OBOL:automatic]
comment: This class was created automatically from a combination of ontologies
synonym: "bone of limb" EXACT [OBOL:automatic]
synonym: "bone organ of limb" EXACT [OBOL:automatic]
synonym: "limb bone organ" EXACT [OBOL:automatic]
synonym: "limb skeleton" RELATED []
xref: EFO:0000880
xref: EHDAA2:0002221
xref: MA:0000688
xref: MAT:0000151
xref: MIAA:0000151
is_a: UBERON:0001474 ! bone
is_a: UBERON:0004375 ! implied link automatically realized ! bone of appendage
relationship: part_of UBERON:0002101
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002091 ! appendicular skeleton
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0002429
name: cervical lymph node
alt_id: UBERON:MA_0000736-FMA_61213
def: "Cervical lymph nodes are lymph nodes found in the neck. [WP,unvetted]." [Wikipedia:Cervical_lymph_node]
subset: uberon_slim
synonym: "lymph node of neck" EXACT []
xref: FMA:61213
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4c/Lymph_node_regions.jpg/200px-Lymph_node_regions.jpg
xref: MA:0000736
xref: ncithesaurus:Cervical_Lymph_Node
is_a: UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0002430
name: lateral hypothalamic area
alt_id: UBERON:MA_0000834-FMA_62030
def: "The lateral hypothalamus or lateral hypothalamic area is a part of the hypothalamus. It is concerned with hunger. Damage to this area can cause reduced food intake. Stimulating the lateral hypothalamus causes a desire to eat, while stimulating the ventromedial hypothalamus causes a desire to stop eating. [WP,unvetted]." [Wikipedia:Lateral_hypothalamic_area]
subset: uberon_slim
synonym: "lateral division of hypothalamus" EXACT []
synonym: "lateral group of hypothalamic nuclei" EXACT []
synonym: "lateral hypothalamic group" EXACT []
synonym: "lateral hypothalamic nucleus" RELATED [MA:0000834]
synonym: "lateral hypothalamic zone (crosby)" EXACT []
xref: FMA:62030
xref: GAID:640
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: MA:0000834
xref: NIF_GrossAnatomy:birnlex_4037
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus
[Term]
id: UBERON:0002431
name: pars anterior
alt_id: UBERON:MA_0000854-ZFA_0001195
def: "the major forebrain commissure that connects the two temporal lobes of the cortex." [MP:0008230]
synonym: "anterior lobe" RELATED [MA:0000854]
synonym: "pars distalis" RELATED [MA:0000854, ZFA:0001195]
synonym: "pars glandularis" RELATED [MA:0000854]
xref: EHDAA:7532
xref: EHDAA2:0001416
xref: HOG:0000244
xref: MA:0000854
xref: ZFA:0001195
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002196 ! adenohypophysis
[Term]
id: UBERON:0002432
name: pars intermedia
alt_id: UBERON:MA_0000855-ZFA_0001197
def: "boundary between the anterior and posterior lobes of the pituitary. It contains three types of cells: basophils, chromophobes, and colloid-filled cysts. The cysts are the remainder of Rathke's pouch. In human fetal life, this area produces melanocyte stimulating hormone or MSH which causes the release of melanin pigment in skin melanocytes (pigment cells). However, the pars intermedia is normally either very small or entirely absent in adulthood. In lower vertebrates (fish, amphibians) MSH from the pars intermedia is responsible for darkening of the skin, often in response to changes in background color. This color change is due to MSH stimulating the dispersion of melanin pigment in dermal (skin) melanophore cells." [Wikipedia:Pars_intermedia]
subset: uberon_slim
xref: BTO:0001788
xref: EHDAA:8765
xref: EHDAA2:0001417
xref: HOG:0001178
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Gray1181.png/200px-Gray1181.png
xref: MA:0000855
xref: NIF_GrossAnatomy:nlx_anat_20081237
xref: ZFA:0001197
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002196 ! adenohypophysis
[Term]
id: UBERON:0002433
name: pars tuberalis
alt_id: UBERON:MA_0000856-ZFA_0001196
def: "The pars tuberalis is part of the anterior lobe of the pituitary gland, and wraps the pituitary stalk in a highly vascularized sheath. [WP,unvetted]." [Wikipedia:Pars_tuberalis]
subset: uberon_slim
xref: BTO:0001739
xref: EHDAA:8767
xref: EHDAA2:0001419
xref: HOG:0001114
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Pituitary_gland_representation.PNG/200px-Pituitary_gland_representation.PNG
xref: MA:0000856
xref: ZFA:0001196
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002196 ! adenohypophysis
[Term]
id: UBERON:0002434
name: pituitary stalk
alt_id: UBERON:MA_0000858-ZFA_0001199
def: "The pituitary stalk (also known as the infundibular stalk or simply the infundibulum) is the connection between the hypothalamus and the posterior pituitary. It carries axons from the magnocellular neurosecretory cells of the hypothalamus down to the posterior pituitary where they release their hormones into the blood. This connection is called the hypothalamohypophyseal tract, and is responsible for the release of oxytocin and antidiuretic hormone[WP]." [Wikipedia:Pituitary_stalk]
subset: uberon_slim
synonym: "hypophysial stalk" RELATED [ZFA:0001199]
synonym: "infundibulum" RELATED [ZFA:0001199]
synonym: "infundibulum of hypothalamus" RELATED [ZFA:0001199]
xref: BTO:0000768
xref: EHDAA:7538
xref: EHDAA2:0000828
xref: HOG:0000245
xref: MA:0000858
xref: ncithesaurus:Pituitary_Stalk
xref: ZFA:0001199
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001894 ! diencephalon
relationship: part_of UBERON:0002198 ! neurohypophysis
[Term]
id: UBERON:0002435
name: striatum
alt_id: UBERON:MA_0000891-FMA_77618
def: "A region of the forebrain consisting of the caudate nucleus, putamen and fundus striati.[GO]." [GOC:jl, Wikipedia:Striatum]
comment: TODO - check striatum vs corpus striatum see http://en.wikipedia.org/wiki/Striatum#History. Check caudoputamen
subset: uberon_slim
synonym: "corpus striatum" RELATED [MA:0000891]
synonym: "neostriatum" EXACT [GO:0021756, Wikipedia:Striatum]
synonym: "striate nucleus" EXACT [GO:0021756, Wikipedia:Striatum]
xref: EFO:0000109
xref: FMA:77618
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/BrainCaudatePutamen.svg/200px-BrainCaudatePutamen.svg.png
xref: MA:0000891
xref: NIF_GrossAnatomy:birnlex_1672
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0002420 ! basal ganglion
[Term]
id: UBERON:0002436
name: primary visual cortex
alt_id: UBERON:MA_0000914-FMA_236871
def: "The term visual cortex refers to the primary visual cortex (also known as striate cortex or V1) and extrastriate visual cortical areas such as V2, V3, V4, and V5. The primary visual cortex is anatomically equivalent to Brodmann area 17, or BA17. The extrastriate cortical areas consist of Brodmann area 18 and Brodmann area 19. [WP,unvetted]." [Wikipedia:Primary_visual_cortex]
subset: uberon_slim
synonym: "area striata" RELATED []
synonym: "BA17" RELATED [Wikipedia:Visual_cortex]
synonym: "Brodmann area 17" EXACT [Wikipedia:Visual_cortex]
synonym: "striate cortex" EXACT [FMA:236871]
synonym: "v1" RELATED []
xref: FMA:236871
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Brodmann_areas_17_18_19.png/200px-Brodmann_areas_17_18_19.png
xref: MA:0000914
xref: NIF_GrossAnatomy:birnlex_1748
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0002021 ! occipital lobe
[Term]
id: UBERON:0002437
name: cerebral white matter
alt_id: UBERON:MA_0000945-FMA_241998
def: "White matter is one of the two main solid components of the central nervous system. It is composed of myelinated nerve cell processes, or axons, which connect various grey matter areas (the locations of nerve cell bodies) of the brain to each other and carry nerve impulses between neurons. Cerebral and spinal white matter do not contain dendrites, which can only be found in grey matter along with neural cell bodies and shorter axons (Christine Fennema-Notestine)." [NIF_GrossAnatomy:birnlex_711]
xref: BTO:0000236
xref: FMA:241998
xref: MA:0000945
xref: ncithesaurus:Cerebral_White_Matter
xref: NIF_GrossAnatomy:birnlex_711
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0002438
name: ventral tegmental nucleus
alt_id: UBERON:MA_0001031-FMA_72435
comment: MA:0001055 anterior tegmental nucleus is a sibling to MA:0001031 ventral tegmental nucleus, but synonyms in FMA
synonym: "anterior tegmental nuclei" EXACT []
synonym: "anterior tegmental nucleus" EXACT []
synonym: "deep tegmental nucleus of gudden" EXACT []
synonym: "nucleus of gudden" RELATED [MA:0001031]
synonym: "ventral raphe tegmental nucleus" EXACT []
synonym: "ventral tegmental nuclei" EXACT []
synonym: "ventral tegmental nucleus (gudden)" EXACT []
synonym: "ventral tegmental nucleus of gudden" EXACT []
xref: FMA:72435
xref: MA:0001031
xref: NIF_GrossAnatomy:birnlex_1421
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0000988 ! pons
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002439
name: myenteric nerve plexus
alt_id: UBERON:MA_0001148-FMA_63252
def: "Part of the enteric nervous system, Auerbach's plexus (or myenteric plexus) exists between the longitudinal and circular layers of muscularis externa in the gastrointestinal tract and provides motor innervation to both layers and secretomotor innervation to the mucosa, having both parasympathetic and sympathetic input, whereas Meissner's plexus has only parasympathetic fibers. It arises from cells in the Nucleus ala cinerea, the parasympathetic nucleus of origin for the tenth cranial nerve, located in the medulla oblongata. The fibers are carried by both the anterior and posterior vagal nerves. It is found in the muscles of the esophagus, stomach, and intestine. The myenteric plexus is the major nerve supply to the gastrointestinal tract and control GI tract motility[WP]." [Wikipedia:Auerbach's_plexus]
comment: check myenteric vs submucosal
subset: uberon_slim
synonym: "Auerbach's plexus" EXACT [FMA:63252]
synonym: "Meissner's plexus" RELATED [FMA:63252]
synonym: "myenteric plexus" EXACT []
synonym: "Remak's plexus" EXACT [FMA:63252]
synonym: "submucous plexus" RELATED []
xref: BTO:0002436
xref: FMA:63252
xref: GAID:798
xref: MA:0001148
xref: NIF_GrossAnatomy:nlx_anat_100306
is_a: UBERON:0001816 ! autonomic nerve plexus
relationship: part_of UBERON:0000429 ! enteric plexus
[Term]
id: UBERON:0002440
name: inferior cervical ganglion
alt_id: UBERON:MA_0001154-FMA_6961
def: "The inferior cervical ganglion is situated between the base of the transverse process of the last cervical vertebra and the neck of the first rib, on the medial side of the costocervical artery. Its form is irregular; it is larger in size than the middle cervical ganglion, and is frequently fused with the first thoracic ganglion. [WP,unvetted]." [Wikipedia:Inferior_cervical_ganglion]
subset: uberon_slim
synonym: "stellate ganglion" RELATED [MA:0001154]
synonym: "variant cervical ganglion" EXACT []
xref: BTO:0000240
xref: EHDAA:8939
xref: EHDAA2:0000815
xref: FMA:6961
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e1/Gray844.png/200px-Gray844.png
xref: MA:0001154
is_a: UBERON:0001991 ! cervical ganglion
[Term]
id: UBERON:0002441
name: cervicothoracic ganglion
alt_id: UBERON:MA_0001157-FMA_6469
def: "The stellate ganglion (or cervicothoracic ganglion) is a sympathetic ganglion formed by the fusion of the inferior cervical ganglion and the first thoracic ganglion. Stellate ganglion is located at the level of C7, anterior to the transverse process of C7, posterior to the neck of the first rib, and just below the subclavian artery. [WP,unvetted]." [Wikipedia:Cervicothoracic_ganglion]
subset: uberon_slim
synonym: "cervicothoracic sympathetic ganglion" EXACT []
synonym: "stellate ganglion" EXACT []
xref: BTO:0001815
xref: FMA:6469
xref: GAID:711
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7a/Gray845.png/200px-Gray845.png
xref: MA:0001157
is_a: UBERON:0001991 ! cervical ganglion
relationship: part_of UBERON:0001991 ! cervical ganglion
[Term]
id: UBERON:0002442
name: axillary nerve trunk
alt_id: UBERON:MA_0001175-FMA_65265
synonym: "circumflex nerve trunk" RELATED [MA:0001175]
synonym: "right axillary neural trunk" EXACT []
xref: FMA:65265
xref: MA:0001175
is_a: UBERON:0001147 ! trunk of peripheral nerve
[Term]
id: UBERON:0002443
name: choroidal blood vessel
alt_id: UBERON:MA_0001237-FMA_76550
def: "A blood vessel that is part of a choroid [Obol]." [OBOL:automatic]
comment: cannot find singular in FMA, using Set class
synonym: "blood vessel of choroid" EXACT [OBOL:automatic]
synonym: "blood vessel of choroid coat" EXACT [OBOL:automatic]
synonym: "blood vessel of choroidea" EXACT [OBOL:automatic]
synonym: "blood vessel of posterior uvea" EXACT [OBOL:automatic]
synonym: "choroid blood vessel" EXACT [OBOL:automatic]
synonym: "choroid blood vessels" EXACT []
synonym: "choroid blood vessels set" EXACT []
synonym: "choroid coat blood vessel" EXACT [OBOL:automatic]
synonym: "choroidea blood vessel" EXACT [OBOL:automatic]
synonym: "posterior uvea blood vessel" EXACT [OBOL:automatic]
xref: FMA:76550
xref: MA:0001237
is_a: UBERON:0001981 ! blood vessel
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
relationship: part_of UBERON:0001776
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001776 ! choroid
relationship: part_of UBERON:0001776 ! choroid
[Term]
id: UBERON:0002444
name: lens fiber
alt_id: UBERON:MA_0001304-FMA_76827
def: "The lens fibers form the bulk of the lens. They are long, thin, transparent cells, with diameters typically between 4-7 micrometres and lengths of up to 12 mm long." [Wikipedia:Lens_(anatomy)#Lens_fibers]
comment: TODO - check plural vs singular. in FMA lens fiber is a cell - FMA:70950 Lens cell. Other ontologies don't appear to commit one way or another.
synonym: "lens fibers" EXACT []
synonym: "lens fibers set" EXACT []
synonym: "lens fibres" EXACT []
xref: BTO:0000724
xref: EHDAA:4745
xref: EHDAA:9065
xref: EHDAA2:0000979
xref: FMA:76827
xref: HOG:0000444
xref: MA:0001304
xref: ncithesaurus:Lens_Fiber
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000965 ! lens
[Term]
id: UBERON:0002445
name: triquetral
alt_id: UBERON:MA_0001347-FMA_23715
def: "The triquetral bone (also called triquetrum bone, pyramidal bone, three-cornered bone, and triangular bone) is located in the wrist on the medial side of the proximal row of the carpus between the lunate and pisiform bones. It is on the ulnar side of the hand, but does not articulate with the ulna. It connects with the pisiform, hamate, and lunate bones. It is the 3rd most commonly fractured carpal bone. The triangular bone may be distinguished by its pyramidal shape, and by an oval isolated facet for articulation with the pisiform bone. It is situated at the upper and ulnar side of the carpus. To facilitate its palpation in an exam, the hand must be radially deviated so that the triquetrium moves out from under the ulnar styloid process. The triquetrum may be difficult to find, since it also lies under the pisiform. The etymology derives from the Latin triquetrus which means 'three-cornered'. In reptiles and amphibians, the bone is instead referred to as the ulnare, since (at least in the most primitive fossils) it articulates with the ulna. [WP,unvetted]." [Wikipedia:Triquetral]
subset: uberon_slim
synonym: "cuneiform bone of hand" EXACT []
synonym: "cuneiform of hand" RELATED [MA:0001347]
synonym: "triangular" RELATED [MA:0001347]
synonym: "triangular bone" EXACT []
synonym: "triquetral bone" EXACT []
synonym: "triquetrum" RELATED [MA:0001347]
synonym: "ulnar carpal bone" RELATED [MA:0001347]
xref: FMA:23715
xref: galen:Triquetral
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Carpus.png/200px-Carpus.png
xref: MA:0001347
xref: ncithesaurus:Triangular_Bone
is_a: UBERON:0001480 ! proximal carpal bone
is_a: UBERON:0003460 ! implied link automatically realized ! arm bone
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0002446
name: patella
alt_id: UBERON:MA_0001374-FMA_24485
def: "The patella, also known as the knee cap or kneepan, is a thick, circular-triangular bone which articulates with the femur and covers and protects the knee joint. It is the largest sesamoid bone in the human body. It is attached to the tendon of the quadriceps femoris muscle, which contracts to extend/straighten the knee. The vastus intermedialis muscle is attached to the base of patella. The vastus lateralis and vastus medialis are attached to lateral and medial borders of patella respectively. The patella is stabilized by the insertion of vastus medialis and the prominence of the anterior femoral condyles, which prevent lateral dislocation during flexion. The retinacular fibres of the patella also stabilize it during exercise. The primary functional role of the patella is knee extension. The patella increases the leverage that the tendon can exert on the femur by increasing the angle at which it acts. The patella ossifies between the ages 2-6 years. In some people it may be absent congenitally or hypoplastic. In 2% of the population there is a bipartite patella, which is usually asymptomatic. Direct trauma, however, may produce symptoms that mimic those of a fracture. The patella has convergently evolved in placental mammals and birds; marsupials have only rudimentary, non-ossified patellae. In more primitive tetrapods, including living amphibians and reptiles, the muscle tendons from the upper leg are attached directly to the tibia, and the patella is not present. [WP,unvetted]." [Wikipedia:Patella]
comment: TODO: CHECK THIS ONE. exact syns in FMA, distinct in MA
subset: uberon_slim
synonym: "knee bone" EXACT [FMA:24485]
xref: FMA:24485
xref: GAID:203
xref: galen:Patella
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Knee_diagram.svg/200px-Knee_diagram.svg.png
xref: MA:0000666
xref: MA:0001374
xref: ncithesaurus:Patella
is_a: UBERON:0001479 ! sesamoid bone
is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone
relationship: adjacent_to UBERON:0000981
relationship: part_of UBERON:0001465
intersection_of: UBERON:0001474 ! bone
intersection_of: adjacent_to UBERON:0000981 ! femur
intersection_of: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0002447
name: palatine gland
alt_id: UBERON:MA_0001584-FMA_71616
def: "The palatine glands form a continuous layer on its posterior surface and around the uvula. They are primarily mucous secreting glands, as opposed to serous or mixed secreting glands. [WP,unvetted]." [Wikipedia:Palatine_gland]
subset: uberon_slim
synonym: "palatine glands set" EXACT []
synonym: "palatine salivary gland" EXACT []
synonym: "salivary palatine gland" EXACT []
xref: FMA:59795
xref: MA:0001584
xref: ncithesaurus:Palatine_Salivary_Gland
is_a: UBERON:0001830 ! minor salivary gland
[Term]
id: UBERON:0002448
name: fungiform papilla
alt_id: UBERON:MA_0001595-FMA_71448
def: "The fungiform papillae are mushroom shaped e (projections) on the tongue. They are located on the top (dorsal) surface of the tongue, scattered throughout the filiform papilla but mainly at the tip and lateral margins of the tongue. They have taste buds on their superior (upper) surface which can distinguish the five tastes: sweet, sour, bitter, salty, and umami. They have a core of connective tissue. They are innervated by the seventh cranial nerve, more specifically via the submandibular ganglion, chorda tympani, and geniculate ganglion ascending to the solitary nucleus (the sensory component of the Vagus nerve in the brainstem). [WP,unvetted]." [Wikipedia:Fungiform_papilla]
subset: uberon_slim
synonym: "fungiform papillae" EXACT []
synonym: "fungiform papillae set" EXACT []
xref: FMA:54821
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Gray1014.png/200px-Gray1014.png
xref: MA:0001595
xref: ncithesaurus:Fungiform_Papilla
xref: NIF_GrossAnatomy:birnlex_4106
is_a: UBERON:0001726 ! papilla of tongue
[Term]
id: UBERON:0002450
name: decidua
alt_id: UBERON:MA_0001722-MIAA_0000290
def: "Uterine lining (endometrium) during a pregnancy, which forms the maternal part of the placenta. It is formed under the influence of progesterone and forms highly-characteristic cells." [Wikipedia:Decidua]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "decidua basalis" RELATED []
synonym: "endometrium" RELATED []
xref: BTO:0001360
xref: FMA:85538
xref: GAID:378
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray33.png/200px-Gray33.png
xref: MA:0001722
xref: MAT:0000290
xref: MIAA:0000290
xref: ncithesaurus:Decidua
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001987 ! placenta
[Term]
id: UBERON:0002451
name: uterine gland
alt_id: UBERON:MA_0001726-FMA_71647
def: "tube like gland lined by ciliated columnar epithelium. lined by ciliated columnar epithelium." [Wikipedia:Uterine_glands]
comment: cannot find singular in FMA, using Set class
subset: uberon_slim
synonym: "uterine glands" EXACT []
synonym: "uterine glands set" EXACT []
xref: FMA:71647
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray1169.png/200px-Gray1169.png
xref: MA:0001726
xref: ncithesaurus:Uterine_Gland
is_a: UBERON:0002530 ! gland
is_a: UBERON:0005398 ! implied link automatically realized ! female reproductive gland
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0002453
name: ethmoid sinus
alt_id: UBERON:MA_0001792-FMA_84115
def: "The ethmoid sinus, one of the paranasal sinuses, is the collective name for the ethmoidal air cells. Each ethmoid sinus is an air-space enclosed within the ethmoid bone. The ethmoidal air cells consist of numerous thin-walled cavities situated in the ethmoidal labyrinth and completed by the frontal, maxilla, lacrimal, sphenoidal, and palatine bones. They lie between the upper parts of the nasal cavities and the orbits, and are separated from these cavities by thin bony laminæ. [WP,unvetted]." [Wikipedia:Ethmoid_sinus]
subset: uberon_slim
xref: FMA:84115
xref: GAID:356
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fb/Nnh_front.svg/200px-Nnh_front.svg.png
xref: MA:0001792
xref: ncithesaurus:Ethmoid_Sinus
is_a: UBERON:0001825 ! paranasal sinus
[Term]
id: UBERON:0002454
name: dorsal metacarpal artery
alt_id: UBERON:MA_0001944-FMA_70800
def: "Aanastomosis of dorsal carpal branch of the radial artery and the dorsal carpal branch of the ulnar artery near the back of the wrist. It is made up of the dorsal carpal branches of both the ulnar and radial arteries. It also anastomoses with the anterior interosseous artery and the posterior interosseous artery. The arch gives off three dorsal metacarpal arteries." [Wikipedia:Dorsal_metacarpal_artery]
comment: check FMA, singular. specific subtypes e.g. FMA:22761 first dorsal metacarpal artery
subset: uberon_slim
synonym: "dorsal metacarpal arteries" EXACT []
synonym: "dorsal metacarpal arteries set" EXACT []
xref: FMA:70800
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray529.png/200px-Gray529.png
xref: MA:0001944
xref: ncithesaurus:Dorsal_Metacarpal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002455
name: set of common plantar digital arteries
alt_id: UBERON:MA_0001966-FMA_70821
def: "The common plantar digital arteries are arteries of the foot. [WP,unvetted]." [Wikipedia:Common_plantar_digital_arteries]
subset: uberon_slim
synonym: "common plantar digital arteries" EXACT []
synonym: "common plantar digital arteries set" EXACT []
xref: FMA:70821
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3e/Gray555.png/200px-Gray555.png
xref: MA:0001966
is_a: UBERON:0000480 ! anatomical group
relationship: has_part UBERON:0001410 ! common palmar digital artery
[Term]
id: UBERON:0002456
name: internal thoracic artery
alt_id: UBERON:MA_0001984-FMA_3960
def: "In human anatomy, the internal thoracic artery (ITA), previously known as the internal mammary artery (a name still common among surgeons), is an artery that supplies the anterior chest wall and the breasts. It is a paired artery, with one running along each side of the sternum, to continue after its bifurcation as the superior epigastric and musculophrenic arteries. [WP,unvetted]." [Wikipedia:Internal_thoracic_artery]
subset: uberon_slim
synonym: "internal mammary artery" EXACT ATTRIBUTION_REQUIRED [MA:0001982]
synonym: "internal thoracic mammary artery" EXACT []
xref: EHDAA:8585
xref: EHDAA2:0000880
xref: FMA:3960
xref: MA:0001982
xref: MA:0001984
xref: ncithesaurus:Internal_Mammary_Artery
xref: OpenCyc:Mx4rMe0MIao8EduQrwACs5b6Bw
is_a: UBERON:0001637 ! artery
relationship: branch_of UBERON:0001533 ! subclavian artery
relationship: part_of UBERON:0001533 ! subclavian artery
[Term]
id: UBERON:0002457
name: intersegmental artery
alt_id: UBERON:MA_0001985-ZFA_0001061
xref: EHDAA:4340
xref: EHDAA2:0000882
xref: HOG:0000225
xref: MA:0001985
xref: ZFA:0001061
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002458
name: spinal artery
alt_id: UBERON:MA_0002043-ZFA_0000682
def: "." [Wikipedia:Spinal_artery]
subset: uberon_slim
synonym: "spinal arteries" RELATED [ZFA:0000682]
xref: EHDAA:4355
xref: EHDAA2:0001890
xref: MA:0002043
xref: ncithesaurus:Spinal_Artery
xref: ZFA:0000682
is_a: UBERON:0001637 ! artery
is_a: UBERON:0004258 ! implied link automatically realized ! back blood vessel
relationship: part_of UBERON:0001130
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0002459
name: inferior palpebral vein
alt_id: UBERON:MA_0002147-FMA_70847
comment: check FMA, singular.
synonym: "inferior palpebral veins" EXACT []
synonym: "inferior palpebral veins set" EXACT []
synonym: "lower palpebral vein" RELATED [MA:0002147]
xref: FMA:70847
xref: MA:0002147
xref: ncithesaurus:Inferior_Palpebral_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002460
name: vesical vein
alt_id: UBERON:MA_0002263-FMA_70911
def: "The vesical veins are tributaries of the internal iliac veins. [WP,unvetted]." [Wikipedia:Vesical_vein]
comment: check FMA, singular.
subset: uberon_slim
synonym: "vesical veins" EXACT []
synonym: "vesical veins set" EXACT []
xref: FMA:70911
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Gray585.png/200px-Gray585.png
xref: MA:0002263
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002461
name: anterior abdominal wall muscle
alt_id: UBERON:MA_0002268-FMA_20278
xref: FMA:20278
xref: MA:0002268
xref: ncithesaurus:Anterior_Abdominal_Wall_Muscle
is_a: UBERON:0002378 ! muscle of abdomen
[Term]
id: UBERON:0002462
name: erector spinae
alt_id: UBERON:MA_0002289-FMA_71302
def: "The Erector spinæ is a muscle of the back in humans and other animals. It is also known as sacrospinalis in older texts. A more modern term is extensor spinae, though this is not in widespread use. The name of the muscle is pronounced e-rec-tor speen-aye, or e-rec-tor spinae-ee. It is really not just one muscle, but a bundle of muscles and tendons. It is paired and runs more or less vertically. It extends throughout the lumbar, thoracic and cervical regions, and lies in the groove to the side of the vertebral column. Erector spinae is covered in the lumbar and thoracic regions by the lumbodorsal fascia, and in the cervical region by the nuchal ligament. This large muscular and tendinous mass varies in size and structure at different parts of the vertebral column. In the sacral region it is narrow and pointed, and at its origin chiefly tendinous in structure. In the lumbar region it is larger, and forms a thick fleshy mass which, on being followed upward, is subdivided into three columns; these gradually diminish in size as they ascend to be inserted into the vertebræ and ribs. The erector spinae arises from the anterior surface of a broad and thick tendon, which is attached to the medial crest of the sacrum, to the spinous processes of the lumbar and the eleventh and twelfth thoracic vertebræ, and the supraspinal ligament, to the back part of the inner lip of the iliac crests and to the lateral crests of the sacrum, where it blends with the sacrotuberous and posterior sacroiliac ligaments. Some of its fibers are continuous with the fibers of origin of the Glutæus maximus. The muscular fibers form a large fleshy mass which splits, in the upper lumbar region into three columns, viz. , a lateral, the Iliocostalis, an intermediate, the Longissimus, and a medial, the Spinalis. Each of these consists from below upward, of three parts, as follows: [WP,unvetted]." [Wikipedia:Erector_spinae]
subset: uberon_slim
xref: EHDAA:9456
xref: EHDAA2:0000454
xref: FMA:71302
xref: HOG:0000984
xref: MA:0002289
xref: ncithesaurus:Erector_Spinae
xref: OpenCyc:Mx4rwC7lnJwpEbGdrcN5Y29ycA
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0002463
name: hamstring muscle
alt_id: UBERON:MA_0002312-FMA_81022
def: "The biceps femoris is a muscle of the posterior (the back) thigh. As its name implies, it has two parts, one of which (the long head) forms part of the hamstrings muscle group. [WP,unvetted]." [Wikipedia:Hamstring_muscles]
comment: check FMA, singular.
subset: uberon_slim
synonym: "hamstring muscles" EXACT []
synonym: "hamstring muscles set" EXACT []
synonym: "hamstrings" EXACT []
xref: BTO:0003179
xref: EHDAA:8295
xref: EHDAA2:0000727
xref: FMA:81022
xref: HOG:0000844
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bc/Biceps_femoris_muscle_long_head.PNG/200px-Biceps_femoris_muscle_long_head.PNG
xref: MA:0002312
xref: ncithesaurus:Hamstring
xref: OpenCyc:Mx4rvVjdtJwpEbGdrcN5Y29ycA
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0002464
name: nerve trunk
alt_id: UBERON:MA_0002408-FMA_5913
synonym: "trunk of nerve" EXACT []
xref: BTO:0000927
xref: EHDAA:4675
xref: FMA:5913
xref: MA:0002408
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002465
name: lymphoid system
alt_id: UBERON:0002096
alt_id: UBERON:MA_0002435-FMA_74594
def: "The lymphatic system in vertebrates is a network of conduits that carry a clear fluid called lymph. It also includes the lymphoid tissue through which the lymph travels. Lymphoid tissue is found in many organs, particularly the lymph nodes, and in the lymphoid follicles associated with the digestive system such as the tonsils. The system also includes all the structures dedicated to the circulation and production of lymphocytes, which includes the spleen, thymus, bone marrow and the lymphoid tissue associated with the digestive system (Wikipedia)." [Wikipedia:Lymphoid_system]
comment: FMA distinguishes between lymphatic and lymphoid??
subset: uberon_slim
synonym: "lymphatic system" EXACT [MA:0002435]
synonym: "lymphatic tree system" EXACT []
xref: EFO:0000870
xref: EHDAA:8677
xref: EHDAA2:0001043
xref: FMA:7162
xref: FMA:74594
xref: GAID:931
xref: HOG:0000842
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Illu_capillary_microcirculation.jpg/200px-Illu_capillary_microcirculation.jpg
xref: MA:0002435
xref: MAT:0000197
xref: MIAA:0000197
xref: ncithesaurus:Lymphatic_System
xref: OpenCyc:Mx4rwQAKT5wpEbGdrcN5Y29ycA
xref: TAO:0000385
xref: XAO:0003199
xref: ZFA:0000385
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0002193 ! hemolymphoid system
relationship: part_of UBERON:0002405 ! immune system
[Term]
id: UBERON:0002466
name: intestine secretion
alt_id: UBERON:MA_0002515-FMA_62974
def: "Clear to pale yellow watery secretions from the glands lining the small intestine walls. Secretion is stimulated by the mechanical pressure of partly digested food in the intestine." [Wikipedia:Succus_entericus]
subset: uberon_slim
synonym: "succus entericus" EXACT []
xref: FMA:62974
xref: GAID:1162
xref: MA:0002515
xref: ncithesaurus:Intestinal_Secretion
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0002467
name: filiform papilla
alt_id: UBERON:MA_0002678-FMA_71447
def: "The filiform papillae are thin, long 'V'-shaped cones that don't contain taste buds but are the most numerous. These papillae are mechanical and not involved in gustation covering most of the dorsum (upper surface). They are small and arranged in lines parallel to the V-shaped row of circumvallate papillae, except at the tip of the tongue where they are aligned transversely. Projecting from their apices are numerous filamentous processes, or secondary papillae. These are of a whitish tint, owing to the thickness and density of the epithelium of which they are composed. This epithelium has undergone a peculiar modification as the cells have become cornified and elongated into dense, imbricated, brush-like processes. They contain also a number of elastic fibers, which render them firmer and more elastic than the papillae of mucous membrane generally. The larger and longer papillae of this group are sometimes termed papillae conicae. Fungiform papillae are found dispersed throughout the filiform papillae. [WP,unvetted]." [Wikipedia:Filiform_papilla]
subset: uberon_slim
synonym: "filiform papillae" EXACT []
synonym: "filiform papillae set" EXACT []
xref: FMA:54820
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Gray1016.png/200px-Gray1016.png
xref: MA:0002678
xref: ncithesaurus:Filiform_Papilla
xref: NIF_GrossAnatomy:birnlex_4104
is_a: UBERON:0001726 ! papilla of tongue
[Term]
id: UBERON:0002468
name: foliate papilla
alt_id: UBERON:MA_0002679-FMA_71450
def: "Taste-buds, the end-organs of the gustatory sense, are scattered over the mucous membrane of the mouth and tongue at irregular intervals. They occur especially in the sides of the vallate papillae. There is a localized area at the side of the base of the tongue, the foliate papillae, in which they are especially abundant. [WP,unvetted]." [Wikipedia:Foliate_papilla]
subset: uberon_slim
synonym: "foliate papillae" EXACT []
synonym: "foliate papillae set" EXACT []
xref: FMA:54823
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray1021.png/200px-Gray1021.png
xref: MA:0002679
xref: ncithesaurus:Foliate_Papilla
xref: NIF_GrossAnatomy:birnlex_4105
is_a: UBERON:0001726 ! papilla of tongue
[Term]
id: UBERON:0002469
name: esophagus mucosa
alt_id: UBERON:0003345
alt_id: UBERON:MA_0002680-FMA_62996
def: "A mucosa that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophageal mucosa" EXACT []
synonym: "esophagus mucosa" EXACT [FMA:62996]
synonym: "esophagus mucosa of organ" EXACT [OBOL:automatic]
synonym: "esophagus mucous membrane" EXACT [OBOL:automatic]
synonym: "esophagus organ mucosa" EXACT [OBOL:automatic]
synonym: "gullet mucosa" EXACT [OBOL:automatic]
synonym: "gullet mucosa of organ" EXACT [OBOL:automatic]
synonym: "gullet mucous membrane" EXACT [OBOL:automatic]
synonym: "gullet organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of esophagus" EXACT [OBOL:automatic]
synonym: "mucosa of gullet" EXACT [OBOL:automatic]
synonym: "mucosa of oesophagus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of esophagus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gullet" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oesophagus" EXACT [OBOL:automatic]
synonym: "mucous membrane of esophagus" EXACT []
synonym: "mucous membrane of gullet" EXACT [OBOL:automatic]
synonym: "mucous membrane of oesophagus" EXACT [FMA:62996]
synonym: "muscularis mucosae of oesophagus" EXACT [FMA:62996]
synonym: "oesophageal mucosa" EXACT [FMA:62996]
synonym: "oesophagus mucosa" EXACT []
synonym: "oesophagus mucosa of organ" EXACT [OBOL:automatic]
synonym: "oesophagus mucous membrane" EXACT [OBOL:automatic]
synonym: "oesophagus organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of esophagus" EXACT [OBOL:automatic]
synonym: "organ mucosa of gullet" EXACT [OBOL:automatic]
synonym: "organ mucosa of oesophagus" EXACT [OBOL:automatic]
xref: BTO:0002859
xref: EMAPA:26981
xref: EMAPA:26991
xref: FMA:62996
xref: MA:0002680
xref: ncithesaurus:Esophageal_Mucosa
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004786 ! implied link automatically realized ! gastrointestinal system mucosa
relationship: part_of UBERON:0001043
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001096 ! wall of esophagus
[Term]
id: UBERON:0002470
name: autopod
alt_id: UBERON:MA_0002714-MIAA_0000091
def: "Terminal segment of free upper limb. The generic name for hand, paw, foot etc" [UBERON:cjm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "autopodium" EXACT []
synonym: "distal free limb segment" EXACT []
synonym: "paw" RELATED []
synonym: "pod" RELATED []
xref: EFO:0000877
xref: FMA:83015
xref: MA:0002714
xref: MAT:0000091
xref: MIAA:0000091
is_a: UBERON:0002529 ! limb segment
[Term]
id: UBERON:0002471
name: zeugopod
alt_id: UBERON:MA_0002716-MIAA_0000092
def: "The middle part of the limb (e.g. between the elbow and wrist)" []
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "middle limb segment" EXACT []
synonym: "middle part of limb" BROAD []
synonym: "zeugopodium" EXACT []
xref: EFO:0000878
xref: MA:0002716
xref: MAT:0000092
xref: MIAA:0000092
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0002472
name: stylopod
alt_id: UBERON:MA_0002717-MIAA_0000093
def: "Limb segment that is the proximal part of the limb (e.g. between shoulder and elbow)." []
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "proximal part of limb" BROAD []
synonym: "stylopodium" EXACT []
xref: EFO:0000879
xref: MA:0002717
xref: MAT:0000093
xref: MIAA:0000093
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0002473
name: intercerebral commissure
alt_id: UBERON:MA_0002721-FMA_67930
def: "Class of unpaired telencephalic white matter structures consisting of fiber pathways which project across the midsagittal plane and which serve to interconnect telencephalic structures lying within the contralateral cerebral hemisphere[FMA]." [FMA:67930]
synonym: "brain commissure" NARROW []
synonym: "interhemispheric commissure" RELATED [MA:0002721]
xref: FMA:67930
xref: MA:0002721
is_a: UBERON:0001020 ! commissure
is_a: UBERON:0005970 ! implied link automatically realized ! brain commissure
relationship: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002474
name: cerebellar peduncle
alt_id: UBERON:MA_0002742-FMA_77791
def: "The cerebellum (Latin for little brain) is a region of the brain that plays an important role in the integration of sensory perception, coordination and motor control. In order to coordinate motor control, there are many neural pathways linking the cerebellum with the cerebral motor cortex (which sends information to the muscles causing them to move) and the spinocerebellar tract (which provides proprioceptive feedback on the position of the body in space). The cerebellum integrates these pathways using the constant feedback to fine-tune motor activity. Because of this 'updating' function of the cerebellum, lesions within it are not so debilitating as to cause paralysis, but rather present as feedback deficits resulting in disorders in fine movement, equilibrium, posture, and motor learning. Initial observations by physiologists during the 18th century indicated that patients with cerebellar damage show problems with motor coordination and movement. Research into cerebellar function during the early to mid 19th century was done via lesion and ablation studies in animals. Research physiologists noted that such lesions led to animals with strange movements, awkward gait, and muscular weakness. These observations and studies led to the conclusion that the cerebellum was a motor control structure. However, modern research shows that the cerebellum has a broader role in a number of key cognitive functions, including attention and the processing of language, music, and other sensory temporal stimuli. [WP,unvetted]." [Wikipedia:Cerebellar_peduncle]
comment: todo checkk FMA see also FMA:77791 Set of cerebellar peduncles
subset: uberon_slim
synonym: "cerebellar peduncles" EXACT []
synonym: "cerebellar peduncles set" EXACT []
xref: FMA:83860
xref: MA:0002742
xref: NIF_GrossAnatomy:birnlex_970
is_a: UBERON:0002317 ! white matter of cerebellum
[Term]
id: UBERON:0002475
name: saphenous nerve
alt_id: UBERON:MA_0002761-FMA_45262
def: "The saphenous nerve (long or internal saphenous nerve) is the largest cutaneous branch of the femoral nerve. [WP,unvetted]." [Wikipedia:Saphenous_nerve]
subset: uberon_slim
xref: FMA:45262
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/de/Gray827.png/200px-Gray827.png
xref: MA:0002761
xref: OpenCyc:Mx4rvY0kgpwpEbGdrcN5Y29ycA
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve
relationship: branch_of UBERON:0001267 ! femoral nerve
[Term]
id: UBERON:0002476
name: lateral globus pallidus
alt_id: UBERON:MA_0002767-FMA_61839
def: "The lateral globus pallidus (or external, GPe) receives a strong glutamatergic projection from the subthalamic nucleus. The two form a particular system: a coupled pacemaker. The axons of the external globus pallidum go essentially to the subthalamic nucleus. They go also to other elements of the basal ganglia system, the striatum, the substantia nigra pars reticulata, and the internal globus pallidus, where they release the neurotransmitter GABA. GPe is particular in comparison to the other elements of the set by the fact that it does not work as an output base of the basal ganglia (not sending axons to the thalamus) but as the main regulator of the basal ganglia system. It is sometimes used as a target for deep brain stimulation as a treatment for Parkinson's disease. [WP,unvetted]." [Wikipedia:Lateral_globus_pallidus]
subset: uberon_slim
synonym: "external globus pallidus" EXACT []
synonym: "globus pallidus external segment" RELATED [MA:0002767]
synonym: "globus pallidus externus" EXACT []
synonym: "globus pallidus lateral segment" RELATED [MA:0002767]
synonym: "globus pallidus, lateral segment" EXACT []
synonym: "lateral pallidal segment" EXACT []
synonym: "lateral part of globus pallidus" EXACT []
synonym: "pallidus II" EXACT [FMA:61839]
xref: FMA:61839
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Brain_structure.gif/200px-Brain_structure.gif
xref: MA:0002767
xref: NIF_GrossAnatomy:birnlex_1610
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001875 ! globus pallidus
[Term]
id: UBERON:0002477
name: medial globus pallidus
alt_id: UBERON:MA_0002768-FMA_61840
def: "The medial globus pallidus (or internal, GPi) is one of the output nuclei of the basal ganglia. The GABA-containing neurons send their axons to specific nuclei of the dorsal thalamus (VA and VL), to the centromedian complex and to the pedunculopontine complex. The efferent bundle is constituted first of the ansa and fasciculus lenticularis, then crosses the internal capsule as the Edinger's comb system then arrives at the laterosuperior corner of the subthalamic nucleus and constitutes the Forel's field H2, then H, and suddenly changes its direction to form H1 that goes to the inferior part of the thalamus. The distribution of axonal islands is widespread in the lateral region of the thalamus. The innervation of the central region is done by collaterals. [WP,unvetted]." [Wikipedia:Medial_globus_pallidus]
subset: uberon_slim
synonym: "entopeduncular nucleus" RELATED [MA:0002768]
synonym: "entopeduncular nucleus (monakow)" EXACT []
synonym: "globus pallidus inernal segment" RELATED [MA:0002768]
synonym: "globus pallidus internal segment" EXACT []
synonym: "globus pallidus internus" EXACT []
synonym: "globus pallidus medial segment" RELATED [MA:0002768]
synonym: "globus pallidus, medial segment" EXACT []
synonym: "internal globus pallidus" EXACT []
synonym: "medial pallidal segment" EXACT []
synonym: "medial part of globus pallidus" EXACT []
synonym: "mesial pallidum" EXACT []
synonym: "pallidus i" EXACT []
xref: FMA:61840
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Brain_structure.gif/200px-Brain_structure.gif
xref: MA:0002768
xref: NIF_GrossAnatomy:birnlex_1555
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001875 ! globus pallidus
[Term]
id: UBERON:0002478
name: orbitosphenoid
alt_id: UBERON:MA_0002773-ZFA_0000253
synonym: "lesser wing of sphenoid bone" RELATED [MA:0002773]
xref: AAO:0000345
xref: FMA:52869
xref: HOG:0001153
xref: MA:0002773
xref: ZFA:0000253
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone
relationship: part_of UBERON:0001677 ! sphenoid bone
[Term]
id: UBERON:0002479
name: dorsal lateral geniculate nucleus
alt_id: UBERON:MA_0002775-FMA_62214
synonym: "dorsal nucleus of lateral geniculate body" RELATED [MA:0002775]
synonym: "lateral geniculate complex, dorsal part" EXACT []
xref: FMA:62214
xref: MA:0002775
xref: NIF_GrossAnatomy:birnlex_1595
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001926 ! lateral geniculate body
[Term]
id: UBERON:0002480
name: ventral lateral geniculate nucleus
alt_id: UBERON:MA_0002776-FMA_62215
synonym: "lateral geniculate complex, ventral part" EXACT []
synonym: "pregeniculate nucleus" EXACT []
synonym: "ventral nucleus of lateral geniculate body" RELATED [MA:0002776]
xref: FMA:62215
xref: MA:0002776
xref: NIF_GrossAnatomy:birnlex_1597
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001926 ! lateral geniculate body
[Term]
id: UBERON:0002481
name: bone tissue
alt_id: UBERON:MA_0002780-FMA_224804
def: "The major structural and supportive connective tissue of the body. Osseous tissue forms the rigid part of the bone organs that make up the skeletal system." [Wikipedia:Bone_tissue]
subset: uberon_slim
synonym: "calcium tissue" EXACT []
synonym: "osseous tissue" EXACT []
xref: FMA:224804
xref: galen:BoneTissue
xref: MA:0002780
xref: ncithesaurus:Bone_Tissue
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004755 ! skeletal tissue
relationship: part_of UBERON:0001474 ! bone
[Term]
id: UBERON:0002482
name: lamellar bone
alt_id: UBERON:MA_0002781-FMA_224806
def: "Bone tissue that has a regular parallel alignment of collagen into sheets (lamellae) and is mechanically strong." [Wikipedia:Bone#Woven_or_lamellar]
comment: histological classification, lamellar vs woven. Note that only FMA has woven
xref: FMA:224806
xref: galen:LamellarBone
xref: MA:0002781
is_a: UBERON:0002481 ! bone tissue
[Term]
id: UBERON:0002483
name: trabecular bone tissue
alt_id: UBERON:MA_0002782-FMA_24019
def: "Cancellous bone, synonymous with trabecular bone or spongy bone, is one of the two types of osseous tissue that form bones. Compared to compact bone, which is the other type of osseous tissue, it has a higher surface area but is less dense, softer, weaker, and less stiff. It typically occupies the interior region of bones. Cancellous bone is highly vascular and frequently contains red bone marrow where hematopoiesis, which is the production of blood cells, occurs. The primary anatomical and functional unit of cancellous bone is the trabecula. Its Latin name is substantia spongiosa or substantia spongiosa ossium. The words cancellous and trabecular refer to the tiny, lattice-shaped that form the tissue. [WP,unvetted]." [Wikipedia:Trabecular_bone]
comment: one of the two types of osseous tissue that form bones. Compared to compact bone, which is the other type of osseous tissue, it has a higher surface area but is less dense, softer, weaker, and less stiff. It typically occurs at the ends of long bones, proximal to joints and within the interior of vertebrae. Cancellous bone is highly vascular and frequently contains red bone marrow where hematopoiesis, which is the production of blood cells, occurs. The primary anatomical and functional unit of cancellous bone is the trabecula.
subset: uberon_slim
synonym: "cancellous bone" EXACT [FMA:24019, MA:0002782]
synonym: "cancellous bone tissue" EXACT []
synonym: "spongy bone" EXACT []
synonym: "spongy bone tissue" EXACT []
synonym: "substantia spongiosa" EXACT [Wikipedia:Trabecular_bone]
synonym: "substantia spongiosa ossium" EXACT [Wikipedia:Trabecular_bone]
synonym: "trabecular bone" EXACT []
xref: BTO:0001700
xref: FMA:24019
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/34/Illu_compact_spongy_bone.jpg/200px-Illu_compact_spongy_bone.jpg
xref: MA:0002782
is_a: UBERON:0002481 ! bone tissue
disjoint_from: UBERON:0001439 ! compact bone
relationship: part_of UBERON:0002482 ! lamellar bone
[Term]
id: UBERON:0002484
name: bone marrow cavity
alt_id: UBERON:MA_0002783-FMA_75147
def: "the medullary cavities of the bones." [MP:0000065]
synonym: "cavity of cancellous bone" EXACT []
xref: FMA:75147
xref: MA:0002783
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001439 ! compact bone
[Term]
id: UBERON:0002485
name: prostate duct
alt_id: UBERON:MA_0002785-FMA_19580
def: "the minute canals that pass the prostatic secretions to the urethra." [MP:0009734]
synonym: "duct of prostate" EXACT []
synonym: "duct of prostate gland" EXACT []
synonym: "prostate duct" EXACT []
synonym: "prostate gland duct" EXACT []
synonym: "prostatic duct" EXACT []
xref: FMA:19580
xref: MA:0002785
xref: ncithesaurus:Prostatic_Duct
is_a: UBERON:0000058 ! duct
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005904 ! implied link automatically realized ! duct of male reproductive system
relationship: part_of UBERON:0002367
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0002367 ! prostate gland
relationship: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0002486
name: glottis
alt_id: UBERON:MA_0002788-FMA_55414
def: "The glottis is defined as the combination of the vocal folds and the space in between the folds. [WP,unvetted]." [Wikipedia:Glottis]
subset: uberon_slim
xref: BTO:0001627
xref: FMA:55414
xref: GAID:343
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Arytenoid_cartilage.png/200px-Arytenoid_cartilage.png
xref: MA:0002788
xref: ncithesaurus:Glottis
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0002487
name: tooth cavity
alt_id: UBERON:MA_0002792-FMA_55660
def: "." [Wikipedia:Tooth_cavity]
subset: uberon_slim
synonym: "cavitas dentis" EXACT []
synonym: "cavity of tooth" RELATED [MA:0002792]
synonym: "pulp cavity" EXACT []
synonym: "pulp cavity of tooth" EXACT []
synonym: "tooth pulp cavity" RELATED [MA:0002792]
xref: FMA:55660
xref: MA:0002792
is_a: UBERON:0002558 ! organ cavity
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0002488
name: helix
alt_id: UBERON:MA_0002793-FMA_60992
def: "." [Wikipedia:Helix]
subset: uberon_slim
synonym: "helical part of pinna" EXACT []
synonym: "helix (auricula)" EXACT []
synonym: "helix of auricle of ear" EXACT []
synonym: "helix of ear" EXACT []
synonym: "helix of pinna" EXACT []
xref: FMA:60992
xref: MA:0002793
xref: ncithesaurus:Helix
xref: OpenCyc:Mx4rwRDEk5wpEbGdrcN5Y29ycA
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0002489
name: coronal suture
alt_id: UBERON:MA_0002795-FMA_52928
def: "The coronal suture is a dense, fibrous connective tissue joint that separates the frontal and parietal bones of the skull. At birth, the bones of the skull do not meet. [WP,unvetted]." [Wikipedia:Coronal_suture]
subset: uberon_slim
synonym: "coronal suture of skull" EXACT []
xref: FMA:52928
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Gray188-Coronal_suture.png/200px-Gray188-Coronal_suture.png
xref: MA:0002795
xref: OpenCyc:Mx4rv2eGHZwpEbGdrcN5Y29ycA
is_a: UBERON:0003685 ! cranial suture
relationship: systemic_part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0002490
name: frontal suture
alt_id: UBERON:MA_0002796-FMA_52989
def: "The frontal suture is a dense connective tissue structure that divides the two halves of the frontal bone of the skull in infants and children. It usually disappears by the age of six, with the two halves of the frontal bone being fused together. If it does not disappear it may be called a 'metopic suture' or 'sutura frontalis persistens. ' If the suture is not present at birth (craniosynostosis) it will cause a keel-shaped deformity of the skull called 'trigonocephaly. ' It is present in a fetal skull so that the skull can bend and is very elastic at the time of birth. The baby's head literally bends when coming out of the mother's womb. The space is filled as the child grows older. [WP,unvetted]." [Wikipedia:Frontal_suture]
subset: uberon_slim
synonym: "frontal suture of skull" EXACT []
synonym: "metopic suture" RELATED [MA:0002796]
synonym: "sutura frontalis" EXACT []
xref: FMA:52989
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/17/Gray134.png/200px-Gray134.png
xref: MA:0002796
is_a: UBERON:0003685 ! cranial suture
[Term]
id: UBERON:0002491
name: lambdoid suture
alt_id: UBERON:MA_0002797-FMA_52933
def: "The lambdoid suture (or lambdoidal suture) is a dense, fibrous connective tissue joint on the posterior aspect of the skull that connects the parietal and temporal bones with the occipital bone. Its name comes from its lambda-like shape. [WP,unvetted]." [Wikipedia:Lambdoid_suture]
subset: uberon_slim
synonym: "lambdoid suture of skull" EXACT []
synonym: "lambdoidal suture" RELATED [MA:0002797]
xref: FMA:52933
xref: MA:0002797
is_a: UBERON:0003685 ! cranial suture
relationship: systemic_part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0002492
name: sagittal suture
alt_id: UBERON:MA_0002798-FMA_52929
def: "The sagittal suture is a dense, fibrous connective tissue joint between the two parietal bones of the skull. At birth, the bones of the skull do not meet. If certain bones of the skull grow too fast then 'premature closure' of the sutures may occur. This can result in skull deformities. If the sagittal suture closes early the skull becomes long, narrow, and wedge-shaped, a condition called 'scaphocephaly. ' Two anatomical landmarks are found on the sagittal suture: the bregma and the vertex of the skull. The bregma is formed by the intersection of the sagittal and coronal sutures, and the vertex is the highest point on the skull and is many times near the midpoint of the sagittal suture. The sagittal suture is also known as the 'interparietal suture' and the 'sutura interparietalis. ' The term is derived from the Latin word Sagitta, meaning 'arrow'. The derivation of this term may be demonstrated by observing how the sagittal suture is notched posteriorly, like an arrow, by the lambdoid suture. [WP,unvetted]." [Wikipedia:Sagittal_suture]
subset: uberon_slim
synonym: "sagittal suture of skull" EXACT []
xref: FMA:52929
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/24/Kort-lang-skalle.gif/200px-Kort-lang-skalle.gif
xref: MA:0002798
is_a: UBERON:0003685 ! cranial suture
relationship: systemic_part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0002493
name: uterine artery
alt_id: UBERON:MA_0002799-FMA_18829
def: "The uterine artery is an artery in females that supplies blood to the uterus. [WP,unvetted]." [Wikipedia:Uterine_artery]
subset: uberon_slim
xref: FMA:18829
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ae/Gray1170.png/200px-Gray1170.png
xref: MA:0002799
is_a: UBERON:0001637 ! artery
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000995
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0002494
name: papillary muscle
alt_id: UBERON:MA_0002800-FMA_12154
def: "In anatomy, the papillary muscles of the heart serve to limit the movements of the mitral and tricuspid valves. These muscles contract to tighten the chordae tendineae, which in turn prevent inversion. This occurs in response to pressure gradients. Instead they brace the valves against the high pressure, preventing regurgitation of ventricular blood back into the atrial cavities. [WP,unvetted]." [Wikipedia:Papillary_muscle]
subset: uberon_slim
synonym: "papillary muscle of ventricle" RELATED [MA:0002800]
synonym: "ventricular papillary muscle" RELATED [MA:0002800]
xref: EHDAA:8655
xref: EHDAA2:0001398
xref: FMA:12154
xref: GAID:175
xref: galen:PapillaryMuscle
xref: HOG:0001392
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Papillary_muscles.png/200px-Papillary_muscles.png
xref: MA:0002800
xref: ncithesaurus:Papillary_Muscle
xref: OpenCyc:Mx4rDid0jLYYEduAAAACs2IKfQ
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0002495
name: long bone
alt_id: UBERON:MA_0002802-FMA_7474
def: "." [Wikipedia:Long_bone]
subset: uberon_slim
xref: FMA:7474
xref: galen:LongBone
xref: MA:0002802
xref: ncithesaurus:Long_Bone
xref: OpenCyc:Mx4rv6axr5wpEbGdrcN5Y29ycA
is_a: UBERON:0001474 ! bone
relationship: part_of UBERON:0002091 ! appendicular skeleton
relationship: systemic_part_of UBERON:0001434 ! skeletal system
[Term]
id: UBERON:0002496
name: stapes base
alt_id: UBERON:MA_0002804-FMA_52769
def: "." [Wikipedia:Footplate]
subset: uberon_slim
synonym: "base of stapes" RELATED [MA:0002804]
synonym: "footplate" EXACT []
synonym: "stapes footplate" RELATED [MA:0002804]
xref: EHDAA:5143
xref: EHDAA:6096
xref: FMA:52769
xref: MA:0002804
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001687 ! stapes
[Term]
id: UBERON:0002497
name: acromion
alt_id: UBERON:MA_0002805-FMA_23260
def: "The acromion process, or simply the acromion, is an anatomical feature on the shoulder blade, together with the coracoid process extending laterally over the shoulder joint. [WP,unvetted]." [Wikipedia:Acromion]
subset: uberon_slim
xref: AAO:0000826
xref: FMA:23260
xref: GAID:187
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/79/Gray206.png/200px-Gray206.png
xref: MA:0002805
xref: ncithesaurus:Acromion
xref: OpenCyc:Mx4rvmrF8pwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001124 ! scapula
[Term]
id: UBERON:0002498
name: deltoid tuberosity
alt_id: UBERON:MA_0002808-FMA_23418
def: "The deltoid tuberosity is the region on the shaft of the humerus to which the deltoid muscle attaches. [WP,unvetted]." [Wikipedia:Deltoid_tuberosity]
subset: uberon_slim
synonym: "tuberositas deltoidea (corpus humeri)" EXACT []
xref: FMA:23418
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/HumerusFront.png/200px-HumerusFront.png
xref: MA:0002808
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone
relationship: part_of UBERON:0004652 ! humerus diaphysis
[Term]
id: UBERON:0002499
name: cochlear labyrinth
alt_id: UBERON:MA_0002809-FMA_61259
def: "For more uses of the word labyrinth, see Labyrinth (disambiguation) The labyrinth is a system of fluid passages in the inner ear, including both the cochlea, which is part of the auditory system, and the vestibular system, which provides the sense of balance. It is named by analogy with the mythical maze that imprisoned the Minotaur, because of its appearance. The bony labyrinth, or osseous labyrinth, is the network of passages with bony walls lined with periosteum. The bony labyrinth is lined with the membranous labyrinth. There is a layer of perilymph between them. The three parts of the bony labyrinth are the vestibule of the ear, the semicircular canals, and the cochlea. The vestibular system is the region of the inner ear where the semicircular canals converge, close to the cochlea (the hearing organ). The vestibular system works with the visual system to keep objects in focus when the head is moving. Joint and muscle receptors also are important in maintaining balance. The brain receives, interprets, and processes the information from these systems that control our balance. [WP,unvetted]." [Wikipedia:Cochlear_labyrinth]
comment: WP - The labyrinth can be divided by layer or by region. Bony vs. membranous / Vestibular vs. cochlear
subset: uberon_slim
xref: FMA:61259
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png
xref: MA:0002809
xref: ncithesaurus:Cochlear_Labyrinth
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001844 ! cochlea
relationship: part_of UBERON:0001849 ! membranous labyrinth
[Term]
id: UBERON:0002500
name: zygomatic arch
alt_id: UBERON:MA_0002810-FMA_53120
def: "The zygomatic arch or cheek bone is formed by the zygomatic process of temporal bone (a bone extending forward from the side of the skull, over the opening of the ear) and the temporal process of the zygomatic bone (the side of the cheekbone), the two being united by an oblique suture; the tendon of the Temporalis passes medial to the arch to gain insertion into the coronoid process of the mandible. The term zygomatic derives from the Latin zyosislymore meaning malar bone or cheekbone. The zygomatic arch is occasionally referred to as the zygoma, but this term usually refers to the zygomatic bone or occasionally the zygomatic process. The zygomatic process of the temporal arises by two roots: an anterior, directed inward in front of the mandibular fossa, where it expands to form the articular tubercle. a posterior, which runs backward above the external acoustic meatus and is continuous with the supramastoid crest. The upper border of the arch gives attachment to the temporal fascia; the lower border and medial surface give origin to the Masseter. The zygomatic arch is significant in evolutionary biology, as it is part of the structures derived from the ancestral single temporal fenestra of the synapsid ancestor of mammals. [WP,unvetted]." [Wikipedia:Zygomatic_arch]
subset: uberon_slim
synonym: "zygoma" EXACT []
xref: FMA:53120
xref: GAID:225
xref: galen:Zygoma
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Gray188-Sphenozygomatic_suture.png/200px-Gray188-Sphenozygomatic_suture.png
xref: MA:0002810
xref: ncithesaurus:Zygomatic_Arch
xref: OpenCyc:Mx4rvih1YZwpEbGdrcN5Y29ycA
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0002501
name: oval window
alt_id: UBERON:MA_0002813-FMA_56913
def: "The oval window (or vestibular window) is a membrane-covered opening which leads from the middle ear to the vestibule of the inner ear. Vibrations that come into contact with the tympanic membrane travel through the three ossicles and into the inner ear. The oval window is the intersection of the middle ear with the inner ear, and is directly contacted by the stapes; by the time vibrations reach the oval window, they have been amplified over twenty times from what they were when they contacted the tympanic membrane, a testament to the amplifying power of the middle ear. It is a reniform (kidney-shaped) opening leading from the tympanic cavity into the vestibule of the internal ear; its long diameter is horizontal, and its convex border is upward. In the recent state it is occupied by the base of the stapes, the circumference of which is fixed by the annular ligament to the margin of the foramen. [WP,unvetted]." [Wikipedia:Oval_window]
subset: uberon_slim
synonym: "oval window of petrous part of temporal bone" EXACT []
synonym: "vestibular window" RELATED [MA:0002813]
xref: FMA:56913
xref: GAID:882
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9d/Gray911.png/200px-Gray911.png
xref: MA:0002813
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001694 ! petrous part of temporal bone
[Term]
id: UBERON:0002502
name: round window
alt_id: UBERON:MA_0002814-FMA_56932
def: "The round window is one of the two openings into the cochlea of the inner ear. It is closed off from the middle ear by the round window membrane, which vibrates with opposite phase to vibrations entering the cochlea through the oval window. It allows fluid in the cochlea to move, which in turn ensures that hair cells of the basilar membrane will be stimulated and that audition will occur. [WP,unvetted]." [Wikipedia:Round_window]
subset: uberon_slim
synonym: "cochlear window" RELATED [MA:0002814]
synonym: "round window of petrous part of temporal bone" EXACT []
xref: FMA:56932
xref: GAID:878
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9d/Gray911.png/200px-Gray911.png
xref: MA:0002814
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001694 ! petrous part of temporal bone
[Term]
id: UBERON:0002503
name: greater trochanter
alt_id: UBERON:MA_0002822-FMA_32852
def: "The greater trochanter (great trochanter) of the femur is a large, irregular, quadrilateral eminence and a part of the skeletal system. It is directed a little lateralward and backward, and, in the adult, is about 1 cm lower than the head. Because the pelvic outlet in the female is larger than in the male, there is a greater distance between the greater trochanters in the female. It has two surfaces and four borders. [WP,unvetted]." [Wikipedia:Greater_trochanter]
subset: uberon_slim
synonym: "greater trochanter of femur" EXACT []
xref: FMA:32852
xref: galen:GreaterTrochanter
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/97/Gray243.png/200px-Gray243.png
xref: MA:0002822
is_a: UBERON:0000980 ! trochanter
[Term]
id: UBERON:0002504
name: lesser trochanter
alt_id: UBERON:MA_0002823-FMA_32853
def: "The lesser trochanter (small trochanter) of the femur is a conical eminence, which varies in size in different subjects [WP,unvetted]." [Wikipedia:Lesser_trochanter]
subset: uberon_slim
synonym: "lesser trochanter of femur" EXACT []
xref: FMA:32853
xref: galen:LesserTrochanter
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray341.png/200px-Gray341.png
xref: MA:0002823
xref: ncithesaurus:Lesser_Trochanter
is_a: UBERON:0000980 ! trochanter
[Term]
id: UBERON:0002505
name: spiral modiolar artery
alt_id: UBERON:MA_0002824-FMA_52312
def: "the artery which parallels the spiral ganglion in the root of the spiral lamina of the modiolus, serving the ganglion and the cochlear duct and its contents." [MP:0004629]
xref: FMA:52312
xref: MA:0002824
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002506
name: iris epithelium
alt_id: UBERON:MA_0002826-FMA_58517
def: "An epithelium that is part of a iris [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of iris" EXACT [OBOL:automatic]
synonym: "epithelium of iris" EXACT [OBOL:automatic]
synonym: "epithelium pigmentosum (iris)" EXACT []
synonym: "iris epithelial tissue" EXACT [OBOL:automatic]
synonym: "iris pigmented epithelium" RELATED [MA:0002826]
synonym: "pigmented epithelium of iris" EXACT []
xref: FMA:58517
xref: MA:0002826
is_a: UBERON:0000488 ! atypical epithelium
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001769
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001769 ! iris
relationship: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0002507
name: abdominal lymph node
alt_id: UBERON:MA_0002827-FMA_12787
def: "A lymph node that is part of an abdomen [Obol]." [OBOL:automatic]
synonym: "abdomen lymph node" EXACT [OBOL:automatic]
synonym: "lymph node of abdomen" EXACT []
xref: FMA:12787
xref: MA:0002827
is_a: UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000916
intersection_of: UBERON:0000029 ! lymph node
intersection_of: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0002508
name: celiac lymph node
alt_id: UBERON:MA_0002828-FMA_12792
def: "The visceral glands are associated with the branches of the celiac, superior and inferior mesenteric arteries. Those related to the branches of the celiac artery (the celiac lymph nodes) form three sets, gastric, hepatic, and pancreaticolienal. gastric lymph nodes hepatic lymph nodes splenic lymph nodes [WP,unvetted]." [Wikipedia:Celiac_lymph_node]
subset: uberon_slim
synonym: "celiac node" EXACT []
synonym: "coeliac node" EXACT []
synonym: "nodus lymphaticus coeliacus" EXACT []
synonym: "terminal ventral aortic node" EXACT []
xref: FMA:12792
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/71/Gray613.png/200px-Gray613.png
xref: MA:0002828
xref: ncithesaurus:Celiac_Lymph_Node
is_a: UBERON:0002507 ! abdominal lymph node
[Term]
id: UBERON:0002509
name: mesenteric lymph node
alt_id: UBERON:MA_0002829-FMA_12795
def: "the lymph nodes located in the mesentery, of which there are 3 classes: ileocolic, juxtaintestinal mesenteric, and central superior group." [MP:0005232]
synonym: "mesenteric node" EXACT []
xref: BTO:0000767
xref: FMA:12795
xref: MA:0002829
is_a: UBERON:0002507 ! abdominal lymph node
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002095
intersection_of: UBERON:0002507 ! abdominal lymph node
intersection_of: part_of UBERON:0002095 ! mesentery
[Term]
id: UBERON:0002510
name: anterior fontanel
alt_id: UBERON:MA_0002830-FMA_75439
def: "The anterior fontanelle (bregmatic fontanelle, frontal fontanelle) is the largest, and is placed at the junction of the sagittal suture, coronal suture, and frontal suture; it is lozenge-shaped, and measures about 4 cm in its antero-posterior and 2.5 cm in its transverse diameter. The fontanelle allows the skull to deform during birth to ease its passage through the birth canal and for expansion of the brain after birth. While the posterior and lateral fontanelles are obliterated by about six months after birth, the anterior is not completely closed until about the middle of the second year. Full ossification starts in the late twenties and finishes before the age of 50 . [WP,unvetted]." [Wikipedia:Anterior_fontanelle]
xref: FMA:75439
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray197.png/200px-Gray197.png
xref: MA:0002830
is_a: UBERON:0002221 ! fontanelle
[Term]
id: UBERON:0002511
name: trabecula carnea
alt_id: UBERON:MA_0002831-FMA_7269
def: "The trabeculae carneae (columnae carneae, or fleshy beams), are rounded or irregular muscular columns which project from the inner surface of the right and left ventricles of the heart.[1] They should not be confused with the pectinate muscles, which are present in the right[1] and left atria only. They are of three kinds: * some are attached along their entire length on one side and merely form prominent ridges,* others are fixed at their extremities but free in the middle, * while a third set, the papillary muscles are continuous by their bases with the wall of the ventricle, while their apices give origin to the chordæ tendineæ which pass to be attached to the segments of both the mitral valve and the tricuspid valve. The purpose of the trabeculae carneae is most likely to prevent suction that would occur with a flat surfaced membrane and thus impair the heart's ability to pump efficiently. The trabeculae carneae also serve a similar function to papillary muscles in that their contraction pulls on the chordae tendineae, preventing inversion of the mitral (bicuspid) and tricuspid valves, that is, their bulging towards the atrial chambers, which would lead to subsequent leakage of the blood into the atria. So by the action of papillary muscles on the atrioventricular valves, backflow of the blood from the ventricles into the atria is prevented[WP]." [Wikipedia:Trabeculae_carneae]
comment: TODO - check - add link to ventricle?
synonym: "cardiac trabecula" RELATED [GO:0060347]
synonym: "heart trabecula" RELATED [GO:0060347]
synonym: "trabecula of heart" RELATED []
synonym: "ventricle trabecula carnea" EXACT [MA:0002831]
synonym: "ventricular trabecula" RELATED [MA:0002831]
xref: EMAPA:18626
xref: FMA:7269
xref: MA:0002831
is_a: UBERON:0000440 ! trabecula
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002512
name: corpus luteum
alt_id: UBERON:MA_0002834-FMA_18619
def: "The corpus luteum (Latin for 'yellow body') (plural corpora lutea) is a temporary endocrine structure in mammals, involved in production of progestogen, which is needed to maintain the endometrium. [WP,unvetted]." [Wikipedia:Corpus_luteum]
subset: uberon_slim
synonym: "corpus luteum of ovary" EXACT []
xref: BTO:0000292
xref: FMA:18619
xref: GAID:369
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/57/Folliclesinovary.jpg/200px-Folliclesinovary.jpg
xref: MA:0002834
xref: ncithesaurus:Corpus_Luteum
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: develops_from UBERON:0001305 ! ovarian follicle
relationship: part_of UBERON:0000949 ! endocrine system
relationship: part_of UBERON:0000992 ! ovary
[Term]
id: UBERON:0002513
name: endochondral bone
alt_id: UBERON:MA_0002836-ZFA_0001591
def: "Replacement bone that forms within cartilage[TAO]. Endochondral ossification is the formation of bone by the replacement of cartilage tissue with mineralized bone[GO]. cartilage is present during endochondral ossification. It is also an essential process during the rudimentary formation of long bones, the growth of the length of long bones, and the natural healing of bone fractures[WP]." [GO:0001958, Wikipedia:Endochondral_bone]
comment: we make the strong assertion that this is disjoint from IM bone. Some bones may be a mixture, in this case we would create a new mixed IM/EC bone class.
subset: uberon_slim
xref: AEO:0000083
xref: BTO:0002157
xref: EHDAA2:0003083
xref: ZFA:0001591
is_a: UBERON:0001474 ! implied link automatically realized ! bone
disjoint_from: UBERON:0002514 ! intramembranous bone
relationship: replaces UBERON:0002418 ! cartilage
[Term]
id: UBERON:0002514
name: intramembranous bone
alt_id: UBERON:MA_0002837-ZFA_0001635
def: "Bone tissue forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]." [GO:0001957, Wikipedia:Intramembranous_ossification]
xref: ZFA:0001635
is_a: UBERON:0001474 ! implied link automatically realized ! bone
relationship: develops_from UBERON:0003104 ! mesenchyme
[Term]
id: UBERON:0002515
name: periosteum
alt_id: UBERON:MA_0002838-FMA_24041
def: "Periosteum is a membrane that lines the outer surface of all bones, except at the joints of long bones. Endosteum lines the inner surface of all bones. Periosteum consists of dense irregular connective tissue. Periosteum is divided into an outer 'fibrous layer' and inner 'cambium layer' (or 'osteogenic layer'). The fibrous layer contains fibroblasts, while the cambium layer contains progenitor cells that develop into osteoblasts. These osteoblasts are responsible for increasing the width of a long bone and the overall size of the other bone types. After a bone fracture the progenitor cells develop into osteoblasts and chondroblasts, which are essential to the healing process. As opposed to osseous tissue, periosteum has nociceptors nerve endings, making it very sensitive to manipulation. It also provides nourishment by providing the blood supply. Periosteum is attached to bone by strong collagenous fibers called Sharpey's fibres, which extend to the outer circumferential and interstitial lamellae. It also provides an attachment for muscles and tendons. Periosteum that covers the outer surface of the bones of the skull is known as 'pericranium'. [WP,unvetted]." [Wikipedia:Periosteum]
subset: uberon_slim
xref: BTO:0001022
xref: FMA:24041
xref: GAID:925
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cf/Bone_growth.png/200px-Bone_growth.png
xref: MA:0002838
xref: ncithesaurus:Periosteum
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001474 ! bone
[Term]
id: UBERON:0002516
name: epiphyseal plate
alt_id: UBERON:MA_0002839-FMA_75427
def: "a hyaline cartilage plate in the metaphysis at each end of a long bone. The plate is found in children and adolescents; in adults, who have stopped growing, the plate is replaced by an epiphyseal line." [Wikipedia:Epiphyseal_plate]
subset: uberon_slim
synonym: "epiphyseal cartilage" RELATED []
synonym: "epiphyseal growth plate" EXACT []
synonym: "epiphyseal growth plate cartilage" EXACT []
synonym: "growth plate" RELATED [MA:0002839]
synonym: "long bone epiphyseal plate" RELATED [MA:0002839]
xref: BTO:0000412
xref: FMA:75427
xref: GAID:191
xref: MA:0002839
is_a: UBERON:0001994 ! hyaline cartilage
is_a: UBERON:0003587 ! implied link automatically realized ! limb connective tissue
relationship: part_of UBERON:0001438 ! metaphysis
[Term]
id: UBERON:0002517
name: basicranium
alt_id: UBERON:MA_0002840-FMA_52801
def: "The base of skull is the most inferior area of the skull, composed of the endocranium and lower parts of the skull roof." [Wikipedia:Base_of_skull]
subset: uberon_slim
synonym: "base of skull" EXACT []
synonym: "cranial base" RELATED [MA:0002840]
xref: FMA:52801
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray193.png/200px-Gray193.png
xref: MA:0002840
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0002518
name: otolith organ
alt_id: UBERON:MA_0002841-ZFA_0000559
def: "saccule or utricle." [Wikipedia:Otolith_organ]
subset: uberon_slim
synonym: "otolith organs" RELATED [ZFA:0000559]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/cb/Bigotolith.jpg/200px-Bigotolith.jpg
xref: MA:0002841
xref: ZFA:0000559
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001862 ! vestibular labyrinth
[Term]
id: UBERON:0002519
name: otolithic membrane
alt_id: UBERON:MA_0002842-FMA_75573
def: "a gelatinous membrane located in the vestibular apparatus of the inner ear, and plays an essential role in the brain's interpretation of equilibrium. Both the saccular macula and utricular macula are covered by an otolithic membrane, thus providing the common name of 'the otoliths' to the untricle and saccule." [Wikipedia:Otolithic_membrane]
subset: uberon_slim
xref: FMA:75573
xref: GAID:884
xref: MA:0002842
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: part_of UBERON:0001862 ! vestibular labyrinth
[Term]
id: UBERON:0002520
name: submandibular lymph node
alt_id: UBERON:MA_0002843-FMA_61224
def: "The submandibular lymph nodes (submaxillary glands in older texts), three to six in number, are placed beneath the body of the mandible in the submaxillary triangle, and rest on the superficial surface of the submaxillary salivary gland. One gland, the middle gland of Stahr, which lies on the external maxillary artery as it turns over the mandible, is the most constant of the series; small lymph glands are sometimes found on the deep surface of the submaxillary salivary glands. The afferents of the submaxillary glands drain the medial palpebral commissure, the cheek, the side of the nose, the upper lip, the lateral part of the lower lip, the gums, and the anterior part of the margin of the tongue. Efferent vessels from the facial and submental glands also enter the submaxillary glands. Their efferent vessels pass to the superior deep cervical glands. [WP,unvetted]." [Wikipedia:Submandibular_lymph_node]
subset: uberon_slim
synonym: "level ib neck node" EXACT []
synonym: "submandibular node" EXACT []
xref: BTO:0000769
xref: FMA:61224
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4e/Illu_quiz_hn_03.jpg/200px-Illu_quiz_hn_03.jpg
xref: MA:0002843
is_a: UBERON:0003968 ! peripheral lymph node
[Term]
id: UBERON:0002521
name: elastic tissue
alt_id: UBERON:MA_0002853-FMA_20113
def: "Elastic fibers (or yellow fibers) are bundles of proteins found in extracellular matrix of connective tissue and produced by fibroblasts and smooth muscle cells in arteries. These fibers can stretch up to 1.5 times their length, and snap back to their original length when relaxed. Elastic fibers include elastin, elaunin and oxytalan. Elastic tissue is classified as 'connective tissue proper'. The elastic fiber is formed from the elastic microfibril and amorphous elastin. The microfibril scaffolds and organizes the deposition of amorphous elastin. Amorphous elastin forms from monomers of soluble tropoelastin which is insolubilized and crosslinked into amorphous elastin by lysyl oxidase. Lysyl oxidase reacts with specific lysine residues and by oxidative deamination generates reactive aldehydes and allysine. These reactive aldehydes and allysines can react with lysine and other allysine residues to crosslink and form desmosine, isodesmosine, and a number of other polyfunctional crosslinks that join surrounding elastin molecules to build an elastin matrix and elastic fiber. These unique crosslinks are responsible for elastin's elasticity. [WP,unvetted]." [Wikipedia:Elastic_tissue]
subset: uberon_slim
synonym: "elastic connective tissue" EXACT []
synonym: "textus connectivus elasticus" EXACT []
xref: FMA:20113
xref: GAID:926
xref: MA:0002853
is_a: UBERON:0002384 ! connective tissue
[Term]
id: UBERON:0002522
name: tunica media
alt_id: UBERON:MA_0002855-FMA_55590
def: "The tunica media (or just media) (middle coat) is the middle layer of an artery or vein. [WP,unvetted]." [Wikipedia:Tunica_media]
subset: uberon_slim
xref: FMA:55590
xref: GAID:170
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_artery.jpg/200px-Illu_artery.jpg
xref: MA:0002855
xref: ncithesaurus:Tunica_Media
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000055 ! vessel
relationship: surrounded_by UBERON:0005734 ! tunica externa of vessel
[Term]
id: UBERON:0002523
name: tunica intima
alt_id: UBERON:MA_0002861-FMA_55589
def: "The tunica intima (or just intima) is the innermost layer of an artery or vein. It is made up of one layer of endothelial cells and is supported by an internal elastic lamina. The endothelial cells are in direct contact with the blood flow. The inner coat (tunica intima) can be separated from the middle by a little maceration, or it may be stripped off in small pieces; but, on account of its friability, it cannot be separated as a complete membrane. It is a fine, transparent, colorless structure which is highly elastic, and, after death, is commonly corrugated into longitudinal wrinkles. The inner coat consists of: A layer of pavement endothelium, the cells of which are polygonal, oval, or fusiform, and have very distinct round or oval nuclei. This endothelium is brought into view most distinctly by staining with silver nitrate. A subendothelial layer, consisting of delicate connective tissue with branched cells lying in the interspaces of the tissue; in arteries of less than 2 mm. in diameter the subendothelial layer consists of a single stratum of stellate cells, and the connective tissue is only largely developed in vessels of a considerable size. An elastic or fenestrated layer, which consists of a membrane containing a net-work of elastic fibers, having principally a longitudinal direction, and in which, under the microscope, small elongated apertures or perforations may be seen, giving it a fenestrated appearance. It was therefore called by Henle the fenestrated membrane. This membrane forms the chief thickness of the inner coat, and can be separated into several layers, some of which present the appearance of a network of longitudinal elastic fibers, and others a more membranous character, marked by pale lines having a longitudinal direction. In minute arteries the fenestrated membrane is a very thin layer; but in the larger arteries, and especially in the aorta, it has a very considerable thickness. [WP,unvetted]." [Wikipedia:Tunica_intima]
subset: uberon_slim
xref: FMA:55589
xref: GAID:523
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/32/Illu_artery.jpg/200px-Illu_artery.jpg
xref: MA:0002861
xref: ncithesaurus:Tunica_Intima
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001981 ! blood vessel
relationship: surrounded_by UBERON:0002522 ! tunica media
[Term]
id: UBERON:0002524
name: mediastinal lymph node
alt_id: UBERON:MA_0002877-FMA_12774
synonym: "mediastinal node" EXACT []
xref: EFO:0001670
xref: FMA:12774
xref: MA:0002877
xref: ncithesaurus:Mediastinal_Lymph_Node
is_a: UBERON:0000029 ! lymph node
relationship: part_of UBERON:0003728 ! mediastinum
[Term]
id: UBERON:0002525
name: brachial lymph node
alt_id: UBERON:MA_0002878-FMA_44314
def: "the lymph nodes located along the brachial vein that receive drainage from most of the free upper limb and send efferent vessels to the central axillary lymph nodes." [MP:0005231, Wikipedia:Brachial_lymph_nodes]
xref: FMA:44314
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/73/Gray607.png/200px-Gray607.png
xref: MA:0002878
is_a: UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002526
name: lumbar lymph node
alt_id: UBERON:MA_0002879-FMA_84599
xref: FMA:84599
xref: MA:0002879
is_a: UBERON:0002507 ! abdominal lymph node
[Term]
id: UBERON:0002527
name: pancreatic lymph node
alt_id: UBERON:MA_0002881-FMA_16626
def: "A lymph node that is part of a pancreas [Obol]." [OBOL:automatic]
synonym: "lymph node of pancreas" EXACT [OBOL:automatic]
synonym: "pancreas lymph node" EXACT [OBOL:automatic]
synonym: "pancreatic node" EXACT []
synonym: "pyloric lymph node" RELATED [MA:0002881]
xref: FMA:16626
xref: MA:0002881
is_a: UBERON:0002507 ! abdominal lymph node
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001264
intersection_of: UBERON:0000029 ! lymph node
intersection_of: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0002528
name: sacral lymph node
alt_id: UBERON:MA_0002883-FMA_16655
synonym: "sacral node" EXACT []
xref: FMA:16655
xref: MA:0002883
is_a: UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002529
name: limb segment
alt_id: UBERON:MA_0002889-FMA_9661
def: "An organismal segment that is part of a limb [Obol]." [OBOL:automatic]
synonym: "limb region" EXACT []
synonym: "region of limb" EXACT []
synonym: "segment of limb" EXACT []
synonym: "subdivision of limb" EXACT []
xref: FMA:9661
xref: MA:0002889
is_a: UBERON:0000914 ! implied link automatically realized ! organismal segment
relationship: part_of UBERON:0002101
intersection_of: UBERON:0000914 ! organismal segment
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0002530
name: gland
alt_id: UBERON:MIAA_0000021
def: "A gland is an organ in an animal's body that synthesizes a substance for release such as hormones or breast milk, often into the bloodstream (endocrine gland) or into cavities inside the body or its outer surface (exocrine gland). A gland is an organ specialised for secretion[GO]." [Wikipedia:Gland]
comment: none of the major model vertebrate ontologies have a class called gland. Is this class superfluous? Also GO says secretion by tissue.
subset: uberon_slim
xref: AAO:0000212
xref: AEO:0000096
xref: BTO:0000522
xref: EFO:0000797
xref: EHDAA:2161
xref: EHDAA:2181
xref: EHDAA:2967
xref: EHDAA:4475
xref: EHDAA:6522
xref: EHDAA2:0003096
xref: FMA:86294
xref: galen:Gland
xref: HAO:0000375
xref: MAT:0000021
xref: MIAA:0000021
xref: ncithesaurus:Gland
xref: OpenCyc:Mx4rwP3vyJwpEbGdrcN5Y29ycA
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0002531
name: fin bud
alt_id: UBERON:MIAA_0000062-ZFA_0001383
comment: This class was created automatically from a combination of ontologies
xref: MAT:0000062
xref: MIAA:0000062
xref: TAO:0001383
xref: ZFA:0001383
is_a: UBERON:0004357 ! limb/fin bud
[Term]
id: UBERON:0002532
name: epiblast
alt_id: UBERON:MIAA_0000067-ZFA_0000018
def: "In embryology, the epiblast is a tissue type derived from the inner cell mass. It lies above the hypoblast. In mammalian embryogenesis, the columnar cells of the epiblast are adjacent to the trophoblast, while the cuboidal cells of the hypoblast are closer to the blastocoele. The epiblast, whilst referred to as the primary ectoderm, differentiates to form all three layers of the trilaminar germ disc in a process called gastrulation[WP]. The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation[ZFA]" [Wikipedia:Epiblast, ZFIN:curator]
comment: MP says - tissue that gives rise to the ectoderm, endoderm and mesoderm of the embryo proper. TODO - mammalian/vertebrate
subset: uberon_slim
synonym: "blastocyst" RELATED []
synonym: "embryonic epiblast" RELATED [MP:0003886]
xref: EHDAA:42
xref: EHDAA:75
xref: EHDAA2:0000444
xref: HOG:0000243
xref: MAT:0000067
xref: MIAA:0000067
xref: ncithesaurus:Epiblast
xref: TAO:0000018
xref: ZFA:0000018
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0000087 ! inner cell mass
relationship: part_of UBERON:0000091 ! bilaminar disc
relationship: part_of UBERON:0002541 ! germ ring
[Term]
id: UBERON:0002533
name: tail bud
alt_id: UBERON:MIAA_0000070-XAO_0000107-ZFA_0000077
def: "Rapidly proliferating mass of cells at the caudal extremity of the embryo. Its formation is reflected in a caudal carving of the posterior portion of the archenteric canal at NF stage 22. With its further outgrowth, the postanal gut primordium becomes stretched. Its lumen is in broad communication with the hindgut at NF stage 25." [ISBN:0815318960, OMD:tail+bud]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "tailbud" EXACT []
xref: BTO:0001445
xref: EFO:0002748
xref: EHDAA:1595
xref: EHDAA2:0001976
xref: HOG:0000201
xref: MAT:0000070
xref: MIAA:0000070
xref: TAO:0000077
xref: XAO:0000107
xref: XAO:1000007
xref: ZFA:0000077
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0002534
name: fin
alt_id: UBERON:MIAA_0000087-XAO_0000002-ZFA_0000108
def: "used to produce lift and thrust or to steer while traveling in water, air, or other fluid media. The first use of the word was for the limbs of fish, but has been extended to include other animal limbs and man-made devices. Examples: teleost fin, tadpole fin." [Wikipedia:Fin]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fins" RELATED []
xref: EFO:0000875
xref: MAT:0000087
xref: MIAA:0000087
xref: OpenCyc:Mx4rvVjcBZwpEbGdrcN5Y29ycA
xref: TAO:0000108
xref: XAO:0000002
xref: ZFA:0000108
is_a: UBERON:0003102 ! surface structure
is_a: UBERON:0004708 ! limb/fin
relationship: develops_from UBERON:0002531 ! fin bud
[Term]
id: UBERON:0002535
name: gill
alt_id: UBERON:MIAA_0000134-XAO_0000120-ZFA_0000354
def: "Anatomical surface structure found in many aquatic organisms. It is a respiration organ whose function is the extraction of oxygen from water and the excretion of carbon dioxide. The microscopic structure of a gill is such that it presents a very large surface area to the external environment. Gills usually consist of thin filaments of tissue, branches, or slender tufted processes which have a highly folded surface to increase surface area. A high surface area is crucial to the gas exchange of aquatic organisms as water contains only 1/20 parts dissolved Oxygen compared to air. With the exception of some aquatic insects, the filaments and lamellae (folds) contain blood or coelomic fluid, from which gases are exchanged through the thin walls. Oxygen is carried by the blood to other parts of the body. Carbon dioxide passes from the blood through the thin gill tissue into the water. Gills or gill-like organs, located in different parts of the body, are found in various groups of aquatic animals, including mollusks, crustaceans, insects, fish, and amphibians." [Wikipedia:Gill]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "external gill" RELATED []
synonym: "gills" RELATED []
xref: BTO:0000518
xref: EFO:0000933
xref: GAID:1218
xref: HOG:0001214
xref: MAT:0000134
xref: MIAA:0000134
xref: OpenCyc:Mx4rvVi9dZwpEbGdrcN5Y29ycA
xref: TAO:0000354
xref: XAO:0000120
xref: ZFA:0000354
is_a: UBERON:0003102 ! surface structure
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0002536
name: arthropod sensillum
alt_id: UBERON:MIAA_0000163-WBbt_0006929
def: "Sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organised unit with a largely bona-fide boundary.[FBbt]" [FBbt:00007152, WB:rynl, Wikipedia:Sensillum]
subset: uberon_slim
synonym: "sensillum" EXACT [FBbt:00007152, HAO:0000933]
xref: BTO:0001237
xref: EFO:0000939
xref: FBbt:00007152
xref: HAO:0000933
xref: MAT:0000163
xref: MIAA:0000163
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002537
name: hermaphrodite gonad
alt_id: UBERON:MIAA_0000165-WBbt_0005178
def: "organ in hermaphrodite animal that produces both ova and sperm." [WB:rynl]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hermaphrodite genitalia" EXACT [GO:0040035]
synonym: "hermaphrodite gonad" EXACT []
synonym: "ovotestis" RELATED []
xref: EFO:0000971
xref: MAT:0000165
xref: MIAA:0000165
xref: WBbt:0005178
is_a: UBERON:0000991 ! gonad
relationship: part_of UBERON:0000990 ! reproductive system
[Term]
id: UBERON:0002538
name: hatching gland
alt_id: UBERON:MIAA_0000180-XAO_0000034-ZFA_0000026
def: "A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. Kimmel et al, 1995." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "frontal gland" RELATED []
synonym: "hgg" RELATED []
xref: BTO:0000558
xref: EFO:0000863
xref: HOG:0000078
xref: MAT:0000180
xref: MIAA:0000180
xref: TAO:0000026
xref: XAO:0000034
xref: ZFA:0000026
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0002539
name: pharyngeal arch
alt_id: UBERON:MIAA_0000242-XAO_0000096-ZFA_0001306
def: "One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo." [NLM:branchial+arch, Wikipedia:Pharyngeal_arch]
comment: Numbered cranial to caudal. different in mammals. branchial arch = ZFA:0001613 pharyngeal arch 3-7. generally gill arch 1 = pharyngeal arch 3. terminology varies as to whether branchial arch follows gill or pharyngeal numbering
subset: uberon_slim
synonym: "branchial arch" EXACT [MP:0002884, XAO:0000099]
synonym: "gill arch" NARROW []
synonym: "pharyngeal arches" EXACT PLURAL []
synonym: "visceral arch" RELATED []
xref: BTO:0001785
xref: EFO:0000959
xref: HOG:0000155
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray41.png/200px-Gray41.png
xref: MAT:0000242
xref: MIAA:0000242
xref: ncithesaurus:Pharyngeal_Arch
xref: TAO:0001306
xref: XAO:0000096
xref: XAO:0000099
xref: ZFA:0001306
is_a: UBERON:0000481 ! multi-tissue structure
[Term]
id: UBERON:0002540
name: lateral line system
alt_id: UBERON:MIAA_0000249-XAO_0000095-ZFA_0000034
def: "a line of neuroblasts along the sides of fish and amphibia that detect vibrations and pressure changes // Surface structure that has as it parts the sense organs that detect vibrations carried through water, develops during late tailbud stage, and persists in the adult bearing elaborate dorsal and ventral components. // A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ISBN:0471209627, ISBN:0815318960, Wikipedia:Lateral_line_system, ZFIN:curator]
comment: TODO - DV with CARO
subset: uberon_slim
synonym: "lateral line stitches" RELATED []
synonym: "lateral-line organs" RELATED []
synonym: "ll" RELATED []
xref: AAO:0000269
xref: EFO:0000941
xref: HOG:0001243
xref: MAT:0000249
xref: MIAA:0000249
xref: NIF_GrossAnatomy:birnlex_976
xref: TAO:0000034
xref: XAO:0000095
xref: ZFA:0000034
is_a: UBERON:0001032 ! sensory system
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0002541
name: germ ring
alt_id: UBERON:MIAA_0000255-ZFA_0000111
comment: This class was created automatically from a combination of ontologies
xref: AAO:0000211
xref: MAT:0000255
xref: MIAA:0000255
xref: TAO:0000111
xref: ZFA:0000111
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0002542
name: scale
alt_id: UBERON:MIAA_0000257-ZFA_0000277
def: "A small rigid plate that grows out of an animal's skin to provide protection. In lepidopteran (butterfly and moth) species, scales are plates on the surface of the insect wing, and provide coloration. Scales are quite common and have evolved multiple times with varying structure and function." [Wikipedia:Scale_(zoology)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "scales" RELATED []
xref: EFO:0000960
xref: HAO:0000907
xref: MAT:0000257
xref: MIAA:0000257
xref: ncithesaurus:Scale
xref: OpenCyc:Mx4rvVi9M5wpEbGdrcN5Y29ycA
xref: TAO:0000277
xref: ZFA:0000277
is_a: UBERON:0000021 ! cutaneous appendage
relationship: part_of UBERON:0002067 ! dermis
[Term]
id: UBERON:0002543
name: median fin skeleton
alt_id: UBERON:MIAA_0000277-ZFA_0001123
comment: This class was created automatically from a combination of ontologies
synonym: "axial fin skeleton" EXACT []
synonym: "unpaired fin skeleton" RELATED []
xref: EFO:0000950
xref: MAT:0000277
xref: MIAA:0000277
xref: TAO:0001123
xref: ZFA:0001123
is_a: UBERON:0002090 ! postcranial axial skeleton
[Term]
id: UBERON:0002544
name: digit
alt_id: UBERON:MIAA_0000285-XAO_0003035-XAO_0003036
def: "one of several most distal parts of a limb, such as fingers or toes, present in many vertebrates[WP]." [Wikipedia:Digit_(anatomy)]
comment: todo homology ZFA:0001588-pectoral fin distal radial. Note: This term is a GAT in FMA. Note: we elect to place a strict taxon constraint on this class - this is controversial, and may be weakened later on - see [Wikipedia:Digit_(anatomy)#Evolution].
subset: uberon_slim
xref: EFO:0000881
xref: FMA:85518
xref: galen:Digit
xref: HOG:0000944
xref: MA:0000690
xref: MAT:0000285
xref: MIAA:0000285
xref: ncithesaurus:Digit
xref: OpenCyc:Mx4rvzLD_ZwpEbGdrcN5Y29ycA
xref: XAO:0003032
is_a: UBERON:0005881 ! distal limb segment
[Term]
id: UBERON:0002545
name: body ganglion
alt_id: UBERON:MIAA_0000344-WBbt_0005332
comment: This class was created automatically from a combination of ontologies
synonym: "trunk ganglion" RELATED []
xref: EFO:0000901
xref: MAT:0000344
xref: MIAA:0000344
xref: WBbt:0005332
is_a: UBERON:0000045 ! ganglion
[Term]
id: UBERON:0002546
name: cranial placode
alt_id: UBERON:MIAA_0000369-XAO_0000305
def: "An area of thickening in the embryonic epithelial layer where some organ or structure later develops. The term usually refers to cranial placodes, peripheral nervous system structures associated with the special senses and cranial ganglia. Placodes also develop in the formation of other structures, such as teeth and feathers." [Wikipedia:Placode]
comment: TODO - add subtypes. Consider more generic superclass, see also FBbt:00005495 primordium
synonym: "cranial placodes" RELATED []
synonym: "neurogenic placode" RELATED []
synonym: "placode" BROAD [Wikipedia:Placode]
xref: MAT:0000369
xref: MIAA:0000369
xref: XAO:0000305
xref: ZFA:0001309
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0002547
name: tadpole
alt_id: UBERON:MIAA_0000370-MIAA_0000400-XAO_1000008
def: "wholly aquatic larval stage in the life cycle of an amphibian, particularly of a frog or toad[WP]. XAO: The stages from feeding to the end of metamorphosis. Encompasses Weisz's first-form tadpole (equivalent to NF stages 45 to 49), second-form tadpole (NF 49 to 56) and third-form tadpole (NF 56 to 60-plus) stages." [ISBN:0471209627, ISSN:0003-276X, Wikipedia:Tadpole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "tadpole stage" RELATED []
xref: BTO:0001347
xref: MAT:0000370
xref: MIAA:0000370
xref: XAO:1000008
is_a: UBERON:0002548 ! larva
[Term]
id: UBERON:0002548
name: larva
alt_id: UBERON:MIAA_0000400-FBbt_00001727
def: "a distinct juvenile form many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle." [Wikipedia:Larva]
comment: This class was created automatically from a combination of ontologies. TODO: discriminate between stages and organisms
subset: uberon_slim
synonym: "ammocoete" NARROW [Wikipedia:Larva]
synonym: "bipinnaria" NARROW [Wikipedia:Larva]
synonym: "caterpillar" NARROW [Wikipedia:Larva]
synonym: "glochidium" NARROW [Wikipedia:Larva]
synonym: "grub" NARROW [Wikipedia:Larva]
synonym: "leptocephalus" NARROW [Wikipedia:Larva]
synonym: "maggot" NARROW [Wikipedia:Larva]
synonym: "naiad" NARROW [Wikipedia:Larva]
synonym: "naupilus" NARROW [Wikipedia:Larva]
synonym: "nymph" NARROW [Wikipedia:Larva]
synonym: "planula" NARROW [Wikipedia:Larva]
synonym: "tadpole" NARROW [Wikipedia:Larva]
synonym: "trochophore" NARROW [Wikipedia:Larva]
synonym: "veliger" NARROW [Wikipedia:Larva]
synonym: "wriggler" NARROW [Wikipedia:Larva]
synonym: "zoea" NARROW [Wikipedia:Larva]
xref: BTO:0000707
xref: FBbt:00001727
xref: HAO:0000459
xref: MIAA:0000400
xref: OpenCyc:Mx4rwQCBvZwpEbGdrcN5Y29ycA
is_a: UBERON:0000468 ! implied link automatically realized ! multi-cellular organism
relationship: existence_starts_and_ends_during UBERON:0000069
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_starts_and_ends_during UBERON:0000069 ! larval stage
[Term]
id: UBERON:0002549
name: ventral trigeminal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1001-FMA_72506
def: "The ventral trigeminothalamic tract serves as pain, temperature, and light touch pathway from the face, head and neck. It receives input from trigeminal nerve, facial nerve, glossopharyngeal nerve and vagus nerve. It receives discriminative tactile and pressure input from the contralateral principal sensory nucleus of CN V, which terminates in the ventral posteromedial nucleus of the thalamus. It then ascends to the contralateral sensory cortex via three neurons . [WP,unvetted]." [Wikipedia:Ventral_trigeminal_tract]
subset: uberon_slim
synonym: "anterior trigeminothalamic tract" EXACT [FMA:72506]
synonym: "trigeminal lemniscus-2" EXACT [FMA:72506]
synonym: "ventral crossed tract" EXACT [FMA:72506]
synonym: "ventral secondary ascending tract of v" EXACT []
synonym: "ventral trigeminal pathway" EXACT [FMA:72506]
synonym: "ventral trigeminothalamic tract" EXACT [FMA:72506]
xref: FMA:72506
xref: NIF_GrossAnatomy:birnlex_1001
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002550
name: anterior hypothalamic region
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1005-FMA_62027
synonym: "chiasmal zone" EXACT [FMA:62027]
xref: FMA:62027
xref: NIF_GrossAnatomy:birnlex_1005
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002551
name: interstitial nucleus of cajal
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1008-FMA_72432
synonym: "interstitial nucleus" EXACT [FMA:72432]
synonym: "interstitial nucleus of medial longitudinal fasciculus (crosby)" EXACT []
xref: FMA:72432
xref: NIF_GrossAnatomy:birnlex_1008
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002552
name: vestibulocerebellar tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1009-FMA_72508
def: "The vestibulocerebellar tract is a tract in the pontine tegmentum which connects the vestibular nerve and the cerebellar cortex. [WP,unvetted]." [Wikipedia:Vestibulocerebellar_tract]
subset: uberon_slim
synonym: "vestibulocerebellar fibers" EXACT [FMA:72508]
xref: FMA:72508
xref: NIF_GrossAnatomy:birnlex_1009
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0003023 ! pontine tegmentum
[Term]
id: UBERON:0002553
name: anatomical cavity
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1011-FMA_67552
def: "Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina." [FMA:67552]
synonym: "cavity" EXACT []
xref: EHDAA:2329
xref: EHDAA:2337
xref: EHDAA:2347
xref: EHDAA:293
xref: EHDAA:4741
xref: EHDAA:48
xref: EHDAA:638
xref: EHDAA:644
xref: FMA:67552
xref: galen:Cavity
xref: NIF_GrossAnatomy:birnlex_1011
is_a: UBERON:0000464 ! anatomical space
relationship: location_of UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0002554
name: regional part of superior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1014-FMA_85592
def: "A regional part of brain that is part of a superior colliculus [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of anterior colliculus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of anterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of cranial colliculus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of optic tectum" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of superior colliculus" EXACT [OBOL:automatic]
synonym: "anterior colliculus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "anterior colliculus biological structure of brain" EXACT [OBOL:automatic]
synonym: "anterior colliculus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "anterior colliculus brain biological structure" EXACT [OBOL:automatic]
synonym: "anterior colliculus neuraxis segment" EXACT [OBOL:automatic]
synonym: "anterior colliculus regional part of brain" EXACT [OBOL:automatic]
synonym: "anterior colliculus segment of brain" EXACT [OBOL:automatic]
synonym: "anterior corpus quadrigeminum anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "anterior corpus quadrigeminum biological structure of brain" EXACT [OBOL:automatic]
synonym: "anterior corpus quadrigeminum brain anatomical structure" EXACT [OBOL:automatic]
synonym: "anterior corpus quadrigeminum brain biological structure" EXACT [OBOL:automatic]
synonym: "anterior corpus quadrigeminum neuraxis segment" EXACT [OBOL:automatic]
synonym: "anterior corpus quadrigeminum regional part of brain" EXACT [OBOL:automatic]
synonym: "anterior corpus quadrigeminum segment of brain" EXACT [OBOL:automatic]
synonym: "biological structure of brain of anterior colliculus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of anterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "biological structure of brain of cranial colliculus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of optic tectum" EXACT [OBOL:automatic]
synonym: "biological structure of brain of superior colliculus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of anterior colliculus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of anterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of cranial colliculus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of optic tectum" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of superior colliculus" EXACT [OBOL:automatic]
synonym: "brain biological structure of anterior colliculus" EXACT [OBOL:automatic]
synonym: "brain biological structure of anterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "brain biological structure of cranial colliculus" EXACT [OBOL:automatic]
synonym: "brain biological structure of optic tectum" EXACT [OBOL:automatic]
synonym: "brain biological structure of superior colliculus" EXACT [OBOL:automatic]
synonym: "cranial colliculus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "cranial colliculus biological structure of brain" EXACT [OBOL:automatic]
synonym: "cranial colliculus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "cranial colliculus brain biological structure" EXACT [OBOL:automatic]
synonym: "cranial colliculus neuraxis segment" EXACT [OBOL:automatic]
synonym: "cranial colliculus regional part of brain" EXACT [OBOL:automatic]
synonym: "cranial colliculus segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of anterior colliculus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of anterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "neuraxis segment of cranial colliculus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of optic tectum" EXACT [OBOL:automatic]
synonym: "neuraxis segment of superior colliculus" EXACT [OBOL:automatic]
synonym: "optic tectum anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "optic tectum biological structure of brain" EXACT [OBOL:automatic]
synonym: "optic tectum brain anatomical structure" EXACT [OBOL:automatic]
synonym: "optic tectum brain biological structure" EXACT [OBOL:automatic]
synonym: "optic tectum neuraxis segment" EXACT [OBOL:automatic]
synonym: "optic tectum regional part of brain" EXACT [OBOL:automatic]
synonym: "optic tectum segment of brain" EXACT [OBOL:automatic]
synonym: "regional part of brain of anterior colliculus" EXACT [OBOL:automatic]
synonym: "regional part of brain of anterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "regional part of brain of cranial colliculus" EXACT [OBOL:automatic]
synonym: "regional part of brain of optic tectum" EXACT [OBOL:automatic]
synonym: "regional part of brain of superior colliculus" EXACT [OBOL:automatic]
synonym: "segment of brain of anterior colliculus" EXACT [OBOL:automatic]
synonym: "segment of brain of anterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "segment of brain of cranial colliculus" EXACT [OBOL:automatic]
synonym: "segment of brain of optic tectum" EXACT [OBOL:automatic]
synonym: "segment of brain of superior colliculus" EXACT [OBOL:automatic]
synonym: "segment of superior colliculus" EXACT [NIF_GrossAnatomy:birnlex_1014]
synonym: "superior colliculus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "superior colliculus biological structure of brain" EXACT [OBOL:automatic]
synonym: "superior colliculus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "superior colliculus brain biological structure" EXACT [OBOL:automatic]
synonym: "superior colliculus neuraxis segment" EXACT [OBOL:automatic]
synonym: "superior colliculus regional part of brain" EXACT [OBOL:automatic]
synonym: "superior colliculus segment" EXACT [FMA:85592]
synonym: "superior colliculus segment of brain" EXACT [OBOL:automatic]
xref: FMA:85592
xref: NIF_GrossAnatomy:birnlex_1014
is_a: UBERON:0002966 ! regional part of midbrain tectum
relationship: part_of UBERON:0001945
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001945 ! superior colliculus
[Term]
id: UBERON:0002555
name: intermediate hypothalamic region
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1015-FMA_62028
synonym: "intermediate hypothalamic area" EXACT [FMA:62028]
xref: FMA:62028
xref: NIF_GrossAnatomy:birnlex_1015
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: has_part UBERON:0001932 ! arcuate nucleus of hypothalamus
relationship: has_part UBERON:0001933 ! retrochiasmatic area
relationship: has_part UBERON:0001934 ! dorsomedial nucleus of hypothalamus
relationship: has_part UBERON:0001935 ! ventromedial nucleus of hypothalamus
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002556
name: corticotectal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1016-FMA_72419
synonym: "corticotectal fibers" EXACT [FMA:72419]
synonym: "corticotectal fibres" EXACT [FMA:72419]
xref: FMA:72419
xref: NIF_GrossAnatomy:birnlex_1016
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002557
name: linear nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1018-FMA_72436
xref: FMA:72436
xref: NIF_GrossAnatomy:birnlex_1018
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002558
name: organ cavity
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1019-FMA_12237
synonym: "cavity of organ" EXACT [FMA:12237]
xref: FMA:12237
xref: NIF_GrossAnatomy:birnlex_1019
is_a: UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0002559
name: medullary reticular formation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1020-FMA_72241
def: "The reticular formation is a brain nucleus located in the medulla oblongata" [GO:0021723]
synonym: "bulb reticular formation" EXACT [OBOL:automatic]
synonym: "bulbar reticular formation" EXACT [FMA:72241]
synonym: "medulla oblongata reticular formation" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata reticular formation" EXACT [OBOL:automatic]
synonym: "medullary reticular nucleus" EXACT [MA:0001049]
synonym: "metepencephalon reticular formation" EXACT [OBOL:automatic]
synonym: "reticular formation" BROAD [ZFA:0000421]
synonym: "reticular formation of bulb" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla" EXACT [FMA:72241]
synonym: "reticular formation of medulla oblongata" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "reticular formation of metepencephalon" EXACT [OBOL:automatic]
synonym: "rhombencephalic reticular formation" EXACT [GO:0021723]
xref: FMA:72241
xref: GAID:588
xref: MA:0001049
xref: NIF_GrossAnatomy:birnlex_1020
xref: TAO:0000421
xref: ZFA:0000421
is_a: UBERON:0002275 ! reticular formation
relationship: part_of UBERON:0001896
intersection_of: UBERON:0002275 ! reticular formation
intersection_of: part_of UBERON:0001896 ! medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002560
name: temporal operculum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1025-FMA_74891
synonym: "facies supratemporalis" EXACT [FMA:74891]
xref: FMA:74891
xref: NIF_GrossAnatomy:birnlex_1025
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002561
name: neuraxis cavity
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1029-FMA_75007
synonym: "cavity of ventricular system of neuraxis" EXACT [FMA:75007]
synonym: "neuraxis cavity" EXACT [FMA:75007]
xref: FMA:75007
xref: NIF_GrossAnatomy:birnlex_1029
is_a: UBERON:0002558 ! organ cavity
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0002562
name: superior frontal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1030-FMA_83755
def: "The superior frontal sulcus is a sulcus between the superior frontal gyrus and the middle frontal gyrus. [WP,unvetted]." [Wikipedia:Superior_frontal_sulcus]
subset: uberon_slim
synonym: "sulcus f1" EXACT [FMA:83755]
synonym: "superior frontal fissure" EXACT [FMA:83755]
xref: FMA:83755
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray726_Superior_frontal_sulcus.svg/200px-Gray726_Superior_frontal_sulcus.svg.png
xref: ncithesaurus:Superior_Frontal_Sulcus
xref: NIF_GrossAnatomy:birnlex_1030
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002563
name: central nucleus of inferior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1035-FMA_72413
synonym: "chief nucleus of inferior colliculus" EXACT [FMA:72413]
synonym: "inferior colliculus, central nucleus" EXACT [FMA:72413]
synonym: "nucleus of inferior colliculus (crosby)" EXACT []
xref: FMA:72413
xref: NIF_GrossAnatomy:birnlex_1035
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0002564
name: lateral orbital gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1036-FMA_62418
xref: FMA:62418
xref: NIF_GrossAnatomy:birnlex_1036
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002565
name: olivary pretectal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1037-FMA_72405
def: "The pretectum, also known as the pretectal area, is a region of neurons found between the thalamus and midbrain. It receives binocular sensory input from retinal ganglion cells of the eyes, and is the region responsible for maintaining the pupillary light reflex. [WP,unvetted]." [Wikipedia:Olivary_pretectal_nucleus]
subset: uberon_slim
synonym: "anterior pretectal nucleus" EXACT [FMA:72405]
synonym: "olivary nucleus of superior colliculus" EXACT [FMA:72405]
synonym: "pretectal olivary nucleus" EXACT [FMA:72405]
xref: FMA:72405
xref: NIF_GrossAnatomy:birnlex_1037
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0002566
name: superior precentral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1038-FMA_83763
synonym: "precentral dimple" EXACT [FMA:83763]
synonym: "superior part of precentral fissure" EXACT [FMA:83763]
xref: FMA:83763
xref: NIF_GrossAnatomy:birnlex_1038
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002567
name: basal part of pons
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1043-FMA_72244
synonym: "basal portion of pons" EXACT [FMA:72244]
synonym: "base of pons" EXACT [FMA:72244]
synonym: "basilar part of pons" EXACT [FMA:72244]
synonym: "pons proper" EXACT [FMA:72244]
synonym: "ventral portion of pons" EXACT [FMA:72244]
xref: FMA:72244
xref: NIF_GrossAnatomy:birnlex_1043
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: has_part UBERON:0002152 ! middle cerebellar peduncle
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002568
name: amiculum of dentate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1044-FMA_72546
synonym: "dentate nuclear amiculum" EXACT [FMA:72546]
xref: FMA:72546
xref: NIF_GrossAnatomy:birnlex_1044
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002317 ! implied link automatically realized ! white matter of cerebellum
relationship: part_of UBERON:0002132 ! dentate nucleus
[Term]
id: UBERON:0002569
name: transverse temporal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1045-FMA_83782
xref: FMA:83782
xref: NIF_GrossAnatomy:birnlex_1045
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002570
name: medial orbital gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1046-FMA_62419
xref: FMA:62419
xref: NIF_GrossAnatomy:birnlex_1046
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002571
name: external nucleus of inferior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1047-FMA_72412
xref: FMA:72412
xref: NIF_GrossAnatomy:birnlex_1047
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0002572
name: principal pretectal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1048-FMA_72402
xref: FMA:72402
xref: NIF_GrossAnatomy:birnlex_1048
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0002573
name: pontine reticular formation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1050-FMA_68876
def: "The reticular formation is a part of the brain that is involved in actions such as awaking/sleeping cycle, and filtering incoming stimuli to discriminate irrelevant background stimuli. It is essential for governing some of the basic functions of higher organisms, and is one of the phylogenetically oldest portions of the brain. [WP,unvetted]." [Wikipedia:Pontine_reticular_formation]
subset: uberon_slim
synonym: "pons of varolius reticular formation" EXACT [OBOL:automatic]
synonym: "pons reticular formation" EXACT [OBOL:automatic]
synonym: "reticular formation of pons" EXACT [FMA:68876]
synonym: "reticular formation of pons of varolius" EXACT [OBOL:automatic]
xref: FMA:68876
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Gray701.png/200px-Gray701.png
xref: NIF_GrossAnatomy:birnlex_1050
is_a: UBERON:0002275 ! reticular formation
relationship: part_of UBERON:0000988
intersection_of: UBERON:0002275 ! reticular formation
intersection_of: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002574
name: regional part of inferior olivary complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1052-FMA_71259
def: "A regional part of brain that is part of a inferior olivary complex [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of inferior olivary complex" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of inferior olivary nuclear complex" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of inferior olivary nucleus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of inferior olive" EXACT [OBOL:automatic]
synonym: "biological structure of brain of inferior olivary complex" EXACT [OBOL:automatic]
synonym: "biological structure of brain of inferior olivary nuclear complex" EXACT [OBOL:automatic]
synonym: "biological structure of brain of inferior olivary nucleus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of inferior olive" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of inferior olivary complex" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of inferior olivary nuclear complex" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of inferior olivary nucleus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of inferior olive" EXACT [OBOL:automatic]
synonym: "brain biological structure of inferior olivary complex" EXACT [OBOL:automatic]
synonym: "brain biological structure of inferior olivary nuclear complex" EXACT [OBOL:automatic]
synonym: "brain biological structure of inferior olivary nucleus" EXACT [OBOL:automatic]
synonym: "brain biological structure of inferior olive" EXACT [OBOL:automatic]
synonym: "inferior olivary complex anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary complex biological structure of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary complex brain anatomical structure" EXACT [OBOL:automatic]
synonym: "inferior olivary complex brain biological structure" EXACT [OBOL:automatic]
synonym: "inferior olivary complex neuraxis segment" EXACT [OBOL:automatic]
synonym: "inferior olivary complex regional part of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary complex segment" EXACT [FMA:71259]
synonym: "inferior olivary complex segment of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary nuclear complex anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary nuclear complex biological structure of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary nuclear complex brain anatomical structure" EXACT [OBOL:automatic]
synonym: "inferior olivary nuclear complex brain biological structure" EXACT [OBOL:automatic]
synonym: "inferior olivary nuclear complex neuraxis segment" EXACT [OBOL:automatic]
synonym: "inferior olivary nuclear complex regional part of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary nuclear complex segment of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary nucleus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary nucleus biological structure of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary nucleus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "inferior olivary nucleus brain biological structure" EXACT [OBOL:automatic]
synonym: "inferior olivary nucleus neuraxis segment" EXACT [OBOL:automatic]
synonym: "inferior olivary nucleus regional part of brain" EXACT [OBOL:automatic]
synonym: "inferior olivary nucleus segment of brain" EXACT [OBOL:automatic]
synonym: "inferior olive anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "inferior olive biological structure of brain" EXACT [OBOL:automatic]
synonym: "inferior olive brain anatomical structure" EXACT [OBOL:automatic]
synonym: "inferior olive brain biological structure" EXACT [OBOL:automatic]
synonym: "inferior olive neuraxis segment" EXACT [OBOL:automatic]
synonym: "inferior olive regional part of brain" EXACT [OBOL:automatic]
synonym: "inferior olive segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of inferior olivary complex" EXACT [OBOL:automatic]
synonym: "neuraxis segment of inferior olivary nuclear complex" EXACT [OBOL:automatic]
synonym: "neuraxis segment of inferior olivary nucleus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of inferior olive" EXACT [OBOL:automatic]
synonym: "regional part of brain of inferior olivary complex" EXACT [OBOL:automatic]
synonym: "regional part of brain of inferior olivary nuclear complex" EXACT [OBOL:automatic]
synonym: "regional part of brain of inferior olivary nucleus" EXACT [OBOL:automatic]
synonym: "regional part of brain of inferior olive" EXACT [OBOL:automatic]
synonym: "segment of brain of inferior olivary complex" EXACT [OBOL:automatic]
synonym: "segment of brain of inferior olivary nuclear complex" EXACT [OBOL:automatic]
synonym: "segment of brain of inferior olivary nucleus" EXACT [OBOL:automatic]
synonym: "segment of brain of inferior olive" EXACT [OBOL:automatic]
synonym: "segment of inferior olivary complex" EXACT [NIF_GrossAnatomy:birnlex_1052]
xref: FMA:71259
xref: NIF_GrossAnatomy:birnlex_1052
is_a: UBERON:0002678 ! regional part of medulla oblongata
relationship: part_of UBERON:0002127
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002127 ! inferior olivary complex
[Term]
id: UBERON:0002575
name: posterior orbital gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1054-FMA_80184
xref: FMA:80184
xref: NIF_GrossAnatomy:birnlex_1054
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002576
name: temporal pole
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1055-FMA_74890
def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]." [Wikipedia:Temporal_pole]
subset: uberon_slim
xref: FMA:74890
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Human_brain_lateral_view_description.JPG/200px-Human_brain_lateral_view_description.JPG
xref: NIF_GrossAnatomy:birnlex_1055
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002577
name: pericentral nucleus of inferior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1056-FMA_72411
synonym: "cortex of inferior colliculus" EXACT [FMA:72411]
xref: FMA:72411
xref: NIF_GrossAnatomy:birnlex_1056
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0002578
name: sublentiform nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1057-FMA_72404
xref: FMA:72404
xref: NIF_GrossAnatomy:birnlex_1057
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0002579
name: regional part of medullary reticular formation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1060-FMA_73730
def: "A regional part of brain that is part of a medullary reticular formation [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of bulb reticular formation" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of bulbar reticular formation" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of medulla oblongata reticular formation" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of medulla oblonmgata reticular formation" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of medullary reticular formation" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of medullary reticular nucleus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of metepencephalon reticular formation" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of reticular formation of bulb" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of reticular formation of medulla" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of reticular formation of medulla oblongata" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of reticular formation of metepencephalon" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of rhombencephalic reticular formation" EXACT [OBOL:automatic]
synonym: "biological structure of brain of bulb reticular formation" EXACT [OBOL:automatic]
synonym: "biological structure of brain of bulbar reticular formation" EXACT [OBOL:automatic]
synonym: "biological structure of brain of medulla oblongata reticular formation" EXACT [OBOL:automatic]
synonym: "biological structure of brain of medulla oblonmgata reticular formation" EXACT [OBOL:automatic]
synonym: "biological structure of brain of medullary reticular formation" EXACT [OBOL:automatic]
synonym: "biological structure of brain of medullary reticular nucleus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of metepencephalon reticular formation" EXACT [OBOL:automatic]
synonym: "biological structure of brain of reticular formation of bulb" EXACT [OBOL:automatic]
synonym: "biological structure of brain of reticular formation of medulla" EXACT [OBOL:automatic]
synonym: "biological structure of brain of reticular formation of medulla oblongata" EXACT [OBOL:automatic]
synonym: "biological structure of brain of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "biological structure of brain of reticular formation of metepencephalon" EXACT [OBOL:automatic]
synonym: "biological structure of brain of rhombencephalic reticular formation" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of bulb reticular formation" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of bulbar reticular formation" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of medulla oblongata reticular formation" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of medulla oblonmgata reticular formation" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of medullary reticular formation" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of medullary reticular nucleus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of metepencephalon reticular formation" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of reticular formation of bulb" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of reticular formation of medulla" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of reticular formation of medulla oblongata" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of reticular formation of metepencephalon" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of rhombencephalic reticular formation" EXACT [OBOL:automatic]
synonym: "brain biological structure of bulb reticular formation" EXACT [OBOL:automatic]
synonym: "brain biological structure of bulbar reticular formation" EXACT [OBOL:automatic]
synonym: "brain biological structure of medulla oblongata reticular formation" EXACT [OBOL:automatic]
synonym: "brain biological structure of medulla oblonmgata reticular formation" EXACT [OBOL:automatic]
synonym: "brain biological structure of medullary reticular formation" EXACT [OBOL:automatic]
synonym: "brain biological structure of medullary reticular nucleus" EXACT [OBOL:automatic]
synonym: "brain biological structure of metepencephalon reticular formation" EXACT [OBOL:automatic]
synonym: "brain biological structure of reticular formation of bulb" EXACT [OBOL:automatic]
synonym: "brain biological structure of reticular formation of medulla" EXACT [OBOL:automatic]
synonym: "brain biological structure of reticular formation of medulla oblongata" EXACT [OBOL:automatic]
synonym: "brain biological structure of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "brain biological structure of reticular formation of metepencephalon" EXACT [OBOL:automatic]
synonym: "brain biological structure of rhombencephalic reticular formation" EXACT [OBOL:automatic]
synonym: "bulb reticular formation anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "bulb reticular formation biological structure of brain" EXACT [OBOL:automatic]
synonym: "bulb reticular formation brain anatomical structure" EXACT [OBOL:automatic]
synonym: "bulb reticular formation brain biological structure" EXACT [OBOL:automatic]
synonym: "bulb reticular formation neuraxis segment" EXACT [OBOL:automatic]
synonym: "bulb reticular formation regional part of brain" EXACT [OBOL:automatic]
synonym: "bulb reticular formation segment of brain" EXACT [OBOL:automatic]
synonym: "bulbar reticular formation anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "bulbar reticular formation biological structure of brain" EXACT [OBOL:automatic]
synonym: "bulbar reticular formation brain anatomical structure" EXACT [OBOL:automatic]
synonym: "bulbar reticular formation brain biological structure" EXACT [OBOL:automatic]
synonym: "bulbar reticular formation neuraxis segment" EXACT [OBOL:automatic]
synonym: "bulbar reticular formation regional part of brain" EXACT [OBOL:automatic]
synonym: "bulbar reticular formation segment of brain" EXACT [OBOL:automatic]
synonym: "medulla oblongata reticular formation anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "medulla oblongata reticular formation biological structure of brain" EXACT [OBOL:automatic]
synonym: "medulla oblongata reticular formation brain anatomical structure" EXACT [OBOL:automatic]
synonym: "medulla oblongata reticular formation brain biological structure" EXACT [OBOL:automatic]
synonym: "medulla oblongata reticular formation neuraxis segment" EXACT [OBOL:automatic]
synonym: "medulla oblongata reticular formation regional part of brain" EXACT [OBOL:automatic]
synonym: "medulla oblongata reticular formation segment of brain" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata reticular formation anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata reticular formation biological structure of brain" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata reticular formation brain anatomical structure" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata reticular formation brain biological structure" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata reticular formation neuraxis segment" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata reticular formation regional part of brain" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata reticular formation segment of brain" EXACT [OBOL:automatic]
synonym: "medullary reticular formation anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "medullary reticular formation biological structure of brain" EXACT [OBOL:automatic]
synonym: "medullary reticular formation brain anatomical structure" EXACT [OBOL:automatic]
synonym: "medullary reticular formation brain biological structure" EXACT [OBOL:automatic]
synonym: "medullary reticular formation neuraxis segment" EXACT [OBOL:automatic]
synonym: "medullary reticular formation regional part of brain" EXACT [OBOL:automatic]
synonym: "medullary reticular formation segment" EXACT [FMA:73730]
synonym: "medullary reticular formation segment of brain" EXACT [OBOL:automatic]
synonym: "medullary reticular nucleus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "medullary reticular nucleus biological structure of brain" EXACT [OBOL:automatic]
synonym: "medullary reticular nucleus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "medullary reticular nucleus brain biological structure" EXACT [OBOL:automatic]
synonym: "medullary reticular nucleus neuraxis segment" EXACT [OBOL:automatic]
synonym: "medullary reticular nucleus regional part of brain" EXACT [OBOL:automatic]
synonym: "medullary reticular nucleus segment of brain" EXACT [OBOL:automatic]
synonym: "metepencephalon reticular formation anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "metepencephalon reticular formation biological structure of brain" EXACT [OBOL:automatic]
synonym: "metepencephalon reticular formation brain anatomical structure" EXACT [OBOL:automatic]
synonym: "metepencephalon reticular formation brain biological structure" EXACT [OBOL:automatic]
synonym: "metepencephalon reticular formation neuraxis segment" EXACT [OBOL:automatic]
synonym: "metepencephalon reticular formation regional part of brain" EXACT [OBOL:automatic]
synonym: "metepencephalon reticular formation segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of bulb reticular formation" EXACT [OBOL:automatic]
synonym: "neuraxis segment of bulbar reticular formation" EXACT [OBOL:automatic]
synonym: "neuraxis segment of medulla oblongata reticular formation" EXACT [OBOL:automatic]
synonym: "neuraxis segment of medulla oblonmgata reticular formation" EXACT [OBOL:automatic]
synonym: "neuraxis segment of medullary reticular formation" EXACT [OBOL:automatic]
synonym: "neuraxis segment of medullary reticular nucleus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of metepencephalon reticular formation" EXACT [OBOL:automatic]
synonym: "neuraxis segment of reticular formation of bulb" EXACT [OBOL:automatic]
synonym: "neuraxis segment of reticular formation of medulla" EXACT [OBOL:automatic]
synonym: "neuraxis segment of reticular formation of medulla oblongata" EXACT [OBOL:automatic]
synonym: "neuraxis segment of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "neuraxis segment of reticular formation of metepencephalon" EXACT [OBOL:automatic]
synonym: "neuraxis segment of rhombencephalic reticular formation" EXACT [OBOL:automatic]
synonym: "regional part of brain of bulb reticular formation" EXACT [OBOL:automatic]
synonym: "regional part of brain of bulbar reticular formation" EXACT [OBOL:automatic]
synonym: "regional part of brain of medulla oblongata reticular formation" EXACT [OBOL:automatic]
synonym: "regional part of brain of medulla oblonmgata reticular formation" EXACT [OBOL:automatic]
synonym: "regional part of brain of medullary reticular formation" EXACT [OBOL:automatic]
synonym: "regional part of brain of medullary reticular nucleus" EXACT [OBOL:automatic]
synonym: "regional part of brain of metepencephalon reticular formation" EXACT [OBOL:automatic]
synonym: "regional part of brain of reticular formation of bulb" EXACT [OBOL:automatic]
synonym: "regional part of brain of reticular formation of medulla" EXACT [OBOL:automatic]
synonym: "regional part of brain of reticular formation of medulla oblongata" EXACT [OBOL:automatic]
synonym: "regional part of brain of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "regional part of brain of reticular formation of metepencephalon" EXACT [OBOL:automatic]
synonym: "regional part of brain of rhombencephalic reticular formation" EXACT [OBOL:automatic]
synonym: "reticular formation of bulb anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of bulb biological structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of bulb brain anatomical structure" EXACT [OBOL:automatic]
synonym: "reticular formation of bulb brain biological structure" EXACT [OBOL:automatic]
synonym: "reticular formation of bulb neuraxis segment" EXACT [OBOL:automatic]
synonym: "reticular formation of bulb regional part of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of bulb segment of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla biological structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla brain anatomical structure" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla brain biological structure" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla neuraxis segment" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblongata anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblongata biological structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblongata brain anatomical structure" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblongata brain biological structure" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblongata neuraxis segment" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblongata regional part of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblongata segment of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblonmgata anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblonmgata biological structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblonmgata brain anatomical structure" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblonmgata brain biological structure" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblonmgata neuraxis segment" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblonmgata regional part of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla oblonmgata segment of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla regional part of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of medulla segment of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of metepencephalon anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of metepencephalon biological structure of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of metepencephalon brain anatomical structure" EXACT [OBOL:automatic]
synonym: "reticular formation of metepencephalon brain biological structure" EXACT [OBOL:automatic]
synonym: "reticular formation of metepencephalon neuraxis segment" EXACT [OBOL:automatic]
synonym: "reticular formation of metepencephalon regional part of brain" EXACT [OBOL:automatic]
synonym: "reticular formation of metepencephalon segment of brain" EXACT [OBOL:automatic]
synonym: "rhombencephalic reticular formation anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "rhombencephalic reticular formation biological structure of brain" EXACT [OBOL:automatic]
synonym: "rhombencephalic reticular formation brain anatomical structure" EXACT [OBOL:automatic]
synonym: "rhombencephalic reticular formation brain biological structure" EXACT [OBOL:automatic]
synonym: "rhombencephalic reticular formation neuraxis segment" EXACT [OBOL:automatic]
synonym: "rhombencephalic reticular formation regional part of brain" EXACT [OBOL:automatic]
synonym: "rhombencephalic reticular formation segment of brain" EXACT [OBOL:automatic]
synonym: "segment of brain of bulb reticular formation" EXACT [OBOL:automatic]
synonym: "segment of brain of bulbar reticular formation" EXACT [OBOL:automatic]
synonym: "segment of brain of medulla oblongata reticular formation" EXACT [OBOL:automatic]
synonym: "segment of brain of medulla oblonmgata reticular formation" EXACT [OBOL:automatic]
synonym: "segment of brain of medullary reticular formation" EXACT [OBOL:automatic]
synonym: "segment of brain of medullary reticular nucleus" EXACT [OBOL:automatic]
synonym: "segment of brain of metepencephalon reticular formation" EXACT [OBOL:automatic]
synonym: "segment of brain of reticular formation of bulb" EXACT [OBOL:automatic]
synonym: "segment of brain of reticular formation of medulla" EXACT [OBOL:automatic]
synonym: "segment of brain of reticular formation of medulla oblongata" EXACT [OBOL:automatic]
synonym: "segment of brain of reticular formation of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "segment of brain of reticular formation of metepencephalon" EXACT [OBOL:automatic]
synonym: "segment of brain of rhombencephalic reticular formation" EXACT [OBOL:automatic]
synonym: "segment of medullary reticular formation" EXACT [NIF_GrossAnatomy:birnlex_1060]
xref: FMA:73730
xref: NIF_GrossAnatomy:birnlex_1060
is_a: UBERON:0002678 ! regional part of medulla oblongata
relationship: part_of UBERON:0002559
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002559 ! medullary reticular formation
[Term]
id: UBERON:0002580
name: brachium of superior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1065-FMA_72417
def: "The brachium of superior colliculus (or superior brachium) extends lateralward from the superior colliculus, and, passing between the pulvinar and medial geniculate body, is partly continued into an eminence called the lateral geniculate body, and partly into the optic tract. [WP,unvetted]." [Wikipedia:Brachium_of_superior_colliculus]
subset: uberon_slim
synonym: "superior brachium" EXACT [FMA:72417]
synonym: "superior collicular brachium" EXACT [FMA:72417]
synonym: "superior colliculus brachium" EXACT [FMA:72417]
synonym: "superior quadrigeminal brachium" EXACT [FMA:72417]
xref: FMA:72417
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Human_brainstem-thalamus_posterior_view_description.JPG/200px-Human_brainstem-thalamus_posterior_view_description.JPG
xref: NIF_GrossAnatomy:birnlex_1065
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001945 ! superior colliculus
[Term]
id: UBERON:0002581
name: postcentral gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1070-FMA_61896
def: "The lateral postcentral gyrus is a prominent structure in the parietal lobe of the human brain and an important landmark. It was initially defined from surface stimulation studies of Penfield, and parallel surface potential studies of Bard, Woolsey, and Marshall. Although initially defined to be roughly the same as Brodmann areas 3, 1 and 2, more recent work by Kaas has suggested that for homogeny with other sensory fields only area 3 should be referred to as 'primary somatosensory cortex', as it received the bulk of the thalamocortical projection from the sensory input fields. [WP,unvetted]." [Wikipedia:Postcentral_gyrus]
subset: uberon_slim
synonym: "postcentral convolution" EXACT [FMA:61896]
synonym: "posterior central gyrus" EXACT [FMA:61896]
synonym: "postrolandic gyrus" EXACT [FMA:61896]
xref: EFO:0001383
xref: FMA:61896
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Postcentral_gyrus.png/200px-Postcentral_gyrus.png
xref: ncithesaurus:Postcentral_Gyrus
xref: NIF_GrossAnatomy:birnlex_1070
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001872 ! parietal lobe
[Term]
id: UBERON:0002582
name: anterior calcarine sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1072-FMA_83750
synonym: "anterior calcarine fissure" EXACT [FMA:83750]
xref: FMA:83750
xref: NIF_GrossAnatomy:birnlex_1072
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002583
name: commissure of superior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1073-FMA_72418
def: "A commissure that is part of a superior colliculus [Obol]." [OBOL:automatic]
synonym: "anterior colliculus commissure" EXACT [OBOL:automatic]
synonym: "anterior corpus quadrigeminum commissure" EXACT [OBOL:automatic]
synonym: "commissure of anterior colliculus" EXACT [OBOL:automatic]
synonym: "commissure of anterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "commissure of cranial colliculus" EXACT [OBOL:automatic]
synonym: "commissure of optic tectum" EXACT [OBOL:automatic]
synonym: "commissure of superior colliculi" EXACT [FMA:72418]
synonym: "cranial colliculus commissure" EXACT [OBOL:automatic]
synonym: "optic tectum commissure" EXACT [OBOL:automatic]
synonym: "superior colliculus commissure" EXACT [FMA:72418]
xref: FMA:72418
xref: NIF_GrossAnatomy:birnlex_1073
is_a: UBERON:0001020 ! commissure
is_a: UBERON:0005970 ! implied link automatically realized ! brain commissure
relationship: part_of UBERON:0001945
intersection_of: UBERON:0001020 ! commissure
intersection_of: part_of UBERON:0001945 ! superior colliculus
relationship: part_of UBERON:0001945 ! superior colliculus
[Term]
id: UBERON:0002584
name: regional part of vestibular nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1080-FMA_71267
def: "A regional part of brain that is part of a vestibular nuclear complex [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of vestibular nuclear complex" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of vestibular nuclei" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of vestibular nucleus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of vestibular nuclear complex" EXACT [OBOL:automatic]
synonym: "biological structure of brain of vestibular nuclei" EXACT [OBOL:automatic]
synonym: "biological structure of brain of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic]
synonym: "biological structure of brain of vestibular nucleus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of vestibular nuclear complex" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of vestibular nuclei" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of vestibular nucleus" EXACT [OBOL:automatic]
synonym: "brain biological structure of vestibular nuclear complex" EXACT [OBOL:automatic]
synonym: "brain biological structure of vestibular nuclei" EXACT [OBOL:automatic]
synonym: "brain biological structure of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic]
synonym: "brain biological structure of vestibular nucleus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of vestibular nuclear complex" EXACT [OBOL:automatic]
synonym: "neuraxis segment of vestibular nuclei" EXACT [OBOL:automatic]
synonym: "neuraxis segment of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic]
synonym: "neuraxis segment of vestibular nucleus" EXACT [OBOL:automatic]
synonym: "regional part of brain of vestibular nuclear complex" EXACT [OBOL:automatic]
synonym: "regional part of brain of vestibular nuclei" EXACT [OBOL:automatic]
synonym: "regional part of brain of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic]
synonym: "regional part of brain of vestibular nucleus" EXACT [OBOL:automatic]
synonym: "segment of brain of vestibular nuclear complex" EXACT [OBOL:automatic]
synonym: "segment of brain of vestibular nuclei" EXACT [OBOL:automatic]
synonym: "segment of brain of vestibular nuclei in medulla oblongata" EXACT [OBOL:automatic]
synonym: "segment of brain of vestibular nucleus" EXACT [OBOL:automatic]
synonym: "segment of vestibular nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1080]
synonym: "vestibular nuclear complex anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclear complex biological structure of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclear complex brain anatomical structure" EXACT [OBOL:automatic]
synonym: "vestibular nuclear complex brain biological structure" EXACT [OBOL:automatic]
synonym: "vestibular nuclear complex neuraxis segment" EXACT [OBOL:automatic]
synonym: "vestibular nuclear complex regional part of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclear complex segment" EXACT [FMA:71267]
synonym: "vestibular nuclear complex segment of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclei anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclei biological structure of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclei brain anatomical structure" EXACT [OBOL:automatic]
synonym: "vestibular nuclei brain biological structure" EXACT [OBOL:automatic]
synonym: "vestibular nuclei in medulla oblongata anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclei in medulla oblongata biological structure of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclei in medulla oblongata brain anatomical structure" EXACT [OBOL:automatic]
synonym: "vestibular nuclei in medulla oblongata brain biological structure" EXACT [OBOL:automatic]
synonym: "vestibular nuclei in medulla oblongata neuraxis segment" EXACT [OBOL:automatic]
synonym: "vestibular nuclei in medulla oblongata regional part of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclei in medulla oblongata segment of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclei neuraxis segment" EXACT [OBOL:automatic]
synonym: "vestibular nuclei regional part of brain" EXACT [OBOL:automatic]
synonym: "vestibular nuclei segment of brain" EXACT [OBOL:automatic]
synonym: "vestibular nucleus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "vestibular nucleus biological structure of brain" EXACT [OBOL:automatic]
synonym: "vestibular nucleus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "vestibular nucleus brain biological structure" EXACT [OBOL:automatic]
synonym: "vestibular nucleus neuraxis segment" EXACT [OBOL:automatic]
synonym: "vestibular nucleus regional part of brain" EXACT [OBOL:automatic]
synonym: "vestibular nucleus segment of brain" EXACT [OBOL:automatic]
xref: FMA:71267
xref: NIF_GrossAnatomy:birnlex_1080
is_a: UBERON:0002678 ! regional part of medulla oblongata
relationship: part_of UBERON:0002673
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002673 ! vestibular nuclear complex
[Term]
id: UBERON:0002585
name: central tegmental tract of midbrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1081-FMA_72456
xref: FMA:72456
xref: NIF_GrossAnatomy:birnlex_1081
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002586
name: calcarine sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1086-FMA_83749
def: "The calcarine fissure is an anatomical landmark located at the caudal end of the medial surface of the brain. [WP,unvetted]." [Wikipedia:Calcarine_sulcus]
subset: uberon_slim
synonym: "calcarine fissure" EXACT [FMA:83749]
xref: FMA:83749
xref: ncithesaurus:Calcarine_Sulcus
xref: NIF_GrossAnatomy:birnlex_1086
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002587
name: nucleus subceruleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1088-FMA_72479
synonym: "subcaerulean nucleus" EXACT [FMA:72479]
xref: FMA:72479
xref: NIF_GrossAnatomy:birnlex_1088
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002588
name: decussation of superior cerebellar peduncle
alt_id: UBERON:0003032
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1089-FMA_72455
def: "The decussation of superior cerebellar peduncle is the portion of the superior cerebellar peduncle which crosses into the midbrain. [WP,unvetted]." [Wikipedia:Decussation_of_superior_cerebellar_peduncle]
subset: uberon_slim
synonym: "decussation of brachium conjunctivum" EXACT [FMA:72455]
synonym: "decussation of superior cerebellar peduncles" EXACT [FMA:72455]
synonym: "superior cerebellar peduncle decussation" EXACT [FMA:72455]
synonym: "Wernekink's decussation" EXACT [FMA:72455]
xref: FMA:72455
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Gray711.png/200px-Gray711.png
xref: NIF_GrossAnatomy:birnlex_1089
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002589
name: lateral corticospinal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1095-FMA_72635
def: "The lateral corticospinal tract (also called the crossed pyramidal tract or lateral cerebrospinal fasciculus) is the largest part of the corticospinal tract. It extends throughout the entire length of the medulla spinalis, and on transverse section appears as an oval area in front of the posterior column and medial to the posterior spinocerebellar tract. Its fibres arise from cells in the motor area of the cerebral hemisphere of the opposite side. They pass downward in company with those of the anterior corticospinal tract through the same side of the brain as that from which they originate, but they cross to the opposite side in the medulla oblongata and descend in the lateral funiculus of the medulla spinalis. The lateral corticospinal tract controls movement of contralateral limbs. Control of more central axial and girdle muscles comes from the anterior corticospinal tract. [WP,unvetted]." [Wikipedia:Lateral_corticospinal_tract]
subset: uberon_slim
synonym: "lateral pyramidal tract" EXACT [FMA:72635]
xref: FMA:72635
xref: NIF_GrossAnatomy:birnlex_1095
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002590
name: prepyriform area
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1097-FMA_62484
synonym: "lateral olfactory gyrus" EXACT [FMA:62484]
synonym: "piriform cortex (price)" EXACT []
synonym: "prepiriform cortex" EXACT [FMA:62484]
synonym: "prepyriform cortex" EXACT [FMA:62484]
xref: FMA:62484
xref: NIF_GrossAnatomy:birnlex_1097
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002591
name: oral part of spinal trigeminal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1100-FMA_235322
xref: FMA:235322
xref: NIF_GrossAnatomy:birnlex_1100
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve
[Term]
id: UBERON:0002592
name: juxtarestiform body
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1101-FMA_72613
def: "The juxtarestiform body is a subdivision of the inferior cerebellar peduncle, which comprises both the juxtarestiform and restiform bodies. [WP,unvetted]." [Wikipedia:Juxtarestiform_body]
subset: uberon_slim
xref: FMA:72613
xref: NIF_GrossAnatomy:birnlex_1101
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002593
name: orbital operculum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1102-FMA_74887
xref: FMA:74887
xref: NIF_GrossAnatomy:birnlex_1102
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002594
name: dentatothalamic tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1104-FMA_72462
def: "The dentatothalamic tract (or dentatorubrothalamic tract) is a tract which connects the dentate nucleus and the thalamus. [WP,unvetted]." [Wikipedia:Dentatothalamic_tract]
subset: uberon_slim
synonym: "dentatothalamic fibers" EXACT [FMA:72462]
xref: FMA:72462
xref: NIF_GrossAnatomy:birnlex_1104
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002595
name: orbital sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1112-FMA_83770
synonym: "orbital sulci" EXACT [FMA:83770]
xref: FMA:83770
xref: ncithesaurus:Orbital_Sulcus
xref: NIF_GrossAnatomy:birnlex_1112
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002596
name: ventral posterior nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1116-FMA_62187
def: "The ventral posterior nucleus is the somato-sensory relay nucleus in thalamus of the brain. [WP,unvetted]." [Wikipedia:Ventral_posterior_nucleus]
subset: uberon_slim
synonym: "ventral posterior thalamic nucleus" EXACT [FMA:62187]
synonym: "ventrobasal complex" EXACT [FMA:62187]
synonym: "ventrobasal nucleus" EXACT [FMA:62187]
xref: FMA:62187
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: NIF_GrossAnatomy:birnlex_1116
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002597
name: principal sensory nucleus of trigeminal nerve
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1120-FMA_54533
def: "The principal sensory nucleus (or chief sensory nucleus of V) is a group of second order neurons which have cell bodies in the dorsal Pons. It receives information about discriminative sensation and light touch of the face as well as conscious proprioception of the jaw via first order neurons of CN V. Most of the sensory information crosses the midline and travels to the contralateral ventral posteriomedial (VPM) of the thalamus via the Ventral Trigeminothalamic Tract, but information of the oral cavity travels to the ipsilateral Ventral Posteriomedial (VPM) of the thalamus via the Dorsal Trigeminothalamic Tract. [WP,unvetted]." [Wikipedia:Chief_sensory_nucleus]
comment: TODO - compare GO structure, children of TSN development
subset: uberon_slim
synonym: "chief sensory nucleus" EXACT [FMA:54533]
synonym: "main sensory nucleus" EXACT [FMA:54533]
synonym: "main sensory nucleus of cranial nerve v" EXACT []
synonym: "principal sensory nucleus" EXACT []
synonym: "principal sensory nucleus of trigeminal nerve" EXACT [FMA:54533]
synonym: "principal sensory trigeminal nucleus" EXACT [FMA:54533]
synonym: "principal trigeminal nucleus" EXACT [FMA:54533]
synonym: "superior trigeminal nucleus" EXACT [FMA:54533]
synonym: "superior trigeminal sensory nucleus" EXACT [FMA:54533]
synonym: "trigeminal nerve superior sensory nucleus" EXACT [FMA:54533]
synonym: "trigeminal V chief sensory nucleus" EXACT [MA:0002740]
synonym: "trigeminal V principal sensory nucleus" EXACT [MA:0002740]
xref: FMA:54533
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png
xref: MA:0002740
xref: NIF_GrossAnatomy:birnlex_1120
is_a: UBERON:0004132 ! trigeminal sensory nucleus
[Term]
id: UBERON:0002598
name: paracentral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1121-FMA_83762
xref: FMA:83762
xref: NIF_GrossAnatomy:birnlex_1121
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002599
name: medial olfactory gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1127-FMA_74509
xref: FMA:74509
xref: NIF_GrossAnatomy:birnlex_1127
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002600
name: limbic lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1128-FMA_72719
def: "The limbic lobe (also known as the Cingulate) is a portion of the brain associated with functions such as olfaction and emotion. It contains parts of other lobes, including the frontal, parietal, and temporal. Its main components are the fornicate gyrus, the hippocampus, and the amygdala It is related to the term limbic system, but unlike that term, 'limbic lobe' is a part of the Terminologia Anatomica, and there is less disagreement over what is included in the 'limbic lobe' than there is over what is included in the 'limbic system'. [WP,unvetted]." [Wikipedia:Limbic_lobe]
subset: uberon_slim
synonym: "fornicate gyrus" EXACT [FMA:72719]
synonym: "grande lobe limbique of broca" EXACT []
synonym: "limbic lobe (carpenter)" EXACT []
xref: FMA:72719
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Human_brain_inferior-medial_view_description.JPG/200px-Human_brain_inferior-medial_view_description.JPG
xref: NIF_GrossAnatomy:birnlex_1128
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0002601
name: fasciolar gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1129-FMA_61921
synonym: "retrosplenial gyrus of hippocampus" EXACT [FMA:61921]
xref: BTO:0002497
xref: FMA:61921
xref: NIF_GrossAnatomy:birnlex_1129
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002602
name: emboliform nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1135-FMA_72538
def: "The emboliform nucleus lies immediately to the medial side of the nucleus dentatus, and partly covering its hilus. It is one among the four pairs of cerebellar nuclei, which are from lateral to medial: the dentate, interposed (emboliform and globose), and fastigial nuclei. These nuclei can be seen using the Weigert method staining. [WP,unvetted]." [Wikipedia:Emboliform_nucleus]
subset: uberon_slim
synonym: "anterior interposed nucleus" EXACT [FMA:72538]
synonym: "anterior interpositus nucleus" EXACT [FMA:72538]
xref: FMA:72538
xref: NIF_GrossAnatomy:birnlex_1135
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002603
name: paraterminal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1138-FMA_61919
def: "The paraterminal gyrus (subcallosal gyrus, peduncle of the corpus callosum) is a narrow lamina on the medial surface of the hemisphere in front of the lamina terminalis, behind the parolfactory area, and below the rostrum of the corpus callosum. It is continuous around the genu of the corpus callosum with the supracallosal gyrus. [WP,unvetted]." [Wikipedia:Paraterminal_gyrus]
subset: uberon_slim
synonym: "precommissural hippocampus" EXACT [FMA:61919]
synonym: "subcallosal gyrus" EXACT [FMA:61919]
xref: FMA:61919
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png
xref: NIF_GrossAnatomy:birnlex_1138
is_a: UBERON:0002665 ! supracallosal gyrus
[Term]
id: UBERON:0002604
name: ventral nucleus of lateral lemniscus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1140-FMA_72484
def: "The lateral lemniscus is a tract of axons in the brainstem that carries information about sound from the cochlear nucleus to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. Three distinct, primarily inhibitory, cellular groups are located interspersed within these fibers, and are thus named the nuclei of the lateral lemniscus. [WP,unvetted]." [Wikipedia:Ventral_nucleus_of_the_lateral_lemniscus]
subset: uberon_slim
synonym: "anterior nucleus of lateral lemniscus" EXACT [FMA:72484]
synonym: "ventral nucleus of the lateral lemniscus" EXACT [FMA:72484]
xref: FMA:72484
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Lateral_lemniscus.PNG/200px-Lateral_lemniscus.PNG
xref: NIF_GrossAnatomy:birnlex_1140
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002605
name: precentral operculum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1141-FMA_74888
xref: FMA:74888
xref: NIF_GrossAnatomy:birnlex_1141
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002606
name: neuropil
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1142-FMA_261269
def: "A dense intricate feltwork of interwoven fine glial processes, fibrils, synaptic terminals, axons, and dendrites interspersed among the nerve cells of the central nervous system (MSH)[NIF]." [NIF_Subcellular:sao205380252, Wikipedia:Neuropil]
comment: check re portion of neural tissue.
subset: uberon_slim
xref: FBbt:00005139
xref: FMA:261269
xref: GAID:740
xref: ncithesaurus:Neuropil
xref: NIF_GrossAnatomy:birnlex_1142
xref: NIF_Subcellular:sao205380252
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002607
name: superior rostral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1143-FMA_83766
xref: FMA:83766
xref: NIF_GrossAnatomy:birnlex_1143
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002608
name: caudal part of ventral lateral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1144-FMA_62194
synonym: "dorsal part of ventral lateral posterior nucleus (jones)" EXACT []
synonym: "ventral lateral nucleus, caudal part" EXACT [FMA:62194]
synonym: "ventral lateral thalamic nucleus, caudal part" EXACT [FMA:62194]
xref: FMA:62194
xref: NIF_GrossAnatomy:birnlex_1144
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001925 ! ventral lateral nucleus
[Term]
id: UBERON:0002609
name: spinothalamic tract of midbrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1150-FMA_72463
xref: FMA:72463
xref: NIF_GrossAnatomy:birnlex_1150
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002610
name: cochlear nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1151-FMA_72240
def: "The cochlear nuclei consist of: (a) the dorsal cochlear nucleus, corresponding to the tuberculum acusticum on the dorso-lateral surface of the inferior peduncle; and (b) the ventral or accessory cochlear nucleus, placed between the two divisions of the nerve, on the ventral aspect of the inferior peduncle. [WP,unvetted]." [Wikipedia:Cochlear_nuclei]
subset: uberon_slim
synonym: "cochlear nuclei" EXACT [FMA:72240]
xref: FMA:72240
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png
xref: ncithesaurus:Cochlear_Nuclei
xref: NIF_GrossAnatomy:birnlex_1151
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002621 ! implied link automatically realized ! regional part of cochlear nuclear complex
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002611
name: node of ranvier
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1152-FMA_67368
def: "." [Wikipedia:Node_of_ranvier]
comment: in GO
subset: uberon_slim
synonym: "ranvier node" EXACT [FMA:67368]
synonym: "ranvier's node" EXACT [FMA:67368]
xref: FMA:67368
xref: GAID:748
xref: GO:0033268
xref: ncithesaurus:Node_of_Ranvier
xref: NIF_GrossAnatomy:birnlex_1152
is_obsolete: true
[Term]
id: UBERON:0002612
name: transverse orbital sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1155-FMA_83771
xref: FMA:83771
xref: NIF_GrossAnatomy:birnlex_1155
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002613
name: globose nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1158-FMA_72536
def: "The globose nucleus is one of the deep cerebellar nuclei. It is located medial to the emboliform nucleus and lateral to the fastigial nucleus. This nucleus contains primarily large and small multipolar neurons. The globose nucleus and emboliform nucleus are occasionally referred to collectively as the interposed nucleus. [WP,unvetted]." [Wikipedia:Globose_nucleus]
subset: uberon_slim
synonym: "posterior interposed nucleus" EXACT [FMA:72536]
synonym: "posterior interpositus nucleus" EXACT [FMA:72536]
xref: FMA:72536
xref: NIF_GrossAnatomy:birnlex_1158
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002614
name: medial part of ventral lateral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1159-FMA_62195
synonym: "ventral lateral nucleus, medial part" EXACT [FMA:62195]
synonym: "ventral medial nucleus" EXACT [FMA:62195]
xref: FMA:62195
xref: NIF_GrossAnatomy:birnlex_1159
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001925 ! ventral lateral nucleus
[Term]
id: UBERON:0002615
name: ventral tegmental decussation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1163-FMA_72452
synonym: "anterior tegmental decussation" EXACT [FMA:72452]
synonym: "decussation of forel" EXACT []
synonym: "ventral tegmental decussation of forel" EXACT []
xref: FMA:72452
xref: NIF_GrossAnatomy:birnlex_1163
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002616
name: regional part of brain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1167-FMA_55676
def: "An anatomical structure that is part of a brain [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "biological structure of brain" EXACT [OBOL:automatic]
synonym: "brain anatomical structure" EXACT [OBOL:automatic]
synonym: "brain biological structure" EXACT [OBOL:automatic]
synonym: "neuraxis segment" EXACT [FMA:55676]
synonym: "segment of brain" EXACT [NIF_GrossAnatomy:birnlex_1167]
xref: FMA:55676
xref: NIF_GrossAnatomy:birnlex_1167
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0000955
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002617
name: pars postrema of ventral lateral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1170-FMA_62196
synonym: "posterodorsal part of ventral lateral posterior nucleus (jones)" EXACT []
synonym: "ventral lateral nucleus (pars postrema)" EXACT [FMA:62196]
xref: FMA:62196
xref: NIF_GrossAnatomy:birnlex_1170
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001925 ! ventral lateral nucleus
[Term]
id: UBERON:0002618
name: trochlear nerve fibers
alt_id: UBERON:0002674
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1172-FMA_71116
synonym: "central part of trochlear nerve" EXACT [FMA:71116]
synonym: "trochlear nerve fibers" EXACT [FMA:71116]
synonym: "trochlear nerve root" EXACT [FMA:71116]
xref: FMA:71116
xref: NIF_GrossAnatomy:birnlex_1172
is_a: UBERON:0002211 ! segment of nerve
[Term]
id: UBERON:0002619
name: regional part of cerebral cortex
alt_id: UBERON:0003208
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1173-FMA_68603
def: "A regional part of brain that is part of a cerebral cortex [Obol]." [OBOL:automatic]
synonym: "cerebral cortex part" EXACT []
synonym: "segment of cerebral cortex" NARROW [NIF_GrossAnatomy:birnlex_1173]
xref: FMA:242193
xref: NIF_GrossAnatomy:birnlex_1173
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0000956
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0002620
name: tuber cinereum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1189-FMA_62327
def: "The tuber cinereum is a hollow eminence of gray matter situated between the mammilary bodies and the optic chiasm. The tuber cinereum is part of the hypothalamus. [WP,unvetted]." [Wikipedia:Tuber_cinereum]
subset: uberon_slim
xref: FMA:62327
xref: GAID:649
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray724.png/200px-Gray724.png
xref: ncithesaurus:Tuber_Cinereum
xref: NIF_GrossAnatomy:birnlex_1189
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002621
name: regional part of cochlear nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1195-FMA_83952
def: "A regional part of brain that is part of a cochlear nuclear complex [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of cochlear nuclear complex" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of cochlear nuclei" EXACT [OBOL:automatic]
synonym: "biological structure of brain of cochlear nuclear complex" EXACT [OBOL:automatic]
synonym: "biological structure of brain of cochlear nuclei" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of cochlear nuclear complex" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of cochlear nuclei" EXACT [OBOL:automatic]
synonym: "brain biological structure of cochlear nuclear complex" EXACT [OBOL:automatic]
synonym: "brain biological structure of cochlear nuclei" EXACT [OBOL:automatic]
synonym: "cochlear nuclear complex anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "cochlear nuclear complex biological structure of brain" EXACT [OBOL:automatic]
synonym: "cochlear nuclear complex brain anatomical structure" EXACT [OBOL:automatic]
synonym: "cochlear nuclear complex brain biological structure" EXACT [OBOL:automatic]
synonym: "cochlear nuclear complex neuraxis segment" EXACT [OBOL:automatic]
synonym: "cochlear nuclear complex regional part of brain" EXACT [OBOL:automatic]
synonym: "cochlear nuclear complex segment" EXACT [FMA:83952]
synonym: "cochlear nuclear complex segment of brain" EXACT [OBOL:automatic]
synonym: "cochlear nuclei anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "cochlear nuclei biological structure of brain" EXACT [OBOL:automatic]
synonym: "cochlear nuclei brain anatomical structure" EXACT [OBOL:automatic]
synonym: "cochlear nuclei brain biological structure" EXACT [OBOL:automatic]
synonym: "cochlear nuclei neuraxis segment" EXACT [OBOL:automatic]
synonym: "cochlear nuclei regional part of brain" EXACT [OBOL:automatic]
synonym: "cochlear nuclei segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of cochlear nuclear complex" EXACT [OBOL:automatic]
synonym: "neuraxis segment of cochlear nuclei" EXACT [OBOL:automatic]
synonym: "regional part of brain of cochlear nuclear complex" EXACT [OBOL:automatic]
synonym: "regional part of brain of cochlear nuclei" EXACT [OBOL:automatic]
synonym: "segment of brain of cochlear nuclear complex" EXACT [OBOL:automatic]
synonym: "segment of brain of cochlear nuclei" EXACT [OBOL:automatic]
synonym: "segment of cochlear nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1195]
xref: FMA:83952
xref: NIF_GrossAnatomy:birnlex_1195
is_a: UBERON:0002678 ! regional part of medulla oblongata
relationship: part_of UBERON:0002610
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002610 ! cochlear nuclear complex
[Term]
id: UBERON:0002622
name: preoptic periventricular nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1201-FMA_62324
synonym: "periventricular preoptic nucleus" EXACT [FMA:62324]
synonym: "preoptic periventricular hypothalamic nucleus" EXACT [FMA:62324]
xref: FMA:62324
xref: NIF_GrossAnatomy:birnlex_1201
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001928 ! preoptic area
[Term]
id: UBERON:0002623
name: cerebral peduncle
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1202-FMA_62394
def: "The cerebral peduncle, by most classifications, is everything in the mesencephalon except the tectum. The region includes the midbrain tegmentum, crus cerebri, substantia nigra and pretectum. By this definition, the cerebral peduncles are also known as the basis pedunculi, while the large ventral bundle of efferent fibers is referred to as the crus cerebri or the pes pedunculi There are numerous nerve tracts located within this section of the brainstem. Of note, in the cerebral peduncular loop fibers from motor areas of the brain project to the cerebral peduncle and then project to various thalamic nuclei. In as much as the peduncles are an anatomic landmark, for details regarding the function of this area interested readers are referred to the individual referenced articles. On a broad scale, though, this area contains many nerve tracts conveying motor information to and from the brain to the rest of the body. Important fibers running through the cerebral peduncles include the corticospinal tract and the corticobulbar tract, among others. [WP,unvetted]." [Wikipedia:Cerebral_peduncle]
subset: uberon_slim
synonym: "cerebral peduncle" EXACT [FMA:62394]
xref: EFO:0001987
xref: FMA:62394
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e9/Gray689.png/200px-Gray689.png
xref: ncithesaurus:Cerebral_Peduncle
xref: NIF_GrossAnatomy:birnlex_1202
is_a: UBERON:0002316 ! white matter of neuraxis
relationship: has_part UBERON:0001943 ! midbrain tegmentum
relationship: has_part UBERON:0002038 ! substantia nigra
[Term]
id: UBERON:0002624
name: orbital part of inferior frontal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1207-FMA_61982
synonym: "inferior frontal gyrus, orbital part" EXACT [FMA:61982]
xref: FMA:61982
xref: NIF_GrossAnatomy:birnlex_1207
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002625
name: median preoptic nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1208-FMA_62323
def: "." [Wikipedia:Median_preoptic_nucleus]
subset: uberon_slim
xref: FMA:62323
xref: NIF_GrossAnatomy:birnlex_1208
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001928 ! preoptic area
[Term]
id: UBERON:0002626
name: head of caudate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1212-FMA_61852
synonym: "caput (caudatus)" EXACT [FMA:61852]
synonym: "caudate nuclear head" EXACT [FMA:61852]
xref: FMA:61852
xref: NIF_GrossAnatomy:birnlex_1212
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001873 ! caudate nucleus
[Term]
id: UBERON:0002627
name: capsule of medial geniculate body
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1214-FMA_62049
synonym: "medial geniculate body capsule" EXACT [FMA:62049]
xref: FMA:62049
xref: NIF_GrossAnatomy:birnlex_1214
is_a: UBERON:0002316 ! white matter of neuraxis
relationship: part_of UBERON:0001927 ! medial geniculate body
[Term]
id: UBERON:0002628
name: tail of caudate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1215-FMA_61854
synonym: "caudate nuclear tail" EXACT [FMA:61854]
xref: FMA:61854
xref: NIF_GrossAnatomy:birnlex_1215
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001873 ! caudate nucleus
[Term]
id: UBERON:0002629
name: triangular part of inferior frontal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1216-FMA_61980
xref: FMA:61980
xref: NIF_GrossAnatomy:birnlex_1216
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002630
name: body of caudate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1217-FMA_61853
synonym: "caudate nuclear body" EXACT [FMA:61853]
synonym: "corpus (caudatus)" EXACT [FMA:61853]
xref: FMA:61853
xref: NIF_GrossAnatomy:birnlex_1217
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001873 ! caudate nucleus
[Term]
id: UBERON:0002631
name: cerebral crus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1218-FMA_72464
def: "The cerebral crus is the anterior portion of the cerebral peduncle which contains the motor tracts, the plural of which is cerebral crura. In some older texts, it is used as a synonym for the entire cerebral peduncle, not just the anterior portion of it. [WP,unvetted]." [Wikipedia:Cerebral_crus]
subset: uberon_slim
synonym: "cerebral peduncle (clinical definition)" EXACT [FMA:72464]
xref: FMA:72464
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png
xref: NIF_GrossAnatomy:birnlex_1218
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002632
name: medial part of medial mammillary nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1220-FMA_62345
synonym: "medial mammillary nucleus (carpenter)" EXACT []
synonym: "medial mammillary nucleus, medial part" EXACT [FMA:62345]
synonym: "medial mammillary nucleus, median part" EXACT [FMA:62345]
synonym: "medial subdivision of medial mammillary nucleus" EXACT [FMA:62345]
xref: FMA:62345
xref: NIF_GrossAnatomy:birnlex_1220
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002633
name: motor nucleus of trigeminal nerve
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1222-FMA_54562
def: "The trigeminal motor nucleus contains motor neurons that innervate muscles of the first branchial arch, namely the muscles of mastication, the tensor tympani, tensor veli palatini, mylohyoid, and anterior belly of the digastric." [Wikipedia:Trigeminal_motor_nucleus]
synonym: "motor nucleus of cranial nerve v" EXACT []
synonym: "motor nucleus of trigeminal nerve" EXACT [FMA:54562]
synonym: "motor nucleus V" EXACT [ZFA:0001365]
synonym: "trigeminal motor nucleus" EXACT [ZFA:0001365]
synonym: "trigeminal V motor nucleus" EXACT [MA:0001029]
xref: BTO:0001075
xref: FMA:54562
xref: HOG:0001355
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png
xref: MA:0001029
xref: NIF_GrossAnatomy:birnlex_1222
xref: ZFA:0001365
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002634
name: anterior nucleus of hypothalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1226-FMA_62319
def: "The Anterior hypothalamic nucleus is a nucleus of the hypothalamus. Its function is thermoregulation (the maintenance of body temperature between certain parameters) of the body. [WP,unvetted]." [Wikipedia:Anterior_hypothalamic_nucleus]
subset: uberon_slim
synonym: "anterior hypothalamic area" EXACT [FMA:62319]
synonym: "anterior hypothalamic nucleus" EXACT [FMA:62319]
synonym: "fundamental gray substance" EXACT [FMA:62319]
synonym: "parvocellular nucleus of hypothalamus" EXACT [FMA:62319]
xref: BTO:0002450
xref: FMA:62319
xref: GAID:642
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/HypothalamicNuclei.PNG/200px-HypothalamicNuclei.PNG
xref: NIF_GrossAnatomy:birnlex_1226
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001928 ! preoptic area
[Term]
id: UBERON:0002635
name: regional part of midbrain tegmentum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1227-FMA_62399
synonym: "midbrain tegmentum segment" EXACT [FMA:62399]
synonym: "segment of midbrain tegmentum" EXACT [NIF_GrossAnatomy:birnlex_1227]
xref: FMA:62399
xref: NIF_GrossAnatomy:birnlex_1227
is_a: UBERON:0002950 ! regional part of midbrain
[Term]
id: UBERON:0002636
name: lateral pulvinar nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1228-FMA_62181
synonym: "lateral pulvinar nucleus of thalamus" EXACT [FMA:62181]
xref: FMA:62181
xref: NIF_GrossAnatomy:birnlex_1228
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002637
name: ventral anterior nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1232-FMA_62184
def: "The ventral anterior nucleus is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_anterior_nucleus]
subset: uberon_slim
synonym: "ventral anterior nucleus of thalamus" EXACT [FMA:62184]
synonym: "ventral anterior thalamic nucleus" EXACT [FMA:62184]
xref: BTO:0002468
xref: FMA:62184
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: NIF_GrossAnatomy:birnlex_1232
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002638
name: medial pulvinar nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1233-FMA_62182
xref: FMA:62182
xref: NIF_GrossAnatomy:birnlex_1233
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002639
name: midbrain reticular formation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1235-FMA_62406
def: "A reticular formation that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "reticular formation of midbrain" EXACT [FMA:62406]
synonym: "tegmental reticular formation" EXACT [FMA:62406]
xref: FMA:62406
xref: NIF_GrossAnatomy:birnlex_1235
is_a: UBERON:0002275 ! reticular formation
relationship: part_of UBERON:0001891
intersection_of: UBERON:0002275 ! reticular formation
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: has_part UBERON:0002142 ! pedunculopontine tegmental nucleus
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002640
name: cuneocerebellar tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1238-FMA_72637
def: "The posterior external arcuate fibers (dorsal external arcuate fibers) take origin in the gracile and cuneate nuclei; they pass to the inferior peduncle of the same side. It is uncertain whether fibers are continued directly from the gracile and cuneate fasciculi into the inferior peduncle. The term 'cuneocerebellar tract' is sometimes used to collectively refer to the posterior external arcuate fibers. [WP,unvetted]." [Wikipedia:Cuneocerebellar_tract]
subset: uberon_slim
xref: FMA:72637
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/98/Gray699.png/200px-Gray699.png
xref: NIF_GrossAnatomy:birnlex_1238
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002641
name: oral pulvinar nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1239-FMA_62180
synonym: "anterior pulvinar nucleus" EXACT [FMA:62180]
synonym: "oral nuclear group of pulvinar" EXACT [FMA:62180]
synonym: "oral part of pulvinar" EXACT [FMA:62180]
synonym: "oral portion of pulvinar" EXACT [FMA:62180]
xref: FMA:62180
xref: NIF_GrossAnatomy:birnlex_1239
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002642
name: cuneate fasciculus of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1242-FMA_72623
comment: TODO - change definition to be the *whole* of the CF in the MO
xref: FMA:72623
xref: NIF_GrossAnatomy:birnlex_1242
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005832 ! implied link automatically realized ! cuneate fasciculus
relationship: part_of UBERON:0001896
intersection_of: UBERON:0005832 ! cuneate fasciculus
intersection_of: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002643
name: decussation of medial lemniscus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1245-FMA_72622
def: "The sensory decussation or decussation of the lemniscus is a decussation or cross over of axons from the gracile nucleus and cuneate nucleus. The fibres of this decussation are called the internal arcuate fibres and are found at the superior aspect of the closed medulla superior to the motor decussation. It is part of the second neuron in the Posterior column-medial lemniscus pathway. [WP,unvetted]." [Wikipedia:Sensory_decussation]
subset: uberon_slim
synonym: "decussation of lemnisci" EXACT [FMA:72622]
synonym: "decussation of lemniscus" EXACT [FMA:72622]
synonym: "decussation of medial lemnisci" EXACT [FMA:72622]
synonym: "medial lemniscus decussation" EXACT [FMA:72622]
synonym: "medullary sensory decussation" EXACT [FMA:72622]
synonym: "sensory decussation" EXACT [FMA:72622]
xref: FMA:72622
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray759.png/200px-Gray759.png
xref: NIF_GrossAnatomy:birnlex_1245
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002644
name: intermediate orbital gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1247-FMA_80183
xref: FMA:80183
xref: NIF_GrossAnatomy:birnlex_1247
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002645
name: densocellular part of medial dorsal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1255-FMA_62163
xref: FMA:62163
xref: NIF_GrossAnatomy:birnlex_1255
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002646
name: dorsal longitudinal fasciculus of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1257-FMA_72617
def: "A dorsal longitudinal fasciculus that is part of a medulla [Obol]." [OBOL:automatic]
synonym: "bundle of Schutz of medulla" EXACT [OBOL:automatic]
synonym: "fasciculus of Schutz of medulla" EXACT [OBOL:automatic]
synonym: "medulla bundle of Schutz" EXACT [OBOL:automatic]
synonym: "medulla dorsal longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "medulla fasciculus of Schutz" EXACT [OBOL:automatic]
synonym: "medulla posterior longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "posterior longitudinal fasciculus of medulla" EXACT [OBOL:automatic]
xref: FMA:72617
xref: NIF_GrossAnatomy:birnlex_1257
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
is_a: UBERON:0005838 ! implied link automatically realized ! fasciculus of brain
relationship: part_of UBERON:0000958
intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus
intersection_of: part_of UBERON:0000958 ! medulla
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002647
name: magnocellular part of medial dorsal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1262-FMA_62161
synonym: "dorsomedial thalamic nucleus, magnocellular part" EXACT [FMA:62161]
synonym: "magnocellular mediodorsal nucleus" EXACT [FMA:62161]
synonym: "magnocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62161]
synonym: "magnocellular part of dorsomedial nucleus" EXACT [FMA:62161]
xref: FMA:62161
xref: NIF_GrossAnatomy:birnlex_1262
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002648
name: anterior median eminence
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1264-FMA_74870
xref: FMA:74870
xref: NIF_GrossAnatomy:birnlex_1264
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002649
name: dorsolateral fasciculus of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1267-FMA_72616
def: "." [Wikipedia:Lissauer's_tract]
subset: uberon_slim
synonym: "dorsolateral tract" EXACT [FMA:72616]
synonym: "lissauer's tract" EXACT [FMA:72616]
synonym: "posterolateral fasciculus" EXACT [FMA:72616]
synonym: "posterolateral tract" EXACT [FMA:72616]
synonym: "tract of lissauer" EXACT []
synonym: "zone of lissauer" EXACT []
xref: FMA:72616
xref: ncithesaurus:Tract_of_Lissauer
xref: NIF_GrossAnatomy:birnlex_1267
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002650
name: paralaminar part of medial dorsal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1276-FMA_62160
synonym: "dorsomedial thalamic nucleus, paralaminar part" EXACT [FMA:62160]
synonym: "paralaminar part of dorsomedial nucleus" EXACT [FMA:62160]
synonym: "paralaminar part of medial dorsal nucleus of thalamus" EXACT [FMA:62160]
synonym: "pars paralaminaris of medial dorsal nucleus of thalamus" EXACT [FMA:62160]
synonym: "ventral mediodorsal nucleus" EXACT [FMA:62160]
xref: FMA:62160
xref: NIF_GrossAnatomy:birnlex_1276
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002651
name: anterior horn of lateral ventricle
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1279-FMA_74520
def: "The anterior cornu (frontal horn, anterior horn; precornu) of the lateral ventricle passes forward and lateralward, with a slight inclination downward, from the interventricular foramen into the frontal lobe, curving around the anterior end of the caudate nucleus. Its floor is formed by the upper surface of the reflected portion of the corpus callosum, the rostrum. It is bounded medially by the anterior portion of the septum pellucidum, and laterally by the head of the caudate nucleus. Its apex reaches the posterior surface of the genu of the corpus callosum. [WP,unvetted]." [Wikipedia:Anterior_horn_of_lateral_ventricle]
subset: uberon_slim
synonym: "anterior horn of lateral ventricle" EXACT [FMA:74520]
xref: FMA:74520
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray735.png/200px-Gray735.png
xref: NIF_GrossAnatomy:birnlex_1279
is_a: UBERON:0004086 ! brain ventricle
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0002652
name: posterior median eminence
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1280-FMA_74875
xref: FMA:74875
xref: NIF_GrossAnatomy:birnlex_1280
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0002653
name: gracile fasciculus of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1282-FMA_72624
synonym: "column of goll" EXACT []
synonym: "fasciculus of goll" EXACT []
synonym: "goll's tract" EXACT [FMA:72624]
synonym: "gracile fascicle of medulla" EXACT [FMA:72624]
synonym: "medulla segment of fasciculus gracilis" EXACT [FMA:72624]
synonym: "medulla segment of gracile fasciculus" EXACT [FMA:72624]
synonym: "tract of gall" EXACT []
xref: FMA:72624
xref: NIF_GrossAnatomy:birnlex_1282
is_a: UBERON:0005821 ! implied link automatically realized ! gracile fasciculus
relationship: part_of UBERON:0001896
intersection_of: UBERON:0005821 ! gracile fasciculus
intersection_of: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002654
name: parvicellular part of medial dorsal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1283-FMA_62162
synonym: "dorsomedial thalamic nucleus, parvicellular part" EXACT [FMA:62162]
synonym: "lateral mediodorsal nucleus" EXACT [FMA:62162]
synonym: "lateral nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162]
synonym: "parvicellular part of dorsomedial nucleus" EXACT [FMA:62162]
synonym: "parvocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162]
synonym: "principal division of ventral anterior nucleus of thalamus" EXACT [FMA:62162]
xref: FMA:62162
xref: NIF_GrossAnatomy:birnlex_1283
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002655
name: body of lateral ventricle
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1287-FMA_83703
def: "The body of lateral ventricle (cella) extends from the interventricular foramen to the splenium of the corpus callosum. It is an irregularly curved cavity, triangular on transverse section, with a roof, a floor, and a medial wall. The roof is formed by the under surface of the corpus callosum; the floor by the following parts, enumerated in their order of position, from before backward: the caudate nucleus of the corpus striatum, the stria terminalis and the terminal vein, the lateral portion of the upper surface of the thalamus, the choroid plexus, and the lateral part of the fornix; the medial wall is the posterior part of the septum pellucidum, which separates it from the opposite ventricle. [WP,unvetted]." [Wikipedia:Body_of_lateral_ventricle]
subset: uberon_slim
synonym: "central part of lateral ventricle" EXACT [FMA:83703]
synonym: "lateral ventricular body" EXACT [FMA:83703]
xref: FMA:83703
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray735.png/200px-Gray735.png
xref: NIF_GrossAnatomy:birnlex_1287
is_a: UBERON:0004086 ! brain ventricle
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0002656
name: periamygdaloid area
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1291-FMA_62485
synonym: "para-amygdaloid cortex" EXACT [FMA:62485]
synonym: "periamygdaloid cortex" EXACT [FMA:62485]
synonym: "periamygdaloid region" EXACT [FMA:62485]
synonym: "semilunar gyrus" EXACT [FMA:62485]
synonym: "ventral cortical nucleus of amygdala" EXACT [FMA:62485]
xref: FMA:62485
xref: NIF_GrossAnatomy:birnlex_1291
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002657
name: posterior parahippocampal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1295-FMA_67966
synonym: "parahippocampal gyrus (amaral)" EXACT []
xref: FMA:67966
xref: NIF_GrossAnatomy:birnlex_1295
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002658
name: medial lemniscus of midbrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1296-FMA_72461
def: "A medial lemniscus that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "midbrain medial lemniscus" EXACT [OBOL:automatic]
xref: FMA:72461
xref: NIF_GrossAnatomy:birnlex_1296
is_a: UBERON:0003002 ! medial lemniscus
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001891
intersection_of: UBERON:0003002 ! medial lemniscus
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002659
name: superior medullary velum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1300-FMA_74508
def: "The superior medullary velum (anterior medullary velum, valve of Vieussens) is a thin, transparent of white substance, which stretches between the superior cerebellar peduncles; on the dorsal surface of its lower half the folia and lingula are prolonged. It forms, together with the superior cerebellar peduncle, the roof of the upper part of the fourth ventricle; it is narrow above, where it passes beneath the inferior colliculi, and broader below, where it is continuous with the white substance of the superior vermis. A slightly elevated ridge, the fraenulum veli, descends upon its upper part from between the inferior colliculi, and on either side of this the trochlear nerve emerges. Blood is supplied by branches from the superior cerebellar artery. [WP,unvetted]." [Wikipedia:Superior_medullary_velum]
subset: uberon_slim
synonym: "anterior medullary velum" EXACT [FMA:74508]
xref: FMA:74508
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Gray701.png/200px-Gray701.png
xref: NIF_GrossAnatomy:birnlex_1300
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002660
name: medial longitudinal fasciculus of midbrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1302-FMA_72454
def: "A medial longitudinal fasciculus that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "midbrain medial longitudinal fasciculus" EXACT [OBOL:automatic]
xref: FMA:72454
xref: NIF_GrossAnatomy:birnlex_1302
is_a: UBERON:0002309 ! medial longitudinal fasciculus
relationship: part_of UBERON:0001891
intersection_of: UBERON:0002309 ! medial longitudinal fasciculus
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002661
name: superior frontal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1303-FMA_61857
def: "The superior frontal gyrus makes up about one-third of the frontal lobe of the human brain. It is bounded laterally by the superior frontal sulcus. The superior frontal gyrus, like the inferior frontal gyrus and the middle frontal gyrus, is more of a region than a true gyrus. [WP,unvetted]." [Wikipedia:Superior_frontal_gyrus]
subset: uberon_slim
synonym: "marginal gyrus" EXACT [FMA:61857]
synonym: "superior frontal convolution" EXACT [FMA:61857]
xref: EFO:0001991
xref: FMA:61857
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/50/Superior_frontal_gyrus.png/200px-Superior_frontal_gyrus.png
xref: ncithesaurus:Superior_Frontal_Convolution
xref: NIF_GrossAnatomy:birnlex_1303
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001870 ! frontal cortex
[Term]
id: UBERON:0002662
name: medial pes lemniscus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1310-FMA_72460
synonym: "superficial pes lemniscus" EXACT [FMA:72460]
xref: FMA:72460
xref: NIF_GrossAnatomy:birnlex_1310
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002663
name: septal nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1313-FMA_61845
def: "The septal nuclei are structures in the middle anteroventral cerebrum that are composed of medium-size neurons grouped into medial, lateral, and posterior groups. The septal nuclei receive reciprocal connections from the olfactory bulb, hippocampus, amygdala, hypothalamus, midbrain, habenula, cingulate gyrus, and thalamus. The septal nuclei play a role in reward and reinforcement along with the nucleus accumbens. In the 1950s, Olds & Milner showed that rats with electrodes implanted in this area will self-stimulate repeatedly in order to experience a euphoric feeling (i.e. press a bar to receive electrical current that will stimulate the neurons). [WP,unvetted]." [Wikipedia:Septal_nuclei]
comment: TODO - nucleus vs nuclear complex
subset: uberon_slim
synonym: "parolfactory nuclei" EXACT [FMA:61845]
synonym: "septal nuclei" EXACT [FMA:61845]
synonym: "septal nucleus" EXACT [MA:0002978]
xref: FMA:61845
xref: GAID:637
xref: MA:0002978
xref: NIF_GrossAnatomy:birnlex_1313
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002664
name: lateral part of medial mammillary nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1314-FMA_62346
synonym: "intercalated mammillary nucleus" EXACT [FMA:62346]
synonym: "intermediate mammillary nucleus" EXACT [FMA:62346]
synonym: "lateral mammillary nucleus (gagel)" EXACT []
synonym: "lateral subdivision of medial mammillary nucleus" EXACT [FMA:62346]
synonym: "medial mammillary nucleus, lateral part" EXACT [FMA:62346]
xref: FMA:62346
xref: NIF_GrossAnatomy:birnlex_1314
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002665
name: supracallosal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1316-FMA_61920
def: "The supracallosal gyrus (indusium griseum; gyrus epicallosus) consists of a thin layer of grey matter in contact with the dorsal surface of the corpus callosum and continuous laterally with the grey matter of the cingulate gyrus. It contains two longitudinally directed strands of fibers termed respectively the medial and lateral longitudinal striae. The supracallosal gyrus is prolonged around the splenium of the corpus callosum as a delicate lamina, the fasciola cinerea, which is continuous below with the fascia dentata hippocampi. [WP,unvetted]." [Wikipedia:Supracallosal_gyrus]
subset: uberon_slim
synonym: "supracommissural hippocampal rudiment" EXACT [FMA:61920]
synonym: "supracommissural hippocampus" EXACT [FMA:61920]
xref: FMA:61920
xref: NIF_GrossAnatomy:birnlex_1316
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002666
name: mesencephalic tract of trigeminal nerve
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1318-FMA_72489
synonym: "mesencephalic root of v" EXACT []
synonym: "mesencephalic trigeminal tract" EXACT [FMA:72489]
xref: FMA:72489
xref: NIF_GrossAnatomy:birnlex_1318
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002667
name: lateral septal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1321-FMA_61878
synonym: "lateral parolfactory nucleus" EXACT [FMA:61878]
xref: FMA:61878
xref: NIF_GrossAnatomy:birnlex_1321
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002668
name: oculomotor nerve fibers
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1323-FMA_72457
synonym: "oculomotor nerve fibers" EXACT [FMA:72457]
synonym: "root of oculomotor nerve" EXACT [FMA:72457]
xref: FMA:72457
xref: NIF_GrossAnatomy:birnlex_1323
is_a: UBERON:0002211 ! segment of nerve
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002669
name: anterior horizontal limb of lateral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1327-FMA_83760
synonym: "anterior branch of lateral sulcus" EXACT [FMA:83760]
synonym: "anterior horizontal limb of lateral fissure" EXACT [FMA:83760]
synonym: "anterior horizontal ramus of lateral fissure" EXACT [FMA:83760]
synonym: "anterior ramus of lateral cerebral sulcus" EXACT [FMA:83760]
synonym: "horizontal limb of lateral fissure" EXACT [FMA:83760]
synonym: "horizontal ramus of sylvian fissure" EXACT []
xref: FMA:83760
xref: NIF_GrossAnatomy:birnlex_1327
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002670
name: anterior ascending limb of lateral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1330-FMA_83759
synonym: "anterior ascending limb of lateral fissure" EXACT [FMA:83759]
synonym: "anterior ascending ramus of lateral sulcus" EXACT [FMA:83759]
synonym: "ascending branch of lateral sulcus" EXACT [FMA:83759]
synonym: "ascending ramus of lateral cerebral sulcus" EXACT [FMA:83759]
synonym: "ascending ramus of sylvian fissure" EXACT []
synonym: "middle ramus of lateral fissure" EXACT [FMA:83759]
synonym: "superior branch of lateral fissure" EXACT [FMA:83759]
xref: FMA:83759
xref: NIF_GrossAnatomy:birnlex_1330
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002671
name: pallidotegmental fasciculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1331-FMA_72458
synonym: "pallidotegmental tract" EXACT [FMA:72458]
xref: FMA:72458
xref: NIF_GrossAnatomy:birnlex_1331
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002672
name: anterior subcentral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1332-FMA_83765
xref: FMA:83765
xref: NIF_GrossAnatomy:birnlex_1332
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002673
name: vestibular nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1337-FMA_72239
def: "The vestibular nuclei are the cranial nuclei for the vestibular nerve. [WP,unvetted]." [Wikipedia:Vestibular_nuclei]
subset: uberon_slim
synonym: "vestibular nuclei" EXACT [FMA:72239]
synonym: "vestibular nuclei in medulla oblongata" EXACT [FMA:72239]
synonym: "vestibular nucleus" EXACT [GO:0021750]
xref: FMA:72239
xref: GAID:602
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray691.png/200px-Gray691.png
xref: ncithesaurus:Vestibular_Nucleus
xref: NIF_GrossAnatomy:birnlex_1337
is_a: UBERON:0000125 ! neural nucleus
is_a: UBERON:0002308 ! implied link automatically realized ! nucleus of brain
is_a: UBERON:0002584 ! implied link automatically realized ! regional part of vestibular nuclear complex
relationship: part_of UBERON:0000988 ! pons
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002675
name: diagonal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1344-FMA_83758
xref: FMA:83758
xref: NIF_GrossAnatomy:birnlex_1344
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002676
name: ventral supraoptic decussation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1347-FMA_62052
def: "The ventral supraoptic decussation is the crossover point for signals from the left and right eye, en route respectively to the right and left sides of the visual cortex. Occupying the posterior part of the commissure of the optic chiasma is a strand of fibers, the Ventral supraoptic decussation (commissure of Gudden, Gudden's inferior commissure), which is not derived from the optic nerves; it forms a connecting link between the medial geniculate bodies. [WP,unvetted]." [Wikipedia:Ventral_supraoptic_decussation]
subset: uberon_slim
synonym: "commissure of gudden" EXACT []
synonym: "gudden commissure" EXACT [FMA:62052]
synonym: "gudden's commissure" EXACT [FMA:62052]
synonym: "supraoptic commissures, ventral" EXACT [FMA:62052]
synonym: "ventral supra-optic commissure" EXACT [FMA:62052]
synonym: "ventral supraoptic commissure (of meynert)" EXACT []
synonym: "ventral supraoptic decussation of gudden" EXACT []
synonym: "von Gudden's commissure" EXACT [FMA:62052]
xref: FMA:62052
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c0/Gray722.png/200px-Gray722.png
xref: NIF_GrossAnatomy:birnlex_1347
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002677
name: regional part of medullary raphe nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1349-FMA_83951
def: "A regional part of brain that is part of a medullary raphe nuclear complex [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of medullary raphe nuclear complex" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of raphe nuclei of medulla" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of raphe of medulla oblongata" EXACT [OBOL:automatic]
synonym: "biological structure of brain of medullary raphe nuclear complex" EXACT [OBOL:automatic]
synonym: "biological structure of brain of raphe nuclei of medulla" EXACT [OBOL:automatic]
synonym: "biological structure of brain of raphe of medulla oblongata" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of medullary raphe nuclear complex" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of raphe nuclei of medulla" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of raphe of medulla oblongata" EXACT [OBOL:automatic]
synonym: "brain biological structure of medullary raphe nuclear complex" EXACT [OBOL:automatic]
synonym: "brain biological structure of raphe nuclei of medulla" EXACT [OBOL:automatic]
synonym: "brain biological structure of raphe of medulla oblongata" EXACT [OBOL:automatic]
synonym: "medullary raphe nuclear complex anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "medullary raphe nuclear complex biological structure of brain" EXACT [OBOL:automatic]
synonym: "medullary raphe nuclear complex brain anatomical structure" EXACT [OBOL:automatic]
synonym: "medullary raphe nuclear complex brain biological structure" EXACT [OBOL:automatic]
synonym: "medullary raphe nuclear complex neuraxis segment" EXACT [OBOL:automatic]
synonym: "medullary raphe nuclear complex regional part of brain" EXACT [OBOL:automatic]
synonym: "medullary raphe nuclear complex segment" EXACT [FMA:83951]
synonym: "medullary raphe nuclear complex segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of medullary raphe nuclear complex" EXACT [OBOL:automatic]
synonym: "neuraxis segment of raphe nuclei of medulla" EXACT [OBOL:automatic]
synonym: "neuraxis segment of raphe of medulla oblongata" EXACT [OBOL:automatic]
synonym: "raphe nuclei of medulla anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "raphe nuclei of medulla biological structure of brain" EXACT [OBOL:automatic]
synonym: "raphe nuclei of medulla brain anatomical structure" EXACT [OBOL:automatic]
synonym: "raphe nuclei of medulla brain biological structure" EXACT [OBOL:automatic]
synonym: "raphe nuclei of medulla neuraxis segment" EXACT [OBOL:automatic]
synonym: "raphe nuclei of medulla regional part of brain" EXACT [OBOL:automatic]
synonym: "raphe nuclei of medulla segment of brain" EXACT [OBOL:automatic]
synonym: "raphe of medulla oblongata anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "raphe of medulla oblongata biological structure of brain" EXACT [OBOL:automatic]
synonym: "raphe of medulla oblongata brain anatomical structure" EXACT [OBOL:automatic]
synonym: "raphe of medulla oblongata brain biological structure" EXACT [OBOL:automatic]
synonym: "raphe of medulla oblongata neuraxis segment" EXACT [OBOL:automatic]
synonym: "raphe of medulla oblongata regional part of brain" EXACT [OBOL:automatic]
synonym: "raphe of medulla oblongata segment of brain" EXACT [OBOL:automatic]
synonym: "regional part of brain of medullary raphe nuclear complex" EXACT [OBOL:automatic]
synonym: "regional part of brain of raphe nuclei of medulla" EXACT [OBOL:automatic]
synonym: "regional part of brain of raphe of medulla oblongata" EXACT [OBOL:automatic]
synonym: "segment of brain of medullary raphe nuclear complex" EXACT [OBOL:automatic]
synonym: "segment of brain of raphe nuclei of medulla" EXACT [OBOL:automatic]
synonym: "segment of brain of raphe of medulla oblongata" EXACT [OBOL:automatic]
synonym: "segment of medullary raphe nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1349]
xref: FMA:83951
xref: NIF_GrossAnatomy:birnlex_1349
is_a: UBERON:0002678 ! regional part of medulla oblongata
relationship: part_of UBERON:0002692
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002692 ! medullary raphe nuclear complex
[Term]
id: UBERON:0002678
name: regional part of medulla oblongata
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1355-FMA_71011
def: "A regional part of brain that is part of a medulla oblongata [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of bulb" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of medulla oblongata" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of metepencephalon" EXACT [OBOL:automatic]
synonym: "biological structure of brain of bulb" EXACT [OBOL:automatic]
synonym: "biological structure of brain of medulla oblongata" EXACT [OBOL:automatic]
synonym: "biological structure of brain of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "biological structure of brain of metepencephalon" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of bulb" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of medulla oblongata" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of metepencephalon" EXACT [OBOL:automatic]
synonym: "brain biological structure of bulb" EXACT [OBOL:automatic]
synonym: "brain biological structure of medulla oblongata" EXACT [OBOL:automatic]
synonym: "brain biological structure of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "brain biological structure of metepencephalon" EXACT [OBOL:automatic]
synonym: "bulb anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "bulb biological structure of brain" EXACT [OBOL:automatic]
synonym: "bulb brain anatomical structure" EXACT [OBOL:automatic]
synonym: "bulb brain biological structure" EXACT [OBOL:automatic]
synonym: "bulb neuraxis segment" EXACT [OBOL:automatic]
synonym: "bulb regional part of brain" EXACT [OBOL:automatic]
synonym: "bulb segment of brain" EXACT [OBOL:automatic]
synonym: "medulla oblongata anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "medulla oblongata biological structure of brain" EXACT [OBOL:automatic]
synonym: "medulla oblongata brain anatomical structure" EXACT [OBOL:automatic]
synonym: "medulla oblongata brain biological structure" EXACT [OBOL:automatic]
synonym: "medulla oblongata neuraxis segment" EXACT [OBOL:automatic]
synonym: "medulla oblongata regional part of brain" EXACT [OBOL:automatic]
synonym: "medulla oblongata segment of brain" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata biological structure of brain" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata brain anatomical structure" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata brain biological structure" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata neuraxis segment" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata regional part of brain" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata segment of brain" EXACT [OBOL:automatic]
synonym: "medullary oblongata segment" EXACT [FMA:71011]
synonym: "metepencephalon anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "metepencephalon biological structure of brain" EXACT [OBOL:automatic]
synonym: "metepencephalon brain anatomical structure" EXACT [OBOL:automatic]
synonym: "metepencephalon brain biological structure" EXACT [OBOL:automatic]
synonym: "metepencephalon neuraxis segment" EXACT [OBOL:automatic]
synonym: "metepencephalon regional part of brain" EXACT [OBOL:automatic]
synonym: "metepencephalon segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of bulb" EXACT [OBOL:automatic]
synonym: "neuraxis segment of medulla oblongata" EXACT [OBOL:automatic]
synonym: "neuraxis segment of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "neuraxis segment of metepencephalon" EXACT [OBOL:automatic]
synonym: "regional part of brain of bulb" EXACT [OBOL:automatic]
synonym: "regional part of brain of medulla oblongata" EXACT [OBOL:automatic]
synonym: "regional part of brain of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "regional part of brain of metepencephalon" EXACT [OBOL:automatic]
synonym: "segment of brain of bulb" EXACT [OBOL:automatic]
synonym: "segment of brain of medulla oblongata" EXACT [OBOL:automatic]
synonym: "segment of brain of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "segment of brain of metepencephalon" EXACT [OBOL:automatic]
synonym: "segment of medulla oblongata" EXACT [NIF_GrossAnatomy:birnlex_1355]
xref: FMA:71011
xref: NIF_GrossAnatomy:birnlex_1355
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0001896
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002679
name: anterodorsal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1358-FMA_62141
synonym: "anterodorsal nucleus of thalamus" EXACT [FMA:62141]
synonym: "anterodorsal thalamic nucleus" EXACT [FMA:62141]
xref: FMA:62141
xref: NIF_GrossAnatomy:birnlex_1358
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002680
name: regional part of metencephalon
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1361-FMA_67942
def: "A regional part of brain that is part of a metencephalon [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of epencephalon-2" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of metencephalon" EXACT [OBOL:automatic]
synonym: "biological structure of brain of epencephalon-2" EXACT [OBOL:automatic]
synonym: "biological structure of brain of metencephalon" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of epencephalon-2" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of metencephalon" EXACT [OBOL:automatic]
synonym: "brain biological structure of epencephalon-2" EXACT [OBOL:automatic]
synonym: "brain biological structure of metencephalon" EXACT [OBOL:automatic]
synonym: "epencephalon-2 anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "epencephalon-2 biological structure of brain" EXACT [OBOL:automatic]
synonym: "epencephalon-2 brain anatomical structure" EXACT [OBOL:automatic]
synonym: "epencephalon-2 brain biological structure" EXACT [OBOL:automatic]
synonym: "epencephalon-2 neuraxis segment" EXACT [OBOL:automatic]
synonym: "epencephalon-2 regional part of brain" EXACT [OBOL:automatic]
synonym: "epencephalon-2 segment of brain" EXACT [OBOL:automatic]
synonym: "metencephalon anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "metencephalon biological structure of brain" EXACT [OBOL:automatic]
synonym: "metencephalon brain anatomical structure" EXACT [OBOL:automatic]
synonym: "metencephalon brain biological structure" EXACT [OBOL:automatic]
synonym: "metencephalon neuraxis segment" EXACT [OBOL:automatic]
synonym: "metencephalon regional part of brain" EXACT [OBOL:automatic]
synonym: "metencephalon segment of brain" EXACT [OBOL:automatic]
synonym: "metencephalon subdivision" EXACT [FMA:67942]
synonym: "neuraxis segment of epencephalon-2" EXACT [OBOL:automatic]
synonym: "neuraxis segment of metencephalon" EXACT [OBOL:automatic]
synonym: "regional part of brain of epencephalon-2" EXACT [OBOL:automatic]
synonym: "regional part of brain of metencephalon" EXACT [OBOL:automatic]
synonym: "segment of brain of epencephalon-2" EXACT [OBOL:automatic]
synonym: "segment of brain of metencephalon" EXACT [OBOL:automatic]
synonym: "segment of metencephalon" EXACT [NIF_GrossAnatomy:birnlex_1361]
xref: FMA:67942
xref: NIF_GrossAnatomy:birnlex_1361
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0001895
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001895 ! metencephalon
[Term]
id: UBERON:0002681
name: anteromedial nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1365-FMA_62142
synonym: "anteromedial nucleus of thalamus" EXACT [FMA:62142]
synonym: "anteromedial thalamic nucleus" EXACT [FMA:62142]
xref: FMA:62142
xref: NIF_GrossAnatomy:birnlex_1365
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002682
name: abducens nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1366-FMA_54504
def: "The abducens nucleus is the originating nucleus from which the abducens nerve emerges - a cranial nerve nucleus. This nucleus is located beneath the fourth ventricle in the caudal portion of the pons, medial to the sulcus limitans. The abducens nucleus along with the internal genu of the facial nerve make up the facial colliculus, a hump at the caudal end of the medial eminence on the dorsal aspect of the pons. [WP,unvetted]." [Wikipedia:Abducens_nucleus]
comment: check ZFA/pons
subset: uberon_slim
synonym: "abducens motor nucleus" EXACT [ZFA:0000713]
synonym: "abducens nerve nucleus" EXACT [FMA:54504]
synonym: "abducens VI nucleus" EXACT [MA:0001010]
synonym: "abducent nucleus" EXACT [FMA:54504]
synonym: "nucleus of abducens nerve" EXACT [FMA:54504]
synonym: "nucleus of abducens nerve (VI)" EXACT [FMA:54504]
synonym: "sixth cranial nerve nucleus" EXACT [FMA:54504]
xref: FMA:54504
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png
xref: MA:0001010
xref: ncithesaurus:Abducens_Nucleus
xref: NIF_GrossAnatomy:birnlex_1366
xref: ZFA:0000713
is_a: UBERON:0000126 ! cranial nerve nucleus
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
relationship: part_of UBERON:0000988 ! pons
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002683
name: rhinal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1368-FMA_83746
def: "In the human brain, the rhinencephalon appears as a longitudinal elevation, with a corresponding internal furrow, on the under surface of the hemisphere close to the lamina terminalis; it is separated from the lateral surface of the hemisphere by a furrow, the external rhinal fissure (or rhinal sulcus), and is continuous behind with that part of the hemisphere, which will ultimately form the anterior end of the temporal lobe. [WP,unvetted]." [Wikipedia:Rhinal_sulcus]
subset: uberon_slim
synonym: "rhinal fissure" EXACT [FMA:83746]
xref: FMA:83746
xref: NIF_GrossAnatomy:birnlex_1368
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002684
name: nucleus raphe obscurus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1369-FMA_72585
def: "The nucleus raphe obscurus, despite the implications of its name, has some very specific functions and connections of afferent and efferent nature. The raphe obscurus projects to the cerebellar lobes VI and VII and to crus II along with the nucleus raphe pontis . This so called obscure nucleus has also been implicated in the modulation of the hypoglossal nerve. It has been observed that the ablation of this nucleus causes a change in the firing pattern in the XII nerve . In addition, the raphe obscurus mediates expiration via the inhibitory effect of serotonin and depresses periodic synaptic potentials . It has also been shown that this nucleus stimulates gastrointestinal motor function; microinjections of 5-HT into the n.r. obscurus increase gastric movement . [WP,unvetted]." [Wikipedia:Nucleus_raphe_obscurus]
subset: uberon_slim
synonym: "obscurus raphe nucleus" EXACT [FMA:72585]
synonym: "raphe obscurus nucleus" EXACT [FMA:72585]
xref: FMA:72585
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png
xref: MA:0002981
xref: NIF_GrossAnatomy:birnlex_1369
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002685
name: anteroventral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1372-FMA_62143
synonym: "anterior ventral nucleus of thalamus" EXACT [FMA:62143]
synonym: "anteroprincipal thalamic nucleus" EXACT [FMA:62143]
synonym: "anteroventral nucleus of thalamus" EXACT [FMA:62143]
synonym: "anteroventral thalamic nucleus" EXACT [FMA:62143]
xref: FMA:62143
xref: NIF_GrossAnatomy:birnlex_1372
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002686
name: angular gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1376-FMA_61898
def: "The angular gyrus is a region of the brain in the parietal lobe, that lies near the superior edge of the temporal lobe, and immediately posterior to the supramarginal gyrus; it is involved in a number of processes related to language, mathematics and cognition. It is Brodmann area 39 of the human brain. [WP,unvetted]." [Wikipedia:Angular_gyrus]
subset: uberon_slim
synonym: "middle part of inferior parietal lobule" EXACT [FMA:61898]
synonym: "preoccipital gyrus" EXACT [FMA:61898]
xref: FMA:61898
xref: ncithesaurus:Angular_Gyrus
xref: NIF_GrossAnatomy:birnlex_1376
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001872 ! parietal lobe
[Term]
id: UBERON:0002687
name: area x
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1379-FMA_62198
synonym: "anteromedial part of ventral lateral posterior nucleus (jones)" EXACT []
xref: FMA:62198
xref: NIF_GrossAnatomy:birnlex_1379
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001925 ! ventral lateral nucleus
[Term]
id: UBERON:0002688
name: supramarginal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1381-FMA_61897
def: "Brodmann area 40, or BA40, is part of the parietal cortex in the human brain. The inferior part of BA40 is in the area of the supramarginal gyrus, which lies at the posterior end of the lateral fissure, in the inferior lateral part of the parietal lobe. It is bounded approximately by the intraparietal sulcus, the inferior postcentral sulcus, the posterior subcentral sulcus and the lateral sulcus. Cytoarchitecturally it is bounded caudally by the angular area 39 (H), rostrally and dorsally by the caudal postcentral area 2, and ventrally by the subcentral area 43 and the superior temporal area 22 (Brodmann-1909). Cytoarchitectonically defined subregions of rostral BA40/the supramarginal gyrus are PF, PFcm, PFm, PFop, and PFt. Area PF is the homologue to macaque area PF, part of the mirror neuron system, and active in humans during imitation. The supramarginal gyrus part of Brodmann area 40 is the region in the inferior parietal lobe that is involved in reading both in regards to meaning and phonology. [WP,unvetted]." [Wikipedia:Supramarginal_gyrus]
subset: uberon_slim
synonym: "anterior part of inferior parietal lobule" EXACT [FMA:61897]
synonym: "Brodmann area 40" EXACT [Wikipedia:Supramarginal_gyrus]
synonym: "inferior parietal lobule (krieg)" EXACT []
xref: FMA:61897
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e2/Gehirn%2C_lateral_-_Hauptgyri_beschriftet.svg/200px-Gehirn%2C_lateral_-_Hauptgyri_beschriftet.svg.png
xref: ncithesaurus:Supramarginal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1381
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001872 ! parietal lobe
[Term]
id: UBERON:0002689
name: supraoptic crest
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1400-FMA_62315
synonym: "vascular organ of lamina terminalis" EXACT [FMA:62315]
xref: FMA:62315
xref: NIF_GrossAnatomy:birnlex_1400
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002690
name: anteroventral periventricular nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1401-FMA_62314
xref: FMA:62314
xref: NIF_GrossAnatomy:birnlex_1401
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002691
name: ventral tegmental area
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1415-FMA_72438
def: "The ventral tegmentum (tegmentum is Latin for covering), better known as the ventral tegmental area (VTA), is a group of neurons located close to the midline on the floor of the midbrain. The VTA, the origin of dopaminergic cell bodies that comprise the mesocorticolimbic dopamine system, is widely implicated in the drug and natural reward circuitry of the brain, cognition, motivation, drug addiction, and several psychiatric disorders. The VTA contains neurons that project to numerous areas of the brain, from the prefrontal cortex (PFC) to the caudal brainstem and everywhere in between. [WP,unvetted]." [Wikipedia:Ventral_tegmental_area]
subset: uberon_slim
synonym: "ventral tegmental area of tsai" EXACT []
synonym: "ventral tegmental nucleus (tsai)" EXACT []
synonym: "ventral tegmental nucleus of tsai" EXACT []
xref: EFO:0001935
xref: FMA:72438
xref: GAID:587
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Gray712.png/200px-Gray712.png
xref: NIF_GrossAnatomy:birnlex_1415
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002692
name: medullary raphe nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1420-FMA_68874
synonym: "raphe nuclei of medulla" EXACT [FMA:68874]
synonym: "raphe of medulla oblongata" EXACT [FMA:68874]
xref: FMA:68874
xref: NIF_GrossAnatomy:birnlex_1420
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002677 ! implied link automatically realized ! regional part of medullary raphe nuclear complex
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002693
name: occipitotemporal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1422-FMA_74518
synonym: "inferior temporal fissure" EXACT [FMA:74518]
synonym: "inferior temporal sulcus (roberts)" EXACT []
synonym: "inferior temporal sulcus (szikla)" EXACT []
synonym: "inferior temporal sulcus-2" EXACT [FMA:74518]
synonym: "occipito-temporal sulcus" EXACT [FMA:74518]
synonym: "third temporal sulcus" EXACT [FMA:74518]
xref: FMA:74518
xref: NIF_GrossAnatomy:birnlex_1422
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002694
name: anterior hypothalamic commissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1424-FMA_62053
synonym: "anterior hypothalamic commissure (ganser)" EXACT []
synonym: "anterior hypothalamic decussation of ganser" EXACT []
xref: FMA:62053
xref: NIF_GrossAnatomy:birnlex_1424
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002695
name: parieto-occipital sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1428-FMA_83754
def: "Only a small part of the Parietooccipital Fissure (or parieto-occipital sulcus) is seen on the lateral surface of the hemisphere, its chief part being on the medial surface. The lateral part of the parietooccipital fissure (Fig. 726) is situated about 5 cm. in front of the occipital pole of the hemisphere, and measures about 1.25 cm. in length. The medial part of the parietooccipital fissure (Fig. 727) runs downward and forward as a deep cleft on the medial surface of the hemisphere, and joins the calcarine fissure below and behind the posterior end of the corpus callosum. In most cases it contains a submerged gyrus. [WP,unvetted]." [Wikipedia:Parieto-occipital_sulcus]
subset: uberon_slim
synonym: "parieto-occipital fissure" EXACT [FMA:83754]
synonym: "parieto-occipital incisure" EXACT [FMA:83754]
synonym: "parietooccipital sulcus" EXACT [FMA:83754]
xref: FMA:83754
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Gray726_parieto-occipital_sulcus.png/200px-Gray726_parieto-occipital_sulcus.png
xref: ncithesaurus:Parieto-occipital_Fissure
xref: NIF_GrossAnatomy:birnlex_1428
xref: OpenCyc:Mx4rv7l_DJwpEbGdrcN5Y29ycA
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002696
name: cuneiform nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1430-FMA_72427
synonym: "parabigeminal area (mai)" EXACT []
xref: FMA:72427
xref: NIF_GrossAnatomy:birnlex_1430
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002697
name: dorsal supraoptic decussation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1433-FMA_62051
synonym: "commissure of meynert" EXACT []
synonym: "dorsal supra-optic commissure" EXACT [FMA:62051]
synonym: "dorsal supraoptic commissure" EXACT [FMA:62051]
synonym: "dorsal supraoptic commissure (of ganser)" EXACT []
synonym: "dorsal supraoptic decussation of meynert" EXACT []
synonym: "ganser's commissure" EXACT [FMA:62051]
synonym: "meynert's commissure" EXACT [FMA:62051]
synonym: "supraoptic commissure of meynert" EXACT []
synonym: "supraoptic commissures, dorsal" EXACT [FMA:62051]
xref: FMA:62051
xref: NIF_GrossAnatomy:birnlex_1433
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002698
name: preoccipital notch
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1436-FMA_83739
synonym: "occipital notch" EXACT [FMA:83739]
synonym: "preoccipital incisura" EXACT [FMA:83739]
synonym: "preoccipital incisure" EXACT [FMA:83739]
xref: FMA:83739
xref: NIF_GrossAnatomy:birnlex_1436
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002699
name: supraopticohypophysial tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1440-FMA_62054
synonym: "supra-opticohypophysial tract" EXACT [FMA:62054]
synonym: "supraopticohypophyseal tract" EXACT [FMA:62054]
xref: FMA:62054
xref: NIF_GrossAnatomy:birnlex_1440
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002700
name: subcuneiform nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1441-FMA_72428
synonym: "subcuneiform area of midbrain" EXACT [FMA:72428]
xref: FMA:72428
xref: NIF_GrossAnatomy:birnlex_1441
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002701
name: anterior median oculomotor nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1445-FMA_72423
synonym: "anterior median nucleus of oculomotor nerve" EXACT [FMA:72423]
xref: FMA:72423
xref: NIF_GrossAnatomy:birnlex_1445
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002702
name: middle frontal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1451-FMA_61859
def: "The middle frontal gyrus makes up about one-third of the frontal lobe of the human brain. (A gyrus is one of the prominent 'bumps' or 'ridges' on the surface of the human brain. ) The middle frontal gyrus, like the inferior frontal gyrus and the superior frontal gyrus, is more of a region than a true gyrus. The borders of the middle frontal gyrus are the inferior frontal sulcus below; the superior frontal sulcus above; and the precentral sulcus behind. [WP,unvetted]." [Wikipedia:Middle_frontal_gyrus]
subset: uberon_slim
synonym: "intermediate frontal gyrus" EXACT [FMA:61859]
synonym: "medial frontal gyrus" EXACT [FMA:61859]
xref: FMA:61859
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7f/Middle_frontal_gyrus.png/200px-Middle_frontal_gyrus.png
xref: ncithesaurus:Middle_Frontal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1451
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001870 ! frontal cortex
[Term]
id: UBERON:0002703
name: precentral gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1455-FMA_61894
def: "The primary motor cortex (or M1) is a brain region that in humans is located in the posterior portion of the frontal lobe. It works in association with pre-motor areas to plan and execute movements. M1 contains large neurons known as Betz cells which send long axons down the spinal cord to synapse onto alpha motor neurons which connect to the muscles. Pre-motor areas are involved in planning actions (in concert with the basal ganglia) and refining movements based upon sensory input (this requires the cerebellum). [WP,unvetted]." [Wikipedia:Precentral_gyrus]
subset: uberon_slim
synonym: "precentral convolution" EXACT [FMA:61894]
synonym: "prerolandic gyrus" EXACT [FMA:61894]
xref: EFO:0001373
xref: FMA:61894
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/eb/Ba4.png/200px-Ba4.png
xref: ncithesaurus:Precentral_Gyrus
xref: NIF_GrossAnatomy:birnlex_1455
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001870 ! frontal cortex
[Term]
id: UBERON:0002704
name: metathalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1461-FMA_62023
def: "The metathalamus is a composite structure of the thalamus, consisting of the medial geniculate nucleus and the lateral geniculate nucleus. [WP,unvetted]." [Wikipedia:Metathalamus]
subset: uberon_slim
synonym: "geniculate group of the dorsal thalamus" EXACT [FMA:62023]
xref: FMA:62023
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: NIF_GrossAnatomy:birnlex_1461
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002705
name: midline nuclear group
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1462-FMA_62020
def: "The midline nuclear group (or midline thalamic nuclei) a region of the thalamus consisting of the following nuclei: paraventricular nucleus of thalamus (nucleus paraventricularis thalami) - not to be confused with paraventricular nucleus of hypothalamus paratenial nucleus (nucleus parataenialis) reuniens nucleus (nucleus reuniens) rhomboidal nucleus (nucleus commissuralis rhomboidalis) subfascicular nucleus (nucleus subfascicularis) [WP,unvetted]." [Wikipedia:Midline_nuclear_group]
subset: uberon_slim
synonym: "median nuclei of thalamus" EXACT [FMA:62020]
synonym: "midline nuclear group" EXACT [FMA:62020]
synonym: "midline nuclei of thalamus" EXACT [FMA:62020]
synonym: "periventricular nuclei of thalamus" EXACT [FMA:62020]
xref: FMA:62020
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: NIF_GrossAnatomy:birnlex_1462
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002706
name: posterior nucleus of hypothalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1463-FMA_62350
synonym: "posterior hypothalamic area" EXACT [FMA:62350]
synonym: "posterior hypothalamic nucleus" EXACT [FMA:62350]
xref: BTO:0002461
xref: FMA:62350
xref: NIF_GrossAnatomy:birnlex_1463
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002707
name: pyramidal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1464-FMA_72634
def: "The corticospinal or pyramidal tract is a collection of axons that travel between the cerebral cortex of the brain and the spinal cord. The corticospinal tract mostly contains motor axons. It actually consists of two separate tracts in the spinal cord: the lateral corticospinal tract and the medial corticospinal tract. An understanding of these tracts leads to an understanding of why for the most part, one side of the body is controlled by the opposite side of the brain. Also the corticobulbar tract is considered to be a pyramidal tract. The corticobulbar tract carries signals that control motor neurons located in cranial nerve brain nuclei rather than motor neurons located in the spinal cord. The neurons of the pyramidal tracts are pyramidal neurons, but that is not how the pyramidal tract got its name, as most of the pyramidal neurons send their axons elsewhere. Instead, it got its name from the shape of the corticospinal axon tracts: when the pyramidal tract passes the medulla, it forms a dense bundle of nerve fibres that is shaped somewhat like a pyramid. [WP,unvetted]." [Wikipedia:Pyramidal_tract]
subset: uberon_slim
xref: FMA:72634
xref: GAID:702
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Gray684.png/200px-Gray684.png
xref: NIF_GrossAnatomy:birnlex_1464
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002708
name: posterior periventricular nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1466-FMA_62349
synonym: "periventricular nucleus, posterior subdivision" EXACT [FMA:62349]
synonym: "posterior periventricular nucleus" EXACT [FMA:62349]
xref: BTO:0002479
xref: FMA:62349
xref: NIF_GrossAnatomy:birnlex_1466
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002709
name: posterior nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1467-FMA_62024
synonym: "posterior complex of thalamus" EXACT [FMA:62024]
synonym: "posterior nuclear complex" EXACT [FMA:62024]
synonym: "posterior nuclear complex of thalamus" EXACT [FMA:62024]
synonym: "posterior thalamic nuclear group" EXACT [FMA:62024]
xref: BTO:0002462
xref: FMA:62024
xref: NIF_GrossAnatomy:birnlex_1467
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002710
name: cingulate sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1468-FMA_83748
def: "The cingulate sulcus is a sulcus (brain fold) on the medial wall of the cerebral cortex. The frontal and parietal lobes are separated by the cingulate sulcus from the cingulate gyrus. [WP,unvetted]." [Wikipedia:Cingulate_sulcus]
subset: uberon_slim
synonym: "calloso-marginal sulcus" EXACT [FMA:83748]
synonym: "callosomarginal fissure" EXACT [FMA:83748]
synonym: "callosomarginal sulcus" EXACT [FMA:83748]
synonym: "cingulate fissure" EXACT [FMA:83748]
xref: FMA:83748
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Gray727_cingulate_sulcus.svg/200px-Gray727_cingulate_sulcus.svg.png
xref: NIF_GrossAnatomy:birnlex_1468
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002711
name: nucleus of posterior commissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1470-FMA_68463
synonym: "posterior commissure nucleus" EXACT [FMA:68463]
xref: FMA:68463
xref: NIF_GrossAnatomy:birnlex_1470
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002712
name: premammillary nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1473-FMA_62348
synonym: "premammillary nuclei" EXACT [FMA:62348]
xref: FMA:62348
xref: NIF_GrossAnatomy:birnlex_1473
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002713
name: circular sulcus of insula
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1475-FMA_83753
def: "A marginal sulcus that is part of a insula [Obol]." [OBOL:automatic]
synonym: "central lobe marginal branch of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "central lobe marginal ramus of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "central lobe marginal sulcus" EXACT [OBOL:automatic]
synonym: "circular fissure" EXACT [FMA:83753]
synonym: "circular sulcus (of reil)" EXACT []
synonym: "circuminsular sulcus" EXACT [FMA:83753]
synonym: "cortex of island marginal branch of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "cortex of island marginal ramus of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "cortex of island marginal sulcus" EXACT [OBOL:automatic]
synonym: "insula lobule marginal branch of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insula lobule marginal ramus of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insula lobule marginal sulcus" EXACT [OBOL:automatic]
synonym: "insula marginal branch of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insula marginal ramus of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insula marginal sulcus" EXACT [OBOL:automatic]
synonym: "insular cortex marginal branch of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insular cortex marginal ramus of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insular cortex marginal sulcus" EXACT [OBOL:automatic]
synonym: "insular lobe marginal branch of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insular lobe marginal ramus of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insular lobe marginal sulcus" EXACT [OBOL:automatic]
synonym: "insular region marginal branch of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insular region marginal ramus of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "insular region marginal sulcus" EXACT [OBOL:automatic]
synonym: "island of reil marginal branch of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "island of reil marginal ramus of cingulate sulcus" EXACT [OBOL:automatic]
synonym: "island of reil marginal sulcus" EXACT [OBOL:automatic]
synonym: "limiting fissure" EXACT [FMA:83753]
synonym: "marginal branch of cingulate sulcus of central lobe" EXACT [OBOL:automatic]
synonym: "marginal branch of cingulate sulcus of cortex of island" EXACT [OBOL:automatic]
synonym: "marginal branch of cingulate sulcus of insula" EXACT [OBOL:automatic]
synonym: "marginal branch of cingulate sulcus of insula lobule" EXACT [OBOL:automatic]
synonym: "marginal branch of cingulate sulcus of insular cortex" EXACT [OBOL:automatic]
synonym: "marginal branch of cingulate sulcus of insular lobe" EXACT [OBOL:automatic]
synonym: "marginal branch of cingulate sulcus of insular region" EXACT [OBOL:automatic]
synonym: "marginal branch of cingulate sulcus of island of reil" EXACT [OBOL:automatic]
synonym: "marginal ramus of cingulate sulcus of central lobe" EXACT [OBOL:automatic]
synonym: "marginal ramus of cingulate sulcus of cortex of island" EXACT [OBOL:automatic]
synonym: "marginal ramus of cingulate sulcus of insula" EXACT [OBOL:automatic]
synonym: "marginal ramus of cingulate sulcus of insula lobule" EXACT [OBOL:automatic]
synonym: "marginal ramus of cingulate sulcus of insular cortex" EXACT [OBOL:automatic]
synonym: "marginal ramus of cingulate sulcus of insular lobe" EXACT [OBOL:automatic]
synonym: "marginal ramus of cingulate sulcus of insular region" EXACT [OBOL:automatic]
synonym: "marginal ramus of cingulate sulcus of island of reil" EXACT [OBOL:automatic]
synonym: "marginal sulcus of central lobe" EXACT [OBOL:automatic]
synonym: "marginal sulcus of cortex of island" EXACT [OBOL:automatic]
synonym: "marginal sulcus of insula" EXACT [FMA:83753]
synonym: "marginal sulcus of insula lobule" EXACT [OBOL:automatic]
synonym: "marginal sulcus of insular cortex" EXACT [OBOL:automatic]
synonym: "marginal sulcus of insular lobe" EXACT [OBOL:automatic]
synonym: "marginal sulcus of insular region" EXACT [OBOL:automatic]
synonym: "marginal sulcus of island of reil" EXACT [OBOL:automatic]
xref: FMA:83753
xref: NIF_GrossAnatomy:birnlex_1475
is_a: UBERON:0002912 ! marginal sulcus
relationship: part_of UBERON:0002022
intersection_of: UBERON:0002912 ! marginal sulcus
intersection_of: part_of UBERON:0002022 ! insula
[Term]
id: UBERON:0002714
name: rubrospinal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1476-FMA_72640
def: "long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the red nucleus of the midbrain towards target cells in the spinal cord[GO]." [Wikipedia:Rubrospinal_tract]
subset: uberon_slim
synonym: "monakow's tract" EXACT [FMA:72640]
xref: FMA:72640
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png
xref: NIF_GrossAnatomy:birnlex_1476
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002715
name: spinal trigeminal tract of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1477-FMA_72625
xref: FMA:72625
xref: NIF_GrossAnatomy:birnlex_1477
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002716
name: collateral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1480-FMA_83751
def: "The collateral fissure (or sulcus) is on the tentorial surface of the hemisphere and extends from near the occipital pole to within a short distance of the temporal pole. Behind, it lies below and lateral to the calcarine fissure, from which it is separated by the lingual gyrus; in front, it is situated between the hippocampal gyrus and the anterior part of the fusiform gyrus. [WP,unvetted]." [Wikipedia:Collateral_fissure]
subset: uberon_slim
synonym: "collateral fissure" EXACT [FMA:83751]
xref: FMA:83751
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray738.png/200px-Gray738.png
xref: ncithesaurus:Collateral_Fissure
xref: NIF_GrossAnatomy:birnlex_1480
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002717
name: rostral interstitial nucleus of medial longitudinal fasciculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1481-FMA_72433
def: "The rostral interstitial nucleus of medial longitudinal fasciculus (riMLF) is a portion of the medial longitudinal fasciculus which controls vertical gaze. They project to the vestibular nuclei. [WP,unvetted]." [Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus]
subset: uberon_slim
synonym: "rostral interstitial nucleus of mlf" EXACT []
xref: FMA:72433
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/90/Gray710.png/200px-Gray710.png
xref: NIF_GrossAnatomy:birnlex_1481
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002718
name: solitary tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1483-FMA_72619
def: "The solitary tract is a compact fiber bundle that extends longitudinally through the posterolateral region of the medulla. The solitary tract is surrounded by the nucleus of the solitary tract, and descends to the upper cervical segments of the spinal cord. [WP,unvetted]." [Wikipedia:Solitary_tract]
subset: uberon_slim
synonym: "respiratory bundle of gierke" EXACT []
xref: FMA:72619
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray695.png/200px-Gray695.png
xref: NIF_GrossAnatomy:birnlex_1483
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002719
name: spino-olivary tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1484-FMA_72643
def: "The spino-olivary tract is located in the ventral funiculus of the spinal cord. This tract carries proprioception information from muscles and tendons as well as cutaneous impulses to the olivary nucleus. [WP,unvetted]." [Wikipedia:Spino-olivary_tract]
subset: uberon_slim
synonym: "helweg's tract" EXACT [FMA:72643]
xref: FMA:72643
xref: NIF_GrossAnatomy:birnlex_1484
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002720
name: mammillary peduncle
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1486-FMA_62061
synonym: "peduncle of mammillary body" EXACT [FMA:62061]
xref: FMA:62061
xref: NIF_GrossAnatomy:birnlex_1486
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002721
name: lateral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1487-FMA_77801
def: "The lateral sulcus (also called Sylvian fissure or lateral fissure) is one of the most prominent structures of the human brain. [WP,unvetted]." [Wikipedia:Lateral_sulcus]
subset: uberon_slim
synonym: "fissure of sylvius" EXACT []
synonym: "lateral cerebral fissure" EXACT [FMA:77801]
synonym: "lateral cerebral sulcus" EXACT [FMA:77801]
synonym: "lateral fissure" EXACT [FMA:77801]
synonym: "lateral fissure of sylvius" EXACT []
synonym: "transverse cerebral fissure" EXACT [FMA:77801]
xref: FMA:77801
xref: ncithesaurus:Fissure_of_Sylvius
xref: NIF_GrossAnatomy:birnlex_1487
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002722
name: trochlear nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1488-FMA_54518
def: "The nucleus of the trochlear nerve is located in the midbrain, at the level of the inferior colliculus. It is a motor nucleus, so located near the midline. Oddly, fibers from the trochlear nucleus cross over in the midbrain at the superior medullary velum and exit posteriorly, (this is the only cranial nerve to do so). The nerve then goes around the midbrain, and is visible coming out the sides. [WP,unvetted]." [Wikipedia:Trochlear_nucleus]
subset: uberon_slim
synonym: "fourth cranial nerve nucleus" EXACT [FMA:54518]
synonym: "nucleus of trochlear nerve" EXACT [FMA:54518]
synonym: "trochlear IV nucleus" EXACT [MA:0001075]
synonym: "trochlear motor nucleus" EXACT [ZFA:0000450]
xref: FMA:54518
xref: http://upload.wikimedia.org/wikipedia/en/thumb/c/c6/Drn.png/200px-Drn.png
xref: MA:0001075
xref: NIF_GrossAnatomy:birnlex_1488
xref: ZFA:0000450
is_a: UBERON:0000126 ! cranial nerve nucleus
relationship: part_of UBERON:0001644 ! trochlear nerve
[Term]
id: UBERON:0002723
name: mammillary princeps fasciculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1492-FMA_62057
synonym: "principal mammillary fasciculus" EXACT [FMA:62057]
synonym: "principle mamillary fasciculus" EXACT [FMA:62057]
xref: FMA:62057
xref: NIF_GrossAnatomy:birnlex_1492
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002724
name: limen of insula
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1493-FMA_75266
synonym: "angulus gyri olfactorii lateralis" EXACT [FMA:75266]
synonym: "insula limen" EXACT [FMA:75266]
xref: FMA:75266
xref: NIF_GrossAnatomy:birnlex_1493
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002725
name: mammillotegmental fasciculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1497-FMA_62058
synonym: "gudden tract" EXACT [FMA:62058]
synonym: "mammillotegmental tract" EXACT [FMA:62058]
synonym: "von Gudden's tract" EXACT [FMA:62058]
xref: FMA:62058
xref: NIF_GrossAnatomy:birnlex_1497
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002726
name: cervical spinal cord
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1499-FMA_71166
synonym: "cervical segment of spinal cord" EXACT [FMA:71166]
synonym: "cervical segments of spinal cord [1-8]" EXACT [FMA:71166]
synonym: "cervical spinal cord" EXACT [FMA:71166]
xref: FMA:71166
xref: ncithesaurus:Cervical_Spinal_Cord
xref: NIF_GrossAnatomy:birnlex_1499
is_a: UBERON:0005844 ! spinal cord segment
[Term]
id: UBERON:0002727
name: medial medullary lamina
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1501-FMA_62470
synonym: "inner medullary lamina" EXACT [FMA:62470]
synonym: "internal medullary lamina of corpus striatum" EXACT [FMA:62470]
synonym: "internal medullary lamina of globus pallidus" EXACT [FMA:62470]
synonym: "internal medullary lamina of lentiform nucleus" EXACT [FMA:62470]
synonym: "medial medullary lamina" EXACT [FMA:62470]
synonym: "medial medullary lamina of corpus striatum" EXACT [FMA:62470]
synonym: "medial medullary lamina of pallidum" EXACT [FMA:62470]
synonym: "medial medullary stria" EXACT [FMA:62470]
xref: FMA:62470
xref: NIF_GrossAnatomy:birnlex_1501
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003931 ! implied link automatically realized ! diencephalic white matter
relationship: part_of UBERON:0001875 ! globus pallidus
[Term]
id: UBERON:0002728
name: entorhinal cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1508-FMA_72356
def: "Component of the temporal lobe on the mesial surface. The rostral and caudal boundaries of the entorhinal cortex are the rostral end of the collateral sulcus and the caudal end of the amygdala respectively. The medial boundary is the medial aspect of the temporal lobe and the lateral boundary is the collateral sulcus. (DK)." [NIF_GrossAnatomy:birnlex_1508, Wikipedia:Entorhinal_cortex]
subset: uberon_slim
synonym: "entorhinal area" RELATED [NIF_GrossAnatomy:birnlex_1508]
synonym: "entorhinal cortex" EXACT [FMA:72356]
xref: EFO:0001920
xref: FMA:72356
xref: GAID:636
xref: NIF_GrossAnatomy:birnlex_1508
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002973 ! parahippocampal gyrus
[Term]
id: UBERON:0002729
name: claustral amygdaloid area
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1515-FMA_61869
synonym: "claustrum diffusa" EXACT [FMA:61869]
synonym: "claustrum parvum" EXACT [FMA:61869]
synonym: "ventral claustrum" EXACT [FMA:61869]
synonym: "ventral portion of claustrum" EXACT [FMA:61869]
xref: FMA:61869
xref: NIF_GrossAnatomy:birnlex_1515
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002730
name: regional part of thalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1517-FMA_67705
def: "A regional part of brain that is part of a thalamus [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of thalamus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "biological structure of brain of thalamus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of thalamus" EXACT [OBOL:automatic]
synonym: "brain biological structure of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "brain biological structure of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "brain biological structure of thalamus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) biological structure of brain" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) brain anatomical structure" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) brain biological structure" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) neuraxis segment" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) regional part of brain" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) segment of brain" EXACT [OBOL:automatic]
synonym: "dorsal thalamus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "dorsal thalamus biological structure of brain" EXACT [OBOL:automatic]
synonym: "dorsal thalamus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "dorsal thalamus brain biological structure" EXACT [OBOL:automatic]
synonym: "dorsal thalamus neuraxis segment" EXACT [OBOL:automatic]
synonym: "dorsal thalamus regional part of brain" EXACT [OBOL:automatic]
synonym: "dorsal thalamus segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "neuraxis segment of thalamus" EXACT [OBOL:automatic]
synonym: "regional part of brain of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "regional part of brain of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "regional part of brain of thalamus" EXACT [OBOL:automatic]
synonym: "segment of brain of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "segment of brain of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "segment of brain of thalamus" EXACT [OBOL:automatic]
synonym: "segment of thalamus" EXACT [NIF_GrossAnatomy:birnlex_1517]
synonym: "thalamus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "thalamus biological structure of brain" EXACT [OBOL:automatic]
synonym: "thalamus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "thalamus brain biological structure" EXACT [OBOL:automatic]
synonym: "thalamus neuraxis segment" EXACT [OBOL:automatic]
synonym: "thalamus regional part of brain" EXACT [OBOL:automatic]
synonym: "thalamus segment" EXACT [FMA:67705]
synonym: "thalamus segment of brain" EXACT [OBOL:automatic]
xref: FMA:67705
xref: NIF_GrossAnatomy:birnlex_1517
is_a: UBERON:0002784 ! regional part of diencephalon
relationship: part_of UBERON:0001897
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002731
name: vestibulocochlear nerve root
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1519-FMA_72499
synonym: "central part of vestibulocochlear nerve" EXACT [FMA:72499]
synonym: "statoacoustic nerve fibers" EXACT [FMA:72499]
synonym: "vestibulocochlear nerve fibers" EXACT [FMA:72499]
synonym: "vestibulocochlear nerve roots" EXACT [FMA:72499]
xref: FMA:72499
xref: NIF_GrossAnatomy:birnlex_1519
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002732
name: longitudinal pontine fibers
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1523-FMA_72513
synonym: "longitudinal fasciculus of the pons" EXACT [FMA:72513]
synonym: "longitudinal pontine fibers" EXACT [FMA:72513]
synonym: "longitudinal pontine fibres" EXACT [FMA:72513]
xref: FMA:72513
xref: NIF_GrossAnatomy:birnlex_1523
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002733
name: intralaminar nuclear group
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1530-FMA_62021
def: "The intralaminar nucleus is a nucleus of the thalamus that contains the following nuclei: central lateral centromedian (or 'central medial') paracentral parafascicular. Some sources also include a 'central dorsal' nucleus. [WP,unvetted]." [Wikipedia:Intralaminar_thalamic_nuclei]
subset: uberon_slim
synonym: "intralaminar nuclear group" EXACT [FMA:62021]
synonym: "intralaminar nuclei of thalamus" EXACT [FMA:62021]
synonym: "intralaminar thalamic nuclei" EXACT [FMA:62021]
synonym: "nonspecific thalamic system" EXACT [FMA:62021]
xref: FMA:62021
xref: GAID:660
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Thalmus.png/200px-Thalmus.png
xref: NIF_GrossAnatomy:birnlex_1530
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002734
name: superior temporal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1534-FMA_83783
synonym: "parallel sulcus" EXACT [FMA:83783]
synonym: "sulcus t1" EXACT [FMA:83783]
synonym: "superior temporal fissure" EXACT [FMA:83783]
xref: FMA:83783
xref: ncithesaurus:Superior_Temporal_Sulcus
xref: NIF_GrossAnatomy:birnlex_1534
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002735
name: transverse pontine fibers
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1535-FMA_72514
synonym: "superficial transverse fibers of pons" EXACT [FMA:72514]
synonym: "transverse fibers of pons" EXACT [FMA:72514]
synonym: "transverse pontine fibers" EXACT [FMA:72514]
synonym: "transverse pontine fibres" EXACT [FMA:72514]
xref: FMA:72514
xref: NIF_GrossAnatomy:birnlex_1535
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002736
name: lateral nuclear group
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1537-FMA_62174
def: "The lateral nuclear group is a collection of nuclei on the lateral side of the thalamus. According to MeSH, it consists of the following: lateral dorsal nucleus lateral posterior nucleus pulvinar [WP,unvetted]." [Wikipedia:Lateral_nuclear_group]
subset: uberon_slim
synonym: "lateral nuclear group" EXACT [FMA:62174]
synonym: "lateral nucleus of thalamus" EXACT [FMA:62174]
synonym: "lateral thalamic nuclei" EXACT [FMA:62174]
xref: FMA:62174
xref: GAID:661
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: NIF_GrossAnatomy:birnlex_1537
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002737
name: lateral inferior limiting sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1540-FMA_74523
xref: FMA:74523
xref: NIF_GrossAnatomy:birnlex_1540
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002738
name: isthmus of cingulate gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1541-FMA_62502
synonym: "cingulate gyrus isthmus" EXACT [FMA:62502]
synonym: "isthmus of fornicate gyrus" EXACT [FMA:62502]
synonym: "isthmus of limbic lobe" EXACT [FMA:62502]
xref: FMA:62502
xref: NIF_GrossAnatomy:birnlex_1541
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002739
name: medial dorsal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1543-FMA_62156
def: "The medial dorsal nucleus (or dorsomedial nucleus of thalamus) is a large nucleus in the thalamus. It receives inputs from the Pre-Frontal Cortex and the Limbic System and in turn relays them to the Pre-Frontal Association Cortex. As a result, it plays a crucial role in attention, planning, organization, abstract thinking, multi-tasking and active memory. The connections of the medial dorsal nucleus have even been used to delineate the prefrontal cortex of the Göttingen minipig brain. By stereology the number of brain cells in the region has been estimated to around 6.43 million neurons in the adult human brain and 36.3 million glial cells, and with the newborn having quite different numbers: around 11.2 million neurons and 10.6 million glial cells. Lesions of the medial dorsal nucleus have been associated with Wernicke's encephalopathy [WP,unvetted]." [Wikipedia:Medial_dorsal_nucleus]
subset: uberon_slim
synonym: "dorsal medial nucleus of thalamus" EXACT [FMA:62156]
synonym: "dorsomedial nuclear group" EXACT [FMA:62156]
synonym: "dorsomedial nucleus" EXACT [FMA:62156]
synonym: "dorsomedial nucleus of thalamus" EXACT [FMA:62156]
synonym: "medial dorsal nucleus" EXACT [FMA:62156]
synonym: "medial dorsal nucleus of thalamus" EXACT [FMA:62156]
synonym: "medial nuclear group" EXACT [FMA:62156]
synonym: "medial thalamic nuclei" EXACT [FMA:62156]
synonym: "medial thalamic nucleus" EXACT [FMA:62156]
synonym: "mediodorsal nucleus" EXACT [FMA:62156]
synonym: "mediodorsal thalamic nucleus" EXACT [FMA:62156]
xref: BTO:0002453
xref: FMA:62156
xref: GAID:663
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: NIF_GrossAnatomy:birnlex_1543
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002740
name: posterior cingulate gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1546-FMA_61924
def: "The posterior cingulate cortex is the backmost part of the cingulate cortex, lying behind the anterior cingulate cortex. This is the upper part of the 'limbic lobe'. The cingulate cortex is made up of an area around the midline of the brain. Surrounding areas include the retrosplenial cortex and the precuneus. Cytoarchitectonically posterior cingulate cortex is associated with Brodmann areas 23 and 31. [WP,unvetted]." [Wikipedia:Posterior_cingulate_gyrus]
subset: uberon_slim
xref: FMA:61924
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray727.svg/200px-Gray727.svg.png
xref: NIF_GrossAnatomy:birnlex_1546
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002741
name: diagonal band
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1551-FMA_61973
def: "The diagonal band of Broca consists of fibers that are said to arise in the parolfactory area, the gyrus subcallosus and the anterior perforated substance, and course backward in the longitudinal striae to the dentate gyrus and the hippocampal region. This is a cholinergic bundle of nerve fibers posterior to the anterior perforated substance. It interconnects the paraterminal gyrus in the septal area with the hippocampus and lateral olfactory area. Along with the Septum Pellucidum the Diagonal Band of Broca is believed to be involved in the generation of theta waves in the hippocampus. [WP,unvetted]." [Wikipedia:Diagonal_band_of_Broca]
subset: uberon_slim
synonym: "broca's diagonal band" EXACT [FMA:61973]
synonym: "broca's diagonal gyrus" EXACT [FMA:61973]
synonym: "diagonal band of broca" EXACT []
synonym: "diagonal gyrus" EXACT [FMA:61973]
synonym: "olfactory fasciculus" EXACT [FMA:61973]
synonym: "olfactory radiations of zuckerkandl" EXACT []
xref: BTO:0002445
xref: FMA:61973
xref: GAID:684
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d7/Gray724.png/200px-Gray724.png
xref: NIF_GrossAnatomy:birnlex_1551
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002742
name: lamina of septum pellucidum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1554-FMA_62472
synonym: "septum pellucidum lamina" EXACT [FMA:62472]
xref: FMA:62472
xref: NIF_GrossAnatomy:birnlex_1554
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002743
name: basal forebrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1560-FMA_77700
def: "The basal forebrain is a collection of structures located ventrally to the striatum. It is considered to be the major cholinergic output of the CNS. It includes a group of structures that lie near the bottom of the front of the brain, including the nucleus basalis, diagonal band of Broca, and medial septal nuclei. These structures are important in the production of acetylcholine, which is then distributed widely throughout the brain. Acetylcholine affects the ability of brain cells to transmit information to one another, and also encourages plasticity, or learning. Thus, damage to the basal forebrain can reduce the amount of acetylcholine in the brain and impair learning. This may be one reason why basal forebrain damage can result in memory impairments such as amnesia and confabulation. One common cause of basal forebrain damage is aneurysm of the anterior communicating artery. Research, conducted by investigators from Children's Hospital Boston and the University of Helsinki, ties together previous observations about sleep and finds that nitric oxide production in the basal forebrain is both necessary and sufficient to produce sleep. This structure is defined, in part, as the place where adenosine acts on A1 receptors of cholinergic neurons. This results in hyperpolarization of cholinergic neurons, which inhibits the release of acetylcholine. Acetylcholine is known to promote wakefulness in the basal forebrain. Inhibition of acetylcholine release in the basal forebrain by adenosine causes slow wave sleep. The basal forebrain and adjacent areas are a focus for sleep research. Stimulating the basal forebrain gives rise to EEG sychrony and sleep. [WP,unvetted]." [Wikipedia:Basal_forebrain]
subset: uberon_slim
xref: BTO:0002444
xref: FMA:77700
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a4/Basal_Forebrain_Monakhos_2007.png/200px-Basal_Forebrain_Monakhos_2007.png
xref: NIF_GrossAnatomy:birnlex_1560
is_a: UBERON:0002616 ! regional part of brain
[Term]
id: UBERON:0002744
name: hilum of dentate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1561-FMA_72548
synonym: "dentate nuclear hilum" EXACT [FMA:72548]
xref: FMA:72548
xref: NIF_GrossAnatomy:birnlex_1561
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002745
name: ventral amygdalofugal projection
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1563-FMA_61977
xref: FMA:61977
xref: NIF_GrossAnatomy:birnlex_1563
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002746
name: intermediate periventricular nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1564-FMA_62328
synonym: "intermediate periventricular nucleus of hypothalamus" EXACT [FMA:62328]
synonym: "periventricular nucleus at the tuberal level" EXACT [FMA:62328]
xref: FMA:62328
xref: NIF_GrossAnatomy:birnlex_1564
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002747
name: neodentate part of dentate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1567-FMA_72539
synonym: "neodentate portion of dentate nucleus" EXACT [FMA:72539]
xref: FMA:72539
xref: NIF_GrossAnatomy:birnlex_1567
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0002132 ! dentate nucleus
[Term]
id: UBERON:0002748
name: medial lemniscus of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1570-FMA_72621
def: "A medial lemniscus that is part of a medulla [Obol]." [OBOL:automatic]
synonym: "medulla medial lemniscus" EXACT [OBOL:automatic]
xref: FMA:72621
xref: NIF_GrossAnatomy:birnlex_1570
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003002 ! medial lemniscus
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0000958
intersection_of: UBERON:0003002 ! medial lemniscus
intersection_of: part_of UBERON:0000958 ! medulla
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002749
name: regional part of cerebellar cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1571-FMA_76924
def: "A regional part of brain that is part of a cerebellar cortex [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of cerebellar cortex" EXACT [OBOL:automatic]
synonym: "biological structure of brain of cerebellar cortex" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of cerebellar cortex" EXACT [OBOL:automatic]
synonym: "brain biological structure of cerebellar cortex" EXACT [OBOL:automatic]
synonym: "cerebellar cortex anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "cerebellar cortex biological structure of brain" EXACT [OBOL:automatic]
synonym: "cerebellar cortex brain anatomical structure" EXACT [OBOL:automatic]
synonym: "cerebellar cortex brain biological structure" EXACT [OBOL:automatic]
synonym: "cerebellar cortex neuraxis segment" EXACT [OBOL:automatic]
synonym: "cerebellar cortex regional part of brain" EXACT [OBOL:automatic]
synonym: "cerebellar cortex segment of brain" EXACT [OBOL:automatic]
synonym: "cerebellar cortical segment" EXACT [FMA:76924]
synonym: "neuraxis segment of cerebellar cortex" EXACT [OBOL:automatic]
synonym: "regional part of brain of cerebellar cortex" EXACT [OBOL:automatic]
synonym: "segment of brain of cerebellar cortex" EXACT [OBOL:automatic]
synonym: "segment of cerebellar cortex" EXACT [NIF_GrossAnatomy:birnlex_1571]
xref: FMA:76924
xref: NIF_GrossAnatomy:birnlex_1571
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0002129
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0002750
name: medial longitudinal fasciculus of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1574-FMA_72618
def: "A medial longitudinal fasciculus that is part of a medulla [Obol]." [OBOL:automatic]
synonym: "medulla medial longitudinal fasciculus" EXACT [OBOL:automatic]
xref: FMA:72618
xref: NIF_GrossAnatomy:birnlex_1574
is_a: UBERON:0002309 ! medial longitudinal fasciculus
relationship: part_of UBERON:0000958
intersection_of: UBERON:0002309 ! medial longitudinal fasciculus
intersection_of: part_of UBERON:0000958 ! medulla
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002751
name: inferior temporal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1577-FMA_61907
def: "The inferior temporal gyrus is placed below the middle temporal sulcus, and is connected behind with the inferior occipital gyrus; it also extends around the infero-lateral border on to the inferior surface of the temporal lobe, where it is limited by the inferior sulcus. This region is one of the higher levels of the ventral stream of visual processing, associated with the representation of complex object features, such as global shape. It may also be involved in face perception. [WP,unvetted]." [Wikipedia:Inferior_temporal_gyrus]
subset: uberon_slim
synonym: "lateral occipitotemporal gyrus (heimer-83)" EXACT []
xref: FMA:61907
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray726.png/200px-Gray726.png
xref: ncithesaurus:Inferior_Temporal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1577
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002752
name: olivocerebellar tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1579-FMA_72638
def: "The olivocerebellar tract (olivocerebellar fibers) leaves the olivary nucleus and pass out through the hilum and decussate with those from the opposite olive in the raphé, then as internal arcuate fibers they pass partly through and partly around the opposite olive and enter the inferior peduncle to be distributed to the cerebellar hemisphere of the opposite side from which they arise. They terminate directly on Purkinje cells as the climbing fiber input system. [WP,unvetted]." [Wikipedia:Olivocerebellar_tract]
subset: uberon_slim
xref: FMA:72638
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray695.png/200px-Gray695.png
xref: NIF_GrossAnatomy:birnlex_1579
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002753
name: posterior spinocerebellar tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1585-FMA_72641
def: "The dorsal spinocerebellar tract (posterior spinocerebellar tract, Flechsig's fasciculus, Flechsig's tract) conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the ventral spinocerebellar tract. Proprioceptive information is taken to the via central processes of dorsal root ganglia (first order neurons). These central processes travel through the dorsal horn where they synapse with second order neurons of Clarke's nucleus. Axon fibers from Clarke's Nucleus convey this proprioceptive information in the spinal cord in the peripheral region of the posteriolateral funiculus ipsilaterally until it reaches the cerebellum, where unconscious proprioceptive information is processed. This tract involves two neurons and ends up on the same side of the body. [WP,unvetted]." [Wikipedia:Posterior_spinocerebellar_tract]
subset: uberon_slim
synonym: "dorsal spinocerebellar tract" EXACT [FMA:72641]
synonym: "flechsig's tract" EXACT [FMA:72641]
xref: FMA:72641
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png
xref: NIF_GrossAnatomy:birnlex_1585
is_a: UBERON:0002316 ! white matter of neuraxis
relationship: part_of UBERON:0005413 ! spinocerebellar tract
[Term]
id: UBERON:0002754
name: predorsal bundle
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1590-FMA_72614
synonym: "predorsal bundle of edinger" EXACT []
synonym: "predorsal fasciculus" EXACT [FMA:72614]
synonym: "tectospinal fibers" EXACT [FMA:72614]
xref: FMA:72614
xref: NIF_GrossAnatomy:birnlex_1590
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002755
name: pyramidal decussation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1594-FMA_72633
def: "When these pyramidal fibers are traced downward, it is found that some three-fifths or more of them leave the pyramids in successive bundles, and decussate in the anterior median fissure of the medulla oblongata, forming what is termed the pyramidal decussation or motor decussation. Having crossed the middle line, they pass down in the posterior part of the lateral funiculus as the lateral cerebrospinal fasciculus. [WP,unvetted]." [Wikipedia:Pyramidal_decussation]
subset: uberon_slim
synonym: "corticospinal decussation" EXACT [FMA:72633]
synonym: "decussation of corticospinal tract" EXACT [FMA:72633]
synonym: "decussation of pyramidal tract fibers" EXACT [FMA:72633]
synonym: "decussation of pyramids" EXACT [FMA:72633]
synonym: "decussation of pyramids of medulla" EXACT [FMA:72633]
synonym: "motor decussation" EXACT [FMA:72633]
synonym: "motor decussation of medulla" EXACT [FMA:72633]
xref: FMA:72633
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Gray684.png/200px-Gray684.png
xref: NIF_GrossAnatomy:birnlex_1594
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002756
name: anterior cingulate gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1603-FMA_61916
def: "The Anterior cingulate cortex (ACC) is the frontal part of the cingulate cortex, that resembles a 'collar' form around the corpus callosum, the fibrous bundle that relays neural signals between the right and left cerebral hemispheres of the brain. It includes both the ventral and dorsal areas of the cingulate cortex, and appears to play a role in a wide variety of autonomic functions, such as regulating blood pressure and heart rate, as well as rational cognitive functions, such as reward anticipation, decision-making, empathy and emotion. [WP,unvetted]." [Wikipedia:Anterior_cingulate_gyrus]
subset: uberon_slim
xref: FMA:61916
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/22/Gray727_anterior_cingulate_cortex.png/200px-Gray727_anterior_cingulate_cortex.png
xref: NIF_GrossAnatomy:birnlex_1603
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002757
name: regional part of epithalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1607-FMA_62013
def: "A regional part of brain that is part of a epithalamus [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of epithalamus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of epithalamus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of epithalamus" EXACT [OBOL:automatic]
synonym: "brain biological structure of epithalamus" EXACT [OBOL:automatic]
synonym: "epithalamus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "epithalamus biological structure of brain" EXACT [OBOL:automatic]
synonym: "epithalamus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "epithalamus brain biological structure" EXACT [OBOL:automatic]
synonym: "epithalamus neuraxis segment" EXACT [OBOL:automatic]
synonym: "epithalamus regional part of brain" EXACT [OBOL:automatic]
synonym: "epithalamus segment" EXACT [FMA:62013]
synonym: "epithalamus segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of epithalamus" EXACT [OBOL:automatic]
synonym: "regional part of brain of epithalamus" EXACT [OBOL:automatic]
synonym: "segment of brain of epithalamus" EXACT [OBOL:automatic]
synonym: "segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607]
xref: FMA:62013
xref: NIF_GrossAnatomy:birnlex_1607
is_a: UBERON:0002784 ! regional part of diencephalon
relationship: part_of UBERON:0001899
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001899 ! epithalamus
[Term]
id: UBERON:0002758
name: dorsal nucleus of medial geniculate body
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1608-FMA_62216
synonym: "dorsal nucleus of medial geniculate complex" EXACT [FMA:62216]
xref: BTO:0002673
xref: FMA:62216
xref: NIF_GrossAnatomy:birnlex_1608
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001927 ! medial geniculate body
[Term]
id: UBERON:0002759
name: magnocellular nucleus of medial geniculate body
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1612-FMA_62218
synonym: "medial division of medial geniculate body" EXACT [FMA:62218]
synonym: "medial geniculate complex, medial part" EXACT [FMA:62218]
synonym: "medial geniculate nucleus, medial part" EXACT [FMA:62218]
synonym: "medial magnocellular nucleus of medial geniculate body" EXACT [FMA:62218]
synonym: "medial nucleus of medial geniculate body" EXACT [FMA:62218]
xref: BTO:0002672
xref: FMA:62218
xref: NIF_GrossAnatomy:birnlex_1612
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001927 ! medial geniculate body
[Term]
id: UBERON:0002760
name: ventral corticospinal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1618-FMA_72636
def: "The anterior corticospinal tract (also called the ventral corticospinal tract, medial corticospinal tract, direct pyramidal tract, or anterior cerebrospinal fasciculus) is a small bundle of descending fibers that connect the cerebral cortex to the spinal cord. It is usually small, varying inversely in size with the lateral corticospinal tract, which is the main part of the corticospinal tract. It lies close to the anterior median fissure, and is present only in the upper part of the medulla spinalis; gradually diminishing in size as it descends, it ends about the middle of the thoracic region. It consists of descending fibers which arise from cells in the motor area of the cerebral hemisphere of the same side, and which, as they run downward in the medulla spinalis, cross in succession through the anterior white commissure to the opposite side, where they end, either directly or indirectly, by arborizing around the motor neurons in the anterior column. A few of its fibers are said to pass to the lateral column of the same side and to the gray matter at the base of the posterior column. They conduct voluntary motor impulses from the precentral gyrus to the motor centers of the cord. [WP,unvetted]." [Wikipedia:Ventral_corticospinal_tract]
subset: uberon_slim
synonym: "anterior corticospinal tract" EXACT [FMA:72636]
synonym: "anterior pyramidal tract" EXACT [FMA:72636]
synonym: "anterior tract of turck" EXACT []
synonym: "bundle of turck" EXACT []
synonym: "column of turck" EXACT []
xref: FMA:72636
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png
xref: NIF_GrossAnatomy:birnlex_1618
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002761
name: inferior frontal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1619-FMA_83757
def: "The inferior frontal sulcus is a sulcus between the middle frontal gyrus and the inferior frontal gyrus. [WP,unvetted]." [Wikipedia:Inferior_frontal_sulcus]
subset: uberon_slim
synonym: "inferior frontal fissure" EXACT [FMA:83757]
synonym: "sulcus f2" EXACT [FMA:83757]
xref: FMA:83757
xref: ncithesaurus:Inferior_Frontal_Sulcus
xref: NIF_GrossAnatomy:birnlex_1619
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002762
name: internal medullary lamina of thalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1621-FMA_62079
synonym: "internal medullary lamina of thalamus" EXACT [FMA:62079]
xref: FMA:62079
xref: NIF_GrossAnatomy:birnlex_1621
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002763
name: accessory medullary lamina
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1626-FMA_62471
synonym: "accessory medullary lamina" EXACT [FMA:62471]
synonym: "accessory medullary lamina of corpus striatum" EXACT [FMA:62471]
synonym: "incomplete medullary lamina of globus pallidus" EXACT [FMA:62471]
xref: FMA:62471
xref: NIF_GrossAnatomy:birnlex_1626
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003931 ! implied link automatically realized ! diencephalic white matter
relationship: part_of UBERON:0001875 ! globus pallidus
[Term]
id: UBERON:0002764
name: inferior precentral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1627-FMA_83764
synonym: "inferior part of precentral fissure" EXACT [FMA:83764]
xref: FMA:83764
xref: NIF_GrossAnatomy:birnlex_1627
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002765
name: lateral medullary lamina
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1634-FMA_62469
synonym: "external medullary lamina of corpus striatum" EXACT [FMA:62469]
synonym: "external medullary lamina of globus pallidus" EXACT [FMA:62469]
synonym: "external medullary lamina of lentiform nucleus" EXACT [FMA:62469]
synonym: "lateral medullary lamina" EXACT [FMA:62469]
synonym: "lateral medullary lamina of corpus striatum" EXACT [FMA:62469]
synonym: "lateral medullary lamina of pallidum" EXACT [FMA:62469]
synonym: "lateral medullary stria" EXACT [FMA:62469]
synonym: "outer medullary lamina" EXACT [FMA:62469]
xref: FMA:62469
xref: NIF_GrossAnatomy:birnlex_1634
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003931 ! implied link automatically realized ! diencephalic white matter
relationship: part_of UBERON:0001875 ! globus pallidus
[Term]
id: UBERON:0002766
name: fusiform gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1641-FMA_61908
def: "The fusiform gyrus is part of the temporal lobe. It is also known as the (discontinuous) occipitotemporal gyrus. Other sources have the fusiform gyrus above the occipitotemporal gyrus and underneath the parahippocampal gyrus. [WP,unvetted]." [Wikipedia:Fusiform_gyrus]
subset: uberon_slim
synonym: "lateral occipitotemporal gyrus" EXACT [FMA:61908]
synonym: "medial occipitotemporal gyrus-1 (heimer)" EXACT []
synonym: "occipitotemporal gyrus" EXACT [FMA:61908]
xref: FMA:61908
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray727.svg/200px-Gray727.svg.png
xref: NIF_GrossAnatomy:birnlex_1641
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002767
name: inferior rostral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1642-FMA_83767
xref: FMA:83767
xref: NIF_GrossAnatomy:birnlex_1642
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002768
name: vestibulospinal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1643-FMA_72646
def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the vestibular nucleus of the pons towards target cells in the spinal cord[GO]." [Wikipedia:Vestibulospinal_tract]
subset: uberon_slim
xref: FMA:72646
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png
xref: NIF_GrossAnatomy:birnlex_1643
xref: ZFA:0000709
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002769
name: superior temporal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1648-FMA_61905
def: "A gyrus (plural gyri) is a bump or ridge on the surface of the brain. The superior temporal gyrus is one of three (sometimes two) gyri in the temporal lobe of the human brain. The superior temporal gyrus is bounded by: the lateral sulcus above; the superior temporal sulcus (not always present or visible) below; an imaginary line drawn from the preoccipital notch to the lateral sulcus posteriorly. The superior temporal gyrus contains several important structures of the brain, including: Brodmann areas 41 and 42, marking the location of the primary auditory cortex, the cortical region responsible for the sensation of sound; Wernicke's area, Brodmann 22p, an important region for the processing of speech so that it can be understood as language. [WP,unvetted]." [Wikipedia:Superior_temporal_gyrus]
subset: uberon_slim
xref: EFO:0001944
xref: FMA:61905
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1d/Superior_temporal_gyrus.png/200px-Superior_temporal_gyrus.png
xref: ncithesaurus:Superior_Temporal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1648
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002770
name: posterior hypothalamic region
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1651-FMA_62029
synonym: "mammillary level of hypothalamus" EXACT [FMA:62029]
synonym: "mammillary region" EXACT [FMA:62029]
synonym: "posterior hypothalamus" EXACT [FMA:62029]
xref: FMA:62029
xref: GAID:651
xref: NIF_GrossAnatomy:birnlex_1651
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002771
name: middle temporal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1653-FMA_61906
def: "Middle temporal gyrus is a gyrus in the brain on the Temporal lobe. It is located between the superior temporal gyrus and inferior temporal gyrus. Its exact function is unknown, but it has been connected with processes as different as contemplating distance, recognition of known faces, and accessing word meaning while reading. [WP,unvetted]." [Wikipedia:Middle_temporal_gyrus]
subset: uberon_slim
synonym: "intermediate temporal gyrus" EXACT [FMA:61906]
xref: EFO:0002466
xref: FMA:61906
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/49/WOROI_60_loc.png/200px-WOROI_60_loc.png
xref: ncithesaurus:Middle_Temporal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1653
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002772
name: olfactory sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1655-FMA_83769
def: "The medial orbital gyrus presents a well-marked antero-posterior sulcus, the olfactory sulcus, for the olfactory tract. [WP,unvetted]." [Wikipedia:Olfactory_sulcus]
subset: uberon_slim
xref: FMA:83769
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray729_olfactory_sulcus.png/200px-Gray729_olfactory_sulcus.png
xref: ncithesaurus:Olfactory_Sulcus
xref: NIF_GrossAnatomy:birnlex_1655
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002773
name: anterior transverse temporal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1657-FMA_61909
synonym: "anterior transverse temporal convolution of heschl" EXACT []
synonym: "first transverse gyrus of heschl" EXACT []
synonym: "great transverse gyrus of heschl" EXACT []
xref: FMA:61909
xref: NIF_GrossAnatomy:birnlex_1657
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002774
name: posterior transverse temporal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1661-FMA_61910
synonym: "posterior transverse temporal convolution of heschl" EXACT []
xref: FMA:61910
xref: NIF_GrossAnatomy:birnlex_1661
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002775
name: olivocochlear bundle
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1666-FMA_72485
synonym: "bundle of rasmussen" EXACT []
synonym: "efferent cochlear bundle" EXACT [FMA:72485]
synonym: "olivocochlear bundle of rasmussen" EXACT []
synonym: "olivocochlear tract" EXACT [FMA:72485]
xref: FMA:72485
xref: NIF_GrossAnatomy:birnlex_1666
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002776
name: ventral nuclear group
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1669-FMA_62022
def: "The ventral nuclear group is a collection of nuclei on the ventral side of the thalamus. According to MeSH, it consists of the following: ventral anterior nucleus ventral lateral nucleus ventral posterior nucleus [WP,unvetted]." [Wikipedia:Ventral_nuclear_group]
subset: uberon_slim
synonym: "ventral nuclear group" EXACT [FMA:62022]
synonym: "ventral nuclear mass" EXACT [FMA:62022]
synonym: "ventral nuclei of thalamus" EXACT [FMA:62022]
synonym: "ventral tier thalamic nuclei" EXACT [FMA:62022]
xref: FMA:62022
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: NIF_GrossAnatomy:birnlex_1669
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002777
name: neostriatum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1672-FMA_77617
subset: uberon_slim
xref: BTO:0000418
xref: FMA:77617
xref: GAID:669
xref: NIF_GrossAnatomy:birnlex_1672
is_obsolete: true
[Term]
id: UBERON:0002778
name: ventral pallidum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1674-FMA_77613
xref: FMA:77613
xref: NIF_GrossAnatomy:birnlex_1674
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002779
name: lateral superior olivary nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1675-FMA_72472
def: "In anatomy, the olivary bodies or simply olives (Latin oliva and olivae, singular and plural, respectively) are a pair of prominent oval structures in the medulla oblongata, the lower portion of the brainstem. They contain the olivary nuclei. [WP,unvetted]." [Wikipedia:Accessory_olivary_nucleus]
subset: uberon_slim
synonym: "accessory olivary nucleus" EXACT [FMA:72472]
synonym: "accessory superior olivary nucleus" EXACT [FMA:72472]
synonym: "accessory superior olive" EXACT [FMA:72472]
synonym: "lateral superior olive" EXACT [FMA:72472]
synonym: "superior olivary nucleus, lateral part" EXACT [FMA:72472]
xref: FMA:72472
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9a/Gray679.png/200px-Gray679.png
xref: NIF_GrossAnatomy:birnlex_1675
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0002128 ! superior olivary complex
[Term]
id: UBERON:0002780
name: regional part of forebrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1677-FMA_61996
def: "A regional part of brain that is part of a forebrain [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of forebrain" EXACT [OBOL:automatic]
synonym: "biological structure of brain of forebrain" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of forebrain" EXACT [OBOL:automatic]
synonym: "brain biological structure of forebrain" EXACT [OBOL:automatic]
synonym: "forebrain anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "forebrain biological structure of brain" EXACT [OBOL:automatic]
synonym: "forebrain brain anatomical structure" EXACT [OBOL:automatic]
synonym: "forebrain brain biological structure" EXACT [OBOL:automatic]
synonym: "forebrain neuraxis segment" EXACT [OBOL:automatic]
synonym: "forebrain regional part of brain" EXACT [OBOL:automatic]
synonym: "forebrain segment" EXACT [FMA:61996]
synonym: "forebrain segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of forebrain" EXACT [OBOL:automatic]
synonym: "regional part of brain of forebrain" EXACT [OBOL:automatic]
synonym: "segment of brain of forebrain" EXACT [OBOL:automatic]
synonym: "segment of forebrain" EXACT [NIF_GrossAnatomy:birnlex_1677]
xref: FMA:61996
xref: NIF_GrossAnatomy:birnlex_1677
is_a: UBERON:0002616 ! regional part of brain
relationship: part_of UBERON:0001890
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0002781
name: caudal part of ventral posterolateral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1681-FMA_62206
synonym: "ventral posterior lateral nucleus (ilinsky)" EXACT []
synonym: "ventral posterolateral nucleus, caudal part" EXACT [FMA:62206]
synonym: "ventral posterolateral thalamic nucleus, caudal part" EXACT [FMA:62206]
xref: FMA:62206
xref: NIF_GrossAnatomy:birnlex_1681
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002782
name: medial superior olivary nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1682-FMA_72473
def: "The superior olivary complex (or SOC or superior olive) is a small mass of gray substance situated on the dorsal surface of the lateral part of the trapezoid body. Small in humans, but well developed in certain animals, it exhibits similar structure as the inferior olivary nucleus, and is situated immediately above it. Some of the fibers of the trapezoid body end by arborizing around the cells of this nucleus, while others arise from these cells. [WP,unvetted]." [Wikipedia:Medial_superior_olive]
subset: uberon_slim
synonym: "chief nucleus of superior olive" EXACT [FMA:72473]
synonym: "chief superior olivary nucleus" EXACT [FMA:72473]
synonym: "main superior olivary nucleus" EXACT [FMA:72473]
synonym: "medial superior olive" EXACT [FMA:72473]
synonym: "principal superior olivary nucleus" EXACT [FMA:72473]
synonym: "superior olivary nucleus, medial part" EXACT [FMA:72473]
xref: FMA:72473
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray713.png/200px-Gray713.png
xref: NIF_GrossAnatomy:birnlex_1682
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0002128 ! superior olivary complex
[Term]
id: UBERON:0002783
name: central tegmental tract of pons
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1683-FMA_72494
xref: FMA:72494
xref: NIF_GrossAnatomy:birnlex_1683
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002784
name: regional part of diencephalon
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1685-FMA_62005
def: "A regional part of brain that is part of a diencephalon [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of between brain" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of diencephalon" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of interbrain" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of mature diencephalon" EXACT [OBOL:automatic]
synonym: "between brain anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "between brain biological structure of brain" EXACT [OBOL:automatic]
synonym: "between brain brain anatomical structure" EXACT [OBOL:automatic]
synonym: "between brain brain biological structure" EXACT [OBOL:automatic]
synonym: "between brain neuraxis segment" EXACT [OBOL:automatic]
synonym: "between brain regional part of brain" EXACT [OBOL:automatic]
synonym: "between brain segment of brain" EXACT [OBOL:automatic]
synonym: "biological structure of brain of between brain" EXACT [OBOL:automatic]
synonym: "biological structure of brain of diencephalon" EXACT [OBOL:automatic]
synonym: "biological structure of brain of interbrain" EXACT [OBOL:automatic]
synonym: "biological structure of brain of mature diencephalon" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of between brain" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of diencephalon" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of interbrain" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of mature diencephalon" EXACT [OBOL:automatic]
synonym: "brain biological structure of between brain" EXACT [OBOL:automatic]
synonym: "brain biological structure of diencephalon" EXACT [OBOL:automatic]
synonym: "brain biological structure of interbrain" EXACT [OBOL:automatic]
synonym: "brain biological structure of mature diencephalon" EXACT [OBOL:automatic]
synonym: "diencephalon anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "diencephalon biological structure of brain" EXACT [OBOL:automatic]
synonym: "diencephalon brain anatomical structure" EXACT [OBOL:automatic]
synonym: "diencephalon brain biological structure" EXACT [OBOL:automatic]
synonym: "diencephalon neuraxis segment" EXACT [OBOL:automatic]
synonym: "diencephalon regional part of brain" EXACT [OBOL:automatic]
synonym: "diencephalon segment" EXACT [FMA:62005]
synonym: "diencephalon segment of brain" EXACT [OBOL:automatic]
synonym: "interbrain anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "interbrain biological structure of brain" EXACT [OBOL:automatic]
synonym: "interbrain brain anatomical structure" EXACT [OBOL:automatic]
synonym: "interbrain brain biological structure" EXACT [OBOL:automatic]
synonym: "interbrain neuraxis segment" EXACT [OBOL:automatic]
synonym: "interbrain regional part of brain" EXACT [OBOL:automatic]
synonym: "interbrain segment of brain" EXACT [OBOL:automatic]
synonym: "mature diencephalon anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "mature diencephalon biological structure of brain" EXACT [OBOL:automatic]
synonym: "mature diencephalon brain anatomical structure" EXACT [OBOL:automatic]
synonym: "mature diencephalon brain biological structure" EXACT [OBOL:automatic]
synonym: "mature diencephalon neuraxis segment" EXACT [OBOL:automatic]
synonym: "mature diencephalon regional part of brain" EXACT [OBOL:automatic]
synonym: "mature diencephalon segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of between brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of diencephalon" EXACT [OBOL:automatic]
synonym: "neuraxis segment of interbrain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of mature diencephalon" EXACT [OBOL:automatic]
synonym: "regional part of brain of between brain" EXACT [OBOL:automatic]
synonym: "regional part of brain of diencephalon" EXACT [OBOL:automatic]
synonym: "regional part of brain of interbrain" EXACT [OBOL:automatic]
synonym: "regional part of brain of mature diencephalon" EXACT [OBOL:automatic]
synonym: "segment of brain of between brain" EXACT [OBOL:automatic]
synonym: "segment of brain of diencephalon" EXACT [OBOL:automatic]
synonym: "segment of brain of interbrain" EXACT [OBOL:automatic]
synonym: "segment of brain of mature diencephalon" EXACT [OBOL:automatic]
synonym: "segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685]
xref: FMA:62005
xref: NIF_GrossAnatomy:birnlex_1685
is_a: UBERON:0002780 ! regional part of forebrain
relationship: part_of UBERON:0001894
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0002785
name: regional part of lateral hypothalamic region
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1687-FMA_62312
synonym: "lateral hypothalamic region segment" EXACT [FMA:62312]
synonym: "segment of lateral hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_1687]
xref: FMA:62312
xref: NIF_GrossAnatomy:birnlex_1687
is_a: UBERON:0003048 ! regional part of hypothalamus
[Term]
id: UBERON:0002786
name: abducens nerve fibers
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1689-FMA_72491
synonym: "abducens nerve fibers" EXACT [FMA:72491]
synonym: "central part of abducens nerve" EXACT [FMA:72491]
synonym: "root of abducens nerve" EXACT [FMA:72491]
xref: FMA:72491
xref: NIF_GrossAnatomy:birnlex_1689
is_a: UBERON:0002211 ! segment of nerve
[Term]
id: UBERON:0002787
name: decussation of trochlear nerve
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1690-FMA_72488
synonym: "decussation of trochlear nerve (IV)" EXACT [FMA:72488]
synonym: "trochlear neural decussation" EXACT [FMA:72488]
xref: FMA:72488
xref: NIF_GrossAnatomy:birnlex_1690
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002788
name: anterior nuclear group
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1692-FMA_62019
def: "The anterior nuclei of thalamus (or anterior nuclear group) are collection of nuclei at the rostral end of the dorsal thalamus. [WP,unvetted]." [Wikipedia:Anterior_nuclear_group]
subset: uberon_slim
synonym: "anterior nuclear group" EXACT [FMA:62019]
synonym: "anterior nuclei of thalamus" EXACT [FMA:62019]
synonym: "anterior nucleus of thalamus" EXACT [FMA:62019]
synonym: "anterior thalamic nuclei" EXACT [FMA:62019]
xref: FMA:62019
xref: GAID:658
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: NIF_GrossAnatomy:birnlex_1692
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002789
name: regional part of posterior hypothalamic region
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1697-FMA_62311
def: "A regional part of brain that is part of a posterior hypothalamic region [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of mammillary level of hypothalamus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of mammillary region" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of posterior hypothalamic region" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of posterior hypothalamus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of mammillary level of hypothalamus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of mammillary region" EXACT [OBOL:automatic]
synonym: "biological structure of brain of posterior hypothalamic region" EXACT [OBOL:automatic]
synonym: "biological structure of brain of posterior hypothalamus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of mammillary level of hypothalamus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of mammillary region" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of posterior hypothalamic region" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of posterior hypothalamus" EXACT [OBOL:automatic]
synonym: "brain biological structure of mammillary level of hypothalamus" EXACT [OBOL:automatic]
synonym: "brain biological structure of mammillary region" EXACT [OBOL:automatic]
synonym: "brain biological structure of posterior hypothalamic region" EXACT [OBOL:automatic]
synonym: "brain biological structure of posterior hypothalamus" EXACT [OBOL:automatic]
synonym: "mammillary level of hypothalamus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "mammillary level of hypothalamus biological structure of brain" EXACT [OBOL:automatic]
synonym: "mammillary level of hypothalamus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "mammillary level of hypothalamus brain biological structure" EXACT [OBOL:automatic]
synonym: "mammillary level of hypothalamus neuraxis segment" EXACT [OBOL:automatic]
synonym: "mammillary level of hypothalamus regional part of brain" EXACT [OBOL:automatic]
synonym: "mammillary level of hypothalamus segment of brain" EXACT [OBOL:automatic]
synonym: "mammillary region anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "mammillary region biological structure of brain" EXACT [OBOL:automatic]
synonym: "mammillary region brain anatomical structure" EXACT [OBOL:automatic]
synonym: "mammillary region brain biological structure" EXACT [OBOL:automatic]
synonym: "mammillary region neuraxis segment" EXACT [OBOL:automatic]
synonym: "mammillary region regional part of brain" EXACT [OBOL:automatic]
synonym: "mammillary region segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of mammillary level of hypothalamus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of mammillary region" EXACT [OBOL:automatic]
synonym: "neuraxis segment of posterior hypothalamic region" EXACT [OBOL:automatic]
synonym: "neuraxis segment of posterior hypothalamus" EXACT [OBOL:automatic]
synonym: "posterior hypothalamic region anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "posterior hypothalamic region biological structure of brain" EXACT [OBOL:automatic]
synonym: "posterior hypothalamic region brain anatomical structure" EXACT [OBOL:automatic]
synonym: "posterior hypothalamic region brain biological structure" EXACT [OBOL:automatic]
synonym: "posterior hypothalamic region neuraxis segment" EXACT [OBOL:automatic]
synonym: "posterior hypothalamic region regional part of brain" EXACT [OBOL:automatic]
synonym: "posterior hypothalamic region segment" EXACT [FMA:62311]
synonym: "posterior hypothalamic region segment of brain" EXACT [OBOL:automatic]
synonym: "posterior hypothalamus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "posterior hypothalamus biological structure of brain" EXACT [OBOL:automatic]
synonym: "posterior hypothalamus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "posterior hypothalamus brain biological structure" EXACT [OBOL:automatic]
synonym: "posterior hypothalamus neuraxis segment" EXACT [OBOL:automatic]
synonym: "posterior hypothalamus regional part of brain" EXACT [OBOL:automatic]
synonym: "posterior hypothalamus segment of brain" EXACT [OBOL:automatic]
synonym: "regional part of brain of mammillary level of hypothalamus" EXACT [OBOL:automatic]
synonym: "regional part of brain of mammillary region" EXACT [OBOL:automatic]
synonym: "regional part of brain of posterior hypothalamic region" EXACT [OBOL:automatic]
synonym: "regional part of brain of posterior hypothalamus" EXACT [OBOL:automatic]
synonym: "segment of brain of mammillary level of hypothalamus" EXACT [OBOL:automatic]
synonym: "segment of brain of mammillary region" EXACT [OBOL:automatic]
synonym: "segment of brain of posterior hypothalamic region" EXACT [OBOL:automatic]
synonym: "segment of brain of posterior hypothalamus" EXACT [OBOL:automatic]
synonym: "segment of posterior hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_1697]
xref: FMA:62311
xref: NIF_GrossAnatomy:birnlex_1697
is_a: UBERON:0003048 ! regional part of hypothalamus
relationship: part_of UBERON:0002770
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002770 ! posterior hypothalamic region
[Term]
id: UBERON:0002790
name: dorsal acoustic stria
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1698-FMA_72496
synonym: "posterior acoustic stria" EXACT [FMA:72496]
xref: FMA:72496
xref: NIF_GrossAnatomy:birnlex_1698
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002791
name: regional part of telencephalon
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1700-FMA_62374
def: "A regional part of brain that is part of a telencephalon [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of telencephalon" EXACT [OBOL:automatic]
synonym: "biological structure of brain of telencephalon" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of telencephalon" EXACT [OBOL:automatic]
synonym: "brain biological structure of telencephalon" EXACT [OBOL:automatic]
synonym: "neuraxis segment of telencephalon" EXACT [OBOL:automatic]
synonym: "regional part of brain of telencephalon" EXACT [OBOL:automatic]
synonym: "segment of brain of telencephalon" EXACT [OBOL:automatic]
synonym: "segment of telencephalon" EXACT [NIF_GrossAnatomy:birnlex_1700]
synonym: "telencephalon anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "telencephalon biological structure of brain" EXACT [OBOL:automatic]
synonym: "telencephalon brain anatomical structure" EXACT [OBOL:automatic]
synonym: "telencephalon brain biological structure" EXACT [OBOL:automatic]
synonym: "telencephalon neuraxis segment" EXACT [OBOL:automatic]
synonym: "telencephalon regional part of brain" EXACT [OBOL:automatic]
synonym: "telencephalon segment" EXACT [FMA:62374]
synonym: "telencephalon segment of brain" EXACT [OBOL:automatic]
xref: FMA:62374
xref: NIF_GrossAnatomy:birnlex_1700
is_a: UBERON:0002780 ! regional part of forebrain
relationship: part_of UBERON:0001893
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0002792
name: lumbar spinal cord
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1704-FMA_71168
def: "." [Wikipedia:Lumbar_spinal_cord]
subset: uberon_slim
synonym: "lumbar segment of spinal cord" EXACT [FMA:71168]
synonym: "lumbar segments of spinal cord [1-5]" EXACT [FMA:71168]
synonym: "lumbar spinal cord" EXACT [FMA:71168]
xref: FMA:71168
xref: ncithesaurus:Lumbar_Spinal_Cord
xref: NIF_GrossAnatomy:birnlex_1704
is_a: UBERON:0005844 ! spinal cord segment
[Term]
id: UBERON:0002793
name: dorsal longitudinal fasciculus of pons
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1707-FMA_72492
def: "A dorsal longitudinal fasciculus that is part of a pons [Obol]." [OBOL:automatic]
synonym: "bundle of Schutz of pons" EXACT [OBOL:automatic]
synonym: "bundle of Schutz of pons of varolius" EXACT [OBOL:automatic]
synonym: "dorsal longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic]
synonym: "fasciculus of Schutz of pons" EXACT [OBOL:automatic]
synonym: "fasciculus of Schutz of pons of varolius" EXACT [OBOL:automatic]
synonym: "pons bundle of Schutz" EXACT [OBOL:automatic]
synonym: "pons dorsal longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "pons fasciculus of Schutz" EXACT [OBOL:automatic]
synonym: "pons of varolius bundle of Schutz" EXACT [OBOL:automatic]
synonym: "pons of varolius dorsal longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "pons of varolius fasciculus of Schutz" EXACT [OBOL:automatic]
synonym: "pons of varolius posterior longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "pons posterior longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "posterior longitudinal fasciculus of pons" EXACT [OBOL:automatic]
synonym: "posterior longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic]
xref: FMA:72492
xref: NIF_GrossAnatomy:birnlex_1707
is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
is_a: UBERON:0005838 ! implied link automatically realized ! fasciculus of brain
relationship: part_of UBERON:0000988
intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus
intersection_of: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002794
name: medial longitudinal fasciculus of pons
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1708-FMA_72493
def: "A medial longitudinal fasciculus that is part of a pons [Obol]." [OBOL:automatic]
synonym: "medial longitudinal fasciculus of pons of varolius" EXACT [OBOL:automatic]
synonym: "pons medial longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "pons of varolius medial longitudinal fasciculus" EXACT [OBOL:automatic]
xref: FMA:72493
xref: NIF_GrossAnatomy:birnlex_1708
is_a: UBERON:0002309 ! medial longitudinal fasciculus
relationship: part_of UBERON:0000988
intersection_of: UBERON:0002309 ! medial longitudinal fasciculus
intersection_of: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002795
name: frontal pole
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1716-FMA_74885
def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]." [Wikipedia:Frontal_pole]
subset: uberon_slim
xref: FMA:74885
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Human_brain_lateral_view_description.JPG/200px-Human_brain_lateral_view_description.JPG
xref: NIF_GrossAnatomy:birnlex_1716
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002796
name: motor root of trigeminal nerve
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1717-FMA_52612
synonym: "motor branch of trigeminal nerve" EXACT [FMA:52612]
synonym: "motor root of nervus v" EXACT []
synonym: "radix motoria (Nervus trigeminus [V])" EXACT [FMA:52612]
xref: FMA:52612
xref: NIF_GrossAnatomy:birnlex_1717
is_a: UBERON:0002211 ! segment of nerve
[Term]
id: UBERON:0002797
name: dorsal trigeminal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1718-FMA_72500
def: "The dorsal trigeminal tract (dorsal trigeminothalamic tract, or lemniscus) is a tract which receives signals from Meissner's corpuscles and Pacinian corpuscles. this tract arises from Principal trigeminal nucleus and terminates in the VPM nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Dorsal_trigeminal_tract]
subset: uberon_slim
synonym: "dorsal ascending trigeminal tract" EXACT [FMA:72500]
synonym: "dorsal division of trigeminal lemniscus" EXACT [FMA:72500]
synonym: "dorsal secondary ascending tract of v" EXACT []
synonym: "dorsal secondary tract of v" EXACT []
synonym: "dorsal trigeminal lemniscus" EXACT [FMA:72500]
synonym: "dorsal trigeminal pathway" EXACT [FMA:72500]
synonym: "dorsal trigeminothalamic tract" EXACT [FMA:72500]
synonym: "posterior trigeminothalamic tract" EXACT [FMA:72500]
synonym: "reticulothalamic tract" EXACT [FMA:72500]
synonym: "uncrossed dorsal trigeminothalamic tract" EXACT [FMA:72500]
xref: FMA:72500
xref: NIF_GrossAnatomy:birnlex_1718
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002798
name: spinothalamic tract of pons
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1719-FMA_72504
def: "A spinothalamic tract of medulla that is part of a pons [Obol]." [OBOL:automatic]
synonym: "pons of varolius spinothalamic tract" EXACT [OBOL:automatic]
synonym: "pons of varolius spinothalamic tract of medulla" EXACT [OBOL:automatic]
synonym: "pons spinothalamic tract" EXACT [OBOL:automatic]
synonym: "pons spinothalamic tract of medulla" EXACT [OBOL:automatic]
synonym: "spinothalamic tract of medulla of pons" EXACT [OBOL:automatic]
synonym: "spinothalamic tract of medulla of pons of varolius" EXACT [OBOL:automatic]
synonym: "spinothalamic tract of pons of varolius" EXACT [OBOL:automatic]
xref: FMA:72504
xref: NIF_GrossAnatomy:birnlex_1719
is_a: UBERON:0002944 ! spinothalamic tract of medulla
relationship: part_of UBERON:0000988
intersection_of: UBERON:0002944 ! spinothalamic tract of medulla
intersection_of: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002799
name: fronto-orbital sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1724-FMA_83768
synonym: "fronto-orbital dimple" EXACT [FMA:83768]
synonym: "orbito-frontal sulcus" EXACT [FMA:83768]
xref: FMA:83768
xref: NIF_GrossAnatomy:birnlex_1724
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002800
name: spinal trigeminal tract of pons
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1725-FMA_72507
xref: FMA:72507
xref: NIF_GrossAnatomy:birnlex_1725
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002801
name: stratum zonale of thalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1727-FMA_83905
synonym: "neuraxis stratum" EXACT [FMA:83905]
xref: FMA:83905
xref: NIF_GrossAnatomy:birnlex_1727
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002802
name: left parietal lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1728-FMA_72974
xref: FMA:72974
xref: NIF_GrossAnatomy:birnlex_1728
is_a: UBERON:0001872 ! implied link automatically realized ! parietal lobe
relationship: part_of UBERON:0002812
intersection_of: UBERON:0001872 ! parietal lobe
intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
relationship: spatially_disjoint_from UBERON:0002803 ! right parietal lobe
[Term]
id: UBERON:0002803
name: right parietal lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1729-FMA_72973
xref: FMA:72973
xref: NIF_GrossAnatomy:birnlex_1729
is_a: UBERON:0001872 ! implied link automatically realized ! parietal lobe
relationship: part_of UBERON:0002813
intersection_of: UBERON:0001872 ! parietal lobe
intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
[Term]
id: UBERON:0002804
name: left limbic lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1780-FMA_72981
xref: FMA:72981
xref: NIF_GrossAnatomy:birnlex_1780
is_a: UBERON:0002600 ! implied link automatically realized ! limbic lobe
relationship: part_of UBERON:0002812
intersection_of: UBERON:0002600 ! limbic lobe
intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere
[Term]
id: UBERON:0002805
name: right limbic lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1781-FMA_72980
xref: FMA:72980
xref: NIF_GrossAnatomy:birnlex_1781
is_a: UBERON:0002600 ! implied link automatically realized ! limbic lobe
relationship: part_of UBERON:0002813
intersection_of: UBERON:0002600 ! limbic lobe
intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere
[Term]
id: UBERON:0002806
name: left occipital lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1782-FMA_72976
xref: FMA:72976
xref: NIF_GrossAnatomy:birnlex_1782
is_a: UBERON:0002021 ! implied link automatically realized ! occipital lobe
relationship: part_of UBERON:0002812
intersection_of: UBERON:0002021 ! occipital lobe
intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
relationship: spatially_disjoint_from UBERON:0002807 ! right occipital lobe
[Term]
id: UBERON:0002807
name: right occipital lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1783-FMA_72975
xref: FMA:72975
xref: NIF_GrossAnatomy:birnlex_1783
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rv9OFy5wpEbGdrcN5Y29ycA
is_a: UBERON:0002021 ! implied link automatically realized ! occipital lobe
relationship: part_of UBERON:0002813
intersection_of: UBERON:0002021 ! occipital lobe
intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
[Term]
id: UBERON:0002808
name: left temporal lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1784-FMA_72972
xref: FMA:72972
xref: NIF_GrossAnatomy:birnlex_1784
xref: OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rwQLi-ZwpEbGdrcN5Y29ycA
is_a: UBERON:0001871 ! implied link automatically realized ! temporal lobe
relationship: part_of UBERON:0002812
intersection_of: UBERON:0001871 ! temporal lobe
intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere
[Term]
id: UBERON:0002809
name: right temporal lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1785-FMA_72971
xref: FMA:72971
xref: NIF_GrossAnatomy:birnlex_1785
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rwQLi-ZwpEbGdrcN5Y29ycA
is_a: UBERON:0001871 ! implied link automatically realized ! temporal lobe
relationship: part_of UBERON:0002813
intersection_of: UBERON:0001871 ! temporal lobe
intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere
[Term]
id: UBERON:0002810
name: right frontal lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1786-FMA_72969
xref: FMA:72969
xref: NIF_GrossAnatomy:birnlex_1786
is_a: UBERON:0001870 ! implied link automatically realized ! frontal cortex
relationship: part_of UBERON:0002813
intersection_of: UBERON:0001870 ! frontal cortex
intersection_of: part_of UBERON:0002813 ! right cerebral hemisphere
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
[Term]
id: UBERON:0002811
name: left frontal lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1787-FMA_72970
xref: FMA:72970
xref: NIF_GrossAnatomy:birnlex_1787
is_a: UBERON:0001870 ! implied link automatically realized ! frontal cortex
relationship: part_of UBERON:0002812
intersection_of: UBERON:0001870 ! frontal cortex
intersection_of: part_of UBERON:0002812 ! left cerebral hemisphere
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
relationship: spatially_disjoint_from UBERON:0002810 ! right frontal lobe
[Term]
id: UBERON:0002812
name: left cerebral hemisphere
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1795-FMA_61819
xref: FMA:61819
xref: ncithesaurus:Left_Cerebral_Hemisphere
xref: NIF_GrossAnatomy:birnlex_1795
is_a: UBERON:0001869 ! implied link automatically realized ! cerebral hemisphere
relationship: in_left_side_of UBERON:0000955
intersection_of: UBERON:0001869 ! cerebral hemisphere
intersection_of: in_left_side_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002813
name: right cerebral hemisphere
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1797-FMA_67292
xref: FMA:67292
xref: ncithesaurus:Right_Cerebral_Hemisphere
xref: NIF_GrossAnatomy:birnlex_1797
xref: OpenCyc:Mx8Ngh4rvgHsHZwpEbGdrcN5Y29ycB4rvigx5ZwpEbGdrcN5Y29ycA
is_a: UBERON:0001869 ! implied link automatically realized ! cerebral hemisphere
relationship: in_right_side_of UBERON:0000955
intersection_of: UBERON:0001869 ! cerebral hemisphere
intersection_of: in_right_side_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002814
name: posterior superior fissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081254-FMA_83733
synonym: "post-clival fissure" EXACT [FMA:83733]
synonym: "postclival fissure" EXACT [FMA:83733]
synonym: "postlunate fissure" EXACT [FMA:83733]
xref: FMA:83733
xref: NIF_GrossAnatomy:birnlex_20081254
xref: NIF_GrossAnatomy:nlx_anat_20081254
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002815
name: horizontal fissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081255-FMA_14697
def: "The largest and deepest fissure in the cerebellum is named the horizontal sulcus (or horizontal fissure). It commences in front of the pons, and passes horizontally around the free margin of the hemisphere to the middle line behind, and divides the cerebellum into an upper and a lower portion. [WP,unvetted]." [Wikipedia:Horizontal_fissure_of_cerebellum]
synonym: "horizontal fissure of cerebellum" EXACT []
synonym: "horizontal sulcus" EXACT []
xref: FMA:14697
xref: FMA:75135
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Gray702.png/200px-Gray702.png
xref: NIF_GrossAnatomy:birnlex_20081255
xref: NIF_GrossAnatomy:nlx_anat_20081255
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002816
name: prepyramidal fissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081257-FMA_75138
synonym: "prebiventral fissure of cerebellum" EXACT [FMA:75138]
synonym: "prepyramidal sulcus" EXACT [FMA:75138]
xref: FMA:75138
xref: NIF_GrossAnatomy:birnlex_20081257
xref: NIF_GrossAnatomy:nlx_anat_20081257
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002817
name: secondary fissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081258-FMA_84043
synonym: "post-pyramidal fissure of cerebellum" EXACT [FMA:84043]
synonym: "postpyramidal fissure" EXACT [FMA:84043]
synonym: "secondary fissure" EXACT [FMA:84043]
xref: FMA:84043
xref: NIF_GrossAnatomy:birnlex_20081258
xref: NIF_GrossAnatomy:nlx_anat_20081258
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002818
name: posterolateral fissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081259-FMA_83730
synonym: "dorsolateral fissure of cerebellum" EXACT [FMA:83730]
synonym: "prenodular fissure" EXACT [FMA:83730]
synonym: "prenodular sulcus" EXACT [FMA:83730]
synonym: "uvulonodular fissure" EXACT [FMA:83730]
xref: FMA:83730
xref: NIF_GrossAnatomy:birnlex_20081259
xref: NIF_GrossAnatomy:nlx_anat_20081259
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002819
name: apex of cochlea
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2523-FMA_75641
def: "The cupula is a structure in the vestibular system, sensing proprioception. The cupula is located within the ampullae of each of the three semicircular canals. As fluid rushes by the cupula, hair cells within it sense rotational acceleration, and transmit the corresponding signal to the brain through the vestibulocochlear nerve (CN VIII) In their natural orientation within the head, the cupulae are located on the medial aspect of the semicircular canals. In this orientation, the kinocilia rest on the posterior aspect of the cupula. [WP,unvetted]." [Wikipedia:Apex_of_cochlea]
subset: uberon_slim
synonym: "cochlea apex" EXACT [FMA:75641]
synonym: "cupula of cochlea" EXACT [FMA:75641]
xref: FMA:75641
xref: NIF_GrossAnatomy:birnlex_2523
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002820
name: zona arcuata of basilar membrane of cochlea
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2528-FMA_75709
xref: FMA:75709
xref: NIF_GrossAnatomy:birnlex_2528
is_a: UBERON:0000476 ! acellular anatomical structure
[Term]
id: UBERON:0002822
name: macula lutea proper
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2542-FMA_58671
xref: FMA:58671
xref: NIF_GrossAnatomy:birnlex_2542
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000053 ! macula lutea
[Term]
id: UBERON:0002823
name: clivus of fovea centralis
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2544-FMA_58674
comment: NIF differs from FMA
synonym: "fovea centralis clivus" EXACT [FMA:58674]
xref: FMA:58674
xref: NIF_GrossAnatomy:birnlex_2544
is_a: UBERON:0000466 ! immaterial anatomical entity
relationship: part_of UBERON:0001786 ! fovea centralis
[Term]
id: UBERON:0002824
name: vestibular ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2549-FMA_53435
def: "The vestibular nerve ganglion (also called Scarpa's ganglion) is the ganglion of the vestibular nerve. It contains the cell bodies of the bipolar primary afferent neurons whose peripheral processes form synaptic contact with hair cells of the vestibular sensory end organs[WP,unvetted]." [Wikipedia:Vestibular_ganglion]
subset: uberon_slim
synonym: "Scarpa's ganglion" EXACT [FMA:53435]
synonym: "vestibulocochlear component" EXACT []
synonym: "vestibulocochlear VIII ganglion vestibular component" EXACT [MA:0001086]
xref: EMAPA:17573
xref: FMA:53435
xref: HOG:0000682
xref: MA:0001086
xref: ncithesaurus:Vestibular_Ganglion
xref: NIF_GrossAnatomy:birnlex_2549
is_a: UBERON:0001714 ! ganglion of cranial nerve
[Term]
id: UBERON:0002825
name: superior part of vestibular ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2551-FMA_77531
xref: FMA:77531
xref: MA:0002778
xref: NIF_GrossAnatomy:birnlex_2551
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002824 ! vestibular ganglion
[Term]
id: UBERON:0002826
name: inferior part of vestibular ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2552-FMA_77532
xref: FMA:77532
xref: MA:0002779
xref: NIF_GrossAnatomy:birnlex_2552
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002824 ! vestibular ganglion
[Term]
id: UBERON:0002827
name: auditory ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2564-ZFA_0000588
synonym: "auditory ganglion" EXACT [ZFA:0000588]
synonym: "gVIII" EXACT [ZFA:0000588]
synonym: "sag" EXACT [ZFA:0000588]
synonym: "statoacoustic ganglia" EXACT [ZFA:0000588]
xref: EHDAA:5569
xref: EHDAA:6653
xref: EHDAA2:0002196
xref: HOG:0000696
xref: MA:0001084
xref: NIF_GrossAnatomy:birnlex_2564
xref: ZFA:0000588
is_a: UBERON:0002420 ! basal ganglion
relationship: part_of UBERON:0001690 ! ear
[Term]
id: UBERON:0002828
name: ventral cochlear nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2567-FMA_54621
def: "The ventral cochlear nucleus (or anterior, or accessory), placed between the two divisions of the cochlear nerve, is on the ventral aspect of the inferior peduncle. Composed of several regions of distinct cell types, this nucleus serves primarily as a relay station for ascending auditory information. Bushy cells in the anterior ventral cochlear nucleus (AVCN), which receive end bulbs of held from auditory nerve fibers, project to the superior olivary complex through the trapezoid body and intermediate acoustic stria. Other cell types project to the lateral lemniscus and the inferior colliculus directly. [WP,unvetted]." [Wikipedia:Ventral_cochlear_nucleus]
subset: uberon_slim
synonym: "ventral cochlear nucleus" EXACT [FMA:54621]
xref: FMA:54621
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Gray760.png/200px-Gray760.png
xref: NIF_GrossAnatomy:birnlex_2567
is_a: UBERON:0001720 ! cochlear nucleus
[Term]
id: UBERON:0002829
name: dorsal cochlear nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2569-FMA_54624
def: "The dorsal cochlear nucleus (DCN, also known as the 'tuberculum acousticum'), is a cortex-like structure on the dorso-lateral surface of the brainstem. Along with the ventral cochlear nucleus, it forms the cochlear nucleus, where all auditory nerve fibers from the cochlea form their first synapses. [WP,unvetted]." [Wikipedia:Dorsal_cochlear_nucleus]
subset: uberon_slim
synonym: "dorsal cochlear nucleus" EXACT [FMA:54624]
synonym: "dorsal division of cochlear nucleus" EXACT [FMA:54624]
xref: FMA:54624
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Gray760.png/200px-Gray760.png
xref: ncithesaurus:Dorsal_Cochlear_Nucleus
xref: NIF_GrossAnatomy:birnlex_2569
is_a: UBERON:0001720 ! cochlear nucleus
[Term]
id: UBERON:0002830
name: anteroventral cochlear nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2572-FMA_72571
synonym: "anteroventral auditory nucleus" EXACT [FMA:72571]
xref: FMA:72571
xref: NIF_GrossAnatomy:birnlex_2572
is_a: UBERON:0001720 ! cochlear nucleus
[Term]
id: UBERON:0002831
name: posteroventral cochlear nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2573-FMA_72572
xref: FMA:72572
xref: NIF_GrossAnatomy:birnlex_2573
is_a: UBERON:0001720 ! cochlear nucleus
[Term]
id: UBERON:0002832
name: ventral nucleus of trapezoid body
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2576-FMA_72477
synonym: "anterior nucleus of trapezoid body" EXACT [FMA:72477]
xref: FMA:72477
xref: NIF_GrossAnatomy:birnlex_2576
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0002128 ! superior olivary complex
[Term]
id: UBERON:0002833
name: medial nucleus of trapezoid body
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2595-FMA_75732
xref: FMA:75732
xref: NIF_GrossAnatomy:birnlex_2595
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002834
name: cervical dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2599-FMA_6005
synonym: "cervical dorsal root ganglion" EXACT [FMA:6005]
xref: FMA:6005
xref: NIF_GrossAnatomy:birnlex_2599
is_a: UBERON:0000044 ! dorsal root ganglion
[Term]
id: UBERON:0002835
name: thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2600-FMA_6006
def: "A dorsal root ganglion that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "dorsal root ganglion of thorax" EXACT [OBOL:automatic]
synonym: "ganglion of dorsal root of thorax" EXACT [OBOL:automatic]
synonym: "ganglion spinalis of thorax" EXACT [OBOL:automatic]
synonym: "thoracic dorsal root ganglion" EXACT [FMA:6006]
synonym: "thorax dorsal root ganglion" EXACT [OBOL:automatic]
synonym: "thorax ganglion of dorsal root" EXACT [OBOL:automatic]
synonym: "thorax ganglion spinalis" EXACT [OBOL:automatic]
xref: FMA:6006
xref: NIF_GrossAnatomy:birnlex_2600
is_a: UBERON:0000044 ! dorsal root ganglion
is_a: UBERON:0000961 ! thoracic ganglion
relationship: part_of UBERON:0000915
intersection_of: UBERON:0000044 ! dorsal root ganglion
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0002836
name: lumbar dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2601-FMA_6007
def: "the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the lumbar vertebrae." [MP:0006404]
synonym: "lumbar dorsal root ganglion" EXACT [FMA:6007]
xref: FMA:6007
xref: NIF_GrossAnatomy:birnlex_2601
is_a: UBERON:0000044 ! dorsal root ganglion
[Term]
id: UBERON:0002837
name: sacral dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2602-FMA_6008
synonym: "sacral dorsal root ganglion" EXACT [FMA:6008]
xref: FMA:6008
xref: NIF_GrossAnatomy:birnlex_2602
is_a: UBERON:0000044 ! dorsal root ganglion
[Term]
id: UBERON:0002838
name: first cervical dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2603-FMA_6010
synonym: "first cervical dorsal root ganglion" EXACT [FMA:6010]
xref: FMA:6010
xref: NIF_GrossAnatomy:birnlex_2603
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002839
name: second cervical dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2604-FMA_6315
synonym: "second cervical dorsal root ganglion" EXACT [FMA:6315]
xref: FMA:6315
xref: NIF_GrossAnatomy:birnlex_2604
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002840
name: third cervical dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2605-FMA_6316
synonym: "third cervical dorsal root ganglion" EXACT [FMA:6316]
xref: FMA:6316
xref: NIF_GrossAnatomy:birnlex_2605
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002841
name: fourth cervical dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2606-FMA_6317
synonym: "fourth cervical dorsal root ganglion" EXACT [FMA:6317]
xref: FMA:6317
xref: NIF_GrossAnatomy:birnlex_2606
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002842
name: fifth cervical dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2607-FMA_6318
synonym: "fifth cervical dorsal root ganglion" EXACT [FMA:6318]
xref: FMA:6318
xref: NIF_GrossAnatomy:birnlex_2607
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002843
name: seventh cervical dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2609-FMA_6360
synonym: "seventh cervical dorsal root ganglion" EXACT [FMA:6360]
xref: FMA:6360
xref: NIF_GrossAnatomy:birnlex_2609
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002844
name: eighth cervical dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2610-FMA_6361
synonym: "eighth cervical dorsal root ganglion" EXACT [FMA:6361]
xref: FMA:6361
xref: NIF_GrossAnatomy:birnlex_2610
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002845
name: first thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2611-FMA_6321
synonym: "first thoracic dorsal root ganglion" EXACT [FMA:6321]
xref: FMA:6321
xref: NIF_GrossAnatomy:birnlex_2611
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002846
name: second thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2612-FMA_6322
synonym: "second thoracic dorsal root ganglion" EXACT [FMA:6322]
xref: FMA:6322
xref: NIF_GrossAnatomy:birnlex_2612
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002847
name: third thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2613-FMA_6323
synonym: "third thoracic dorsal root ganglion" EXACT [FMA:6323]
xref: FMA:6323
xref: NIF_GrossAnatomy:birnlex_2613
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002848
name: fifth thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2615-FMA_6325
synonym: "fifth thoracic dorsal root ganglion" EXACT [FMA:6325]
xref: FMA:6325
xref: NIF_GrossAnatomy:birnlex_2615
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002849
name: sixth thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2616-FMA_6326
synonym: "sixth thoracic dorsal root ganglion" EXACT [FMA:6326]
xref: FMA:6326
xref: NIF_GrossAnatomy:birnlex_2616
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002850
name: seventh thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2617-FMA_6327
synonym: "seventh thoracic dorsal root ganglion" EXACT [FMA:6327]
xref: FMA:6327
xref: NIF_GrossAnatomy:birnlex_2617
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002851
name: eighth thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2618-FMA_6328
synonym: "eighth thoracic dorsal root ganglion" EXACT [FMA:6328]
xref: FMA:6328
xref: NIF_GrossAnatomy:birnlex_2618
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002852
name: ninth thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2619-FMA_6329
synonym: "ninth thoracic dorsal root ganglion" EXACT [FMA:6329]
xref: FMA:6329
xref: NIF_GrossAnatomy:birnlex_2619
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002853
name: tenth thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2620-FMA_6330
synonym: "tenth thoracic dorsal root ganglion" EXACT [FMA:6330]
xref: FMA:6330
xref: NIF_GrossAnatomy:birnlex_2620
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002854
name: eleventh thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2621-FMA_6331
synonym: "eleventh thoracic dorsal root ganglion" EXACT [FMA:6331]
xref: FMA:6331
xref: NIF_GrossAnatomy:birnlex_2621
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002855
name: twelfth thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2622-FMA_6332
synonym: "twelfth thoracic dorsal root ganglion" EXACT [FMA:6332]
xref: FMA:6332
xref: NIF_GrossAnatomy:birnlex_2622
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002856
name: second lumbar dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2623-FMA_6336
synonym: "second lumbar dorsal root ganglion" EXACT [FMA:6336]
xref: FMA:6336
xref: NIF_GrossAnatomy:birnlex_2623
is_a: UBERON:0002836 ! lumbar dorsal root ganglion
[Term]
id: UBERON:0002857
name: first lumbar dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2624-FMA_6335
synonym: "first lumbar dorsal root ganglion" EXACT [FMA:6335]
xref: FMA:6335
xref: NIF_GrossAnatomy:birnlex_2624
is_a: UBERON:0002836 ! lumbar dorsal root ganglion
[Term]
id: UBERON:0002858
name: third lumbar dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2625-FMA_6337
synonym: "third lumbar dorsal root ganglion" EXACT [FMA:6337]
xref: FMA:6337
xref: NIF_GrossAnatomy:birnlex_2625
is_a: UBERON:0002836 ! lumbar dorsal root ganglion
[Term]
id: UBERON:0002859
name: fifth lumbar dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2627-FMA_6339
synonym: "fifth lumbar dorsal root ganglion" EXACT [FMA:6339]
xref: FMA:6339
xref: NIF_GrossAnatomy:birnlex_2627
is_a: UBERON:0002836 ! lumbar dorsal root ganglion
[Term]
id: UBERON:0002860
name: first sacral dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2628-FMA_6342
synonym: "first sacral dorsal root ganglion" EXACT [FMA:6342]
xref: FMA:6342
xref: NIF_GrossAnatomy:birnlex_2628
is_a: UBERON:0002837 ! sacral dorsal root ganglion
[Term]
id: UBERON:0002861
name: second sacral dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2629-FMA_6343
synonym: "second sacral dorsal root ganglion" EXACT [FMA:6343]
xref: FMA:6343
xref: NIF_GrossAnatomy:birnlex_2629
is_a: UBERON:0002837 ! sacral dorsal root ganglion
[Term]
id: UBERON:0002862
name: third sacral dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2630-FMA_6344
synonym: "third sacral dorsal root ganglion" EXACT [FMA:6344]
xref: FMA:6344
xref: NIF_GrossAnatomy:birnlex_2630
is_a: UBERON:0002837 ! sacral dorsal root ganglion
[Term]
id: UBERON:0002863
name: fifth sacral dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2632-FMA_6346
synonym: "fifth sacral dorsal root ganglion" EXACT [FMA:6346]
xref: FMA:6346
xref: NIF_GrossAnatomy:birnlex_2632
is_a: UBERON:0002837 ! sacral dorsal root ganglion
[Term]
id: UBERON:0002864
name: accessory cuneate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2634-FMA_72603
def: "The accessory cuneate nucleus is located lateral to the cuneate nucleus in the medulla oblongata at the level of the sensory decussation. It receives input from cervical spinal nerves and transmits that information to the cerebellum. These fibers are called cuneocerebellar (cuneate nucleus > cerebellum) fibers. In this function, the accessory cuneate nucleus is comparable to the upper extremity portion of the posterior spinocerebellar tract. [WP,unvetted]." [Wikipedia:Accessory_cuneate_nucleus]
subset: uberon_slim
synonym: "external cuneate nucleus" EXACT [FMA:72603]
synonym: "lateral cuneate nucleus" EXACT [FMA:72603]
synonym: "nucleus of corpus restiforme" EXACT [FMA:72603]
xref: FMA:72603
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png
xref: NIF_GrossAnatomy:birnlex_2634
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002865
name: arcuate nucleus of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2635-FMA_72609
def: "An arcuate nucleus of hypothalamus that is part of a medulla [Obol]." [OBOL:automatic]
synonym: "arcuate hypothalamic nucleus of medulla" EXACT [OBOL:automatic]
synonym: "arcuate nucleus of hypothalamus of medulla" EXACT [OBOL:automatic]
synonym: "arcuate nucleus-1" EXACT [FMA:72609]
synonym: "arcuate nucleus-2 of medulla" EXACT [OBOL:automatic]
synonym: "arcuate periventricular nucleus of medulla" EXACT [OBOL:automatic]
synonym: "infundibular hypothalamic nucleus of medulla" EXACT [OBOL:automatic]
synonym: "infundibular nucleus of medulla" EXACT [OBOL:automatic]
synonym: "infundibular periventricular nucleus of medulla" EXACT [OBOL:automatic]
synonym: "medial arcuate nucleus" EXACT [FMA:72609]
synonym: "medulla arcuate hypothalamic nucleus" EXACT [OBOL:automatic]
synonym: "medulla arcuate nucleus" EXACT [OBOL:automatic]
synonym: "medulla arcuate nucleus of hypothalamus" EXACT [OBOL:automatic]
synonym: "medulla arcuate nucleus-2" EXACT [OBOL:automatic]
synonym: "medulla arcuate periventricular nucleus" EXACT [OBOL:automatic]
synonym: "medulla infundibular hypothalamic nucleus" EXACT [OBOL:automatic]
synonym: "medulla infundibular nucleus" EXACT [OBOL:automatic]
synonym: "medulla infundibular periventricular nucleus" EXACT [OBOL:automatic]
xref: FMA:72609
xref: NIF_GrossAnatomy:birnlex_2635
is_a: UBERON:0001932 ! implied link automatically realized ! arcuate nucleus of hypothalamus
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0000958
intersection_of: UBERON:0001932 ! arcuate nucleus of hypothalamus
intersection_of: part_of UBERON:0000958 ! medulla
[Term]
id: UBERON:0002866
name: caudal part of spinal trigeminal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2637-FMA_72606
synonym: "caudal nucleus (kandell)" EXACT []
synonym: "spinal trigeminal nucleus, caudal part" EXACT [FMA:72606]
xref: FMA:72606
xref: NIF_GrossAnatomy:birnlex_2637
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve
[Term]
id: UBERON:0002867
name: central gray substance of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2638-FMA_72595
synonym: "medullary central gray substance" EXACT [FMA:72595]
xref: FMA:72595
xref: NIF_GrossAnatomy:birnlex_2638
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002868
name: commissural nucleus of vagus nerve
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2639-FMA_54597
synonym: "commissural nucleus-1" EXACT [FMA:54597]
synonym: "nucleus of inferior commissure" EXACT [FMA:54597]
xref: FMA:54597
xref: NIF_GrossAnatomy:birnlex_2639
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002869
name: diffuse reticular nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2641-FMA_72598
synonym: "nucleus of kolliker-fuse" EXACT []
xref: FMA:72598
xref: NIF_GrossAnatomy:birnlex_2641
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002870
name: dorsal motor nucleus of vagus nerve
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2642-FMA_54592
def: "The dorsal nucleus of the vagus nerve (or posterior motor nucleus of vagus) is a cranial nerve nucleus for the vagus nerve that arises from the floor of the fourth ventricle. It mostly serves parasympathetic vagal functions in the heart, gastrointestinal tract, lungs, and other thoracic and abdominal vagal innervations. [WP,unvetted]." [Wikipedia:Dorsal_motor_nucleus_of_vagus_nerve]
subset: uberon_slim
synonym: "dorsal efferent nucleus of vagus" EXACT [FMA:54592]
xref: FMA:54592
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/82/Gray697.png/200px-Gray697.png
xref: NIF_GrossAnatomy:birnlex_2642
is_a: UBERON:0000126 ! cranial nerve nucleus
[Term]
id: UBERON:0002871
name: hypoglossal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2644-FMA_54505
def: "The hypoglossal nucleus is a cranial nerve nucleus, and it extends the length of the medulla, and being a motor nucleus, is close to the midline. In the open medulla, it is visible as what is known as the hypoglossal trigone, a raised area (medial to the vagal trigone) protruding slightly into the fourth ventricle. In the closed medulla, the gracile and cuneate nuclei lie posteriorly, which means the nucleus is not as close to the back of the medulla as in the open medulla. It is, however, still close to the midline. [WP,unvetted]." [Wikipedia:Hypoglossal_nucleus]
subset: uberon_slim
synonym: "hypoglossal nucleus" EXACT [FMA:54505]
synonym: "hypoglossal XII nucleus" EXACT [MA:0001039]
synonym: "nucleus of hypoglossal nerve" EXACT [FMA:54505]
synonym: "twelfth cranial nerve nucleus" EXACT [FMA:54505]
xref: FMA:54505
xref: HOG:0001358
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png
xref: MA:0001039
xref: NIF_GrossAnatomy:birnlex_2644
is_a: UBERON:0000126 ! cranial nerve nucleus
[Term]
id: UBERON:0002872
name: inferior salivatory nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2645-FMA_72601
def: "In the brain, the inferior salivatory nucleus is a cluster of neurons controlling the parasympathetic input to the parotid gland. It is one of the components of the glossopharyngeal nerve. [WP,unvetted]." [Wikipedia:Inferior_salivatory_nucleus]
subset: uberon_slim
synonym: "inferior salivary nucleus" EXACT [GO:0021752]
synonym: "inferior salivatary nucleus" EXACT []
xref: FMA:72601
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a0/Gray843.png/200px-Gray843.png
xref: NIF_GrossAnatomy:birnlex_2645
is_a: UBERON:0004133 ! salivatory nucleus
relationship: part_of UBERON:0001649 ! glossopharyngeal nerve
[Term]
id: UBERON:0002873
name: interpolar part of spinal trigeminal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2646-FMA_235324
xref: FMA:235324
xref: NIF_GrossAnatomy:birnlex_2646
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve
[Term]
id: UBERON:0002874
name: lateral pericuneate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2647-FMA_72604
xref: FMA:72604
xref: NIF_GrossAnatomy:birnlex_2647
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002875
name: medial pericuneate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2648-FMA_72605
xref: FMA:72605
xref: NIF_GrossAnatomy:birnlex_2648
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002876
name: nucleus intercalatus
alt_id: UBERON:0002878
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2651-FMA_72597
comment: two NIF classes with the same name
synonym: "intercalated nucleus of medulla" EXACT [FMA:72597]
synonym: "nucleus intercalatus of medulla" EXACT [FMA:72597]
synonym: "nucleus of staderini" EXACT []
xref: FMA:72597
xref: NIF_GrossAnatomy:birnlex_2651
xref: NIF_GrossAnatomy:birnlex_2654
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002877
name: parasolitary nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2653-FMA_77091
xref: FMA:77091
xref: NIF_GrossAnatomy:birnlex_2653
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002879
name: peritrigeminal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2655-FMA_72600
xref: FMA:72600
xref: NIF_GrossAnatomy:birnlex_2655
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002880
name: pontobulbar nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2656-FMA_72608
synonym: "nucleus of circumolivary bundle" EXACT [FMA:72608]
synonym: "pontobulbar body" EXACT [FMA:72608]
xref: FMA:72608
xref: NIF_GrossAnatomy:birnlex_2656
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002881
name: sublingual nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2657-FMA_68574
def: "In the substance of the formatio reticularis are two small nuclei of gray matter. The one near the dorsal aspect of the hilus of the inferior olivary nucleus is called the Sublingual nucleus (inferior central nucleus, nucleus of Roller.) [WP,unvetted]." [Wikipedia:Sublingual_nucleus]
subset: uberon_slim
synonym: "nucleus of roller" EXACT []
xref: FMA:68574
xref: NIF_GrossAnatomy:birnlex_2657
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002882
name: supraspinal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2658-FMA_74507
xref: FMA:74507
xref: NIF_GrossAnatomy:birnlex_2658
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002883
name: central amygdaloid nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2682-FMA_74047
synonym: "central nucleus of amygdala" EXACT [FMA:74047]
xref: BTO:0002686
xref: FMA:74047
xref: MA:0002923
xref: NIF_GrossAnatomy:birnlex_2682
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002884
name: intercalated amygdaloid nuclei
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2683-FMA_61868
synonym: "intercalated amygdaloid nuclei" EXACT [FMA:61868]
synonym: "intercalated masses of nucleus amygdaloideus" EXACT [FMA:61868]
synonym: "intercalated nuclei of amygdala" EXACT [FMA:61868]
xref: FMA:61868
xref: NIF_GrossAnatomy:birnlex_2683
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002885
name: accessory basal amygdaloid nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2686-FMA_61867
xref: FMA:61867
xref: NIF_GrossAnatomy:birnlex_2686
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002886
name: lateral amygdaloid nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2687-FMA_61866
synonym: "lateral nucleus of amygdala" EXACT [FMA:61866]
synonym: "lateral principal nucleus of amygdala" EXACT [FMA:61866]
xref: BTO:0002704
xref: FMA:61866
xref: MA:0002926
xref: NIF_GrossAnatomy:birnlex_2687
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002887
name: basal amygdaloid nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2692-FMA_68855
synonym: "basolateral amygdaloid nucleus" EXACT [FMA:68855]
synonym: "basolateral nucleus (de olmos)" EXACT []
synonym: "intermediate principal nucleus" EXACT [FMA:68855]
xref: FMA:68855
xref: MA:0002921
xref: NIF_GrossAnatomy:birnlex_2692
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002888
name: lateral part of basal amygdaloid nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2695-FMA_68857
synonym: "lateral basal nucleus of the amygdala" EXACT [FMA:68857]
synonym: "lateral division of the basal nucleus" EXACT [FMA:68857]
xref: FMA:68857
xref: NIF_GrossAnatomy:birnlex_2695
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002889
name: medial part of basal amygdaloid nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2696-FMA_68858
synonym: "basomedial amygdaloid nucleus" EXACT [FMA:68858]
synonym: "medial basal nucleus of amygdala" EXACT [FMA:68858]
synonym: "medial division of basal nucleus" EXACT [FMA:68858]
xref: FMA:68858
xref: MA:0002922
xref: NIF_GrossAnatomy:birnlex_2696
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002890
name: anterior amygdaloid area
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2698-FMA_61861
xref: FMA:61861
xref: MA:0002919
xref: NIF_GrossAnatomy:birnlex_2698
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002891
name: cortical amygdaloid nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2700-FMA_61862
synonym: "posterior cortical nucleus of amygdala" EXACT [FMA:61862]
xref: BTO:0002703
xref: FMA:61862
xref: MA:0002924
xref: NIF_GrossAnatomy:birnlex_2700
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002892
name: medial amygdaloid nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2701-FMA_74046
synonym: "medial nucleus of amygdala" EXACT [FMA:74046]
xref: BTO:0002702
xref: FMA:74046
xref: MA:0002927
xref: NIF_GrossAnatomy:birnlex_2701
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002893
name: nucleus of lateral olfactory tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2702-FMA_61865
synonym: "lateral olfactory tract nucleus" EXACT [FMA:61865]
xref: FMA:61865
xref: NIF_GrossAnatomy:birnlex_2702
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002894
name: olfactory cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2707-MA_0000193
def: "The olfactory cortex is involved in the perception of smell. It receives input from the olfactory bulb and is responsible for the identification of odors[GO]." [Wikipedia:Olfactory_cortex]
subset: uberon_slim
synonym: "olfactory lobe" RELATED [MA:0000193]
xref: BTO:0001446
xref: EHDAA:5482
xref: EHDAA2:0001289
xref: HOG:0000325
xref: MA:0000193
xref: NIF_GrossAnatomy:birnlex_2707
is_a: UBERON:0002616 ! regional part of brain
[Term]
id: UBERON:0002895
name: secondary olfactory cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2709-FMA_72356
def: "Brodmann's area 28; major gateway for neocortical input to the hippocampus; origin of the perforant pathway; a component of the medial temporal lobe memory system. (CSP) * The cytoarchitecturally well-defined area of multilaminate cerebral cortex on the medial aspect of the parahippocampal gyrus, immediately caudal to the olfactory cortex of the uncus. The entorhinal cortex is the origin of the major neural fiber system afferent to the hippocampus, the so-called PERFORANT PATHWAY. (Stedman, 25th ed)." [NIF_GrossAnatomy:birnlex_2709]
comment: FMA considers this a syn of entorhinal cortex. See also brodman definition
subset: uberon_slim
synonym: "area 28 of Brodmann" EXACT []
synonym: "area 28 of Brodmann (crosby)" EXACT []
synonym: "Brodmann area 28" EXACT []
synonym: "entorhinal cortex" RELATED [FMA:72356]
synonym: "secondary olfactory cortex" EXACT [FMA:72356]
synonym: "secondary olfactory cortical area (carpenter)" EXACT []
xref: FMA:68625
xref: NIF_GrossAnatomy:birnlex_2709
is_a: UBERON:0002616 ! regional part of brain
[Term]
id: UBERON:0002896
name: telodiencephalic fissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4001-FMA_83726
synonym: "telo-diencephalic fissure" EXACT [FMA:83726]
xref: FMA:83726
xref: NIF_GrossAnatomy:birnlex_4001
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002897
name: cistern of lamina terminalis
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4002-FMA_74516
synonym: "lamina terminalis cistern" EXACT [FMA:74516]
xref: FMA:74516
xref: ncithesaurus:Lamina_Terminalis_Cistern
xref: NIF_GrossAnatomy:birnlex_4002
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002898
name: chiasmatic cistern
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4003-FMA_74515
def: "In front, the cisterna interpeduncularis extends forward across the optic chiasma, forming the cistern of chiasma or chiasmatic cistern, and on to the upper surface of the corpus callosum, for the arachnoid stretches across from one cerebral hemisphere to the other immediately beneath the free border of the falx cerebri, and thus leaves a space in which the anterior cerebral arteries are contained. The 'leaf' or extension of the chiasmatic cistern above the chiasma, which is separated from the optic recess of the third ventricle by the thin lamina terminalis, has been called the suprachiasmatic cistern. As spaces filled with freely circulating cerebrospinal fluid, cisterns receive little direct study, but are mentioned in pathological conditions. Cysts and tumors of the lamina terminalis extend into the suprachiasmatic cistern, as can pituitary tumors, or the cistern can be partially or completely effaced by injury and hematoma or by blockage of the cerebral aqueduct. [WP,unvetted]." [Wikipedia:Chiasmatic_cistern]
subset: uberon_slim
xref: FMA:74515
xref: ncithesaurus:Chiasmatic_Cistern
xref: NIF_GrossAnatomy:birnlex_4003
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002899
name: hippocampal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4004-FMA_83747
def: "The hippocampal sulcus, also known as the hippocampal fissure, is a sulcus that separates the dentate gyrus from the subiculum and the CA1 field in the hippocampus. [WP,unvetted]." [Wikipedia:Hippocampal_sulcus]
subset: uberon_slim
synonym: "dentate fissure" EXACT [FMA:83747]
synonym: "hippocampal fissure" EXACT [FMA:83747]
xref: FMA:83747
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/31/Hippocampus_%28brain%29.jpg/200px-Hippocampus_%28brain%29.jpg
xref: ncithesaurus:Hippocampal_Fissure
xref: NIF_GrossAnatomy:birnlex_4004
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002900
name: transverse occipital sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4013-FMA_83786
xref: BTO:0003786
xref: FMA:83786
xref: NIF_GrossAnatomy:birnlex_4013
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002901
name: posterior calcarine sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4015-FMA_83787
synonym: "postcalcarine sulcus" EXACT [FMA:83787]
synonym: "posterior calcarine fissure" EXACT [FMA:83787]
synonym: "posterior part of calcarine sulcus" EXACT [FMA:83787]
xref: FMA:83787
xref: NIF_GrossAnatomy:birnlex_4015
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002902
name: occipital pole
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4016-FMA_74892
def: "The anterior end of the hemisphere is named the frontal pole. The posterior end is named the occipital pole. The anterior end of the temporal lobe, the temporal pole. [WP,unvetted]." [Wikipedia:Occipital_pole]
subset: uberon_slim
xref: BTO:0001868
xref: FMA:74892
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e3/Human_brain_lateral_view_description.JPG/200px-Human_brain_lateral_view_description.JPG
xref: NIF_GrossAnatomy:birnlex_4016
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002903
name: lunate sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4017-FMA_83788
synonym: "lunate fissure" EXACT [FMA:83788]
xref: FMA:83788
xref: ncithesaurus:Lunate_Sulcus
xref: NIF_GrossAnatomy:birnlex_4017
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002904
name: lateral occipital sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4018-FMA_83785
def: "In the occipital lobe, the lateral occipital sulcus extends from behind forward, and divides the lateral surface of the occipital lobe into a superior and an inferior gyrus, which are continuous in front with the parietal and temporal lobes. [WP,unvetted]." [Wikipedia:Lateral_occipital_sulcus]
subset: uberon_slim
xref: FMA:83785
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2c/Gray727_lateral-occipital_sulcus.svg/200px-Gray727_lateral-occipital_sulcus.svg.png
xref: ncithesaurus:Lateral-occipital_Sulcus
xref: NIF_GrossAnatomy:birnlex_4018
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002905
name: intralingual sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4019-FMA_83789
xref: FMA:83789
xref: NIF_GrossAnatomy:birnlex_4019
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002906
name: anterior occipital sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4023-FMA_75758
xref: FMA:75758
xref: NIF_GrossAnatomy:birnlex_4023
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002907
name: superior postcentral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4025-FMA_83775
synonym: "postcentral dimple" EXACT [FMA:83775]
xref: FMA:83775
xref: NIF_GrossAnatomy:birnlex_4025
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002908
name: subparietal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4026-FMA_83777
synonym: "splenial sulcus" EXACT [FMA:83777]
synonym: "suprasplenial sulcus" EXACT [FMA:83777]
xref: FMA:83777
xref: NIF_GrossAnatomy:birnlex_4026
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002909
name: posterior subcentral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4027-FMA_83778
xref: FMA:83778
xref: NIF_GrossAnatomy:birnlex_4027
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002910
name: posterior ascending limb of lateral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4028-FMA_83761
synonym: "ascending terminal ramus of sylvian fissure" EXACT []
synonym: "posterior ascending limb of lateral fissure" EXACT [FMA:83761]
synonym: "posterior ramus of lateral cerebral sulcus" EXACT [FMA:83761]
xref: FMA:83761
xref: NIF_GrossAnatomy:birnlex_4028
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002911
name: parietal operculum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4029-FMA_74889
def: "The parietal operculum, forming the superior bank of the sylvian fissure, as studied in the cat, contains the secondary somatosensory representation, 'S-II', and a second somatotopic representation (parietal ventral, or PV). Anatomically, primate S-II receives inputs from area 3 and area 1, and projects to PV and area 7. PV has projections to area 5 and premotor areas. [WP,unvetted]." [Wikipedia:Parietal_operculum]
subset: uberon_slim
xref: FMA:74889
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Operculum.png/200px-Operculum.png
xref: NIF_GrossAnatomy:birnlex_4029
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002912
name: marginal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4030-FMA_83773
def: "The marginal sulcus is the portion of the cingulate sulcus adjacent to the paracentral lobule and the precuneus. It is sometimes known as the 'marginal part of the cingulate sulcus'. [WP,unvetted]." [Wikipedia:Marginal_sulcus]
subset: uberon_slim
synonym: "marginal branch of cingulate sulcus" EXACT [FMA:83773]
synonym: "marginal ramus of cingulate sulcus" EXACT [FMA:83773]
xref: FMA:83773
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d0/Gray727_marginal_sulcus.svg/200px-Gray727_marginal_sulcus.svg.png
xref: NIF_GrossAnatomy:birnlex_4030
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002913
name: intraparietal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4031-FMA_83772
def: "The intraparietal sulcus (IPS) is located on the lateral surface of the parietal lobe, and consists of an oblique and a horizontal portion. The IPS contains a series of functionally distinct subregions that have been intensively investigated using both single cell neurophysiology in primates and human functional neuroimaging. Its principal functions are related to perceptual-motor coordination (for directing eye movements and reaching) and visual attention. The IPS is also thought to play a role in other functions, including processing symbolic numerical information, visuospatial working memory and interpreting the intent of others. [WP,unvetted]." [Wikipedia:Intraparietal_sulcus]
subset: uberon_slim
synonym: "interparietal fissure" EXACT [FMA:83772]
synonym: "intraparietal fissure" EXACT [FMA:83772]
xref: BTO:0003787
xref: FMA:83772
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2a/Gray726_intraparietal_sulcus.svg/200px-Gray726_intraparietal_sulcus.svg.png
xref: ncithesaurus:Intraparietal_Sulcus
xref: NIF_GrossAnatomy:birnlex_4031
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002914
name: inferior postcentral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4032-FMA_83776
xref: FMA:83776
xref: NIF_GrossAnatomy:birnlex_4032
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002915
name: postcentral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4033-FMA_83774
def: "The postcentral sulcus of the parietal lobe lies parallel to, and behind, the central sulcus in the human brain. (A sulcus is one of the prominent grooves on the surface of the brain. ) The postcentral sulcus divides the postcentral gyrus from the remainder of the parietal lobe. [WP,unvetted]." [Wikipedia:Postcentral_sulcus]
subset: uberon_slim
synonym: "postcentral fissure of cerebral hemisphere" EXACT [FMA:83774]
synonym: "postcentral fissure-1" EXACT [FMA:83774]
xref: FMA:83774
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Postcentral_sulcus.png/200px-Postcentral_sulcus.png
xref: ncithesaurus:Postcentral_Sulcus
xref: NIF_GrossAnatomy:birnlex_4033
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002916
name: central sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4035-FMA_83752
def: "The central sulcus is a fold in the cerebral cortex of brains in vertebrates. Also called the central fissure, it was originally called the fissure of Rolando or the Rolandic fissure, after Luigi Rolando. The central sulcus is a prominent landmark of the brain, separating the parietal lobe from the frontal lobe and the primary motor cortex from the primary somatosensory cortex. [WP,unvetted]." [Wikipedia:Central_sulcus]
subset: uberon_slim
synonym: "central cerebral sulcus" EXACT [FMA:83752]
synonym: "central fissure" EXACT [FMA:83752]
synonym: "central sulcus of rolando" EXACT []
synonym: "fissure of rolando" EXACT []
synonym: "sulcus of rolando" EXACT []
xref: FMA:83752
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Central_sulcus.png/200px-Central_sulcus.png
xref: ncithesaurus:Central_Sulcus_of_Rolando
xref: NIF_GrossAnatomy:birnlex_4035
xref: OpenCyc:Mx4rvjMKxpwpEbGdrcN5Y29ycA
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002917
name: regional part of inferior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4036-FMA_77871
def: "A regional part of brain that is part of a inferior colliculus [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of caudal colliculus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of inferior colliculus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of posterior colliculus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of posterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "biological structure of brain of caudal colliculus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of inferior colliculus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of posterior colliculus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of posterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of caudal colliculus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of inferior colliculus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of posterior colliculus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of posterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "brain biological structure of caudal colliculus" EXACT [OBOL:automatic]
synonym: "brain biological structure of inferior colliculus" EXACT [OBOL:automatic]
synonym: "brain biological structure of posterior colliculus" EXACT [OBOL:automatic]
synonym: "brain biological structure of posterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "caudal colliculus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "caudal colliculus biological structure of brain" EXACT [OBOL:automatic]
synonym: "caudal colliculus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "caudal colliculus brain biological structure" EXACT [OBOL:automatic]
synonym: "caudal colliculus neuraxis segment" EXACT [OBOL:automatic]
synonym: "caudal colliculus regional part of brain" EXACT [OBOL:automatic]
synonym: "caudal colliculus segment of brain" EXACT [OBOL:automatic]
synonym: "inferior colliculus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "inferior colliculus biological structure of brain" EXACT [OBOL:automatic]
synonym: "inferior colliculus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "inferior colliculus brain biological structure" EXACT [OBOL:automatic]
synonym: "inferior colliculus neuraxis segment" EXACT [OBOL:automatic]
synonym: "inferior colliculus regional part of brain" EXACT [OBOL:automatic]
synonym: "inferior colliculus segment" EXACT [FMA:77871]
synonym: "inferior colliculus segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of caudal colliculus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of inferior colliculus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of posterior colliculus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of posterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "posterior colliculus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "posterior colliculus biological structure of brain" EXACT [OBOL:automatic]
synonym: "posterior colliculus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "posterior colliculus brain biological structure" EXACT [OBOL:automatic]
synonym: "posterior colliculus neuraxis segment" EXACT [OBOL:automatic]
synonym: "posterior colliculus regional part of brain" EXACT [OBOL:automatic]
synonym: "posterior colliculus segment of brain" EXACT [OBOL:automatic]
synonym: "posterior corpus quadrigeminum anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "posterior corpus quadrigeminum biological structure of brain" EXACT [OBOL:automatic]
synonym: "posterior corpus quadrigeminum brain anatomical structure" EXACT [OBOL:automatic]
synonym: "posterior corpus quadrigeminum brain biological structure" EXACT [OBOL:automatic]
synonym: "posterior corpus quadrigeminum neuraxis segment" EXACT [OBOL:automatic]
synonym: "posterior corpus quadrigeminum regional part of brain" EXACT [OBOL:automatic]
synonym: "posterior corpus quadrigeminum segment of brain" EXACT [OBOL:automatic]
synonym: "regional part of brain of caudal colliculus" EXACT [OBOL:automatic]
synonym: "regional part of brain of inferior colliculus" EXACT [OBOL:automatic]
synonym: "regional part of brain of posterior colliculus" EXACT [OBOL:automatic]
synonym: "regional part of brain of posterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "segment of brain of caudal colliculus" EXACT [OBOL:automatic]
synonym: "segment of brain of inferior colliculus" EXACT [OBOL:automatic]
synonym: "segment of brain of posterior colliculus" EXACT [OBOL:automatic]
synonym: "segment of brain of posterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "segment of inferior colliculus" EXACT [NIF_GrossAnatomy:birnlex_4036]
xref: FMA:77871
xref: NIF_GrossAnatomy:birnlex_4036
is_a: UBERON:0002966 ! regional part of midbrain tectum
relationship: part_of UBERON:0001946
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0002918
name: medial parabrachial nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4038-FMA_72480
def: "The Medial parabrachial nucleus is a nucleus of the pons which constitutes part of the pneumotaxic center. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]." [Wikipedia:Medial_parabrachial_nucleus]
subset: uberon_slim
xref: FMA:72480
xref: NIF_GrossAnatomy:birnlex_4038
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002919
name: anterior parolfactory sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4039-FMA_83744
synonym: "paraolfactory sulcus" EXACT [FMA:83744]
xref: FMA:83744
xref: NIF_GrossAnatomy:birnlex_4039
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002920
name: callosal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4040-FMA_83743
def: "The callosal sulcus is a sulcus in the brain between the cingulate gyrus and corpus callosum, below the longitudinal cerebral fissure. [WP,unvetted]." [Wikipedia:Callosal_sulcus]
subset: uberon_slim
synonym: "sulcus of corpus callosum" EXACT [FMA:83743]
xref: FMA:83743
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/Gray727_sulcus_of_the_corpus_callosum.svg/200px-Gray727_sulcus_of_the_corpus_callosum.svg.png
xref: NIF_GrossAnatomy:birnlex_4040
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002921
name: longitudinal fissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4041-FMA_83727
def: "The great longitudinal fissure (or longitudinal cerebral fissure, or longitudinal fissure, or interhemispheric fissure) is the deep groove which separates the two hemispheres of the vertebrate brain. The falx cerebri, a dural brain covering, lies within the medial longitudinal fissure. [WP,unvetted]." [Wikipedia:Longitudinal_fissure]
subset: uberon_slim
synonym: "hemispheric sulcus" EXACT [FMA:83727]
synonym: "interhemispheric fissure" EXACT [FMA:83727]
synonym: "longitudinal cerebral fissure" EXACT [FMA:83727]
synonym: "longitudinal sulcus" EXACT [FMA:83727]
synonym: "medial longitudinal fissure" EXACT [FMA:83727]
synonym: "sagittal fissure" EXACT [FMA:83727]
xref: FMA:83727
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Hemispheres.png/200px-Hemispheres.png
xref: ncithesaurus:Longitudinal_Fissure
xref: NIF_GrossAnatomy:birnlex_4041
xref: OpenCyc:Mx4rwJlWu5wpEbGdrcN5Y29ycA
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002922
name: olfactory trigone
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4042-FMA_74883
def: "The olfactory trigone is a small triangular area in front of the anterior perforated substance. Its apex, directed forward, occupies the posterior part of the olfactory sulcus, and is brought into view by throwing back the olfactory tract. [WP,unvetted]." [Wikipedia:Olfactory_trigone]
subset: uberon_slim
xref: FMA:74883
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png
xref: NIF_GrossAnatomy:birnlex_4042
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002923
name: posterior parolfactory sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4043-FMA_83745
xref: FMA:83745
xref: NIF_GrossAnatomy:birnlex_4043
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002924
name: terminal nerve
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4044-ZFA_0001356
def: "." [Wikipedia:Terminal_nerve]
comment: see also FMA:76566
subset: uberon_slim
synonym: "nervus terminalis" EXACT [ZFA:0001356]
xref: NIF_GrossAnatomy:birnlex_4044
xref: ZFA:0001356
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0002925
name: trigeminal nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4096-FMA_71248
comment: note massive inconsistencies between GO, MA, wikipedia
subset: uberon_slim
synonym: "trigeminal nuclei" EXACT PLURAL [FMA:71248]
synonym: "trigeminal nucleus" EXACT [FMA:71248]
synonym: "trigeminal V nucleus" EXACT [MA:0001028]
xref: BTO:0001074
xref: FMA:71248
xref: GAID:604
xref: MA:0001028
xref: ncithesaurus:Trigeminal_Nucleus
xref: NIF_GrossAnatomy:birnlex_4096
is_a: UBERON:0002020 ! gray matter of neuraxis
relationship: part_of UBERON:0001645 ! trigeminal nerve
[Term]
id: UBERON:0002926
name: gustatory epithelium
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4099-FMA_62412
xref: FMA:62412
xref: NIF_GrossAnatomy:birnlex_4099
is_a: UBERON:0000488 ! atypical epithelium
[Term]
id: UBERON:0002927
name: circumvallate papilla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4106_2-MA_0001594
def: "The circumvallate papillae (or vallate papillae) are of large size (dome-shaped structures), and vary from eight to twelve in number. They are situated on the dorsum of the tongue immediately in front of the foramen cecum and sulcus terminalis, forming a row on either side; the two rows run backward and medially, and meet in the midline, like the limbs of the letter V inverted. Each consists of a projection of mucous membrane from 1 to 2 mm. wide, attached to the bottom of a circular depression of the mucous membrane (some text referred to as moats); the margin of the depression is elevated to form a wall (vallum), and between this and the papilla is a circular sulcus termed the fossa. The papilla is shaped like a truncated cone, the smaller end being directed downward and attached to the tongue, the broader part or base projecting a little above the surface of the tongue and being studded with numerous small secondary papillæ and covered by stratified squamous epithelium. Ducts of lingual salivary glands, referred to as Von Ebner's glands empty serous secretion into the base of the circular depression (moats). The function of the secretion is presumed to flush materials from the base of circular depression to ensure that taste buds can respond to changing stimuli rapidly. The circumvallate papillae get SVA innervation from cranial nerve IX, the glossopharyngeal nerve, even though they are anterior to the sulcus terminalis. The rest of the anterior 2/3s of the tongue gets SVA innervation from the chorda tympani of cranial nerve VII, distributed with the lingual nerve of cranial nerve V. [WP,unvetted]." [Wikipedia:Circumvallate_papilla]
subset: uberon_slim
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6c/Gray1015.png/200px-Gray1015.png
xref: MA:0001594
xref: ncithesaurus:Circumvallate_Papilla
xref: NIF_GrossAnatomy:birnlex_4106_2
is_a: UBERON:0001726 ! papilla of tongue
[Term]
id: UBERON:0002928
name: dentate gyrus polymorphic layer
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4128-MA_0002864
xref: MA:0002864
xref: NIF_GrossAnatomy:birnlex_4128
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002304 ! layer of dentate gyrus
[Term]
id: UBERON:0002929
name: dentate gyrus pyramidal layer
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4129-MA_0000948
xref: MA:0000948
is_a: UBERON:0002304 ! layer of dentate gyrus
[Term]
id: UBERON:0002930
name: tectopontine tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_701-FMA_72505
synonym: "tectopontine fibers" EXACT [FMA:72505]
synonym: "tectopontine fibres" EXACT [FMA:72505]
xref: FMA:72505
xref: NIF_GrossAnatomy:birnlex_701
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002931
name: dorsal septal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_704-FMA_61877
xref: FMA:61877
xref: NIF_GrossAnatomy:birnlex_704
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002932
name: trapezoid body
alt_id: UBERON:NIF_GrossAnatomy_birnlex_707-FMA_72487
def: "The trapezoid body is part of the acoustic pathway. It is a bundle of fibers and cells in the pontine tegmentum. It consists of fibers arising from the ventral cochlear nucleus. A collection of nerve cells inside forms a trapezoid nucleus. The superior olivary nucleus is situated on the dorsal surface of the trapezoid body. Most nerve fibers pass directly from the superior olivary nuclei to the inferior colliculus. Axons leaving the ventral cochlear nucleus (VCN) form a broad pathway that crosses under the brain stem in the trapezoid body. A thin pathway, the intermediate acoustic stria, also leaves the VCN, merging with the trapezoid body close to the superior olivary complex, where many of its axons synapse. Axons leaving the dorsal cochlear nucleus (DCN) form the dorsal acoustic stria, which reaches primarily the contralateral dorsal nucleus of the lateral lemniscus and the central nucleus of the inferior colliculus. [WP,unvetted]." [Wikipedia:Trapezoid_body]
subset: uberon_slim
xref: FMA:72487
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bb/Gray760.png/200px-Gray760.png
xref: NIF_GrossAnatomy:birnlex_707
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002933
name: nucleus of anterior commissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_712-FMA_61883
synonym: "anterior commissure nucleus" EXACT [FMA:61883]
synonym: "bed nucleus of anterior commissure" EXACT [FMA:61883]
synonym: "nucleus of commissura anterior" EXACT [FMA:61883]
xref: FMA:61883
xref: NIF_GrossAnatomy:birnlex_712
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002934
name: ventral oculomotor nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_713-FMA_72422
synonym: "ventral oculomotor cell column" EXACT [FMA:72422]
xref: FMA:72422
xref: NIF_GrossAnatomy:birnlex_713
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002935
name: magnocellular part of ventral anterior nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_716-FMA_62192
synonym: "magnocellular division of ventral anterior nucleus of thalamus" EXACT [FMA:62192]
synonym: "ventral anterior nucleus, magnocellular part" EXACT [FMA:62192]
synonym: "ventral anterior nucleus, pars magnocellularis" EXACT [FMA:62192]
synonym: "ventral anterior thalamic nucleus, magnocellular part" EXACT [FMA:62192]
xref: FMA:62192
xref: NIF_GrossAnatomy:birnlex_716
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002936
name: magnocellular part of red nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_720-FMA_72431
synonym: "paleoruber" EXACT [FMA:72431]
synonym: "red nucleus, magnocellular part" EXACT [FMA:72431]
xref: FMA:72431
xref: NIF_GrossAnatomy:birnlex_720
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001947 ! red nucleus
[Term]
id: UBERON:0002937
name: parvicellular part of ventral anterior nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_722-FMA_62191
synonym: "ventral anterior nucleus, pars parvicellularis" EXACT [FMA:62191]
synonym: "ventral anterior thalamic nucleus, parvicellular part" EXACT [FMA:62191]
synonym: "ventralis anterior (jones)" EXACT []
xref: FMA:62191
xref: NIF_GrossAnatomy:birnlex_722
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002938
name: parvocellular part of red nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_725-FMA_72430
synonym: "neoruber" EXACT [FMA:72430]
synonym: "red nucleus, parvocellular part" EXACT [FMA:72430]
xref: FMA:72430
xref: NIF_GrossAnatomy:birnlex_725
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001947 ! red nucleus
[Term]
id: UBERON:0002939
name: ventral posteroinferior nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_728-FMA_62199
synonym: "ventral posterior inferior nucleus" EXACT [FMA:62199]
synonym: "ventral posterior inferior nucleus of thalamus" EXACT [FMA:62199]
synonym: "ventral posterior inferior thalamic nucleus" EXACT [FMA:62199]
xref: FMA:62199
xref: NIF_GrossAnatomy:birnlex_728
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002940
name: anterior column of fornix
alt_id: UBERON:NIF_GrossAnatomy_birnlex_731-FMA_61966
synonym: "anterior crus of fornix" EXACT [FMA:61966]
synonym: "anterior pillar of fornix" EXACT [FMA:61966]
xref: FMA:61966
xref: NIF_GrossAnatomy:birnlex_731
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002941
name: capsule of red nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_732-FMA_72450
synonym: "red nuclear capsule" EXACT [FMA:72450]
xref: FMA:72450
xref: NIF_GrossAnatomy:birnlex_732
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001947 ! red nucleus
[Term]
id: UBERON:0002942
name: ventral posterolateral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_737-FMA_62200
def: "The ventral posterolateral nucleus (VPL) is a nucleus of the thalamus. Together with the ventral posteromedial nucleus (VPM) it constitutes the ventral posterior nucleus. [WP,unvetted]." [Wikipedia:Ventral_posterolateral_nucleus]
subset: uberon_slim
synonym: "posterolateral ventral nucleus of thalamus" EXACT [FMA:62200]
synonym: "ventral posterolateral nucleus of thalamus" EXACT [FMA:62200]
synonym: "ventral posterolateral thalamic nucleus" EXACT [FMA:62200]
xref: FMA:62200
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: NIF_GrossAnatomy:birnlex_737
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002943
name: lingual gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_740-FMA_61904
def: "The lingual gyrus of the occipital lobe lies between the calcarine sulcus and the posterior part of the collateral sulcus; behind, it reaches the occipital pole; in front, it is continued on to the tentorial surface of the temporal lobe, and joins the hippocampal gyrus. The lingual gyrus is so-named because it resembles the tongue in shape. This region is believed to play an important role in dreaming and vision, especially in recognizing words, regardless of size, font, etc. Shunt [WP,unvetted]." [Wikipedia:Lingual_gyrus]
subset: uberon_slim
synonym: "lingula of cerebral hemisphere" EXACT [FMA:61904]
synonym: "medial occipitotemporal gyrus" EXACT [FMA:61904]
synonym: "medial occipitotemporal gyrus-2" EXACT [FMA:61904]
xref: FMA:61904
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a1/Gray727_lingual_gyrus.png/200px-Gray727_lingual_gyrus.png
xref: NIF_GrossAnatomy:birnlex_740
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002021 ! occipital lobe
[Term]
id: UBERON:0002944
name: spinothalamic tract of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_741-FMA_72644
def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the spinal cord towards target cells in the thalamus. This axonal process is a member of those that make up the spinothalamic tract, one of the major routes of nociceptive signaling[GO]." [Wikipedia:Spinothalamic_tract]
subset: uberon_slim
synonym: "spinothalamic tract" EXACT [FMA:72644]
xref: FMA:72644
xref: GAID:703
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png
xref: NIF_GrossAnatomy:birnlex_741
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002945
name: ventral posteromedial nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_743-FMA_62202
def: "The ventral posteromedial nucleus is a nucleus of the thalamus. [WP,unvetted]." [Wikipedia:Ventral_posteromedial_nucleus]
subset: uberon_slim
synonym: "arcuate hypothalamic nucleus of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "arcuate hypothalamic nucleus of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "arcuate hypothalamic nucleus of thalamus" EXACT [OBOL:automatic]
synonym: "arcuate nucleus of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "arcuate nucleus of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "arcuate nucleus of hypothalamus of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "arcuate nucleus of hypothalamus of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "arcuate nucleus of hypothalamus of thalamus" EXACT [OBOL:automatic]
synonym: "arcuate nucleus of thalamus" EXACT [FMA:62202]
synonym: "arcuate nucleus-2 of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "arcuate nucleus-2 of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "arcuate nucleus-2 of thalamus" EXACT [OBOL:automatic]
synonym: "arcuate nucleus-3" EXACT [FMA:62202]
synonym: "arcuate periventricular nucleus of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "arcuate periventricular nucleus of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "arcuate periventricular nucleus of thalamus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) arcuate hypothalamic nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) arcuate nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) arcuate nucleus of hypothalamus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) arcuate nucleus-2" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) arcuate periventricular nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) infundibular hypothalamic nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) infundibular nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus (anthoney) infundibular periventricular nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus arcuate hypothalamic nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus arcuate nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus arcuate nucleus of hypothalamus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus arcuate nucleus-2" EXACT [OBOL:automatic]
synonym: "dorsal thalamus arcuate periventricular nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus infundibular hypothalamic nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus infundibular nucleus" EXACT [OBOL:automatic]
synonym: "dorsal thalamus infundibular periventricular nucleus" EXACT [OBOL:automatic]
synonym: "infundibular hypothalamic nucleus of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "infundibular hypothalamic nucleus of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "infundibular hypothalamic nucleus of thalamus" EXACT [OBOL:automatic]
synonym: "infundibular nucleus of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "infundibular nucleus of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "infundibular nucleus of thalamus" EXACT [OBOL:automatic]
synonym: "infundibular periventricular nucleus of dorsal thalamus" EXACT [OBOL:automatic]
synonym: "infundibular periventricular nucleus of dorsal thalamus (anthoney)" EXACT [OBOL:automatic]
synonym: "infundibular periventricular nucleus of thalamus" EXACT [OBOL:automatic]
synonym: "posteromedial ventral nucleus of thalamus" EXACT [FMA:62202]
synonym: "semilunar nucleus" EXACT [FMA:62202]
synonym: "thalamic gustatory nucleus" EXACT [FMA:62202]
synonym: "thalamus arcuate hypothalamic nucleus" EXACT [OBOL:automatic]
synonym: "thalamus arcuate nucleus" EXACT [OBOL:automatic]
synonym: "thalamus arcuate nucleus of hypothalamus" EXACT [OBOL:automatic]
synonym: "thalamus arcuate nucleus-2" EXACT [OBOL:automatic]
synonym: "thalamus arcuate periventricular nucleus" EXACT [OBOL:automatic]
synonym: "thalamus infundibular hypothalamic nucleus" EXACT [OBOL:automatic]
synonym: "thalamus infundibular nucleus" EXACT [OBOL:automatic]
synonym: "thalamus infundibular periventricular nucleus" EXACT [OBOL:automatic]
synonym: "ventral posterior medial nucleus" EXACT [FMA:62202]
synonym: "ventral posteromedial nucleus of thalamus" EXACT [FMA:62202]
xref: FMA:62202
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/ThalamicNuclei.png/200px-ThalamicNuclei.png
xref: NIF_GrossAnatomy:birnlex_743
is_a: UBERON:0001932 ! implied link automatically realized ! arcuate nucleus of hypothalamus
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897
intersection_of: UBERON:0001932 ! arcuate nucleus of hypothalamus
intersection_of: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002946
name: regional part of cerebellum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_748-FMA_256150
def: "A regional part of brain that is part of a cerebellum [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of cerebellum" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of epencephalon-1" EXACT [OBOL:automatic]
synonym: "biological structure of brain of cerebellum" EXACT [OBOL:automatic]
synonym: "biological structure of brain of epencephalon-1" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of cerebellum" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of epencephalon-1" EXACT [OBOL:automatic]
synonym: "brain biological structure of cerebellum" EXACT [OBOL:automatic]
synonym: "brain biological structure of epencephalon-1" EXACT [OBOL:automatic]
synonym: "cerebellum anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "cerebellum biological structure of brain" EXACT [OBOL:automatic]
synonym: "cerebellum brain anatomical structure" EXACT [OBOL:automatic]
synonym: "cerebellum brain biological structure" EXACT [OBOL:automatic]
synonym: "cerebellum neuraxis segment" EXACT [OBOL:automatic]
synonym: "cerebellum regional part of brain" EXACT [OBOL:automatic]
synonym: "cerebellum segment of brain" EXACT [OBOL:automatic]
synonym: "epencephalon-1 anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "epencephalon-1 biological structure of brain" EXACT [OBOL:automatic]
synonym: "epencephalon-1 brain anatomical structure" EXACT [OBOL:automatic]
synonym: "epencephalon-1 brain biological structure" EXACT [OBOL:automatic]
synonym: "epencephalon-1 neuraxis segment" EXACT [OBOL:automatic]
synonym: "epencephalon-1 regional part of brain" EXACT [OBOL:automatic]
synonym: "epencephalon-1 segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of cerebellum" EXACT [OBOL:automatic]
synonym: "neuraxis segment of epencephalon-1" EXACT [OBOL:automatic]
synonym: "regional part of brain of cerebellum" EXACT [OBOL:automatic]
synonym: "regional part of brain of epencephalon-1" EXACT [OBOL:automatic]
synonym: "segment of brain of cerebellum" EXACT [OBOL:automatic]
synonym: "segment of brain of epencephalon-1" EXACT [OBOL:automatic]
synonym: "segment of cerebellum" EXACT [NIF_GrossAnatomy:birnlex_748]
xref: FMA:256150
xref: NIF_GrossAnatomy:birnlex_748
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002680 ! regional part of metencephalon
relationship: part_of UBERON:0002037
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002947
name: frontal operculum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_751-FMA_74886
xref: FMA:74886
xref: NIF_GrossAnatomy:birnlex_751
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002948
name: superior occipital gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_758-FMA_61901
synonym: "gyrus occipitalis primus" EXACT [FMA:61901]
xref: FMA:61901
xref: NIF_GrossAnatomy:birnlex_758
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002021 ! occipital lobe
[Term]
id: UBERON:0002949
name: tectospinal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_759-FMA_72620
def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the superior colliculus of the midbrain towards target cells in the ventral spinal cord[GO]." [Wikipedia:Tectospinal_tract]
subset: uberon_slim
synonym: "held's bundle" EXACT [FMA:72620]
synonym: "tectospinal pathway" EXACT [FMA:72620]
xref: FMA:72620
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/be/Gray670.png/200px-Gray670.png
xref: NIF_GrossAnatomy:birnlex_759
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002950
name: regional part of midbrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_763-FMA_61997
def: "A regional part of brain that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of midbrain" EXACT [OBOL:automatic]
synonym: "biological structure of brain of midbrain" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of midbrain" EXACT [OBOL:automatic]
synonym: "brain biological structure of midbrain" EXACT [OBOL:automatic]
synonym: "midbrain anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "midbrain biological structure of brain" EXACT [OBOL:automatic]
synonym: "midbrain brain anatomical structure" EXACT [OBOL:automatic]
synonym: "midbrain brain biological structure" EXACT [OBOL:automatic]
synonym: "midbrain neuraxis segment" EXACT [OBOL:automatic]
synonym: "midbrain regional part of brain" EXACT [OBOL:automatic]
synonym: "midbrain segment" EXACT [FMA:61997]
synonym: "midbrain segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of midbrain" EXACT [OBOL:automatic]
synonym: "regional part of brain of midbrain" EXACT [OBOL:automatic]
synonym: "segment of brain of midbrain" EXACT [OBOL:automatic]
synonym: "segment of midbrain" EXACT [NIF_GrossAnatomy:birnlex_763]
xref: FMA:61997
xref: NIF_GrossAnatomy:birnlex_763
is_a: UBERON:0002616 ! regional part of brain
relationship: part_of UBERON:0001891
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0002951
name: regional part of intermediate hypothalamic region
alt_id: UBERON:NIF_GrossAnatomy_birnlex_767-FMA_62310
def: "A regional part of brain that is part of a intermediate hypothalamic region [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of intermediate hypothalamic area" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of intermediate hypothalamic region" EXACT [OBOL:automatic]
synonym: "biological structure of brain of intermediate hypothalamic area" EXACT [OBOL:automatic]
synonym: "biological structure of brain of intermediate hypothalamic region" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of intermediate hypothalamic area" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of intermediate hypothalamic region" EXACT [OBOL:automatic]
synonym: "brain biological structure of intermediate hypothalamic area" EXACT [OBOL:automatic]
synonym: "brain biological structure of intermediate hypothalamic region" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic area anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic area biological structure of brain" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic area brain anatomical structure" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic area brain biological structure" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic area neuraxis segment" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic area regional part of brain" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic area segment of brain" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic region anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic region biological structure of brain" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic region brain anatomical structure" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic region brain biological structure" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic region neuraxis segment" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic region regional part of brain" EXACT [OBOL:automatic]
synonym: "intermediate hypothalamic region segment" EXACT [FMA:62310]
synonym: "intermediate hypothalamic region segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of intermediate hypothalamic area" EXACT [OBOL:automatic]
synonym: "neuraxis segment of intermediate hypothalamic region" EXACT [OBOL:automatic]
synonym: "regional part of brain of intermediate hypothalamic area" EXACT [OBOL:automatic]
synonym: "regional part of brain of intermediate hypothalamic region" EXACT [OBOL:automatic]
synonym: "segment of brain of intermediate hypothalamic area" EXACT [OBOL:automatic]
synonym: "segment of brain of intermediate hypothalamic region" EXACT [OBOL:automatic]
synonym: "segment of intermediate hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_767]
xref: FMA:62310
xref: NIF_GrossAnatomy:birnlex_767
is_a: UBERON:0003048 ! regional part of hypothalamus
relationship: part_of UBERON:0002555
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002555 ! intermediate hypothalamic region
[Term]
id: UBERON:0002952
name: intermediate acoustic stria
alt_id: UBERON:NIF_GrossAnatomy_birnlex_768-FMA_72497
synonym: "commissure of held" EXACT []
synonym: "intermediate acoustic stria of held" EXACT []
xref: FMA:72497
xref: NIF_GrossAnatomy:birnlex_768
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002953
name: lateral lemniscus
alt_id: UBERON:0003042
alt_id: UBERON:NIF_GrossAnatomy_birnlex_774-FMA_72502
alt_id: UBERON:NIF_GrossAnatomy_birnlex_976-FMA_72502
def: "The lateral lemniscus is a tract of axons in the brainstem that carries information about sound from the cochlear nucleus to various brainstem nuclei and ultimately the contralateral inferior colliculus of the midbrain. Three distinct, primarily inhibitory, cellular groups are located interspersed within these fibers, and are thus named the nuclei of the lateral lemniscus. [WP,unvetted]." [Wikipedia:Lateral_lemniscus]
subset: uberon_slim
synonym: "lateral fillet" EXACT [FMA:72502]
xref: FMA:72502
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Lateral_lemniscus.PNG/200px-Lateral_lemniscus.PNG
xref: NIF_GrossAnatomy:birnlex_774
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002954
name: dorsal hypothalamic area
alt_id: UBERON:NIF_GrossAnatomy_birnlex_777-FMA_62339
xref: FMA:62339
xref: NIF_GrossAnatomy:birnlex_777
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002955
name: rhomboidal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_778-FMA_62154
synonym: "rhomboid nucleus" EXACT [FMA:62154]
synonym: "rhomboid thalamic nucleus" EXACT [FMA:62154]
xref: BTO:0002458
xref: FMA:62154
xref: NIF_GrossAnatomy:birnlex_778
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002956
name: granular layer of cerebellar cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_779-FMA_83140
def: "The granular layer is the innermost layer of the cerebellar cortex. This layer contains densely packed small neurons, mostly granule cells. Some Golgi cells are found at the outer border. Granule neurons send parallel fibers to the upper molecular layer, where they synapse with Purkinje cell dendrites. Mossy fibers from the pontine nuclei in the white matter synapse with granule cell axons, Golgi cell axons and unipolar brush interneuron axons at cerebellar glomeruli in the granule cell layer." [GO:0021681]
synonym: "cerebellar granular layer" EXACT [GO:0021681]
synonym: "cerebellar granule cell layer" EXACT []
synonym: "cerebellar granule layer" EXACT []
synonym: "cerebellum granule cell layer" EXACT [MA:0000993]
synonym: "cerebellum granule layer" EXACT []
xref: FMA:83140
xref: MA:0000993
xref: NIF_GrossAnatomy:birnlex_779
is_a: UBERON:0004130 ! cerebellar layer
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0002957
name: caudal central oculomotor nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_780-FMA_72426
synonym: "caudal central nucleus" EXACT [FMA:72426]
synonym: "caudal central nucleus of oculomotor nerve" EXACT [FMA:72426]
xref: FMA:72426
xref: NIF_GrossAnatomy:birnlex_780
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002958
name: medial lemniscus of pons
alt_id: UBERON:NIF_GrossAnatomy_birnlex_781-FMA_72503
def: "A medial lemniscus that is part of a pons [Obol]." [OBOL:automatic]
synonym: "medial lemniscus of pons of varolius" EXACT [OBOL:automatic]
synonym: "pons medial lemniscus" EXACT [OBOL:automatic]
synonym: "pons of varolius medial lemniscus" EXACT [OBOL:automatic]
xref: FMA:72503
xref: NIF_GrossAnatomy:birnlex_781
is_a: UBERON:0003002 ! medial lemniscus
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0000988
intersection_of: UBERON:0003002 ! medial lemniscus
intersection_of: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002959
name: subfascicular nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_783-FMA_62155
xref: FMA:62155
xref: NIF_GrossAnatomy:birnlex_783
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002960
name: central oculomotor nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_786-FMA_72425
synonym: "central nucleus of perlia" EXACT []
synonym: "nucleus of perlia" EXACT []
synonym: "spitzka's nucleus" EXACT [FMA:72425]
xref: FMA:72425
xref: NIF_GrossAnatomy:birnlex_786
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002961
name: archicortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_787-FMA_62424
def: "A portion of the cerebral cortex that, with the paleocortex, develops in association with the olfactory system, and which is phylogenetically older than the neocortex and lacks its layered structure. The embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus in mature mammals. Being part of the limbic system, it has functions related to emotions and formation of memory. Signals being sent from the limbic lobe to the hippocampal formations can go via the archicortex as an intermediate." [Wikipedia:Archicortex]
subset: uberon_slim
synonym: "archipallium" EXACT [FMA:62424]
xref: FMA:62424
xref: NIF_GrossAnatomy:birnlex_787
is_a: UBERON:0002619 ! regional part of cerebral cortex
[Term]
id: UBERON:0002963
name: caudal pontine reticular nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_792-FMA_72469
def: "The caudal pontine reticular nucleus is composed of gigantocellular neurons. In rabbits and cats it is exclusively giant cells, however in humans there are normally sized cells as well. The pontis caudalis is rostral to the gigantocellular nucleus and is located in the caudal pons, as the name would indicate. The pontis caudalis has been known to mediate head movement, in concert with the nucleus gigantocellularis and the superior colliculus. The neurons in the dorsal half of this nuclei fire rhythmically during mastication, and in an anesthetized animal it is possible to induce mastication via electrical stimulation of the PC or adjacent areas of the gigantocellular nucleus. The pontis caudalis is also thought to play a role in the grinding of teeth during sleep. [WP,unvetted]." [Wikipedia:Caudal_pontine_reticular_nucleus]
subset: uberon_slim
synonym: "pontine reticular nucleus, caudal part" EXACT [FMA:72469]
xref: FMA:72469
xref: NIF_GrossAnatomy:birnlex_792
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002964
name: dorsal oculomotor nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_793-FMA_62442
synonym: "dorsal oculomotor cell column" EXACT [FMA:62442]
xref: FMA:62442
xref: NIF_GrossAnatomy:birnlex_793
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002965
name: rostral intralaminar nuclei
alt_id: UBERON:NIF_GrossAnatomy_birnlex_794-FMA_62164
synonym: "rostral intralaminar nuclei" EXACT [FMA:62164]
xref: FMA:62164
xref: NIF_GrossAnatomy:birnlex_794
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002966
name: regional part of midbrain tectum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_795-FMA_62398
def: "A regional part of brain that is part of a midbrain tectum [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of midbrain tectum" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of neuraxis tectum" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of tectum" EXACT [OBOL:automatic]
synonym: "biological structure of brain of midbrain tectum" EXACT [OBOL:automatic]
synonym: "biological structure of brain of neuraxis tectum" EXACT [OBOL:automatic]
synonym: "biological structure of brain of tectum" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of midbrain tectum" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of neuraxis tectum" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of tectum" EXACT [OBOL:automatic]
synonym: "brain biological structure of midbrain tectum" EXACT [OBOL:automatic]
synonym: "brain biological structure of neuraxis tectum" EXACT [OBOL:automatic]
synonym: "brain biological structure of tectum" EXACT [OBOL:automatic]
synonym: "midbrain tectum anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "midbrain tectum biological structure of brain" EXACT [OBOL:automatic]
synonym: "midbrain tectum brain anatomical structure" EXACT [OBOL:automatic]
synonym: "midbrain tectum brain biological structure" EXACT [OBOL:automatic]
synonym: "midbrain tectum neuraxis segment" EXACT [OBOL:automatic]
synonym: "midbrain tectum regional part of brain" EXACT [OBOL:automatic]
synonym: "midbrain tectum segment" EXACT [FMA:62398]
synonym: "midbrain tectum segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of midbrain tectum" EXACT [OBOL:automatic]
synonym: "neuraxis segment of neuraxis tectum" EXACT [OBOL:automatic]
synonym: "neuraxis segment of tectum" EXACT [OBOL:automatic]
synonym: "neuraxis tectum anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "neuraxis tectum biological structure of brain" EXACT [OBOL:automatic]
synonym: "neuraxis tectum brain anatomical structure" EXACT [OBOL:automatic]
synonym: "neuraxis tectum brain biological structure" EXACT [OBOL:automatic]
synonym: "neuraxis tectum neuraxis segment" EXACT [OBOL:automatic]
synonym: "neuraxis tectum regional part of brain" EXACT [OBOL:automatic]
synonym: "neuraxis tectum segment of brain" EXACT [OBOL:automatic]
synonym: "regional part of brain of midbrain tectum" EXACT [OBOL:automatic]
synonym: "regional part of brain of neuraxis tectum" EXACT [OBOL:automatic]
synonym: "regional part of brain of tectum" EXACT [OBOL:automatic]
synonym: "segment of brain of midbrain tectum" EXACT [OBOL:automatic]
synonym: "segment of brain of neuraxis tectum" EXACT [OBOL:automatic]
synonym: "segment of brain of tectum" EXACT [OBOL:automatic]
synonym: "segment of midbrain tectum" EXACT [NIF_GrossAnatomy:birnlex_795]
synonym: "tectum anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "tectum biological structure of brain" EXACT [OBOL:automatic]
synonym: "tectum brain anatomical structure" EXACT [OBOL:automatic]
synonym: "tectum brain biological structure" EXACT [OBOL:automatic]
synonym: "tectum neuraxis segment" EXACT [OBOL:automatic]
synonym: "tectum regional part of brain" EXACT [OBOL:automatic]
synonym: "tectum segment of brain" EXACT [OBOL:automatic]
xref: FMA:62398
xref: NIF_GrossAnatomy:birnlex_795
is_a: UBERON:0002616 ! regional part of brain
relationship: part_of UBERON:0002314
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002314 ! midbrain tectum
[Term]
id: UBERON:0002967
name: cingulate gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_798-FMA_62434
def: "A gyrus in the medial part of the brain. It partially wraps around the corpus callosum and is limited above by the cingulate sulcus. The cortical part of the cingulate gyrus is referred to as cingulate cortex.[Wikipedia]. The cingulate gyrus receives inputs from the anterior nucleus of the thalamus and the neocortex, as well as from somatosensory areas of the cerebral cortex. It projects to the entorhinal cortex via the cingulum. It functions as an integral part of the limbic system, which is involved with emotion formation and processing, learning, and memory. Also, executive control needed to suppress inappropriate unconscious priming is known to involve the anterior cingulate gyrus. It is also involved in respiratory control." [Wikipedia:Cingulate_gyrus]
subset: uberon_slim
synonym: "cingulate area" EXACT [FMA:62434]
synonym: "cingulate region" EXACT [FMA:62434]
synonym: "falciform lobe" EXACT [FMA:62434]
synonym: "upper limbic gyrus" EXACT [FMA:62434]
xref: BTO:0003976
xref: FMA:62434
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Gray727_cingulate_gyrus.png/200px-Gray727_cingulate_gyrus.png
xref: NIF_GrossAnatomy:birnlex_798
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0000349 ! limbic system
[Term]
id: UBERON:0002968
name: central gray substance of pons
alt_id: UBERON:NIF_GrossAnatomy_birnlex_799-FMA_72470
synonym: "central gray of pons" EXACT [FMA:72470]
synonym: "pontine central gray" EXACT [FMA:72470]
xref: FMA:72470
xref: NIF_GrossAnatomy:birnlex_799
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002969
name: inferior temporal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_800-FMA_83784
synonym: "inferior temporal sulcus-1" EXACT [FMA:83784]
synonym: "middle temporal sulcus (szikla)" EXACT []
synonym: "second temporal sulcus" EXACT [FMA:83784]
synonym: "sulcus t2" EXACT [FMA:83784]
xref: FMA:83784
xref: ncithesaurus:Inferior_Temporal_Sulcus
xref: NIF_GrossAnatomy:birnlex_800
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002970
name: intermediate oculomotor nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_803-FMA_72420
synonym: "intermediate oculomotor cell column" EXACT [FMA:72420]
xref: FMA:72420
xref: NIF_GrossAnatomy:birnlex_803
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002971
name: periolivary nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_804-MA_0002757
xref: MA:0002757
xref: NIF_GrossAnatomy:birnlex_804
is_a: UBERON:0002680 ! regional part of metencephalon
relationship: part_of UBERON:0002128 ! superior olivary complex
[Term]
id: UBERON:0002972
name: centromedian nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_805-FMA_62165
def: "In the anatomy of the brain, the centromedian nucleus, also known as the centrum medianum, (CM or Cm-Pf) is a part of the intralaminar nucleus (ILN) of the thalamus. There are two centromedian nuclei arranged bilaterally. It contains about 2000 neurons per cubic millimetre and has a volume of about 310 cubic millimetres with 664,000 neurons in total. [WP,unvetted]." [Wikipedia:Centromedian_nucleus]
subset: uberon_slim
synonym: "central magnocellular nucleus of thalamus" EXACT [FMA:62165]
synonym: "central nucleus-1" EXACT [FMA:62165]
synonym: "centre median nucleus" EXACT [FMA:62165]
synonym: "centromedian nucleus of thalamus" EXACT [FMA:62165]
synonym: "centromedian thalamic nucleus" EXACT [FMA:62165]
synonym: "noyau centre median of luys" EXACT []
xref: FMA:62165
xref: NIF_GrossAnatomy:birnlex_805
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002973
name: parahippocampal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_807-FMA_61918
def: "a grey matter cortical region of the brain that surrounds the hippocampus. This region plays an important role in memory encoding and retrieval. The anterior part of the gyrus includes the perirhinal and entorhinal cortices. The term parahippocampal cortex is used to refer to an area that encompasses both the posterior portion of the parahippocampal gyrus and the medial portion of the fusiform gyrus.[Wikipedia]." [Wikipedia:Parahippocampal_gyrus]
subset: uberon_slim
synonym: "hippocampal gyrus" EXACT [FMA:61918]
xref: FMA:61918
xref: GAID:634
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Human_brainstem_anterior_view_2_description.JPG/200px-Human_brainstem_anterior_view_2_description.JPG
xref: ncithesaurus:Parahippocampal_Gyrus
xref: NIF_GrossAnatomy:birnlex_807
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000349 ! limbic system
relationship: part_of UBERON:0001871 ! temporal lobe
relationship: surrounds UBERON:0001954 ! hippocampus
[Term]
id: UBERON:0002974
name: molecular layer of cerebellar cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_810-FMA_83897
def: "The molecular layer is the outermost layer of the cerebellar cortex. It contains the parallel fibers of the granule cells, interneurons such as stellate and basket cells, and the dendrites of the underlying Purkinje cells" [GO:0021679]
synonym: "cerebellar molecular layer" EXACT [GO:0021679]
synonym: "cerebellum molecular cell layer" EXACT []
synonym: "cerebellum molecular layer" EXACT []
xref: FMA:83897
xref: MA:0000996
xref: NIF_GrossAnatomy:birnlex_810
is_a: UBERON:0004130 ! cerebellar layer
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0002975
name: medial oculomotor nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_813-FMA_72421
synonym: "medial oculomotor cell column" EXACT [FMA:72421]
xref: FMA:72421
xref: NIF_GrossAnatomy:birnlex_813
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002976
name: preolivary nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_814-FMA_72474
synonym: "preolivary nuclei" EXACT [FMA:72474]
xref: FMA:72474
xref: NIF_GrossAnatomy:birnlex_814
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0002128 ! superior olivary complex
[Term]
id: UBERON:0002977
name: triangular septal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_816-FMA_61880
synonym: "triangular nucleus of septum" EXACT [FMA:61880]
xref: FMA:61880
xref: NIF_GrossAnatomy:birnlex_816
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002978
name: oral part of ventral lateral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_817-FMA_62193
synonym: "ventral anterior nucleus, pars densicellularis" EXACT [FMA:62193]
synonym: "ventral lateral anterior nucleus" EXACT [FMA:62193]
synonym: "ventral lateral nucleus, oral part" EXACT [FMA:62193]
synonym: "ventral lateral thalamic nucleus, oral part" EXACT [FMA:62193]
xref: FMA:62193
xref: NIF_GrossAnatomy:birnlex_817
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001925 ! ventral lateral nucleus
[Term]
id: UBERON:0002979
name: Purkinje cell layer of cerebellar cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_818-FMA_83896
def: "The Purkinje cell layer lies just underneath the molecular layer of the cerebellar cortex. It contains the neuronal cell bodies of the Purkinje cells that are arranged side by side in a single layer. Candelabrum interneurons are vertically oriented between the Purkinje cells. Purkinje neurons are inhibitory and provide the output of the cerebellar cortex through axons that project into the white matter. Extensive dendritic trees from the Purkinje cells extend upward in a single plane into the molecular layer where they synapse with parallel fibers of granule cells." [GO:0021680]
synonym: "cerebellar Purkinje cell layer" EXACT [FMA:83896, GO:0021694]
synonym: "cerebellum Purkinje cell layer" EXACT []
synonym: "cerebellum Purkinje layer" EXACT []
synonym: "Purkinje cell layer" EXACT [FMA:83896]
xref: FMA:83896
xref: MA:0000997
xref: NIF_GrossAnatomy:birnlex_818
is_a: UBERON:0004130 ! cerebellar layer
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0002980
name: opercular part of inferior frontal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_823-FMA_61981
synonym: "opercular portion of inferior frontal gyrus" EXACT [FMA:61981]
synonym: "posterior part of inferior frontal gyrus" EXACT [FMA:61981]
xref: FMA:61981
xref: NIF_GrossAnatomy:birnlex_823
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002981
name: pulvinar
alt_id: UBERON:NIF_GrossAnatomy_birnlex_824-FMA_62178
def: "The pulvinar is the caudal-most nucleus of the thalamus. The pulvinar is usually grouped as one of the lateral thalamic nuclei. [WP,unvetted]." [Wikipedia:Pulvinar]
subset: uberon_slim
synonym: "pulvinar nuclei" EXACT [FMA:62178]
synonym: "pulvinar nucleus" EXACT [FMA:62178]
xref: FMA:62178
xref: GAID:662
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Gray719.png/200px-Gray719.png
xref: NIF_GrossAnatomy:birnlex_824
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002982
name: inferior pulvinar nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_830-FMA_62183
xref: FMA:62183
xref: NIF_GrossAnatomy:birnlex_830
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002983
name: lateral posterior nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_835-FMA_62177
synonym: "lateral posterior nucleus of thalamus" EXACT [FMA:62177]
synonym: "lateral posterior thalamic nucleus" EXACT [FMA:62177]
synonym: "laterodorsal nucleus, caudal part" EXACT [FMA:62177]
synonym: "posterior lateral nucleus of thalamus" EXACT [FMA:62177]
xref: FMA:62177
xref: NIF_GrossAnatomy:birnlex_835
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002984
name: lateral dorsal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_838-FMA_62176
synonym: "lateral dorsal nucleus of thalamus" EXACT [FMA:62176]
synonym: "lateral dorsal thalamic nucleus" EXACT [FMA:62176]
synonym: "laterodorsal nucleus, superficial part" EXACT [FMA:62176]
synonym: "laterodorsal thalamic nucleus" EXACT [FMA:62176]
xref: FMA:62176
xref: NIF_GrossAnatomy:birnlex_838
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002985
name: ventral nucleus of medial geniculate body
alt_id: UBERON:NIF_GrossAnatomy_birnlex_845-FMA_62217
synonym: "medial geniculate complex, ventral part" EXACT [FMA:62217]
synonym: "medial geniculate nucleus, ventral part" EXACT [FMA:62217]
synonym: "ventral nucleus of medial geniculate complex" EXACT [FMA:62217]
synonym: "ventral principal nucleus of medial geniculate body" EXACT [FMA:62217]
xref: BTO:0002671
xref: FMA:62217
xref: NIF_GrossAnatomy:birnlex_845
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001927 ! medial geniculate body
[Term]
id: UBERON:0002986
name: neurofilament
alt_id: UBERON:NIF_GrossAnatomy_birnlex_846-FMA_63859
def: "." [Wikipedia:Neurofilament]
subset: uberon_slim
synonym: "neuronal intermediate filament" EXACT [FMA:63859]
xref: FMA:63859
xref: GO:0005883
xref: ncithesaurus:Neurofilament
xref: NIF_GrossAnatomy:birnlex_846
xref: NIF_Subcellular:sao1316272517
is_a: UBERON:0003000 ! intermediate filament
[Term]
id: UBERON:0002987
name: anterior spinocerebellar tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_848-FMA_72642
def: "The ventral spinocerebellar tract conveys proprioceptive information from the body to the cerebellum. It is part of the somatosensory system and runs in parallel with the dorsal spinocerebellar tract. Both these tracts involve two neurons and end up on the same side of the body. The ventral tract (under L2/L3) gets its proprioceptive/fine touch/vibration information from a first order neuron, with its cell body in a dorsal ganglion. The axon runs via the fila radicularia to the dorsal horn of the grey matter. There it makes a synapse with the dendrites of two neurons: they send their axons bilaterally to the ventral border of the lateral funiculi. The ventral spinocerebellar tract then enters the cerebellum via the superior cerebellar peduncle. This is in contrast with the dorsal spinocerebellar tract (C8 - L2/L3), which only has 1 unilateral axon that has its cell body in the Clarke's nuclei (only at the level of C8 - L2/L3). The fibers of the ventral spinocerebellar tract then eventually enter the cerebellum via the superior cerebellar peduncle. This is one of the few afferent tracts through the superior cerebellar peduncle. Originates from ventral horn at lumbosacral spinal levels. Axons first cross midline in the spinal cord and run in the ventral border of the lateral funiculi. These axons ascend up to the pons where they join the superior cerebellar peduncle to enter the cerebellum. Once in the deep white matter of the cerebellum, the axons recross the midline, give off collaterals to the globose and emboliform nuclei, and terminate in the cortex of the anterior lobe and vermis of the posterior lobe. [WP,unvetted]." [Wikipedia:Anterior_spinocerebellar_tract]
subset: uberon_slim
synonym: "gowers' tract" EXACT [FMA:72642]
synonym: "ventral spinocerebellar tract" EXACT [FMA:72642]
xref: FMA:72642
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Medulla_spinalis_-_tracts_-_English.svg/200px-Medulla_spinalis_-_tracts_-_English.svg.png
xref: NIF_GrossAnatomy:birnlex_848
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
relationship: part_of UBERON:0005413 ! spinocerebellar tract
[Term]
id: UBERON:0002990
name: mammillothalamic tract of hypothalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_855-FMA_62059
xref: FMA:62059
xref: NIF_GrossAnatomy:birnlex_855
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002991
name: supramammillary commissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_859-FMA_62056
synonym: "commissure of forel" EXACT []
synonym: "commissure y" EXACT [FMA:62056]
synonym: "postmammillary decussation" EXACT [FMA:62056]
synonym: "supramammillary decussation" EXACT [FMA:62056]
xref: FMA:62056
xref: NIF_GrossAnatomy:birnlex_859
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002992
name: paratenial nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_860-FMA_62151
synonym: "parataenial nucleus" EXACT [FMA:62151]
synonym: "paratenial thalamic nucleus" EXACT [FMA:62151]
xref: FMA:62151
xref: NIF_GrossAnatomy:birnlex_860
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002993
name: inferior central nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_861-FMA_72466
def: "In the substance of the formatio reticularis are two small nuclei of gray matter. The one near the dorsal aspect of the hilus of the inferior olivary nucleus is called the Sublingual nucleus (inferior central nucleus, nucleus of Roller.) [WP,unvetted]." [Wikipedia:Inferior_central_nucleus]
subset: uberon_slim
synonym: "inferior central nucleus (of roller)" EXACT []
synonym: "inferior central nucleus of raphe" EXACT [FMA:72466]
synonym: "inferior central tegmental nucleus" EXACT [FMA:72466]
xref: FMA:72466
xref: NIF_GrossAnatomy:birnlex_861
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002994
name: nucleus of pretectal area
alt_id: UBERON:NIF_GrossAnatomy_birnlex_864-FMA_72401
synonym: "pretectal area nucleus" EXACT [FMA:72401]
xref: FMA:72401
xref: NIF_GrossAnatomy:birnlex_864
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0002995
name: substantia nigra pars lateralis
alt_id: UBERON:NIF_GrossAnatomy_birnlex_866-MA_0001065
xref: MA:0001065
xref: NIF_GrossAnatomy:birnlex_866
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0002950 ! regional part of midbrain
relationship: part_of UBERON:0002038 ! substantia nigra
[Term]
id: UBERON:0002996
name: nucleus of optic tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_868-FMA_72403
synonym: "large-celled nucleus of optic tract" EXACT [FMA:72403]
synonym: "lentiform nucleus of pretectal area" EXACT [FMA:72403]
synonym: "optic tract nucleus" EXACT [FMA:72403]
xref: FMA:72403
xref: NIF_GrossAnatomy:birnlex_868
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0002997
name: nucleus of medial eminence
alt_id: UBERON:NIF_GrossAnatomy_birnlex_870-FMA_72467
synonym: "medial eminence nucleus" EXACT [FMA:72467]
synonym: "nucleus of eminentia teres" EXACT [FMA:72467]
xref: FMA:72467
xref: NIF_GrossAnatomy:birnlex_870
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0002998
name: inferior frontal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_873-FMA_61860
def: "The inferior frontal gyrus is a gyrus of the frontal lobe of the human brain. Its superior border is the inferior frontal sulcus, its inferior border the lateral fissure, and its posterior border is the inferior precentral sulcus. Above it is the middle frontal gyrus, behind it the precentral gyrus. [WP,unvetted]." [Wikipedia:Inferior_frontal_gyrus]
subset: uberon_slim
synonym: "inferior frontal convolution" EXACT [FMA:61860]
xref: FMA:61860
xref: ncithesaurus:Inferior_Frontal_Convolution
xref: NIF_GrossAnatomy:birnlex_873
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001870 ! frontal cortex
[Term]
id: UBERON:0002999
name: oral pontine reticular nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_875-FMA_72468
def: "The oral pontine reticular nucleus is delineated from its caudal brother, with which it shares its first three names. This nucleus tapers into the lower mesencephalic reticular formation and contains sporadic giant cells. Different populations of the pontis oralis have displayed discharge patterns which coordinate with phasic movements to and from paradoxical sleep. From this information it has been implied that the n.r. pontis oralis is involved in the mediation of changing to and from REM sleep. [WP,unvetted]." [Wikipedia:Oral_pontine_reticular_nucleus]
subset: uberon_slim
synonym: "pontine reticular nucleus, rostral part" EXACT [FMA:72468]
xref: FMA:72468
xref: NIF_GrossAnatomy:birnlex_875
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0003000
name: intermediate filament
alt_id: UBERON:NIF_GrossAnatomy_birnlex_879-FMA_63851
def: "." [Wikipedia:Intermediate_filament]
subset: uberon_slim
xref: FMA:63851
xref: GAID:1079
xref: GO:0005882
xref: ncithesaurus:Intermediate_Filament
xref: NIF_GrossAnatomy:birnlex_879
xref: NIF_Subcellular:sao952483289
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0003001
name: lemniscus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_881-FMA_76742
def: "." [Wikipedia:Lemniscus]
subset: uberon_slim
xref: FMA:76742
xref: NIF_GrossAnatomy:birnlex_881
is_a: UBERON:0002616 ! regional part of brain
[Term]
id: UBERON:0003002
name: medial lemniscus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_887-FMA_83675
def: "The medial lemniscus, also known as Reil's band or Reil's ribbon, is a pathway in the brainstem that carries sensory information from the gracile and cuneate nuclei to the thalamus. [WP,unvetted]." [Wikipedia:Medial_lemniscus]
subset: uberon_slim
xref: FMA:83675
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Gray759.png/200px-Gray759.png
xref: NIF_GrossAnatomy:birnlex_887
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0003003
name: microfilament
alt_id: UBERON:NIF_GrossAnatomy_birnlex_888-FMA_63850
def: "." [Wikipedia:Microfilament]
subset: uberon_slim
synonym: "microfilament" EXACT [FMA:63850]
synonym: "microfilamentum" EXACT [FMA:63850]
xref: FMA:63850
xref: GAID:1080
xref: GO:0005884
xref: NIF_GrossAnatomy:birnlex_888
xref: NIF_Subcellular:sao2006047981
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0003004
name: superior central nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_889-FMA_72465
def: "The median raphe nucleus (or superior central nucleus) is composed of polygonal, fusiform and pyriform neurons and exists rostral to the nucleus raphe pontis. One trait of the NCS is its inhibition by lysergic acid diethylamide and psilocin, two serotonin antagonist hallucinogens. The inactivation of the nucleus centralis superior via LSD produces a dose dependent inactivation in the NCS, but not in the raphe pallidus. The free-moving cats, in which this was discovered, exhibited dose dependent behavioral changes when researched by Dr. Michael Trulson of the neurology department at Texas A&M University Medical School. . [WP,unvetted]." [Wikipedia:Superior_central_nucleus]
subset: uberon_slim
synonym: "cell group b8" EXACT []
synonym: "median nucleus of the raphe" EXACT [FMA:72465]
synonym: "median raphe nucleus" EXACT [FMA:72465]
synonym: "superior central nucleus raphe" EXACT [FMA:72465]
synonym: "superior central tegmental nucleus" EXACT [FMA:72465]
xref: FMA:72465
xref: NIF_GrossAnatomy:birnlex_889
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0003005
name: dorsal longitudinal fasciculus of midbrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_893-FMA_72453
def: "A dorsal longitudinal fasciculus that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "bundle of Schutz of midbrain" EXACT [OBOL:automatic]
synonym: "fasciculus of Schutz of midbrain" EXACT [OBOL:automatic]
synonym: "midbrain bundle of Schutz" EXACT [OBOL:automatic]
synonym: "midbrain dorsal longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "midbrain fasciculus of Schutz" EXACT [OBOL:automatic]
synonym: "midbrain posterior longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "posterior longitudinal fasciculus of midbrain" EXACT [OBOL:automatic]
xref: FMA:72453
xref: NIF_GrossAnatomy:birnlex_893
is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
is_a: UBERON:0005838 ! implied link automatically realized ! fasciculus of brain
relationship: part_of UBERON:0001891
intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0003006
name: dorsal nucleus of lateral lemniscus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_894-FMA_72483
synonym: "dorsal nucleus of the lateral lemniscus" EXACT [FMA:72483]
synonym: "posterior nucleus of lateral lemniscus" EXACT [FMA:72483]
xref: FMA:72483
xref: NIF_GrossAnatomy:birnlex_894
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003007
name: lateral parabrachial nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_897-FMA_72481
def: "The lateral parabrachial nucleus induces thirst by stimulating the median preoptic nucleus. It gets its name from its location relative to the superior cerebellar peduncles, which is also known as the 'brachia conjunctiva'. [WP,unvetted]." [Wikipedia:Lateral_parabrachial_nucleus]
subset: uberon_slim
xref: FMA:72481
xref: NIF_GrossAnatomy:birnlex_897
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003008
name: dorsal longitudinal fasciculus of hypothalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_898-FMA_62063
def: "A dorsal longitudinal fasciculus that is part of a hypothalamus [Obol]." [OBOL:automatic]
synonym: "bundle of Schutz of hypothalamus" EXACT [OBOL:automatic]
synonym: "bundle of Schutz of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "bundle of Schutz of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "dorsal longitudinal fasciculus of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "dorsal longitudinal fasciculus of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "fasciculus of Schutz of hypothalamus" EXACT [OBOL:automatic]
synonym: "fasciculus of Schutz of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "fasciculus of Schutz of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "hypothalamus bundle of Schutz" EXACT [OBOL:automatic]
synonym: "hypothalamus dorsal longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "hypothalamus fasciculus of Schutz" EXACT [OBOL:automatic]
synonym: "hypothalamus posterior longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "posterior longitudinal fasciculus of hypothalamus" EXACT [OBOL:automatic]
synonym: "posterior longitudinal fasciculus of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "posterior longitudinal fasciculus of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area bundle of Schutz" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area dorsal longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area fasciculus of Schutz" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area posterior longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region bundle of Schutz" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region dorsal longitudinal fasciculus" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region fasciculus of Schutz" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region posterior longitudinal fasciculus" EXACT [OBOL:automatic]
xref: FMA:62063
xref: NIF_GrossAnatomy:birnlex_898
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
is_a: UBERON:0003931 ! implied link automatically realized ! diencephalic white matter
is_a: UBERON:0005838 ! implied link automatically realized ! fasciculus of brain
relationship: part_of UBERON:0001898
intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus
intersection_of: part_of UBERON:0001898 ! hypothalamus
relationship: part_of UBERON:0002430 ! lateral hypothalamic area
[Term]
id: UBERON:0003009
name: dorsal tegmental decussation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_901-FMA_72451
synonym: "dorsal fountain decussation" EXACT [FMA:72451]
synonym: "fountain decussation of meynert" EXACT []
synonym: "meynert's decussation" EXACT [FMA:72451]
synonym: "posterior tegmental decussation" EXACT [FMA:72451]
xref: FMA:72451
xref: NIF_GrossAnatomy:birnlex_901
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0003010
name: lateral pes lemniscus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_902-FMA_72459
synonym: "deep pes lemniscus" EXACT [FMA:72459]
synonym: "lateral pontine bundle" EXACT [FMA:72459]
synonym: "laterale haubenfussschleife" EXACT []
synonym: "laterale pontine buendel" EXACT []
xref: FMA:72459
xref: NIF_GrossAnatomy:birnlex_902
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0003011
name: facial motor nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_903-FMA_54582
def: "The facial motor nucleus is a collection of neurons in the brainstem that belong to the facial nerve. These lower motor neurons innervate the muscles of facial expression and the stapedius. [WP,unvetted]." [Wikipedia:Facial_motor_nucleus]
comment: see comments for facial nucleus. also check ZFA/pons
subset: uberon_slim
synonym: "branchiomotor nucleus of facial nerve" EXACT [FMA:54582]
synonym: "facial motor nucleus" EXACT [FMA:54582]
synonym: "facial nucleus" RELATED [Wikipedia:Facial_nucleus]
synonym: "motor nucleus of VII" EXACT [FMA:54582]
xref: FMA:54582
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6b/Gray788.png/200px-Gray788.png
xref: NIF_GrossAnatomy:birnlex_903
xref: ZFA:0000206
is_a: UBERON:0000127 ! facial nucleus
[Term]
id: UBERON:0003012
name: flocculonodular lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_904-FMA_72253
def: "The flocculonodular lobe is a lobe of the cerebellum consisting of the nodule and the flocculus. It is closely associated with the vestibulocerebellum. [WP,unvetted]." [Wikipedia:Flocculonodular_lobe]
subset: uberon_slim
synonym: "flocculonodular lobe" EXACT [FMA:72253]
synonym: "posterior lobe-2 of cerebellum" EXACT [FMA:72253]
xref: FMA:72253
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/CerebellumDiv.png/200px-CerebellumDiv.png
xref: MA:0002965
xref: NIF_GrossAnatomy:birnlex_904
is_a: UBERON:0005293 ! cerebellum lobe
[Term]
id: UBERON:0003013
name: alar central lobule
alt_id: UBERON:NIF_GrossAnatomy_birnlex_907-FMA_72517
def: "The lobulus centralis is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the alar central lobule. [WP,unvetted]." [Wikipedia:Alar_central_lobule]
subset: uberon_slim
synonym: "alae of central lobule" EXACT [FMA:72517]
synonym: "lobules II, III of vermis" EXACT [FMA:72517]
xref: FMA:72517
xref: NIF_GrossAnatomy:birnlex_907
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003014
name: infundibulum of hypophysis
alt_id: UBERON:NIF_GrossAnatomy_birnlex_912-FMA_74635
synonym: "infundibular stem of neurohypophysis" EXACT [FMA:74635]
synonym: "infundibulum" EXACT [MA:0000858, ZFA:0001199]
synonym: "infundibulum of pituitary gland" EXACT [FMA:74635]
synonym: "infundibulum of posterior lobe of pituitary gland" EXACT [FMA:74635]
synonym: "neurohypophysis infundibulum" EXACT [FMA:74635]
synonym: "tuberal part of hypophysis" EXACT [FMA:74635]
xref: BTO:0000768
xref: EHDAA:7538
xref: EHDAA2:0000828
xref: EMAPA:17520
xref: FMA:74635
xref: HOG:0000245
xref: MA:0000858
xref: NIF_GrossAnatomy:birnlex_912
xref: ZFA:0001199
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0003015
name: anterior quadrangular lobule
alt_id: UBERON:NIF_GrossAnatomy_birnlex_913-FMA_72516
synonym: "anterior crescentic lobule of cerebellum" EXACT [FMA:72516]
synonym: "anterior quadrangular lobule of cerebellum" EXACT [FMA:72516]
synonym: "anterior quadrangular lobule of cerebellum [H IV et V]" EXACT [FMA:72516]
synonym: "anterior semilunar lobule" EXACT [FMA:72516]
synonym: "semilunar lobule-1 (anterior)" EXACT [FMA:72516]
xref: FMA:72516
xref: NIF_GrossAnatomy:birnlex_913
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003016
name: postcommissural fornix
alt_id: UBERON:NIF_GrossAnatomy_birnlex_914-FMA_62062
xref: FMA:62062
xref: NIF_GrossAnatomy:birnlex_914
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
is_a: UBERON:0003931 ! implied link automatically realized ! diencephalic white matter
relationship: part_of UBERON:0002430 ! lateral hypothalamic area
[Term]
id: UBERON:0003017
name: substantia innominata
alt_id: UBERON:NIF_GrossAnatomy_birnlex_915-FMA_61885
def: "The substantia innominata (literally 'unnamed substance') of Meynert is a stratum consisting partly of gray and partly of white substance, which lies below the anterior part of the thalamus and lentiform nucleus. The gross anatomical structure is called anterior perforated substance because to the naked eye looks perforated by many holes. Holes are due to many blood vessels that pass through this area. It is part of the basal forebrain. [WP,unvetted]." [Wikipedia:Substantia_innominata]
subset: uberon_slim
synonym: "innominate substance" EXACT [FMA:61885]
synonym: "nucleus of substantia innominata" EXACT [FMA:61885]
xref: BTO:0002447
xref: FMA:61885
xref: GAID:638
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/36/Substantia_innominata_MRI.PNG/200px-Substantia_innominata_MRI.PNG
xref: NIF_GrossAnatomy:birnlex_915
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003018
name: parvicellular part of ventral posteromedial nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_917-FMA_62207
synonym: "gustatory thalamic nucleus" EXACT [FMA:62207]
synonym: "parvicellular part of ventral posteromedial nucleus of thalamus" EXACT [FMA:62207]
synonym: "ventral posteromedial nucleus of thalamus, parvicellular part" EXACT [FMA:62207]
synonym: "ventral posteromedial nucleus, parvocellular part" EXACT [FMA:62207]
synonym: "ventral posteromedial thalamic nucleus, parvicellular part" EXACT [FMA:62207]
xref: FMA:62207
xref: NIF_GrossAnatomy:birnlex_917
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0003019
name: oral part of ventral posterolateral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_918-FMA_62205
synonym: "ventral part of ventral lateral posterior nucleus (jones)" EXACT []
synonym: "ventral posterolateral nucleus, oral part" EXACT [FMA:62205]
synonym: "ventral posterolateral thalamic nucleus, oral part" EXACT [FMA:62205]
xref: FMA:62205
xref: NIF_GrossAnatomy:birnlex_918
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0003020
name: subcallosal area
alt_id: UBERON:NIF_GrossAnatomy_birnlex_919-FMA_61890
def: "The subcallosal area (parolfactory area of Broca, area parolfactoria) is a small triangular field on the medial surface of the hemisphere in front of the subcallosal gyrus, from which it is separated by the posterior parolfactory sulcus; it is continuous below with the olfactory trigone, and above and in front with the cingulate gyrus; it is limited anteriorly by the anterior parolfactory sulcus. [WP,unvetted]." [Wikipedia:Subcallosal_area]
subset: uberon_slim
synonym: "adolfactory area" EXACT [FMA:61890]
synonym: "paraolfactory area" EXACT [FMA:61890]
synonym: "parolfactory area" EXACT [FMA:61890]
xref: FMA:61890
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png
xref: NIF_GrossAnatomy:birnlex_919
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0003021
name: central lobule
alt_id: UBERON:NIF_GrossAnatomy_birnlex_920-FMA_72519
def: "The central lobule is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the ala lobuli centralis. [WP,unvetted]." [Wikipedia:Central_lobule]
subset: uberon_slim
synonym: "central lobule of cerebellum" EXACT [FMA:72519]
synonym: "central lobule of cerebellum [II and III]" EXACT [FMA:72519]
xref: FMA:72519
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e4/Gray703.png/200px-Gray703.png
xref: MA:0000999
xref: MA:0001000
xref: NIF_GrossAnatomy:birnlex_920
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003022
name: lobe parts of cerebral cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_922-FMA_68603
comment: check w.r.t regional part of cerebreal cortex
synonym: "cerebral cortical segment" RELATED [FMA:68603]
synonym: "regional organ part of cerebral cortex" RELATED [FMA:68603]
synonym: "segment of cerebral cortex" RELATED [NIF_GrossAnatomy:birnlex_922]
xref: FMA:68603
xref: NIF_GrossAnatomy:birnlex_922
is_a: UBERON:0002619 ! regional part of cerebral cortex
[Term]
id: UBERON:0003023
name: pontine tegmentum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_923-FMA_71108
def: "The pontine tegmentum is a part of the pons of the brain involved in the initiation of REM sleep. It includes the pedunculopontine nucleus and the laterodorsal tegmental nucleus, among others, and is located near the raphe nucleus and the locus ceruleus. The trapezoid body is part of the pontine tegmentum. [WP,unvetted]." [Wikipedia:Pontine_tegmentum]
subset: uberon_slim
synonym: "dorsal portion of pons" EXACT [FMA:71108]
synonym: "tegmental portion of pons" EXACT [FMA:71108]
synonym: "tegmentum of pons" EXACT [FMA:71108]
xref: FMA:71108
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Brainstem_Abducens.png/200px-Brainstem_Abducens.png
xref: NIF_GrossAnatomy:birnlex_923
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: has_part UBERON:0002047 ! pontine raphe nucleus
relationship: has_part UBERON:0002128 ! superior olivary complex
relationship: has_part UBERON:0002148 ! locus ceruleus
relationship: has_part UBERON:0002149 ! superior salivatory nucleus
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0003024
name: principal part of ventral posteromedial nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_927-FMA_62208
xref: FMA:62208
xref: NIF_GrossAnatomy:birnlex_927
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0003025
name: brachium of inferior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_929-FMA_71114
def: "The Brachium of inferior colliculus (or inferior brachium) carries auditory afferent fibers from the inferior colliculus of the mesencephalon to the medial geniculate nucleus. [WP,unvetted]." [Wikipedia:Brachium_of_inferior_colliculus]
subset: uberon_slim
synonym: "brachium of medial geniculate" EXACT [FMA:71114]
synonym: "inferior brachium" EXACT [FMA:71114]
synonym: "inferior collicular brachium" EXACT [FMA:71114]
synonym: "inferior colliculus brachium" EXACT [FMA:71114]
synonym: "inferior quadrigeminal brachium" EXACT [FMA:71114]
synonym: "peduncle of inferior colliculus" EXACT [FMA:71114]
xref: FMA:71114
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/Human_brainstem-thalamus_posterior_view_description.JPG/200px-Human_brainstem-thalamus_posterior_view_description.JPG
xref: NIF_GrossAnatomy:birnlex_929
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0003026
name: limitans nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_931-FMA_62220
xref: FMA:62220
xref: NIF_GrossAnatomy:birnlex_931
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003027
name: cingulate cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_934-MA_0000904
def: "The cingulate cortex is a part of the brain situated in the medial aspect of the cortex. It is extended from the corpus callosum below to the cingulate sulcus above, at least anteriorly. [WP,unvetted]." [Wikipedia:Cingulate_cortex]
subset: uberon_slim
xref: BTO:0003975
xref: EFO:0000343
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/dc/Gray727_cingulate_gyrus.png/200px-Gray727_cingulate_gyrus.png
xref: MA:0000904
xref: ncithesaurus:Cingulate_Cortex
xref: NIF_GrossAnatomy:birnlex_934
is_a: UBERON:0002619 ! regional part of cerebral cortex
is_a: UBERON:0002791 ! regional part of telencephalon
is_a: UBERON:0003022 ! lobe parts of cerebral cortex
[Term]
id: UBERON:0003028
name: commissure of inferior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_935-FMA_71115
def: "A commissure that is part of a inferior colliculus [Obol]." [OBOL:automatic]
synonym: "caudal colliculus commissure" EXACT [OBOL:automatic]
synonym: "commissure of caudal colliculus" EXACT [OBOL:automatic]
synonym: "commissure of inferior colliculi" EXACT [FMA:71115]
synonym: "commissure of posterior colliculus" EXACT [OBOL:automatic]
synonym: "commissure of posterior corpus quadrigeminum" EXACT [OBOL:automatic]
synonym: "inferior collicular commissure" EXACT [FMA:71115]
synonym: "inferior colliculus commissure" EXACT [FMA:71115]
synonym: "posterior colliculus commissure" EXACT [OBOL:automatic]
synonym: "posterior corpus quadrigeminum commissure" EXACT [OBOL:automatic]
xref: FMA:71115
xref: NIF_GrossAnatomy:birnlex_935
is_a: UBERON:0001020 ! commissure
is_a: UBERON:0005970 ! implied link automatically realized ! brain commissure
relationship: part_of UBERON:0001946
intersection_of: UBERON:0001020 ! commissure
intersection_of: part_of UBERON:0001946 ! inferior colliculus
relationship: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0003029
name: stria terminalis
alt_id: UBERON:NIF_GrossAnatomy_birnlex_937-FMA_61974
def: "The stria terminalis (terminal stria) is a structure in the brain consisting of a band of fibers running along the lateral margin of the ventricular surface of the thalamus. Serving as a major output pathway of the amygdala, the stria terminalis runs from its corticomedial division to the ventral medial nucleus of the hypothalamus. [WP,unvetted]." [Wikipedia:Stria_terminalis]
subset: uberon_slim
synonym: "semicircular stria" EXACT [FMA:61974]
synonym: "terminal stria" EXACT [Wikipedia:Terminal_stria]
xref: FMA:61974
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Gray683.png/200px-Gray683.png
xref: NIF_GrossAnatomy:birnlex_937
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0003030
name: posterior nucleus of thalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_939-FMA_62221
xref: FMA:62221
xref: NIF_GrossAnatomy:birnlex_939
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0003031
name: submedial nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_946-FMA_62223
synonym: "gelatinosus thalamic nucleus" EXACT [FMA:62223]
synonym: "submedial nucleus of thalamus" EXACT [FMA:62223]
xref: FMA:62223
xref: NIF_GrossAnatomy:birnlex_946
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003033
name: suprageniculate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_953-FMA_62222
synonym: "suprageniculate thalamic nucleus" EXACT [FMA:62222]
xref: FMA:62222
xref: NIF_GrossAnatomy:birnlex_953
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003034
name: central dorsal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_956-FMA_62169
xref: FMA:62169
xref: NIF_GrossAnatomy:birnlex_956
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0003035
name: regional part of cerebellar white matter
alt_id: UBERON:NIF_GrossAnatomy_birnlex_959-FMA_72547
synonym: "segment of cerebellar white matter" EXACT [NIF_GrossAnatomy:birnlex_959]
xref: FMA:72547
xref: NIF_GrossAnatomy:birnlex_959
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003036
name: central lateral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_961-FMA_62170
synonym: "central lateral nucleus of thalamus" EXACT [FMA:62170]
synonym: "central lateral thalamic nucleus" EXACT [FMA:62170]
synonym: "centrolateral thalamic nucleus" EXACT [FMA:62170]
xref: FMA:62170
xref: NIF_GrossAnatomy:birnlex_961
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0003037
name: septum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_963-FMA_86461
def: "a wall, dividing a cavity or structure into smaller ones[WP]." [Wikipedia:Septum]
comment: general anatomical term in FMA
synonym: "septa" EXACT PLURAL []
xref: FMA:86461
xref: OpenCyc:Mx4rrqot_on_EdaAAAACs0uFOQ
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0003038
name: thoracic spinal cord
alt_id: UBERON:NIF_GrossAnatomy_birnlex_966-FMA_71167
def: "The thoracic nerves are the spinal nerves emerging from the thoracic vertebrae. [WP,unvetted]." [Wikipedia:Thoracic_spinal_cord]
subset: uberon_slim
synonym: "thoracic region of spinal cord" EXACT [FMA:71167]
synonym: "thoracic segment of spinal cord" EXACT [FMA:71167]
synonym: "thoracic segments of spinal cord [1-12]" EXACT [FMA:71167]
synonym: "thoracic spinal cord" EXACT [FMA:71167]
xref: FMA:71167
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Gray820.png/200px-Gray820.png
xref: ncithesaurus:Thoracic_Spinal_Cord
xref: NIF_GrossAnatomy:birnlex_966
is_a: UBERON:0005844 ! spinal cord segment
[Term]
id: UBERON:0003039
name: anterior commissure anterior part
alt_id: UBERON:NIF_GrossAnatomy_birnlex_969-FMA_61963
synonym: "anterior commissure, anterior part" EXACT [FMA:61963]
synonym: "olfactory limb of anterior commissure" EXACT [FMA:61963]
synonym: "olfactory part of anterior commissure" EXACT [FMA:61963]
xref: FMA:61963
xref: NIF_GrossAnatomy:birnlex_969
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
relationship: part_of UBERON:0000935 ! anterior commissure
[Term]
id: UBERON:0003040
name: central gray substance of midbrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_973-FMA_74510
def: "Periaqueductal gray (PAG; also called the 'central gray') is the gray matter located around the cerebral aqueduct within the midbrain. It plays a role in the descending modulation of pain and in defensive behaviour. The ascending pain and temperature fibers of the spinothalamic tract also send information to the PAG via the spinomesencephalic tract. The spinomesencephalic tract is so-named because the fibers originate in the spine and terminate in the mesencephalon, another name for the midbrain, the part of the brain in which the PAG resides. [WP,unvetted]." [Wikipedia:Periaqueductal_gray]
subset: uberon_slim
synonym: "anulus of cerebral aqueduct" EXACT [FMA:74510]
synonym: "central (periaqueductal) gray" EXACT [FMA:74510]
synonym: "periaqueductal gray" EXACT [FMA:74510]
synonym: "periaqueductal gray matter" EXACT [FMA:74510]
synonym: "periaqueductal gray of tegmentum" EXACT [FMA:74510]
synonym: "periaqueductal grey substance" EXACT [FMA:74510]
xref: EFO:0002470
xref: FMA:74510
xref: GAID:585
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Cn3nucleus.png/200px-Cn3nucleus.png
xref: NIF_GrossAnatomy:birnlex_973
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
[Term]
id: UBERON:0003041
name: trigeminal nerve fibers
alt_id: UBERON:NIF_GrossAnatomy_birnlex_974-FMA_72501
synonym: "central part of trigeminal nerve" EXACT [FMA:72501]
synonym: "trigeminal nerve fibers" EXACT [FMA:72501]
xref: FMA:72501
xref: NIF_GrossAnatomy:birnlex_974
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0003043
name: posterior part of anterior commissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_977-FMA_61964
synonym: "anterior commissure, posterior part" EXACT [FMA:61964]
synonym: "temporal limb of anterior commissure" EXACT [FMA:61964]
xref: FMA:61964
xref: NIF_GrossAnatomy:birnlex_977
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
relationship: part_of UBERON:0000935 ! anterior commissure
[Term]
id: UBERON:0003044
name: uncinate fasciculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_983-FMA_77636
def: "The uncinate fasciculus is a white matter tract in the human brain that connects parts of the limbic system such as the hippocampus and amygdala in the temporal lobe with frontal ones such as the orbitofrontal cortex. Its function is unknown though it is affected in several psychiatric conditions. It is the last white matter tract to mature in the human brain. [WP,unvetted]." [Wikipedia:Uncinate_fasciculus]
subset: uberon_slim
synonym: "cerebral uncinate fasciculus" EXACT [FMA:77636]
xref: FMA:77636
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d1/Gray751.png/200px-Gray751.png
xref: NIF_GrossAnatomy:birnlex_983
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003045
name: dorsal longitudinal fasciculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_986-FMA_83845
def: "The dorsal longitudinal fasciculus (DLF) (not to be confused with the medial longitudinal fasciculus) is a white matter fiber tract located within the brain stem, specifically in the dorsal brainstem tegmentum. The DLF travels through the periaqueductal gray matter. The tract is comprised of a diffuse brainstem pathway located in the periventricular gray matter comprising ascending visceral sensory axons and descending hypothalamic axons. As with all white matter tracts, the DLF consists of myelinated axons carrying information between neurons. The DLF, carries both ascending and descending fibers, conveys visceral motor and sensory signals. [WP,unvetted]." [Wikipedia:Dorsal_longitudinal_fasciculus]
subset: uberon_slim
synonym: "bundle of Schutz" EXACT [FMA:83845]
synonym: "fasciculus of Schutz" EXACT [FMA:83845]
synonym: "posterior longitudinal fasciculus" EXACT [FMA:83845]
xref: FMA:83845
xref: NIF_GrossAnatomy:birnlex_986
xref: ZFA:0005266
is_a: UBERON:0001019 ! fascicle
[Term]
id: UBERON:0003046
name: ventral acoustic stria
alt_id: UBERON:NIF_GrossAnatomy_birnlex_991-FMA_72498
synonym: "anterior acoustic stria" EXACT [FMA:72498]
xref: FMA:72498
xref: NIF_GrossAnatomy:birnlex_991
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0003047
name: regional part of pretectal region
alt_id: UBERON:NIF_GrossAnatomy_birnlex_993-FMA_74519
def: "A regional part of brain that is part of a pretectal region [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of pretectal area" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of pretectal nuclei" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of pretectal region" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of pretectum" EXACT [OBOL:automatic]
synonym: "biological structure of brain of pretectal area" EXACT [OBOL:automatic]
synonym: "biological structure of brain of pretectal nuclei" EXACT [OBOL:automatic]
synonym: "biological structure of brain of pretectal region" EXACT [OBOL:automatic]
synonym: "biological structure of brain of pretectum" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of pretectal area" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of pretectal nuclei" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of pretectal region" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of pretectum" EXACT [OBOL:automatic]
synonym: "brain biological structure of pretectal area" EXACT [OBOL:automatic]
synonym: "brain biological structure of pretectal nuclei" EXACT [OBOL:automatic]
synonym: "brain biological structure of pretectal region" EXACT [OBOL:automatic]
synonym: "brain biological structure of pretectum" EXACT [OBOL:automatic]
synonym: "neuraxis segment of pretectal area" EXACT [OBOL:automatic]
synonym: "neuraxis segment of pretectal nuclei" EXACT [OBOL:automatic]
synonym: "neuraxis segment of pretectal region" EXACT [OBOL:automatic]
synonym: "neuraxis segment of pretectum" EXACT [OBOL:automatic]
synonym: "pretectal area anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "pretectal area biological structure of brain" EXACT [OBOL:automatic]
synonym: "pretectal area brain anatomical structure" EXACT [OBOL:automatic]
synonym: "pretectal area brain biological structure" EXACT [OBOL:automatic]
synonym: "pretectal area neuraxis segment" EXACT [OBOL:automatic]
synonym: "pretectal area regional part of brain" EXACT [OBOL:automatic]
synonym: "pretectal area segment of brain" EXACT [OBOL:automatic]
synonym: "pretectal nuclei anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "pretectal nuclei biological structure of brain" EXACT [OBOL:automatic]
synonym: "pretectal nuclei brain anatomical structure" EXACT [OBOL:automatic]
synonym: "pretectal nuclei brain biological structure" EXACT [OBOL:automatic]
synonym: "pretectal nuclei neuraxis segment" EXACT [OBOL:automatic]
synonym: "pretectal nuclei regional part of brain" EXACT [OBOL:automatic]
synonym: "pretectal nuclei segment of brain" EXACT [OBOL:automatic]
synonym: "pretectal region anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "pretectal region biological structure of brain" EXACT [OBOL:automatic]
synonym: "pretectal region brain anatomical structure" EXACT [OBOL:automatic]
synonym: "pretectal region brain biological structure" EXACT [OBOL:automatic]
synonym: "pretectal region neuraxis segment" EXACT [OBOL:automatic]
synonym: "pretectal region regional part of brain" EXACT [OBOL:automatic]
synonym: "pretectal region segment" EXACT [FMA:74519]
synonym: "pretectal region segment of brain" EXACT [OBOL:automatic]
synonym: "pretectum anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "pretectum biological structure of brain" EXACT [OBOL:automatic]
synonym: "pretectum brain anatomical structure" EXACT [OBOL:automatic]
synonym: "pretectum brain biological structure" EXACT [OBOL:automatic]
synonym: "pretectum neuraxis segment" EXACT [OBOL:automatic]
synonym: "pretectum regional part of brain" EXACT [OBOL:automatic]
synonym: "pretectum segment of brain" EXACT [OBOL:automatic]
synonym: "regional part of brain of pretectal area" EXACT [OBOL:automatic]
synonym: "regional part of brain of pretectal nuclei" EXACT [OBOL:automatic]
synonym: "regional part of brain of pretectal region" EXACT [OBOL:automatic]
synonym: "regional part of brain of pretectum" EXACT [OBOL:automatic]
synonym: "segment of brain of pretectal area" EXACT [OBOL:automatic]
synonym: "segment of brain of pretectal nuclei" EXACT [OBOL:automatic]
synonym: "segment of brain of pretectal region" EXACT [OBOL:automatic]
synonym: "segment of brain of pretectum" EXACT [OBOL:automatic]
synonym: "segment of pretectal region" EXACT [NIF_GrossAnatomy:birnlex_993]
xref: FMA:74519
xref: NIF_GrossAnatomy:birnlex_993
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
is_a: UBERON:0002966 ! regional part of midbrain tectum
relationship: part_of UBERON:0001944
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0003048
name: regional part of hypothalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_995-FMA_67706
def: "A regional part of brain that is part of a hypothalamus [Obol]." [OBOL:automatic]
synonym: "anatomical structure of brain of hypothalamus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "biological structure of brain of hypothalamus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "biological structure of brain of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of hypothalamus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "brain biological structure of hypothalamus" EXACT [OBOL:automatic]
synonym: "brain biological structure of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "brain biological structure of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "hypothalamus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "hypothalamus biological structure of brain" EXACT [OBOL:automatic]
synonym: "hypothalamus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "hypothalamus brain biological structure" EXACT [OBOL:automatic]
synonym: "hypothalamus neuraxis segment" EXACT [OBOL:automatic]
synonym: "hypothalamus regional part of brain" EXACT [OBOL:automatic]
synonym: "hypothalamus segment" EXACT [FMA:67706]
synonym: "hypothalamus segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of hypothalamus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "neuraxis segment of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area biological structure of brain" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area brain anatomical structure" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area brain biological structure" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area neuraxis segment" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area regional part of brain" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic area segment of brain" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region biological structure of brain" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region brain anatomical structure" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region brain biological structure" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region neuraxis segment" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region regional part of brain" EXACT [OBOL:automatic]
synonym: "preoptico-hypothalamic region segment of brain" EXACT [OBOL:automatic]
synonym: "regional part of brain of hypothalamus" EXACT [OBOL:automatic]
synonym: "regional part of brain of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "regional part of brain of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "segment of brain of hypothalamus" EXACT [OBOL:automatic]
synonym: "segment of brain of preoptico-hypothalamic area" EXACT [OBOL:automatic]
synonym: "segment of brain of preoptico-hypothalamic region" EXACT [OBOL:automatic]
synonym: "segment of hypothalamus" EXACT [NIF_GrossAnatomy:birnlex_995]
xref: FMA:67706
xref: NIF_GrossAnatomy:birnlex_995
is_a: UBERON:0002784 ! regional part of diencephalon
relationship: part_of UBERON:0001898
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0003049
name: collagen and cuticulin-based cuticle
alt_id: UBERON:WBbt_0005755
def: "A rigid external coating which is secreted by the hypodermis, seam and some transitional epithelial cells which covers the outer body, the major openings into the body cavity from the exterior, and two large sensory bristles, the male spicules. The cuticle of the spicules, the hook, and of some portions of the spicule channels is especially rigid and is probably sclerotized. Similar sclerotic features are occasionally noted in the ventral surface of the male tail fan[WBbt]. The main structural components of the nematode cuticle are proteins, highly cross-linked collagens and specialised insoluble proteins known as cuticlins, together with glycoproteins and lipids[WP]." [UBERON:cjm, WA:dh]
comment: Note that GO has a superclass protein-based cuticle development // taxonomic restriction may be too strict
subset: uberon_slim
synonym: "nematode cuticle" RELATED []
xref: WBbt:0005755
is_a: UBERON:0001002 ! cuticle
[Term]
id: UBERON:0003050
name: olfactory placode
alt_id: UBERON:XAO_0000005-ZFA_0000048
def: "A thick plate of cells derived from the neural ectoderm in the head region of the embryo that develops into the olfactory region of the nasal cavity." [NLM:olfactory+placode, Wikipedia:Olfactory_placode]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nasal placode" RELATED []
synonym: "olfactory placodes" EXACT PLURAL []
xref: EHDAA:1504
xref: EHDAA2:0001232
xref: HOG:0000186
xref: TAO:0000048
xref: XAO:0000005
xref: ZFA:0000048
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0002346 ! neural ectoderm
[Term]
id: UBERON:0003051
name: ear vesicle
alt_id: UBERON:0004373
alt_id: UBERON:XAO_0000006-ZFA_0000051
def: "The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Auditory_vesicle, ZFIN:curator]
synonym: "auditory vesicle" RELATED [BTO:0002661]
synonym: "otic vesicle" EXACT []
synonym: "otocyst" RELATED []
synonym: "OV" RELATED []
xref: BTO:0002661
xref: EHDAA2:0001342
xref: HOG:0001148
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray40.png/200px-Gray40.png
xref: ncithesaurus:Otic_Vesicle
xref: XAO:0000006
xref: ZFA:0000051
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0005641 ! implied link automatically realized ! otocyst epithelium
relationship: develops_into UBERON:0001846
relationship: part_of UBERON:0000924
intersection_of: UBERON:0000483 ! epithelium
intersection_of: develops_into UBERON:0001846 ! internal ear
intersection_of: part_of UBERON:0000924 ! ectoderm
relationship: develops_from UBERON:0003069 ! otic placode
[Term]
id: UBERON:0003052
name: midbrain-hindbrain boundary
alt_id: UBERON:XAO_0000016-ZFA_0000042
def: "The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate." [GO:0021555]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "isthmus" RELATED []
synonym: "MHB" EXACT []
synonym: "midbrain hindbrain boundary" EXACT []
xref: EHDAA2:0000757
xref: HOG:0000649
xref: TAO:0000042
xref: XAO:0000016
xref: ZFA:0000042
is_a: UBERON:0000015 ! anatomical boundary
disjoint_from: UBERON:0001609 ! isthmus of thyroid gland
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003053
name: ventricular zone
alt_id: UBERON:XAO_0000021-ZFA_0001083
def: "There are two primary regions that are thought to give rise to neurons that make up the cerebellum. The first region is the ventricular zone (the roof of the fourth ventricle). This area produces Purkinje cells and deep cerebellar nuclear neurons." [BTO:0003654]
comment: This class was created automatically from a combination of ontologies
synonym: "brain ventricular zone" EXACT [MA:0000819]
synonym: "ventricular zone of brain" EXACT []
synonym: "VZ" EXACT []
xref: BTO:0003654
xref: HOG:0001224
xref: MA:0000819
xref: TAO:0001083
xref: XAO:0000021
xref: ZFA:0001083
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0003054
name: roof plate
alt_id: UBERON:XAO_0000022-ZFA_0007058
def: " a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells." [GO:0021509, PMID:15378040]
comment: TODO - Note that although this is classically defined as being located on the neural tube, in many AOs the roof plate continues post-embryonically after the neural tube has ceased to exist. Consider 'roof plate of neural tube'. TODO - alar plate vs roof plate
subset: uberon_slim
synonym: "alar plate" RELATED [Wikipedia:Roof_plate]
synonym: "roofplate" EXACT []
xref: EHDAA:1336
xref: EHDAA:1350
xref: EHDAA:1358
xref: EHDAA:1381
xref: EHDAA:1391
xref: EHDAA:1401
xref: EHDAA:1416
xref: EHDAA:1431
xref: EHDAA:1441
xref: EHDAA:1451
xref: EHDAA:1965
xref: EHDAA:1979
xref: EHDAA:1991
xref: EHDAA:2013
xref: EHDAA:2025
xref: EHDAA:2035
xref: EHDAA:2047
xref: EHDAA:2057
xref: EHDAA:2069
xref: EHDAA:2081
xref: EHDAA:2093
xref: EHDAA:2657
xref: EHDAA:2669
xref: EHDAA:2689
xref: EHDAA:2725
xref: EHDAA:2737
xref: EHDAA:2765
xref: EHDAA:2777
xref: EHDAA:2789
xref: EHDAA:2801
xref: EHDAA:2815
xref: EHDAA:2829
xref: EHDAA:2891
xref: EHDAA:3494
xref: EHDAA:3512
xref: EHDAA:3556
xref: EHDAA:3570
xref: EHDAA:3572
xref: EHDAA:3610
xref: EHDAA:3624
xref: EHDAA:3638
xref: EHDAA:3652
xref: EHDAA:3668
xref: EHDAA:3684
xref: EHDAA:3686
xref: EHDAA:3712
xref: EHDAA:5524
xref: EHDAA:5550
xref: EHDAA:7614
xref: EHDAA:864
xref: EHDAA:874
xref: EHDAA:884
xref: EHDAA:894
xref: EHDAA:916
xref: ZFA:0007058
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0003055
name: outermost layer of epidermis
alt_id: UBERON:XAO_0000029-ZFA_0001185
def: "Outermost layer of all layers of the epidermis[Uberon]. In fish: The outermost epidermal layer covering the fish at embryonic stages; derived from the EVL and thought to eventually be replaced by the superficial stratum of the epidermis[ZFA]." [ZFIN:curator]
comment: This class is defined generically in terms of topology. See also Stratum corneum
subset: uberon_slim
synonym: "epidermis epithelial layer" RELATED []
synonym: "epidermis outer layer" RELATED []
synonym: "EVL" RELATED []
synonym: "periderm" RELATED []
xref: XAO:0000029
xref: ZFA:0001185
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0003056
name: pre-chordal neural plate
alt_id: UBERON:XAO_0000045-ZFA_0007016
def: "The portion of neural plate anterior to the mid-hindbrain junction." [XB:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "anterior neural plate" RELATED []
xref: HOG:0001200
xref: XAO:0000045
xref: ZFA:0007016
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0003075 ! neural plate
[Term]
id: UBERON:0003057
name: chordal neural plate
alt_id: UBERON:XAO_0000046-ZFA_0007017
def: "The portion of neural plate posterior to the mid-hindbrain junction." [XB:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "posterior neural plate" RELATED []
xref: HOG:0001201
xref: XAO:0000046
xref: ZFA:0007017
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0003075 ! neural plate
[Term]
id: UBERON:0003058
name: hypochord
alt_id: UBERON:XAO_0000056-ZFA_0000031
def: "A transient rod-like structure which is endodermally derived and located immediately ventral to the notochord. The hypochord is thought to play a role in positioning the dorsal aorta[ZFA]." [ISBN:0815318960, PMID:10648245, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "subnotochordal rod" RELATED []
xref: AAO:0000733
xref: HOG:0000081
xref: TAO:0000031
xref: XAO:0000056
xref: ZFA:0000031
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0000925 ! endoderm
[Term]
id: UBERON:0003059
name: presomitic mesoderm
alt_id: UBERON:XAO_0000057-ZFA_0000279
def: "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "PSM" RELATED []
synonym: "segmental plate" EXACT []
synonym: "somitogenic mesoderm" RELATED []
xref: EFO:0001982
xref: HOG:0000559
xref: TAO:0000279
xref: XAO:0000057
xref: ZFA:0000279
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0003077 ! paraxial mesoderm
relationship: part_of UBERON:0003077 ! paraxial mesoderm
[Term]
id: UBERON:0003060
name: pronephric duct
alt_id: UBERON:XAO_0000063-ZFA_0000150
def: "Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the cloacal chamber. Kimmel et al, 1995. Wingert et al have suggested that the pronephric duct as described traditionally may consist of subregions which are analogous to portions of the tubule segment of mammalian and other fish nephrons. Wingert, 2007." [Wikipedia:Pronephric_duct, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "archinephric duct" RELATED [HOG:0000082]
xref: HOG:0000082
xref: ncithesaurus:Pronephric_Duct
xref: TAO:0000150
xref: XAO:0000063
xref: ZFA:0000150
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0003061
name: blood island
alt_id: UBERON:XAO_0000067-ZFA_0000094
def: "Region located on the ventral surface of the developing embryo that is a site of hematopoiesis and that is analogous to the yolk sac blood islands of higher vertebrates. // Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension. Kimmel et al, 1995." [PMID:9618755, Wikipedia:Blood_island, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "blood islands" EXACT PLURAL []
synonym: "caudal hematopoietic tissue" RELATED []
synonym: "posterior blood island" RELATED []
synonym: "posterior ICM" RELATED []
synonym: "VBI" RELATED []
synonym: "ventral blood island" RELATED []
synonym: "ventral lateral plate mesoderm" BROAD []
xref: EHDAA:170
xref: EHDAA:207
xref: EHDAA2:0000178
xref: HOG:0000085
xref: ncithesaurus:Blood_Island
xref: TAO:0000094
xref: XAO:0000067
xref: ZFA:0000094
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0003081 ! lateral plate mesoderm
relationship: part_of UBERON:0002390 ! hematopoietic system
[Term]
id: UBERON:0003062
name: primitive knot
alt_id: UBERON:XAO_0000072-ZFA_0000071
def: "organizer for gastrulation in vertebrates. The primitive knot starts as a regional knot of cells that forms on the blastodisc immediately anterior to where the outer layer of cells will begin to migrate inwards - an area known as the primitive streak. Posterior to the node is the primitive pit, where the cells of the epiblast (the upper layer of embryonic cells) initially begin to invaginate. This invagination expands posteriorly into the primitive groove as the cells layers continue to move into the space between the embryonic cells and the yolk. This differentiates the embryo into the germ layers - endoderm, mesoderm, and ectoderm. The primitive knot migrates posteriorly as gastrulation proceeds, eventually being absorbed into the tail bud.[WP]." [Wikipedia:Primitive_knot, Wikipedia:Regional_specification#Dorsal.2Fventral_axis_.26_organizer]
comment: TODO check XAO
subset: uberon_slim
synonym: "dorsal marginal zone" RELATED [XAO:0000072]
synonym: "embryo organizer" EXACT [GAID:1312]
synonym: "embryonic organizer" EXACT [GAID:1312]
synonym: "Hensen node" EXACT SENSU [GAID:1312, Wikipedia:Primitive_knot]
synonym: "Hensen's node" EXACT SENSU [GAID:1312, Wikipedia:Primitive_knot]
synonym: "organizer" RELATED []
synonym: "primitive node" RELATED [Wikipedia:Primitive_knot]
synonym: "shield" EXACT []
synonym: "Spemann Mangold organizer" EXACT SENSU []
synonym: "Spemann organizer" EXACT SENSU []
synonym: "Spemann's organizer" EXACT SENSU []
synonym: "Spemanns organizer" EXACT SENSU []
xref: AAO:0000346
xref: BILA:0000053
xref: BTO:0003395
xref: GAID:1312
xref: HOG:0000598
xref: TAO:0000071
xref: XAO:0000072
xref: ZFA:0000071
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0002541 ! germ ring
[Term]
id: UBERON:0003063
name: prechordal plate
alt_id: UBERON:XAO_0000079-ZFA_0000060
def: "a thickening of the endoderm at the cranial end of the primitive streak formed by the involution of Spemann's organizer cells. The prechordal plate and the notochord induce the formation of the neural plate from the overlying ectodermal cells[GO]. Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region[ZFA]. Uniquely thickened portion of the endoderm that is in contact with ectoderm immediately rostral to the cephalic tip of the notochord[WP]." [Wikipedia:Prechordal_plate, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "head mesenchyme" BROAD []
synonym: "head mesoderm" BROAD []
xref: EHDAA:181
xref: EHDAA2:0000732
xref: HOG:0000086
xref: TAO:0000060
xref: XAO:0000079
xref: ZFA:0000060
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0003068 ! axial mesoderm
relationship: part_of UBERON:0000925 ! endoderm
relationship: part_of UBERON:0004341 ! primitive streak
[Term]
id: UBERON:0003064
name: intermediate mesoderm
alt_id: UBERON:XAO_0000085-ZFA_0001206
def: "The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads." [GOC:curators, Wikipedia:Intermediate_mesoderm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "IM" RELATED []
synonym: "intermediate plate mesoderm" RELATED [UBERON:cjm]
xref: HOG:0000087
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: ncithesaurus:Intermediate_Mesoderm
xref: TAO:0001206
xref: XAO:0000085
xref: ZFA:0001206
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: adjacent_to UBERON:0003077 ! paraxial mesoderm
relationship: adjacent_to UBERON:0003081 ! lateral plate mesoderm
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003065
name: ciliary marginal zone
alt_id: UBERON:XAO_0000086-ZFA_0001289
def: "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. Wehman et al, 2005." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "circumferential germinal zone" RELATED []
synonym: "CMZ" RELATED []
xref: HOG:0000088
xref: TAO:0001289
xref: XAO:0000086
xref: ZFA:0001289
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0003066
name: hyoid arch
alt_id: UBERON:XAO_0000098-ZFA_0001276
def: "assists in forming the side and front of the neck." [Wikipedia:Second_branchial_arch]
comment: In XAO, develops from visceral pouch 2
subset: uberon_slim
synonym: "2nd arch" RELATED [EHDAA2:0000050]
synonym: "2nd pharyngeal arch" EXACT []
synonym: "branchial arch 2" EXACT SENSU []
synonym: "hyoid bars" RELATED []
synonym: "pharyngeal arch 2" EXACT []
synonym: "second branchial arch" EXACT SENSU []
synonym: "second pharyngeal arch" EXACT []
synonym: "second visceral arch" EXACT SENSU []
synonym: "visceral arch 2" EXACT SENSU []
xref: EHDAA2:0000050
xref: HOG:0000297
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Gray41.png/200px-Gray41.png
xref: ncithesaurus:Second_Pharyngeal_Arch
xref: XAO:0000098
xref: ZFA:0001611
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0003067
name: dorsolateral placode
alt_id: UBERON:XAO_0000187-ZFA_0001310
comment: This class was created automatically from a combination of ontologies
synonym: "dorsolateral placodes" RELATED []
xref: HOG:0000103
xref: TAO:0001310
xref: XAO:0000187
xref: ZFA:0001310
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0003068
name: axial mesoderm
alt_id: UBERON:XAO_0000205-ZFA_0001204
def: "The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord." [GO:0048318, Wikipedia:Chordamesoderm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "chordamesoderm" RELATED [Wikipedia:Chordamesoderm]
xref: HOG:0000107
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: TAO:0001204
xref: XAO:0000205
xref: ZFA:0001204
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003069
name: otic placode
alt_id: UBERON:XAO_0000223-ZFA_0000138
def: "Invagination of thickened epithelium near the hindbrain that gives rise to a spherically shaped ear vesicle. // Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the midsegmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)" [PMID:16217737, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "auditory placode" RELATED []
synonym: "otic capsule" RELATED []
synonym: "otic cup" EXACT [http://medical-dictionary.thefreedictionary.com/otic+cup]
synonym: "otocyst" RELATED []
xref: EHDAA:506
xref: EHDAA2:0001333
xref: HOG:0000235
xref: ncithesaurus:Otic_Placodes
xref: TAO:0000138
xref: XAO:0000223
xref: ZFA:0000138
is_a: UBERON:0003067 ! dorsolateral placode
relationship: part_of UBERON:0001690 ! ear
[Term]
id: UBERON:0003070
name: trigeminal placode
alt_id: UBERON:XAO_0000225-ZFA_0000162
def: "The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period. Kimmel et al, 1995." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: HOG:0000109
xref: TAO:0000162
xref: XAO:0000225
xref: ZFA:0000162
is_a: UBERON:0003067 ! dorsolateral placode
relationship: develops_from UBERON:0003067 ! dorsolateral placode
[Term]
id: UBERON:0003071
name: eye primordium
alt_id: UBERON:0005060
alt_id: UBERON:XAO_0000227-ZFA_0000570
def: "Portion of tissue that is part of the anterior neural keel and will form the optic vesicle[ZFA]. A paired ectodermal placode that becomes invaginated to form the embryonic lens vesicles." [GO:0046619, ZFA:0000570]
comment: TODO - check that GO's optic placode is the same as ZFA's eye primordium
synonym: "eye anlage" RELATED []
synonym: "eye field" RELATED []
synonym: "eye placode" EXACT [OBOL:automatic]
synonym: "optic field" RELATED []
synonym: "optic placode" EXACT [GO:0046619]
synonym: "optic primordium" EXACT []
xref: TAO:0000570
xref: XAO:0000227
xref: ZFA:0000570
is_a: UBERON:0001048 ! primordium
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_into UBERON:0000970
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0000970 ! eye
relationship: develops_from UBERON:0003056 ! pre-chordal neural plate
relationship: part_of UBERON:0003075 ! neural plate
[Term]
id: UBERON:0003072
name: optic cup
alt_id: UBERON:XAO_0000228-ZFA_0001202
def: "Multi-tissue structure that is comprised of neural and non-neural epithelial layers which will form the retina and retinal pigmented epithelium of the mature eye[ZFA]. double walled structured formed by expansion and invagination of the distal end of the optic vesicle that develops into the pigmented and sensory layers of the retina while the mouth of the optic cup eventually forms the pupil of the eye[MP]." [MP:0004269, ZFA:0001202]
comment: This class was created automatically from a combination of ontologies
synonym: "eye cup" RELATED []
xref: EHDAA2:0001303
xref: HOG:0000167
xref: ncithesaurus:Optic_Cup
xref: ZFA:0001202
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0004128 ! optic vesicle
relationship: develops_into UBERON:0000970 ! eye
relationship: induced_by UBERON:0003073 ! lens placode
[Term]
id: UBERON:0003073
name: lens placode
alt_id: UBERON:XAO_0000240-ZFA_0000122
def: "A thickened portion of ectoderm which serves as the precursor to the lens. SOX2 and Pou2f1 are involved in its development[WP]." [Wikipedia:Lens_placode, ZFIN:curator]
comment: refers to vertebrate lens
subset: uberon_slim
xref: EHDAA:2908
xref: EHDAA2:0000982
xref: HOG:0000166
xref: ncithesaurus:Lens_Placodes
xref: TAO:0000122
xref: XAO:0000240
xref: ZFA:0000122
is_a: UBERON:0005085 ! implied link automatically realized ! ectodermal placode
relationship: develops_into UBERON:0000965
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0000965 ! lens
relationship: induced_by UBERON:0004128 ! optic vesicle
relationship: part_of UBERON:0000076 ! external ectoderm
[Term]
id: UBERON:0003074
name: mesonephric duct
alt_id: UBERON:XAO_0000242-ZFA_0000546
def: "Paired organ that connects the primitive kidney Wolffian body (or mesonephros) to the cloaca and serves as the anlage for certain male reproductive organs. the Wolffian duct is what remains of the pronephric duct after the atrophy of the pronephros[WP]. In Zebrafish: Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber[ZFA]." [Wikipedia:Mesonephric_duct, ZFIN:curator]
comment: TODO - mesonephric portion of the nephric duct
subset: uberon_slim
synonym: "archinephric duct" RELATED [HOG:0000082, Wikipedia:Wolffian_duct]
synonym: "Leydig's duct" RELATED [Wikipedia:Wolffian_duct]
synonym: "nephric duct" RELATED [EHDAA2:0001243]
synonym: "renal duct" RELATED []
synonym: "Wolffian duct" RELATED [Wikipedia:Wolffian_duct]
xref: AAO:0000637
xref: EHDAA:1590
xref: EHDAA2:0001243
xref: EMAPA:16577
xref: GAID:1315
xref: HOG:0000082
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png
xref: ncithesaurus:Mesonephric_Duct
xref: TAO:0000546
xref: XAO:0000242
xref: ZFA:0000546
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0003060 ! pronephric duct
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0003075
name: neural plate
alt_id: UBERON:XAO_0000249-ZFA_0000132
def: "A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube. At NF stage 11.5 is the first indication of neural plate within the sensorial layer of ectoderm. It extends to near the animal pole by NF stage 12.5 and the entire plate is faintly delimited by NF stage 13. // The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium. Kimmel et al, 1995." [ISBN:0815318960, OMD:neural+plate, Wikipedia:Neural_plate, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "presumptive central nervous system" RELATED []
xref: BTO:0001765
xref: EHDAA:346
xref: EHDAA:902
xref: EHDAA2:0001252
xref: HOG:0000068
xref: ncithesaurus:Neural_Plate
xref: TAO:0000132
xref: XAO:0000249
xref: ZFA:0000132
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0002346 ! neural ectoderm
[Term]
id: UBERON:0003076
name: posterior neural tube
alt_id: UBERON:XAO_0000250-ZFA_0007037
comment: This class was created automatically from a combination of ontologies
xref: HOG:0001383
xref: TAO:0007037
xref: XAO:0000250
xref: ZFA:0007037
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0003057 ! chordal neural plate
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0003077
name: paraxial mesoderm
alt_id: UBERON:XAO_0000259-ZFA_0000255
def: "Area of mesoderm at either side of the midline embryonic notochord that, on segmentation, forms the paired somites. // Mesoderm which is lateral to the neural tube on both sides. //GO: The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube" [OMD:paraxial+mesoderm, Wikipedia:Paraxial_mesoderm, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "paraxial mesenchyme" RELATED []
synonym: "somitic mesoderm" EXACT [ISBN:9780878932504 "Developmental Biology"]
xref: HOG:0000114
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: ncithesaurus:Paraxial_Mesoderm
xref: TAO:0000255
xref: XAO:0000259
xref: ZFA:0000255
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0003313 ! implied link automatically realized ! mesenchyme of embryo
relationship: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003078
name: epibranchial placode
alt_id: UBERON:XAO_0000284-ZFA_0001294
comment: This class was created automatically from a combination of ontologies
synonym: "epibranchial placodes" RELATED []
xref: HOG:0000117
xref: TAO:0001294
xref: XAO:0000284
xref: ZFA:0001294
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0003067 ! dorsolateral placode
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0003079
name: floor plate
alt_id: UBERON:XAO_0000306-ZFA_0000022
def: "Organizing center consisting of a small group of cells located at the ventral midline of the neural tube that influences the development of the nervous system, governing the specification of neuronal cell types and directing axonal trajectories[XAO]. a structure integral to the developing nervous system of vertebrate organisms. Located on the ventral midline of the embryonic neural tube, the floor plate is a specialized glial structure that spans the anteroposterior axis from the midbrain to the tail regions. It has been shown that the floor plate is conserved among vertebrates with homologous structures in invertebrates such as the fruit fly Drosophila and the nematode C. elegans. Functionally, the structure serves as an organizer to ventralize tissues in the embryo as well as to guide neuronal positioning and differentiation along the dorsoventral axis of the neural tube[WP]." [GO:0021508, PMID:15738958, Wikipedia:Floor_plate]
comment: TODO - Note that although this is classically defined as being located on the neural tube, in many AOs the floor plate continues post-embryonically after the neural tube has ceased to exist. Consider 'floor plate of neural tube'.
subset: uberon_slim
synonym: "flexural organ" RELATED []
synonym: "floorplate" EXACT []
xref: BTO:0001720
xref: EHDAA:1375
xref: EHDAA:1385
xref: EHDAA:1395
xref: EHDAA:1410
xref: EHDAA:1425
xref: EHDAA:1435
xref: EHDAA:1445
xref: EHDAA:1955
xref: EHDAA:1975
xref: EHDAA:1985
xref: EHDAA:2005
xref: EHDAA:2017
xref: EHDAA:2029
xref: EHDAA:2039
xref: EHDAA:2051
xref: EHDAA:2061
xref: EHDAA:2073
xref: EHDAA:2085
xref: EHDAA:2651
xref: EHDAA:2663
xref: EHDAA:2675
xref: EHDAA:2717
xref: EHDAA:2729
xref: EHDAA:2757
xref: EHDAA:2769
xref: EHDAA:2781
xref: EHDAA:2793
xref: EHDAA:2805
xref: EHDAA:2819
xref: EHDAA:2871
xref: EHDAA:304
xref: EHDAA:312
xref: EHDAA:320
xref: EHDAA:328
xref: EHDAA:334
xref: EHDAA:340
xref: EHDAA:3480
xref: EHDAA:3498
xref: EHDAA:3520
xref: EHDAA:3546
xref: EHDAA:3560
xref: EHDAA:3576
xref: EHDAA:3600
xref: EHDAA:3614
xref: EHDAA:3628
xref: EHDAA:3642
xref: EHDAA:3656
xref: EHDAA:3672
xref: EHDAA:3698
xref: EHDAA:5500
xref: EHDAA:5528
xref: EHDAA:7590
xref: EHDAA:834
xref: EHDAA:842
xref: EHDAA:846
xref: EHDAA:858
xref: EHDAA:868
xref: EHDAA:878
xref: EHDAA:888
xref: EHDAA:910
xref: EHDAA2:0000545
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Gray642.png/200px-Gray642.png
xref: TAO:0000022
xref: ZFA:0000022
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0003080
name: anterior neural tube
alt_id: UBERON:XAO_0000307-ZFA_0007038
comment: This class was created automatically from a combination of ontologies
xref: HOG:0001384
xref: TAO:0007038
xref: XAO:0000307
xref: ZFA:0007038
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0003056 ! pre-chordal neural plate
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0003081
name: lateral plate mesoderm
alt_id: UBERON:XAO_0000311-ZFA_0000121
def: "Portion of the middle of the three primary germ layers of the embryo that resides on the periphery of the embryo, is continuous with the extra-embryonic mesoderm, splits into two layers enclosing the intra-embryonic coelom, and gives rise to body wall structures[MP]." [MP:0010117, Wikipedia:Lateral_plate_mesoderm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateral mesoderm" EXACT []
synonym: "lateral plate" RELATED []
xref: HOG:0000118
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png
xref: ncithesaurus:Lateral_Mesoderm
xref: TAO:0000121
xref: TAO:0001065
xref: XAO:0000311
xref: ZFA:0000121
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0000926 ! mesoderm
relationship: surrounds UBERON:0003887 ! intraembryonic coelom
[Term]
id: UBERON:0003082
name: myotome
alt_id: UBERON:XAO_0000315-ZFA_0001056
def: "A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA]" [MP:0003939, PMID:17313522, Wikipedia:Myotome, ZFIN:curator]
comment: The term "myotome" is also used to describe the muscles served by a single nerve root
subset: uberon_slim
synonym: "myomeres" RELATED []
synonym: "myotomes" RELATED []
xref: BTO:0000742
xref: EHDAA:1721
xref: EHDAA:1727
xref: EHDAA:1733
xref: EHDAA:1739
xref: HOG:0001244
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray65.png/200px-Gray65.png
xref: TAO:0001056
xref: XAO:0000315
xref: ZFA:0001056
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0002329 ! somite
[Term]
id: UBERON:0003083
name: trunk neural crest
alt_id: UBERON:XAO_0000319-ZFA_0001024
def: "Trunk portion of the neural crest. The trunk neural crest lies between the vagal and sacral neural crest and gives rise to two groups of cells. One group migrates dorsolateral and populates the skin, forming pigment cells and the other migrates ventrolateral through the anterior sclerotome to become the epinephrine-producing cells of the adrenal gland and the neurons of the sympathetic nervous system. Some cells remain in the sclerotome to form the dorsal root ganglia [Wikipedia]." [ISBN:0815318960, Wikipedia:Trunk_neural_crest]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "trunk crest" RELATED []
xref: HOG:0000062
xref: TAO:0001024
xref: XAO:0000319
xref: ZFA:0001024
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0003084
name: heart primordium
alt_id: UBERON:XAO_0000336-ZFA_0000028
def: "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. Stainier 2001." [ZFIN:curator]
comment: TODO - check
subset: uberon_slim
synonym: "fused heart primordium" RELATED []
xref: BTO:0001887
xref: XAO:0000336
xref: ZFA:0000028
is_a: UBERON:0004291 ! heart rudiment
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0003085
name: ventral aorta
alt_id: UBERON:XAO_0000338-ZFA_0000604
def: "Outflow artery from the heart to the aortic arches. Kimmel et al, 1995." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: HOG:0000121
xref: TAO:0000604
xref: XAO:0000338
xref: ZFA:0000604
is_a: UBERON:0000947 ! aorta
[Term]
id: UBERON:0003086
name: caudal artery
alt_id: UBERON:XAO_0000364-ZFA_0000011
def: "Extension of the dorsal aorta in the tail. Kimmel et al, 1995." [Wikipedia:Caudal_artery, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CA" RELATED []
xref: HOG:0000123
xref: TAO:0000011
xref: XAO:0000364
xref: ZFA:0000011
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0003087
name: anterior cardinal vein
alt_id: UBERON:XAO_0000383-ZFA_0000423
def: "the two paired veins draining the cephalic part of the body." [MP:0004784]
comment: This class was created automatically from a combination of ontologies
synonym: "ACV" RELATED []
synonym: "rostral cardinal veins" RELATED []
xref: EHDAA:1312
xref: EHDAA2:0000127
xref: EMAPA:16355
xref: HOG:0000113
xref: ncithesaurus:Anterior_Cardinal_Vein
xref: TAO:0000423
xref: XAO:0000383
xref: ZFA:0000423
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0003088
name: caudal vein
alt_id: UBERON:XAO_0000390-ZFA_0000180
def: "Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterial cardinal vein in the posterior trunk. Kimmel et al, 1995." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CV" RELATED []
xref: HOG:0000126
xref: TAO:0000180
xref: XAO:0000390
xref: ZFA:0000180
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0003089
name: sclerotome
alt_id: UBERON:XAO_0000397-ZFA_0001080
def: "Ventral somitic compartment that is a precursor of the axial skeleton[XAO]. Sclerotomes eventually differentiate into the vertebrae and most of the skull. The caudal (posterior) half of one sclerotome fuses with the rostral (anterior) half of the adjacent one to form each vertebra. From their initial location within the somite, the sclerotome cells migrate medially towards the notochord. These cells meet the sclerotome cells from the other side to form the vertebral body. From this vertebral body, sclerotome cells move dorsally and surround the developing spinal cord, forming the vertebral arch[WP]." [Wikipedia:Sclerotome, XB:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:1193
xref: EHDAA:1199
xref: EHDAA:1205
xref: EHDAA:1211
xref: EHDAA:1217
xref: EHDAA:1223
xref: EHDAA:1229
xref: EHDAA:1235
xref: EHDAA:1807
xref: EHDAA:1813
xref: EHDAA:1819
xref: EHDAA:1825
xref: EHDAA:1831
xref: EHDAA:1837
xref: EHDAA:1843
xref: EHDAA:1849
xref: EHDAA:1855
xref: EHDAA:2477
xref: EHDAA:2483
xref: EHDAA:2489
xref: EHDAA:2495
xref: EHDAA:2501
xref: EHDAA:2507
xref: EHDAA:2513
xref: EHDAA:2519
xref: EHDAA:2525
xref: EHDAA:2531
xref: EHDAA:674
xref: EHDAA:677
xref: EHDAA:680
xref: EHDAA:684
xref: EHDAA:703
xref: EHDAA:707
xref: EHDAA:711
xref: EHDAA:715
xref: EHDAA:719
xref: EHDAA:723
xref: EHDAA:727
xref: EHDAA:731
xref: HOG:0000680
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray65.png/200px-Gray65.png
xref: ncithesaurus:Sclerotome
xref: TAO:0001080
xref: XAO:0000397
xref: ZFA:0001080
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002329 ! somite
[Term]
id: UBERON:0003090
name: supraorbital lateral line
alt_id: UBERON:XAO_0000442-ZFA_0000443
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: HOG:0000128
xref: TAO:0000443
xref: XAO:0000442
xref: ZFA:0000443
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0002540 ! lateral line system
[Term]
id: UBERON:0003091
name: thyroid primordium
alt_id: UBERON:XAO_0000444-ZFA_0001081
comment: This class was created automatically from a combination of ontologies
xref: EHDAA:952
xref: EHDAA2:0002033
xref: ncithesaurus:Thyroid_Primordium
xref: TAO:0001081
xref: XAO:0000444
xref: ZFA:0001081
is_a: UBERON:0001048 ! primordium
relationship: develops_from UBERON:0001731 ! cavity of pharynx
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0003092
name: ultimobranchial body
alt_id: UBERON:XAO_0000452-ZFA_0001448
def: "The ultimobranchial body or gland is a small organ found in the neck region of many animals. In humans, the ultimobranchial body is an embryological structure that gives rise to the calcitonin-producing cells—also called parafollicular cells or clear cells—of the thyroid gland. In humans, this body is a derivative of the ventral recess of the fourth pharyngeal pouch (or fifth) [WP,unvetted]." [Wikipedia:Ultimobranchial_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:2987
xref: EHDAA:9139
xref: EHDAA2:0002103
xref: GAID:1246
xref: HOG:0001185
xref: TAO:0001448
xref: XAO:0000452
xref: ZFA:0001448
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_from UBERON:0003117 ! pharyngeal arch 6
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0003093
name: occipital lateral line
alt_id: UBERON:XAO_0000458-ZFA_0000400
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "supratemporal lateral line" RELATED []
xref: HOG:0000131
xref: TAO:0000400
xref: XAO:0000458
xref: ZFA:0000400
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0002540 ! lateral line system
[Term]
id: UBERON:0003094
name: infraorbital lateral line
alt_id: UBERON:XAO_0000459-ZFA_0000524
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: HOG:0000132
xref: TAO:0000524
xref: XAO:0000459
xref: ZFA:0000524
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0002540 ! lateral line system
[Term]
id: UBERON:0003095
name: dorsal lateral line
alt_id: UBERON:XAO_0000462-ZFA_0005112
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: TAO:0005112
xref: XAO:0000462
xref: ZFA:0005112
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0002540 ! lateral line system
[Term]
id: UBERON:0003096
name: middle lateral line
alt_id: UBERON:XAO_0000463-ZFA_0000344
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: HOG:0000133
xref: TAO:0000344
xref: XAO:0000463
xref: ZFA:0000344
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0002540 ! lateral line system
[Term]
id: UBERON:0003097
name: dorsal fin
alt_id: UBERON:XAO_0000469-ZFA_0001173
def: "." [Wikipedia:Dorsal_fin]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: OpenCyc:Mx4rvVjbzZwpEbGdrcN5Y29ycA
xref: TAO:0001173
xref: XAO:0000469
xref: ZFA:0001173
is_a: UBERON:0002534 ! fin
relationship: develops_from UBERON:0003083 ! trunk neural crest
[Term]
id: UBERON:0003098
name: optic stalk
alt_id: UBERON:XAO_0000475-ZFA_0000137
def: "The optic vesicles project toward the sides of the head, and the peripheral part of each expands to form a hollow bulb, while the proximal part remains narrow and constitutes the optic stalk. [WP,unvetted]." [Wikipedia:Optic_stalk]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001604
xref: EHDAA:3816
xref: EHDAA2:0001318
xref: HOG:0000223
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Gray864.png/200px-Gray864.png
xref: ncithesaurus:Optic_Stalk
xref: TAO:0000137
xref: XAO:0000475
xref: ZFA:0000137
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0003072 ! optic cup
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003099
name: cranial neural crest
alt_id: UBERON:XAO_0001001-ZFA_0001194
def: "Neural crest that is part of the head [ZFA].The cranial neural crest arises in the anterior and populates the face and the pharyngeal arches giving rise to bones, cartilage, nerves and connective tissue [Wikipedia]." [Wikipedia:Cranial_neural_crest, ZFA:0001194, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "head crest" RELATED []
xref: HOG:0000063
xref: TAO:0001194
xref: XAO:0001001
xref: ZFA:0001194
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0003100
name: female organism
alt_id: UBERON:XAO_0003005-ZFA_0000303
def: "Gonochoristic organism that can produce female gametes. // Gonochoristic organism that can produce female gametes." [CARO:0000028, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: BILA:0000028
xref: CARO:0000028
xref: FBbt:00007011
xref: FMA:67812
xref: HAO:0000028
xref: TAO:0000303
xref: XAO:0003005
xref: ZFA:0000303
is_a: UBERON:0000468 ! multi-cellular organism
disjoint_from: UBERON:0003101 ! male organism
[Term]
id: UBERON:0003101
name: male organism
alt_id: UBERON:XAO_0003006-ZFA_0000242
def: "Gonochoristic organism that can produce male gametes. // Gonochoristic organism that can produce male gametes." [CARO:0000027, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: BILA:0000027
xref: CARO:0000027
xref: FBbt:00007004
xref: FMA:67811
xref: HAO:0000027
xref: TAO:0000242
xref: XAO:0003006
xref: ZFA:0000242
is_a: UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0003102
name: surface structure
alt_id: UBERON:XAO_0003028-ZFA_0000292
def: "Organism subdivision that is the collection of anatomical structures on the body surface[ZFA]." [Wikipedia:Surface_structure, ZFA:0000292, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: TAO:0000292
xref: XAO:0003028
xref: ZFA:0000292
is_a: UBERON:0000475 ! organism subdivision
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0000076 ! external ectoderm
[Term]
id: UBERON:0003103
name: compound organ
alt_id: UBERON:XAO_0003041-ZFA_0000496
def: "Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types. // Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [CARO:0000024, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "organ" RELATED []
xref: AEO:0000024
xref: BILA:0000024
xref: CARO:0000024
xref: EHDAA2:0003024
xref: HAO:0000024
xref: NIF_GrossAnatomy:birnlex_4
xref: TAO:0000496
xref: XAO:0003041
xref: ZFA:0000496
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0003104
name: mesenchyme
alt_id: UBERON:XAO_0003046-ZFA_0000393
def: "Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage[XAO]. A mesh-like cell arrangement, less compact than an epithelium[ZFA]. The part of the embryonic mesoderm, consisting of loosely packed, unspecialized cells set in a gelatinous ground substance, from which connective tissue, bone, cartilage, and the circulatory and lymphatic systems develop[BTO]." [BTO:0001393, Wikipedia:Mesenchyme, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "mesenchymal tissue" EXACT []
synonym: "mesenchyme tissue" EXACT []
xref: AEO:0000145
xref: BTO:0001393
xref: EHDAA:177
xref: EHDAA:205
xref: EHDAA2:0001113
xref: EMAPA:16097
xref: HOG:0000170
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Mesenchymal_Stem_Cell.jpg/200px-Mesenchymal_Stem_Cell.jpg
xref: ncithesaurus:Mesenchyme
xref: TAO:0000393
xref: XAO:0003046
xref: ZFA:0000393
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003105
name: dorsal lateral plate region
alt_id: UBERON:XAO_0003051-ZFA_0005028
def: "Region located near the pronephros and pronephric ducts that is a site of hematopoiesis in the embryo. // Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf." [PMID:9618755, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "AGM" RELATED []
synonym: "AGM region" RELATED []
synonym: "aorta gonad mesonephros region" RELATED []
synonym: "aorta-gonads-mesonephros region" RELATED []
synonym: "DLP" EXACT []
synonym: "ventral wall of dorsal aorta" EXACT []
xref: TAO:0005028
xref: XAO:0003051
xref: ZFA:0005028
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0003081 ! lateral plate mesoderm
[Term]
id: UBERON:0003106
name: urostyle
alt_id: UBERON:XAO_0003080-ZFA_0000158
def: "This centrum may be formed via the fusion of the terminal centrum and half-centrum. It is sometimes termed the 'ultimate' vertebra. Mabee and Bird, 2001." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "compound centrum" RELATED []
synonym: "last vertebra" RELATED []
synonym: "ultimate vertebra" RELATED []
xref: AAO:0000732
xref: TAO:0000158
xref: XAO:0003080
xref: ZFA:0000158
is_a: UBERON:0002513 ! endochondral bone
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
[Term]
id: UBERON:0003107
name: Meckel's cartilage
alt_id: UBERON:XAO_0003085-ZFA_0001205
def: "Paired cartilaginous component of the lower jaw that fuses together through a median inferior labial cartilage, resulting in a single curved bar of cartilage by metamorphic climax. During metamorphosis it is surrounded by the developing dentale and goniale. // Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jar, or ventral mandibular arch. It is typically resorbed in adults." [PMID:3693112, Wikipedia:Meckel's_cartilage, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Meckels cartilage" EXACT []
xref: AAO:0000289
xref: EHDAA:7997
xref: EHDAA2:0001072
xref: HOG:0000249
xref: MA:0001580
xref: TAO:0001205
xref: XAO:0003085
xref: ZFA:0001205
is_a: UBERON:0002418 ! cartilage
is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001710 ! lower jaw
relationship: part_of UBERON:0004362 ! mandibular arch
[Term]
id: UBERON:0003108
name: suspensorium
alt_id: UBERON:XAO_0003086-ZFA_0000444
comment: This class was created automatically from a combination of ontologies
synonym: "hyopalatine" RELATED []
synonym: "suspensoria" RELATED []
xref: AAO:0000596
xref: TAO:0000444
xref: XAO:0003086
xref: ZFA:0000444
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0003129 ! skull
[Term]
id: UBERON:0003109
name: parapophysis
alt_id: UBERON:XAO_0003102-ZFA_0001362
def: "Endochondral bone that forms from a lateral outgrowth of the basiventral arcualia and connects the rib with the vertebral centrum[TAO]. A lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. ZFA: They can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops." [ZFIN:curator]
comment: TODO - check
subset: uberon_slim
synonym: "lateral process of basiventral" RELATED []
xref: AAO:0000698
xref: AAO:0000708
xref: TAO:0001362
xref: XAO:0003102
xref: ZFA:0001362
is_a: UBERON:0001077 ! transverse process of vertebra
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004247 ! implied link automatically realized ! back bone
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
[Term]
id: UBERON:0003110
name: otic region
alt_id: UBERON:ZFA_0000189-XAO_0003175
synonym: "cranial vault" RELATED [ZFA:0000189]
xref: XAO:0003175
xref: ZFA:0000189
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0003111
name: sphenoid region
alt_id: UBERON:ZFA_0000290-XAO_0003174
xref: XAO:0003174
xref: ZFA:0000290
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0003112
name: olfactory region
alt_id: UBERON:ZFA_0000351-XAO_0003172
synonym: "ethmoid region" EXACT [ZFA:0000351]
xref: XAO:0003172
xref: ZFA:0000351
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0003113
name: dermatocranium
alt_id: UBERON:ZFA_0000863-XAO_0003169
def: "Bony parts of the skull derived from ossifications in the dermis of the skin[FD]." [http://encyclopedia2.thefreedictionary.com/dermatocranium]
synonym: "dermal bone cranium" EXACT [ZFA:0000863]
xref: XAO:0003169
xref: ZFA:0000863
is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
relationship: develops_from UBERON:0002342 ! neural crest
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0003114
name: pharyngeal arch 3
def: "The third branchial arch contributes to the development of the hyoid bone, stylopharyngeus muscle, inferior parathyroid gland, and thymus." [MP:0006339]
comment: in XAO, called branchial arch 1 and df VP3
synonym: "3rd arch" RELATED [EHDAA2:0000069]
synonym: "3rd pharyngeal arch" EXACT []
synonym: "branchial arch 1" RELATED SENSU [ZFA:0001606]
synonym: "first branchial arch" RELATED SENSU [ZFA:0001606]
synonym: "first gill arch" EXACT SENSU [ZFA:0001606]
synonym: "gill arch 1" EXACT SENSU [ZFA:0001606]
synonym: "third branchial arch" EXACT SENSU []
synonym: "third pharyngeal arch" EXACT []
synonym: "third visceral arch" EXACT []
synonym: "visceral arch 3" EXACT []
xref: EHDAA2:0000069
xref: HOG:0000298
xref: XAO:0000447
xref: ZFA:0001606
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0003115
name: pharyngeal arch 4
def: "contributes to development of the cartilage of the larynx, laryngeal, pharyngeal, and soft palate muscles, superior parathyroid gland, and C-cells of the thymus" [MP:0006340]
comment: in XAO, called branchial arch 2 and df VP4
subset: uberon_slim
synonym: "4th arch" RELATED [EHDAA2:0000086]
synonym: "4th branchial arch" EXACT SENSU []
synonym: "4th pharyngeal arch" EXACT []
synonym: "4th visceral arch" EXACT []
synonym: "branchial arch 2" RELATED SENSU [ZFA:0001607]
synonym: "fourth branchial arch" EXACT SENSU []
synonym: "fourth pharyngeal arch" EXACT []
synonym: "gill arch 2" EXACT SENSU [ZFA:0001607]
synonym: "second branchial arch" RELATED SENSU [ZFA:0001607]
synonym: "second gill arch" EXACT SENSU [ZFA:0001607]
synonym: "visceral arch 4" EXACT []
xref: EHDAA2:0000086
xref: HOG:0000299
xref: XAO:0000449
xref: ZFA:0001607
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0003116
name: pharyngeal arch 5
def: "Only exists transiently in humans" []
comment: in XAO, called branchial arch 3 and df VP5
synonym: "branchial arch 3" RELATED [ZFA:0001608]
synonym: "fifth visceral arch" EXACT [XAO:0000451]
synonym: "gill arch 3" EXACT [ZFA:0001608]
synonym: "third branchial arch" RELATED SENSU [XAO:0000451]
synonym: "visceral arch 5" EXACT [ZFA:0001608]
xref: HOG:0001204
xref: XAO:0000451
xref: ZFA:0001608
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0003117
name: pharyngeal arch 6
alt_id: UBERON:0004349
alt_id: UBERON:ZFA_0001609-XAO_0000453
def: "contributes to the development of the sternocleidomastoid and trapezius muscles" [MP:0006347]
synonym: "6th branchial arch" EXACT []
synonym: "branchial arch 4" RELATED SENSU [ZFA:0001609]
synonym: "branchial arch 6" EXACT []
synonym: "fourth branchial arch" RELATED SENSU []
synonym: "gill arch 4" EXACT [ZFA:0001609]
synonym: "sixth branchial arch" EXACT []
synonym: "sixth visceral arch" RELATED [XAO:0000453]
synonym: "visceral arch 6" EXACT [ZFA:0001609]
xref: HOG:0001205
xref: XAO:0000453
xref: ZFA:0001609
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0003118
name: aortic arch 1
alt_id: UBERON:ZFA_0005005-XAO_0000342
def: "An aortic arch that is part of a mandibular arch [Obol]." [OBOL:automatic]
synonym: "AA1" EXACT [ZFA:0005005]
synonym: "first aortic arch" EXACT [XAO:0000342]
synonym: "mandibular aortic arch" EXACT [ZFA:0005005]
xref: HOG:0000149
xref: TAO:0005004
xref: XAO:0000342
xref: ZFA:0005005
is_a: UBERON:0004363 ! implied link automatically realized ! aortic arch
relationship: part_of UBERON:0004362
intersection_of: UBERON:0004363 ! aortic arch
intersection_of: part_of UBERON:0004362 ! mandibular arch
[Term]
id: UBERON:0003119
name: aortic arch 2
alt_id: UBERON:ZFA_0005006-XAO_0000343
def: "The first and second arches disappear early, but the dorsal end of the second gives origin to the stapedial artery, a vessel which atrophies in humans but persists in some mammals. It passes through the ring of the stapes and divides into supraorbital, infraorbital, and mandibular branches which follow the three divisions of the trigeminal nerve. The infraorbital and mandibular arise from a common stem, the terminal part of which anastomoses with the external carotid. On the obliteration of the stapedial artery this anastomosis enlarges and forms the internal maxillary artery, and the branches of the stapedial artery are now branches of this vessel. The common stem of the infraorbital and mandibular branches passes between the two roots of the auriculotemporal nerve and becomes the middle meningeal artery; the original supraorbital branch of the stapedial is represented by the orbital twigs of the middle meningeal[WP]." [Wikipedia:Aortic_arches#Arches_1_and_2]
synonym: "AA2" EXACT [ZFA:0005006]
synonym: "hyoid aortic arch" EXACT [ZFA:0005006]
synonym: "second aortic arch" EXACT [XAO:0000343]
xref: HOG:0000148
xref: XAO:0000343
xref: ZFA:0005006
is_a: UBERON:0004363 ! implied link automatically realized ! aortic arch
relationship: part_of UBERON:0003066
intersection_of: UBERON:0004363 ! aortic arch
intersection_of: part_of UBERON:0003066 ! hyoid arch
[Term]
id: UBERON:0003120
name: aortic arch 3
alt_id: UBERON:ZFA_0005007-XAO_0000344
def: "The third aortic arch constitutes the commencement of the internal carotid artery, and is therefore named the carotid arch[WP]." [Wikipedia:Aortic_arches#Arch_3]
synonym: "AA3" EXACT [ZFA:0005007]
synonym: "carotid arch" EXACT [Wikipedia:Aortic_arches#Arch_3]
synonym: "third aortic arch" EXACT [XAO:0000344]
xref: HOG:0000147
xref: XAO:0000344
xref: ZFA:0005007
is_a: UBERON:0004363 ! implied link automatically realized ! aortic arch
relationship: part_of UBERON:0003114
intersection_of: UBERON:0004363 ! aortic arch
intersection_of: part_of UBERON:0003114 ! pharyngeal arch 3
[Term]
id: UBERON:0003121
name: aortic arch 4
alt_id: UBERON:ZFA_0005008-XAO_0000355
def: "The fourth right arch forms the right subclavian as far as the origin of its internal mammary branch; while the fourth left arch constitutes the arch of the aorta between the origin of the left carotid artery and the termination of the ductus arteriosus[WP]." [Wikipedia:Aortic_arches#Arch_4]
synonym: "AA4" EXACT [ZFA:0005008]
synonym: "fourth aortic arch" EXACT [XAO:0000355]
xref: HOG:0000146
xref: XAO:0000355
xref: ZFA:0005008
is_a: UBERON:0004363 ! implied link automatically realized ! aortic arch
relationship: part_of UBERON:0003115
intersection_of: UBERON:0004363 ! aortic arch
intersection_of: part_of UBERON:0003115 ! pharyngeal arch 4
[Term]
id: UBERON:0003122
name: aortic arch 5
alt_id: UBERON:ZFA_0005009-XAO_0000352
def: "The fifth arch disappears on both sides[WP]." [Wikipedia:Aortic_arches#Arch_5]
synonym: "AA5" EXACT [ZFA:0005009]
synonym: "fifth aortic arch" EXACT [XAO:0000352]
xref: HOG:0000145
xref: XAO:0000352
xref: ZFA:0005009
is_a: UBERON:0004363 ! implied link automatically realized ! aortic arch
relationship: part_of UBERON:0003116
intersection_of: UBERON:0004363 ! aortic arch
intersection_of: part_of UBERON:0003116 ! pharyngeal arch 5
[Term]
id: UBERON:0003123
name: aortic arch 6
alt_id: UBERON:ZFA_0005016-XAO_0000353
def: "The sixth right arch disappears; the sixth left arch gives off the pulmonary arteries and forms the ductus arteriosus; this duct remains pervious during the whole of fetal life, but then closes within the first few days after birth due to increased O2 concentration. Oxygen concentration causes the production of bradykinin which causes the ductus to constrict occluding all flow. Within 1-3 months, the ductus is obliterated and becomes the ligamentum arteriosus. His showed that in the early embryo the right and left arches each gives a branch to the lungs, but that later both pulmonary arteries take origin from the left arch[WP]." [Wikipedia:Aortic_arches#Arch_6]
synonym: "AA6" EXACT [ZFA:0005016]
synonym: "sixth aortic arch" EXACT [XAO:0000353]
xref: HOG:0000144
xref: XAO:0000353
xref: ZFA:0005016
is_a: UBERON:0004363 ! implied link automatically realized ! aortic arch
relationship: part_of UBERON:0003117
intersection_of: UBERON:0004363 ! aortic arch
intersection_of: part_of UBERON:0003117 ! pharyngeal arch 6
[Term]
id: UBERON:0003124
name: chorion
def: "Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo [ZFA]. The outer membrane of the two membranes enclosing the embryo in reptiles, birds, and mammals. In placental mammals it contributes to the development of the placenta[BTO]. Wikipedia: The chorion is one of the membranes that exists during pregnancy between the developing fetus and mother. It is formed by extraembryonic mesoderm and the two layers of trophoblast and surrounds the embryo and other membranes. The chorionic villi emerge from the chorion, invade the endometrium, and allow transfer of nutrients from maternal blood to fetal blood." [ZFA:0000020]
subset: uberon_slim
synonym: "chorion (vertebrates)" EXACT []
xref: BTO:0000252
xref: EHDAA:150
xref: EHDAA2:0000245
xref: FMA:80224
xref: GAID:1299
xref: HOG:0000200
xref: ncithesaurus:Chorion
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
is_a: UBERON:0005631 ! extraembryonic membrane
relationship: adjacent_to UBERON:0000922 ! embryo
relationship: part_of UBERON:0000992 ! ovary
[Term]
id: UBERON:0003125
name: vitelline membrane
def: "a structure directly adjacent to the outer surface of the plasma membrane of an ovum. It is composed mostly of protein fibers, with protein receptors needed for sperm binding, binding to sperm plasma membrane receptors. The species-specificity between these receptors contributes to prevention of breeding between different species [Wikipedia]. A protective layer around the egg[FBbt]." [Wikipedia:Vitelline_membrane]
comment: TODO - consider GO CC request. GO:0030704-vitelline membrane formation considered a subclass of CC organization
synonym: "zona pellucida" RELATED []
xref: BTO:0001450
xref: EHDAA2:0002220
xref: FBbt:00000042
xref: GAID:1318
xref: XAO:0000030
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003126
name: trachea
def: "A trachea held open by up to 20 C-shaped rings of cartilage [Wikipedia]. The trachea is the portion of the airway that attaches to the bronchi as it branches [GO:dph]." [GO:0060438, Wikipedia:Vertebrate_trachea]
subset: uberon_slim
synonym: "cartilaginous trachea" EXACT []
synonym: "vertebrate trachea" EXACT SENSU []
synonym: "windpipe" EXACT []
xref: BTO:0001388
xref: EFO:0000935
xref: EHDAA:3078
xref: EHDAA2:0002066
xref: FMA:7394
xref: GAID:361
xref: HOG:0000371
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg
xref: MA:0000441
xref: MAT:0000137
xref: MIAA:0000137
xref: ncithesaurus:Trachea
xref: OpenCyc:Mx4rvViOX5wpEbGdrcN5Y29ycA
xref: XAO:0000118
is_a: UBERON:0001005 ! respiratory airway
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001558 ! lower respiratory tract
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003127
name: open tracheal system trachea
def: "A trachea composed of composed of spiracles, tracheae, and tracheoles [Wikipedia]. An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster." [GO:0007424, Wikipedia:Invertebrate_trachea]
comment: TODO check if is_a epithelium
subset: uberon_slim
synonym: "invertebrate trachea" EXACT []
synonym: "trachea" BROAD SENSU [FBbt:00005043]
xref: EHDAA2:0002066
xref: FBbt:00005043
xref: SPD:0000434
xref: TADS:0000315
is_a: UBERON:0001005 ! respiratory airway
relationship: has_part UBERON:0003914 ! epithelial tube
[Term]
id: UBERON:0003128
name: cranium
def: "Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)]
comment: The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP].
subset: uberon_slim
synonym: "cranial skeleton" RELATED []
synonym: "epicranial plate" RELATED []
synonym: "skeletal system of head" RELATED []
xref: BILA:0000115
xref: BTO:0001295
xref: EFO:0000831
xref: EHDAA:6029
xref: EHDAA2:0000325
xref: FMA:71325
xref: HOG:0000334
xref: MA:0000316
xref: MAT:0000340
xref: MIAA:0000340
xref: NIF_GrossAnatomy:birnlex_1230
xref: OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA
xref: TAO:0000737
xref: XAO:0003075
xref: ZFA:0000737
is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0003129 ! skull
relationship: spatially_disjoint_from UBERON:0001684 ! mandible
[Term]
id: UBERON:0003129
name: skull
def: "Anatomical structure that is part of the head consisting entirely of cranium and mandible." [http://sourceforge.net/tracker/?func=detail&aid=2962656&group_id=76834&atid=1205376, Wikipedia:Skull]
comment: In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP].
subset: uberon_slim
synonym: "cranial skeleton" RELATED []
synonym: "skeletal system of head" RELATED []
xref: AAO:0000109
xref: FMA:46565
xref: GAID:82
xref: galen:Skull
xref: ncithesaurus:Skull
xref: OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
relationship: has_part UBERON:0001684 ! mandible
relationship: has_part UBERON:0003128 ! cranium
relationship: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0005944 ! axial skeleton
[Term]
id: UBERON:0003130
name: arthropod sternum
alt_id: UBERON:FBbt_00004557-FMA_7485-MA_0001331
def: "ventral portion of a segment of an arthropod thorax or abdomen. In insects, the sterna are usually single, large sclerites, and external. However, they can sometimes be divided in two or more, in which case the subunits are called sternites, and may also be modified on the terminal abdominal segments so as to form part of the functional genitalia, in which case they are frequently reduced in size and development, and may become internalized and/or membranous." [Wikipedia:Sternum_(arthropod)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sternum" BROAD []
xref: EHDAA2:0001914
xref: FBbt:00004557
xref: HAO:0000956
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003131
name: arthropod tibia
def: "A section of the arthropod leg." [Wikipedia:Arthropod_leg]
comment: Homologies of leg segments between groups are difficult to prove and are the source of much argument. Some authors posit up to eleven segments per leg for the most recent common ancestor of extant arthropods [1], but modern arthropods have eight or fewer. It has been argued [2][3] that the ancestral leg need not have been so complex, and that other events, such as the successive loss of function of a Hox-gene could result in parallel gains of leg segments.
subset: uberon_slim
xref: FBbt:00004642
xref: HAO:0001017
xref: TADS:0000281
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0005895 ! insect leg
[Term]
id: UBERON:0003132
name: arthropod hypopharynx
def: "A median tonguelike structure arising from the mouth." [http://www.britannica.com/EBchecked/topic/279974/hypopharynx]
subset: uberon_slim
xref: FBbt:00005751
xref: HAO:0000409
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0003133
name: reproductive organ
def: "An organ involved in reproduction" [UBERON:xp]
comment: GO uses genitalia for the singular organ
subset: functional_classification
synonym: "genital organ" EXACT []
synonym: "genitalia" RELATED PLURAL []
synonym: "reproductive system organ" EXACT []
synonym: "sex organ" EXACT []
xref: MA:0001752
xref: OpenCyc:Mx4rwO39aJwpEbGdrcN5Y29ycA
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0003134
name: female reproductive organ
def: "A female organ involved in reproduction" [UBERON:xp]
synonym: "female organism reproductive organ" EXACT [OBOL:automatic]
synonym: "female organism reproductive structure" EXACT [OBOL:automatic]
synonym: "female organism reproductive system organ" EXACT [OBOL:automatic]
synonym: "female organism sex organ" EXACT [OBOL:automatic]
synonym: "female reproductive system organ" EXACT []
synonym: "female sex organ" EXACT []
synonym: "reproductive organ of female organism" EXACT [OBOL:automatic]
synonym: "reproductive structure of female organism" EXACT [OBOL:automatic]
synonym: "reproductive system organ of female organism" EXACT [OBOL:automatic]
synonym: "sex organ of female organism" EXACT [OBOL:automatic]
is_a: UBERON:0003133 ! reproductive organ
relationship: part_of UBERON:0003100
intersection_of: UBERON:0003133 ! reproductive organ
intersection_of: part_of UBERON:0003100 ! female organism
[Term]
id: UBERON:0003135
name: male reproductive organ
def: "A male organ involved in reproduction" [UBERON:xp]
synonym: "male organism reproductive organ" EXACT [OBOL:automatic]
synonym: "male organism reproductive structure" EXACT [OBOL:automatic]
synonym: "male organism reproductive system organ" EXACT [OBOL:automatic]
synonym: "male organism sex organ" EXACT [OBOL:automatic]
synonym: "male reproductive system organ" EXACT []
synonym: "male sex organ" EXACT []
synonym: "reproductive organ of male organism" EXACT [OBOL:automatic]
synonym: "reproductive structure of male organism" EXACT [OBOL:automatic]
synonym: "reproductive system organ of male organism" EXACT [OBOL:automatic]
synonym: "sex organ of male organism" EXACT [OBOL:automatic]
is_a: UBERON:0003133 ! reproductive organ
relationship: part_of UBERON:0003101
intersection_of: UBERON:0003133 ! reproductive organ
intersection_of: part_of UBERON:0003101 ! male organism
[Term]
id: UBERON:0003136
name: tagma
alt_id: UBERON:FBbt_00000002-HAO_0000988
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00000002
xref: HAO:0000988
is_obsolete: true
[Term]
id: UBERON:0003137
name: antennal segment
alt_id: UBERON:FBbt_00000009-HAO_0000104
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00000009
xref: HAO:0000104
is_obsolete: true
[Term]
id: UBERON:0003138
name: thoracic segment
alt_id: UBERON:FBbt_00000016-HAO_0001013
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00000016
xref: HAO:0001013
is_obsolete: true
[Term]
id: UBERON:0003139
name: larval tagma
alt_id: UBERON:FBbt_00001728-HAO_0000462
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00001728
xref: HAO:0000462
is_obsolete: true
[Term]
id: UBERON:0003140
name: larval thorax
alt_id: UBERON:FBbt_00001741-HAO_0000463
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00001741
xref: HAO:0000463
is_obsolete: true
[Term]
id: UBERON:0003141
name: larval abdomen
alt_id: UBERON:FBbt_00001746-HAO_0000460
xref: FBbt:00001746
xref: HAO:0000460
is_obsolete: true
[Term]
id: UBERON:0003142
name: prepupa
alt_id: UBERON:FBbt_00002952-HAO_0000812
synonym: "PP" RELATED [FBbt:00002952]
xref: BTO:0001110
xref: FBbt:00002952
xref: HAO:0000812
is_a: UBERON:0000468 ! multi-cellular organism
relationship: develops_from UBERON:0002548 ! larva
[Term]
id: UBERON:0003143
name: pupa
alt_id: UBERON:FBbt_00002953-HAO_0000886
def: "Organism at the pupal stage. The pupal stage is a life stage of some insects undergoing transformation. The pupal stage is found only in holometabolous insects, those that undergo a complete metamorphosis, going through four life stages; embryo, larva, pupa and imago." [Wikipedia:Pupa]
xref: BTO:0001143
xref: EFO:0002684
xref: FBbt:00002953
xref: HAO:0000886
xref: OpenCyc:Mx4rwQCBr5wpEbGdrcN5Y29ycA
is_a: UBERON:0000468 ! implied link automatically realized ! multi-cellular organism
relationship: existence_starts_and_ends_during UBERON:0000070
intersection_of: UBERON:0000468 ! multi-cellular organism
intersection_of: existence_starts_and_ends_during UBERON:0000070 ! pupal stage
[Term]
id: UBERON:0003144
name: adult tagma
alt_id: UBERON:FBbt_00003005-HAO_0000089
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00003005
xref: HAO:0000089
is_obsolete: true
[Term]
id: UBERON:0003145
name: adult arthropod thorax
alt_id: UBERON:FBbt_00003018-HAO_0000090
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00003018
xref: HAO:0000090
is_obsolete: true
[Term]
id: UBERON:0003146
name: adult arthropod abdomen
alt_id: UBERON:FBbt_00003023-HAO_0000088
xref: FBbt:00003023
xref: HAO:0000088
is_obsolete: true
[Term]
id: UBERON:0003147
name: peritreme
alt_id: UBERON:FBbt_00003121-HAO_0000712
def: "That part of the integument of an insect which surrounds the spiracles." [http://www.answers.com/topic/peritreme]
comment: arthropod specific groupings belong in separate ontology. term also used for edge of the aperture of a univalve shell
synonym: "rim" RELATED [FBbt:00003121]
xref: FBbt:00003121
xref: HAO:0000712
is_obsolete: true
[Term]
id: UBERON:0003148
name: sclerite
alt_id: UBERON:FBbt_00004475-HAO_0000909
def: "hardened portions of arthropod exoskeletons." [Wikipedia:Sclerite]
comment: arthropod specific groupings belong in separate ontology
synonym: "plate" RELATED [FBbt:00004475]
xref: FBbt:00004475
xref: HAO:0000909
is_obsolete: true
[Term]
id: UBERON:0003149
name: tergite
alt_id: UBERON:FBbt_00004476-HAO_0001005
comment: arthropod specific groupings belong in separate ontology
synonym: "abdominal tergite" EXACT [FBbt:00004476]
xref: FBbt:00004476
xref: HAO:0001005
is_obsolete: true
[Term]
id: UBERON:0003150
name: sternite
alt_id: UBERON:FBbt_00004477-HAO_0000955
comment: arthropod specific groupings belong in separate ontology
synonym: "abdominal sternite" EXACT [FBbt:00004477]
xref: FBbt:00004477
xref: HAO:0000955
is_obsolete: true
[Term]
id: UBERON:0003151
name: foramen
alt_id: UBERON:FBbt_00004478-HAO_0000345
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004478
xref: HAO:0000345
is_obsolete: true
[Term]
id: UBERON:0003152
name: phragma
alt_id: UBERON:FBbt_00004480-HAO_0000716
def: "The lamella that serves as the site of attachment of the longitudinal flight muscle [HAO]." [HAO:0000716]
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004480
xref: HAO:0000716
is_obsolete: true
[Term]
id: UBERON:0003153
name: head capsule
alt_id: UBERON:FBbt_00004482-HAO_0000398
xref: EFO:0001927
xref: FBbt:00004482
xref: HAO:0000398
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003154
name: gena
alt_id: UBERON:FBbt_00004491-HAO_0000371
comment: arthropod specific groupings belong in separate ontology
synonym: "cheek" RELATED [FBbt:00004491]
xref: FBbt:00004491
xref: HAO:0000371
is_obsolete: true
[Term]
id: UBERON:0003155
name: arthropod occiput
alt_id: UBERON:FBbt_00004492-HAO_0000658
comment: arthropod specific groupings belong in separate ontology, but this is retained for disambiguation purposes
synonym: "occiput" RELATED SENSU [FBbt:00004492]
xref: FBbt:00004492
xref: HAO:0000658
xref: TGMA:0000041
is_a: UBERON:0006056 ! posterior surface of head
disjoint_from: UBERON:0006054 ! surface of occiput
[Term]
id: UBERON:0003156
name: postocciput
alt_id: UBERON:FBbt_00004494-HAO_0000790
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004494
xref: HAO:0000790
is_obsolete: true
[Term]
id: UBERON:0003157
name: postgena
alt_id: UBERON:FBbt_00004496-HAO_0000776
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004496
xref: HAO:0000776
is_obsolete: true
[Term]
id: UBERON:0003158
name: tentorial pit
alt_id: UBERON:FBbt_00004501-HAO_0000999
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004501
xref: HAO:0000999
is_obsolete: true
[Term]
id: UBERON:0003159
name: anterior tentorial pit
alt_id: UBERON:FBbt_00004502-HAO_0000126
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004502
xref: HAO:0000126
is_obsolete: true
[Term]
id: UBERON:0003160
name: posterior tentorial pit
alt_id: UBERON:FBbt_00004503-HAO_0000768
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004503
xref: HAO:0000768
is_obsolete: true
[Term]
id: UBERON:0003161
name: dorsal ocellus
alt_id: UBERON:FBbt_00004505-HAO_0000661
def: "A simple visual organ of insects[GO]. Two ocelli appear on the vertical and one on the frontal plate[FBbt]. The multi-tissue structure that is located on the top of the head, composed of the corneal lens, pigment cell, rhabdoms and synaptic plexus[HAO]. Two evolutionary distinct ocellus types exist [2]: dorsal ocelli (or simply 'ocelli'), found in most insects, and lateral ocelli (or stemmata), which are found in the larvae of some insect orders. They are structurally and functionally very different. Simple eyes of other animals, e.g. cnidarians may also be referred to as 'ocelli', but again the structure and anatomy of these eyes is quite distinct from those of the dorsal ocelli of insects[Wikipedia]." [FBbt:00004505, GO:0008056, HAO:0000661, Wikipedia:Ocellus#Ocelli]
synonym: "dorsal ocelli" RELATED PLURAL []
synonym: "ocelli" RELATED PLURAL []
synonym: "ocellus" EXACT []
xref: BTO:0001758
xref: FBbt:00004505
xref: HAO:0000661
is_a: UBERON:0000963 ! head sensillum
[Term]
id: UBERON:0003162
name: lateral ocellus
alt_id: UBERON:FBbt_00004506-HAO_0000481
def: "The ocellus that is paired[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000481, Wikipedia:Ocellus#Ocelli]
xref: FBbt:00004506
xref: HAO:0000481
is_a: UBERON:0003161 ! dorsal ocellus
[Term]
id: UBERON:0003163
name: mouthpart
alt_id: UBERON:FBbt_00004520-HAO_0000639
comment: TODO
xref: FBbt:00004520
xref: HAO:0000639
is_obsolete: true
[Term]
id: UBERON:0003164
name: clypeus
alt_id: UBERON:FBbt_00004521-HAO_0000212
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004521
xref: HAO:0000212
is_obsolete: true
[Term]
id: UBERON:0003165
name: cibarium
alt_id: UBERON:FBbt_00004526-HAO_0000201
comment: arthropod specific groupings belong in separate ontology
synonym: "atrium" RELATED [FBbt:00004526]
xref: FBbt:00004526
xref: HAO:0000201
is_obsolete: true
[Term]
id: UBERON:0003166
name: prementum
alt_id: UBERON:FBbt_00004534-HAO_0000804
comment: arthropod specific groupings belong in separate ontology
synonym: "theca" RELATED [FBbt:00004534]
xref: FBbt:00004534
xref: HAO:0000804
is_obsolete: true
[Term]
id: UBERON:0003167
name: lacinia
alt_id: UBERON:FBbt_00004536-HAO_0000457
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004536
xref: HAO:0000457
is_obsolete: true
[Term]
id: UBERON:0003168
name: mentum
alt_id: UBERON:FBbt_00004544-HAO_0000534
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004544
xref: HAO:0000534
is_obsolete: true
[Term]
id: UBERON:0003169
name: cervical sclerite
alt_id: UBERON:FBbt_00004548-HAO_0000195
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004548
xref: HAO:0000195
is_obsolete: true
[Term]
id: UBERON:0003170
name: tergum
alt_id: UBERON:FBbt_00004552-HAO_0001006
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004552
xref: HAO:0001006
is_obsolete: true
[Term]
id: UBERON:0003171
name: episternum
alt_id: UBERON:FBbt_00004554-HAO_0000303
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004554
xref: HAO:0000303
is_obsolete: true
[Term]
id: UBERON:0003172
name: epimeron
alt_id: UBERON:FBbt_00004556-HAO_0000299
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004556
xref: HAO:0000299
is_obsolete: true
[Term]
id: UBERON:0003173
name: pronotum
alt_id: UBERON:FBbt_00004561-HAO_0000853
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004561
xref: HAO:0000853
is_obsolete: true
[Term]
id: UBERON:0003174
name: furcasternum
alt_id: UBERON:FBbt_00004570-HAO_0000367
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004570
xref: HAO:0000367
is_obsolete: true
[Term]
id: UBERON:0003175
name: prescutum
alt_id: UBERON:FBbt_00004582-HAO_0000815
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004582
xref: HAO:0000815
is_obsolete: true
[Term]
id: UBERON:0003176
name: anterior notal wing process
alt_id: UBERON:FBbt_00004585-HAO_0000120
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004585
xref: HAO:0000120
is_obsolete: true
[Term]
id: UBERON:0003177
name: posterior notal wing process
alt_id: UBERON:FBbt_00004586-HAO_0000758
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004586
xref: HAO:0000758
is_obsolete: true
[Term]
id: UBERON:0003178
name: postnotum
alt_id: UBERON:FBbt_00004588-HAO_0000786
comment: arthropod specific groupings belong in separate ontology
synonym: "postscutellum" RELATED [FBbt:00004588]
xref: FBbt:00004588
xref: HAO:0000786
is_obsolete: true
[Term]
id: UBERON:0003179
name: pleural wing process
alt_id: UBERON:FBbt_00004595-HAO_0000726
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004595
xref: HAO:0000726
is_obsolete: true
[Term]
id: UBERON:0003180
name: anepisternum
alt_id: UBERON:FBbt_00004597-HAO_0000094
comment: arthropod specific groupings belong in separate ontology
synonym: "mesopleurite" RELATED [FBbt:00004597]
xref: FBbt:00004597
xref: HAO:0000094
is_obsolete: true
[Term]
id: UBERON:0003181
name: scutoscutellar suture
alt_id: UBERON:FBbt_00004601-HAO_0000920
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004601
xref: HAO:0000920
is_obsolete: true
[Term]
id: UBERON:0003182
name: pleural suture
alt_id: UBERON:FBbt_00004603-HAO_0000725
xref: FBbt:00004603
xref: HAO:0000725
is_obsolete: true
[Term]
id: UBERON:0003183
name: notopleural suture
alt_id: UBERON:FBbt_00004604-HAO_0000649
xref: FBbt:00004604
xref: HAO:0000649
is_obsolete: true
[Term]
id: UBERON:0003184
name: mesofurca
alt_id: UBERON:FBbt_00004619-HAO_0000547
comment: arthropod specific groupings belong in separate ontology
synonym: "mesothoracic sternal apophysis" RELATED [FBbt:00004619]
xref: FBbt:00004619
xref: HAO:0000547
is_obsolete: true
[Term]
id: UBERON:0003185
name: metafurca
alt_id: UBERON:FBbt_00004638-HAO_0000592
comment: arthropod specific groupings belong in separate ontology
synonym: "metathoracic sternal apophysis" RELATED [FBbt:00004638]
xref: FBbt:00004638
xref: HAO:0000592
is_obsolete: true
[Term]
id: UBERON:0003186
name: coxa
alt_id: UBERON:FBbt_00004641-HAO_0000228
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004641
xref: HAO:0000228
is_obsolete: true
[Term]
id: UBERON:0003187
name: pretarsus
alt_id: UBERON:FBbt_00004653-HAO_0000820
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004653
xref: HAO:0000820
is_obsolete: true
[Term]
id: UBERON:0003188
name: auxilia
alt_id: UBERON:FBbt_00004654-HAO_0000153
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004654
xref: HAO:0000153
is_obsolete: true
[Term]
id: UBERON:0003189
name: unguitractor plate
alt_id: UBERON:FBbt_00004658-HAO_0001043
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004658
xref: HAO:0001043
is_obsolete: true
[Term]
id: UBERON:0003190
name: empodium
alt_id: UBERON:FBbt_00004659-HAO_0000288
xref: FBbt:00004659
xref: HAO:0000288
is_obsolete: true
[Term]
id: UBERON:0003191
name: tegula
alt_id: UBERON:FBbt_00004730-HAO_0000993
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004730
xref: HAO:0000993
is_obsolete: true
[Term]
id: UBERON:0003192
name: axillary sclerite
alt_id: UBERON:FBbt_00004737-HAO_0000159
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004737
xref: HAO:0000159
is_obsolete: true
[Term]
id: UBERON:0003193
name: axillary cord
alt_id: UBERON:FBbt_00004744-HAO_0000157
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004744
xref: HAO:0000157
is_obsolete: true
[Term]
id: UBERON:0003194
name: imaginal disc-derived wing vein
alt_id: UBERON:FBbt_00004751-HAO_0001095
xref: FBbt:00004751
xref: HAO:0001095
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: part_of UBERON:0000984 ! imaginal disc-derived wing
[Term]
id: UBERON:0003195
name: crossvein
alt_id: UBERON:FBbt_00004765-HAO_0000236
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004765
xref: HAO:0000236
is_obsolete: true
[Term]
id: UBERON:0003196
name: wing cell
alt_id: UBERON:FBbt_00004769-HAO_0001091
comment: arthropod specific groupings belong in separate ontology
synonym: "intervein" RELATED [FBbt:00004769]
xref: FBbt:00004769
xref: HAO:0001091
is_obsolete: true
[Term]
id: UBERON:0003197
name: costal cell
alt_id: UBERON:FBbt_00004770-HAO_0000226
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004770
xref: HAO:0000226
is_obsolete: true
[Term]
id: UBERON:0003198
name: aedeagus
alt_id: UBERON:FBbt_00004850-HAO_0000091
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00004850
xref: HAO:0000091
is_obsolete: true
[Term]
id: UBERON:0003199
name: egg chamber
alt_id: UBERON:FBbt_00004894-HAO_0000287
synonym: "follicle" RELATED [FBbt:00004894]
synonym: "germarium derived egg chamber" EXACT [FBbt:00004894]
xref: FBbt:00004894
xref: HAO:0000287
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0003200
name: pedicel
alt_id: UBERON:FBbt_00004920-HAO_0000706
xref: FBbt:00004920
xref: HAO:0000706
is_obsolete: true
[Term]
id: UBERON:0003201
name: exocuticle
alt_id: UBERON:FBbt_00004973-HAO_0000311
def: "The outer layer of the procuticle of certain crustaceans and arthropods, which contains cuticulin, chitin, and phenolic substances that are oxidized to produce the dark pigment of the cuticle;nThe hard and usually darkened layer of the cuticle lying between the endocuticle and epicuticle." [BTO:0001602]
xref: BTO:0001602
xref: FBbt:00004973
xref: HAO:0000311
is_a: UBERON:0000476 ! acellular anatomical structure
[Term]
id: UBERON:0003202
name: endocuticle
alt_id: UBERON:FBbt_00004974-HAO_0000290
def: "The inner layer of the procuticle in certain crustaceans and arthropods, which is almost entirely composed of protein and chitin." [BTO:0001603]
xref: BTO:0001603
xref: FBbt:00004974
xref: HAO:0000290
is_a: UBERON:0000476 ! acellular anatomical structure
[Term]
id: UBERON:0003203
name: apodeme
alt_id: UBERON:FBbt_00005091-HAO_0000142
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00005091
xref: HAO:0000142
is_obsolete: true
[Term]
id: UBERON:0003204
name: epipharynx
alt_id: UBERON:FBbt_00005750-HAO_0000301
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00005750
xref: HAO:0000301
is_obsolete: true
[Term]
id: UBERON:0003205
name: articulation
alt_id: UBERON:FBbt_00005811-HAO_0000151
comment: incorrect grouping
xref: FBbt:00005811
xref: HAO:0000151
xref: ncithesaurus:Articulation
is_obsolete: true
[Term]
id: UBERON:0003206
name: apophysis
alt_id: UBERON:FBbt_00005813-HAO_0000143
comment: incorrect grouping
xref: FBbt:00005813
xref: FMA:75428
xref: HAO:0000143
is_obsolete: true
[Term]
id: UBERON:0003207
name: appendage segment
alt_id: UBERON:FBbt_00007018-HAO_0000145
comment: arthropod specific groupings belong in separate ontology
xref: FBbt:00007018
xref: HAO:0000145
is_obsolete: true
[Term]
id: UBERON:0003209
name: blood nerve barrier
def: "barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO]." [GO:0008065, Wikipedia:Blood-nerve_barrier]
synonym: "blood-nerve barrier" EXACT []
is_a: UBERON:0000119 ! cell layer
relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid
relationship: adjacent_to UBERON:0001021 ! nerve
[Term]
id: UBERON:0003210
name: blood-cerebrospinal fluid barrier
def: "barrier in the choroid plexus located in the lateral, third, and fourth brain ventricles that controls the entrance of substances into the cerebrospinal fluid from the blood[MP]." [MP:0006088]
is_a: UBERON:0000119 ! cell layer
relationship: adjacent_to UBERON:0000178 ! blood
relationship: adjacent_to UBERON:0001359 ! cerebrospinal fluid
[Term]
id: UBERON:0003211
name: median ocellus
def: "The ocellus that is is located medially on the cranium[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000526, Wikipedia:Ocellus#Ocelli]
xref: FBbt:00004507
xref: HAO:0000526
is_a: UBERON:0003161 ! dorsal ocellus
[Term]
id: UBERON:0003212
name: gustatory organ
def: "An organ that is part of a gustatory system [Obol]." [OBOL:automatic]
synonym: "gustatory organ system organ" EXACT [OBOL:automatic]
synonym: "gustatory system organ" EXACT [OBOL:automatic]
synonym: "organ of gustatory organ system" EXACT [OBOL:automatic]
synonym: "organ of gustatory system" EXACT [OBOL:automatic]
synonym: "organ of taste system" EXACT [OBOL:automatic]
synonym: "taste organ" EXACT []
synonym: "taste system organ" EXACT [OBOL:automatic]
xref: FBbt:00005159
xref: FMA:77853
is_a: UBERON:0000005 ! chemosensory organ
relationship: part_of UBERON:0001033
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0001033 ! gustatory system
relationship: part_of UBERON:0001033 ! gustatory system
[Term]
id: UBERON:0003213
name: cranial ganglion
alt_id: UBERON:MA_0000184-MA_0000214-MIAA_0000200-WBbt_0005135-ZFA_0000013
def: "Ganglion which is located in the head." [ZFIN:curator]
subset: uberon_slim
synonym: "cranial ganglia" RELATED []
synonym: "cranial ganglion" EXACT []
synonym: "head ganglion" RELATED []
xref: BTO:0000106
xref: EFO:0000902
xref: HOG:0000076
xref: MA:0000214
xref: MAT:0000200
xref: MIAA:0000200
xref: TAO:0000013
xref: XAO:0000027
xref: ZFA:0000013
is_a: UBERON:0000045 ! ganglion
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003214
name: mammary gland alveolus
def: "a sac-like structure that is found in the mature gland[GO]." [GO:0060749]
synonym: "alveolus of lactiferous gland" EXACT [OBOL:automatic]
synonym: "alveolus of lobe of breast" EXACT [OBOL:automatic]
synonym: "alveolus of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "alveolus of mammary gland" EXACT [OBOL:automatic]
synonym: "lactiferous alveolus" EXACT []
synonym: "lactiferous gland alveolus" EXACT []
synonym: "lobe of breast alveolus" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland alveolus" EXACT [OBOL:automatic]
synonym: "mammary alveolus" EXACT []
xref: FMA:73285
xref: MA:0002760
is_a: UBERON:0003215 ! alveolus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001911
intersection_of: UBERON:0003215 ! alveolus
intersection_of: part_of UBERON:0001911 ! mammary gland
relationship: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0003215
name: alveolus
def: "organ part that has the form of a hollow cavity[WP]." [Wikipedia:Alveolus]
xref: EFO:0002513
xref: FMA:82493
xref: ncithesaurus:Alveolus
xref: OpenCyc:Mx4rwN8NFZwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0003216
name: hard palate
alt_id: UBERON:FMA_54549-FMA_55023-MA_0002476-MA_0002477-MIAA_0000161
def: "anterior portion of the palate consisting of bone and mucous membranes[GO]." [GO:0060022, Wikipedia:Hard_palate]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hard palate" EXACT []
xref: EMAPA:18952
xref: FMA:55023
xref: GAID:221
xref: MA:0002477
xref: MAT:0000161
xref: MIAA:0000161
xref: ncithesaurus:Hard_Palate
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001716 ! palate
[Term]
id: UBERON:0003217
name: neural lobe of neurohypophysis
alt_id: UBERON:FMA_74636-ZFA_0001271
def: "The posterior pituitary (or neurohypophysis) comprises the posterior lobe of the pituitary gland and is part of the endocrine system. Despite its name, the posterior pituitary gland is not a gland, per se; rather, it is largely a collection of axonal projections from the hypothalamus that terminate behind the anterior pituitary gland. [WP,unvetted]." [Wikipedia:Neurohypophysis]
comment: TODO - compare with UBERON:0002198
subset: uberon_slim
synonym: "pars nervosa of hypophysis" EXACT []
synonym: "pars nervosa of neurohypophysis" EXACT []
synonym: "pars nervosa of posterior lobe of pituitary gland" EXACT []
synonym: "posterior lobe-3" EXACT []
xref: FMA:74636
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Pituitary_gland_representation.PNG/200px-Pituitary_gland_representation.PNG
xref: NIF_GrossAnatomy:birnlex_941
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0002198 ! neurohypophysis
[Term]
id: UBERON:0003218
name: ovary septum
def: "Septum that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s)[GO]." [GO:0080126, Wikipedia:Septum]
is_a: UBERON:0003037 ! septum
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000992 ! ovary
[Term]
id: UBERON:0003219
name: shell septum
def: "Septum that divides the internal chambers (camerae) of the shell of a cephalopod, namely nautiloids or ammonoids." [GO:0080126, Wikipedia:Septum_(marine_biology)]
is_a: UBERON:0003037 ! septum
[Term]
id: UBERON:0003220
name: metanephric blastema
def: "one of the two embryological structures that give rise to the kidney (the other is the ureteric bud). The metanephric blastema mostly develops into nephrons, but can also form parts of the collecting duct system.[WP]. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros[GO]" [GO:0072075, Wikipedia:Metanephric_blastema]
comment: (TODO - split?) Genes: The positional specification of the metanephrogenic mesenchyme is negatively regulated by Foxc1 and Foxc2. Next the permanent kidney forming metanephrogenic mesenchyme is specified by Hox11 genes. The competence to respond to ureteric bud inducers is regulated by WT1. GDNF secretion restricted to posterior region by Robo2 and Sprouty1. The receptors for GDNF are synthesized in the nephric ducts and later in ureteric buds [ISBN:9780878932504 "Developmental Biology"]
synonym: "metanephric mesenchyme" EXACT [Wikipedia:Metanephric_blastema]
synonym: "metanephric mesoderm" EXACT [Wikipedia:Metanephric_blastema]
synonym: "metanephrogenic mesenchyme" EXACT [EHDAA:5021]
synonym: "metanephros associated mesenchyme" EXACT [EHDAA2:0001139]
xref: EHDAA:4041
xref: EHDAA:5021
xref: EHDAA:5915
xref: EHDAA2:0001139
xref: EMAPA:17208
xref: EMAPA:17375
xref: EMAPA:29990
xref: HOG:0000540
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0003313 ! implied link automatically realized ! mesenchyme of embryo
relationship: develops_from UBERON:0003074 ! mesonephric duct
[Term]
id: UBERON:0003221
name: phalanx
def: "Long bones of fingers and toes[Obol]. In primates such as humans and monkeys, the thumb and big toe have two phalanges, while the other fingers and toes consist of three[WP]." [Wikipedia:Phalanx_bones]
synonym: "digit long bone" EXACT [OBOL:automatic]
synonym: "long bone of digit" EXACT [OBOL:automatic]
synonym: "phalanges" EXACT PLURAL []
xref: galen:Phalanx
xref: MA:0000304
xref: ncithesaurus:Phalanx
xref: OpenCyc:Mx4rvolPZpwpEbGdrcN5Y29ycA
is_a: UBERON:0002495 ! long bone
is_a: UBERON:0003606 ! implied link automatically realized ! limb long bone
relationship: part_of UBERON:0002544
intersection_of: UBERON:0002495 ! long bone
intersection_of: part_of UBERON:0002544 ! digit
relationship: part_of UBERON:0002544 ! digit
[Term]
id: UBERON:0003224
name: syncytiotrophoblast of chorion
def: "A syncytiotrophoblast that is part of a chorion [Obol]." [OBOL:automatic]
synonym: "chorion (vertebrates) syncytiotrophoblast" EXACT [OBOL:automatic]
synonym: "chorion syncytiotrophoblast" EXACT [OBOL:automatic]
synonym: "syncytiotrophoblast of chorion (vertebrates)" EXACT [OBOL:automatic]
xref: EHDAA:156
xref: EHDAA2:0001973
is_a: UBERON:0000371 ! implied link automatically realized ! syncytiotrophoblast
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0003124
intersection_of: UBERON:0000371 ! syncytiotrophoblast
intersection_of: part_of UBERON:0003124 ! chorion
[Term]
id: UBERON:0003225
name: primitive endoderm of inner cell mass
def: "A primitive endoderm that is part of a inner cell mass [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "inner cell mass primitive endoderm" EXACT [OBOL:automatic]
xref: EHDAA:44
is_a: UBERON:0000417 ! implied link automatically realized ! primitive endoderm
relationship: part_of UBERON:0000087
intersection_of: UBERON:0000417 ! primitive endoderm
intersection_of: part_of UBERON:0000087 ! inner cell mass
[Term]
id: UBERON:0003229
name: epithelium of elbow
def: "An epithelium that is part of a elbow [Obol]." [OBOL:automatic]
synonym: "cubital region epithelial tissue" EXACT [OBOL:automatic]
synonym: "cubital region epithelium" EXACT [OBOL:automatic]
synonym: "elbow epithelial tissue" EXACT [OBOL:automatic]
synonym: "elbow epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cubital region" EXACT [OBOL:automatic]
synonym: "epithelial tissue of elbow" EXACT [OBOL:automatic]
synonym: "epithelium of cubital region" EXACT [OBOL:automatic]
xref: EHDAA:4168
xref: EHDAA:6214
xref: EHDAA2:0000430
xref: HOG:0001044
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0001461
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001461 ! elbow
[Term]
id: UBERON:0003230
name: epithelium of carpal region
def: "An epithelium that is part of a wrist [Obol]." [OBOL:automatic]
synonym: "carpal region epithelial tissue" EXACT [OBOL:automatic]
synonym: "carpal region epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of carpal region" EXACT [OBOL:automatic]
synonym: "epithelial tissue of wrist" EXACT [OBOL:automatic]
synonym: "epithelium of wrist" EXACT [OBOL:automatic]
synonym: "wrist epithelial tissue" EXACT [OBOL:automatic]
synonym: "wrist epithelium" EXACT [OBOL:automatic]
xref: EHDAA:5198
xref: EHDAA2:0000219
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0001462
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0003231
name: epithelium of hip
def: "An epithelium that is part of a hip [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of hip" EXACT [OBOL:automatic]
synonym: "epithelial tissue of hip region" EXACT [OBOL:automatic]
synonym: "epithelial tissue of regio coxae" EXACT [OBOL:automatic]
synonym: "epithelium of hip region" EXACT [OBOL:automatic]
synonym: "epithelium of regio coxae" EXACT [OBOL:automatic]
synonym: "hip epithelial tissue" EXACT [OBOL:automatic]
synonym: "hip epithelium" EXACT [OBOL:automatic]
synonym: "hip region epithelial tissue" EXACT [OBOL:automatic]
synonym: "hip region epithelium" EXACT [OBOL:automatic]
synonym: "regio coxae epithelial tissue" EXACT [OBOL:automatic]
synonym: "regio coxae epithelium" EXACT [OBOL:automatic]
xref: EHDAA:5155
xref: EHDAA:6180
xref: EHDAA2:0000784
xref: HOG:0000779
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001464
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0003232
name: epithelium of knee
def: "An epithelium that is part of a knee [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of knee" EXACT [OBOL:automatic]
synonym: "knee epithelial tissue" EXACT [OBOL:automatic]
synonym: "knee epithelium" EXACT [OBOL:automatic]
xref: EHDAA:5161
xref: EHDAA:6186
xref: EHDAA2:0000896
xref: HOG:0000810
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0001465
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0003233
name: epithelium of shoulder
def: "An epithelium that is part of a shoulder [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of shoulder" EXACT [OBOL:automatic]
synonym: "shoulder epithelial tissue" EXACT [OBOL:automatic]
synonym: "shoulder epithelium" EXACT [OBOL:automatic]
xref: EHDAA:4182
xref: EHDAA:6230
xref: EHDAA2:0001835
xref: HOG:0000761
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001467
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003235
name: epithelium of upper jaw
def: "An epithelium that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "epithelial tissue of upper jaw" EXACT [OBOL:automatic]
synonym: "epithelium of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch epithelial tissue" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch epithelium" EXACT [OBOL:automatic]
synonym: "upper jaw epithelial tissue" EXACT [OBOL:automatic]
synonym: "upper jaw epithelium" EXACT [OBOL:automatic]
xref: EHDAA:8027
xref: EHDAA2:0002119
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001709
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0003236
name: epithelium of lower jaw
def: "An epithelium that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of lower jaw" EXACT [OBOL:automatic]
synonym: "epithelial tissue of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "epithelium of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "lower jaw epithelial tissue" EXACT [OBOL:automatic]
synonym: "lower jaw epithelium" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch epithelial tissue" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch epithelium" EXACT [OBOL:automatic]
xref: EHDAA:7999
xref: EHDAA2:0001019
xref: HOG:0000802
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001710
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0003238
name: epithelium of superior semicircular canal
def: "An epithelium that is part of an anterior semicircular canal [Obol]." [OBOL:automatic]
synonym: "anterior semicircular canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "anterior semicircular canal epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of anterior semicircular canal" EXACT [OBOL:automatic]
synonym: "epithelial tissue of superior semicircular canal" EXACT [OBOL:automatic]
synonym: "epithelium of anterior semicircular canal" EXACT [OBOL:automatic]
synonym: "superior semicircular canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "superior semicircular canal epithelium" EXACT [OBOL:automatic]
xref: EHDAA:7806
xref: EHDAA2:0001961
xref: HOG:0001039
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001841
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001841 ! anterior semicircular canal
[Term]
id: UBERON:0003239
name: epithelium of posterior semicircular canal
def: "An epithelium that is part of a posterior semicircular canal [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of posterior semicircular canal" EXACT [OBOL:automatic]
synonym: "posterior semicircular canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "posterior semicircular canal epithelium" EXACT [OBOL:automatic]
xref: EHDAA:7800
xref: EHDAA2:0001491
xref: HOG:0000758
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001842
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001842 ! posterior semicircular canal
[Term]
id: UBERON:0003240
name: epithelium of lateral semicircular canal
def: "An epithelium that is part of a lateral semicircular canal [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of lateral semicircular canal" EXACT [OBOL:automatic]
synonym: "lateral semicircular canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "lateral semicircular canal epithelium" EXACT [OBOL:automatic]
xref: EHDAA:7794
xref: EHDAA2:0000922
xref: HOG:0000480
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001843
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001843 ! lateral semicircular canal
[Term]
id: UBERON:0003241
name: epithelium of utricle
def: "An epithelium that is part of a utricle of membranous labyrinth [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of membranous labyrinth utricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of utricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of utricle of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelial tissue of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "epithelium of membranous labyrinth utricle" EXACT [OBOL:automatic]
synonym: "epithelium of utricle of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelium of utriculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "membranous labyrinth utricle epithelial tissue" EXACT [OBOL:automatic]
synonym: "membranous labyrinth utricle epithelium" EXACT [OBOL:automatic]
synonym: "utricle epithelial tissue" EXACT [OBOL:automatic]
synonym: "utricle epithelium" EXACT [OBOL:automatic]
synonym: "utricle of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic]
synonym: "utricle of membranous labyrinth epithelium" EXACT [OBOL:automatic]
synonym: "utriculus (labyrinthus vestibularis) epithelial tissue" EXACT [OBOL:automatic]
synonym: "utriculus (labyrinthus vestibularis) epithelium" EXACT [OBOL:automatic]
xref: EHDAA:4730
xref: EHDAA2:0002155
xref: HOG:0000634
xref: MA:0001204
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0001853
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001853 ! utricle of membranous labyrinth
[Term]
id: UBERON:0003242
name: epithelium of saccule
def: "An epithelium that is part of a saccule of membranous labyrinth [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of membranous labyrinth saccule" EXACT [OBOL:automatic]
synonym: "epithelial tissue of saccule" EXACT [OBOL:automatic]
synonym: "epithelial tissue of saccule of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelial tissue of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "epithelium of membranous labyrinth saccule" EXACT [OBOL:automatic]
synonym: "epithelium of saccule of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelium of sacculus (labyrinthus vestibularis)" EXACT [OBOL:automatic]
synonym: "membranous labyrinth saccule epithelial tissue" EXACT [OBOL:automatic]
synonym: "membranous labyrinth saccule epithelium" EXACT [OBOL:automatic]
synonym: "saccule epithelial tissue" EXACT [OBOL:automatic]
synonym: "saccule epithelium" EXACT [OBOL:automatic]
synonym: "saccule of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic]
synonym: "saccule of membranous labyrinth epithelium" EXACT [OBOL:automatic]
synonym: "sacculus (labyrinthus vestibularis) epithelial tissue" EXACT [OBOL:automatic]
synonym: "sacculus (labyrinthus vestibularis) epithelium" EXACT [OBOL:automatic]
xref: EHDAA:4724
xref: EHDAA2:0001771
xref: HOG:0000633
xref: MA:0001202
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0001854
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001854 ! saccule of membranous labyrinth
[Term]
id: UBERON:0003243
name: epithelium of cochlear duct
def: "An epithelium that is part of a cochlear duct of membranous labyrinth [Obol]." [OBOL:automatic]
synonym: "cochlear duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "cochlear duct epithelium" EXACT [OBOL:automatic]
synonym: "cochlear duct of membranous labyrinth epithelial tissue" EXACT [OBOL:automatic]
synonym: "cochlear duct of membranous labyrinth epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cochlear duct" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cochlear duct of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelial tissue of Reissner's canal" EXACT [OBOL:automatic]
synonym: "epithelium of cochlear duct of membranous labyrinth" EXACT [OBOL:automatic]
synonym: "epithelium of Reissner's canal" EXACT [OBOL:automatic]
synonym: "Reissner's canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "Reissner's canal epithelium" EXACT [OBOL:automatic]
xref: EHDAA:4722
xref: EHDAA2:0000264
xref: HOG:0000640
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001855
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0003244
name: epithelium of mammary gland
def: "An epithelium that is part of a lactiferous gland [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of lactiferous gland" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lobe of breast" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "epithelial tissue of mammary gland" EXACT [OBOL:automatic]
synonym: "epithelium of lactiferous gland" EXACT [OBOL:automatic]
synonym: "epithelium of lobe of breast" EXACT [OBOL:automatic]
synonym: "epithelium of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "lactiferous gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "lactiferous gland epithelium" EXACT [OBOL:automatic]
synonym: "lobe of breast epithelial tissue" EXACT [OBOL:automatic]
synonym: "lobe of breast epithelium" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland epithelium" EXACT [OBOL:automatic]
synonym: "mammary gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "mammary gland epithelium" EXACT [OBOL:automatic]
xref: EHDAA:6526
xref: EHDAA2:0001057
xref: FMA:74445
xref: HOG:0001088
xref: MA:0000792
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001911
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0003246
name: epithelium of endolymphatic sac
def: "An epithelium that is part of a endolymphatic sac [Obol]." [OBOL:automatic]
synonym: "endolymphatic sac epithelial tissue" EXACT [OBOL:automatic]
synonym: "endolymphatic sac epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of endolymphatic sac" EXACT [OBOL:automatic]
xref: EHDAA:7765
xref: EHDAA2:0000443
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0002223
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002223 ! endolymphatic sac
[Term]
id: UBERON:0003247
name: epithelium of forearm
def: "An epithelium that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "antebrachial region epithelial tissue" EXACT [OBOL:automatic]
synonym: "antebrachial region epithelium" EXACT [OBOL:automatic]
synonym: "arm middle limb segment epithelial tissue" EXACT [OBOL:automatic]
synonym: "arm middle limb segment epithelium" EXACT [OBOL:automatic]
synonym: "arm zeugopod epithelial tissue" EXACT [OBOL:automatic]
synonym: "arm zeugopod epithelium" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment epithelial tissue" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment epithelium" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod epithelial tissue" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of antebrachial region" EXACT [OBOL:automatic]
synonym: "epithelial tissue of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "epithelial tissue of arm zeugopod" EXACT [OBOL:automatic]
synonym: "epithelial tissue of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "epithelial tissue of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "epithelial tissue of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lower arm" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lower segment of arm" EXACT [OBOL:automatic]
synonym: "epithelial tissue of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "epithelial tissue of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "epithelial tissue of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "epithelial tissue of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "epithelial tissue of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "epithelial tissue of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "epithelial tissue of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "epithelial tissue of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "epithelium of antebrachial region" EXACT [OBOL:automatic]
synonym: "epithelium of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "epithelium of arm zeugopod" EXACT [OBOL:automatic]
synonym: "epithelium of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "epithelium of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "epithelium of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "epithelium of lower arm" EXACT [OBOL:automatic]
synonym: "epithelium of lower segment of arm" EXACT [OBOL:automatic]
synonym: "epithelium of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "epithelium of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "epithelium of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "epithelium of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "epithelium of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "epithelium of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "epithelium of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "epithelium of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb epithelial tissue" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb epithelium" EXACT [OBOL:automatic]
synonym: "lower arm epithelial tissue" EXACT [OBOL:automatic]
synonym: "lower arm epithelium" EXACT [OBOL:automatic]
synonym: "lower segment of arm epithelial tissue" EXACT [OBOL:automatic]
synonym: "lower segment of arm epithelium" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm epithelial tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm epithelium" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region epithelial tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region epithelium" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb epithelial tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb epithelium" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment epithelial tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment epithelium" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod epithelial tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod epithelium" EXACT [OBOL:automatic]
synonym: "zeugopod of arm epithelial tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of arm epithelium" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region epithelial tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region epithelium" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb epithelial tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb epithelium" EXACT [OBOL:automatic]
xref: EHDAA:4174
xref: EHDAA:6220
xref: EHDAA2:0000554
xref: HOG:0001096
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0002386
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0003248
name: epithelium of footplate
def: "An epithelium that is part of a stapes base [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of footplate" EXACT [OBOL:automatic]
synonym: "epithelial tissue of stapes base" EXACT [OBOL:automatic]
synonym: "epithelium of stapes base" EXACT [OBOL:automatic]
synonym: "footplate epithelial tissue" EXACT [OBOL:automatic]
synonym: "footplate epithelium" EXACT [OBOL:automatic]
synonym: "stapes base epithelial tissue" EXACT [OBOL:automatic]
synonym: "stapes base epithelium" EXACT [OBOL:automatic]
xref: EHDAA:5145
xref: EHDAA:6144
xref: EHDAA2:0000548
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0002496
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002496 ! stapes base
[Term]
id: UBERON:0003249
name: epithelium of otic placode
def: "An epithelium that is part of a otic placode [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of otic placode" EXACT [OBOL:automatic]
synonym: "otic placode epithelial tissue" EXACT [OBOL:automatic]
synonym: "otic placode epithelium" EXACT [OBOL:automatic]
xref: EHDAA:510
xref: EHDAA2:0001341
xref: HOG:0000636
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0003069
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003069 ! otic placode
[Term]
id: UBERON:0003254
name: ectoderm of amnion
def: "An ectoderm that is part of an amnion [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "amnion ectoderm" EXACT [OBOL:automatic]
xref: EHDAA:138
xref: EHDAA2:0000117
xref: HOG:0000621
is_a: UBERON:0004366 ! implied link automatically realized ! extraembryonic ectoderm
relationship: part_of UBERON:0000305
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0000305 ! amnion
[Term]
id: UBERON:0003255
name: ectoderm of embryo
def: "An ectoderm that is part of a embryo [Obol]." [OBOL:automatic]
synonym: "developmental tissue ectoderm" EXACT [OBOL:automatic]
synonym: "ectoderm of developmental tissue" EXACT [OBOL:automatic]
synonym: "embryo ectoderm" EXACT [OBOL:automatic]
xref: EHDAA:132
is_obsolete: true
[Term]
id: UBERON:0003256
name: endoderm of embryo
def: "An endoderm that is part of a embryo [Obol]." [OBOL:automatic]
synonym: "developmental tissue endoderm" EXACT [OBOL:automatic]
synonym: "embryo endoderm" EXACT [OBOL:automatic]
synonym: "endoderm of developmental tissue" EXACT [OBOL:automatic]
xref: EHDAA:94
is_obsolete: true
[Term]
id: UBERON:0003257
name: endoderm of yolk sac
def: "An endoderm that is part of a yolk sac [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "yolk sac endoderm" EXACT [OBOL:automatic]
xref: EHDAA:166
xref: EHDAA2:0002215
xref: HOG:0000626
is_a: UBERON:0000925 ! implied link automatically realized ! endoderm
relationship: part_of UBERON:0001040
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0003258
name: endoderm of foregut
def: "An endoderm that is part of a foregut [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "foregut endoderm" EXACT [OBOL:automatic]
xref: EHDAA:524
xref: EHDAA2:0000566
is_a: UBERON:0000925 ! implied link automatically realized ! endoderm
relationship: part_of UBERON:0001041
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001041 ! foregut
[Term]
id: UBERON:0003259
name: endoderm of midgut
def: "An endoderm that is part of a midgut [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "midgut endoderm" EXACT [OBOL:automatic]
xref: EHDAA:987
xref: EHDAA2:0001194
xref: HOG:0001080
is_a: UBERON:0000925 ! implied link automatically realized ! endoderm
relationship: part_of UBERON:0001045
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001045 ! midgut
[Term]
id: UBERON:0003260
name: endoderm of hindgut
def: "An endoderm that is part of a hindgut [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "hindgut endoderm" EXACT [OBOL:automatic]
xref: EHDAA:979
xref: EHDAA2:0000781
is_a: UBERON:0000925 ! implied link automatically realized ! endoderm
relationship: part_of UBERON:0001046
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001046 ! hindgut
[Term]
id: UBERON:0003261
name: endoderm of thyroid primordium
def: "An endoderm that is part of a thyroid primordium [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "thyroid primordium endoderm" EXACT [OBOL:automatic]
xref: EHDAA:956
xref: EHDAA2:0002035
is_a: UBERON:0000925 ! implied link automatically realized ! endoderm
relationship: part_of UBERON:0003091
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0003091 ! thyroid primordium
[Term]
id: UBERON:0003262
name: mesoderm of amnion
def: "A mesoderm that is part of an amnion [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "amnion mesoderm" EXACT [OBOL:automatic]
xref: EHDAA:140
xref: EHDAA2:0000118
xref: HOG:0000622
is_a: UBERON:0000926 ! implied link automatically realized ! mesoderm
relationship: part_of UBERON:0000305
intersection_of: UBERON:0000926 ! mesoderm
intersection_of: part_of UBERON:0000305 ! amnion
[Term]
id: UBERON:0003264
name: mesoderm of yolk sac
def: "A mesoderm that is part of a yolk sac [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "yolk sac mesoderm" EXACT [OBOL:automatic]
xref: EHDAA:168
xref: HOG:0000617
is_a: UBERON:0000926 ! implied link automatically realized ! mesoderm
relationship: part_of UBERON:0001040
intersection_of: UBERON:0000926 ! mesoderm
intersection_of: part_of UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0003265
name: mesoderm of chorion
def: "A mesoderm that is part of a chorion [Obol]." [OBOL:automatic]
comment: TODO - check
synonym: "chorion (vertebrates) mesoderm" EXACT [OBOL:automatic]
synonym: "chorion mesoderm" EXACT [OBOL:automatic]
synonym: "mesoderm of chorion (vertebrates)" EXACT [OBOL:automatic]
xref: EHDAA:154
xref: EHDAA2:0000247
xref: HOG:0000620
is_a: UBERON:0000926 ! implied link automatically realized ! mesoderm
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0003124
intersection_of: UBERON:0000926 ! mesoderm
intersection_of: part_of UBERON:0003124 ! chorion
[Term]
id: UBERON:0003266
name: nerve of central nervous system
def: "A nerve that is part of a central nervous system [Obol]." [OBOL:automatic]
synonym: "central nervous system nerve" EXACT [OBOL:automatic]
synonym: "nerve of neuraxis" EXACT [OBOL:automatic]
synonym: "neuraxis nerve" EXACT [OBOL:automatic]
xref: EHDAA:2851
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
relationship: part_of UBERON:0001017
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0003267
name: tooth of upper jaw
def: "A calcareous tooth that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "calcareous tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "calcareous tooth of upper jaw" EXACT [OBOL:automatic]
synonym: "dentine containing tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "dentine containing tooth of upper jaw" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch calcareous tooth" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch dentine containing tooth" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch tooth" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch vertebrate tooth" EXACT [OBOL:automatic]
synonym: "tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "upper jaw calcareous tooth" EXACT [OBOL:automatic]
synonym: "upper jaw dentine containing tooth" EXACT [OBOL:automatic]
synonym: "upper jaw tooth" EXACT [OBOL:automatic]
synonym: "upper jaw vertebrate tooth" EXACT [OBOL:automatic]
synonym: "vertebrate tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "vertebrate tooth of upper jaw" EXACT [OBOL:automatic]
xref: EHDAA:8045
xref: EHDAA2:0002129
xref: MA:0001909
xref: ncithesaurus:Upper_Jaw_Tooth
is_a: UBERON:0001091 ! implied link automatically realized ! calcareous tooth
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001709
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0003268
name: tooth of lower jaw
def: "A calcareous tooth that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "calcareous tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "calcareous tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "dentine containing tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "dentine containing tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "lower jaw calcareous tooth" EXACT [OBOL:automatic]
synonym: "lower jaw dentine containing tooth" EXACT [OBOL:automatic]
synonym: "lower jaw tooth" EXACT [OBOL:automatic]
synonym: "lower jaw vertebrate tooth" EXACT [OBOL:automatic]
synonym: "tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch calcareous tooth" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch dentine containing tooth" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch tooth" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch vertebrate tooth" EXACT [OBOL:automatic]
synonym: "vertebrate tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "vertebrate tooth of ventral mandibular arch" EXACT [OBOL:automatic]
xref: EHDAA:8009
xref: EHDAA2:0001029
xref: MA:0001907
xref: ncithesaurus:Lower_Jaw_Tooth
is_a: UBERON:0001091 ! implied link automatically realized ! calcareous tooth
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001710
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0003269
name: skeletal muscle of eye
def: "A portion of skeletal muscle tissue that is part of a eye [Obol]." [OBOL:automatic]
synonym: "eye skeletal muscle" EXACT [OBOL:automatic]
synonym: "eye skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of eye" EXACT [OBOL:automatic]
xref: EHDAA:2923
xref: EHDAA2:0000486
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
relationship: part_of UBERON:0000970
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0003270
name: skeletal muscle of leg
def: "A portion of skeletal muscle tissue that is part of a leg [Obol]." [OBOL:automatic]
synonym: "leg skeletal muscle" EXACT [OBOL:automatic]
synonym: "leg skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of leg" EXACT [OBOL:automatic]
xref: EHDAA:8291
xref: EHDAA2:0000974
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
relationship: part_of UBERON:0000978
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003271
name: skeletal muscle of pelvic girdle
def: "A portion of skeletal muscle tissue that is part of a pelvic girdle [Obol]." [OBOL:automatic]
synonym: "girdle-pelvic skeletal muscle" EXACT [OBOL:automatic]
synonym: "girdle-pelvic skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "pelvic girdle bone skeletal muscle" EXACT [OBOL:automatic]
synonym: "pelvic girdle bone skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "pelvic girdle skeletal muscle" EXACT [OBOL:automatic]
synonym: "pelvic girdle skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of girdle-pelvic" EXACT [OBOL:automatic]
synonym: "skeletal muscle of pelvic girdle bone" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of girdle-pelvic" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of pelvic girdle" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of pelvic girdle bone" EXACT [OBOL:automatic]
xref: EHDAA:8326
xref: EHDAA2:0001430
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
relationship: part_of UBERON:0001271
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001271 ! pelvic girdle
[Term]
id: UBERON:0003272
name: skeletal muscle of arm
def: "A portion of skeletal muscle tissue that is part of an arm [Obol]." [OBOL:automatic]
synonym: "arm skeletal muscle" EXACT [OBOL:automatic]
synonym: "arm skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "brachial region skeletal muscle" EXACT [OBOL:automatic]
synonym: "brachial region skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb skeletal muscle" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of brachial region" EXACT [OBOL:automatic]
synonym: "skeletal muscle of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of arm" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of brachial region" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of proximal segment of free upper limb" EXACT [OBOL:automatic]
xref: EHDAA:8277
xref: EHDAA2:0000142
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
relationship: part_of UBERON:0001460
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003273
name: skeletal muscle of tongue
def: "A portion of skeletal muscle tissue that is part of a tongue [Obol]." [OBOL:automatic]
synonym: "skeletal muscle tissue of tongue" EXACT [OBOL:automatic]
synonym: "tongue skeletal muscle" EXACT [OBOL:automatic]
synonym: "tongue skeletal muscle tissue" EXACT [OBOL:automatic]
xref: EHDAA:9146
xref: EHDAA2:0002065
xref: HOG:0001390
xref: MA:0001596
xref: ncithesaurus:Tongue_Skeletal_Muscle_Tissue
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
is_a: UBERON:0003899 ! implied link automatically realized ! skeletal muscle of head
relationship: part_of UBERON:0001723
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0003274
name: mesothelium of omental bursa
def: "A mesothelium that is part of a lesser sac [Obol]." [OBOL:automatic]
synonym: "lesser sac meso-epithelium" EXACT [OBOL:automatic]
synonym: "lesser sac mesothelium" EXACT [OBOL:automatic]
synonym: "meso-epithelium of lesser sac" EXACT [OBOL:automatic]
synonym: "meso-epithelium of omental bursa" EXACT [OBOL:automatic]
synonym: "mesothelium of lesser sac" EXACT [OBOL:automatic]
synonym: "omental bursa meso-epithelium" EXACT [OBOL:automatic]
synonym: "omental bursa mesothelium" EXACT [OBOL:automatic]
xref: EHDAA:2339
xref: EHDAA2:0001299
xref: HOG:0000441
is_a: UBERON:0005669 ! implied link automatically realized ! peritoneal cavity mesothelium
relationship: part_of UBERON:0001341
intersection_of: UBERON:0001136 ! mesothelium
intersection_of: part_of UBERON:0001341 ! lesser sac
[Term]
id: UBERON:0003276
name: skeleton of embryo
def: "A skeletal system that is part of a embryo [Obol]." [OBOL:automatic]
synonym: "developmental tissue set of all bones" EXACT [OBOL:automatic]
synonym: "developmental tissue set of bones of body" EXACT [OBOL:automatic]
synonym: "developmental tissue skeletal system" EXACT [OBOL:automatic]
synonym: "developmental tissue skeleton" EXACT [OBOL:automatic]
synonym: "developmental tissue skeleton system" EXACT [OBOL:automatic]
synonym: "embryo set of all bones" EXACT [OBOL:automatic]
synonym: "embryo set of bones of body" EXACT [OBOL:automatic]
synonym: "embryo skeletal system" EXACT [OBOL:automatic]
synonym: "embryo skeleton" EXACT [OBOL:automatic]
synonym: "embryo skeleton system" EXACT [OBOL:automatic]
synonym: "set of all bones of developmental tissue" EXACT [OBOL:automatic]
synonym: "set of all bones of embryo" EXACT [OBOL:automatic]
synonym: "set of bones of body of developmental tissue" EXACT [OBOL:automatic]
synonym: "set of bones of body of embryo" EXACT [OBOL:automatic]
synonym: "skeletal system of developmental tissue" EXACT [OBOL:automatic]
synonym: "skeletal system of embryo" EXACT [OBOL:automatic]
synonym: "skeleton of developmental tissue" EXACT [OBOL:automatic]
synonym: "skeleton system of developmental tissue" EXACT [OBOL:automatic]
synonym: "skeleton system of embryo" EXACT [OBOL:automatic]
xref: EHDAA:5047
is_a: UBERON:0001434 ! implied link automatically realized ! skeletal system
relationship: part_of UBERON:0000922
intersection_of: UBERON:0001434 ! skeletal system
intersection_of: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003277
name: skeleton of upper jaw
def: "A subdivision of skeletal system that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "palatoquadrate arch subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of upper jaw" EXACT [OBOL:automatic]
synonym: "upper jaw subdivision of skeleton" EXACT [OBOL:automatic]
xref: AAO:0000622
xref: EHDAA:8041
xref: EHDAA2:0002128
xref: HOG:0000429
is_a: UBERON:0000075 ! implied link automatically realized ! subdivision of skeletal system
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001709
intersection_of: UBERON:0000075 ! subdivision of skeletal system
intersection_of: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0003278
name: skeleton of lower jaw
def: "A subdivision of skeletal system that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "lower jaw subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of lower jaw" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch subdivision of skeleton" EXACT [OBOL:automatic]
xref: AAO:0000274
xref: EHDAA:8005
xref: EHDAA2:0001028
xref: HOG:0000428
is_a: UBERON:0000075 ! implied link automatically realized ! subdivision of skeletal system
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001710
intersection_of: UBERON:0000075 ! subdivision of skeletal system
intersection_of: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0003279
name: endothelium of trachea
synonym: "endothelium of windpipe" EXACT [OBOL:automatic]
synonym: "trachea endothelium" EXACT [OBOL:automatic]
synonym: "windpipe endothelium" EXACT [OBOL:automatic]
xref: EHDAA:3082
xref: EHDAA2:0002068
is_a: UBERON:0001901 ! implied link automatically realized ! epithelium of trachea
is_a: UBERON:0001986 ! implied link automatically realized ! endothelium
relationship: part_of UBERON:0003126
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0003280
name: endothelium of main bronchus
def: "An endothelium that is part of a main bronchus [Obol]." [OBOL:automatic]
synonym: "bronchus principalis endothelium" EXACT [OBOL:automatic]
synonym: "endothelium of bronchus principalis" EXACT [OBOL:automatic]
synonym: "endothelium of primary bronchus" EXACT [OBOL:automatic]
synonym: "endothelium of principal bronchus" EXACT [OBOL:automatic]
synonym: "main bronchus endothelium" EXACT [OBOL:automatic]
synonym: "primary bronchus endothelium" EXACT [OBOL:automatic]
synonym: "principal bronchus endothelium" EXACT [OBOL:automatic]
xref: EHDAA:3076
xref: EHDAA2:0001046
is_a: UBERON:0001986 ! implied link automatically realized ! endothelium
is_a: UBERON:0002340 ! implied link automatically realized ! epithelium of main bronchus
relationship: part_of UBERON:0002182
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0003281
name: mesentery of stomach
def: "A mesentery that is part of a stomach [Obol]." [OBOL:automatic]
synonym: "mesentery of ventriculus" EXACT [OBOL:automatic]
synonym: "mesogastium" EXACT [MA:0001617]
synonym: "mesogastrium" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html]
synonym: "stomach mesentery" EXACT [Obol:obol]
synonym: "ventriculus mesentery" EXACT [OBOL:automatic]
xref: EHDAA:2999
xref: EHDAA2:0001922
xref: HOG:0000358
xref: MA:0001617
is_a: UBERON:0004854 ! implied link automatically realized ! gastrointestinal system mesentery
relationship: part_of UBERON:0000945
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0003282
name: mesentery of heart
def: "A mesentery that is part of a heart [Obol]." [OBOL:automatic]
synonym: "heart mesentery" EXACT [OBOL:automatic]
xref: EHDAA:432
xref: EHDAA2:0000739
xref: HOG:0000353
is_a: UBERON:0002095 ! implied link automatically realized ! mesentery
relationship: part_of UBERON:0000948
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0003283
name: mesentery of oesophagus
def: "A mesentery that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophagus mesentery" EXACT [OBOL:automatic]
synonym: "gullet mesentery" EXACT [OBOL:automatic]
synonym: "mesentery of esophagus" EXACT [OBOL:automatic]
synonym: "mesentery of gullet" EXACT [OBOL:automatic]
synonym: "oesophagus mesentery" EXACT [OBOL:automatic]
xref: EHDAA:2943
xref: EHDAA2:0001288
xref: HOG:0000415
xref: MA:0001569
is_a: UBERON:0001975 ! implied link automatically realized ! serosa of esophagus
is_a: UBERON:0004854 ! implied link automatically realized ! gastrointestinal system mesentery
relationship: part_of UBERON:0001043
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0003284
name: mesentery of midgut
def: "A mesentery that is part of a midgut [Obol]." [OBOL:automatic]
synonym: "midgut mesentery" EXACT [OBOL:automatic]
xref: EHDAA:3031
xref: EHDAA2:0001202
xref: HOG:0000413
is_a: UBERON:0004854 ! implied link automatically realized ! gastrointestinal system mesentery
relationship: part_of UBERON:0001045
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001045 ! midgut
[Term]
id: UBERON:0003285
name: limb of embryo
def: "A limb that is part of a embryo [Obol]." [OBOL:automatic]
synonym: "developmental tissue limb" EXACT [OBOL:automatic]
synonym: "embryo limb" EXACT [OBOL:automatic]
synonym: "limb of developmental tissue" EXACT [OBOL:automatic]
xref: EHDAA:1697
is_a: UBERON:0002101 ! implied link automatically realized ! limb
relationship: part_of UBERON:0000922
intersection_of: UBERON:0002101 ! limb
intersection_of: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003286
name: duodenum of foregut
def: "A duodenum that is part of a foregut [Obol]." [OBOL:automatic]
synonym: "foregut duodenum" EXACT [OBOL:automatic]
xref: EHDAA:3830
xref: EHDAA2:0000560
is_a: UBERON:0002114 ! implied link automatically realized ! duodenum
relationship: part_of UBERON:0001041
intersection_of: UBERON:0002114 ! duodenum
intersection_of: part_of UBERON:0001041 ! foregut
[Term]
id: UBERON:0003287
name: duodenum of midgut
def: "A duodenum that is part of a midgut [Obol]." [OBOL:automatic]
synonym: "midgut duodenum" EXACT [OBOL:automatic]
xref: EHDAA:3937
xref: EHDAA2:0001189
is_a: UBERON:0002114 ! implied link automatically realized ! duodenum
relationship: part_of UBERON:0001045
intersection_of: UBERON:0002114 ! duodenum
intersection_of: part_of UBERON:0001045 ! midgut
[Term]
id: UBERON:0003288
name: meninx of midbrain
def: "A meninx that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "meninges of midbrain" EXACT PLURAL [OBOL:automatic]
synonym: "midbrain meninges" EXACT PLURAL [OBOL:automatic]
synonym: "midbrain meninx" EXACT [OBOL:automatic]
xref: EHDAA:3708
xref: EHDAA2:0001109
xref: EHDAA2:0001174
xref: HOG:0000012
xref: MA:0001058
is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx
relationship: part_of UBERON:0001891
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0003289
name: meninx of telencephalon
def: "A meninx that is part of a telencephalon [Obol]." [OBOL:automatic]
synonym: "meninges of telencephalon" EXACT PLURAL [OBOL:automatic]
synonym: "telencephalon meninges" EXACT PLURAL [OBOL:automatic]
synonym: "telencephalon meninx" EXACT [OBOL:automatic]
xref: EHDAA:5476
xref: EHDAA2:0001990
xref: HOG:0000010
xref: MA:0000979
is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges
relationship: part_of UBERON:0001893
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0003290
name: meninx of diencephalon
def: "A meninx that is part of a diencephalon [Obol]." [OBOL:automatic]
synonym: "between brain meninges" EXACT [OBOL:automatic]
synonym: "between brain meninx" EXACT [OBOL:automatic]
synonym: "diencephalon meninges" EXACT [OBOL:automatic]
synonym: "diencephalon meninx" EXACT [OBOL:automatic]
synonym: "interbrain meninges" EXACT [OBOL:automatic]
synonym: "interbrain meninx" EXACT [OBOL:automatic]
synonym: "mature diencephalon meninges" EXACT [OBOL:automatic]
synonym: "mature diencephalon meninx" EXACT [OBOL:automatic]
synonym: "meninges of between brain" EXACT [OBOL:automatic]
synonym: "meninges of diencephalon" EXACT [OBOL:automatic]
synonym: "meninges of interbrain" EXACT [OBOL:automatic]
synonym: "meninges of mature diencephalon" EXACT [OBOL:automatic]
synonym: "meninx of between brain" EXACT [OBOL:automatic]
synonym: "meninx of interbrain" EXACT [OBOL:automatic]
synonym: "meninx of mature diencephalon" EXACT [OBOL:automatic]
xref: EHDAA:5458
xref: EHDAA2:0000399
xref: HOG:0000009
xref: MA:0000826
is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges
relationship: part_of UBERON:0001894
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003291
name: meninx of hindbrain
def: "A meninx that is part of a hindbrain [Obol]." [OBOL:automatic]
synonym: "hindbrain meninges" EXACT [OBOL:automatic]
synonym: "hindbrain meninx" EXACT [OBOL:automatic]
synonym: "meninges of hindbrain" EXACT [OBOL:automatic]
xref: EHDAA:3688
xref: EHDAA2:0000770
xref: HOG:0000011
xref: MA:0000987
is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx
relationship: part_of UBERON:0002028
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0003292
name: meninx of spinal cord
def: "A meninx that is part of a spinal cord [Obol]." [OBOL:automatic]
synonym: "menines of spinal cord" EXACT PLURAL []
synonym: "meninges of spinal cord" EXACT [OBOL:automatic]
synonym: "spinal cord meninges" EXACT [OBOL:automatic]
synonym: "spinal cord meninx" EXACT [OBOL:automatic]
synonym: "spinal meninges" EXACT PLURAL []
synonym: "spinal meninx" EXACT []
xref: EHDAA:2865
xref: EHDAA2:0001895
xref: HOG:0000443
xref: MA:0001130
xref: ncithesaurus:Spinal_Meninges
is_a: UBERON:0002360 ! implied link automatically realized ! meninx
is_a: UBERON:0005174 ! implied link automatically realized ! back organ
relationship: part_of UBERON:0002240
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0003293
name: gland of oral region
def: "A gland that is part of a oral opening [Obol]." [OBOL:automatic]
synonym: "gland of oral opening" EXACT [OBOL:automatic]
synonym: "gland of oral part of face" EXACT [OBOL:automatic]
synonym: "gland of subdivision of mouth" EXACT [OBOL:automatic]
synonym: "oral opening gland" EXACT [OBOL:automatic]
synonym: "oral part of face gland" EXACT [OBOL:automatic]
synonym: "oral region gland" EXACT [OBOL:automatic]
synonym: "subdivision of mouth gland" EXACT [OBOL:automatic]
xref: EHDAA:2181
xref: EHDAA2:0001327
xref: HOG:0000652
is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut
relationship: part_of UBERON:0000166
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000166 ! oral opening
[Term]
id: UBERON:0003294
name: gland of foregut
def: "A gland that is part of a foregut [Obol]." [OBOL:automatic]
synonym: "foregut gland" EXACT [OBOL:automatic]
xref: EHDAA:950
xref: EHDAA2:0000567
xref: HOG:0000650
is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut
relationship: part_of UBERON:0001041
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001041 ! foregut
[Term]
id: UBERON:0003295
name: gland of pharynx
def: "A gland that is part of a pharynx [Obol]." [OBOL:automatic]
synonym: "pharynx gland" EXACT [OBOL:automatic]
xref: EHDAA:2967
xref: EHDAA2:0001461
is_a: UBERON:0002530 ! implied link automatically realized ! gland
relationship: part_of UBERON:0001042
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0003296
name: gland of diencephalon
def: "A gland that is part of a diencephalon [Obol]." [OBOL:automatic]
synonym: "between brain gland" EXACT [OBOL:automatic]
synonym: "diencephalon gland" EXACT [OBOL:automatic]
synonym: "gland of between brain" EXACT [OBOL:automatic]
synonym: "gland of interbrain" EXACT [OBOL:automatic]
synonym: "gland of mature diencephalon" EXACT [OBOL:automatic]
synonym: "interbrain gland" EXACT [OBOL:automatic]
synonym: "mature diencephalon gland" EXACT [OBOL:automatic]
xref: EHDAA:4475
xref: EHDAA2:0000395
xref: HOG:0000653
is_a: UBERON:0002530 ! implied link automatically realized ! gland
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001894
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003297
name: gland of integumental system
def: "A gland that is part of a integumental system [Obol]." [OBOL:automatic]
synonym: "integumental system gland" EXACT [OBOL:automatic]
xref: EHDAA:6522
xref: EHDAA2:0000837
xref: HOG:0000654
xref: MA:0000144
is_a: UBERON:0002530 ! implied link automatically realized ! gland
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002416
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0002416 ! integumental system
[Term]
id: UBERON:0003298
name: roof plate of neural tube
def: "A roof plate that is part of a neural tube [Obol]." [OBOL:automatic]
synonym: "neural tube roof plate" EXACT [OBOL:automatic]
synonym: "neural tube roofplate" EXACT [OBOL:automatic]
synonym: "roofplate of neural tube" EXACT [OBOL:automatic]
xref: EHDAA:2891
xref: EHDAA:916
xref: EHDAA2:0001270
xref: HOG:0000303
xref: ZFA:0001436
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0001049
relationship: part_of UBERON:0003054
intersection_of: UBERON:0000479 ! portion of tissue
intersection_of: part_of UBERON:0001049 ! neural tube
intersection_of: part_of UBERON:0003054 ! roof plate
[Term]
id: UBERON:0003299
name: roof plate of midbrain
def: "A roof plate that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "midbrain roof plate" EXACT [OBOL:automatic]
synonym: "midbrain roofplate" EXACT [OBOL:automatic]
synonym: "roofplate of midbrain" EXACT [OBOL:automatic]
xref: EHDAA:3712
xref: EHDAA2:0001111
xref: EHDAA2:0001177
xref: HOG:0000772
xref: ZFA:0000355
is_a: UBERON:0003298 ! implied link automatically realized ! roof plate of neural tube
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0001891
relationship: part_of UBERON:0003054
intersection_of: UBERON:0000479 ! portion of tissue
intersection_of: part_of UBERON:0001891 ! midbrain
intersection_of: part_of UBERON:0003054 ! roof plate
[Term]
id: UBERON:0003300
name: roof plate of telencephalon
def: "A roof plate that is part of a telencephalon [Obol]." [OBOL:automatic]
synonym: "roofplate of telencephalon" EXACT [OBOL:automatic]
synonym: "telencephalon roof plate" EXACT [OBOL:automatic]
synonym: "telencephalon roofplate" EXACT [OBOL:automatic]
xref: EHDAA:3512
xref: EHDAA2:0001994
xref: HOG:0000774
is_a: UBERON:0003298 ! implied link automatically realized ! roof plate of neural tube
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0001893
relationship: part_of UBERON:0003054
intersection_of: UBERON:0000479 ! portion of tissue
intersection_of: part_of UBERON:0001893 ! telencephalon
intersection_of: part_of UBERON:0003054 ! roof plate
[Term]
id: UBERON:0003301
name: roof plate of diencephalon
def: "A roof plate that is part of a diencephalon [Obol]." [OBOL:automatic]
synonym: "between brain roof plate" EXACT [OBOL:automatic]
synonym: "between brain roofplate" EXACT [OBOL:automatic]
synonym: "diencephalon roof plate" EXACT [OBOL:automatic]
synonym: "diencephalon roofplate" EXACT [OBOL:automatic]
synonym: "interbrain roof plate" EXACT [OBOL:automatic]
synonym: "interbrain roofplate" EXACT [OBOL:automatic]
synonym: "mature diencephalon roof plate" EXACT [OBOL:automatic]
synonym: "mature diencephalon roofplate" EXACT [OBOL:automatic]
synonym: "roof plate of between brain" EXACT [OBOL:automatic]
synonym: "roof plate of interbrain" EXACT [OBOL:automatic]
synonym: "roof plate of mature diencephalon" EXACT [OBOL:automatic]
synonym: "roofplate of between brain" EXACT [OBOL:automatic]
synonym: "roofplate of diencephalon" EXACT [OBOL:automatic]
synonym: "roofplate of interbrain" EXACT [OBOL:automatic]
synonym: "roofplate of mature diencephalon" EXACT [OBOL:automatic]
xref: EHDAA:1979
xref: EHDAA:2657
xref: EHDAA:3494
xref: EHDAA2:0000402
xref: HOG:0000771
xref: ZFA:0001358
is_a: UBERON:0003298 ! implied link automatically realized ! roof plate of neural tube
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0001894
relationship: part_of UBERON:0003054
intersection_of: UBERON:0000479 ! portion of tissue
intersection_of: part_of UBERON:0001894 ! diencephalon
intersection_of: part_of UBERON:0003054 ! roof plate
[Term]
id: UBERON:0003302
name: roof plate of metencephalon
def: "A roof plate that is part of a metencephalon [Obol]." [OBOL:automatic]
synonym: "epencephalon-2 roof plate" EXACT [OBOL:automatic]
synonym: "epencephalon-2 roofplate" EXACT [OBOL:automatic]
synonym: "metencephalon roof plate" EXACT [OBOL:automatic]
synonym: "metencephalon roofplate" EXACT [OBOL:automatic]
synonym: "roof plate of epencephalon-2" EXACT [OBOL:automatic]
synonym: "roofplate of epencephalon-2" EXACT [OBOL:automatic]
synonym: "roofplate of metencephalon" EXACT [OBOL:automatic]
xref: EHDAA:5524
xref: EHDAA2:0001160
xref: HOG:0000770
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
is_a: UBERON:0003298 ! implied link automatically realized ! roof plate of neural tube
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0001895
relationship: part_of UBERON:0003054
intersection_of: UBERON:0000479 ! portion of tissue
intersection_of: part_of UBERON:0001895 ! metencephalon
intersection_of: part_of UBERON:0003054 ! roof plate
[Term]
id: UBERON:0003303
name: roof plate of medulla oblongata
def: "A roof plate that is part of a medulla oblongata [Obol]." [OBOL:automatic]
synonym: "bulb roof plate" EXACT [OBOL:automatic]
synonym: "bulb roofplate" EXACT [OBOL:automatic]
synonym: "medulla oblongata roof plate" EXACT [OBOL:automatic]
synonym: "medulla oblongata roofplate" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata roof plate" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata roofplate" EXACT [OBOL:automatic]
synonym: "metepencephalon roof plate" EXACT [OBOL:automatic]
synonym: "metepencephalon roofplate" EXACT [OBOL:automatic]
synonym: "roof plate of bulb" EXACT [OBOL:automatic]
synonym: "roof plate of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "roof plate of metepencephalon" EXACT [OBOL:automatic]
synonym: "roofplate of bulb" EXACT [OBOL:automatic]
synonym: "roofplate of medulla oblongata" EXACT [OBOL:automatic]
synonym: "roofplate of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "roofplate of metepencephalon" EXACT [OBOL:automatic]
xref: EHDAA:7614
xref: EHDAA2:0001099
xref: HOG:0000776
is_a: UBERON:0003298 ! implied link automatically realized ! roof plate of neural tube
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0001896
relationship: part_of UBERON:0003054
intersection_of: UBERON:0000479 ! portion of tissue
intersection_of: part_of UBERON:0001896 ! medulla oblongata
intersection_of: part_of UBERON:0003054 ! roof plate
[Term]
id: UBERON:0003304
name: blood island of mesoderm
def: "A blood island that is part of a mesoderm [Obol]." [OBOL:automatic]
synonym: "mesoderm blood island" EXACT [OBOL:automatic]
xref: EHDAA:170
is_a: UBERON:0003061 ! implied link automatically realized ! blood island
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0000926
intersection_of: UBERON:0003061 ! blood island
intersection_of: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003305
name: blood island of mesenchyme
def: "A blood island that is part of a mesenchyme [Obol]." [OBOL:automatic]
synonym: "mesenchyme blood island" EXACT [OBOL:automatic]
xref: EHDAA:207
is_a: UBERON:0003061 ! implied link automatically realized ! blood island
relationship: part_of UBERON:0003104
intersection_of: UBERON:0003061 ! blood island
intersection_of: part_of UBERON:0003104 ! mesenchyme
[Term]
id: UBERON:0003306
name: floor plate of neural tube
def: "A floor plate that is part of a neural tube [Obol]." [OBOL:automatic]
synonym: "floorplate of neural tube" EXACT [OBOL:automatic]
synonym: "neural tube floor plate" EXACT [OBOL:automatic]
synonym: "neural tube floorplate" EXACT [OBOL:automatic]
xref: EHDAA:2871
xref: EHDAA:910
xref: EHDAA2:0001256
xref: HOG:0000300
xref: ZFA:0001434
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0000481 ! implied link automatically realized ! multi-tissue structure
relationship: part_of UBERON:0001049
relationship: part_of UBERON:0003079
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001049 ! neural tube
intersection_of: part_of UBERON:0003079 ! floor plate
[Term]
id: UBERON:0003307
name: floor plate of midbrain
def: "A floor plate that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "floorplate of midbrain" EXACT [OBOL:automatic]
synonym: "midbrain floor plate" EXACT [OBOL:automatic]
synonym: "midbrain floorplate" EXACT [OBOL:automatic]
xref: EHDAA:3698
xref: EHDAA2:0001106
xref: EHDAA2:0001164
xref: HOG:0000780
xref: ZFA:0001677
is_a: UBERON:0000481 ! implied link automatically realized ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001891
relationship: part_of UBERON:0003079
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001891 ! midbrain
intersection_of: part_of UBERON:0003079 ! floor plate
[Term]
id: UBERON:0003308
name: floor plate of telencephalon
def: "A floor plate that is part of a telencephalon [Obol]." [OBOL:automatic]
synonym: "floorplate of telencephalon" EXACT [OBOL:automatic]
synonym: "telencephalon floor plate" EXACT [OBOL:automatic]
synonym: "telencephalon floorplate" EXACT [OBOL:automatic]
xref: EHDAA:3498
xref: EHDAA2:0001983
xref: HOG:0000783
xref: ZFA:0000914
is_a: UBERON:0000481 ! implied link automatically realized ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001893
relationship: part_of UBERON:0003079
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001893 ! telencephalon
intersection_of: part_of UBERON:0003079 ! floor plate
[Term]
id: UBERON:0003309
name: floor plate of diencephalon
def: "A floor plate that is part of a diencephalon [Obol]." [OBOL:automatic]
synonym: "between brain floor plate" EXACT [OBOL:automatic]
synonym: "between brain floorplate" EXACT [OBOL:automatic]
synonym: "diencephalon floor plate" EXACT [OBOL:automatic]
synonym: "diencephalon floorplate" EXACT [OBOL:automatic]
synonym: "floor plate of between brain" EXACT [OBOL:automatic]
synonym: "floor plate of interbrain" EXACT [OBOL:automatic]
synonym: "floor plate of mature diencephalon" EXACT [OBOL:automatic]
synonym: "floorplate of between brain" EXACT [OBOL:automatic]
synonym: "floorplate of diencephalon" EXACT [OBOL:automatic]
synonym: "floorplate of interbrain" EXACT [OBOL:automatic]
synonym: "floorplate of mature diencephalon" EXACT [OBOL:automatic]
synonym: "interbrain floor plate" EXACT [OBOL:automatic]
synonym: "interbrain floorplate" EXACT [OBOL:automatic]
synonym: "mature diencephalon floor plate" EXACT [OBOL:automatic]
synonym: "mature diencephalon floorplate" EXACT [OBOL:automatic]
xref: EHDAA:1975
xref: EHDAA:2651
xref: EHDAA:3480
xref: EHDAA2:0000388
xref: HOG:0000782
xref: ZFA:0000871
is_a: UBERON:0000481 ! implied link automatically realized ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001894
relationship: part_of UBERON:0003079
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001894 ! diencephalon
intersection_of: part_of UBERON:0003079 ! floor plate
[Term]
id: UBERON:0003310
name: floor plate of metencephalon
def: "A floor plate that is part of a metencephalon [Obol]." [OBOL:automatic]
synonym: "epencephalon-2 floor plate" EXACT [OBOL:automatic]
synonym: "epencephalon-2 floorplate" EXACT [OBOL:automatic]
synonym: "floor plate of epencephalon-2" EXACT [OBOL:automatic]
synonym: "floorplate of epencephalon-2" EXACT [OBOL:automatic]
synonym: "floorplate of metencephalon" EXACT [OBOL:automatic]
synonym: "metencephalon floor plate" EXACT [OBOL:automatic]
synonym: "metencephalon floorplate" EXACT [OBOL:automatic]
xref: EHDAA:5500
xref: EHDAA2:0001158
xref: HOG:0000784
is_a: UBERON:0000481 ! implied link automatically realized ! multi-tissue structure
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
relationship: part_of UBERON:0001895
relationship: part_of UBERON:0003079
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001895 ! metencephalon
intersection_of: part_of UBERON:0003079 ! floor plate
[Term]
id: UBERON:0003311
name: floor plate of medulla oblongata
def: "A floor plate that is part of a medulla oblongata [Obol]." [OBOL:automatic]
synonym: "bulb floor plate" EXACT [OBOL:automatic]
synonym: "bulb floorplate" EXACT [OBOL:automatic]
synonym: "floor plate of bulb" EXACT [OBOL:automatic]
synonym: "floor plate of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "floor plate of metepencephalon" EXACT [OBOL:automatic]
synonym: "floorplate of bulb" EXACT [OBOL:automatic]
synonym: "floorplate of medulla oblongata" EXACT [OBOL:automatic]
synonym: "floorplate of medulla oblonmgata" EXACT [OBOL:automatic]
synonym: "floorplate of metepencephalon" EXACT [OBOL:automatic]
synonym: "medulla oblongata floor plate" EXACT [OBOL:automatic]
synonym: "medulla oblongata floorplate" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata floor plate" EXACT [OBOL:automatic]
synonym: "medulla oblonmgata floorplate" EXACT [OBOL:automatic]
synonym: "metepencephalon floor plate" EXACT [OBOL:automatic]
synonym: "metepencephalon floorplate" EXACT [OBOL:automatic]
xref: EHDAA:7590
xref: EHDAA2:0001097
xref: HOG:0000786
is_a: UBERON:0000481 ! implied link automatically realized ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001896
relationship: part_of UBERON:0003079
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: part_of UBERON:0001896 ! medulla oblongata
intersection_of: part_of UBERON:0003079 ! floor plate
[Term]
id: UBERON:0003312
name: mesenchyme of testis
def: "A mesenchyme that is part of a testis [Obol]." [OBOL:automatic]
synonym: "gonad of male genitalia mesenchyme" EXACT [OBOL:automatic]
synonym: "gonad of male genitals mesenchyme" EXACT [OBOL:automatic]
synonym: "gonad of male reproductive system mesenchyme" EXACT [OBOL:automatic]
synonym: "gonada of male genitalia mesenchyme" EXACT [OBOL:automatic]
synonym: "gonada of male genitals mesenchyme" EXACT [OBOL:automatic]
synonym: "gonada of male reproductive system mesenchyme" EXACT [OBOL:automatic]
synonym: "male genitalia gonad mesenchyme" EXACT [OBOL:automatic]
synonym: "male genitalia gonada mesenchyme" EXACT [OBOL:automatic]
synonym: "male genitals gonad mesenchyme" EXACT [OBOL:automatic]
synonym: "male genitals gonada mesenchyme" EXACT [OBOL:automatic]
synonym: "male reproductive system gonad mesenchyme" EXACT [OBOL:automatic]
synonym: "male reproductive system gonada mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of gonad of male genitalia" EXACT [OBOL:automatic]
synonym: "mesenchyme of gonad of male genitals" EXACT [OBOL:automatic]
synonym: "mesenchyme of gonad of male reproductive system" EXACT [OBOL:automatic]
synonym: "mesenchyme of gonada of male genitalia" EXACT [OBOL:automatic]
synonym: "mesenchyme of gonada of male genitals" EXACT [OBOL:automatic]
synonym: "mesenchyme of gonada of male reproductive system" EXACT [OBOL:automatic]
synonym: "mesenchyme of male genitalia gonad" EXACT [OBOL:automatic]
synonym: "mesenchyme of male genitalia gonada" EXACT [OBOL:automatic]
synonym: "mesenchyme of male genitals gonad" EXACT [OBOL:automatic]
synonym: "mesenchyme of male genitals gonada" EXACT [OBOL:automatic]
synonym: "mesenchyme of male reproductive system gonad" EXACT [OBOL:automatic]
synonym: "mesenchyme of male reproductive system gonada" EXACT [OBOL:automatic]
synonym: "testis mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA:8150
xref: EHDAA2:0002010
xref: HOG:0001442
is_a: UBERON:0003855 ! implied link automatically realized ! gonad mesenchyme
relationship: part_of UBERON:0000473
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000473 ! testis
[Term]
id: UBERON:0003313
name: mesenchyme of embryo
def: "A mesenchyme that is part of a embryo [Obol]." [OBOL:automatic]
synonym: "developmental tissue mesenchyme" EXACT [OBOL:automatic]
synonym: "embryo mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of developmental tissue" EXACT [OBOL:automatic]
xref: EHDAA:177
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0000922
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003314
name: mesenchyme of eye
def: "A mesenchyme that is part of a eye [Obol]." [OBOL:automatic]
synonym: "eye mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA:2910
xref: EHDAA2:0000485
xref: HOG:0001084
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
relationship: part_of UBERON:0000970
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0003315
name: mesenchyme of ovary
def: "A mesenchyme that is part of a ovary [Obol]." [OBOL:automatic]
synonym: "female reproductive system gonad mesenchyme" EXACT [OBOL:automatic]
synonym: "female reproductive system gonada mesenchyme" EXACT [OBOL:automatic]
synonym: "gonad of female reproductive system mesenchyme" EXACT [OBOL:automatic]
synonym: "gonada of female reproductive system mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of female reproductive system gonad" EXACT [OBOL:automatic]
synonym: "mesenchyme of female reproductive system gonada" EXACT [OBOL:automatic]
synonym: "mesenchyme of gonad of female reproductive system" EXACT [OBOL:automatic]
synonym: "mesenchyme of gonada of female reproductive system" EXACT [OBOL:automatic]
synonym: "ovary mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA:8128
xref: EHDAA2:0001362
xref: HOG:0001441
is_a: UBERON:0003855 ! implied link automatically realized ! gonad mesenchyme
relationship: part_of UBERON:0000992
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000992 ! ovary
[Term]
id: UBERON:0003316
name: mesenchyme of yolk sac
def: "A mesenchyme that is part of a yolk sac [Obol]." [OBOL:automatic]
synonym: "yolk sac mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA:205
xref: EHDAA2:0002216
xref: HOG:0000503
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
relationship: part_of UBERON:0001040
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0003317
name: mesenchyme of incisor
def: "A mesenchyme that is part of a incisor tooth [Obol]." [OBOL:automatic]
synonym: "incisor mesenchyme" EXACT [OBOL:automatic]
synonym: "incisor tooth mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of incisor tooth" EXACT [OBOL:automatic]
xref: EHDAA:8015
xref: EHDAA:8051
is_a: UBERON:0003856 ! implied link automatically realized ! tooth mesenchyme
relationship: part_of UBERON:0001098
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001098 ! incisor tooth
[Term]
id: UBERON:0003318
name: mesenchyme of elbow
def: "A mesenchyme that is part of a elbow [Obol]." [OBOL:automatic]
synonym: "cubital region mesenchyme" EXACT [OBOL:automatic]
synonym: "elbow mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of cubital region" EXACT [OBOL:automatic]
xref: EHDAA:4170
xref: EHDAA:6216
xref: EHDAA2:0000432
xref: HOG:0001075
is_a: UBERON:0003413 ! implied link automatically realized ! mesenchyme of arm
relationship: part_of UBERON:0001461
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001461 ! elbow
[Term]
id: UBERON:0003319
name: mesenchyme of carpal region
def: "A mesenchyme that is part of a wrist [Obol]." [OBOL:automatic]
synonym: "carpal region mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of wrist" EXACT [OBOL:automatic]
synonym: "wrist mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA:5200
xref: EHDAA2:0000220
is_a: UBERON:0003413 ! implied link automatically realized ! mesenchyme of arm
relationship: part_of UBERON:0001462
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0003320
name: mesenchyme of hip
def: "A mesenchyme that is part of a hip [Obol]." [OBOL:automatic]
synonym: "hip mesenchyme" EXACT [OBOL:automatic]
synonym: "hip region mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of hip region" EXACT [OBOL:automatic]
synonym: "mesenchyme of regio coxae" EXACT [OBOL:automatic]
synonym: "regio coxae mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA:5157
xref: EHDAA:6182
xref: EHDAA2:0000786
xref: HOG:0001029
is_a: UBERON:0003860 ! implied link automatically realized ! hindlimb mesenchyme
relationship: part_of UBERON:0001464
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0003321
name: mesenchyme of knee
def: "A mesenchyme that is part of a knee [Obol]." [OBOL:automatic]
synonym: "knee mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA:5163
xref: EHDAA:6188
xref: EHDAA2:0000898
xref: HOG:0001070
is_a: UBERON:0003860 ! implied link automatically realized ! hindlimb mesenchyme
relationship: part_of UBERON:0001465
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0003322
name: mesenchyme of shoulder
def: "A mesenchyme that is part of a shoulder [Obol]." [OBOL:automatic]
synonym: "shoulder mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA:4184
xref: EHDAA:6232
xref: EHDAA2:0001837
xref: HOG:0001035
is_a: UBERON:0003859 ! implied link automatically realized ! forelimb mesenchyme
relationship: part_of UBERON:0001467
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003323
name: mesenchyme of upper jaw
def: "A mesenchyme that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "mesenchyme of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch mesenchyme" EXACT [OBOL:automatic]
synonym: "upper jaw mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA:8031
xref: EHDAA2:0002124
xref: HOG:0001099
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005253 ! implied link automatically realized ! head mesenchyme
relationship: part_of UBERON:0001709
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0003324
name: mesenchyme of lower jaw
def: "A mesenchyme that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "lower jaw mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA:8003
xref: EHDAA2:0001024
xref: HOG:0001069
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005253 ! implied link automatically realized ! head mesenchyme
relationship: part_of UBERON:0001710
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0003325
name: mesenchyme of pinna
def: "A mesenchyme that is part of a pinna [Obol]." [OBOL:automatic]
synonym: "auricle mesenchyme" EXACT [OBOL:automatic]
synonym: "auricle of ear mesenchyme" EXACT [OBOL:automatic]
synonym: "auricle of external ear mesenchyme" EXACT [OBOL:automatic]
synonym: "auricula (auris externa) mesenchyme" EXACT [OBOL:automatic]
synonym: "auricula mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of auricle" EXACT [OBOL:automatic]
synonym: "mesenchyme of auricle of ear" EXACT [OBOL:automatic]
synonym: "mesenchyme of auricle of external ear" EXACT [OBOL:automatic]
synonym: "mesenchyme of auricula" EXACT [OBOL:automatic]
synonym: "mesenchyme of auricula (auris externa)" EXACT [OBOL:automatic]
synonym: "mesenchyme of pinna of ear" EXACT [OBOL:automatic]
synonym: "pinna mesenchyme" EXACT [OBOL:automatic]
synonym: "pinna of ear mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA:8981
xref: EHDAA2:0001469
xref: HOG:0000747
is_a: UBERON:0005253 ! implied link automatically realized ! head mesenchyme
relationship: part_of UBERON:0001757
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0003326
name: mesenchyme of mammary gland
def: "A mesenchyme that is part of a lactiferous gland [Obol]." [OBOL:automatic]
synonym: "lactiferous gland mesenchyme" EXACT [OBOL:automatic]
synonym: "lobe of breast mesenchyme" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland mesenchyme" EXACT [OBOL:automatic]
synonym: "mammary gland mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of lactiferous gland" EXACT [OBOL:automatic]
synonym: "mesenchyme of lobe of breast" EXACT [OBOL:automatic]
synonym: "mesenchyme of lobe of mammary gland" EXACT [OBOL:automatic]
xref: EHDAA:6528
xref: EHDAA2:0001058
xref: HOG:0001087
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001911
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0003327
name: mesenchyme of forearm
def: "A mesenchyme that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "antebrachial region mesenchyme" EXACT [OBOL:automatic]
synonym: "arm middle limb segment mesenchyme" EXACT [OBOL:automatic]
synonym: "arm zeugopod mesenchyme" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment mesenchyme" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod mesenchyme" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb mesenchyme" EXACT [OBOL:automatic]
synonym: "lower arm mesenchyme" EXACT [OBOL:automatic]
synonym: "lower segment of arm mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of antebrachial region" EXACT [OBOL:automatic]
synonym: "mesenchyme of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "mesenchyme of arm zeugopod" EXACT [OBOL:automatic]
synonym: "mesenchyme of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "mesenchyme of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "mesenchyme of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower arm" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower segment of arm" EXACT [OBOL:automatic]
synonym: "mesenchyme of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "mesenchyme of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "mesenchyme of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "mesenchyme of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "mesenchyme of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "mesenchyme of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "mesenchyme of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "mesenchyme of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm mesenchyme" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region mesenchyme" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb mesenchyme" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment mesenchyme" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod mesenchyme" EXACT [OBOL:automatic]
synonym: "zeugopod of arm mesenchyme" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region mesenchyme" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA:4176
xref: EHDAA:6222
xref: EHDAA2:0000555
xref: HOG:0000504
is_a: UBERON:0003859 ! implied link automatically realized ! forelimb mesenchyme
relationship: part_of UBERON:0002386
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0003328
name: mesenchyme of footplate
def: "A mesenchyme that is part of a stapes base [Obol]." [OBOL:automatic]
synonym: "footplate mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of stapes base" EXACT [OBOL:automatic]
synonym: "stapes base mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA:5149
xref: EHDAA:6172
xref: EHDAA2:0000549
is_a: UBERON:0005253 ! implied link automatically realized ! head mesenchyme
relationship: part_of UBERON:0002496
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002496 ! stapes base
[Term]
id: UBERON:0003329
name: submucosa of anal canal
def: "A submucosa that is part of an anal canal [Obol]." [OBOL:automatic]
synonym: "anal canal submucosa" EXACT [OBOL:automatic]
synonym: "anal canal viewed anatomically submucosa" EXACT [OBOL:automatic]
synonym: "anal region submucosa" EXACT [OBOL:automatic]
synonym: "anatomical anal canal submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of anal canal viewed anatomically" EXACT [OBOL:automatic]
synonym: "submucosa of anal region" EXACT [OBOL:automatic]
synonym: "submucosa of anatomical anal canal" EXACT [OBOL:automatic]
xref: EMAPA:27535
xref: FMA:85399
is_a: UBERON:0001208 ! implied link automatically realized ! submucosa of large intestine
relationship: part_of UBERON:0000159
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0000159 ! anal canal
[Term]
id: UBERON:0003330
name: submucosa of rectum
def: "A submucosa that is part of a rectum [Obol]." [OBOL:automatic]
synonym: "rectum submucosa" EXACT [OBOL:automatic]
xref: EMAPA:27083
xref: EMAPA:27087
xref: EMAPA:27323
xref: EMAPA:27331
xref: FMA:15034
is_a: UBERON:0001205 ! implied link automatically realized ! submucosa of small intestine
relationship: part_of UBERON:0001052
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0003331
name: submucosa of colon
def: "A submucosa that is part of a colon [Obol]." [OBOL:automatic]
synonym: "colon submucosa" EXACT [OBOL:automatic]
synonym: "large bowel submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of large bowel" EXACT [OBOL:automatic]
xref: EMAPA:27379
xref: FMA:14985
is_a: UBERON:0001208 ! implied link automatically realized ! submucosa of large intestine
relationship: part_of UBERON:0001155
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0003332
name: submucosa of duodenum
def: "A submucosa that is part of a duodenum [Obol]." [OBOL:automatic]
synonym: "duodenum submucosa" EXACT [OBOL:automatic]
xref: EMAPA:27239
xref: FMA:14943
is_a: UBERON:0001205 ! implied link automatically realized ! submucosa of small intestine
relationship: part_of UBERON:0002114
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002114 ! duodenum
[Term]
id: UBERON:0003333
name: submucosa of jejunum
def: "A submucosa that is part of a jejunum [Obol]." [OBOL:automatic]
synonym: "jejunum submucosa" EXACT [OBOL:automatic]
xref: EMAPA:27111
xref: EMAPA:27351
xref: FMA:14950
is_a: UBERON:0001205 ! implied link automatically realized ! submucosa of small intestine
relationship: part_of UBERON:0002115
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002115 ! jejunum
[Term]
id: UBERON:0003334
name: serosa of rectum
def: "A serous membrane that is part of a rectum [Obol]." [OBOL:automatic]
synonym: "rectum serosa" EXACT [OBOL:automatic]
synonym: "rectum serous membrane" EXACT [OBOL:automatic]
synonym: "serous membrane of rectum" EXACT [OBOL:automatic]
xref: EMAPA:27087
xref: EMAPA:27331
xref: FMA:15039
is_a: UBERON:0001206 ! implied link automatically realized ! serosa of small intestine
relationship: part_of UBERON:0001052
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0003335
name: serosa of colon
def: "A serous membrane that is part of a colon [Obol]." [OBOL:automatic]
synonym: "colon serosa" EXACT [OBOL:automatic]
synonym: "colon serous membrane" EXACT [OBOL:automatic]
synonym: "large bowel serosa" EXACT [OBOL:automatic]
synonym: "large bowel serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of large bowel" EXACT [OBOL:automatic]
synonym: "serous membrane of colon" EXACT [OBOL:automatic]
synonym: "serous membrane of large bowel" EXACT [OBOL:automatic]
xref: EMAPA:27387
xref: FMA:14990
is_a: UBERON:0001209 ! implied link automatically realized ! serosa of large intestine
relationship: part_of UBERON:0001155
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0003336
name: serosa of duodenum
def: "A serous membrane that is part of a duodenum [Obol]." [OBOL:automatic]
synonym: "duodenum serosa" EXACT [OBOL:automatic]
synonym: "duodenum serous membrane" EXACT [OBOL:automatic]
synonym: "serous membrane of duodenum" EXACT [OBOL:automatic]
xref: EMAPA:27247
xref: FMA:14948
is_a: UBERON:0001206 ! implied link automatically realized ! serosa of small intestine
relationship: part_of UBERON:0002114
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0002114 ! duodenum
[Term]
id: UBERON:0003337
name: serosa of jejunum
def: "A serous membrane that is part of a jejunum [Obol]." [OBOL:automatic]
synonym: "jejunum serosa" EXACT [OBOL:automatic]
synonym: "jejunum serous membrane" EXACT [OBOL:automatic]
synonym: "serous membrane of jejunum" EXACT [OBOL:automatic]
xref: EMAPA:27115
xref: EMAPA:27359
xref: FMA:14955
is_a: UBERON:0001206 ! implied link automatically realized ! serosa of small intestine
relationship: part_of UBERON:0002115
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0002115 ! jejunum
[Term]
id: UBERON:0003338
name: ganglion of peripheral nervous system
def: "A ganglion that is part of a peripheral nervous system [Obol]." [OBOL:automatic]
synonym: "peripheral nervous system ganglion" EXACT [OBOL:automatic]
xref: EMAPA:18371
xref: MA:0001161
is_a: UBERON:0000045 ! implied link automatically realized ! ganglion
relationship: part_of UBERON:0000010
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0003339
name: ganglion of central nervous system
def: "A ganglion that is part of a central nervous system [Obol]." [OBOL:automatic]
synonym: "central nervous system ganglion" EXACT [OBOL:automatic]
synonym: "ganglion of neuraxis" EXACT [OBOL:automatic]
synonym: "neuraxis ganglion" EXACT [OBOL:automatic]
xref: EHDAA2:0000227
xref: EMAPA:16658
xref: FMA:83843
is_a: UBERON:0000045 ! implied link automatically realized ! ganglion
relationship: part_of UBERON:0001017
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0003340
name: urethra of urogenital sinus
def: "A urethra that is part of a primitive urogenital sinus [Obol]." [OBOL:automatic]
synonym: "urogenital sinus urethra" EXACT [OBOL:automatic]
xref: EMAPA:30891
is_a: UBERON:0000057 ! implied link automatically realized ! urethra
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0000164
intersection_of: UBERON:0000057 ! urethra
intersection_of: part_of UBERON:0000164 ! primitive urogenital sinus
[Term]
id: UBERON:0003341
name: urethra of urinary system
xref: EMAPA:30901
is_obsolete: true
[Term]
id: UBERON:0003342
name: mucosa of anal canal
def: "A mucosa that is part of an anal canal [Obol]." [OBOL:automatic]
synonym: "anal canal mucosa" EXACT [OBOL:automatic]
synonym: "anal canal mucosa of organ" EXACT [OBOL:automatic]
synonym: "anal canal mucous membrane" EXACT [OBOL:automatic]
synonym: "anal canal organ mucosa" EXACT [OBOL:automatic]
synonym: "anal canal viewed anatomically mucosa" EXACT [OBOL:automatic]
synonym: "anal canal viewed anatomically mucosa of organ" EXACT [OBOL:automatic]
synonym: "anal canal viewed anatomically mucous membrane" EXACT [OBOL:automatic]
synonym: "anal canal viewed anatomically organ mucosa" EXACT [OBOL:automatic]
synonym: "anal region mucosa" EXACT [OBOL:automatic]
synonym: "anal region mucosa of organ" EXACT [OBOL:automatic]
synonym: "anal region mucous membrane" EXACT [OBOL:automatic]
synonym: "anal region organ mucosa" EXACT [OBOL:automatic]
synonym: "anatomical anal canal mucosa" EXACT [OBOL:automatic]
synonym: "anatomical anal canal mucosa of organ" EXACT [OBOL:automatic]
synonym: "anatomical anal canal mucous membrane" EXACT [OBOL:automatic]
synonym: "anatomical anal canal organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of anal canal viewed anatomically" EXACT [OBOL:automatic]
synonym: "mucosa of anal region" EXACT [OBOL:automatic]
synonym: "mucosa of anatomical anal canal" EXACT [OBOL:automatic]
synonym: "mucosa of organ of anal canal" EXACT [OBOL:automatic]
synonym: "mucosa of organ of anal canal viewed anatomically" EXACT [OBOL:automatic]
synonym: "mucosa of organ of anal region" EXACT [OBOL:automatic]
synonym: "mucosa of organ of anatomical anal canal" EXACT [OBOL:automatic]
synonym: "mucous membrane of anal canal" EXACT [OBOL:automatic]
synonym: "mucous membrane of anal canal viewed anatomically" EXACT [OBOL:automatic]
synonym: "mucous membrane of anal region" EXACT [OBOL:automatic]
synonym: "mucous membrane of anatomical anal canal" EXACT [OBOL:automatic]
synonym: "organ mucosa of anal canal" EXACT [OBOL:automatic]
synonym: "organ mucosa of anal canal viewed anatomically" EXACT [OBOL:automatic]
synonym: "organ mucosa of anal region" EXACT [OBOL:automatic]
synonym: "organ mucosa of anatomical anal canal" EXACT [OBOL:automatic]
xref: EMAPA:27531
xref: FMA:74654
is_a: UBERON:0001207 ! implied link automatically realized ! mucosa of large intestine
relationship: part_of UBERON:0000159
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000159 ! anal canal
[Term]
id: UBERON:0003343
name: mucosa of oral region
def: "A mucosa that is part of a oral opening [Obol]." [OBOL:automatic]
synonym: "mucosa of oral opening" EXACT [OBOL:automatic]
synonym: "mucosa of oral part of face" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oral opening" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oral part of face" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oral region" EXACT [OBOL:automatic]
synonym: "mucosa of organ of subdivision of mouth" EXACT [OBOL:automatic]
synonym: "mucosa of subdivision of mouth" EXACT [OBOL:automatic]
synonym: "mucous membrane of oral opening" EXACT [OBOL:automatic]
synonym: "mucous membrane of oral part of face" EXACT [OBOL:automatic]
synonym: "mucous membrane of oral region" EXACT [OBOL:automatic]
synonym: "mucous membrane of subdivision of mouth" EXACT [OBOL:automatic]
synonym: "oral opening mucosa" EXACT [OBOL:automatic]
synonym: "oral opening mucosa of organ" EXACT [OBOL:automatic]
synonym: "oral opening mucous membrane" EXACT [OBOL:automatic]
synonym: "oral opening organ mucosa" EXACT [OBOL:automatic]
synonym: "oral part of face mucosa" EXACT [OBOL:automatic]
synonym: "oral part of face mucosa of organ" EXACT [OBOL:automatic]
synonym: "oral part of face mucous membrane" EXACT [OBOL:automatic]
synonym: "oral part of face organ mucosa" EXACT [OBOL:automatic]
synonym: "oral region mucosa" EXACT [OBOL:automatic]
synonym: "oral region mucosa of organ" EXACT [OBOL:automatic]
synonym: "oral region mucous membrane" EXACT [OBOL:automatic]
synonym: "oral region organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of oral opening" EXACT [OBOL:automatic]
synonym: "organ mucosa of oral part of face" EXACT [OBOL:automatic]
synonym: "organ mucosa of oral region" EXACT [OBOL:automatic]
synonym: "organ mucosa of subdivision of mouth" EXACT [OBOL:automatic]
synonym: "subdivision of mouth mucosa" EXACT [OBOL:automatic]
synonym: "subdivision of mouth mucosa of organ" EXACT [OBOL:automatic]
synonym: "subdivision of mouth mucous membrane" EXACT [OBOL:automatic]
synonym: "subdivision of mouth organ mucosa" EXACT [OBOL:automatic]
xref: EMAPA:26937
is_a: UBERON:0003729 ! implied link automatically realized ! mouth mucosa
relationship: part_of UBERON:0000166
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000166 ! oral opening
[Term]
id: UBERON:0003346
name: mucosa of rectum
def: "A mucosa that is part of a rectum [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of rectum" EXACT [OBOL:automatic]
synonym: "mucous membrane of rectum" EXACT [OBOL:automatic]
synonym: "organ mucosa of rectum" EXACT [OBOL:automatic]
synonym: "rectum mucosa" EXACT [OBOL:automatic]
synonym: "rectum mucosa of organ" EXACT [OBOL:automatic]
synonym: "rectum mucous membrane" EXACT [OBOL:automatic]
synonym: "rectum organ mucosa" EXACT [OBOL:automatic]
xref: EMAPA:27081
xref: EMAPA:27319
xref: FMA:15033
is_a: UBERON:0001204 ! implied link automatically realized ! mucosa of small intestine
relationship: part_of UBERON:0001052
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0003350
name: epithelium of mucosa
def: "An epithelium that is part of a mucosa [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of mucosa" EXACT [OBOL:automatic]
synonym: "epithelial tissue of mucosa of organ" EXACT [OBOL:automatic]
synonym: "epithelial tissue of mucous membrane" EXACT [OBOL:automatic]
synonym: "epithelial tissue of organ mucosa" EXACT [OBOL:automatic]
synonym: "epithelium of mucosa of organ" EXACT [OBOL:automatic]
synonym: "epithelium of mucous membrane" EXACT [OBOL:automatic]
synonym: "epithelium of organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa epithelial tissue" EXACT [OBOL:automatic]
synonym: "mucosa epithelium" EXACT [OBOL:automatic]
synonym: "mucosa of organ epithelial tissue" EXACT [OBOL:automatic]
synonym: "mucosa of organ epithelium" EXACT [OBOL:automatic]
synonym: "mucous membrane epithelial tissue" EXACT [OBOL:automatic]
synonym: "mucous membrane epithelium" EXACT [OBOL:automatic]
synonym: "organ mucosa epithelial tissue" EXACT [OBOL:automatic]
synonym: "organ mucosa epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18668
xref: EMAPA:18835
xref: EMAPA:18857
xref: EMAPA:18862
xref: EMAPA:18868
xref: EMAPA:18893
xref: EMAPA:18899
xref: EMAPA:18912
xref: EMAPA:18917
xref: EMAPA:18927
xref: EMAPA:18934
xref: EMAPA:18941
xref: EMAPA:19078
xref: EMAPA:26961
xref: EMAPA:26985
xref: EMAPA:27019
xref: EMAPA:27033
xref: EMAPA:27047
xref: EMAPA:27061
xref: EMAPA:27075
xref: EMAPA:27089
xref: EMAPA:27103
xref: EMAPA:27131
xref: EMAPA:27145
xref: EMAPA:27159
xref: EMAPA:27175
xref: EMAPA:27191
xref: EMAPA:27207
xref: EMAPA:27219
xref: EMAPA:27229
xref: EMAPA:27307
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0000344
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000344 ! mucosa
[Term]
id: UBERON:0003351
name: epithelium of pharynx
def: "An epithelium that is part of a pharynx [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of pharynx" EXACT [OBOL:automatic]
synonym: "pharyngeal epithelium" EXACT [OBOL:automatic]
synonym: "pharynx epithelial tissue" EXACT [OBOL:automatic]
synonym: "pharynx epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0001460
xref: EMAPA:16708
xref: MA:0002725
xref: XAO:0003202
xref: ZFA:0001174
is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium
relationship: part_of UBERON:0001042
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001042 ! pharynx
relationship: develops_from UBERON:0001041 ! foregut
[Term]
id: UBERON:0003352
name: epithelium of midgut
def: "An epithelium that is part of a midgut [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of midgut" EXACT [OBOL:automatic]
synonym: "midgut epithelial tissue" EXACT [OBOL:automatic]
synonym: "midgut epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0001195
xref: EMAPA:16569
is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium
relationship: part_of UBERON:0001045
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001045 ! midgut
[Term]
id: UBERON:0003353
name: epithelium of hindgut
def: "An epithelium that is part of a hindgut [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of hindgut" EXACT [OBOL:automatic]
synonym: "hindgut epithelial tissue" EXACT [OBOL:automatic]
synonym: "hindgut epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0000782
xref: EMAPA:16717
is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium
relationship: part_of UBERON:0001046
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001046 ! hindgut
[Term]
id: UBERON:0003354
name: epithelium of rectum
def: "An epithelium that is part of a rectum [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of rectum" EXACT [OBOL:automatic]
synonym: "rectum epithelial tissue" EXACT [OBOL:automatic]
synonym: "rectum epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0001594
xref: EMAPA:17898
xref: FMA:17510
xref: HOG:0001037
is_a: UBERON:0001902 ! implied link automatically realized ! epithelium of small intestine
relationship: part_of UBERON:0001052
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0003355
name: epithelium of incisor
def: "An epithelium that is part of a incisor tooth [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of incisor" EXACT [OBOL:automatic]
synonym: "epithelial tissue of incisor tooth" EXACT [OBOL:automatic]
synonym: "epithelium of incisor tooth" EXACT [OBOL:automatic]
synonym: "incisor epithelial tissue" EXACT [OBOL:automatic]
synonym: "incisor epithelium" EXACT [OBOL:automatic]
synonym: "incisor tooth epithelial tissue" EXACT [OBOL:automatic]
synonym: "incisor tooth epithelium" EXACT [OBOL:automatic]
xref: EMAPA:17919
xref: EMAPA:17940
is_a: UBERON:0003843 ! implied link automatically realized ! tooth epithelium
relationship: part_of UBERON:0001098
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001098 ! incisor tooth
[Term]
id: UBERON:0003356
name: epithelium of nasal septum
def: "An epithelium that is part of a nasal septum [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of nasal septum" EXACT [OBOL:automatic]
synonym: "nasal septum epithelial tissue" EXACT [OBOL:automatic]
synonym: "nasal septum epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18442
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0001706
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001706 ! nasal septum
[Term]
id: UBERON:0003357
name: epithelium of tongue
def: "An epithelium that is part of a tongue [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of tongue" EXACT [OBOL:automatic]
synonym: "tongue epithelial tissue" EXACT [OBOL:automatic]
synonym: "tongue epithelium" EXACT [OBOL:automatic]
xref: BTO:0000992
xref: EMAPA:17881
xref: EMAPA:18872
xref: MA:0001592
xref: ncithesaurus:Tongue_Epithelium
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium
relationship: part_of UBERON:0001723
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0003358
name: epithelium of soft palate
def: "An epithelium that is part of a soft palate [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of soft palate" EXACT [OBOL:automatic]
synonym: "soft palate epithelial tissue" EXACT [OBOL:automatic]
synonym: "soft palate epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18950
is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium
is_a: UBERON:0005384 ! implied link automatically realized ! nasal cavity epithelium
relationship: part_of UBERON:0001733
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001733 ! soft palate
[Term]
id: UBERON:0003359
name: epithelium of submandibular gland
def: "An epithelium that is part of a submandibular gland [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of submandibular gland" EXACT [OBOL:automatic]
synonym: "submandibular gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "submandibular gland epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18813
xref: HOG:0000989
is_a: UBERON:0004809 ! implied link automatically realized ! salivary gland epithelium
relationship: part_of UBERON:0001736
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001736 ! submandibular gland
[Term]
id: UBERON:0003360
name: epithelium of parotid
def: "An epithelium that is part of a parotid gland [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of parotid" EXACT [OBOL:automatic]
synonym: "epithelial tissue of parotid gland" EXACT [OBOL:automatic]
synonym: "epithelium of parotid gland" EXACT [OBOL:automatic]
synonym: "parotid epithelial tissue" EXACT [OBOL:automatic]
synonym: "parotid epithelium" EXACT [OBOL:automatic]
synonym: "parotid gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "parotid gland epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18538
xref: HOG:0001434
is_a: UBERON:0004809 ! implied link automatically realized ! salivary gland epithelium
relationship: part_of UBERON:0001831
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001831 ! parotid gland
[Term]
id: UBERON:0003361
name: epithelium of sublingual gland
def: "An epithelium that is part of a sublingual gland [Obol]." [OBOL:automatic]
synonym: "ductus sublingualis epithelial tissue" EXACT [OBOL:automatic]
synonym: "ductus sublingualis epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of ductus sublingualis" EXACT [OBOL:automatic]
synonym: "epithelial tissue of Rivinus'gland" EXACT [OBOL:automatic]
synonym: "epithelial tissue of sublingual gland" EXACT [OBOL:automatic]
synonym: "epithelium of ductus sublingualis" EXACT [OBOL:automatic]
synonym: "epithelium of Rivinus'gland" EXACT [OBOL:automatic]
synonym: "Rivinus'gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "Rivinus'gland epithelium" EXACT [OBOL:automatic]
synonym: "sublingual gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "sublingual gland epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18810
xref: HOG:0001098
is_a: UBERON:0004809 ! implied link automatically realized ! salivary gland epithelium
relationship: part_of UBERON:0001832
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001832 ! sublingual gland
[Term]
id: UBERON:0003362
name: epithelium of endolymphatic duct
def: "An epithelium that is part of a endolymphatic duct [Obol]." [OBOL:automatic]
synonym: "endolymphatic duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "endolymphatic duct epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of endolymphatic duct" EXACT [OBOL:automatic]
xref: EMAPA:18582
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0001860
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001860 ! endolymphatic duct
[Term]
id: UBERON:0003363
name: epithelium of ductus reuniens
def: "An epithelium that is part of a ductus reuniens [Obol]." [OBOL:automatic]
synonym: "ductus reuniens epithelial tissue" EXACT [OBOL:automatic]
synonym: "ductus reuniens epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of ductus reuniens" EXACT [OBOL:automatic]
xref: EMAPA:17289
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0001861
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001861 ! ductus reuniens
[Term]
id: UBERON:0003364
name: epithelium of right lung
def: "An epithelium that is part of a right lung [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of right lung" EXACT [OBOL:automatic]
synonym: "right lung epithelial tissue" EXACT [OBOL:automatic]
synonym: "right lung epithelium" EXACT [OBOL:automatic]
xref: EMAPA:17663
is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium
relationship: part_of UBERON:0002167
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003365
name: epithelium of left lung
def: "An epithelium that is part of a left lung [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of left lung" EXACT [OBOL:automatic]
synonym: "left lung epithelial tissue" EXACT [OBOL:automatic]
synonym: "left lung epithelium" EXACT [OBOL:automatic]
xref: EMAPA:17655
is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium
relationship: part_of UBERON:0002168
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003366
name: epithelium of uterine horn
def: "An epithelium that is part of a uterine horn [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of uterine horn" EXACT [OBOL:automatic]
synonym: "uterine horn epithelial tissue" EXACT [OBOL:automatic]
synonym: "uterine horn epithelium" EXACT [OBOL:automatic]
xref: EMAPA:29030
is_a: UBERON:0004909 ! implied link automatically realized ! epithelium of gonad
relationship: part_of UBERON:0002247
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002247 ! uterine horn
[Term]
id: UBERON:0003367
name: epithelium of vomeronasal organ
def: "An epithelium that is part of a vomeronasal organ [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of Jacobson's organ" EXACT [OBOL:automatic]
synonym: "epithelial tissue of vomeronasal organ" EXACT [OBOL:automatic]
synonym: "epithelium of Jacobson's organ" EXACT [OBOL:automatic]
synonym: "Jacobson's organ epithelial tissue" EXACT [OBOL:automatic]
synonym: "Jacobson's organ epithelium" EXACT [OBOL:automatic]
synonym: "vomeronasal organ epithelial tissue" EXACT [OBOL:automatic]
synonym: "vomeronasal organ epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18444
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0002255
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002255 ! vomeronasal organ
[Term]
id: UBERON:0003368
name: epithelium of hard palate
def: "An epithelium that is part of a hard palate [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of hard palate" EXACT [OBOL:automatic]
synonym: "hard palate epithelial tissue" EXACT [OBOL:automatic]
synonym: "hard palate epithelium" EXACT [OBOL:automatic]
xref: EMAPA:18953
is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium
is_a: UBERON:0005384 ! implied link automatically realized ! nasal cavity epithelium
relationship: part_of UBERON:0003216
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003216 ! hard palate
[Term]
id: UBERON:0003371
name: ectoderm of leg
def: "An ectoderm that is part of a leg [Obol]." [OBOL:automatic]
synonym: "leg ectoderm" EXACT [OBOL:automatic]
xref: EMAPA:17254
is_a: UBERON:0005232 ! implied link automatically realized ! hindlimb ectoderm
relationship: part_of UBERON:0000978
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003372
name: ectoderm of arm
def: "An ectoderm that is part of an arm [Obol]." [OBOL:automatic]
synonym: "arm ectoderm" EXACT [OBOL:automatic]
synonym: "brachial region ectoderm" EXACT [OBOL:automatic]
synonym: "ectoderm of brachial region" EXACT [OBOL:automatic]
synonym: "ectoderm of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb ectoderm" EXACT [OBOL:automatic]
xref: EMAPA:17243
is_a: UBERON:0005231 ! implied link automatically realized ! forelimb ectoderm
relationship: part_of UBERON:0001460
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003373
name: ectoderm of footplate
def: "An ectoderm that is part of a stapes base [Obol]." [OBOL:automatic]
synonym: "ectoderm of stapes base" EXACT [OBOL:automatic]
synonym: "footplate ectoderm" EXACT [OBOL:automatic]
synonym: "stapes base ectoderm" EXACT [OBOL:automatic]
xref: EMAPA:17250
is_a: UBERON:0000924 ! implied link automatically realized ! ectoderm
relationship: part_of UBERON:0002496
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0002496 ! stapes base
[Term]
id: UBERON:0003374
name: ectoderm of chorion
def: "An ectoderm that is part of a chorion [Obol]." [OBOL:automatic]
synonym: "chorion (vertebrates) ectoderm" EXACT [OBOL:automatic]
synonym: "chorion ectoderm" EXACT [OBOL:automatic]
synonym: "ectoderm of chorion (vertebrates)" EXACT [OBOL:automatic]
xref: EMAPA:16113
is_a: UBERON:0004366 ! implied link automatically realized ! extraembryonic ectoderm
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0003124
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0003124 ! chorion
[Term]
id: UBERON:0003377
name: nerve of peripheral nervous system
def: "A nerve that is part of a peripheral nervous system [Obol]." [OBOL:automatic]
synonym: "peripheral nervous system nerve" EXACT [OBOL:automatic]
xref: EMAPA:25148
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
relationship: part_of UBERON:0000010
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0003378
name: cardiac muscle of auricular region
def: "A portion of cardiac muscle tissue that is part of a external ear [Obol]." [OBOL:automatic]
synonym: "auricular region cardiac muscle" EXACT [OBOL:automatic]
synonym: "auricular region cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "auricular region cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "auricular region cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "auricular region heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "auricular region heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "auricular region heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "auricular region heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "auricular region muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "auricular region muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "auricular region muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "auricular region muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "auricular region muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "auricular region muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "auricular region muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "auricular region myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "auricular region myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "auricular region of head cardiac muscle" EXACT [OBOL:automatic]
synonym: "auricular region of head cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "auricular region of head cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "auricular region of head cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "auricular region of head heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "auricular region of head heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "auricular region of head heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "auricular region of head heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "auricular region of head muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "auricular region of head muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "auricular region of head muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "auricular region of head muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "auricular region of head muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "auricular region of head muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "auricular region of head muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "auricular region of head myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "auricular region of head myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "auricular region of head textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "auricular region of head textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "auricular region of head textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "auricular region of head textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "auricular region of head textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "auricular region textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "auricular region textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "auricular region textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "auricular region textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "auricular region textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of auricular region" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of auricular region of head" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of external ear" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of outer ear" EXACT [OBOL:automatic]
synonym: "cardiac muscle of auricular region of head" EXACT [OBOL:automatic]
synonym: "cardiac muscle of external ear" EXACT [OBOL:automatic]
synonym: "cardiac muscle of outer ear" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of auricular region" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of auricular region of head" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of external ear" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of outer ear" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of auricular region" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of auricular region of head" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of external ear" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of outer ear" EXACT [OBOL:automatic]
synonym: "external ear cardiac muscle" EXACT [OBOL:automatic]
synonym: "external ear cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "external ear cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "external ear cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "external ear heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "external ear heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "external ear heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "external ear heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "external ear muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "external ear muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "external ear muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "external ear muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "external ear muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "external ear muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "external ear muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "external ear myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "external ear myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "external ear textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "external ear textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "external ear textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "external ear textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "external ear textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of auricular region" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of auricular region of head" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of external ear" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of outer ear" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of auricular region" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of auricular region of head" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of external ear" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of outer ear" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of auricular region" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of auricular region of head" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of external ear" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of outer ear" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of auricular region" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of auricular region of head" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of external ear" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of outer ear" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of auricular region" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of auricular region of head" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of external ear" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of outer ear" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of auricular region" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of auricular region of head" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of external ear" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of outer ear" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of auricular region" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of auricular region of head" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of external ear" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of outer ear" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of auricular region" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of auricular region of head" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of external ear" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of outer ear" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of auricular region" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of auricular region of head" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of external ear" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of outer ear" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of auricular region" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of auricular region of head" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of external ear" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of outer ear" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of auricular region" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of auricular region of head" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of external ear" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of outer ear" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of auricular region" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of auricular region of head" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of external ear" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of outer ear" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of auricular region" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of auricular region of head" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of external ear" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of outer ear" EXACT [OBOL:automatic]
synonym: "outer ear cardiac muscle" EXACT [OBOL:automatic]
synonym: "outer ear cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "outer ear cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "outer ear cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "outer ear heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "outer ear heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "outer ear heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "outer ear heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "outer ear muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "outer ear muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "outer ear muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "outer ear muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "outer ear muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "outer ear muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "outer ear muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "outer ear myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "outer ear myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "outer ear textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "outer ear textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "outer ear textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "outer ear textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "outer ear textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of auricular region" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of auricular region of head" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of external ear" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of outer ear" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of auricular region" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of auricular region of head" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of external ear" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of outer ear" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of auricular region" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of auricular region of head" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of external ear" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of outer ear" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of auricular region" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of auricular region of head" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of external ear" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of outer ear" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of auricular region" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of auricular region of head" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of external ear" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of outer ear" EXACT [OBOL:automatic]
xref: EMAPA:17318
xref: EMAPA:17324
is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue
relationship: part_of UBERON:0001691
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0001691 ! external ear
[Term]
id: UBERON:0003379
name: cardiac muscle of right atrium
def: "A portion of cardiac muscle tissue that is part of a right atrium [Obol]." [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of heart right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of right atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of heart right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of right atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac right atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac right atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac right atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "cardiac right atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac right atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac right atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac right atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac right atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of heart right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of right atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of right atrium of heart" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of heart right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of right atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of right atrium of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart right atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart right atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "heart right atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "heart right atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart right atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "heart right atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "heart right atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "heart right atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of right atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of heart right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of right atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of right atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of heart right atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of right atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of right atrium of heart" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of heart right atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of right atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of right atrium of heart" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "right atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "right atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "right atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "right atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "right atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium of heart cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "right atrium of heart muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "right atrium of heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right atrium of heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right atrium of heart textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium of heart textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "right atrium of heart textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "right atrium of heart textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "right atrium of heart textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "right atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "right atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "right atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "right atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "right cardiac atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "right cardiac atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right cardiac atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right cardiac atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "right cardiac atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "right cardiac atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right cardiac atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right cardiac atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right cardiac atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "right cardiac atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "right cardiac atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "right cardiac atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of heart right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of right atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of heart right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of right atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of heart right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of right atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of heart right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of right atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of right cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of cardiac right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of heart right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of right atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of right atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of right cardiac atrium" EXACT [OBOL:automatic]
xref: EMAPA:17326
xref: FMA:7282
xref: HOG:0001227
is_a: UBERON:0004490 ! implied link automatically realized ! cardiac muscle tissue of atrium
relationship: part_of UBERON:0002078
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002078 ! right atrium
[Term]
id: UBERON:0003380
name: cardiac muscle of left atrium
def: "A portion of cardiac muscle tissue that is part of a left atrium [Obol]." [OBOL:automatic]
synonym: "cardiac left atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac left atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac left atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "cardiac left atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac left atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac left atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac left atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac left atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of heart left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle of left atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of heart left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of left atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart left atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart left atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "heart left atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "heart left atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart left atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "heart left atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "heart left atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "heart left atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of heart left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of left atrium" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of left atrium of heart" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of heart left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of left atrium" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of left atrium of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "left atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "left atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "left atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "left atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "left atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium of heart cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "left atrium of heart muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "left atrium of heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left atrium of heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left atrium of heart textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium of heart textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "left atrium of heart textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "left atrium of heart textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "left atrium of heart textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "left atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "left atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "left atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "left atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "left cardiac atrium cardiac muscle" EXACT [OBOL:automatic]
synonym: "left cardiac atrium cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left cardiac atrium cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left cardiac atrium heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "left cardiac atrium muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "left cardiac atrium myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left cardiac atrium myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left cardiac atrium textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left cardiac atrium textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "left cardiac atrium textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "left cardiac atrium textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "left cardiac atrium textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of left atrium" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of heart left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of left atrium" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of left atrium of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of heart left atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of left atrium" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of left atrium of heart" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of heart left atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of left atrium" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of left atrium of heart" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of heart left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of left atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of heart left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of left atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of heart left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of left atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of heart left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of left atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of left cardiac atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of cardiac left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of heart left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of left atrium" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of left atrium of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of left cardiac atrium" EXACT [OBOL:automatic]
xref: EMAPA:17320
xref: FMA:7285
xref: HOG:0001225
is_a: UBERON:0004490 ! implied link automatically realized ! cardiac muscle tissue of atrium
relationship: part_of UBERON:0002079
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002079 ! left atrium
[Term]
id: UBERON:0003381
name: cardiac muscle of right ventricle
def: "A portion of cardiac muscle tissue that is part of a right ventricle [Obol]." [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of heart right ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of right ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle of heart right ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of heart right ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of right ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of heart right ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of right ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac right ventricle textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of heart right ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of right ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of heart right ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of right ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of heart right ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of right ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of heart right ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of right ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart right ventricle cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart right ventricle cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right ventricle cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right ventricle cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right ventricle heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right ventricle heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right ventricle heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right ventricle heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right ventricle muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right ventricle muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right ventricle muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart right ventricle muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "heart right ventricle muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "heart right ventricle muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "heart right ventricle muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "heart right ventricle myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart right ventricle myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "heart right ventricle textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart right ventricle textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "heart right ventricle textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "heart right ventricle textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "heart right ventricle textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of heart right ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of right ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of heart right ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of right ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of heart right ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of right ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of heart right ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of right ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of heart right ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of right ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of heart right ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of right ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of heart right ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of right ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of heart right ventricle" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of right ventricle" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of heart right ventricle" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of right ventricle" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "right ventricle cardiac muscle" EXACT [OBOL:automatic]
synonym: "right ventricle cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right ventricle cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right ventricle cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "right ventricle heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right ventricle heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right ventricle heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right ventricle heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right ventricle muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "right ventricle muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "right ventricle muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right ventricle muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "right ventricle muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "right ventricle muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "right ventricle muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "right ventricle myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right ventricle myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right ventricle of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "right ventricle of heart cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right ventricle of heart cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right ventricle of heart cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "right ventricle of heart heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "right ventricle of heart heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "right ventricle of heart heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right ventricle of heart heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right ventricle of heart muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "right ventricle of heart muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "right ventricle of heart muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right ventricle of heart muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "right ventricle of heart muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "right ventricle of heart muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "right ventricle of heart muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "right ventricle of heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "right ventricle of heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "right ventricle of heart textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right ventricle of heart textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "right ventricle of heart textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "right ventricle of heart textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "right ventricle of heart textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "right ventricle textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "right ventricle textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "right ventricle textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "right ventricle textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "right ventricle textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "right ventricular cardiac muscle tissue" EXACT [GO:0003221]
synonym: "textus muscularis of cardiac muscle of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of heart right ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of right ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of heart right ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of right ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of heart right ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of right ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of heart right ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of right ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of right ventricle of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of cardiac right ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of heart right ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of right ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of right ventricle of heart" EXACT [OBOL:automatic]
xref: EMAPA:17342
xref: FMA:83452
xref: HOG:0001236
is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue
relationship: part_of UBERON:0002080
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002080 ! right ventricle
[Term]
id: UBERON:0003382
name: cardiac muscle of left ventricle
def: "A portion of cardiac muscle tissue that is part of a left ventricle [Obol]." [OBOL:automatic]
synonym: "cardiac left ventricle cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "cardiac left ventricle textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of heart left ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of left ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle of heart left ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of heart left ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of left ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of heart left ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of left ventricle" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart left ventricle cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart left ventricle cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left ventricle cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left ventricle cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left ventricle heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left ventricle heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left ventricle heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left ventricle heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left ventricle muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left ventricle muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left ventricle muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart left ventricle muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "heart left ventricle muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "heart left ventricle muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "heart left ventricle muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "heart left ventricle myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "heart left ventricle myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "heart left ventricle textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "heart left ventricle textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "heart left ventricle textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "heart left ventricle textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "heart left ventricle textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of heart left ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of left ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of heart left ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of left ventricle" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of heart left ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of left ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of heart left ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of left ventricle" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "left ventricle cardiac muscle" EXACT [OBOL:automatic]
synonym: "left ventricle cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left ventricle cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left ventricle cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "left ventricle heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left ventricle heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left ventricle heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left ventricle heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left ventricle muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "left ventricle muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "left ventricle muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left ventricle muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "left ventricle muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "left ventricle muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "left ventricle muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "left ventricle myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left ventricle myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left ventricle of heart cardiac muscle" EXACT [OBOL:automatic]
synonym: "left ventricle of heart cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left ventricle of heart cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left ventricle of heart cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "left ventricle of heart heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "left ventricle of heart heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "left ventricle of heart heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left ventricle of heart heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left ventricle of heart muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "left ventricle of heart muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "left ventricle of heart muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left ventricle of heart muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "left ventricle of heart muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "left ventricle of heart muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "left ventricle of heart muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "left ventricle of heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "left ventricle of heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "left ventricle of heart textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left ventricle of heart textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "left ventricle of heart textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "left ventricle of heart textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "left ventricle of heart textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "left ventricle textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "left ventricle textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "left ventricle textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "left ventricle textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "left ventricle textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "left ventricular cardiac muscle tissue" EXACT [GO:0003220]
synonym: "muscle of heart muscle tissue of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of heart left ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of left ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of heart left ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of left ventricle" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of heart left ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of left ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of heart left ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of left ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of heart left ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of left ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of heart left ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of left ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of heart left ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of left ventricle" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of heart left ventricle" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of left ventricle" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of heart left ventricle" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of left ventricle" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of heart left ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of left ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of heart left ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of left ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of heart left ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of left ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of heart left ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of left ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of left ventricle of heart" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of cardiac left ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of heart left ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of left ventricle" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of left ventricle of heart" EXACT [OBOL:automatic]
xref: EMAPA:17339
xref: FMA:83453
xref: HOG:0001234
is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue
relationship: part_of UBERON:0002084
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002084 ! left ventricle
[Term]
id: UBERON:0003383
name: cardiac muscle of interventricular septum
def: "A portion of cardiac muscle tissue that is part of a interventricular septum [Obol]." [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of interventricular septum" EXACT [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of ventricular septum" EXACT [OBOL:automatic]
synonym: "cardiac muscle of ventricular septum" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of interventricular septum" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of ventricular septum" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of interventricular septum" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of ventricular septum" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of interventricular septum" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of ventricular septum" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of interventricular septum" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of ventricular septum" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of interventricular septum" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of ventricular septum" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of interventricular septum" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of ventricular septum" EXACT [OBOL:automatic]
synonym: "interventricular septum cardiac muscle" EXACT [OBOL:automatic]
synonym: "interventricular septum cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "interventricular septum cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "interventricular septum cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "interventricular septum heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "interventricular septum heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "interventricular septum heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "interventricular septum heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "interventricular septum muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "interventricular septum muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "interventricular septum muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "interventricular septum muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "interventricular septum muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "interventricular septum muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "interventricular septum muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "interventricular septum myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "interventricular septum myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "interventricular septum textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "interventricular septum textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "interventricular septum textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "interventricular septum textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "interventricular septum textus muscularis of myocardium" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of interventricular septum" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of ventricular septum" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of interventricular septum" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of ventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of interventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of ventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of interventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of ventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of interventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of ventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of interventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of ventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of interventricular septum" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of ventricular septum" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of interventricular septum" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of ventricular septum" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of interventricular septum" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of ventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of interventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of ventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of interventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of ventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of interventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of ventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of interventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of ventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of interventricular septum" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of ventricular septum" EXACT [OBOL:automatic]
synonym: "ventricular septum cardiac muscle" EXACT [OBOL:automatic]
synonym: "ventricular septum cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "ventricular septum cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "ventricular septum cardiac muscle tissue" EXACT [OBOL:automatic]
synonym: "ventricular septum heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "ventricular septum heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "ventricular septum heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "ventricular septum heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "ventricular septum muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "ventricular septum muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "ventricular septum muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "ventricular septum muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "ventricular septum muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "ventricular septum muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "ventricular septum muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "ventricular septum myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "ventricular septum myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "ventricular septum textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "ventricular septum textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "ventricular septum textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "ventricular septum textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "ventricular septum textus muscularis of myocardium" EXACT [OBOL:automatic]
xref: EMAPA:17335
xref: FMA:84084
xref: HOG:0000999
is_a: UBERON:0004492 ! implied link automatically realized ! cardiac muscle tissue of cardiac septum
is_a: UBERON:0004667 ! implied link automatically realized ! interventricular septum muscular part
relationship: part_of UBERON:0002094
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002094 ! interventricular septum
[Term]
id: UBERON:0003384
name: skeletal muscle of pharynx
def: "A portion of skeletal muscle tissue that is part of a pharynx [Obol]." [OBOL:automatic]
synonym: "pharynx skeletal muscle" EXACT [OBOL:automatic]
synonym: "pharynx skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of pharynx" EXACT [OBOL:automatic]
xref: EMAPA:18963
is_a: UBERON:0004830 ! implied link automatically realized ! respiratory system skeletal muscle
relationship: part_of UBERON:0001042
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0003385
name: skeletal muscle of mesenchyme
def: "A portion of skeletal muscle tissue that is part of a mesenchyme [Obol]." [OBOL:automatic]
synonym: "mesenchyme skeletal muscle" EXACT [OBOL:automatic]
synonym: "mesenchyme skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:19066
xref: EMAPA:19071
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
relationship: part_of UBERON:0003104
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0003104 ! mesenchyme
[Term]
id: UBERON:0003386
name: smooth muscle of eye
def: "A portion of smooth muscle tissue that is part of a eye [Obol]." [OBOL:automatic]
xref: EMAPA:18807
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
relationship: part_of UBERON:0000970
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0003387
name: smooth muscle of trachea
alt_id: UBERON:0004244
def: "A portion of smooth muscle tissue that is part of a trachea [Obol]." [OBOL:automatic]
xref: BTO:0001391
xref: EMAPA:19192
xref: FMA:262010
xref: MA:0001863
is_a: UBERON:0004233 ! implied link automatically realized ! lower respiratory tract smooth muscle
relationship: part_of UBERON:0003126
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0003388
name: mesothelium of pericardial cavity
def: "A mesothelium that is part of a pericardial cavity [Obol]." [OBOL:automatic]
synonym: "cavity of pericardial sac meso-epithelium" EXACT [OBOL:automatic]
synonym: "cavity of pericardial sac mesothelium" EXACT [OBOL:automatic]
synonym: "meso-epithelium of cavity of pericardial sac" EXACT [OBOL:automatic]
synonym: "meso-epithelium of pericardial cavity" EXACT [OBOL:automatic]
synonym: "mesothelium of cavity of pericardial sac" EXACT [OBOL:automatic]
synonym: "pericardial cavity meso-epithelium" EXACT [OBOL:automatic]
synonym: "pericardial cavity mesothelium" EXACT [OBOL:automatic]
xref: EHDAA2:0001436
xref: EMAPA:18449
is_a: UBERON:0001136 ! implied link automatically realized ! mesothelium
relationship: part_of UBERON:0001074
intersection_of: UBERON:0001136 ! mesothelium
intersection_of: part_of UBERON:0001074 ! pericardial cavity
[Term]
id: UBERON:0003389
name: mesothelium of diaphragm
def: "A mesothelium that is part of a diaphragm [Obol]." [OBOL:automatic]
synonym: "diaphragm meso-epithelium" EXACT [OBOL:automatic]
synonym: "diaphragm mesothelium" EXACT [OBOL:automatic]
synonym: "meso-epithelium of diaphragm" EXACT [OBOL:automatic]
synonym: "meso-epithelium of thoracic diaphragm" EXACT [OBOL:automatic]
synonym: "mesothelium of thoracic diaphragm" EXACT [OBOL:automatic]
synonym: "thoracic diaphragm meso-epithelium" EXACT [OBOL:automatic]
synonym: "thoracic diaphragm mesothelium" EXACT [OBOL:automatic]
xref: EMAPA:18429
is_a: UBERON:0001136 ! implied link automatically realized ! mesothelium
is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium
relationship: part_of UBERON:0001103
intersection_of: UBERON:0001136 ! mesothelium
intersection_of: part_of UBERON:0001103 ! diaphragm
[Term]
id: UBERON:0003390
name: mesothelium of pleural cavity
def: "A mesothelium that is part of a pleural cavity [Obol]." [OBOL:automatic]
synonym: "meso-epithelium of pleural cavity" EXACT [OBOL:automatic]
synonym: "pleural cavity meso-epithelium" EXACT [OBOL:automatic]
synonym: "pleural cavity mesothelium" EXACT [OBOL:automatic]
xref: EHDAA2:0001476
xref: EMAPA:18463
is_a: UBERON:0001136 ! implied link automatically realized ! mesothelium
relationship: part_of UBERON:0002402
intersection_of: UBERON:0001136 ! mesothelium
intersection_of: part_of UBERON:0002402 ! pleural cavity
[Term]
id: UBERON:0003391
name: lip of upper jaw
def: "A lip that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "lip of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch lip" EXACT [OBOL:automatic]
synonym: "upper jaw lip" EXACT [OBOL:automatic]
xref: EMAPA:17925
is_a: UBERON:0001833 ! implied link automatically realized ! lip
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001709
intersection_of: UBERON:0001833 ! lip
intersection_of: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0003392
name: lip of lower jaw
def: "A lip that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "lip of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "lower jaw lip" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch lip" EXACT [OBOL:automatic]
xref: EMAPA:17909
is_a: UBERON:0001833 ! implied link automatically realized ! lip
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001710
intersection_of: UBERON:0001833 ! lip
intersection_of: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0003393
name: mesentery of urinary system
def: "A mesentery that is part of a urinary system [Obol]." [OBOL:automatic]
synonym: "excretory system mesentery" EXACT [OBOL:automatic]
synonym: "mesentery of excretory system" EXACT [OBOL:automatic]
synonym: "mesentery of renal system" EXACT [OBOL:automatic]
synonym: "mesentery of systema urinaria" EXACT [OBOL:automatic]
synonym: "renal system mesentery" EXACT [OBOL:automatic]
synonym: "systema urinaria mesentery" EXACT [OBOL:automatic]
synonym: "urinary system mesentery" EXACT [OBOL:automatic]
xref: EMAPA:17367
is_a: UBERON:0002095 ! implied link automatically realized ! mesentery
relationship: part_of UBERON:0001008
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0003394
name: mesentery of hindgut
def: "A mesentery that is part of a hindgut [Obol]." [OBOL:automatic]
synonym: "hindgut mesentery" EXACT [OBOL:automatic]
xref: EMAPA:16718
is_a: UBERON:0004854 ! implied link automatically realized ! gastrointestinal system mesentery
relationship: part_of UBERON:0001046
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001046 ! hindgut
[Term]
id: UBERON:0003395
name: mesentery of rectum
def: "A mesentery that is part of a rectum [Obol]." [OBOL:automatic]
synonym: "rectum mesentery" EXACT [OBOL:automatic]
xref: EMAPA:18664
xref: EMAPA:18929
is_a: UBERON:0001170 ! implied link automatically realized ! mesentery of small intestine
is_a: UBERON:0003334 ! implied link automatically realized ! serosa of rectum
relationship: part_of UBERON:0001052
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0003396
name: mesentery of colon
def: "A mesentery that is part of a colon [Obol]." [OBOL:automatic]
synonym: "colon mesentery" EXACT [OBOL:automatic]
synonym: "large bowel mesentery" EXACT [OBOL:automatic]
synonym: "mesentery of large bowel" EXACT [OBOL:automatic]
xref: EMAPA:18942
xref: FMA:14645
is_a: UBERON:0003335 ! implied link automatically realized ! serosa of colon
is_a: UBERON:0004854 ! implied link automatically realized ! gastrointestinal system mesentery
relationship: part_of UBERON:0001155
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0003397
name: mesentery of duodenum
def: "A mesentery that is part of a duodenum [Obol]." [OBOL:automatic]
synonym: "duodenum mesentery" EXACT [OBOL:automatic]
xref: EMAPA:19081
is_a: UBERON:0001170 ! implied link automatically realized ! mesentery of small intestine
is_a: UBERON:0003336 ! implied link automatically realized ! serosa of duodenum
relationship: part_of UBERON:0002114
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0002114 ! duodenum
[Term]
id: UBERON:0003398
name: mesentery of jejunum
def: "A mesentery that is part of a jejunum [Obol]." [OBOL:automatic]
synonym: "jejunal mesentery" EXACT []
synonym: "jejunum mesentery" EXACT []
synonym: "mesojejunum" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html]
xref: EMAPA:18670
xref: EMAPA:18937
xref: FMA:14651
is_a: UBERON:0001170 ! implied link automatically realized ! mesentery of small intestine
is_a: UBERON:0003337 ! implied link automatically realized ! serosa of jejunum
relationship: part_of UBERON:0002115
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0002115 ! jejunum
[Term]
id: UBERON:0003403
name: skin of forearm
def: "A zone of skin that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "antebrachial region skin" EXACT [OBOL:automatic]
synonym: "arm middle limb segment skin" EXACT [OBOL:automatic]
synonym: "arm zeugopod skin" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment skin" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod skin" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb skin" EXACT [OBOL:automatic]
synonym: "lower arm skin" EXACT [OBOL:automatic]
synonym: "lower segment of arm skin" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm skin" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region skin" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb skin" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment skin" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod skin" EXACT [OBOL:automatic]
synonym: "skin of antebrachial region" EXACT [OBOL:automatic]
synonym: "skin of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "skin of arm zeugopod" EXACT [OBOL:automatic]
synonym: "skin of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "skin of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "skin of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "skin of lower arm" EXACT [OBOL:automatic]
synonym: "skin of lower segment of arm" EXACT [OBOL:automatic]
synonym: "skin of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "skin of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "skin of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "skin of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "skin of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "skin of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "skin of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "skin of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "zeugopod of arm skin" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region skin" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb skin" EXACT [OBOL:automatic]
xref: EMAPA:18056
xref: FMA:38265
xref: MA:0000602
is_a: UBERON:0003531 ! implied link automatically realized ! forelimb skin
relationship: part_of UBERON:0002386
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0003404
name: lobar bronchus of right lung
def: "A lobar bronchus that is part of a right lung [Obol]." [OBOL:automatic]
synonym: "right lung lobar bronchus" EXACT [OBOL:automatic]
synonym: "right lung secondary bronchus" EXACT [OBOL:automatic]
synonym: "secondary bronchus of right lung" EXACT [OBOL:automatic]
xref: EMAPA:17664
is_a: UBERON:0002183 ! implied link automatically realized ! lobar bronchus
relationship: part_of UBERON:0002167
intersection_of: UBERON:0002183 ! lobar bronchus
intersection_of: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003405
name: lobar bronchus of left lung
def: "A lobar bronchus that is part of a left lung [Obol]." [OBOL:automatic]
synonym: "left lung lobar bronchus" EXACT [OBOL:automatic]
synonym: "left lung secondary bronchus" EXACT [OBOL:automatic]
synonym: "secondary bronchus of left lung" EXACT [OBOL:automatic]
xref: EMAPA:17656
is_a: UBERON:0002183 ! implied link automatically realized ! lobar bronchus
relationship: part_of UBERON:0002168
intersection_of: UBERON:0002183 ! lobar bronchus
intersection_of: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003406
name: cartilage of respiratory system
def: "A cartilage that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius cartilage" EXACT [OBOL:automatic]
synonym: "cartilage of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "respiratory system cartilage" EXACT [OBOL:automatic]
xref: EMAPA:18694
xref: MA:0001818
is_a: UBERON:0002418 ! implied link automatically realized ! cartilage
is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue
relationship: part_of UBERON:0001004
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003407
name: cartilage of nasal septum
def: "A cartilage that is part of a nasal septum [Obol]." [OBOL:automatic]
synonym: "nasal septum cartilage" EXACT [OBOL:automatic]
xref: EMAPA:25091
is_a: UBERON:0001823 ! implied link automatically realized ! nasal cartilage
relationship: part_of UBERON:0001706
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0001706 ! nasal septum
[Term]
id: UBERON:0003408
name: gland of gut
def: "A gland that is part of a digestive tract [Obol]." [OBOL:automatic]
synonym: "digestive tract gland" EXACT [OBOL:automatic]
synonym: "gland of digestive tract" EXACT [OBOL:automatic]
synonym: "gland of lower gastrointestinal tract" EXACT [OBOL:automatic]
synonym: "gut gland" EXACT [OBOL:automatic]
synonym: "lower gastrointestinal tract gland" EXACT [OBOL:automatic]
xref: EMAPA:18815
is_a: UBERON:0002530 ! implied link automatically realized ! gland
relationship: part_of UBERON:0001555
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0003409
name: gland of tongue
def: "A gland that is part of a tongue [Obol]." [OBOL:automatic]
synonym: "tongue gland" EXACT [OBOL:automatic]
xref: EMAPA:25097
is_a: UBERON:0003212 ! implied link automatically realized ! gustatory organ
is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut
relationship: part_of UBERON:0001723
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0003410
name: gland of oropharynx
def: "A gland that is part of a oropharynx [Obol]." [OBOL:automatic]
synonym: "gland of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "oral part of pharynx gland" EXACT [OBOL:automatic]
synonym: "oropharynx gland" EXACT [OBOL:automatic]
xref: EMAPA:25095
is_a: UBERON:0003295 ! implied link automatically realized ! gland of pharynx
relationship: part_of UBERON:0001729
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001729 ! oropharynx
[Term]
id: UBERON:0003411
name: mesenchyme of amnion
def: "A mesenchyme that is part of an amnion [Obol]." [OBOL:automatic]
synonym: "amnion mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:16265
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
relationship: part_of UBERON:0000305
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000305 ! amnion
[Term]
id: UBERON:0003412
name: mesenchyme of leg
def: "A mesenchyme that is part of a leg [Obol]." [OBOL:automatic]
synonym: "leg mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:17255
is_a: UBERON:0003860 ! implied link automatically realized ! hindlimb mesenchyme
relationship: part_of UBERON:0000978
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003413
name: mesenchyme of arm
def: "A mesenchyme that is part of an arm [Obol]." [OBOL:automatic]
synonym: "arm mesenchyme" EXACT [OBOL:automatic]
synonym: "brachial region mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of brachial region" EXACT [OBOL:automatic]
synonym: "mesenchyme of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:17244
is_a: UBERON:0003859 ! implied link automatically realized ! forelimb mesenchyme
relationship: part_of UBERON:0001460
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003414
name: mesenchyme of mandible
def: "A mesenchyme that is part of a mandible [Obol]." [OBOL:automatic]
synonym: "bone of lower jaw mesenchyme" EXACT [OBOL:automatic]
synonym: "bone of ventral mandibular arch mesenchyme" EXACT [OBOL:automatic]
synonym: "bone organ of lower jaw mesenchyme" EXACT [OBOL:automatic]
synonym: "bone organ of ventral mandibular arch mesenchyme" EXACT [OBOL:automatic]
synonym: "lower jaw bone mesenchyme" EXACT [OBOL:automatic]
synonym: "lower jaw bone organ mesenchyme" EXACT [OBOL:automatic]
synonym: "mandible mesenchyme" EXACT [OBOL:automatic]
synonym: "mandibulla mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of bone of lower jaw" EXACT [OBOL:automatic]
synonym: "mesenchyme of bone of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "mesenchyme of bone organ of lower jaw" EXACT [OBOL:automatic]
synonym: "mesenchyme of bone organ of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower jaw bone" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower jaw bone organ" EXACT [OBOL:automatic]
synonym: "mesenchyme of mandibulla" EXACT [OBOL:automatic]
synonym: "mesenchyme of ventral mandibular arch bone" EXACT [OBOL:automatic]
synonym: "mesenchyme of ventral mandibular arch bone organ" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch bone mesenchyme" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch bone organ mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:17912
is_a: UBERON:0003324 ! implied link automatically realized ! mesenchyme of lower jaw
relationship: part_of UBERON:0001684
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001684 ! mandible
[Term]
id: UBERON:0003415
name: mesenchyme of nasal septum
def: "A mesenchyme that is part of a nasal septum [Obol]." [OBOL:automatic]
synonym: "nasal septum mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18443
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0001706
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001706 ! nasal septum
[Term]
id: UBERON:0003416
name: mesenchyme of tongue
def: "A mesenchyme that is part of a tongue [Obol]." [OBOL:automatic]
synonym: "tongue mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:17882
xref: EMAPA:18878
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
is_a: UBERON:0005253 ! implied link automatically realized ! head mesenchyme
relationship: part_of UBERON:0001723
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0003417
name: mesenchyme of soft palate
def: "A mesenchyme that is part of a soft palate [Obol]." [OBOL:automatic]
synonym: "soft palate mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18951
is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
is_a: UBERON:0005253 ! implied link automatically realized ! head mesenchyme
relationship: part_of UBERON:0001733
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001733 ! soft palate
[Term]
id: UBERON:0003418
name: mesenchyme of submandibular gland
def: "A mesenchyme that is part of a submandibular gland [Obol]." [OBOL:automatic]
synonym: "submandibular gland mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18814
xref: HOG:0001110
is_a: UBERON:0005253 ! implied link automatically realized ! head mesenchyme
relationship: part_of UBERON:0001736
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001736 ! submandibular gland
[Term]
id: UBERON:0003419
name: mesenchyme of parotid
def: "A mesenchyme that is part of a parotid gland [Obol]." [OBOL:automatic]
synonym: "mesenchyme of parotid gland" EXACT [OBOL:automatic]
synonym: "parotid gland mesenchyme" EXACT [OBOL:automatic]
synonym: "parotid mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18539
xref: HOG:0001435
is_a: UBERON:0005253 ! implied link automatically realized ! head mesenchyme
relationship: part_of UBERON:0001831
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001831 ! parotid gland
[Term]
id: UBERON:0003420
name: mesenchyme of sublingual gland
def: "A mesenchyme that is part of a sublingual gland [Obol]." [OBOL:automatic]
synonym: "ductus sublingualis mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of ductus sublingualis" EXACT [OBOL:automatic]
synonym: "mesenchyme of Rivinus'gland" EXACT [OBOL:automatic]
synonym: "Rivinus'gland mesenchyme" EXACT [OBOL:automatic]
synonym: "sublingual gland mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18811
xref: HOG:0001106
is_a: UBERON:0005253 ! implied link automatically realized ! head mesenchyme
relationship: part_of UBERON:0001832
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001832 ! sublingual gland
[Term]
id: UBERON:0003421
name: mesenchyme of vomeronasal organ
def: "A mesenchyme that is part of a vomeronasal organ [Obol]." [OBOL:automatic]
synonym: "Jacobson's organ mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of Jacobson's organ" EXACT [OBOL:automatic]
synonym: "vomeronasal organ mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18445
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0002255
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002255 ! vomeronasal organ
[Term]
id: UBERON:0003422
name: mesenchyme of umbilical cord
def: "A mesenchyme that is part of a umbilical cord [Obol]." [OBOL:automatic]
synonym: "umbilical cord mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:26127
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
relationship: part_of UBERON:0002331
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002331 ! umbilical cord
[Term]
id: UBERON:0003423
name: mesenchyme of chorion
def: "A mesenchyme that is part of a chorion [Obol]." [OBOL:automatic]
synonym: "chorion (vertebrates) mesenchyme" EXACT [OBOL:automatic]
synonym: "chorion mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of chorion (vertebrates)" EXACT [OBOL:automatic]
xref: EMAPA:16266
is_a: UBERON:0003315 ! implied link automatically realized ! mesenchyme of ovary
relationship: part_of UBERON:0003124
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003124 ! chorion
[Term]
id: UBERON:0003424
name: mesenchyme of hard palate
def: "A mesenchyme that is part of a hard palate [Obol]." [OBOL:automatic]
synonym: "hard palate mesenchyme" EXACT [OBOL:automatic]
xref: EMAPA:18954
is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
is_a: UBERON:0005253 ! implied link automatically realized ! head mesenchyme
relationship: part_of UBERON:0003216
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003216 ! hard palate
[Term]
id: UBERON:0003425
name: renal lymph node
def: "A lymph node that is part of a kidney [Obol]." [OBOL:automatic]
synonym: "kidney lymph node" EXACT [OBOL:automatic]
synonym: "lymph node of kidney" EXACT [OBOL:automatic]
xref: MA:0002882
is_a: UBERON:0002507 ! implied link automatically realized ! abdominal lymph node
relationship: part_of UBERON:0002113
intersection_of: UBERON:0000029 ! lymph node
intersection_of: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0003426
name: dermis adipose tissue
def: "An adipose tissue that is part of a dermis [Obol]." [OBOL:automatic]
synonym: "adipose tissue of dermis" EXACT [OBOL:automatic]
synonym: "dermis fat tissue" EXACT [OBOL:automatic]
synonym: "dermis fatty tissue" EXACT [OBOL:automatic]
synonym: "fat tissue of dermis" EXACT [OBOL:automatic]
synonym: "fatty tissue of dermis" EXACT [OBOL:automatic]
xref: MA:0000798
is_a: UBERON:0001013 ! implied link automatically realized ! adipose tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002067
intersection_of: UBERON:0001013 ! adipose tissue
intersection_of: part_of UBERON:0002067 ! dermis
[Term]
id: UBERON:0003427
name: abdominal fat pad
def: "the encapsulated adipose tissue in the abdomen." [MP:0000010]
synonym: "abdomen fat pad" EXACT [OBOL:automatic]
synonym: "fat pad of abdomen" EXACT [OBOL:automatic]
xref: MA:0000472
is_a: UBERON:0003916 ! implied link automatically realized ! fat pad
relationship: part_of UBERON:0000916
intersection_of: UBERON:0003916 ! fat pad
intersection_of: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003428
name: gonadal fat pad
def: "the encapsulated adipose tissue associated with the ovaries or testes." [MP:0005335]
synonym: "fat pad of gonad" EXACT [OBOL:automatic]
synonym: "fat pad of gonada" EXACT [OBOL:automatic]
synonym: "gonad fat pad" EXACT [OBOL:automatic]
synonym: "gonada fat pad" EXACT [OBOL:automatic]
xref: MA:0002547
is_a: UBERON:0003916 ! implied link automatically realized ! fat pad
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000991
intersection_of: UBERON:0003916 ! fat pad
intersection_of: part_of UBERON:0000991 ! gonad
[Term]
id: UBERON:0003429
name: abdomen nerve
def: "A nerve that is part of an abdomen [Obol]." [OBOL:automatic]
synonym: "nerve of abdomen" EXACT [OBOL:automatic]
xref: MA:0000521
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
relationship: part_of UBERON:0000916
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003430
name: neck nerve
def: "A nerve that is part of a neck [Obol]." [OBOL:automatic]
synonym: "neck (volume) nerve" EXACT [OBOL:automatic]
synonym: "nerve of neck" EXACT [OBOL:automatic]
synonym: "nerve of neck (volume)" EXACT [OBOL:automatic]
xref: MA:0000588
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
relationship: part_of UBERON:0000974
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0003431
name: leg nerve
def: "A nerve that is part of a leg [Obol]." [OBOL:automatic]
synonym: "nerve of leg" EXACT [OBOL:automatic]
xref: MA:0000673
is_a: UBERON:0003442 ! implied link automatically realized ! hindlimb nerve
relationship: part_of UBERON:0000978
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003432
name: chest nerve
def: "A nerve that is part of a chest [Obol]." [OBOL:automatic]
synonym: "anterior thoracic region nerve" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax nerve" EXACT [OBOL:automatic]
synonym: "front of thorax nerve" EXACT [OBOL:automatic]
synonym: "nerve of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "nerve of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "nerve of chest" EXACT [OBOL:automatic]
synonym: "nerve of front of thorax" EXACT [OBOL:automatic]
xref: MA:0000551
is_a: UBERON:0003824 ! implied link automatically realized ! thoracic segment nerve
relationship: part_of UBERON:0001443
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0003433
name: arm nerve
def: "A nerve that is part of an arm [Obol]." [OBOL:automatic]
synonym: "brachial region nerve" EXACT [OBOL:automatic]
synonym: "nerve of arm" EXACT [OBOL:automatic]
synonym: "nerve of brachial region" EXACT [OBOL:automatic]
synonym: "nerve of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb nerve" EXACT [OBOL:automatic]
xref: MA:0000595
is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve
relationship: part_of UBERON:0001460
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003434
name: wrist nerve
def: "A nerve that is part of a wrist [Obol]." [OBOL:automatic]
synonym: "carpal region nerve" EXACT [OBOL:automatic]
synonym: "nerve of carpal region" EXACT [OBOL:automatic]
synonym: "nerve of wrist" EXACT [OBOL:automatic]
xref: MA:0000637
is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve
relationship: part_of UBERON:0001462
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0003435
name: foot digit nerve
def: "A nerve that is part of a toe [Obol]." [OBOL:automatic]
synonym: "digit of foot nerve" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb nerve" EXACT [OBOL:automatic]
synonym: "digitus pedis nerve" EXACT [OBOL:automatic]
synonym: "nerve of digit of foot" EXACT [OBOL:automatic]
synonym: "nerve of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "nerve of digitus pedis" EXACT [OBOL:automatic]
synonym: "nerve of foot digit" EXACT [OBOL:automatic]
synonym: "nerve of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "nerve of toe" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit nerve" EXACT [OBOL:automatic]
synonym: "toe nerve" EXACT [OBOL:automatic]
xref: MA:0000649
is_a: UBERON:0003445 ! implied link automatically realized ! foot nerve
relationship: part_of UBERON:0001466
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0003436
name: shoulder nerve
def: "A nerve that is part of a shoulder [Obol]." [OBOL:automatic]
synonym: "nerve of shoulder" EXACT [OBOL:automatic]
xref: MA:0000634
is_a: UBERON:0003432 ! implied link automatically realized ! chest nerve
is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001467
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003437
name: eyelid nerve
def: "A nerve that is part of a eyelid [Obol]." [OBOL:automatic]
synonym: "blepharon nerve" EXACT [OBOL:automatic]
synonym: "nerve of blepharon" EXACT [OBOL:automatic]
synonym: "nerve of eyelid" EXACT [OBOL:automatic]
xref: MA:0001255
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
relationship: part_of UBERON:0001711
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0003438
name: iris nerve
def: "A nerve that is part of a iris [Obol]." [OBOL:automatic]
synonym: "nerve of iris" EXACT [OBOL:automatic]
xref: MA:0001291
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
relationship: part_of UBERON:0001769
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0003439
name: trunk nerve
def: "A nerve that is part of a trunk [Obol]." [OBOL:automatic]
synonym: "nerve of torso" EXACT [OBOL:automatic]
synonym: "nerve of trunk" EXACT [OBOL:automatic]
synonym: "torso nerve" EXACT [OBOL:automatic]
xref: MA:0000515
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
relationship: part_of UBERON:0002100
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0003440
name: limb nerve
def: "A nerve that is part of a limb [Obol]." [OBOL:automatic]
synonym: "nerve of limb" EXACT [OBOL:automatic]
xref: MA:0000693
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
relationship: part_of UBERON:0002101
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003441
name: forelimb nerve
def: "A nerve that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb nerve" EXACT [OBOL:automatic]
synonym: "fore limb nerve" EXACT [OBOL:automatic]
synonym: "nerve of anteriormost limb" EXACT [OBOL:automatic]
synonym: "nerve of fore limb" EXACT [OBOL:automatic]
synonym: "nerve of forelimb" EXACT [OBOL:automatic]
synonym: "nerve of superior member" EXACT [OBOL:automatic]
synonym: "nerve of upper extremity" EXACT [OBOL:automatic]
synonym: "superior member nerve" EXACT [OBOL:automatic]
synonym: "upper extremity nerve" EXACT [OBOL:automatic]
xref: MA:0000616
is_a: UBERON:0003440 ! implied link automatically realized ! limb nerve
relationship: part_of UBERON:0002102
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003442
name: hindlimb nerve
def: "A nerve that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "hind limb nerve" EXACT [OBOL:automatic]
synonym: "inferior member nerve" EXACT [OBOL:automatic]
synonym: "lower extremity nerve" EXACT [OBOL:automatic]
synonym: "nerve of hind limb" EXACT [OBOL:automatic]
synonym: "nerve of hindlimb" EXACT [OBOL:automatic]
synonym: "nerve of inferior member" EXACT [OBOL:automatic]
synonym: "nerve of lower extremity" EXACT [OBOL:automatic]
xref: MA:0000664
is_a: UBERON:0003440 ! implied link automatically realized ! limb nerve
relationship: part_of UBERON:0002103
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003443
name: thoracic cavity nerve
def: "A nerve that is part of a thoracic cavity [Obol]." [OBOL:automatic]
synonym: "cavity of chest nerve" EXACT [OBOL:automatic]
synonym: "cavity of thorax nerve" EXACT [OBOL:automatic]
synonym: "chest cavity nerve" EXACT [OBOL:automatic]
synonym: "nerve of cavity of chest" EXACT [OBOL:automatic]
synonym: "nerve of cavity of thorax" EXACT [OBOL:automatic]
synonym: "nerve of chest cavity" EXACT [OBOL:automatic]
synonym: "nerve of pectoral cavity" EXACT [OBOL:automatic]
synonym: "nerve of thoracic cavity" EXACT [OBOL:automatic]
synonym: "pectoral cavity nerve" EXACT [OBOL:automatic]
xref: MA:0000556
is_a: UBERON:0003824 ! implied link automatically realized ! thoracic segment nerve
relationship: part_of UBERON:0002224
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003444
name: pelvis nerve
def: "A nerve that is part of a pelvis [Obol]." [OBOL:automatic]
synonym: "nerve of pelvis" EXACT [OBOL:automatic]
xref: MA:0000542
is_a: UBERON:0003439 ! implied link automatically realized ! trunk nerve
relationship: part_of UBERON:0002355
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0003445
name: foot nerve
def: "A nerve that is part of a foot [Obol]." [OBOL:automatic]
synonym: "autopod of hind limb nerve" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb nerve" EXACT [OBOL:automatic]
synonym: "autopod of inferior member nerve" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity nerve" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb nerve" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb nerve" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member nerve" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity nerve" EXACT [OBOL:automatic]
synonym: "hind limb autopod nerve" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment nerve" EXACT [OBOL:automatic]
synonym: "hindlimb autopod nerve" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment nerve" EXACT [OBOL:automatic]
synonym: "inferior member autopod nerve" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment nerve" EXACT [OBOL:automatic]
synonym: "lower extremity autopod nerve" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment nerve" EXACT [OBOL:automatic]
synonym: "nerve of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "nerve of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "nerve of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "nerve of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "nerve of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "nerve of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "nerve of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "nerve of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "nerve of foot" EXACT [OBOL:automatic]
synonym: "nerve of hind limb autopod" EXACT [OBOL:automatic]
synonym: "nerve of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "nerve of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "nerve of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "nerve of inferior member autopod" EXACT [OBOL:automatic]
synonym: "nerve of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "nerve of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "nerve of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "nerve of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb nerve" EXACT [OBOL:automatic]
xref: MA:0000653
is_a: UBERON:0003442 ! implied link automatically realized ! hindlimb nerve
relationship: part_of UBERON:0002387
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0003446
name: ankle nerve
def: "A nerve that is part of an ankle [Obol]." [OBOL:automatic]
synonym: "nerve of ankle" EXACT [OBOL:automatic]
xref: MA:0000640
is_a: UBERON:0003442 ! implied link automatically realized ! hindlimb nerve
relationship: part_of UBERON:0002388
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002388 ! ankle
[Term]
id: UBERON:0003447
name: hand digit nerve
def: "A nerve that is part of a finger [Obol]." [OBOL:automatic]
synonym: "digit of hand nerve" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb nerve" EXACT [OBOL:automatic]
synonym: "digitus manus nerve" EXACT [OBOL:automatic]
synonym: "finger nerve" EXACT [OBOL:automatic]
synonym: "nerve of digit of hand" EXACT [OBOL:automatic]
synonym: "nerve of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "nerve of digitus manus" EXACT [OBOL:automatic]
synonym: "nerve of finger" EXACT [OBOL:automatic]
synonym: "nerve of hand digit" EXACT [OBOL:automatic]
synonym: "nerve of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit nerve" EXACT [OBOL:automatic]
xref: MA:0000625
is_a: UBERON:0003448 ! implied link automatically realized ! hand nerve
relationship: part_of UBERON:0002389
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0003448
name: hand nerve
def: "A nerve that is part of a hand [Obol]." [OBOL:automatic]
synonym: "arm autopod nerve" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment nerve" EXACT [OBOL:automatic]
synonym: "autopod of arm nerve" EXACT [OBOL:automatic]
synonym: "autopod of brachial region nerve" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb nerve" EXACT [OBOL:automatic]
synonym: "brachial region autopod nerve" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment nerve" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm nerve" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region nerve" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb nerve" EXACT [OBOL:automatic]
synonym: "nerve of arm autopod" EXACT [OBOL:automatic]
synonym: "nerve of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "nerve of autopod of arm" EXACT [OBOL:automatic]
synonym: "nerve of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "nerve of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "nerve of brachial region autopod" EXACT [OBOL:automatic]
synonym: "nerve of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "nerve of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "nerve of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "nerve of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "nerve of hand" EXACT [OBOL:automatic]
synonym: "nerve of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "nerve of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "nerve of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod nerve" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment nerve" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb nerve" EXACT [OBOL:automatic]
xref: MA:0000629
is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve
relationship: part_of UBERON:0002398
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0003449
name: tail intervertebral disc
def: "A intervertebral disk that is part of a tail [Obol]." [OBOL:automatic]
synonym: "intervertebral disc of post-vent region" EXACT [OBOL:automatic]
synonym: "intervertebral disc of tail" EXACT [OBOL:automatic]
synonym: "intervertebral disk of post-vent region" EXACT [OBOL:automatic]
synonym: "intervertebral disk of tail" EXACT [OBOL:automatic]
synonym: "post-vent region intervertebral disc" EXACT [OBOL:automatic]
synonym: "post-vent region intervertebral disk" EXACT [OBOL:automatic]
synonym: "post-vent region spinal disc" EXACT [OBOL:automatic]
synonym: "spinal disc of post-vent region" EXACT [OBOL:automatic]
synonym: "spinal disc of tail" EXACT [OBOL:automatic]
synonym: "tail intervertebral disk" EXACT [OBOL:automatic]
synonym: "tail spinal disc" EXACT [OBOL:automatic]
xref: MA:0000698
is_a: UBERON:0001066 ! implied link automatically realized ! intervertebral disk
relationship: part_of UBERON:0002415
intersection_of: UBERON:0001066 ! intervertebral disk
intersection_of: part_of UBERON:0002415 ! tail
[Term]
id: UBERON:0003450
name: upper jaw incisor
def: "A incisor tooth that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "incisor of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "incisor of upper jaw" EXACT [OBOL:automatic]
synonym: "incisor tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "incisor tooth of upper jaw" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch incisor" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch incisor tooth" EXACT [OBOL:automatic]
synonym: "upper jaw incisor tooth" EXACT [OBOL:automatic]
xref: EHDAA2:0002121
xref: MA:0001601
xref: ncithesaurus:Upper_Jaw_Incisor
is_a: UBERON:0001098 ! implied link automatically realized ! incisor tooth
is_a: UBERON:0003267 ! implied link automatically realized ! tooth of upper jaw
relationship: part_of UBERON:0001709
intersection_of: UBERON:0001098 ! incisor tooth
intersection_of: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0003451
name: lower jaw incisor
def: "A incisor tooth that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "incisor of lower jaw" EXACT [OBOL:automatic]
synonym: "incisor of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "incisor tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "incisor tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "lower jaw incisor tooth" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch incisor" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch incisor tooth" EXACT [OBOL:automatic]
xref: EHDAA2:0001021
xref: MA:0001600
xref: ncithesaurus:Lower_Jaw_Incisor
is_a: UBERON:0001098 ! implied link automatically realized ! incisor tooth
is_a: UBERON:0003268 ! implied link automatically realized ! tooth of lower jaw
relationship: part_of UBERON:0001710
intersection_of: UBERON:0001098 ! incisor tooth
intersection_of: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0003452
name: trabecula carnea cardiac muscle tissue
def: "A portion of cardiac muscle tissue that is part of a trabecula carnea [Obol]." [OBOL:automatic]
synonym: "cardiac muscle muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "cardiac muscle of trabecula carnea" EXACT [OBOL:automatic]
synonym: "cardiac muscle textus muscularis of trabecula carnea" EXACT [OBOL:automatic]
synonym: "cardiac muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "heart muscle muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "heart muscle textus muscularis of trabecula carnea" EXACT [OBOL:automatic]
synonym: "heart myocardium muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "heart myocardium textus muscularis of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle of heart muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle of heart textus muscularis of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle tissue of cardiac muscle of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart muscle of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle tissue of heart myocardium of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle tissue of muscle of heart of trabecula carnea" EXACT [OBOL:automatic]
synonym: "muscle tissue of myocardium of trabecula carnea" EXACT [OBOL:automatic]
synonym: "myocardium muscle tissue of trabecula carnea" EXACT [OBOL:automatic]
synonym: "myocardium textus muscularis of trabecula carnea" EXACT [OBOL:automatic]
synonym: "textus muscularis of cardiac muscle of trabecula carnea" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart muscle of trabecula carnea" EXACT [OBOL:automatic]
synonym: "textus muscularis of heart myocardium of trabecula carnea" EXACT [OBOL:automatic]
synonym: "textus muscularis of muscle of heart of trabecula carnea" EXACT [OBOL:automatic]
synonym: "textus muscularis of myocardium of trabecula carnea" EXACT [OBOL:automatic]
synonym: "trabecula carnea cardiac muscle" EXACT [OBOL:automatic]
synonym: "trabecula carnea cardiac muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "trabecula carnea cardiac muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "trabecula carnea heart muscle muscle tissue" EXACT [OBOL:automatic]
synonym: "trabecula carnea heart muscle textus muscularis" EXACT [OBOL:automatic]
synonym: "trabecula carnea heart myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "trabecula carnea heart myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle of heart muscle tissue" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle of heart textus muscularis" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle tissue of cardiac muscle" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle tissue of heart muscle" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle tissue of heart myocardium" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle tissue of muscle of heart" EXACT [OBOL:automatic]
synonym: "trabecula carnea muscle tissue of myocardium" EXACT [OBOL:automatic]
synonym: "trabecula carnea myocardium muscle tissue" EXACT [OBOL:automatic]
synonym: "trabecula carnea myocardium textus muscularis" EXACT [OBOL:automatic]
synonym: "trabecula carnea textus muscularis of cardiac muscle" EXACT [OBOL:automatic]
synonym: "trabecula carnea textus muscularis of heart muscle" EXACT [OBOL:automatic]
synonym: "trabecula carnea textus muscularis of heart myocardium" EXACT [OBOL:automatic]
synonym: "trabecula carnea textus muscularis of muscle of heart" EXACT [OBOL:automatic]
synonym: "trabecula carnea textus muscularis of myocardium" EXACT [OBOL:automatic]
xref: FMA:84428
xref: MA:0002833
is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue
relationship: part_of UBERON:0002511
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002511 ! trabecula carnea
[Term]
id: UBERON:0003453
name: large intestine Peyer's patch
def: "A Peyer ' s patch that is part of a large intestine [Obol]." [OBOL:automatic]
synonym: "large intestine Peyer's patch" EXACT [OBOL:automatic]
synonym: "Peyer's patch of large intestine" EXACT [OBOL:automatic]
xref: MA:0001550
is_a: UBERON:0001211 ! implied link automatically realized ! Peyer's patch
relationship: part_of UBERON:0000059
intersection_of: UBERON:0001211 ! Peyer's patch
intersection_of: part_of UBERON:0000059 ! large intestine
[Term]
id: UBERON:0003454
name: small intestine Peyer's patch
def: "nodular lymphoid structures on the serosal surface of the small intestine." []
synonym: "Aggregated lymphoid follicle of small intestine" EXACT []
synonym: "Peyer's patch of small bowel" EXACT [OBOL:automatic]
synonym: "Peyer's patch of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel Peyer's patch" EXACT [OBOL:automatic]
synonym: "small intestine Peyer's patch" EXACT [OBOL:automatic]
xref: FMA:15054
xref: MA:0001557
is_a: UBERON:0001211 ! implied link automatically realized ! Peyer's patch
relationship: part_of UBERON:0002108
intersection_of: UBERON:0001211 ! Peyer's patch
intersection_of: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0003455
name: inner renal medulla loop of henle
def: "A loop of Henle that is part of a inner medulla of kidney [Obol]." [OBOL:automatic]
synonym: "Henle loop of inner medulla of kidney" EXACT [OBOL:automatic]
synonym: "Henle loop of inner renal medulla" EXACT [OBOL:automatic]
synonym: "Henle loop of inner zone of medulla of kidney" EXACT [OBOL:automatic]
synonym: "Henle loop of inner zone of renal medulla" EXACT [OBOL:automatic]
synonym: "henle's loop of inner medulla of kidney" EXACT [OBOL:automatic]
synonym: "henle's loop of inner renal medulla" EXACT [OBOL:automatic]
synonym: "henle's loop of inner zone of medulla of kidney" EXACT [OBOL:automatic]
synonym: "henle's loop of inner zone of renal medulla" EXACT [OBOL:automatic]
synonym: "inner medulla of kidney Henle loop" EXACT [OBOL:automatic]
synonym: "inner medulla of kidney henle's loop" EXACT [OBOL:automatic]
synonym: "inner medulla of kidney loop of Henle" EXACT [OBOL:automatic]
synonym: "inner renal medulla Henle loop" EXACT [OBOL:automatic]
synonym: "inner renal medulla henle's loop" EXACT [OBOL:automatic]
synonym: "inner renal medulla loop of Henle" EXACT [OBOL:automatic]
synonym: "inner zone of medulla of kidney Henle loop" EXACT [OBOL:automatic]
synonym: "inner zone of medulla of kidney henle's loop" EXACT [OBOL:automatic]
synonym: "inner zone of medulla of kidney loop of Henle" EXACT [OBOL:automatic]
synonym: "inner zone of renal medulla Henle loop" EXACT [OBOL:automatic]
synonym: "inner zone of renal medulla henle's loop" EXACT [OBOL:automatic]
synonym: "inner zone of renal medulla loop of Henle" EXACT [OBOL:automatic]
synonym: "loop of Henle of inner medulla of kidney" EXACT [OBOL:automatic]
synonym: "loop of Henle of inner renal medulla" EXACT [OBOL:automatic]
synonym: "loop of Henle of inner zone of medulla of kidney" EXACT [OBOL:automatic]
synonym: "loop of Henle of inner zone of renal medulla" EXACT [OBOL:automatic]
xref: MA:0002623
is_a: UBERON:0001288 ! implied link automatically realized ! loop of Henle
relationship: part_of UBERON:0001294
intersection_of: UBERON:0001288 ! loop of Henle
intersection_of: part_of UBERON:0001294 ! inner medulla of kidney
[Term]
id: UBERON:0003456
name: respiratory system lymphatic vessel
def: "A lymphatic vessel that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius lymph vessel" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius lymphatic vessel" EXACT [OBOL:automatic]
synonym: "lymph vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "lymph vessel of respiratory system" EXACT [OBOL:automatic]
synonym: "lymphatic vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "lymphatic vessel of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system lymph vessel" EXACT [OBOL:automatic]
xref: MA:0001824
is_a: UBERON:0001473 ! implied link automatically realized ! lymphatic vessel
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001473 ! lymphatic vessel
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003457
name: head bone
def: "A bone that is part of a head [Obol]." [OBOL:automatic]
synonym: "adult head bone" EXACT [OBOL:automatic]
synonym: "adult head bone organ" EXACT [OBOL:automatic]
synonym: "bone of adult head" EXACT [OBOL:automatic]
synonym: "bone of head" EXACT [OBOL:automatic]
synonym: "bone organ of adult head" EXACT [OBOL:automatic]
synonym: "bone organ of head" EXACT [OBOL:automatic]
synonym: "head bone organ" EXACT [OBOL:automatic]
xref: MA:0000576
is_a: UBERON:0001474 ! implied link automatically realized ! bone
relationship: part_of UBERON:0000033
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003458
name: neck bone
def: "A bone that is part of a neck [Obol]." [OBOL:automatic]
synonym: "bone of neck" EXACT [OBOL:automatic]
synonym: "bone of neck (volume)" EXACT [OBOL:automatic]
synonym: "bone organ of neck" EXACT [OBOL:automatic]
synonym: "bone organ of neck (volume)" EXACT [OBOL:automatic]
synonym: "neck (volume) bone" EXACT [OBOL:automatic]
synonym: "neck (volume) bone organ" EXACT [OBOL:automatic]
synonym: "neck bone organ" EXACT [OBOL:automatic]
xref: MA:0000584
xref: OpenCyc:Mx4rvnpJSJwpEbGdrcN5Y29ycA
is_a: UBERON:0001474 ! implied link automatically realized ! bone
relationship: part_of UBERON:0000974
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0003459
name: chest bone
def: "A bone that is part of a chest [Obol]." [OBOL:automatic]
synonym: "anterior thoracic region bone" EXACT [OBOL:automatic]
synonym: "anterior thoracic region bone organ" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax bone" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax bone organ" EXACT [OBOL:automatic]
synonym: "bone of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "bone of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "bone of chest" EXACT [OBOL:automatic]
synonym: "bone of front of thorax" EXACT [OBOL:automatic]
synonym: "bone organ of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "bone organ of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "bone organ of chest" EXACT [OBOL:automatic]
synonym: "bone organ of front of thorax" EXACT [OBOL:automatic]
synonym: "chest bone organ" EXACT [OBOL:automatic]
synonym: "front of thorax bone" EXACT [OBOL:automatic]
synonym: "front of thorax bone organ" EXACT [OBOL:automatic]
xref: MA:0000547
is_a: UBERON:0003827 ! implied link automatically realized ! thoracic segment bone
is_a: UBERON:0005175 ! implied link automatically realized ! chest organ
relationship: part_of UBERON:0001443
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0003460
name: arm bone
def: "A bone that is part of an arm [Obol]." [OBOL:automatic]
synonym: "arm bone organ" EXACT [OBOL:automatic]
synonym: "bone of arm" EXACT [OBOL:automatic]
synonym: "bone of brachial region" EXACT [OBOL:automatic]
synonym: "bone of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of upper extremity" EXACT [GAID:178]
synonym: "bone organ of arm" EXACT [OBOL:automatic]
synonym: "bone organ of brachial region" EXACT [OBOL:automatic]
synonym: "bone organ of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "brachial region bone" EXACT [OBOL:automatic]
synonym: "brachial region bone organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb bone organ" EXACT [OBOL:automatic]
xref: GAID:178
xref: MA:0000592
xref: OpenCyc:Mx4rwKTXoJwpEbGdrcN5Y29ycA
is_a: UBERON:0002428 ! implied link automatically realized ! limb bone
relationship: part_of UBERON:0001460
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003461
name: shoulder bone
def: "A bone that is part of a shoulder [Obol]." [OBOL:automatic]
synonym: "bone of shoulder" EXACT [OBOL:automatic]
synonym: "bone organ of shoulder" EXACT [OBOL:automatic]
synonym: "shoulder bone organ" EXACT [OBOL:automatic]
xref: MA:0000631
is_a: UBERON:0002428 ! implied link automatically realized ! limb bone
is_a: UBERON:0003459 ! implied link automatically realized ! chest bone
relationship: part_of UBERON:0001467
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003462
name: viscerocranium bone
def: "A bone that is part of a viscerocranium [Obol]." [OBOL:automatic]
synonym: "bone of face subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "bone of facial skeleton" EXACT [OBOL:automatic]
synonym: "bone of subdivision of skeleton of face" EXACT [OBOL:automatic]
synonym: "bone of viscerocranium" EXACT [OBOL:automatic]
synonym: "bone organ of face subdivision of skeleton" EXACT [OBOL:automatic]
synonym: "bone organ of facial skeleton" EXACT [OBOL:automatic]
synonym: "bone organ of subdivision of skeleton of face" EXACT [OBOL:automatic]
synonym: "bone organ of viscerocranium" EXACT [OBOL:automatic]
synonym: "face subdivision of skeleton bone" EXACT [OBOL:automatic]
synonym: "face subdivision of skeleton bone organ" EXACT [OBOL:automatic]
synonym: "facial skeleton bone" EXACT [OBOL:automatic]
synonym: "facial skeleton bone organ" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of face bone" EXACT [OBOL:automatic]
synonym: "subdivision of skeleton of face bone organ" EXACT [OBOL:automatic]
synonym: "viscerocranium bone organ" EXACT [OBOL:automatic]
xref: MA:0001482
is_a: UBERON:0003457 ! implied link automatically realized ! head bone
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001704
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0003463
name: trunk bone
def: "A bone that is part of a trunk [Obol]." [OBOL:automatic]
synonym: "bone of torso" EXACT [OBOL:automatic]
synonym: "bone of trunk" EXACT [OBOL:automatic]
synonym: "bone organ of torso" EXACT [OBOL:automatic]
synonym: "bone organ of trunk" EXACT [OBOL:automatic]
synonym: "torso bone" EXACT [OBOL:automatic]
synonym: "torso bone organ" EXACT [OBOL:automatic]
synonym: "trunk bone organ" EXACT [OBOL:automatic]
xref: MA:0000512
is_a: UBERON:0001474 ! implied link automatically realized ! bone
is_a: UBERON:0005177 ! implied link automatically realized ! trunk organ
relationship: part_of UBERON:0002100
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0003464
name: hindlimb bone
def: "A bone that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "bone of hind limb" EXACT [OBOL:automatic]
synonym: "bone of hindlimb" EXACT [OBOL:automatic]
synonym: "bone of inferior member" EXACT [OBOL:automatic]
synonym: "bone of lower extremity" EXACT [OBOL:automatic]
synonym: "bone organ of hind limb" EXACT [OBOL:automatic]
synonym: "bone organ of hindlimb" EXACT [OBOL:automatic]
synonym: "bone organ of inferior member" EXACT [OBOL:automatic]
synonym: "bone organ of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb bone" EXACT [OBOL:automatic]
synonym: "hind limb bone organ" EXACT [OBOL:automatic]
synonym: "hindlimb bone organ" EXACT [OBOL:automatic]
synonym: "inferior member bone" EXACT [OBOL:automatic]
synonym: "inferior member bone organ" EXACT [OBOL:automatic]
synonym: "lower extremity bone" EXACT [OBOL:automatic]
synonym: "lower extremity bone organ" EXACT [OBOL:automatic]
xref: GAID:198
xref: MA:0000660
is_a: UBERON:0002428 ! implied link automatically realized ! limb bone
relationship: part_of UBERON:0002103
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003465
name: chondrocranium bone
alt_id: UBERON:0004762
def: "A bone that is part of a chondrocranium [Obol]." [OBOL:automatic]
comment: ZFA class made obsolete
synonym: "bone of chondrocranium" EXACT [OBOL:automatic]
synonym: "bone organ of chondrocranium" EXACT [OBOL:automatic]
synonym: "chondrocranium bone organ" EXACT [OBOL:automatic]
synonym: "endochondral neurocranium bone" EXACT [OBOL:automatic, UBERON:cjm]
xref: MA:0001478
xref: ZFA:0001544
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone
relationship: part_of UBERON:0002241
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0003466
name: lower arm bone
def: "A bone that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "antebrachial region bone" EXACT [OBOL:automatic]
synonym: "antebrachial region bone organ" EXACT [OBOL:automatic]
synonym: "arm middle limb segment bone" EXACT [OBOL:automatic]
synonym: "arm middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "arm zeugopod bone" EXACT [OBOL:automatic]
synonym: "arm zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "bone of antebrachial region" EXACT [OBOL:automatic]
synonym: "bone of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of arm zeugopod" EXACT [OBOL:automatic]
synonym: "bone of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "bone of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of lower arm" EXACT [OBOL:automatic]
synonym: "bone of lower segment of arm" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of antebrachial region" EXACT [OBOL:automatic]
synonym: "bone organ of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of arm zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of lower arm" EXACT [OBOL:automatic]
synonym: "bone organ of lower segment of arm" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment bone" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod bone" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb bone organ" EXACT [OBOL:automatic]
synonym: "lower arm bone organ" EXACT [OBOL:automatic]
synonym: "lower segment of arm bone" EXACT [OBOL:automatic]
synonym: "lower segment of arm bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb bone organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment bone" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod bone" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of arm bone" EXACT [OBOL:automatic]
synonym: "zeugopod of arm bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region bone" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb bone organ" EXACT [OBOL:automatic]
xref: MA:0000598
is_a: UBERON:0002428 ! implied link automatically realized ! limb bone
relationship: part_of UBERON:0002386
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0003467
name: sesamoid bone of gastrocnemius
def: "the small sesamoid bones situated behind the condyles of the femur." [MP:0009005]
synonym: "gastrocnemius sesamoid bone" EXACT [OBOL:automatic]
synonym: "m. gastrocnemius sesamoid bone" EXACT [OBOL:automatic]
synonym: "sesamoid bone of m. gastrocnemius" EXACT [OBOL:automatic]
xref: MA:0001378
is_a: UBERON:0001479 ! implied link automatically realized ! sesamoid bone
is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone
relationship: part_of UBERON:0001388
intersection_of: UBERON:0001479 ! sesamoid bone
intersection_of: part_of UBERON:0001388 ! gastrocnemius
[Term]
id: UBERON:0003468
name: ureteric artery
def: "An artery that is part of a ureter [Obol]." [OBOL:automatic]
xref: MA:0002074
is_a: UBERON:0001637 ! implied link automatically realized ! artery
relationship: part_of UBERON:0000056
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0000056 ! ureter
[Term]
id: UBERON:0003469
name: respiratory system artery
def: "An artery that is part of a respiratory system [Obol]." [OBOL:automatic]
xref: MA:0001804
is_a: UBERON:0001637 ! implied link automatically realized ! artery
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003470
name: artery of upper lip
def: "An artery that is part of a upper lip [Obol]." [OBOL:automatic]
xref: MA:0001917
is_a: UBERON:0001637 ! implied link automatically realized ! artery
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001834
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001834 ! upper lip
[Term]
id: UBERON:0003471
name: artery of lower lip
def: "An artery that is part of a lower lip [Obol]." [OBOL:automatic]
xref: MA:0001916
is_a: UBERON:0001637 ! implied link automatically realized ! artery
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001835
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001835 ! lower lip
[Term]
id: UBERON:0003472
name: cerebellar artery
def: "An artery that is part of a cerebellum [Obol]." [OBOL:automatic]
xref: EHDAA:5290
xref: EHDAA2:0000228
xref: MA:0001933
xref: ncithesaurus:Cerebellar_Artery
is_a: UBERON:0001637 ! implied link automatically realized ! artery
is_a: UBERON:0003499 ! implied link automatically realized ! brain blood vessel
relationship: part_of UBERON:0002037
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0003473
name: thoracic cavity artery
def: "An artery that is part of a thoracic cavity [Obol]." [OBOL:automatic]
xref: MA:0001902
is_a: UBERON:0001637 ! implied link automatically realized ! artery
is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel
relationship: part_of UBERON:0002224
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003474
name: meningeal artery
def: "An artery that is part of a meninx [Obol]." [OBOL:automatic]
xref: GAID:499
xref: MA:0002001
is_a: UBERON:0001637 ! implied link automatically realized ! artery
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002360
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0002360 ! meninx
[Term]
id: UBERON:0003475
name: ureteric vein
def: "A vein that is part of a ureter [Obol]." [OBOL:automatic]
synonym: "ureter vein" EXACT [OBOL:automatic]
synonym: "vein of ureter" EXACT [OBOL:automatic]
xref: MA:0002250
is_a: UBERON:0001638 ! implied link automatically realized ! vein
relationship: part_of UBERON:0000056
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0000056 ! ureter
[Term]
id: UBERON:0003476
name: respiratory system venous blood vessel
def: "A vein that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius vein" EXACT [OBOL:automatic]
synonym: "respiratory system vein" EXACT [OBOL:automatic]
synonym: "vein of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "vein of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001809
xref: MA:0001810
is_a: UBERON:0001638 ! implied link automatically realized ! vein
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003477
name: vein of upper lip
def: "A vein that is part of a upper lip [Obol]." [OBOL:automatic]
synonym: "upper lip vein" EXACT [OBOL:automatic]
xref: MA:0002255
is_a: UBERON:0001638 ! implied link automatically realized ! vein
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001834
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001834 ! upper lip
[Term]
id: UBERON:0003478
name: vein of lower lip
def: "A vein that is part of a lower lip [Obol]." [OBOL:automatic]
synonym: "lower lip vein" EXACT [OBOL:automatic]
xref: MA:0002253
is_a: UBERON:0001638 ! implied link automatically realized ! vein
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001835
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001835 ! lower lip
[Term]
id: UBERON:0003479
name: thoracic cavity vein
def: "A vein that is part of a thoracic cavity [Obol]." [OBOL:automatic]
synonym: "cavity of chest vein" EXACT [OBOL:automatic]
synonym: "cavity of thorax vein" EXACT [OBOL:automatic]
synonym: "chest cavity vein" EXACT [OBOL:automatic]
synonym: "pectoral cavity vein" EXACT [OBOL:automatic]
synonym: "vein of cavity of chest" EXACT [OBOL:automatic]
synonym: "vein of cavity of thorax" EXACT [OBOL:automatic]
synonym: "vein of chest cavity" EXACT [OBOL:automatic]
synonym: "vein of pectoral cavity" EXACT [OBOL:automatic]
synonym: "vein of thoracic cavity" EXACT [OBOL:automatic]
xref: MA:0001903
is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel
is_a: UBERON:0005194 ! implied link automatically realized ! thoracic vein
relationship: part_of UBERON:0002224
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003480
name: vein of clitoris
def: "A vein that is part of a clitoris [Obol]." [OBOL:automatic]
synonym: "clitoris vein" EXACT [OBOL:automatic]
xref: MA:0002252
is_a: UBERON:0001638 ! implied link automatically realized ! vein
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0002411
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002411 ! clitoris
[Term]
id: UBERON:0003481
name: tail vein
def: "A vein that is part of a tail [Obol]." [OBOL:automatic]
synonym: "post-vent region vein" EXACT [OBOL:automatic]
synonym: "vein of post-vent region" EXACT [OBOL:automatic]
synonym: "vein of tail" EXACT [OBOL:automatic]
xref: MA:0002233
xref: XAO:0000393
is_a: UBERON:0001638 ! implied link automatically realized ! vein
is_a: UBERON:0003524 ! implied link automatically realized ! tail blood vessel
relationship: part_of UBERON:0002415
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002415 ! tail
[Term]
id: UBERON:0003482
name: vein of trabecular bone
def: "A portion of vein that is part of a trabecular bone tissue [Obol]." [OBOL:automatic]
synonym: "spongy bone vein" EXACT [OBOL:automatic]
synonym: "trabecular bone tissue vein" EXACT [OBOL:automatic]
synonym: "trabecular bone vein" EXACT [OBOL:automatic]
synonym: "vein of spongy bone" EXACT [OBOL:automatic]
synonym: "vein of trabecular bone tissue" EXACT [OBOL:automatic]
xref: MA:0002254
is_a: UBERON:0001638 ! implied link automatically realized ! vein
relationship: part_of UBERON:0002483
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002483 ! trabecular bone tissue
[Term]
id: UBERON:0003483
name: thymus lymphoid tissue
def: "A portion of lymphoid tissue that is part of a thymus [Obol]." [OBOL:automatic]
synonym: "lymphatic tissue of thymus" EXACT [OBOL:automatic]
synonym: "lymphatic tissue of thymus gland" EXACT [OBOL:automatic]
synonym: "lymphocytic tissue of thymus" EXACT [OBOL:automatic]
synonym: "lymphocytic tissue of thymus gland" EXACT [OBOL:automatic]
synonym: "lymphoid tissue of thymus" EXACT [OBOL:automatic]
synonym: "lymphoid tissue of thymus gland" EXACT [OBOL:automatic]
synonym: "thymus gland lymphatic tissue" EXACT [OBOL:automatic]
synonym: "thymus gland lymphocytic tissue" EXACT [OBOL:automatic]
synonym: "thymus gland lymphoid tissue" EXACT [OBOL:automatic]
synonym: "thymus lymphatic tissue" EXACT [OBOL:automatic]
synonym: "thymus lymphocytic tissue" EXACT [OBOL:automatic]
xref: MA:0002673
is_a: UBERON:0001744 ! implied link automatically realized ! lymphoid tissue
relationship: part_of UBERON:0002370
intersection_of: UBERON:0001744 ! lymphoid tissue
intersection_of: part_of UBERON:0002370 ! thymus
[Term]
id: UBERON:0003484
name: eye sebaceous gland
def: "A sebaceous gland that is part of a camera-type eye [Obol]." [OBOL:automatic]
synonym: "camera-type eye sebaceous gland" EXACT [OBOL:automatic]
synonym: "sebaceous gland of camera-type eye" EXACT [OBOL:automatic]
synonym: "sebaceous gland of vertebrate eye" EXACT [OBOL:automatic]
synonym: "vertebrate eye sebaceous gland" EXACT [OBOL:automatic]
xref: MA:0002452
is_a: UBERON:0001821 ! implied link automatically realized ! sebaceous gland
is_a: UBERON:0004859 ! implied link automatically realized ! eye gland
relationship: part_of UBERON:0000019
intersection_of: UBERON:0001821 ! sebaceous gland
intersection_of: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0003485
name: vagina sebaceous gland
def: "A sebaceous gland that is part of a vagina [Obol]." [OBOL:automatic]
synonym: "sebaceous gland of vagina" EXACT [OBOL:automatic]
xref: MA:0001732
is_a: UBERON:0001821 ! implied link automatically realized ! sebaceous gland
is_a: UBERON:0005398 ! implied link automatically realized ! female reproductive gland
relationship: part_of UBERON:0000996
intersection_of: UBERON:0001821 ! sebaceous gland
intersection_of: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0003486
name: mammary gland sebaceous gland
def: "A sebaceous gland that is part of a lactiferous gland [Obol]." [OBOL:automatic]
synonym: "lactiferous gland sebaceous gland" EXACT [OBOL:automatic]
synonym: "lobe of breast sebaceous gland" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland sebaceous gland" EXACT [OBOL:automatic]
synonym: "sebaceous gland of lactiferous gland" EXACT [OBOL:automatic]
synonym: "sebaceous gland of lobe of breast" EXACT [OBOL:automatic]
synonym: "sebaceous gland of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "sebaceous gland of mammary gland" EXACT [OBOL:automatic]
xref: MA:0000794
is_a: UBERON:0001821 ! implied link automatically realized ! sebaceous gland
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001911
intersection_of: UBERON:0001821 ! sebaceous gland
intersection_of: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0003487
name: skin sebaceous gland
def: "the holocrine glands of the dermis that secrete sebum into the hair follicles." [MP:0009535]
synonym: "sebaceous gland of skin" EXACT [OBOL:automatic]
xref: MA:0000149
is_a: UBERON:0001821 ! implied link automatically realized ! sebaceous gland
is_a: UBERON:0002419 ! implied link automatically realized ! skin gland
relationship: part_of UBERON:0002097
intersection_of: UBERON:0001821 ! sebaceous gland
intersection_of: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0003488
name: abdominal mammary gland
def: "A lactiferous gland that is part of an abdomen [Obol]." [OBOL:automatic]
synonym: "abdomen lactiferous gland" EXACT [OBOL:automatic]
synonym: "abdomen lobe of breast" EXACT [OBOL:automatic]
synonym: "abdomen lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "abdomen mammary gland" EXACT [OBOL:automatic]
synonym: "lactiferous gland of abdomen" EXACT [OBOL:automatic]
synonym: "lobe of breast of abdomen" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland of abdomen" EXACT [OBOL:automatic]
synonym: "mammary gland of abdomen" EXACT [OBOL:automatic]
xref: MA:0000787
is_a: UBERON:0001911 ! implied link automatically realized ! mammary gland
is_a: UBERON:0005172 ! implied link automatically realized ! abdomen organ
relationship: part_of UBERON:0000916
intersection_of: UBERON:0001911 ! mammary gland
intersection_of: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003489
name: respiratory system capillary endothelium
def: "An endothelium of capillary that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius blood capillary endothelium" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius capillary endothelium" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius capillary vessel endothelium" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius endothelium of blood capillary" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius endothelium of capillary" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius endothelium of capillary vessel" EXACT [OBOL:automatic]
synonym: "blood capillary endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "blood capillary endothelium of respiratory system" EXACT [OBOL:automatic]
synonym: "capillary endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "capillary endothelium of respiratory system" EXACT [OBOL:automatic]
synonym: "capillary vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "capillary vessel endothelium of respiratory system" EXACT [OBOL:automatic]
synonym: "endothelium of blood capillary of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "endothelium of blood capillary of respiratory system" EXACT [OBOL:automatic]
synonym: "endothelium of capillary of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "endothelium of capillary of respiratory system" EXACT [OBOL:automatic]
synonym: "endothelium of capillary vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "endothelium of capillary vessel of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system blood capillary endothelium" EXACT [OBOL:automatic]
synonym: "respiratory system capillary vessel endothelium" EXACT [OBOL:automatic]
synonym: "respiratory system endothelium of blood capillary" EXACT [OBOL:automatic]
synonym: "respiratory system endothelium of capillary" EXACT [OBOL:automatic]
synonym: "respiratory system endothelium of capillary vessel" EXACT [OBOL:automatic]
xref: MA:0001808
is_a: UBERON:0001915 ! implied link automatically realized ! endothelium of capillary
is_a: UBERON:0004702 ! implied link automatically realized ! respiratory system blood vessel endothelium
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001915 ! endothelium of capillary
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003490
name: respiratory system reticular lamina
def: "A reticular lamina that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius fibroreticular lamina" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius lamina fibroreticularis" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius reticular lamina" EXACT [OBOL:automatic]
synonym: "fibroreticular lamina of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "fibroreticular lamina of respiratory system" EXACT [OBOL:automatic]
synonym: "lamina fibroreticularis of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "lamina fibroreticularis of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system fibroreticular lamina" EXACT [OBOL:automatic]
synonym: "respiratory system lamina fibroreticularis" EXACT [OBOL:automatic]
synonym: "reticular lamina of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "reticular lamina of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001817
is_a: UBERON:0001967 ! implied link automatically realized ! reticular lamina
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001967 ! reticular lamina
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003492
name: bronchus reticular lamina
def: "A reticular lamina that is part of a bronchus [Obol]." [OBOL:automatic]
synonym: "bronchi fibroreticular lamina" EXACT [OBOL:automatic]
synonym: "bronchi lamina fibroreticularis" EXACT [OBOL:automatic]
synonym: "bronchi reticular lamina" EXACT [OBOL:automatic]
synonym: "bronchial trunk fibroreticular lamina" EXACT [OBOL:automatic]
synonym: "bronchial trunk lamina fibroreticularis" EXACT [OBOL:automatic]
synonym: "bronchial trunk reticular lamina" EXACT [OBOL:automatic]
synonym: "bronchus fibroreticular lamina" EXACT [OBOL:automatic]
synonym: "bronchus lamina fibroreticularis" EXACT [OBOL:automatic]
synonym: "fibroreticular lamina of bronchi" EXACT [OBOL:automatic]
synonym: "fibroreticular lamina of bronchial trunk" EXACT [OBOL:automatic]
synonym: "fibroreticular lamina of bronchus" EXACT [OBOL:automatic]
synonym: "lamina fibroreticularis of bronchi" EXACT [OBOL:automatic]
synonym: "lamina fibroreticularis of bronchial trunk" EXACT [OBOL:automatic]
synonym: "lamina fibroreticularis of bronchus" EXACT [OBOL:automatic]
synonym: "reticular lamina of bronchi" EXACT [OBOL:automatic]
synonym: "reticular lamina of bronchial trunk" EXACT [OBOL:automatic]
synonym: "reticular lamina of bronchus" EXACT [OBOL:automatic]
xref: MA:0001834
is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003490 ! implied link automatically realized ! respiratory system reticular lamina
relationship: part_of UBERON:0002185
intersection_of: UBERON:0001967 ! reticular lamina
intersection_of: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0003493
name: trachea reticular lamina
def: "A reticular lamina that is part of a trachea [Obol]." [OBOL:automatic]
synonym: "fibroreticular lamina of cartilaginous trachea" EXACT [OBOL:automatic]
synonym: "fibroreticular lamina of windpipe" EXACT [OBOL:automatic]
synonym: "lamina fibroreticularis of cartilaginous trachea" EXACT [OBOL:automatic]
synonym: "lamina fibroreticularis of windpipe" EXACT [OBOL:automatic]
synonym: "reticular lamina of cartilaginous trachea" EXACT [OBOL:automatic]
synonym: "reticular lamina of windpipe" EXACT [OBOL:automatic]
synonym: "windpipe fibroreticular lamina" EXACT [OBOL:automatic]
synonym: "windpipe lamina fibroreticularis" EXACT [OBOL:automatic]
synonym: "windpipe reticular lamina" EXACT [OBOL:automatic]
xref: MA:0001856
is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0003490 ! implied link automatically realized ! respiratory system reticular lamina
relationship: part_of UBERON:0003126
intersection_of: UBERON:0001967 ! reticular lamina
intersection_of: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0003494
name: respiratory system venule
def: "A venule that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius venule" EXACT [OBOL:automatic]
synonym: "venule of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "venule of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001813
is_a: UBERON:0001979 ! implied link automatically realized ! venule
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001979 ! venule
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003495
name: respiratory system arteriole
def: "An arteriole that is part of a respiratory system [Obol]." [OBOL:automatic]
xref: MA:0001803
is_a: UBERON:0001980 ! implied link automatically realized ! arteriole
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001980 ! arteriole
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003496
name: head blood vessel
def: "A blood vessel that is part of a head [Obol]." [OBOL:automatic]
synonym: "adult head blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of adult head" EXACT [OBOL:automatic]
synonym: "blood vessel of head" EXACT [OBOL:automatic]
xref: MA:0000575
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
relationship: part_of UBERON:0000033
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003497
name: abdomen blood vessel
def: "A blood vessel that is part of an abdomen [Obol]." [OBOL:automatic]
synonym: "blood vessel of abdomen" EXACT [OBOL:automatic]
xref: MA:0000518
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
relationship: part_of UBERON:0000916
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003498
name: heart blood vessel
def: "A blood vessel that is part of a heart [Obol]." [OBOL:automatic]
synonym: "blood vessel of heart" EXACT [OBOL:automatic]
xref: MA:0002483
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
is_a: UBERON:0005985 ! implied link automatically realized ! coronary vessel
relationship: part_of UBERON:0000948
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0003499
name: brain blood vessel
def: "A blood vessel that is part of a brain [Obol]." [OBOL:automatic]
synonym: "blood vessel of brain" EXACT [OBOL:automatic]
xref: MA:0002769
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
relationship: part_of UBERON:0000955
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003500
name: corneal blood vessel
def: "A blood vessel that is part of a cornea [Obol]." [OBOL:automatic]
synonym: "blood vessel of cornea" EXACT [OBOL:automatic]
synonym: "cornea blood vessel" EXACT [OBOL:automatic]
xref: MA:0001241
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000964
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000964 ! cornea
[Term]
id: UBERON:0003501
name: retina blood vessel
def: "A blood vessel that is part of a retina [Obol]." [OBOL:automatic]
synonym: "blood vessel of inner layer of eyeball" EXACT [OBOL:automatic]
synonym: "blood vessel of retina" EXACT [OBOL:automatic]
synonym: "blood vessel of tunica interna of eyeball" EXACT [OBOL:automatic]
synonym: "inner layer of eyeball blood vessel" EXACT [OBOL:automatic]
synonym: "retinal blood vessel" EXACT [OBOL:automatic]
synonym: "tunica interna of eyeball blood vessel" EXACT [OBOL:automatic]
xref: GAID:509
xref: MA:0001317
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000966
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000966 ! retina
relationship: part_of UBERON:0004864 ! vasculature of retina
[Term]
id: UBERON:0003502
name: neck blood vessel
def: "A blood vessel that is part of a neck [Obol]." [OBOL:automatic]
synonym: "blood vessel of neck" EXACT [OBOL:automatic]
synonym: "blood vessel of neck (volume)" EXACT [OBOL:automatic]
synonym: "neck (volume) blood vessel" EXACT [OBOL:automatic]
xref: MA:0000583
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
relationship: part_of UBERON:0000974
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0003503
name: leg blood vessel
def: "A blood vessel that is part of a leg [Obol]." [OBOL:automatic]
synonym: "blood vessel of leg" EXACT [OBOL:automatic]
xref: MA:0000669
is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel
relationship: part_of UBERON:0000978
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003504
name: respiratory system blood vessel
def: "A blood vessel that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "blood vessel of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001799
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003505
name: trachea blood vessel
alt_id: UBERON:0003525
synonym: "blood vessel of trachea" EXACT [OBOL:automatic]
xref: MA:0001852
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel
relationship: part_of UBERON:0003126
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0003506
name: chest blood vessel
def: "A blood vessel that is part of a chest [Obol]." [OBOL:automatic]
synonym: "anterior thoracic region blood vessel" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "blood vessel of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "blood vessel of chest" EXACT [OBOL:automatic]
synonym: "blood vessel of front of thorax" EXACT [OBOL:automatic]
synonym: "front of thorax blood vessel" EXACT [OBOL:automatic]
xref: MA:0000549
is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel
relationship: part_of UBERON:0001443
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0003507
name: arm blood vessel
def: "A blood vessel that is part of an arm [Obol]." [OBOL:automatic]
synonym: "blood vessel of arm" EXACT [OBOL:automatic]
synonym: "blood vessel of brachial region" EXACT [OBOL:automatic]
synonym: "blood vessel of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "brachial region blood vessel" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb blood vessel" EXACT [OBOL:automatic]
xref: MA:0000591
is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel
relationship: part_of UBERON:0001460
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003508
name: foot digit blood vessel
def: "A blood vessel that is part of a toe [Obol]." [OBOL:automatic]
synonym: "blood vessel of digit of foot" EXACT [OBOL:automatic]
synonym: "blood vessel of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "blood vessel of digitus pedis" EXACT [OBOL:automatic]
synonym: "blood vessel of foot digit" EXACT [OBOL:automatic]
synonym: "blood vessel of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "blood vessel of toe" EXACT [OBOL:automatic]
synonym: "digit of foot blood vessel" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb blood vessel" EXACT [OBOL:automatic]
synonym: "digitus pedis blood vessel" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit blood vessel" EXACT [OBOL:automatic]
synonym: "toe blood vessel" EXACT [OBOL:automatic]
xref: MA:0000645
is_a: UBERON:0003521 ! implied link automatically realized ! foot blood vessel
relationship: part_of UBERON:0001466
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0003509
name: arterial blood vessel
def: "A blood vessel that carries blood from the heart to the body[tfd]." [http://www.thefreedictionary.com/arterial+blood+vessel]
comment: only in MA - supertype of artery, arteriole, aorta.
xref: MA:0000061
is_a: UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0004572 ! arterial system
[Term]
id: UBERON:0003510
name: eyelid blood vessel
def: "A blood vessel that is part of a eyelid [Obol]." [OBOL:automatic]
synonym: "blepharon blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of blepharon" EXACT [OBOL:automatic]
synonym: "blood vessel of eyelid" EXACT [OBOL:automatic]
xref: MA:0001250
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
relationship: part_of UBERON:0001711
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0003511
name: iris blood vessel
def: "A blood vessel that is part of a iris [Obol]." [OBOL:automatic]
synonym: "blood vessel of iris" EXACT [OBOL:automatic]
xref: MA:0001290
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001769
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001769 ! iris
relationship: part_of UBERON:0004118 ! vasculature of iris
[Term]
id: UBERON:0003512
name: lung blood vessel
def: "A blood vessel that is part of a lung [Obol]." [OBOL:automatic]
synonym: "blood vessel of lung" EXACT [OBOL:automatic]
xref: MA:0002457
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel
relationship: part_of UBERON:0002048
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0003513
name: trunk blood vessel
def: "A blood vessel that is part of a trunk [Obol]." [OBOL:automatic]
synonym: "blood vessel of torso" EXACT [OBOL:automatic]
synonym: "blood vessel of trunk" EXACT [OBOL:automatic]
synonym: "torso blood vessel" EXACT [OBOL:automatic]
xref: MA:0000511
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
relationship: part_of UBERON:0002100
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0003514
name: limb blood vessel
def: "A blood vessel that is part of a limb [Obol]." [OBOL:automatic]
synonym: "blood vessel of limb" EXACT [OBOL:automatic]
xref: MA:0000687
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
relationship: part_of UBERON:0002101
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003515
name: forelimb blood vessel
def: "A blood vessel that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of anteriormost limb" EXACT [OBOL:automatic]
synonym: "blood vessel of fore limb" EXACT [OBOL:automatic]
synonym: "blood vessel of forelimb" EXACT [OBOL:automatic]
synonym: "blood vessel of superior member" EXACT [OBOL:automatic]
synonym: "blood vessel of upper extremity" EXACT [OBOL:automatic]
synonym: "fore limb blood vessel" EXACT [OBOL:automatic]
synonym: "superior member blood vessel" EXACT [OBOL:automatic]
synonym: "upper extremity blood vessel" EXACT [OBOL:automatic]
xref: MA:0000611
is_a: UBERON:0003514 ! implied link automatically realized ! limb blood vessel
relationship: part_of UBERON:0002102
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003516
name: hindlimb blood vessel
def: "A blood vessel that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "blood vessel of hind limb" EXACT [OBOL:automatic]
synonym: "blood vessel of hindlimb" EXACT [OBOL:automatic]
synonym: "blood vessel of inferior member" EXACT [OBOL:automatic]
synonym: "blood vessel of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb blood vessel" EXACT [OBOL:automatic]
synonym: "inferior member blood vessel" EXACT [OBOL:automatic]
synonym: "lower extremity blood vessel" EXACT [OBOL:automatic]
xref: MA:0000659
is_a: UBERON:0003514 ! implied link automatically realized ! limb blood vessel
relationship: part_of UBERON:0002103
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003517
name: kidney blood vessel
def: "A blood vessel that is part of a kidney [Obol]." [OBOL:automatic]
synonym: "blood vessel of kidney" EXACT [OBOL:automatic]
synonym: "renal blood vessel" EXACT [OBOL:automatic]
xref: MA:0001682
xref: ZFA:0005306
is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel
relationship: part_of UBERON:0002113
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0003518
name: main bronchus blood vessel
def: "A blood vessel that is part of a main bronchus [Obol]." [OBOL:automatic]
synonym: "blood vessel of bronchus principalis" EXACT [OBOL:automatic]
synonym: "blood vessel of main bronchus" EXACT [OBOL:automatic]
synonym: "blood vessel of primary bronchus" EXACT [OBOL:automatic]
synonym: "blood vessel of principal bronchus" EXACT [OBOL:automatic]
synonym: "bronchus principalis blood vessel" EXACT [OBOL:automatic]
synonym: "primary bronchus blood vessel" EXACT [OBOL:automatic]
synonym: "principal bronchus blood vessel" EXACT [OBOL:automatic]
xref: MA:0001844
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel
relationship: part_of UBERON:0002182
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0003519
name: thoracic cavity blood vessel
def: "A blood vessel that is part of a thoracic cavity [Obol]." [OBOL:automatic]
synonym: "blood vessel of cavity of chest" EXACT [OBOL:automatic]
synonym: "blood vessel of cavity of thorax" EXACT [OBOL:automatic]
synonym: "blood vessel of chest cavity" EXACT [OBOL:automatic]
synonym: "blood vessel of pectoral cavity" EXACT [OBOL:automatic]
synonym: "blood vessel of thoracic cavity" EXACT [OBOL:automatic]
synonym: "cavity of chest blood vessel" EXACT [OBOL:automatic]
synonym: "cavity of thorax blood vessel" EXACT [OBOL:automatic]
synonym: "chest cavity blood vessel" EXACT [OBOL:automatic]
synonym: "pectoral cavity blood vessel" EXACT [OBOL:automatic]
xref: MA:0000554
is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel
relationship: part_of UBERON:0002224
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003520
name: pelvis blood vessel
def: "A blood vessel that is part of a pelvis [Obol]." [OBOL:automatic]
synonym: "blood vessel of pelvis" EXACT [OBOL:automatic]
xref: MA:0000531
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
relationship: part_of UBERON:0002355
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0003521
name: foot blood vessel
def: "A blood vessel that is part of a foot [Obol]." [OBOL:automatic]
synonym: "autopod of hind limb blood vessel" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb blood vessel" EXACT [OBOL:automatic]
synonym: "autopod of inferior member blood vessel" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "blood vessel of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "blood vessel of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "blood vessel of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "blood vessel of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "blood vessel of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "blood vessel of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "blood vessel of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "blood vessel of foot" EXACT [OBOL:automatic]
synonym: "blood vessel of hind limb autopod" EXACT [OBOL:automatic]
synonym: "blood vessel of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "blood vessel of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of inferior member autopod" EXACT [OBOL:automatic]
synonym: "blood vessel of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "blood vessel of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb blood vessel" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb blood vessel" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member blood vessel" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity blood vessel" EXACT [OBOL:automatic]
synonym: "hind limb autopod blood vessel" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "hindlimb autopod blood vessel" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "inferior member autopod blood vessel" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "lower extremity autopod blood vessel" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb blood vessel" EXACT [OBOL:automatic]
xref: MA:0000642
is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel
relationship: part_of UBERON:0002387
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0003522
name: hand digit blood vessel
def: "A blood vessel that is part of a finger [Obol]." [OBOL:automatic]
synonym: "blood vessel of digit of hand" EXACT [OBOL:automatic]
synonym: "blood vessel of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "blood vessel of digitus manus" EXACT [OBOL:automatic]
synonym: "blood vessel of finger" EXACT [OBOL:automatic]
synonym: "blood vessel of hand digit" EXACT [OBOL:automatic]
synonym: "blood vessel of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "digit of hand blood vessel" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb blood vessel" EXACT [OBOL:automatic]
synonym: "digitus manus blood vessel" EXACT [OBOL:automatic]
synonym: "finger blood vessel" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit blood vessel" EXACT [OBOL:automatic]
xref: MA:0000621
is_a: UBERON:0003523 ! implied link automatically realized ! hand blood vessel
relationship: part_of UBERON:0002389
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0003523
name: hand blood vessel
def: "A blood vessel that is part of a hand [Obol]." [OBOL:automatic]
synonym: "arm autopod blood vessel" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "autopod of arm blood vessel" EXACT [OBOL:automatic]
synonym: "autopod of brachial region blood vessel" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of arm autopod" EXACT [OBOL:automatic]
synonym: "blood vessel of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of autopod of arm" EXACT [OBOL:automatic]
synonym: "blood vessel of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "blood vessel of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "blood vessel of brachial region autopod" EXACT [OBOL:automatic]
synonym: "blood vessel of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "blood vessel of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "blood vessel of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "blood vessel of hand" EXACT [OBOL:automatic]
synonym: "blood vessel of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "blood vessel of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "brachial region autopod blood vessel" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm blood vessel" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region blood vessel" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb blood vessel" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod blood vessel" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb blood vessel" EXACT [OBOL:automatic]
xref: MA:0000618
is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel
relationship: part_of UBERON:0002398
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0003524
name: tail blood vessel
def: "A blood vessel that is part of a tail [Obol]." [OBOL:automatic]
synonym: "blood vessel of post-vent region" EXACT [OBOL:automatic]
synonym: "blood vessel of tail" EXACT [OBOL:automatic]
synonym: "post-vent region blood vessel" EXACT [OBOL:automatic]
xref: MA:0000695
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
relationship: part_of UBERON:0002415
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002415 ! tail
[Term]
id: UBERON:0003526
name: respiratory system capillary
def: "A capillary that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius blood capillary" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius capillary" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius capillary vessel" EXACT [OBOL:automatic]
synonym: "blood capillary of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "blood capillary of respiratory system" EXACT [OBOL:automatic]
synonym: "capillary of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "capillary of respiratory system" EXACT [OBOL:automatic]
synonym: "capillary vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "capillary vessel of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system blood capillary" EXACT [OBOL:automatic]
synonym: "respiratory system capillary vessel" EXACT [OBOL:automatic]
xref: MA:0001807
is_a: UBERON:0001982 ! implied link automatically realized ! capillary
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001982 ! capillary
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003527
name: kidney capillary
def: "A capillary that is part of a kidney [Obol]." [OBOL:automatic]
synonym: "blood capillary of kidney" EXACT [OBOL:automatic]
synonym: "capillary of kidney" EXACT [OBOL:automatic]
synonym: "capillary vessel of kidney" EXACT [OBOL:automatic]
synonym: "kidney blood capillary" EXACT [OBOL:automatic]
synonym: "kidney capillary vessel" EXACT [OBOL:automatic]
synonym: "renal capillary" EXACT [OBOL:automatic]
xref: MA:0002586
is_a: UBERON:0001982 ! implied link automatically realized ! capillary
is_a: UBERON:0003517 ! implied link automatically realized ! kidney blood vessel
relationship: part_of UBERON:0002113
intersection_of: UBERON:0001982 ! capillary
intersection_of: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0003528
name: brain grey matter
def: "A gray matter of neuraxis that is part of a brain [Obol]." [OBOL:automatic]
synonym: "brain gray matter" EXACT [OBOL:automatic]
synonym: "brain gray matter of neuraxis" EXACT [OBOL:automatic]
synonym: "brain grey substance" EXACT [OBOL:automatic]
synonym: "gray matter of brain" EXACT [OBOL:automatic]
synonym: "gray matter of neuraxis of brain" EXACT [OBOL:automatic]
synonym: "grey matter of brain" EXACT [OBOL:automatic]
synonym: "grey substance of brain" EXACT [OBOL:automatic]
xref: MA:0000810
xref: ncithesaurus:Cerebral_Gray_Matter
is_a: UBERON:0002020 ! implied link automatically realized ! gray matter of neuraxis
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0000955
intersection_of: UBERON:0002020 ! gray matter of neuraxis
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003529
name: respiratory system lymphatic vessel endothelium
def: "An endothelium of lymphatic vessel that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius endothelium of lymph vessel" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius endothelium of lymphatic vessel" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius lymph vessel endothelium" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius lymphatic vessel endothelium" EXACT [OBOL:automatic]
synonym: "endothelium of lymph vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "endothelium of lymph vessel of respiratory system" EXACT [OBOL:automatic]
synonym: "endothelium of lymphatic vessel of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "endothelium of lymphatic vessel of respiratory system" EXACT [OBOL:automatic]
synonym: "lymph vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "lymph vessel endothelium of respiratory system" EXACT [OBOL:automatic]
synonym: "lymphatic vessel endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "lymphatic vessel endothelium of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system endothelium of lymph vessel" EXACT [OBOL:automatic]
synonym: "respiratory system endothelium of lymphatic vessel" EXACT [OBOL:automatic]
synonym: "respiratory system lymph vessel endothelium" EXACT [OBOL:automatic]
xref: MA:0001825
is_a: UBERON:0002042 ! implied link automatically realized ! endothelium of lymphatic vessel
is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium
relationship: part_of UBERON:0001004
intersection_of: UBERON:0002042 ! endothelium of lymphatic vessel
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003530
name: foot digit skin
def: "A zone of skin that is part of a toe [Obol]." [OBOL:automatic]
synonym: "digit of foot skin" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb skin" EXACT [OBOL:automatic]
synonym: "digitus pedis skin" EXACT [OBOL:automatic]
synonym: "skin of digit of foot" EXACT [OBOL:automatic]
synonym: "skin of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "skin of digitus pedis" EXACT [OBOL:automatic]
synonym: "skin of foot digit" EXACT [OBOL:automatic]
synonym: "skin of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "skin of toe" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit skin" EXACT [OBOL:automatic]
synonym: "toe skin" EXACT [OBOL:automatic]
xref: FMA:37852
xref: MA:0000650
xref: ncithesaurus:Foot_Digit_Skin
is_a: UBERON:0001513 ! implied link automatically realized ! skin of foot
relationship: part_of UBERON:0001466
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0003531
name: forelimb skin
def: "A zone of skin that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb skin" EXACT [OBOL:automatic]
synonym: "fore limb skin" EXACT [OBOL:automatic]
synonym: "skin of anteriormost limb" EXACT [OBOL:automatic]
synonym: "skin of fore limb" EXACT [OBOL:automatic]
synonym: "skin of forelimb" EXACT [OBOL:automatic]
synonym: "skin of superior member" EXACT [OBOL:automatic]
synonym: "skin of upper extremity" EXACT [OBOL:automatic]
synonym: "superior member skin" EXACT [OBOL:automatic]
synonym: "upper extremity skin" EXACT [OBOL:automatic]
xref: FMA:23101
xref: MA:0000617
is_a: UBERON:0001419 ! implied link automatically realized ! skin of limb
relationship: part_of UBERON:0002102
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003532
name: hindlimb skin
def: "A zone of skin that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "hind limb skin" EXACT [OBOL:automatic]
synonym: "inferior member skin" EXACT [OBOL:automatic]
synonym: "lower extremity skin" EXACT [OBOL:automatic]
synonym: "skin of hind limb" EXACT [OBOL:automatic]
synonym: "skin of hindlimb" EXACT [OBOL:automatic]
synonym: "skin of inferior member" EXACT [OBOL:automatic]
synonym: "skin of lower extremity" EXACT [OBOL:automatic]
xref: FMA:23102
xref: MA:0000665
is_a: UBERON:0001419 ! implied link automatically realized ! skin of limb
relationship: part_of UBERON:0002103
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003533
name: hand digit skin
def: "A zone of skin that is part of a finger [Obol]." [OBOL:automatic]
synonym: "digit of hand skin" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb skin" EXACT [OBOL:automatic]
synonym: "digitus manus skin" EXACT [OBOL:automatic]
synonym: "finger skin" EXACT [OBOL:automatic]
synonym: "skin of digit of hand" EXACT [OBOL:automatic]
synonym: "skin of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "skin of digitus manus" EXACT [OBOL:automatic]
synonym: "skin of finger" EXACT [OBOL:automatic]
synonym: "skin of hand digit" EXACT [OBOL:automatic]
synonym: "skin of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit skin" EXACT [OBOL:automatic]
xref: FMA:38304
xref: MA:0000626
xref: ncithesaurus:Hand_Digit_Skin
is_a: UBERON:0001519 ! implied link automatically realized ! skin of hand
relationship: part_of UBERON:0002389
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0003534
name: tail skin
def: "A zone of skin that is part of a tail [Obol]." [OBOL:automatic]
synonym: "post-vent region skin" EXACT [OBOL:automatic]
synonym: "skin of post-vent region" EXACT [OBOL:automatic]
synonym: "skin of tail" EXACT [OBOL:automatic]
xref: MA:0000700
is_a: UBERON:0000014 ! implied link automatically realized ! zone of skin
relationship: part_of UBERON:0002415
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002415 ! tail
[Term]
id: UBERON:0003535
name: vagus X nerve trunk
def: "A trunk that is part of a vagus nerve [Obol]." [OBOL:automatic]
synonym: "tenth cranial nerve torso" EXACT [OBOL:automatic]
synonym: "tenth cranial nerve trunk" EXACT [OBOL:automatic]
synonym: "torso of tenth cranial nerve" EXACT [OBOL:automatic]
synonym: "torso of vagus" EXACT [OBOL:automatic]
synonym: "torso of vagus nerve" EXACT [OBOL:automatic]
synonym: "torso of Vagus nerve [ X ]" EXACT [OBOL:automatic]
synonym: "torso of vagus nerve tree" EXACT [OBOL:automatic]
synonym: "torso of vagus x nerve" EXACT [OBOL:automatic]
synonym: "trunk of tenth cranial nerve" EXACT [OBOL:automatic]
synonym: "trunk of vagus" EXACT [OBOL:automatic]
synonym: "trunk of vagus nerve" EXACT [OBOL:automatic]
synonym: "trunk of Vagus nerve [ X ]" EXACT [OBOL:automatic]
synonym: "trunk of vagus nerve tree" EXACT [OBOL:automatic]
synonym: "trunk of vagus x nerve" EXACT [OBOL:automatic]
synonym: "Vagus nerve [ X ] torso" EXACT [OBOL:automatic]
synonym: "Vagus nerve [ X ] trunk" EXACT [OBOL:automatic]
synonym: "vagus nerve torso" EXACT [OBOL:automatic]
synonym: "vagus nerve tree torso" EXACT [OBOL:automatic]
synonym: "vagus nerve tree trunk" EXACT [OBOL:automatic]
synonym: "vagus nerve trunk" EXACT [OBOL:automatic]
synonym: "vagus torso" EXACT [OBOL:automatic]
synonym: "vagus trunk" EXACT [OBOL:automatic]
synonym: "vagus x nerve torso" EXACT [OBOL:automatic]
synonym: "vagus x nerve trunk" EXACT [OBOL:automatic]
xref: FMA:6221
xref: MA:0001150
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0002100 ! implied link automatically realized ! trunk
relationship: part_of UBERON:0001759
intersection_of: UBERON:0002100 ! trunk
intersection_of: part_of UBERON:0001759 ! vagus nerve
[Term]
id: UBERON:0003536
name: right lung alveolar duct
def: "An alveolar duct that is part of a right lung [Obol]." [OBOL:automatic]
synonym: "alveolar duct of right lung" EXACT [OBOL:automatic]
xref: MA:0001785
xref: ncithesaurus:Right_Lung_Alveolar_Duct
is_a: UBERON:0002173 ! implied link automatically realized ! alveolar duct
relationship: part_of UBERON:0002167
intersection_of: UBERON:0002173 ! alveolar duct
intersection_of: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003537
name: left lung alveolar duct
def: "An alveolar duct that is part of a left lung [Obol]." [OBOL:automatic]
synonym: "alveolar duct of left lung" EXACT [OBOL:automatic]
xref: MA:0001776
xref: ncithesaurus:Left_Lung_Alveolar_Duct
is_a: UBERON:0002173 ! implied link automatically realized ! alveolar duct
relationship: part_of UBERON:0002168
intersection_of: UBERON:0002173 ! alveolar duct
intersection_of: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003538
name: right lung bronchiole
def: "A bronchiole that is part of a right lung [Obol]." [OBOL:automatic]
synonym: "bronchiole of right lung" EXACT [OBOL:automatic]
synonym: "lobular bronchiole of right lung" EXACT [OBOL:automatic]
synonym: "right lung lobular bronchiole" EXACT [OBOL:automatic]
xref: MA:0001787
xref: ncithesaurus:Right_Lung_Bronchiole
is_a: UBERON:0002186 ! implied link automatically realized ! bronchiole
relationship: part_of UBERON:0002167
intersection_of: UBERON:0002186 ! bronchiole
intersection_of: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003539
name: left lung bronchiole
def: "A bronchiole that is part of a left lung [Obol]." [OBOL:automatic]
synonym: "bronchiole of left lung" EXACT [OBOL:automatic]
synonym: "left lung lobular bronchiole" EXACT [OBOL:automatic]
synonym: "lobular bronchiole of left lung" EXACT [OBOL:automatic]
xref: MA:0001778
xref: ncithesaurus:Left_Lung_Bronchiole
is_a: UBERON:0002186 ! implied link automatically realized ! bronchiole
relationship: part_of UBERON:0002168
intersection_of: UBERON:0002186 ! bronchiole
intersection_of: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003540
name: right lung terminal bronchiole
def: "A terminal bronchiole that is part of a right lung [Obol]." [OBOL:automatic]
synonym: "bronchiolus terminalis of right lung" EXACT [OBOL:automatic]
synonym: "right lung bronchiolus terminalis" EXACT [OBOL:automatic]
synonym: "terminal bronchiole of right lung" EXACT [OBOL:automatic]
xref: MA:0001789
xref: ncithesaurus:Right_Lung_Terminal_Bronchiole
is_a: UBERON:0002187 ! implied link automatically realized ! terminal bronchiole
is_a: UBERON:0003538 ! implied link automatically realized ! right lung bronchiole
relationship: part_of UBERON:0002167
intersection_of: UBERON:0002187 ! terminal bronchiole
intersection_of: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003541
name: left lung terminal bronchiole
def: "A terminal bronchiole that is part of a left lung [Obol]." [OBOL:automatic]
synonym: "bronchiolus terminalis of left lung" EXACT [OBOL:automatic]
synonym: "left lung bronchiolus terminalis" EXACT [OBOL:automatic]
synonym: "terminal bronchiole of left lung" EXACT [OBOL:automatic]
xref: MA:0001780
xref: ncithesaurus:Left_Lung_Terminal_Bronchiole
is_a: UBERON:0002187 ! implied link automatically realized ! terminal bronchiole
is_a: UBERON:0003539 ! implied link automatically realized ! left lung bronchiole
relationship: part_of UBERON:0002168
intersection_of: UBERON:0002187 ! terminal bronchiole
intersection_of: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003542
name: right lung respiratory bronchiole
def: "A respiratory bronchiole that is part of a right lung [Obol]." [OBOL:automatic]
synonym: "bronchiolus respiratorius of right lung" EXACT [OBOL:automatic]
synonym: "respiratory bronchiole of right lung" EXACT [OBOL:automatic]
synonym: "right lung bronchiolus respiratorius" EXACT [OBOL:automatic]
xref: MA:0001788
xref: ncithesaurus:Right_Lung_Respiratory_Bronchiole
is_a: UBERON:0002188 ! implied link automatically realized ! respiratory bronchiole
is_a: UBERON:0003538 ! implied link automatically realized ! right lung bronchiole
relationship: part_of UBERON:0002167
intersection_of: UBERON:0002188 ! respiratory bronchiole
intersection_of: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003543
name: left lung respiratory bronchiole
def: "A respiratory bronchiole that is part of a left lung [Obol]." [OBOL:automatic]
synonym: "bronchiolus respiratorius of left lung" EXACT [OBOL:automatic]
synonym: "left lung bronchiolus respiratorius" EXACT [OBOL:automatic]
synonym: "respiratory bronchiole of left lung" EXACT [OBOL:automatic]
xref: MA:0001779
xref: ncithesaurus:Left_Lung_Respiratory_Bronchiole
is_a: UBERON:0002188 ! implied link automatically realized ! respiratory bronchiole
is_a: UBERON:0003539 ! implied link automatically realized ! left lung bronchiole
relationship: part_of UBERON:0002168
intersection_of: UBERON:0002188 ! respiratory bronchiole
intersection_of: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003544
name: brain white matter
def: "the regions of the brain that are largely or entirely composed of myelinated nerve cell axons and contain few or no neural cell bodies or dendrites." [MP:0008026]
synonym: "brain white matter of neuraxis" EXACT [OBOL:automatic]
synonym: "brain white substance" EXACT [OBOL:automatic]
synonym: "white matter of brain" EXACT [OBOL:automatic]
synonym: "white matter of neuraxis of brain" EXACT [OBOL:automatic]
synonym: "white substance of brain" EXACT [OBOL:automatic]
xref: MA:0000820
xref: ncithesaurus:Brain_White_Matter
is_a: UBERON:0002316 ! implied link automatically realized ! white matter of neuraxis
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0000955
intersection_of: UBERON:0002316 ! white matter of neuraxis
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003545
name: brainstem white matter
def: "A white matter of neuraxis that is part of a brainstem [Obol]." [OBOL:automatic]
synonym: "brainstem white matter of neuraxis" EXACT [OBOL:automatic]
synonym: "brainstem white substance" EXACT [OBOL:automatic]
synonym: "white matter of brainstem" EXACT [OBOL:automatic]
synonym: "white matter of neuraxis of brainstem" EXACT [OBOL:automatic]
synonym: "white substance of brainstem" EXACT [OBOL:automatic]
xref: MA:0002741
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
relationship: part_of UBERON:0002298
intersection_of: UBERON:0002316 ! white matter of neuraxis
intersection_of: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0003546
name: distal convoluted tubule macula densa
def: "A macula densa that is part of a distal convoluted tubule [Obol]." [OBOL:automatic]
synonym: "distal convoluted renal tubule macula densa" EXACT [OBOL:automatic]
synonym: "macula densa of distal convoluted renal tubule" EXACT [OBOL:automatic]
synonym: "macula densa of distal convoluted tubule" EXACT [OBOL:automatic]
synonym: "macula densa of tubulus contortus distalis" EXACT [OBOL:automatic]
synonym: "tubulus contortus distalis macula densa" EXACT [OBOL:automatic]
xref: MA:0001668
is_a: UBERON:0002335 ! implied link automatically realized ! macula densa
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001292
intersection_of: UBERON:0002335 ! macula densa
intersection_of: part_of UBERON:0001292 ! distal convoluted tubule
[Term]
id: UBERON:0003547
name: brain meninx
def: "A meninx that is part of a brain [Obol]." [OBOL:automatic]
synonym: "brain meninges" EXACT [OBOL:automatic]
synonym: "meninges of brain" EXACT [OBOL:automatic]
synonym: "meninx of brain" EXACT [OBOL:automatic]
xref: HOG:0000013
xref: MA:0000813
is_a: UBERON:0002360 ! implied link automatically realized ! meninx
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0000955
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003548
name: forebrain meninges
def: "A meninx that is part of a forebrain [Obol]." [OBOL:automatic]
synonym: "forebrain meninx" EXACT [OBOL:automatic]
synonym: "meninges of forebrain" EXACT [OBOL:automatic]
synonym: "meninx of forebrain" EXACT [OBOL:automatic]
xref: MA:0000883
is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx
relationship: part_of UBERON:0001890
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0003549
name: brain pia mater
def: "the fibrous membrane forming the innermost of the three coverings that surrounds the brain within the cranial cavity that is firmly attached to the glial capsule." [MP:0009026]
synonym: "brain pia mater of neuraxis" EXACT [OBOL:automatic]
synonym: "pia mater of brain" EXACT [OBOL:automatic]
synonym: "pia mater of neuraxis of brain" EXACT [OBOL:automatic]
xref: HOG:0000470
xref: MA:0000816
xref: ncithesaurus:Brain_Pia_Mater
is_a: UBERON:0002361 ! implied link automatically realized ! pia mater
is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx
relationship: part_of UBERON:0000955
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003550
name: forebrain pia mater
def: "A pia mater that is part of a forebrain [Obol]." [OBOL:automatic]
synonym: "forebrain pia mater of neuraxis" EXACT [OBOL:automatic]
synonym: "pia mater of forebrain" EXACT [OBOL:automatic]
synonym: "pia mater of neuraxis of forebrain" EXACT [OBOL:automatic]
xref: MA:0000886
is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges
is_a: UBERON:0003549 ! implied link automatically realized ! brain pia mater
relationship: part_of UBERON:0001890
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0003551
name: midbrain pia mater
def: "A pia mater that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "midbrain pia mater of neuraxis" EXACT [OBOL:automatic]
synonym: "pia mater of midbrain" EXACT [OBOL:automatic]
synonym: "pia mater of neuraxis of midbrain" EXACT [OBOL:automatic]
xref: EHDAA2:0001110
xref: EHDAA2:0001175
xref: HOG:0000467
xref: MA:0001061
is_a: UBERON:0003288 ! implied link automatically realized ! meninx of midbrain
is_a: UBERON:0003549 ! implied link automatically realized ! brain pia mater
relationship: part_of UBERON:0001891
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0003552
name: telencephalon pia mater
def: "A pia mater that is part of a telencephalon [Obol]." [OBOL:automatic]
synonym: "pia mater of neuraxis of telencephalon" EXACT [OBOL:automatic]
synonym: "pia mater of telencephalon" EXACT [OBOL:automatic]
synonym: "telencephalon pia mater of neuraxis" EXACT [OBOL:automatic]
xref: EHDAA2:0001992
xref: HOG:0000476
xref: MA:0000982
is_a: UBERON:0003289 ! implied link automatically realized ! meninx of telencephalon
is_a: UBERON:0003550 ! implied link automatically realized ! forebrain pia mater
relationship: part_of UBERON:0001893
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0003553
name: diencephalon pia mater
def: "A pia mater that is part of a diencephalon [Obol]." [OBOL:automatic]
synonym: "between brain pia mater" EXACT [OBOL:automatic]
synonym: "between brain pia mater of neuraxis" EXACT [OBOL:automatic]
synonym: "diencephalon pia mater of neuraxis" EXACT [OBOL:automatic]
synonym: "interbrain pia mater" EXACT [OBOL:automatic]
synonym: "interbrain pia mater of neuraxis" EXACT [OBOL:automatic]
synonym: "mature diencephalon pia mater" EXACT [OBOL:automatic]
synonym: "mature diencephalon pia mater of neuraxis" EXACT [OBOL:automatic]
synonym: "pia mater of between brain" EXACT [OBOL:automatic]
synonym: "pia mater of diencephalon" EXACT [OBOL:automatic]
synonym: "pia mater of interbrain" EXACT [OBOL:automatic]
synonym: "pia mater of mature diencephalon" EXACT [OBOL:automatic]
synonym: "pia mater of neuraxis of between brain" EXACT [OBOL:automatic]
synonym: "pia mater of neuraxis of diencephalon" EXACT [OBOL:automatic]
synonym: "pia mater of neuraxis of interbrain" EXACT [OBOL:automatic]
synonym: "pia mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic]
xref: EHDAA2:0000400
xref: HOG:0000475
xref: MA:0000829
is_a: UBERON:0003290 ! implied link automatically realized ! meninx of diencephalon
is_a: UBERON:0003550 ! implied link automatically realized ! forebrain pia mater
relationship: part_of UBERON:0001894
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003554
name: hindbrain pia mater
def: "A pia mater that is part of a hindbrain [Obol]." [OBOL:automatic]
synonym: "hindbrain pia mater of neuraxis" EXACT [OBOL:automatic]
synonym: "pia mater of hindbrain" EXACT [OBOL:automatic]
synonym: "pia mater of neuraxis of hindbrain" EXACT [OBOL:automatic]
xref: EHDAA2:0000772
xref: HOG:0000466
xref: MA:0000990
is_a: UBERON:0003291 ! implied link automatically realized ! meninx of hindbrain
is_a: UBERON:0003549 ! implied link automatically realized ! brain pia mater
relationship: part_of UBERON:0002028
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0003555
name: spinal cord pia mater
def: "A pia mater that is part of a spinal cord [Obol]." [OBOL:automatic]
synonym: "pia mater of neuraxis of spinal cord" EXACT [OBOL:automatic]
synonym: "pia mater of spinal cord" EXACT [OBOL:automatic]
synonym: "spinal cord pia mater of neuraxis" EXACT [OBOL:automatic]
xref: EHDAA2:0001896
xref: HOG:0000468
xref: MA:0001133
xref: ncithesaurus:Spinal_Cord_Pia_Mater
is_a: UBERON:0002361 ! implied link automatically realized ! pia mater
is_a: UBERON:0003292 ! implied link automatically realized ! meninx of spinal cord
relationship: part_of UBERON:0002240
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0003556
name: forebrain arachnoid mater
def: "An arachnoid mater that is part of a forebrain [Obol]." [OBOL:automatic]
synonym: "arachnoid mater of forebrain" EXACT [OBOL:automatic]
synonym: "arachnoid mater of neuraxis of forebrain" EXACT [OBOL:automatic]
synonym: "arachnoid of forebrain" EXACT [OBOL:automatic]
synonym: "forebrain arachnoid" EXACT [OBOL:automatic]
synonym: "forebrain arachnoid mater of neuraxis" EXACT [OBOL:automatic]
xref: MA:0000884
is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges
is_a: UBERON:0005397 ! implied link automatically realized ! brain arachnoid mater
relationship: part_of UBERON:0001890
intersection_of: UBERON:0002362 ! arachnoid mater
intersection_of: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0003557
name: midbrain arachnoid mater
def: "An arachnoid mater that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "arachnoid mater of midbrain" EXACT [OBOL:automatic]
synonym: "arachnoid mater of neuraxis of midbrain" EXACT [OBOL:automatic]
synonym: "arachnoid of midbrain" EXACT [OBOL:automatic]
synonym: "midbrain arachnoid" EXACT [OBOL:automatic]
synonym: "midbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic]
xref: HOG:0000233
xref: MA:0001059
is_a: UBERON:0003288 ! implied link automatically realized ! meninx of midbrain
is_a: UBERON:0005397 ! implied link automatically realized ! brain arachnoid mater
relationship: part_of UBERON:0001891
intersection_of: UBERON:0002362 ! arachnoid mater
intersection_of: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0003558
name: diencephalon arachnoid mater
def: "An arachnoid mater that is part of a diencephalon [Obol]." [OBOL:automatic]
synonym: "arachnoid mater of between brain" EXACT [OBOL:automatic]
synonym: "arachnoid mater of diencephalon" EXACT [OBOL:automatic]
synonym: "arachnoid mater of interbrain" EXACT [OBOL:automatic]
synonym: "arachnoid mater of mature diencephalon" EXACT [OBOL:automatic]
synonym: "arachnoid mater of neuraxis of between brain" EXACT [OBOL:automatic]
synonym: "arachnoid mater of neuraxis of diencephalon" EXACT [OBOL:automatic]
synonym: "arachnoid mater of neuraxis of interbrain" EXACT [OBOL:automatic]
synonym: "arachnoid mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic]
synonym: "arachnoid of between brain" EXACT [OBOL:automatic]
synonym: "arachnoid of diencephalon" EXACT [OBOL:automatic]
synonym: "arachnoid of interbrain" EXACT [OBOL:automatic]
synonym: "arachnoid of mature diencephalon" EXACT [OBOL:automatic]
synonym: "between brain arachnoid" EXACT [OBOL:automatic]
synonym: "between brain arachnoid mater" EXACT [OBOL:automatic]
synonym: "between brain arachnoid mater of neuraxis" EXACT [OBOL:automatic]
synonym: "diencephalon arachnoid" EXACT [OBOL:automatic]
synonym: "diencephalon arachnoid mater of neuraxis" EXACT [OBOL:automatic]
synonym: "interbrain arachnoid" EXACT [OBOL:automatic]
synonym: "interbrain arachnoid mater" EXACT [OBOL:automatic]
synonym: "interbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic]
synonym: "mature diencephalon arachnoid" EXACT [OBOL:automatic]
synonym: "mature diencephalon arachnoid mater" EXACT [OBOL:automatic]
synonym: "mature diencephalon arachnoid mater of neuraxis" EXACT [OBOL:automatic]
xref: HOG:0000231
xref: MA:0000827
is_a: UBERON:0003290 ! implied link automatically realized ! meninx of diencephalon
is_a: UBERON:0003556 ! implied link automatically realized ! forebrain arachnoid mater
relationship: part_of UBERON:0001894
intersection_of: UBERON:0002362 ! arachnoid mater
intersection_of: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003559
name: hindbrain arachnoid mater
def: "An arachnoid mater that is part of a hindbrain [Obol]." [OBOL:automatic]
synonym: "arachnoid mater of hindbrain" EXACT [OBOL:automatic]
synonym: "arachnoid mater of neuraxis of hindbrain" EXACT [OBOL:automatic]
synonym: "arachnoid of hindbrain" EXACT [OBOL:automatic]
synonym: "hindbrain arachnoid" EXACT [OBOL:automatic]
synonym: "hindbrain arachnoid mater of neuraxis" EXACT [OBOL:automatic]
xref: HOG:0000236
xref: MA:0000988
is_a: UBERON:0003291 ! implied link automatically realized ! meninx of hindbrain
is_a: UBERON:0005397 ! implied link automatically realized ! brain arachnoid mater
relationship: part_of UBERON:0002028
intersection_of: UBERON:0002362 ! arachnoid mater
intersection_of: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0003560
name: spinal cord arachnoid mater
def: "An arachnoid mater that is part of a spinal cord [Obol]." [OBOL:automatic]
synonym: "arachnoid mater of neuraxis of spinal cord" EXACT [OBOL:automatic]
synonym: "arachnoid mater of spinal cord" EXACT [OBOL:automatic]
synonym: "arachnoid of spinal cord" EXACT [OBOL:automatic]
synonym: "spinal cord arachnoid" EXACT [OBOL:automatic]
synonym: "spinal cord arachnoid mater of neuraxis" EXACT [OBOL:automatic]
xref: HOG:0000234
xref: MA:0001131
is_a: UBERON:0002362 ! implied link automatically realized ! arachnoid mater
is_a: UBERON:0003292 ! implied link automatically realized ! meninx of spinal cord
relationship: part_of UBERON:0002240
intersection_of: UBERON:0002362 ! arachnoid mater
intersection_of: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0003561
name: forebrain dura mater
def: "A dura mater that is part of a forebrain [Obol]." [OBOL:automatic]
synonym: "dura mater of forebrain" EXACT [OBOL:automatic]
synonym: "dura mater of neuraxis of forebrain" EXACT [OBOL:automatic]
synonym: "forebrain dura mater of neuraxis" EXACT [OBOL:automatic]
xref: MA:0000885
is_a: UBERON:0002092 ! implied link automatically realized ! cranial dura mater
is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges
relationship: part_of UBERON:0001890
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0003562
name: midbrain dura mater
def: "A dura mater that is part of a midbrain [Obol]." [OBOL:automatic]
synonym: "dura mater of midbrain" EXACT [OBOL:automatic]
synonym: "dura mater of neuraxis of midbrain" EXACT [OBOL:automatic]
synonym: "midbrain dura mater of neuraxis" EXACT [OBOL:automatic]
xref: HOG:0000410
xref: MA:0001060
is_a: UBERON:0002092 ! implied link automatically realized ! cranial dura mater
is_a: UBERON:0003288 ! implied link automatically realized ! meninx of midbrain
relationship: part_of UBERON:0001891
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0003563
name: telencephalon dura mater
def: "A dura mater that is part of a telencephalon [Obol]." [OBOL:automatic]
synonym: "dura mater of neuraxis of telencephalon" EXACT [OBOL:automatic]
synonym: "dura mater of telencephalon" EXACT [OBOL:automatic]
synonym: "telencephalon dura mater of neuraxis" EXACT [OBOL:automatic]
xref: MA:0000981
is_a: UBERON:0003289 ! implied link automatically realized ! meninx of telencephalon
is_a: UBERON:0003561 ! implied link automatically realized ! forebrain dura mater
relationship: part_of UBERON:0001893
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0003564
name: diencephalon dura mater
def: "A dura mater that is part of a diencephalon [Obol]." [OBOL:automatic]
synonym: "between brain dura mater" EXACT [OBOL:automatic]
synonym: "between brain dura mater of neuraxis" EXACT [OBOL:automatic]
synonym: "diencephalon dura mater of neuraxis" EXACT [OBOL:automatic]
synonym: "dura mater of between brain" EXACT [OBOL:automatic]
synonym: "dura mater of diencephalon" EXACT [OBOL:automatic]
synonym: "dura mater of interbrain" EXACT [OBOL:automatic]
synonym: "dura mater of mature diencephalon" EXACT [OBOL:automatic]
synonym: "dura mater of neuraxis of between brain" EXACT [OBOL:automatic]
synonym: "dura mater of neuraxis of diencephalon" EXACT [OBOL:automatic]
synonym: "dura mater of neuraxis of interbrain" EXACT [OBOL:automatic]
synonym: "dura mater of neuraxis of mature diencephalon" EXACT [OBOL:automatic]
synonym: "interbrain dura mater" EXACT [OBOL:automatic]
synonym: "interbrain dura mater of neuraxis" EXACT [OBOL:automatic]
synonym: "mature diencephalon dura mater" EXACT [OBOL:automatic]
synonym: "mature diencephalon dura mater of neuraxis" EXACT [OBOL:automatic]
xref: HOG:0000258
xref: MA:0000828
is_a: UBERON:0003290 ! implied link automatically realized ! meninx of diencephalon
is_a: UBERON:0003561 ! implied link automatically realized ! forebrain dura mater
relationship: part_of UBERON:0001894
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003565
name: hindbrain dura mater
def: "A dura mater that is part of a hindbrain [Obol]." [OBOL:automatic]
synonym: "dura mater of hindbrain" EXACT [OBOL:automatic]
synonym: "dura mater of neuraxis of hindbrain" EXACT [OBOL:automatic]
synonym: "hindbrain dura mater of neuraxis" EXACT [OBOL:automatic]
xref: HOG:0000409
xref: MA:0000989
is_a: UBERON:0002092 ! implied link automatically realized ! cranial dura mater
is_a: UBERON:0003291 ! implied link automatically realized ! meninx of hindbrain
relationship: part_of UBERON:0002028
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0003566
name: head connective tissue
def: "A portion of connective tissue that is part of a head [Obol]." [OBOL:automatic]
synonym: "adult head connective tissue" EXACT [OBOL:automatic]
synonym: "adult head portion of connective tissue" EXACT [OBOL:automatic]
synonym: "adult head textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of adult head" EXACT [OBOL:automatic]
synonym: "connective tissue of head" EXACT [OBOL:automatic]
synonym: "head portion of connective tissue" EXACT [OBOL:automatic]
synonym: "head textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of adult head" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of head" EXACT [OBOL:automatic]
synonym: "textus connectivus of adult head" EXACT [OBOL:automatic]
synonym: "textus connectivus of head" EXACT [OBOL:automatic]
xref: MA:0000577
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
relationship: part_of UBERON:0000033
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003567
name: abdomen connective tissue
def: "A portion of connective tissue that is part of an abdomen [Obol]." [OBOL:automatic]
synonym: "abdomen portion of connective tissue" EXACT [OBOL:automatic]
synonym: "abdomen textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of abdomen" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of abdomen" EXACT [OBOL:automatic]
synonym: "textus connectivus of abdomen" EXACT [OBOL:automatic]
xref: MA:0000519
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
relationship: part_of UBERON:0000916
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003568
name: neck connective tissue
def: "A portion of connective tissue that is part of a neck [Obol]." [OBOL:automatic]
synonym: "connective tissue of neck" EXACT [OBOL:automatic]
synonym: "connective tissue of neck (volume)" EXACT [OBOL:automatic]
synonym: "neck (volume) connective tissue" EXACT [OBOL:automatic]
synonym: "neck (volume) portion of connective tissue" EXACT [OBOL:automatic]
synonym: "neck (volume) textus connectivus" EXACT [OBOL:automatic]
synonym: "neck portion of connective tissue" EXACT [OBOL:automatic]
synonym: "neck textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of neck" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of neck (volume)" EXACT [OBOL:automatic]
synonym: "textus connectivus of neck" EXACT [OBOL:automatic]
synonym: "textus connectivus of neck (volume)" EXACT [OBOL:automatic]
xref: MA:0000585
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
relationship: part_of UBERON:0000974
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0003569
name: leg connective tissue
def: "A portion of connective tissue that is part of a leg [Obol]." [OBOL:automatic]
synonym: "connective tissue of leg" EXACT [OBOL:automatic]
synonym: "leg portion of connective tissue" EXACT [OBOL:automatic]
synonym: "leg textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of leg" EXACT [OBOL:automatic]
synonym: "textus connectivus of leg" EXACT [OBOL:automatic]
xref: MA:0000671
is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue
relationship: part_of UBERON:0000978
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003570
name: respiratory system connective tissue
def: "A portion of connective tissue that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius connective tissue" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius portion of connective tissue" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "connective tissue of respiratory system" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system portion of connective tissue" EXACT [OBOL:automatic]
synonym: "respiratory system textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "textus connectivus of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001814
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
relationship: part_of UBERON:0001004
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003571
name: trachea connective tissue
synonym: "connective tissue of trachea" EXACT [OBOL:automatic]
synonym: "connective tissue of windpipe" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of trachea" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of windpipe" EXACT [OBOL:automatic]
synonym: "textus connectivus of trachea" EXACT [OBOL:automatic]
synonym: "textus connectivus of windpipe" EXACT [OBOL:automatic]
synonym: "trachea portion of connective tissue" EXACT [OBOL:automatic]
synonym: "trachea textus connectivus" EXACT [OBOL:automatic]
synonym: "windpipe connective tissue" EXACT [OBOL:automatic]
synonym: "windpipe portion of connective tissue" EXACT [OBOL:automatic]
synonym: "windpipe textus connectivus" EXACT [OBOL:automatic]
xref: MA:0001853
is_a: UBERON:0003580 ! implied link automatically realized ! lower respiratory tract connective tissue
is_a: UBERON:0003593 ! implied link automatically realized ! thoracic cavity connective tissue
relationship: part_of UBERON:0003126
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0003572
name: chest connective tissue
def: "A portion of connective tissue that is part of a chest [Obol]." [OBOL:automatic]
synonym: "anterior thoracic region connective tissue" EXACT [OBOL:automatic]
synonym: "anterior thoracic region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "anterior thoracic region textus connectivus" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax connective tissue" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax portion of connective tissue" EXACT [OBOL:automatic]
synonym: "anterolateral part of thorax textus connectivus" EXACT [OBOL:automatic]
synonym: "chest portion of connective tissue" EXACT [OBOL:automatic]
synonym: "chest textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "connective tissue of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "connective tissue of chest" EXACT [OBOL:automatic]
synonym: "connective tissue of front of thorax" EXACT [OBOL:automatic]
synonym: "front of thorax connective tissue" EXACT [OBOL:automatic]
synonym: "front of thorax portion of connective tissue" EXACT [OBOL:automatic]
synonym: "front of thorax textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of chest" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of front of thorax" EXACT [OBOL:automatic]
synonym: "textus connectivus of anterior thoracic region" EXACT [OBOL:automatic]
synonym: "textus connectivus of anterolateral part of thorax" EXACT [OBOL:automatic]
synonym: "textus connectivus of chest" EXACT [OBOL:automatic]
synonym: "textus connectivus of front of thorax" EXACT [OBOL:automatic]
xref: MA:0000550
is_a: UBERON:0003837 ! implied link automatically realized ! thoracic segment connective tissue
relationship: part_of UBERON:0001443
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0003573
name: arm connective tissue
def: "A portion of connective tissue that is part of an arm [Obol]." [OBOL:automatic]
synonym: "arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "arm textus connectivus" EXACT [OBOL:automatic]
synonym: "brachial region connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of brachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of brachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of brachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of proximal segment of free upper limb" EXACT [OBOL:automatic]
xref: MA:0000593
is_a: UBERON:0003588 ! implied link automatically realized ! forelimb connective tissue
relationship: part_of UBERON:0001460
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003574
name: elbow connective tissue
def: "A portion of connective tissue that is part of a elbow [Obol]." [OBOL:automatic]
synonym: "connective tissue of cubital region" EXACT [OBOL:automatic]
synonym: "connective tissue of elbow" EXACT [OBOL:automatic]
synonym: "cubital region connective tissue" EXACT [OBOL:automatic]
synonym: "cubital region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "cubital region textus connectivus" EXACT [OBOL:automatic]
synonym: "elbow portion of connective tissue" EXACT [OBOL:automatic]
synonym: "elbow textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of cubital region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of elbow" EXACT [OBOL:automatic]
synonym: "textus connectivus of cubital region" EXACT [OBOL:automatic]
synonym: "textus connectivus of elbow" EXACT [OBOL:automatic]
xref: MA:0000609
is_a: UBERON:0003573 ! implied link automatically realized ! arm connective tissue
relationship: part_of UBERON:0001461
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001461 ! elbow
[Term]
id: UBERON:0003575
name: wrist connective tissue
def: "A portion of connective tissue that is part of a wrist [Obol]." [OBOL:automatic]
synonym: "carpal region connective tissue" EXACT [OBOL:automatic]
synonym: "carpal region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "carpal region textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of carpal region" EXACT [OBOL:automatic]
synonym: "connective tissue of wrist" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of carpal region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of wrist" EXACT [OBOL:automatic]
synonym: "textus connectivus of carpal region" EXACT [OBOL:automatic]
synonym: "textus connectivus of wrist" EXACT [OBOL:automatic]
synonym: "wrist portion of connective tissue" EXACT [OBOL:automatic]
synonym: "wrist textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000636
is_a: UBERON:0003573 ! implied link automatically realized ! arm connective tissue
relationship: part_of UBERON:0001462
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0003576
name: hip connective tissue
def: "A portion of connective tissue that is part of a hip [Obol]." [OBOL:automatic]
synonym: "connective tissue of hip" EXACT [OBOL:automatic]
synonym: "connective tissue of hip region" EXACT [OBOL:automatic]
synonym: "connective tissue of regio coxae" EXACT [OBOL:automatic]
synonym: "hip portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hip region connective tissue" EXACT [OBOL:automatic]
synonym: "hip region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hip region textus connectivus" EXACT [OBOL:automatic]
synonym: "hip textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hip" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hip region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of regio coxae" EXACT [OBOL:automatic]
synonym: "regio coxae connective tissue" EXACT [OBOL:automatic]
synonym: "regio coxae portion of connective tissue" EXACT [OBOL:automatic]
synonym: "regio coxae textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of hip" EXACT [OBOL:automatic]
synonym: "textus connectivus of hip region" EXACT [OBOL:automatic]
synonym: "textus connectivus of regio coxae" EXACT [OBOL:automatic]
xref: MA:0000656
is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001464
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0003577
name: knee connective tissue
def: "A portion of connective tissue that is part of a knee [Obol]." [OBOL:automatic]
synonym: "connective tissue of knee" EXACT [OBOL:automatic]
synonym: "knee portion of connective tissue" EXACT [OBOL:automatic]
synonym: "knee textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of knee" EXACT [OBOL:automatic]
synonym: "textus connectivus of knee" EXACT [OBOL:automatic]
xref: MA:0000667
is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue
relationship: part_of UBERON:0001465
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0003578
name: foot digit connective tissue
def: "A portion of connective tissue that is part of a toe [Obol]." [OBOL:automatic]
synonym: "connective tissue of digit of foot" EXACT [OBOL:automatic]
synonym: "connective tissue of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "connective tissue of digitus pedis" EXACT [OBOL:automatic]
synonym: "connective tissue of foot digit" EXACT [OBOL:automatic]
synonym: "connective tissue of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "connective tissue of toe" EXACT [OBOL:automatic]
synonym: "digit of foot connective tissue" EXACT [OBOL:automatic]
synonym: "digit of foot portion of connective tissue" EXACT [OBOL:automatic]
synonym: "digit of foot textus connectivus" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb connective tissue" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb textus connectivus" EXACT [OBOL:automatic]
synonym: "digitus pedis connective tissue" EXACT [OBOL:automatic]
synonym: "digitus pedis portion of connective tissue" EXACT [OBOL:automatic]
synonym: "digitus pedis textus connectivus" EXACT [OBOL:automatic]
synonym: "foot digit portion of connective tissue" EXACT [OBOL:automatic]
synonym: "foot digit textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of digit of foot" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of digitus pedis" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of foot digit" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of toe" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit portion of connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of digit of foot" EXACT [OBOL:automatic]
synonym: "textus connectivus of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of digitus pedis" EXACT [OBOL:automatic]
synonym: "textus connectivus of foot digit" EXACT [OBOL:automatic]
synonym: "textus connectivus of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "textus connectivus of toe" EXACT [OBOL:automatic]
synonym: "toe connective tissue" EXACT [OBOL:automatic]
synonym: "toe portion of connective tissue" EXACT [OBOL:automatic]
synonym: "toe textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000647
is_a: UBERON:0003595 ! implied link automatically realized ! foot connective tissue
relationship: part_of UBERON:0001466
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0003579
name: shoulder connective tissue
def: "A portion of connective tissue that is part of a shoulder [Obol]." [OBOL:automatic]
synonym: "connective tissue of shoulder" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of shoulder" EXACT [OBOL:automatic]
synonym: "shoulder portion of connective tissue" EXACT [OBOL:automatic]
synonym: "shoulder textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of shoulder" EXACT [OBOL:automatic]
xref: MA:0000632
is_a: UBERON:0003572 ! implied link automatically realized ! chest connective tissue
is_a: UBERON:0003588 ! implied link automatically realized ! forelimb connective tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001467
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003580
name: lower respiratory tract connective tissue
def: "A portion of connective tissue that is part of a lower respiratory tract [Obol]." [OBOL:automatic]
synonym: "connective tissue of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "lower respiratory tract portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower respiratory tract textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower respiratory tract" EXACT [OBOL:automatic]
xref: MA:0002409
is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001558
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001558 ! lower respiratory tract
[Term]
id: UBERON:0003581
name: eyelid connective tissue
def: "A portion of connective tissue that is part of a eyelid [Obol]." [OBOL:automatic]
synonym: "blepharon connective tissue" EXACT [OBOL:automatic]
synonym: "blepharon portion of connective tissue" EXACT [OBOL:automatic]
synonym: "blepharon textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of blepharon" EXACT [OBOL:automatic]
synonym: "connective tissue of eyelid" EXACT [OBOL:automatic]
synonym: "eyelid portion of connective tissue" EXACT [OBOL:automatic]
synonym: "eyelid textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of blepharon" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of eyelid" EXACT [OBOL:automatic]
synonym: "textus connectivus of blepharon" EXACT [OBOL:automatic]
synonym: "textus connectivus of eyelid" EXACT [OBOL:automatic]
xref: MA:0001251
xref: ncithesaurus:Eyelid_Connective_Tissue
is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue
relationship: part_of UBERON:0001711
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0003582
name: nasopharynx connective tissue
def: "A portion of connective tissue that is part of a nasopharynx [Obol]." [OBOL:automatic]
synonym: "connective tissue of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "connective tissue of nasopharynx" EXACT [OBOL:automatic]
synonym: "connective tissue of rhinopharynx" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx connective tissue" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx portion of connective tissue" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx textus connectivus" EXACT [OBOL:automatic]
synonym: "nasopharynx portion of connective tissue" EXACT [OBOL:automatic]
synonym: "nasopharynx textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of nasopharynx" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of rhinopharynx" EXACT [OBOL:automatic]
synonym: "rhinopharynx connective tissue" EXACT [OBOL:automatic]
synonym: "rhinopharynx portion of connective tissue" EXACT [OBOL:automatic]
synonym: "rhinopharynx textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "textus connectivus of nasopharynx" EXACT [OBOL:automatic]
synonym: "textus connectivus of rhinopharynx" EXACT [OBOL:automatic]
xref: MA:0001864
is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001728
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001728 ! nasopharynx
[Term]
id: UBERON:0003583
name: larynx connective tissue
def: "A portion of connective tissue that is part of a larynx [Obol]." [OBOL:automatic]
synonym: "connective tissue of larynx" EXACT [OBOL:automatic]
synonym: "larynx portion of connective tissue" EXACT [OBOL:automatic]
synonym: "larynx textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of larynx" EXACT [OBOL:automatic]
synonym: "textus connectivus of larynx" EXACT [OBOL:automatic]
xref: MA:0001754
is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001737
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0003584
name: mammary gland connective tissue
def: "the fibrous supportive tissue of the mammary gland." [MP:0009507]
synonym: "connective tissue of lactiferous gland" EXACT [OBOL:automatic]
synonym: "connective tissue of lobe of breast" EXACT [OBOL:automatic]
synonym: "connective tissue of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "connective tissue of mammary gland" EXACT [OBOL:automatic]
synonym: "lactiferous gland connective tissue" EXACT [OBOL:automatic]
synonym: "lactiferous gland portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lactiferous gland textus connectivus" EXACT [OBOL:automatic]
synonym: "lobe of breast connective tissue" EXACT [OBOL:automatic]
synonym: "lobe of breast portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lobe of breast textus connectivus" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland connective tissue" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland textus connectivus" EXACT [OBOL:automatic]
synonym: "mammary gland portion of connective tissue" EXACT [OBOL:automatic]
synonym: "mammary gland textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lactiferous gland" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lobe of breast" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of mammary gland" EXACT [OBOL:automatic]
synonym: "textus connectivus of lactiferous gland" EXACT [OBOL:automatic]
synonym: "textus connectivus of lobe of breast" EXACT [OBOL:automatic]
synonym: "textus connectivus of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "textus connectivus of mammary gland" EXACT [OBOL:automatic]
xref: FMA:74479
xref: MA:0002897
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001911
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0003585
name: dermis connective tissue
def: "A portion of connective tissue that is part of a dermis [Obol]." [OBOL:automatic]
synonym: "connective tissue of dermis" EXACT [OBOL:automatic]
synonym: "dermis portion of connective tissue" EXACT [OBOL:automatic]
synonym: "dermis textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of dermis" EXACT [OBOL:automatic]
synonym: "textus connectivus of dermis" EXACT [OBOL:automatic]
xref: MA:0000799
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002067
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002067 ! dermis
[Term]
id: UBERON:0003586
name: trunk connective tissue
def: "A portion of connective tissue that is part of a trunk [Obol]." [OBOL:automatic]
synonym: "connective tissue of torso" EXACT [OBOL:automatic]
synonym: "connective tissue of trunk" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of torso" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of trunk" EXACT [OBOL:automatic]
synonym: "textus connectivus of torso" EXACT [OBOL:automatic]
synonym: "textus connectivus of trunk" EXACT [OBOL:automatic]
synonym: "torso connective tissue" EXACT [OBOL:automatic]
synonym: "torso portion of connective tissue" EXACT [OBOL:automatic]
synonym: "torso textus connectivus" EXACT [OBOL:automatic]
synonym: "trunk portion of connective tissue" EXACT [OBOL:automatic]
synonym: "trunk textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000513
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
relationship: part_of UBERON:0002100
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0003587
name: limb connective tissue
def: "A portion of connective tissue that is part of a limb [Obol]." [OBOL:automatic]
synonym: "connective tissue of limb" EXACT [OBOL:automatic]
synonym: "limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "limb textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of limb" EXACT [OBOL:automatic]
xref: MA:0000689
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
relationship: part_of UBERON:0002101
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003588
name: forelimb connective tissue
def: "A portion of connective tissue that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb connective tissue" EXACT [OBOL:automatic]
synonym: "anteriormost limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "anteriormost limb textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of anteriormost limb" EXACT [OBOL:automatic]
synonym: "connective tissue of fore limb" EXACT [OBOL:automatic]
synonym: "connective tissue of forelimb" EXACT [OBOL:automatic]
synonym: "connective tissue of superior member" EXACT [OBOL:automatic]
synonym: "connective tissue of upper extremity" EXACT [OBOL:automatic]
synonym: "fore limb connective tissue" EXACT [OBOL:automatic]
synonym: "fore limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "fore limb textus connectivus" EXACT [OBOL:automatic]
synonym: "forelimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "forelimb textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of anteriormost limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of fore limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of forelimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of superior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of upper extremity" EXACT [OBOL:automatic]
synonym: "superior member connective tissue" EXACT [OBOL:automatic]
synonym: "superior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "superior member textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of anteriormost limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of fore limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of forelimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of superior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of upper extremity" EXACT [OBOL:automatic]
synonym: "upper extremity connective tissue" EXACT [OBOL:automatic]
synonym: "upper extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "upper extremity textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000613
is_a: UBERON:0003587 ! implied link automatically realized ! limb connective tissue
relationship: part_of UBERON:0002102
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003589
name: hindlimb connective tissue
def: "A portion of connective tissue that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "connective tissue of hind limb" EXACT [OBOL:automatic]
synonym: "connective tissue of hindlimb" EXACT [OBOL:automatic]
synonym: "connective tissue of inferior member" EXACT [OBOL:automatic]
synonym: "connective tissue of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb textus connectivus" EXACT [OBOL:automatic]
synonym: "hindlimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb textus connectivus" EXACT [OBOL:automatic]
synonym: "inferior member connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member textus connectivus" EXACT [OBOL:automatic]
synonym: "lower extremity connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hind limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hindlimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of inferior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower extremity" EXACT [OBOL:automatic]
synonym: "textus connectivus of hind limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of hindlimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of inferior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower extremity" EXACT [OBOL:automatic]
xref: MA:0000661
is_a: UBERON:0003587 ! implied link automatically realized ! limb connective tissue
relationship: part_of UBERON:0002103
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003590
name: main bronchus connective tissue
def: "A portion of connective tissue that is part of a main bronchus [Obol]." [OBOL:automatic]
synonym: "bronchus principalis connective tissue" EXACT [OBOL:automatic]
synonym: "bronchus principalis portion of connective tissue" EXACT [OBOL:automatic]
synonym: "bronchus principalis textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of bronchus principalis" EXACT [OBOL:automatic]
synonym: "connective tissue of main bronchus" EXACT [OBOL:automatic]
synonym: "connective tissue of primary bronchus" EXACT [OBOL:automatic]
synonym: "connective tissue of principal bronchus" EXACT [OBOL:automatic]
synonym: "main bronchus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "main bronchus textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of bronchus principalis" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of main bronchus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of primary bronchus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of principal bronchus" EXACT [OBOL:automatic]
synonym: "primary bronchus connective tissue" EXACT [OBOL:automatic]
synonym: "primary bronchus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "primary bronchus textus connectivus" EXACT [OBOL:automatic]
synonym: "principal bronchus connective tissue" EXACT [OBOL:automatic]
synonym: "principal bronchus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "principal bronchus textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of bronchus principalis" EXACT [OBOL:automatic]
synonym: "textus connectivus of main bronchus" EXACT [OBOL:automatic]
synonym: "textus connectivus of primary bronchus" EXACT [OBOL:automatic]
synonym: "textus connectivus of principal bronchus" EXACT [OBOL:automatic]
xref: MA:0001845
is_a: UBERON:0003592 ! implied link automatically realized ! bronchus connective tissue
relationship: part_of UBERON:0002182
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0003591
name: lobar bronchus connective tissue
def: "A portion of connective tissue that is part of a lobar bronchus [Obol]." [OBOL:automatic]
synonym: "connective tissue of lobar bronchus" EXACT [OBOL:automatic]
synonym: "connective tissue of secondary bronchus" EXACT [OBOL:automatic]
synonym: "lobar bronchus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lobar bronchus textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lobar bronchus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of secondary bronchus" EXACT [OBOL:automatic]
synonym: "secondary bronchus connective tissue" EXACT [OBOL:automatic]
synonym: "secondary bronchus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "secondary bronchus textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of lobar bronchus" EXACT [OBOL:automatic]
synonym: "textus connectivus of secondary bronchus" EXACT [OBOL:automatic]
xref: MA:0001841
is_a: UBERON:0000114 ! implied link automatically realized ! lung connective tissue
is_a: UBERON:0003592 ! implied link automatically realized ! bronchus connective tissue
relationship: part_of UBERON:0002183
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0003592
name: bronchus connective tissue
def: "A portion of connective tissue that is part of a bronchus [Obol]." [OBOL:automatic]
synonym: "bronchi connective tissue" EXACT [OBOL:automatic]
synonym: "bronchi portion of connective tissue" EXACT [OBOL:automatic]
synonym: "bronchi textus connectivus" EXACT [OBOL:automatic]
synonym: "bronchial trunk connective tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk portion of connective tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk textus connectivus" EXACT [OBOL:automatic]
synonym: "bronchus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "bronchus textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of bronchi" EXACT [OBOL:automatic]
synonym: "connective tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "connective tissue of bronchus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of bronchi" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of bronchus" EXACT [OBOL:automatic]
synonym: "textus connectivus of bronchi" EXACT [OBOL:automatic]
synonym: "textus connectivus of bronchial trunk" EXACT [OBOL:automatic]
synonym: "textus connectivus of bronchus" EXACT [OBOL:automatic]
xref: MA:0001831
xref: ncithesaurus:Bronchus_Connective_Tissue
is_a: UBERON:0003580 ! implied link automatically realized ! lower respiratory tract connective tissue
is_a: UBERON:0003593 ! implied link automatically realized ! thoracic cavity connective tissue
relationship: part_of UBERON:0002185
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0003593
name: thoracic cavity connective tissue
def: "A portion of connective tissue that is part of a thoracic cavity [Obol]." [OBOL:automatic]
synonym: "cavity of chest connective tissue" EXACT [OBOL:automatic]
synonym: "cavity of chest portion of connective tissue" EXACT [OBOL:automatic]
synonym: "cavity of chest textus connectivus" EXACT [OBOL:automatic]
synonym: "cavity of thorax connective tissue" EXACT [OBOL:automatic]
synonym: "cavity of thorax portion of connective tissue" EXACT [OBOL:automatic]
synonym: "cavity of thorax textus connectivus" EXACT [OBOL:automatic]
synonym: "chest cavity connective tissue" EXACT [OBOL:automatic]
synonym: "chest cavity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "chest cavity textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of cavity of chest" EXACT [OBOL:automatic]
synonym: "connective tissue of cavity of thorax" EXACT [OBOL:automatic]
synonym: "connective tissue of chest cavity" EXACT [OBOL:automatic]
synonym: "connective tissue of pectoral cavity" EXACT [OBOL:automatic]
synonym: "connective tissue of thoracic cavity" EXACT [OBOL:automatic]
synonym: "pectoral cavity connective tissue" EXACT [OBOL:automatic]
synonym: "pectoral cavity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "pectoral cavity textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of cavity of chest" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of cavity of thorax" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of chest cavity" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of pectoral cavity" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of thoracic cavity" EXACT [OBOL:automatic]
synonym: "textus connectivus of cavity of chest" EXACT [OBOL:automatic]
synonym: "textus connectivus of cavity of thorax" EXACT [OBOL:automatic]
synonym: "textus connectivus of chest cavity" EXACT [OBOL:automatic]
synonym: "textus connectivus of pectoral cavity" EXACT [OBOL:automatic]
synonym: "textus connectivus of thoracic cavity" EXACT [OBOL:automatic]
synonym: "thoracic cavity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "thoracic cavity textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000555
is_a: UBERON:0003837 ! implied link automatically realized ! thoracic segment connective tissue
relationship: part_of UBERON:0002224
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003594
name: pelvis connective tissue
def: "A portion of connective tissue that is part of a pelvis [Obol]." [OBOL:automatic]
synonym: "connective tissue of pelvis" EXACT [OBOL:automatic]
synonym: "pelvis portion of connective tissue" EXACT [OBOL:automatic]
synonym: "pelvis textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of pelvis" EXACT [OBOL:automatic]
synonym: "textus connectivus of pelvis" EXACT [OBOL:automatic]
xref: MA:0000533
is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue
relationship: part_of UBERON:0002355
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0003595
name: foot connective tissue
def: "A portion of connective tissue that is part of a foot [Obol]." [OBOL:automatic]
synonym: "autopod of hind limb connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of hind limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of hind limb textus connectivus" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of hindlimb textus connectivus" EXACT [OBOL:automatic]
synonym: "autopod of inferior member connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of inferior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of inferior member textus connectivus" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of lower extremity textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "connective tissue of foot" EXACT [OBOL:automatic]
synonym: "connective tissue of hind limb autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of inferior member autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hind limb textus connectivus" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of hindlimb textus connectivus" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of inferior member textus connectivus" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of lower extremity textus connectivus" EXACT [OBOL:automatic]
synonym: "foot portion of connective tissue" EXACT [OBOL:automatic]
synonym: "foot textus connectivus" EXACT [OBOL:automatic]
synonym: "hind limb autopod connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "hindlimb autopod connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "inferior member autopod connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "lower extremity autopod connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of foot" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hind limb autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of inferior member autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of hind limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of hindlimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of inferior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of lower extremity" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "textus connectivus of foot" EXACT [OBOL:automatic]
synonym: "textus connectivus of hind limb autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of hind limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of hindlimb autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of hindlimb distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of inferior member autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of inferior member distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower extremity autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower extremity distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of terminal segment of free lower limb" EXACT [OBOL:automatic]
xref: MA:0000644
is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue
relationship: part_of UBERON:0002387
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0003596
name: ankle connective tissue
def: "A portion of connective tissue that is part of an ankle [Obol]." [OBOL:automatic]
synonym: "ankle portion of connective tissue" EXACT [OBOL:automatic]
synonym: "ankle textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of ankle" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of ankle" EXACT [OBOL:automatic]
synonym: "textus connectivus of ankle" EXACT [OBOL:automatic]
xref: MA:0000639
is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue
relationship: part_of UBERON:0002388
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002388 ! ankle
[Term]
id: UBERON:0003597
name: hand digit connective tissue
def: "A portion of connective tissue that is part of a finger [Obol]." [OBOL:automatic]
synonym: "connective tissue of digit of hand" EXACT [OBOL:automatic]
synonym: "connective tissue of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of digitus manus" EXACT [OBOL:automatic]
synonym: "connective tissue of finger" EXACT [OBOL:automatic]
synonym: "connective tissue of hand digit" EXACT [OBOL:automatic]
synonym: "connective tissue of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "digit of hand connective tissue" EXACT [OBOL:automatic]
synonym: "digit of hand portion of connective tissue" EXACT [OBOL:automatic]
synonym: "digit of hand textus connectivus" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "digitus manus connective tissue" EXACT [OBOL:automatic]
synonym: "digitus manus portion of connective tissue" EXACT [OBOL:automatic]
synonym: "digitus manus textus connectivus" EXACT [OBOL:automatic]
synonym: "finger connective tissue" EXACT [OBOL:automatic]
synonym: "finger portion of connective tissue" EXACT [OBOL:automatic]
synonym: "finger textus connectivus" EXACT [OBOL:automatic]
synonym: "hand digit portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hand digit textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of digit of hand" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of digitus manus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of finger" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hand digit" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit portion of connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of digit of hand" EXACT [OBOL:automatic]
synonym: "textus connectivus of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of digitus manus" EXACT [OBOL:automatic]
synonym: "textus connectivus of finger" EXACT [OBOL:automatic]
synonym: "textus connectivus of hand digit" EXACT [OBOL:automatic]
synonym: "textus connectivus of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
xref: MA:0000623
is_a: UBERON:0003598 ! implied link automatically realized ! hand connective tissue
relationship: part_of UBERON:0002389
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0003598
name: hand connective tissue
def: "A portion of connective tissue that is part of a hand [Obol]." [OBOL:automatic]
synonym: "arm autopod connective tissue" EXACT [OBOL:automatic]
synonym: "arm autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "arm autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "arm distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "autopod of arm connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of arm textus connectivus" EXACT [OBOL:automatic]
synonym: "autopod of brachial region connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of brachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of brachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "autopod of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "brachial region autopod connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of arm autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of brachial region autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of hand" EXACT [OBOL:automatic]
synonym: "connective tissue of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "connective tissue of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of arm textus connectivus" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of brachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "distal free limb segment of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "hand portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hand textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of arm autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of brachial region autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hand" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb autopod textus connectivus" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb distal free limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of arm autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of arm distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of brachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of autopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of brachial region autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of brachial region distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of distal free limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of hand" EXACT [OBOL:automatic]
synonym: "textus connectivus of proximal segment of free upper limb autopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of proximal segment of free upper limb distal free limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of terminal segment of free upper limb" EXACT [OBOL:automatic]
xref: MA:0000620
is_a: UBERON:0003588 ! implied link automatically realized ! forelimb connective tissue
relationship: part_of UBERON:0002398
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0003599
name: tail connective tissue
def: "A portion of connective tissue that is part of a tail [Obol]." [OBOL:automatic]
synonym: "connective tissue of post-vent region" EXACT [OBOL:automatic]
synonym: "connective tissue of tail" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of post-vent region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of tail" EXACT [OBOL:automatic]
synonym: "post-vent region connective tissue" EXACT [OBOL:automatic]
synonym: "post-vent region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "post-vent region textus connectivus" EXACT [OBOL:automatic]
synonym: "tail portion of connective tissue" EXACT [OBOL:automatic]
synonym: "tail textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of post-vent region" EXACT [OBOL:automatic]
synonym: "textus connectivus of tail" EXACT [OBOL:automatic]
xref: MA:0000697
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
relationship: part_of UBERON:0002415
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002415 ! tail
[Term]
id: UBERON:0003601
name: neck cartilage
def: "A cartilage that is part of a neck [Obol]." [OBOL:automatic]
synonym: "cartilage of neck" EXACT [OBOL:automatic]
synonym: "cartilage of neck (volume)" EXACT [OBOL:automatic]
synonym: "neck (volume) cartilage" EXACT [OBOL:automatic]
xref: MA:0000586
is_a: UBERON:0002418 ! implied link automatically realized ! cartilage
is_a: UBERON:0003568 ! implied link automatically realized ! neck connective tissue
relationship: part_of UBERON:0000974
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0003603
name: lower respiratory tract cartilage
def: "A cartilage that is part of a lower respiratory tract [Obol]." [OBOL:automatic]
synonym: "cartilage of lower respiratory tract" EXACT [OBOL:automatic]
xref: MA:0001819
xref: ncithesaurus:Lower_Respiratory_Tract_Cartilage
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003406 ! implied link automatically realized ! cartilage of respiratory system
is_a: UBERON:0003580 ! implied link automatically realized ! lower respiratory tract connective tissue
relationship: part_of UBERON:0001558
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0001558 ! lower respiratory tract
[Term]
id: UBERON:0003604
name: trachea cartilage
def: "A cartilage that is part of a trachea [Obol]." [OBOL:automatic]
synonym: "cartilage of trachea" EXACT [OBOL:automatic]
synonym: "cartilage of windpipe" EXACT [OBOL:automatic]
synonym: "cartilaginous trachea cartilage" EXACT [OBOL:automatic]
synonym: "tracheal cartilage" EXACT [FMA:7434]
synonym: "windpipe cartilage" EXACT [OBOL:automatic]
xref: FMA:7434
xref: MA:0001857
xref: ncithesaurus:Trachea_Cartilage
is_a: UBERON:0003571 ! implied link automatically realized ! trachea connective tissue
is_a: UBERON:0003603 ! implied link automatically realized ! lower respiratory tract cartilage
relationship: part_of UBERON:0003126
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0003605
name: eye skin gland
def: "A skin gland that is part of a camera-type eye [Obol]." [OBOL:automatic]
synonym: "camera-type eye skin gland" EXACT [OBOL:automatic]
synonym: "camera-type eye skin glands" EXACT [OBOL:automatic]
synonym: "camera-type eye skin glands set" EXACT [OBOL:automatic]
synonym: "skin gland of camera-type eye" EXACT [OBOL:automatic]
synonym: "skin gland of vertebrate eye" EXACT [OBOL:automatic]
synonym: "skin glands of camera-type eye" EXACT [OBOL:automatic]
synonym: "skin glands of vertebrate eye" EXACT [OBOL:automatic]
synonym: "skin glands set of camera-type eye" EXACT [OBOL:automatic]
synonym: "skin glands set of vertebrate eye" EXACT [OBOL:automatic]
synonym: "vertebrate eye skin gland" EXACT [OBOL:automatic]
synonym: "vertebrate eye skin glands" EXACT [OBOL:automatic]
synonym: "vertebrate eye skin glands set" EXACT [OBOL:automatic]
xref: MA:0002451
is_a: UBERON:0002419 ! implied link automatically realized ! skin gland
is_a: UBERON:0004859 ! implied link automatically realized ! eye gland
relationship: part_of UBERON:0000019
intersection_of: UBERON:0002419 ! skin gland
intersection_of: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0003606
name: limb long bone
def: "A long bone that is part of a limb [Obol]." [OBOL:automatic]
synonym: "long bone of limb" EXACT [OBOL:automatic]
xref: MA:0000298
is_a: UBERON:0002428 ! implied link automatically realized ! limb bone
is_a: UBERON:0002495 ! implied link automatically realized ! long bone
relationship: part_of UBERON:0002101
intersection_of: UBERON:0002495 ! long bone
intersection_of: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003607
name: forelimb long bone
def: "A long bone that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb long bone" EXACT [OBOL:automatic]
synonym: "fore limb long bone" EXACT [OBOL:automatic]
synonym: "long bone of anteriormost limb" EXACT [OBOL:automatic]
synonym: "long bone of fore limb" EXACT [OBOL:automatic]
synonym: "long bone of forelimb" EXACT [OBOL:automatic]
synonym: "long bone of superior member" EXACT [OBOL:automatic]
synonym: "long bone of upper extremity" EXACT [OBOL:automatic]
synonym: "superior member long bone" EXACT [OBOL:automatic]
synonym: "upper extremity long bone" EXACT [OBOL:automatic]
xref: MA:0000299
is_a: UBERON:0003606 ! implied link automatically realized ! limb long bone
relationship: part_of UBERON:0002102
intersection_of: UBERON:0002495 ! long bone
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003608
name: hindlimb long bone
def: "A long bone that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "hind limb long bone" EXACT [OBOL:automatic]
synonym: "inferior member long bone" EXACT [OBOL:automatic]
synonym: "long bone of hind limb" EXACT [OBOL:automatic]
synonym: "long bone of hindlimb" EXACT [OBOL:automatic]
synonym: "long bone of inferior member" EXACT [OBOL:automatic]
synonym: "long bone of lower extremity" EXACT [OBOL:automatic]
synonym: "lower extremity long bone" EXACT [OBOL:automatic]
xref: MA:0000300
is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone
is_a: UBERON:0003606 ! implied link automatically realized ! limb long bone
relationship: part_of UBERON:0002103
intersection_of: UBERON:0002495 ! long bone
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003609
name: aorta elastic tissue
def: "the dense connective tissue which contains predominantly elastic fibers and is found in the tunica media of the aorta wall." [MP:0009862]
synonym: "adult aorta elastic connective tissue" EXACT [OBOL:automatic]
synonym: "adult aorta elastic tissue" EXACT [OBOL:automatic]
synonym: "adult aorta textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "aorta elastic connective tissue" EXACT [OBOL:automatic]
synonym: "aorta textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "dorsal aorta elastic connective tissue" EXACT [OBOL:automatic]
synonym: "dorsal aorta elastic tissue" EXACT [OBOL:automatic]
synonym: "dorsal aorta textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of adult aorta" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of aorta" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of dorsal aorta" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "elastic tissue of adult aorta" EXACT [OBOL:automatic]
synonym: "elastic tissue of aorta" EXACT [OBOL:automatic]
synonym: "elastic tissue of dorsal aorta" EXACT [OBOL:automatic]
synonym: "elastic tissue of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of adult aorta" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of aorta" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of dorsal aorta" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree elastic connective tissue" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree elastic tissue" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree textus connectivus elasticus" EXACT [OBOL:automatic]
xref: MA:0002859
is_a: UBERON:0003614 ! implied link automatically realized ! blood vessel elastic tissue
relationship: part_of UBERON:0000947
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0000947 ! aorta
[Term]
id: UBERON:0003610
name: heart elastic tissue
def: "the type of heart connective tissue found in the endocardial layer that consists mainly of elastic fibers." [MP:0009863]
synonym: "elastic connective tissue of heart" EXACT [OBOL:automatic]
synonym: "elastic tissue of heart" EXACT [OBOL:automatic]
synonym: "heart elastic connective tissue" EXACT [OBOL:automatic]
synonym: "heart textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of heart" EXACT [OBOL:automatic]
xref: MA:0002858
is_a: UBERON:0003613 ! implied link automatically realized ! cardiovascular system elastic tissue
relationship: part_of UBERON:0000948
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0003611
name: respiratory system elastic tissue
def: "An elastic tissue that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius elastic connective tissue" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius elastic tissue" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of respiratory system" EXACT [OBOL:automatic]
synonym: "elastic tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "elastic tissue of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system elastic connective tissue" EXACT [OBOL:automatic]
synonym: "respiratory system textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001820
is_a: UBERON:0002521 ! implied link automatically realized ! elastic tissue
is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue
relationship: part_of UBERON:0001004
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003613
name: cardiovascular system elastic tissue
def: "An elastic tissue that is part of a circulatory system [Obol]." [OBOL:automatic]
synonym: "cardiovascular system elastic connective tissue" EXACT [OBOL:automatic]
synonym: "cardiovascular system textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "circulatory system elastic connective tissue" EXACT [OBOL:automatic]
synonym: "circulatory system elastic tissue" EXACT [OBOL:automatic]
synonym: "circulatory system textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of cardiovascular system" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of circulatory system" EXACT [OBOL:automatic]
synonym: "elastic tissue of cardiovascular system" EXACT [OBOL:automatic]
synonym: "elastic tissue of circulatory system" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of cardiovascular system" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of circulatory system" EXACT [OBOL:automatic]
xref: MA:0002857
is_a: UBERON:0002521 ! implied link automatically realized ! elastic tissue
relationship: part_of UBERON:0001009
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0003614
name: blood vessel elastic tissue
def: "An elastic tissue that is part of a blood vessel [Obol]." [OBOL:automatic]
synonym: "blood vessel elastic connective tissue" EXACT [OBOL:automatic]
synonym: "blood vessel textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of blood vessel" EXACT [OBOL:automatic]
synonym: "elastic tissue of blood vessel" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of blood vessel" EXACT [OBOL:automatic]
xref: MA:0002856
is_a: UBERON:0003613 ! implied link automatically realized ! cardiovascular system elastic tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001981
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0003615
name: lung elastic tissue
def: "An elastic tissue that is part of a lung [Obol]." [OBOL:automatic]
synonym: "elastic connective tissue of lung" EXACT [OBOL:automatic]
synonym: "elastic tissue of lung" EXACT [OBOL:automatic]
synonym: "lung elastic connective tissue" EXACT [OBOL:automatic]
synonym: "lung textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of lung" EXACT [OBOL:automatic]
xref: MA:0002860
is_a: UBERON:0000114 ! implied link automatically realized ! lung connective tissue
is_a: UBERON:0003611 ! implied link automatically realized ! respiratory system elastic tissue
relationship: part_of UBERON:0002048
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0003616
name: bronchus elastic tissue
def: "An elastic tissue that is part of a bronchus [Obol]." [OBOL:automatic]
synonym: "bronchi elastic connective tissue" EXACT [OBOL:automatic]
synonym: "bronchi elastic tissue" EXACT [OBOL:automatic]
synonym: "bronchi textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "bronchial trunk elastic connective tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk elastic tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "bronchus elastic connective tissue" EXACT [OBOL:automatic]
synonym: "bronchus textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of bronchi" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of bronchus" EXACT [OBOL:automatic]
synonym: "elastic tissue of bronchi" EXACT [OBOL:automatic]
synonym: "elastic tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "elastic tissue of bronchus" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of bronchi" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of bronchial trunk" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of bronchus" EXACT [OBOL:automatic]
xref: MA:0001838
xref: ncithesaurus:Bronchus_Elastic_Tissue
is_a: UBERON:0003592 ! implied link automatically realized ! bronchus connective tissue
is_a: UBERON:0003611 ! implied link automatically realized ! respiratory system elastic tissue
relationship: part_of UBERON:0002185
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0003617
name: trachea elastic tissue
def: "An elastic tissue that is part of a trachea [Obol]." [OBOL:automatic]
synonym: "cartilaginous trachea elastic connective tissue" EXACT [OBOL:automatic]
synonym: "cartilaginous trachea elastic tissue" EXACT [OBOL:automatic]
synonym: "cartilaginous trachea textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of cartilaginous trachea" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of vertebrate trachea" EXACT [OBOL:automatic]
synonym: "elastic connective tissue of windpipe" EXACT [OBOL:automatic]
synonym: "elastic tissue of cartilaginous trachea" EXACT [OBOL:automatic]
synonym: "elastic tissue of vertebrate trachea" EXACT [OBOL:automatic]
synonym: "elastic tissue of windpipe" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of cartilaginous trachea" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of vertebrate trachea" EXACT [OBOL:automatic]
synonym: "textus connectivus elasticus of windpipe" EXACT [OBOL:automatic]
synonym: "vertebrate trachea elastic connective tissue" EXACT [OBOL:automatic]
synonym: "vertebrate trachea elastic tissue" EXACT [OBOL:automatic]
synonym: "vertebrate trachea textus connectivus elasticus" EXACT [OBOL:automatic]
synonym: "windpipe elastic connective tissue" EXACT [OBOL:automatic]
synonym: "windpipe elastic tissue" EXACT [OBOL:automatic]
synonym: "windpipe textus connectivus elasticus" EXACT [OBOL:automatic]
xref: MA:0001861
is_a: UBERON:0003571 ! implied link automatically realized ! trachea connective tissue
is_a: UBERON:0003611 ! implied link automatically realized ! respiratory system elastic tissue
relationship: part_of UBERON:0003126
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0003126 ! trachea
[Term]
id: UBERON:0003618
name: aorta tunica media
def: "the middle layer of the aorta wall, containing the smooth muscle layer and elastic fibers." [MP:0009873]
synonym: "adult aorta tunica media" EXACT [OBOL:automatic]
synonym: "dorsal aorta tunica media" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree tunica media" EXACT [OBOL:automatic]
synonym: "tunica media of adult aorta" EXACT [OBOL:automatic]
synonym: "tunica media of aorta" EXACT [OBOL:automatic]
synonym: "tunica media of dorsal aorta" EXACT [OBOL:automatic]
synonym: "tunica media of trunk of aortic tree" EXACT [OBOL:automatic]
xref: FMA:74433
xref: MA:0002903
is_a: UBERON:0002522 ! implied link automatically realized ! tunica media
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0000947
intersection_of: UBERON:0002522 ! tunica media
intersection_of: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0004663 ! aorta wall
[Term]
id: UBERON:0003619
name: aorta tunica intima
def: "the innermost layer of the aorta, containing the endothelium and an inner elastic membrane." [MP:0009872]
synonym: "adult aorta tunica intima" EXACT [OBOL:automatic]
synonym: "dorsal aorta tunica intima" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree tunica intima" EXACT [OBOL:automatic]
synonym: "tunica intima of adult aorta" EXACT [OBOL:automatic]
synonym: "tunica intima of aorta" EXACT [OBOL:automatic]
synonym: "tunica intima of dorsal aorta" EXACT [OBOL:automatic]
synonym: "tunica intima of trunk of aortic tree" EXACT [OBOL:automatic]
xref: FMA:74419
xref: MA:0002904
is_a: UBERON:0005740 ! implied link automatically realized ! tunica intima of artery
relationship: part_of UBERON:0000947
intersection_of: UBERON:0002523 ! tunica intima
intersection_of: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0004663 ! aorta wall
[Term]
id: UBERON:0003620
name: hand digit 1 phalanx
def: "A phalanx that is part of a hand digit 1 [Obol]." [OBOL:automatic]
synonym: "digit long bone of first digit of hand" EXACT [OBOL:automatic]
synonym: "digit long bone of hand digit 1" EXACT [OBOL:automatic]
synonym: "digit long bone of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic]
synonym: "digit long bone of thumb" EXACT [OBOL:automatic]
synonym: "first digit of hand digit long bone" EXACT [OBOL:automatic]
synonym: "first digit of hand long bone of digit" EXACT [OBOL:automatic]
synonym: "first digit of hand phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 1 digit long bone" EXACT [OBOL:automatic]
synonym: "hand digit 1 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of first digit of hand" EXACT [OBOL:automatic]
synonym: "long bone of digit of hand digit 1" EXACT [OBOL:automatic]
synonym: "long bone of digit of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic]
synonym: "long bone of digit of thumb" EXACT [OBOL:automatic]
synonym: "phalanx of first digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of hand digit 1" EXACT [OBOL:automatic]
synonym: "phalanx of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic]
synonym: "phalanx of thumb" EXACT [OBOL:automatic]
synonym: "Pollex ; Digitus primus [ I ] digit long bone" EXACT [OBOL:automatic]
synonym: "Pollex ; Digitus primus [ I ] long bone of digit" EXACT [OBOL:automatic]
synonym: "Pollex ; Digitus primus [ I ] phalanx" EXACT [OBOL:automatic]
synonym: "thumb digit long bone" EXACT [OBOL:automatic]
synonym: "thumb long bone of digit" EXACT [OBOL:automatic]
synonym: "thumb phalanx" EXACT [OBOL:automatic]
xref: FMA:35477
xref: MA:0001389
xref: ncithesaurus:Hand_Digit_1_Phalanx
is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger
relationship: part_of UBERON:0001463
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0001463 ! hand digit 1
[Term]
id: UBERON:0003622
name: hand digit 2
def: "2nd digit of the hand in mouse and human and homologs." [Wikipedia:Index_finger]
comment: comment: This class represents all instances of the 2nd digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
synonym: "2nd digit of hand" EXACT []
synonym: "2nd finger" EXACT []
synonym: "index finger" NARROW []
synonym: "second finger" EXACT []
xref: EHDAA2:0000517
xref: FMA:24946
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d5/Index_finger.JPG/200px-Index_finger.JPG
xref: MA:0000455
xref: ncithesaurus:Hand_Digit_2
is_a: UBERON:0002389 ! finger
is_a: UBERON:0006049 ! digit 2
[Term]
id: UBERON:0003623
name: hand digit 3
def: "3rd digit of the hand in mouse and human and homologs." [Wikipedia:Middle_finger]
comment: comment: This class represents all instances of the 3rd digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
synonym: "3rd digit of hand" EXACT []
synonym: "3rd finger" EXACT []
synonym: "middle finger" NARROW []
synonym: "third finger" EXACT []
xref: EHDAA2:0000523
xref: FMA:24947
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fd/Middle_finger.jpg/200px-Middle_finger.jpg
xref: MA:0000456
xref: ncithesaurus:Hand_Digit_3
is_a: UBERON:0002389 ! finger
is_a: UBERON:0006050 ! digit 3
[Term]
id: UBERON:0003624
name: hand digit 4
def: "4th digit of the hand in mouse and human and homologs." [Wikipedia:Ring_finger]
comment: comment: This class represents all instances of the 4th digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
synonym: "4th digit of hand" EXACT []
synonym: "4th finger" EXACT []
synonym: "fourth finger" EXACT []
synonym: "ring finger" NARROW []
xref: EHDAA2:0000529
xref: FMA:24948
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/14/Ring_finger.JPG/200px-Ring_finger.JPG
xref: MA:0000457
xref: ncithesaurus:Hand_Digit_4
is_a: UBERON:0002389 ! finger
is_a: UBERON:0006051 ! digit 4
[Term]
id: UBERON:0003625
name: hand digit 5
def: "5th digit of the hand in mouse and human and homologs." [Wikipedia:Little_finger]
comment: comment: This class represents all instances of the 5th digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
synonym: "5th digit of hand" EXACT []
synonym: "5th finger" EXACT []
synonym: "fifth finger" EXACT []
synonym: "little finger" NARROW []
xref: EHDAA2:0000535
xref: FMA:24949
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ed/Pink.jpg/200px-Pink.jpg
xref: MA:0000458
xref: ncithesaurus:Hand_Digit_5
is_a: UBERON:0002389 ! finger
is_a: UBERON:0006052 ! digit 5
[Term]
id: UBERON:0003631
name: foot digit 1
def: "1st digit of the foot in mouse and human and homologs." [Wikipedia:Big_toe]
synonym: "big toe" NARROW []
synonym: "hallux" EXACT []
xref: BTO:0002349
xref: EMAPA:17460
xref: FMA:25047
xref: GAID:45
xref: MA:0000465
xref: ncithesaurus:Foot_Digit_1
is_a: UBERON:0001466 ! toe
is_a: UBERON:0006048 ! digit 1
[Term]
id: UBERON:0003632
name: foot digit 2
def: "2nd digit of the foot in mouse and human and homologs." [UBERON:cjm]
synonym: "2nd toe" EXACT []
xref: EHDAA2:0002042
xref: FMA:25048
xref: MA:0000466
xref: ncithesaurus:Foot_Digit_2
is_a: UBERON:0001466 ! toe
is_a: UBERON:0006049 ! digit 2
[Term]
id: UBERON:0003633
name: foot digit 3
def: "3rd digit of the foot in mouse and human and homologs." [UBERON:cjm]
synonym: "3rd toe" EXACT []
xref: EHDAA2:0002047
xref: FMA:25051
xref: MA:0000467
xref: ncithesaurus:Foot_Digit_3
is_a: UBERON:0001466 ! toe
is_a: UBERON:0006050 ! digit 3
[Term]
id: UBERON:0003634
name: foot digit 4
def: "4th digit of the foot in mouse and human and homologs." [UBERON:cjm]
synonym: "4th toe" EXACT []
xref: EHDAA2:0002052
xref: FMA:25052
xref: MA:0000468
xref: ncithesaurus:Foot_Digit_4
is_a: UBERON:0001466 ! toe
is_a: UBERON:0006051 ! digit 4
[Term]
id: UBERON:0003635
name: foot digit 5
def: "5th digit of the foot in mouse and human and homologs." [UBERON:cjm, Wikipedia:Fifth_toe]
synonym: "5th toe" EXACT []
synonym: "little toe" NARROW []
xref: EHDAA2:0002057
xref: FMA:25053
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray291.png/200px-Gray291.png
xref: MA:0000469
xref: ncithesaurus:Foot_Digit_5
is_a: UBERON:0001466 ! toe
is_a: UBERON:0006052 ! digit 5
[Term]
id: UBERON:0003636
name: hand digit 2 phalanx
def: "A phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic]
synonym: "2 nd digit of hand digit long bone" EXACT [OBOL:automatic]
synonym: "2 nd digit of hand long bone of digit" EXACT [OBOL:automatic]
synonym: "2 nd digit of hand phalanx" EXACT [OBOL:automatic]
synonym: "2 nd finger digit long bone" EXACT [OBOL:automatic]
synonym: "2 nd finger long bone of digit" EXACT [OBOL:automatic]
synonym: "2 nd finger phalanx" EXACT [OBOL:automatic]
synonym: "digit long bone of 2 nd digit of hand" EXACT [OBOL:automatic]
synonym: "digit long bone of 2 nd finger" EXACT [OBOL:automatic]
synonym: "digit long bone of hand digit 2" EXACT [OBOL:automatic]
synonym: "digit long bone of second finger" EXACT [OBOL:automatic]
synonym: "hand digit 2 digit long bone" EXACT [OBOL:automatic]
synonym: "hand digit 2 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of 2 nd digit of hand" EXACT [OBOL:automatic]
synonym: "long bone of digit of 2 nd finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of hand digit 2" EXACT [OBOL:automatic]
synonym: "long bone of digit of second finger" EXACT [OBOL:automatic]
synonym: "phalanx of 2 nd digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of 2 nd finger" EXACT [OBOL:automatic]
synonym: "phalanx of hand digit 2" EXACT [OBOL:automatic]
synonym: "phalanx of second finger" EXACT [OBOL:automatic]
synonym: "second finger digit long bone" EXACT [OBOL:automatic]
synonym: "second finger long bone of digit" EXACT [OBOL:automatic]
synonym: "second finger phalanx" EXACT [OBOL:automatic]
xref: FMA:35480
xref: MA:0001390
xref: ncithesaurus:Hand_Digit_2_Phalanx
is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger
relationship: part_of UBERON:0003622
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003622 ! hand digit 2
[Term]
id: UBERON:0003637
name: hand digit 3 phalanx
def: "A phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic]
synonym: "3 rd digit of hand digit long bone" EXACT [OBOL:automatic]
synonym: "3 rd digit of hand long bone of digit" EXACT [OBOL:automatic]
synonym: "3 rd digit of hand phalanx" EXACT [OBOL:automatic]
synonym: "3 rd finger digit long bone" EXACT [OBOL:automatic]
synonym: "3 rd finger long bone of digit" EXACT [OBOL:automatic]
synonym: "3 rd finger phalanx" EXACT [OBOL:automatic]
synonym: "digit long bone of 3 rd digit of hand" EXACT [OBOL:automatic]
synonym: "digit long bone of 3 rd finger" EXACT [OBOL:automatic]
synonym: "digit long bone of hand digit 3" EXACT [OBOL:automatic]
synonym: "digit long bone of third finger" EXACT [OBOL:automatic]
synonym: "hand digit 3 digit long bone" EXACT [OBOL:automatic]
synonym: "hand digit 3 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of 3 rd digit of hand" EXACT [OBOL:automatic]
synonym: "long bone of digit of 3 rd finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of hand digit 3" EXACT [OBOL:automatic]
synonym: "long bone of digit of third finger" EXACT [OBOL:automatic]
synonym: "phalanx of 3 rd digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of 3 rd finger" EXACT [OBOL:automatic]
synonym: "phalanx of hand digit 3" EXACT [OBOL:automatic]
synonym: "phalanx of third finger" EXACT [OBOL:automatic]
synonym: "third finger digit long bone" EXACT [OBOL:automatic]
synonym: "third finger long bone of digit" EXACT [OBOL:automatic]
synonym: "third finger phalanx" EXACT [OBOL:automatic]
xref: FMA:35483
xref: MA:0001391
xref: ncithesaurus:Hand_Digit_3_Phalanx
is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger
relationship: part_of UBERON:0003623
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003623 ! hand digit 3
[Term]
id: UBERON:0003638
name: hand digit 4 phalanx
def: "A phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic]
synonym: "4 th digit of hand digit long bone" EXACT [OBOL:automatic]
synonym: "4 th digit of hand long bone of digit" EXACT [OBOL:automatic]
synonym: "4 th digit of hand phalanx" EXACT [OBOL:automatic]
synonym: "4 th finger digit long bone" EXACT [OBOL:automatic]
synonym: "4 th finger long bone of digit" EXACT [OBOL:automatic]
synonym: "4 th finger phalanx" EXACT [OBOL:automatic]
synonym: "digit long bone of 4 th digit of hand" EXACT [OBOL:automatic]
synonym: "digit long bone of 4 th finger" EXACT [OBOL:automatic]
synonym: "digit long bone of fourth finger" EXACT [OBOL:automatic]
synonym: "digit long bone of hand digit 4" EXACT [OBOL:automatic]
synonym: "fourth finger digit long bone" EXACT [OBOL:automatic]
synonym: "fourth finger long bone of digit" EXACT [OBOL:automatic]
synonym: "fourth finger phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 4 digit long bone" EXACT [OBOL:automatic]
synonym: "hand digit 4 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of 4 th digit of hand" EXACT [OBOL:automatic]
synonym: "long bone of digit of 4 th finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of fourth finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of hand digit 4" EXACT [OBOL:automatic]
synonym: "phalanx of 4 th digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of 4 th finger" EXACT [OBOL:automatic]
synonym: "phalanx of fourth finger" EXACT [OBOL:automatic]
synonym: "phalanx of hand digit 4" EXACT [OBOL:automatic]
xref: FMA:35486
xref: MA:0001392
xref: ncithesaurus:Hand_Digit_4_Phalanx
is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger
relationship: part_of UBERON:0003624
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003624 ! hand digit 4
[Term]
id: UBERON:0003639
name: hand digit 5 phalanx
def: "A phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic]
synonym: "5 th digit of hand digit long bone" EXACT [OBOL:automatic]
synonym: "5 th digit of hand long bone of digit" EXACT [OBOL:automatic]
synonym: "5 th digit of hand phalanx" EXACT [OBOL:automatic]
synonym: "5 th finger digit long bone" EXACT [OBOL:automatic]
synonym: "5 th finger long bone of digit" EXACT [OBOL:automatic]
synonym: "5 th finger phalanx" EXACT [OBOL:automatic]
synonym: "digit long bone of 5 th digit of hand" EXACT [OBOL:automatic]
synonym: "digit long bone of 5 th finger" EXACT [OBOL:automatic]
synonym: "digit long bone of fifth finger" EXACT [OBOL:automatic]
synonym: "digit long bone of hand digit 5" EXACT [OBOL:automatic]
synonym: "fifth finger digit long bone" EXACT [OBOL:automatic]
synonym: "fifth finger long bone of digit" EXACT [OBOL:automatic]
synonym: "fifth finger phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 5 digit long bone" EXACT [OBOL:automatic]
synonym: "hand digit 5 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of 5 th digit of hand" EXACT [OBOL:automatic]
synonym: "long bone of digit of 5 th finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of fifth finger" EXACT [OBOL:automatic]
synonym: "long bone of digit of hand digit 5" EXACT [OBOL:automatic]
synonym: "phalanx of 5 th digit of hand" EXACT [OBOL:automatic]
synonym: "phalanx of 5 th finger" EXACT [OBOL:automatic]
synonym: "phalanx of fifth finger" EXACT [OBOL:automatic]
synonym: "phalanx of hand digit 5" EXACT [OBOL:automatic]
xref: FMA:35489
xref: MA:0001393
xref: ncithesaurus:Hand_Digit_5_Phalanx
is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger
relationship: part_of UBERON:0003625
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003625 ! hand digit 5
[Term]
id: UBERON:0003640
name: foot digit 1 phalanx
def: "A phalanx that is part of a foot digit 1 [Obol]." [OBOL:automatic]
synonym: "digit long bone of foot digit 1" EXACT [OBOL:automatic]
synonym: "digit long bone of hallux" EXACT [OBOL:automatic]
synonym: "foot digit 1 digit long bone" EXACT [OBOL:automatic]
synonym: "foot digit 1 long bone of digit" EXACT [OBOL:automatic]
synonym: "hallux digit long bone" EXACT [OBOL:automatic]
synonym: "hallux long bone of digit" EXACT [OBOL:automatic]
synonym: "hallux phalanx" EXACT [OBOL:automatic]
synonym: "long bone of digit of foot digit 1" EXACT [OBOL:automatic]
synonym: "long bone of digit of hallux" EXACT [OBOL:automatic]
synonym: "phalanx of foot digit 1" EXACT [OBOL:automatic]
synonym: "phalanx of hallux" EXACT [OBOL:automatic]
xref: FMA:32884
xref: MA:0001381
xref: ncithesaurus:Foot_Digit_1_Phalanx
is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe
relationship: part_of UBERON:0003631
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003631 ! foot digit 1
[Term]
id: UBERON:0003641
name: foot digit 2 phalanx
def: "A phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic]
synonym: "digit long bone of foot digit 2" EXACT [OBOL:automatic]
synonym: "foot digit 2 digit long bone" EXACT [OBOL:automatic]
synonym: "foot digit 2 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of foot digit 2" EXACT [OBOL:automatic]
synonym: "phalanx of foot digit 2" EXACT [OBOL:automatic]
xref: FMA:32899
xref: MA:0001382
xref: ncithesaurus:Foot_Digit_2_Phalanx
is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe
relationship: part_of UBERON:0003632
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003632 ! foot digit 2
[Term]
id: UBERON:0003642
name: foot digit 3 phalanx
def: "A phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic]
synonym: "digit long bone of foot digit 3" EXACT [OBOL:automatic]
synonym: "foot digit 3 digit long bone" EXACT [OBOL:automatic]
synonym: "foot digit 3 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of foot digit 3" EXACT [OBOL:automatic]
synonym: "phalanx of foot digit 3" EXACT [OBOL:automatic]
xref: FMA:32900
xref: MA:0001383
xref: ncithesaurus:Foot_Digit_3_Phalanx
is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe
relationship: part_of UBERON:0003633
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003633 ! foot digit 3
[Term]
id: UBERON:0003643
name: respiratory system arterial blood vessel
def: "An arterial blood vessel that is part of a respiratory system [Obol]." [OBOL:automatic]
xref: MA:0001800
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel
relationship: part_of UBERON:0001004
intersection_of: UBERON:0003509 ! arterial blood vessel
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003644
name: kidney arterial blood vessel
def: "An arterial blood vessel that is part of a kidney [Obol]." [OBOL:automatic]
xref: MA:0002578
is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel
is_a: UBERON:0003517 ! implied link automatically realized ! kidney blood vessel
relationship: part_of UBERON:0002113
intersection_of: UBERON:0003509 ! arterial blood vessel
intersection_of: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0003645
name: metacarpal bone of digit 1
def: "A metacarpal bone that is part of a hand digit 1 [Obol]." [OBOL:automatic]
synonym: "first digit of hand metacarpal" EXACT [OBOL:automatic]
synonym: "first digit of hand metacarpal bone" EXACT [OBOL:automatic]
synonym: "hand digit 1 metacarpal" EXACT [OBOL:automatic]
synonym: "hand digit 1 metacarpal bone" EXACT [OBOL:automatic]
synonym: "metacarpal bone of first digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal bone of hand digit 1" EXACT [OBOL:automatic]
synonym: "metacarpal bone of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic]
synonym: "metacarpal bone of thumb" EXACT [OBOL:automatic]
synonym: "metacarpal of first digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal of hand digit 1" EXACT [OBOL:automatic]
synonym: "metacarpal of Pollex ; Digitus primus [ I ]" EXACT [OBOL:automatic]
synonym: "metacarpal of thumb" EXACT [OBOL:automatic]
synonym: "Pollex ; Digitus primus [ I ] metacarpal" EXACT [OBOL:automatic]
synonym: "Pollex ; Digitus primus [ I ] metacarpal bone" EXACT [OBOL:automatic]
synonym: "thumb metacarpal" EXACT [OBOL:automatic]
synonym: "thumb metacarpal bone" EXACT [OBOL:automatic]
xref: FMA:23899
xref: MA:0001364
is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone
is_a: UBERON:0004249 ! implied link automatically realized ! hand digit bone
relationship: part_of UBERON:0001463
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: part_of UBERON:0001463 ! hand digit 1
[Term]
id: UBERON:0003646
name: metacarpal bone of digit 2
def: "A metacarpal bone that is part of a hand digit 2 [Obol]." [OBOL:automatic]
synonym: "2 nd digit of hand metacarpal" EXACT [OBOL:automatic]
synonym: "2 nd digit of hand metacarpal bone" EXACT [OBOL:automatic]
synonym: "2 nd finger metacarpal" EXACT [OBOL:automatic]
synonym: "2 nd finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "hand digit 2 metacarpal" EXACT [OBOL:automatic]
synonym: "hand digit 2 metacarpal bone" EXACT [OBOL:automatic]
synonym: "metacarpal bone of 2 nd digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal bone of 2 nd finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of hand digit 2" EXACT [OBOL:automatic]
synonym: "metacarpal bone of second finger" EXACT [OBOL:automatic]
synonym: "metacarpal of 2 nd digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal of 2 nd finger" EXACT [OBOL:automatic]
synonym: "metacarpal of hand digit 2" EXACT [OBOL:automatic]
synonym: "metacarpal of second finger" EXACT [OBOL:automatic]
synonym: "second finger metacarpal" EXACT [OBOL:automatic]
synonym: "second finger metacarpal bone" EXACT [OBOL:automatic]
xref: FMA:23900
xref: MA:0001365
is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone
is_a: UBERON:0004249 ! implied link automatically realized ! hand digit bone
relationship: part_of UBERON:0003622
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: part_of UBERON:0003622 ! hand digit 2
[Term]
id: UBERON:0003647
name: metacarpal bone of digit 3
def: "A metacarpal bone that is part of a hand digit 3 [Obol]." [OBOL:automatic]
synonym: "3 rd digit of hand metacarpal" EXACT [OBOL:automatic]
synonym: "3 rd digit of hand metacarpal bone" EXACT [OBOL:automatic]
synonym: "3 rd finger metacarpal" EXACT [OBOL:automatic]
synonym: "3 rd finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "hand digit 3 metacarpal" EXACT [OBOL:automatic]
synonym: "hand digit 3 metacarpal bone" EXACT [OBOL:automatic]
synonym: "metacarpal bone of 3 rd digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal bone of 3 rd finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of hand digit 3" EXACT [OBOL:automatic]
synonym: "metacarpal bone of third finger" EXACT [OBOL:automatic]
synonym: "metacarpal of 3 rd digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal of 3 rd finger" EXACT [OBOL:automatic]
synonym: "metacarpal of hand digit 3" EXACT [OBOL:automatic]
synonym: "metacarpal of third finger" EXACT [OBOL:automatic]
synonym: "third finger metacarpal" EXACT [OBOL:automatic]
synonym: "third finger metacarpal bone" EXACT [OBOL:automatic]
xref: FMA:23901
xref: MA:0001366
is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone
is_a: UBERON:0004249 ! implied link automatically realized ! hand digit bone
relationship: part_of UBERON:0003623
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: part_of UBERON:0003623 ! hand digit 3
[Term]
id: UBERON:0003648
name: metacarpal bone of digit 4
def: "A metacarpal bone that is part of a hand digit 4 [Obol]." [OBOL:automatic]
synonym: "4 th digit of hand metacarpal" EXACT [OBOL:automatic]
synonym: "4 th digit of hand metacarpal bone" EXACT [OBOL:automatic]
synonym: "4 th finger metacarpal" EXACT [OBOL:automatic]
synonym: "4 th finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "fourth finger metacarpal" EXACT [OBOL:automatic]
synonym: "fourth finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "hand digit 4 metacarpal" EXACT [OBOL:automatic]
synonym: "hand digit 4 metacarpal bone" EXACT [OBOL:automatic]
synonym: "metacarpal bone of 4 th digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal bone of 4 th finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of fourth finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of hand digit 4" EXACT [OBOL:automatic]
synonym: "metacarpal of 4 th digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal of 4 th finger" EXACT [OBOL:automatic]
synonym: "metacarpal of fourth finger" EXACT [OBOL:automatic]
synonym: "metacarpal of hand digit 4" EXACT [OBOL:automatic]
xref: FMA:23902
xref: MA:0001367
is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone
is_a: UBERON:0004249 ! implied link automatically realized ! hand digit bone
relationship: part_of UBERON:0003624
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: part_of UBERON:0003624 ! hand digit 4
[Term]
id: UBERON:0003649
name: metacarpal bone of digit 5
def: "A metacarpal bone that is part of a hand digit 5 [Obol]." [OBOL:automatic]
synonym: "5 th digit of hand metacarpal" EXACT [OBOL:automatic]
synonym: "5 th digit of hand metacarpal bone" EXACT [OBOL:automatic]
synonym: "5 th finger metacarpal" EXACT [OBOL:automatic]
synonym: "5 th finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "fifth finger metacarpal" EXACT [OBOL:automatic]
synonym: "fifth finger metacarpal bone" EXACT [OBOL:automatic]
synonym: "hand digit 5 metacarpal" EXACT [OBOL:automatic]
synonym: "hand digit 5 metacarpal bone" EXACT [OBOL:automatic]
synonym: "metacarpal bone of 5 th digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal bone of 5 th finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of fifth finger" EXACT [OBOL:automatic]
synonym: "metacarpal bone of hand digit 5" EXACT [OBOL:automatic]
synonym: "metacarpal of 5 th digit of hand" EXACT [OBOL:automatic]
synonym: "metacarpal of 5 th finger" EXACT [OBOL:automatic]
synonym: "metacarpal of fifth finger" EXACT [OBOL:automatic]
synonym: "metacarpal of hand digit 5" EXACT [OBOL:automatic]
xref: FMA:23903
xref: MA:0001368
is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone
is_a: UBERON:0004249 ! implied link automatically realized ! hand digit bone
relationship: part_of UBERON:0003625
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: part_of UBERON:0003625 ! hand digit 5
[Term]
id: UBERON:0003650
name: metatarsal bone of digit 1
def: "A metatarsal bone that is part of a foot digit 1 [Obol]." [OBOL:automatic]
synonym: "foot digit 1 metatarsal bone" EXACT [OBOL:automatic]
synonym: "hallux metatarsal bone" EXACT [OBOL:automatic]
synonym: "metatarsal bone of foot digit 1" EXACT [OBOL:automatic]
synonym: "metatarsal bone of hallux" EXACT [OBOL:automatic]
xref: FMA:24502
xref: MA:0001369
is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone
is_a: UBERON:0004248 ! implied link automatically realized ! foot digit bone
relationship: part_of UBERON:0003631
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: part_of UBERON:0003631 ! foot digit 1
[Term]
id: UBERON:0003651
name: metatarsal bone of digit 2
def: "A metatarsal bone that is part of a foot digit 2 [Obol]." [OBOL:automatic]
synonym: "foot digit 2 metatarsal bone" EXACT [OBOL:automatic]
synonym: "metatarsal bone of foot digit 2" EXACT [OBOL:automatic]
xref: FMA:24503
xref: MA:0001370
is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone
is_a: UBERON:0004248 ! implied link automatically realized ! foot digit bone
relationship: part_of UBERON:0003632
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: part_of UBERON:0003632 ! foot digit 2
[Term]
id: UBERON:0003652
name: metatarsal bone of digit 3
def: "A metatarsal bone that is part of a foot digit 3 [Obol]." [OBOL:automatic]
synonym: "foot digit 3 metatarsal bone" EXACT [OBOL:automatic]
synonym: "metatarsal bone of foot digit 3" EXACT [OBOL:automatic]
xref: FMA:24504
xref: MA:0001371
is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone
is_a: UBERON:0004248 ! implied link automatically realized ! foot digit bone
relationship: part_of UBERON:0003633
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: part_of UBERON:0003633 ! foot digit 3
[Term]
id: UBERON:0003653
name: metatarsal bone of digit 4
def: "A metatarsal bone that is part of a foot digit 4 [Obol]." [OBOL:automatic]
synonym: "foot digit 4 metatarsal bone" EXACT [OBOL:automatic]
synonym: "metatarsal bone of foot digit 4" EXACT [OBOL:automatic]
xref: FMA:24505
xref: MA:0001372
is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone
is_a: UBERON:0004248 ! implied link automatically realized ! foot digit bone
relationship: part_of UBERON:0003634
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: part_of UBERON:0003634 ! foot digit 4
[Term]
id: UBERON:0003654
name: metatarsal bone of digit 5
def: "A metatarsal bone that is part of a foot digit 5 [Obol]." [OBOL:automatic]
synonym: "foot digit 5 metatarsal bone" EXACT [OBOL:automatic]
synonym: "metatarsal bone of foot digit 5" EXACT [OBOL:automatic]
xref: FMA:24506
xref: MA:0001373
is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone
is_a: UBERON:0004248 ! implied link automatically realized ! foot digit bone
relationship: part_of UBERON:0003635
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: part_of UBERON:0003635 ! foot digit 5
[Term]
id: UBERON:0003655
name: molar tooth
xref: FMA:55638
xref: MA:0000350
xref: ncithesaurus:Molar_Tooth
is_a: UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003656
name: carpal/tarsal bone
def: "The carpus (wrist) and tarsus (ankle) of land vertebrates primitively had three rows of carpal or tarsal bones. Often some of these have become lost or fused in evolution. Three proximals. In the hand humans has all three. In the foot the middle proximal appears in 5-15% of people as an os trigonum. Centrale or os centrale, on the medial side. In humans and our closest relatives the African apes (chimpanzees and gorillas) it fuses to the scaphoid where it forms the articulation with the trapezoid bone; occasionally it stays separate. In Man's foot it is the navicular. Some early land vertebrates had more than one (up to three) os centrale per hand or foot. Distals, one per finger / toe at the base of each metacarpal or metatarsal. In mammals the 4th and 5th fuse. In the horse the 1st is lost[WP]." [Wikipedia:Carpus_and_tarsus_of_land_vertebrates]
xref: MA:0000295
is_a: UBERON:0002428 ! limb bone
[Term]
id: UBERON:0003657
name: limb joint
def: "A skeletal joint that is part of a limb [Obol]." [OBOL:automatic]
comment: see also FMA:71276
synonym: "joint of limb" EXACT []
xref: galen:LimbJoint
xref: MA:0000691
is_a: UBERON:0000982 ! implied link automatically realized ! skeletal joint
relationship: part_of UBERON:0002101
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003658
name: hip muscle
def: "A muscle organ that is part of a hip [Obol]." [OBOL:automatic]
synonym: "hip muscle organ" EXACT [OBOL:automatic]
synonym: "hip region muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of hip" EXACT [OBOL:automatic]
synonym: "muscle organ of hip region" EXACT [OBOL:automatic]
synonym: "muscle organ of regio coxae" EXACT [OBOL:automatic]
synonym: "regio coxae muscle organ" EXACT [OBOL:automatic]
xref: MA:0000657
is_a: UBERON:0001497 ! implied link automatically realized ! muscle of pelvic girdle
relationship: part_of UBERON:0001464
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0003659
name: foot digit muscle
def: "A muscle organ that is part of a toe [Obol]." [OBOL:automatic]
synonym: "digit of foot muscle organ" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb muscle organ" EXACT [OBOL:automatic]
synonym: "digitus pedis muscle organ" EXACT [OBOL:automatic]
synonym: "foot digit muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of digit of foot" EXACT [OBOL:automatic]
synonym: "muscle organ of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "muscle organ of digitus pedis" EXACT [OBOL:automatic]
synonym: "muscle organ of foot digit" EXACT [OBOL:automatic]
synonym: "muscle organ of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "muscle organ of toe" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit muscle organ" EXACT [OBOL:automatic]
synonym: "toe muscle organ" EXACT [OBOL:automatic]
xref: MA:0000648
is_a: UBERON:0001498 ! implied link automatically realized ! muscle of foot
relationship: part_of UBERON:0001466
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0003660
name: eyelid muscle
def: "A muscle organ that is part of a eyelid [Obol]." [OBOL:automatic]
synonym: "blepharon muscle organ" EXACT [OBOL:automatic]
synonym: "eyelid muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of blepharon" EXACT [OBOL:automatic]
synonym: "muscle organ of eyelid" EXACT [OBOL:automatic]
xref: MA:0000269
xref: ncithesaurus:Eyelid_Muscle
is_a: UBERON:0002376 ! implied link automatically realized ! muscle of head
is_a: UBERON:0004277 ! implied link automatically realized ! eye muscle
relationship: part_of UBERON:0001711
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0003661
name: limb muscle
def: "A muscle organ that is part of a limb [Obol]." [OBOL:automatic]
synonym: "limb muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of limb" EXACT [OBOL:automatic]
xref: MA:0000692
is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ
relationship: part_of UBERON:0002101
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003662
name: forelimb muscle
alt_id: UBERON:0005634
def: "A muscle organ that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb muscle organ" EXACT [OBOL:automatic]
synonym: "arm muscle system" EXACT [EHDAA2:0000141]
synonym: "fore limb muscle organ" EXACT [OBOL:automatic]
synonym: "forelimb muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of anteriormost limb" EXACT [OBOL:automatic]
synonym: "muscle organ of fore limb" EXACT [OBOL:automatic]
synonym: "muscle organ of forelimb" EXACT [OBOL:automatic]
synonym: "muscle organ of superior member" EXACT [OBOL:automatic]
synonym: "muscle organ of upper extremity" EXACT [OBOL:automatic]
synonym: "musculature of arm" RELATED PLURAL []
synonym: "musculature of the arm" RELATED PLURAL []
synonym: "superior member muscle organ" EXACT [OBOL:automatic]
synonym: "upper extremity muscle organ" EXACT [OBOL:automatic]
xref: AAO:0000204
xref: BTO:0000479
xref: EHDAA2:0000141
xref: FMA:37370
xref: MA:0000615
is_a: UBERON:0003661 ! implied link automatically realized ! limb muscle
relationship: part_of UBERON:0002102
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003663
name: hindlimb muscle
def: "A muscle organ that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "hind limb muscle organ" EXACT [OBOL:automatic]
synonym: "hindlimb muscle organ" EXACT [OBOL:automatic]
synonym: "inferior member muscle organ" EXACT [OBOL:automatic]
synonym: "lower extremity muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of hind limb" EXACT [OBOL:automatic]
synonym: "muscle organ of hindlimb" EXACT [OBOL:automatic]
synonym: "muscle organ of inferior member" EXACT [OBOL:automatic]
synonym: "muscle organ of lower extremity" EXACT [OBOL:automatic]
xref: AAO:0000222
xref: EFO:0001928
xref: MA:0000663
is_a: UBERON:0003661 ! implied link automatically realized ! limb muscle
relationship: part_of UBERON:0002103
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003664
name: hand digit muscle
def: "A muscle organ that is part of a finger [Obol]." [OBOL:automatic]
synonym: "digit of hand muscle organ" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
synonym: "digitus manus muscle organ" EXACT [OBOL:automatic]
synonym: "finger muscle organ" EXACT [OBOL:automatic]
synonym: "hand digit muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of digit of hand" EXACT [OBOL:automatic]
synonym: "muscle organ of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "muscle organ of digitus manus" EXACT [OBOL:automatic]
synonym: "muscle organ of finger" EXACT [OBOL:automatic]
synonym: "muscle organ of hand digit" EXACT [OBOL:automatic]
synonym: "muscle organ of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit muscle organ" EXACT [OBOL:automatic]
xref: MA:0000624
is_a: UBERON:0001500 ! implied link automatically realized ! muscle of hand
relationship: part_of UBERON:0002389
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0003665
name: tail muscle
def: "A muscle organ that is part of a tail [Obol]." [OBOL:automatic]
synonym: "muscle organ of post-vent region" EXACT [OBOL:automatic]
synonym: "muscle organ of tail" EXACT [OBOL:automatic]
synonym: "post-vent region muscle organ" EXACT [OBOL:automatic]
synonym: "tail muscle organ" EXACT [OBOL:automatic]
xref: BTO:0001905
xref: MA:0000699
is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ
relationship: part_of UBERON:0002415
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002415 ! tail
[Term]
id: UBERON:0003666
name: upper jaw molar
def: "A molar tooth that is part of a upper jaw [Obol]." [OBOL:automatic]
synonym: "molar tooth of palatoquadrate arch" EXACT [OBOL:automatic]
synonym: "molar tooth of upper jaw" EXACT [OBOL:automatic]
synonym: "palatoquadrate arch molar tooth" EXACT [OBOL:automatic]
synonym: "upper jaw molar tooth" EXACT [OBOL:automatic]
xref: EHDAA2:0002125
xref: MA:0001603
xref: ncithesaurus:Upper_Jaw_Molar
is_a: UBERON:0003267 ! implied link automatically realized ! tooth of upper jaw
is_a: UBERON:0003655 ! implied link automatically realized ! molar tooth
relationship: part_of UBERON:0001709
intersection_of: UBERON:0003655 ! molar tooth
intersection_of: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0003667
name: lower jaw molar
def: "A molar tooth that is part of a lower jaw [Obol]." [OBOL:automatic]
synonym: "lower jaw molar tooth" EXACT [OBOL:automatic]
synonym: "molar tooth of lower jaw" EXACT [OBOL:automatic]
synonym: "molar tooth of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch molar tooth" EXACT [OBOL:automatic]
xref: EHDAA2:0001025
xref: MA:0001602
xref: ncithesaurus:Lower_Jaw_Molar
is_a: UBERON:0003268 ! implied link automatically realized ! tooth of lower jaw
is_a: UBERON:0003655 ! implied link automatically realized ! molar tooth
relationship: part_of UBERON:0001710
intersection_of: UBERON:0003655 ! molar tooth
intersection_of: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0003668
name: synovial bursa
def: "a small fluid-filled sac lined by synovial membrane with an inner capillary layer of slimy fluid. It provides a cushion between bones and tendons and/or muscles around a joint. This helps to reduce friction between the bones and allows free movement. Bursae are filled with synovial fluid and are found around most major joints of the body." [Wikipedia:Synovial_bursa]
synonym: "bursa" EXACT [FMA:9692]
xref: FMA:9692
xref: GAID:252
xref: galen:Bursa
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Gray350.png/200px-Gray350.png
xref: ncithesaurus:Synovial_Bursa
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0003669
name: fascia lata
def: "The fascia lata is the deep fascia of the thigh. [WP,unvetted]." [Wikipedia:Fascia_lata]
xref: FMA:13902
xref: GAID:117
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e7/Gray431.png/200px-Gray431.png
xref: ncithesaurus:Fascia_Lata
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0003670
name: smegma
def: "a combination of exfoliated (shed) epithelial cells, transudated skin oils, and moisture. It occurs in both female and male mammalian genitalia[WP]." [Wikipedia:Smegma]
xref: FMA:19656
xref: GAID:1170
xref: ncithesaurus:Smegma
is_a: UBERON:0000456 ! secretion
[Term]
id: UBERON:0003671
name: anterior cruciate ligament
xref: FMA:44614
xref: GAID:122
xref: galen:AnteriorCruciateLigament
xref: ncithesaurus:Anterior_Cruciate_Ligament
xref: OpenCyc:Mx4r77KC8RuaEd2f4ADggVfexA
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003577 ! implied link automatically realized ! knee connective tissue
relationship: part_of UBERON:0001485 ! knee joint
[Term]
id: UBERON:0003672
name: dentition
synonym: "dental plate" RELATED []
synonym: "pharyngeal teeth" RELATED []
synonym: "set of teeth" EXACT [FMA:75150]
synonym: "teeth" EXACT [FMA:75150]
synonym: "teeth" RELATED []
synonym: "teeth set" EXACT [FMA:75150]
xref: AAO:0000126
xref: FMA:75150
xref: GAID:1249
xref: ncithesaurus:Dentition
xref: OpenCyc:Mx4rvVi65JwpEbGdrcN5Y29ycA
xref: TAO:0000644
xref: ZFA:0000644
is_a: UBERON:0000061 ! anatomical structure
relationship: has_part UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003673
name: ligamentum flavum
synonym: "flaval ligament" RELATED [GAID:126]
xref: FMA:13423
xref: GAID:126
xref: ncithesaurus:Ligamentum_Flavum
is_a: UBERON:0000211 ! ligament
[Term]
id: UBERON:0003674
name: cuspid
synonym: "canine teeth" RELATED [GAID:1262]
synonym: "canine tooth" RELATED [GAID:1262]
synonym: "cuspid" EXACT [FMA:55636]
xref: FMA:55636
xref: GAID:1262
is_a: UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003675
name: tooth crown
synonym: "crown" RELATED []
synonym: "tooth crown" EXACT [FMA:55623]
xref: FMA:55623
xref: GAID:1275
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003676
name: patellar ligament
synonym: "central band of tendon of quadriceps femoris" EXACT [FMA:44581]
synonym: "ligamentum patella" EXACT [FMA:44581]
xref: FMA:44581
xref: GAID:128
xref: galen:LigamentumPatellae
xref: ncithesaurus:Patellar_Ligament
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003577 ! implied link automatically realized ! knee connective tissue
relationship: part_of UBERON:0001485 ! knee joint
[Term]
id: UBERON:0003677
name: tooth root
synonym: "radix corona" EXACT [FMA:55624]
synonym: "tooth root" EXACT [FMA:55624]
xref: FMA:55624
xref: GAID:1280
is_a: UBERON:0000063 ! organ segment
relationship: attached_to UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003678
name: tooth apex
synonym: "apical foramen" RELATED [GAID:1281]
synonym: "tooth apex" EXACT [FMA:63000]
synonym: "tooth apice" RELATED [GAID:1281]
xref: FMA:63000
xref: GAID:1281
is_a: UBERON:0000015 ! anatomical boundary
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003679
name: mouth floor
synonym: "floor of mouth" EXACT [FMA:86592]
synonym: "sublingual region" RELATED [GAID:1283]
xref: FMA:86592
xref: GAID:1283
xref: ncithesaurus:Floor_of_the_Mouth
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0003680
name: posterior cruciate ligament
xref: FMA:44617
xref: GAID:129
xref: galen:PosteriorCruciateLigament
xref: ncithesaurus:Posterior_Cruciate_Ligament
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003577 ! implied link automatically realized ! knee connective tissue
relationship: part_of UBERON:0001485 ! knee joint
[Term]
id: UBERON:0003681
name: masticatory muscle
def: "any of the muscles responsible for the movement of the jaws during mastication, including the masseter, temporal, and medial and lateral pterygoid muscles." [MP:0004234]
comment: TODO
synonym: "masticatory muscles" EXACT [FMA:71437]
synonym: "masticatory muscles set" EXACT [FMA:71437]
xref: EFO:0001424
xref: FMA:74060
xref: GAID:145
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0003682
name: palatal muscle
synonym: "palatal muscle" EXACT [FMA:46726]
synonym: "palate muscle" EXACT [FMA:46726]
synonym: "palatine muscle" EXACT [FMA:46726]
xref: FMA:46726
xref: GAID:151
xref: ncithesaurus:Palatal_Muscle
is_a: UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0003683
name: rotator cuff
synonym: "musculotendinous cuff" EXACT [FMA:37018]
synonym: "rotator cuff" EXACT [FMA:37018]
xref: FMA:37018
xref: GAID:160
xref: ncithesaurus:Rotator_Cuff
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003684
name: abdominal cavity
def: "body cavity of the human body (and animal bodies) that holds the bulk of the viscera. It is located below (or inferior to) the thoracic cavity, and above the pelvic cavity. It is a part of the abdominopelvic cavity. Organs of the abdominal cavity include the stomach, liver, gallbladder, spleen, pancreas, small intestine, kidneys, and large intestine. The abdominal cavity is lined with a protective membrane termed the peritoneum. The kidneys are located in the abdominal cavity behind the peritoneum, in the retroperitoneum. The viscera are also covered, in the front, with a layer of peritoneum called the greater omentum (or omental apron)." [Wikipedia:Abdominal_cavity]
synonym: "cavitas abdominis" RELATED [GAID:17]
synonym: "cavity of abdominal compartment" EXACT [FMA:12266]
synonym: "cavity of compartment of abdomen" EXACT [FMA:12266]
synonym: "space of abdominal compartment" EXACT [FMA:12266]
xref: EFO:0000213
xref: FMA:12266
xref: GAID:17
xref: galen:AbdominalCavity
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ee/Scheme_body_cavities-en.svg/200px-Scheme_body_cavities-en.svg.png
xref: ncithesaurus:Abdominal_Cavity
xref: OpenCyc:Mx4rvZR1TJwpEbGdrcN5Y29ycA
is_a: UBERON:0002323 ! body cavity
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003685
name: cranial suture
def: "The meeting line of two primary body plates, as a rule forming a furrow-like impression. // Fibrous joint in which the articulating bones or cartilages of the skull are connected by sutural ligaments (scant amount of collagenous dense connective tissue). Examples: sagittal suture, frontal suture." [ISBN:3110148986, Wikipedia:Suture]
comment: cannot find singular in FMA, using Set class
subset: uberon_slim
synonym: "cranium suture" EXACT [OBOL:automatic]
synonym: "suture" EXACT [FMA:71385]
synonym: "suture of cranium" EXACT [OBOL:automatic]
xref: FMA:7493
xref: GAID:211
xref: MA:0001475
is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure
is_a: UBERON:0000969 ! joint connecting hardened body parts
is_a: UBERON:0002209 ! implied link automatically realized ! fibrous joint
relationship: part_of UBERON:0003128
intersection_of: UBERON:0002209 ! fibrous joint
intersection_of: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0003686
name: tooth socket
def: "Dental alveolus (plural, alveoli) are sockets in the jaws in which the roots of teeth are held in the alveolar process of maxilla with the periodontal ligament. The lay term for dental alveoli is tooth sockets. A joint that connect the roots of the teeth and the alveolus are called gomphosis (plural gomphoses). In mammals, tooth sockets are found in the maxilla and the mandible. [WP,unvetted]." [Wikipedia:Dental_alveolus]
synonym: "alveolus dentali" RELATED [GAID:217]
synonym: "alveolus dentalis" RELATED [GAID:217]
synonym: "dental alveolus" RELATED [GAID:217]
synonym: "dental alveolus" EXACT [FMA:57490]
xref: FMA:57490
xref: GAID:217
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Alveole_zahn.jpg/200px-Alveole_zahn.jpg
is_a: UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0003687
name: foramen magnum
def: "In anatomy, in the occipital bone, the foramen magnum is one of the several oval or circular apertures in the base of the skull, through which the medulla oblongata (an extension of the spinal cord) enters and exits the skull vault. Apart from the transmission of the medulla oblongata and its membranes, the foramen magnum transmits the Spinal Accessory nerve, vertebral arteries, the anterior and posterior spinal arteries, the membrana tectoria and alar ligaments. [WP,unvetted]." [Wikipedia:Foramen_magnum]
xref: FMA:75306
xref: GAID:228
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/39/Gray130.png/200px-Gray130.png
xref: ncithesaurus:Foramen_Magnum
xref: OpenCyc:Mx4rwOm-FpwpEbGdrcN5Y29ycA
is_a: UBERON:0001676 ! occipital bone
[Term]
id: UBERON:0003688
name: omentum
xref: FMA:14650
xref: GAID:23
xref: galen:Omentum
xref: ncithesaurus:Omentum
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001178 ! visceral peritoneum
[Term]
id: UBERON:0003689
name: sella turcica
def: "The sella turcica is a saddle-shaped depression in the sphenoid bone at the base of the human skull. [WP,unvetted]." [Wikipedia:Sella_turcica]
xref: FMA:54709
xref: GAID:231
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Gray145.png/200px-Gray145.png
xref: ncithesaurus:Sella_Turcica
is_a: UBERON:0001677 ! sphenoid bone
[Term]
id: UBERON:0003690
name: sacrum
def: "The sacrum is a large, triangular bone at the base of the spine and at the upper and back part of the pelvic cavity, where it is inserted like a wedge between the two hip bones. Its upper part connects with the last lumbar vertebra, and bottom part with the coccyx (tailbone). In children, it consists of usually five unfused vertebrae which begin to fuse between ages 16-18 and are usually completely fused into a single bone by age 26. It is curved upon itself and placed obliquely (that is, tilted forward). It is kyphotic — that is, concave facing forwards. The base projects forward as the sacral promontory internally, and articulates with the last lumbar vertebra to form the prominent sacrovertebral angle. The central part is curved outward towards the posterior, allowing greater room for the pelvic cavity. [WP,unvetted]." [Wikipedia:Sacrum]
synonym: "sacral bone" EXACT [FMA:16202]
synonym: "sacrum [sacral vertebrae I-V]" EXACT [FMA:16202]
xref: AAO:0000552
xref: FMA:16202
xref: GAID:241
xref: galen:Sacrum
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/ec/Gray95.png/200px-Gray95.png
xref: ncithesaurus:Sacral_Bone
xref: OpenCyc:Mx4rvmBKnJwpEbGdrcN5Y29ycA
is_a: UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0002090 ! postcranial axial skeleton
[Term]
id: UBERON:0003691
name: epidural space
synonym: "extradural space" EXACT [FMA:71228]
xref: FMA:71228
xref: GAID:243
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0003692
name: acromioclavicular joint
def: "The acromioclavicular joint, or AC joint, is a joint at the top of the shoulder. It is the junction between the acromion (part of the scapula that forms the highest point of the shoulder) and the clavicle. [WP,unvetted]." [Wikipedia:Acromioclavicular_joint]
xref: FMA:25898
xref: GAID:249
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Gray326.png/200px-Gray326.png
xref: ncithesaurus:Acromioclavicular_Joint
xref: OpenCyc:Mx4rwHhmSJwpEbGdrcN5Y29ycA
is_a: UBERON:0000982 ! skeletal joint
is_a: UBERON:0001470 ! implied link automatically realized ! glenohumeral joint
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003693
name: retroperitoneal space
def: "anatomical space in the abdominal cavity behind (retro) the peritoneum. It has no specific delineating anatomical structures. Organs are retroperitoneal if they only have peritoneum on their anterior side." [Wikipedia:Retroperitoneum]
synonym: "retroperitoneum" EXACT [FMA:15080]
xref: FMA:15080
xref: GAID:25
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f2/Gray1126.png/200px-Gray1126.png
xref: ncithesaurus:Retroperitoneum
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0003684 ! abdominal cavity
[Term]
id: UBERON:0003694
name: atlanto-axial joint
synonym: "atlanto axial joint" RELATED [GAID:250]
synonym: "atlantoaxial joint" RELATED [GAID:250]
xref: FMA:25524
xref: GAID:250
xref: ncithesaurus:Atlanto-axial_Joint
xref: OpenCyc:Mx4rwUUIHpwpEbGdrcN5Y29ycA
is_a: UBERON:0000982 ! skeletal joint
[Term]
id: UBERON:0003695
name: metacarpophalangeal joint
def: "The metacarpophalangeal joints (MCP) are of the condyloid kind, formed by the reception of the rounded heads of the metacarpal bones into shallow cavities on the proximal ends of the first phalanges, with the exception of that of the thumb, which presents more of the characters of a ginglymoid joint. Arthritis of the MCP is a distinguishing feature of Rheumatoid Arthritis, as opposed to the distal interphalangeal joint in osteoarthritis. [WP,unvetted]." [Wikipedia:Metacarpophalangeal_joint]
synonym: "metacarpal joint" EXACT [FMA:35246]
synonym: "mp joint" EXACT [FMA:35246]
xref: FMA:35246
xref: GAID:255
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/53/Gray337.png/200px-Gray337.png
xref: MA:0000453
xref: ncithesaurus:Metacarpophalangeal_Joint
xref: OpenCyc:Mx4rwNt8wJwpEbGdrcN5Y29ycA
is_a: UBERON:0002217 ! synovial joint
relationship: attached_to UBERON:0002374 ! metacarpal bone
[Term]
id: UBERON:0003696
name: metatarsophalangeal joint
synonym: "metatarsal joint" EXACT [FMA:35222]
xref: FMA:35222
xref: GAID:258
xref: ncithesaurus:Metatarsophalangeal_Joint
xref: OpenCyc:Mx4rwCtS0pwpEbGdrcN5Y29ycA
is_a: UBERON:0001487 ! joint of foot
relationship: attached_to UBERON:0001448 ! metatarsal bone
[Term]
id: UBERON:0003697
name: abdominal wall
def: "An anatomical wall that is part of an abdomen [Obol]." [OBOL:automatic]
synonym: "abdomen anatomical wall" EXACT [OBOL:automatic]
synonym: "abdomen wall" EXACT [OBOL:automatic]
synonym: "abdominal wall" EXACT [FMA:10429]
synonym: "anatomical wall of abdomen" EXACT [OBOL:automatic]
synonym: "wall of abdomen" EXACT [OBOL:automatic]
xref: FMA:10429
xref: GAID:26
is_a: UBERON:0000060 ! anatomical wall
relationship: part_of UBERON:0000916
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003698
name: subtalar joint
synonym: "subtalar joint" EXACT [FMA:35198]
synonym: "talocalcaneal joint" RELATED [GAID:260]
xref: FMA:35198
xref: GAID:260
xref: ncithesaurus:Subtalar_Joint
is_a: UBERON:0001487 ! joint of foot
is_a: UBERON:0002217 ! synovial joint
[Term]
id: UBERON:0003699
name: pubic symphysis
def: "the firm fibrocartilaginous joint in the median plane between the two opposing surfaces of the pubic bones, which are united by an interpubic disc of fibrocartilage as well as the superior and arcuate pubic ligaments." [MP:0009575, Wikipedia:Pubic_symphysis]
synonym: "pubic symphyse" RELATED [GAID:267]
synonym: "symphysis pubis" EXACT [FMA:16950]
xref: FMA:16950
xref: GAID:267
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/51/Gray321.png/200px-Gray321.png
xref: OpenCyc:Mx4rwGw9npwpEbGdrcN5Y29ycA
is_a: UBERON:0000982 ! skeletal joint
is_a: UBERON:0002216 ! symphysis
[Term]
id: UBERON:0003700
name: temporomandibular joint
def: "A joint of the jaw. There are two TMJs, one on either side, working in unison. The name is derived from the two bones which form the joint: the upper temporal bone which is part of the cranium (skull), and the lower jaw bone called the mandible. The unique feature of the TMJs is the articular disc. The disc is composed of fibrocartilagenous tissue (like the firm and flexible elastic cartilage of the ear) which is positioned between the two bones that form the joint. The TMJs are one of the only synovial joints in the human body with an articular disc, another being the sternoclavicular joint. The disc divides each joint into two. The lower joint compartment formed by the mandible and the articular disc is involved in rotational movement -- this is the initial movement of the jaw when the mouth opens. The upper joint compartment formed by the articular disk and the temporal bone is involved in translational movement -- this is the secondary gliding motion of the jaw as it is opened widely. The part of the mandible which mates to the under-surface of the disc is the condyle and the part of the temporal bone which mates to the upper surface of the disk is the glenoid (or mandibular) fossa[WP]." [Wikipedia:Temporomandibular_joint]
synonym: "articulatio temporomandibularis" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "tempero-mandibular joint" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "temperomandibular joint" EXACT [HP:0010754]
synonym: "temporalmandibular joint" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "temporomandibular" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "temporomandibular articulation" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "temporomandibular joint" RELATED [Wikipedia:Temporomandibular_joint]
synonym: "TMJ" EXACT [BTO:0003674, Wikipedia:Temporomandibular_joint]
xref: BTO:0003674
xref: FMA:54832
xref: GAID:272
xref: MA:0002899
is_a: UBERON:0000982 ! skeletal joint
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0003701
name: achilles tendon
synonym: "achilles tendon" EXACT [FMA:51061]
xref: FMA:51061
xref: GAID:277
xref: ncithesaurus:Achilles_Tendon
xref: OpenCyc:Mx4rvVjNX5wpEbGdrcN5Y29ycA
is_a: UBERON:0000043 ! tendon
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001665 ! triceps surae
[Term]
id: UBERON:0003702
name: inguinal canal
def: "The inguinal canal is a passage in the anterior (toward the front of the body) abdominal wall which in men conveys the spermatic cord and in women the round ligament. The inguinal canal is larger and more prominent in men. [WP,unvetted]." [Wikipedia:Inguinal_canal]
xref: FMA:19928
xref: GAID:28
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b4/Gray1227.png/200px-Gray1227.png
is_a: UBERON:0004111 ! anatomical conduit
[Term]
id: UBERON:0003703
name: extrahepatic bile duct
def: "the passages external to the liver for the conveyance of bile." [MP:0009498]
synonym: "bile duct extrahepatic part" RELATED [MA:0002659]
synonym: "extrahepatic biliary system" RELATED [GAID:281]
xref: FMA:14678
xref: GAID:281
xref: MA:0002659
xref: ncithesaurus:Extrahepatic_Bile_Duct
is_a: UBERON:0002394 ! bile duct
[Term]
id: UBERON:0003704
name: intrahepatic bile duct
def: "the passages within the liver for the conveyance of bile." [MP:0009497]
synonym: "bile duct intrahepatic part" EXACT [MA:0001630]
xref: FMA:15766
xref: GAID:287
xref: MA:0001630
xref: ncithesaurus:Intrahepatic_Bile_Duct
xref: ZFA:0005169
is_a: UBERON:0002394 ! bile duct
[Term]
id: UBERON:0003705
name: meckel's diverticulum
synonym: "diverticulum of meckel" EXACT [FMA:14967]
synonym: "meckel diverticulum" RELATED [GAID:317]
synonym: "meckel's diverticulum" EXACT [FMA:14967]
synonym: "meckels diverticulum" RELATED [GAID:317]
xref: FMA:14967
xref: GAID:317
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0002116 ! ileum
[Term]
id: UBERON:0003706
name: vocal cord
synonym: "true vocal cord" EXACT [FMA:55457]
synonym: "vocal cord" EXACT [FMA:55457]
synonym: "vocal fold" RELATED [GAID:344]
xref: FMA:55457
xref: GAID:344
xref: ncithesaurus:Vocal_Cord
xref: OpenCyc:Mx4rvVieepwpEbGdrcN5Y29ycA
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0003707
name: sinus of valsalva
synonym: "aortic sinus" RELATED [GAID:472]
synonym: "sinus of valsalva" EXACT [FMA:3745]
synonym: "valsalva sinus" RELATED [GAID:472]
xref: FMA:3745
xref: GAID:472
is_a: UBERON:0000947 ! aorta
relationship: part_of UBERON:0000947 ! aorta
[Term]
id: UBERON:0003708
name: carotid sinus
def: "In human anatomy, the carotid sinus is a localized dilation of the internal carotid artery at its origin, the common carotid artery bifurcation. A synonym for the carotid sinus is the carotid bulb. [WP,unvetted]." [Wikipedia:Carotid_sinus]
xref: FMA:50094
xref: GAID:482
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9c/Gray513.png/200px-Gray513.png
is_a: UBERON:0001530 ! common carotid artery
[Term]
id: UBERON:0003709
name: circle of Willis
def: "a circle of arteries that supply blood to the brain." [Wikipedia:Circle_of_Willis]
synonym: "arterial circle of willis" EXACT []
synonym: "cerebral arterial circle" RELATED [GAID:486]
synonym: "circle of willis" EXACT [FMA:50454]
synonym: "willis circle" RELATED [GAID:486]
xref: EHDAA:9758
xref: EHDAA2:0000252
xref: FMA:50454
xref: GAID:486
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2e/Circle_of_Willis_en.svg/200px-Circle_of_Willis_en.svg.png
xref: OpenCyc:Mx4rwSrCwJwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0003710
name: vasa vasorum
xref: FMA:77433
xref: GAID:526
xref: ncithesaurus:Vasa_Vasorum
is_a: UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0003711
name: brachiocephalic vein
synonym: "brachiocephalic venous tree" EXACT [FMA:4723]
synonym: "innominate vein" RELATED [GAID:529]
synonym: "innominate vein" EXACT [FMA:4723]
xref: EHDAA:9868
xref: EHDAA2:0000182
xref: FMA:4723
xref: GAID:529
xref: galen:BrachiocephalicVein
xref: ncithesaurus:Innominate_Vein
xref: OpenCyc:Mx4rvz3aUJwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0003712
name: cavernous sinus
xref: FMA:50772
xref: GAID:532
xref: ncithesaurus:Cavernous_Sinus
xref: OpenCyc:Mx4rwKAVGJwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0003713
name: splenic vein
def: "In anatomy, the splenic vein (in the past called the lienal vein) is the blood vessel that drains blood from the spleen. It joins with the superior mesenteric vein, to form the hepatic portal vein and follows a course superior to the pancreas, alongside of the similarly named artery, the splenic artery. It collects branches from the stomach and pancreas and most notably from the large intestine, which is drained by the inferior mesenteric vein and joins with splenic vein shortly before it forms the portal vein. [WP,unvetted]." [Wikipedia:Splenic_vein]
xref: FMA:14331
xref: GAID:541
xref: galen:SplenicVein
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/5b/Gray1189.png/200px-Gray1189.png
xref: ncithesaurus:Splenic_Vein
xref: OpenCyc:Mx4rwCt0eZwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0003714
name: neural tissue
def: "Portion of tissue which consists of neurons, neuroglia and vasculature. Examples: Neural tissue of brain, neural tissue of peripheral ganglion, neural tissue of nerve[FMA]." [FMA:9642]
comment: FMA definition includes vasculature
synonym: "nerve tissue" EXACT [FMA:9642]
synonym: "nervous tissue" EXACT [FMA:9642]
synonym: "portion of neural tissue" EXACT [FMA:9642]
xref: AAO:0000325
xref: AEO:0000123
xref: EHDAA2:0003123
xref: FMA:9642
xref: GAID:609
xref: ncithesaurus:Nervous_Tissue
xref: OpenCyc:Mx4rVmfYCsQ_QdeM_bFAeS8NRQ
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0000479 ! implied link automatically realized ! portion of tissue
relationship: part_of UBERON:0001016
intersection_of: UBERON:0000479 ! portion of tissue
intersection_of: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0003715
name: splanchnic nerve
def: "the major nerves supplying sympathetic innervation to the abdomen, including the greater, lesser, and lowest (or smallest) splanchnic nerves that are formed by preganglionic fibers from the spinal cord which pass through the paravertebral ganglia and then to the celiac ganglia and plexuses and the lumbar splanchnic nerves carry fibers which pass through the lumbar paravertebral ganglia to the mesenteric and hypogastric ganglia." [MP:0008318]
xref: FMA:5883
xref: GAID:800
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0003377 ! implied link automatically realized ! nerve of peripheral nervous system
relationship: part_of UBERON:0000013 ! sympathetic nervous system
[Term]
id: UBERON:0003716
name: recurrent laryngeal nerve
synonym: "inferior laryngeal nerve" RELATED [GAID:804]
xref: FMA:6246
xref: GAID:804
is_a: UBERON:0002003 ! peripheral nerve
relationship: branch_of UBERON:0001759 ! vagus nerve
[Term]
id: UBERON:0003717
name: golgi-mazzoni corpuscle
synonym: "golgi mazzoni corpuscle" RELATED [GAID:817]
synonym: "golgi-mazzoni corpuscle" EXACT [FMA:83609]
xref: FMA:83609
xref: GAID:817
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0003718
name: muscle spindle
def: "the sensory organs in muscle that are involved in the stretch reflex." [MP:0004069]
synonym: "muscle stretch receptor" RELATED [GAID:819]
synonym: "neuromuscular spindle" RELATED [GAID:819]
synonym: "neuromuscular spindle" EXACT [FMA:83607]
xref: FMA:83607
xref: GAID:819
xref: ncithesaurus:Muscle_Spindle
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0003719
name: pacinian corpuscle
def: "any of the rapidly adapting mechanoreceptors found in subcutaneous tissue beneath both hairy and glabrous skin, and which normally contain an afferent nerve fiber surrounded by a capsule with multiple concentric layers." [MP:0000988, Wikipedia:Pacinian_corpuscle]
xref: FMA:83604
xref: GAID:820
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/52/Gray935.png/200px-Gray935.png
xref: NIF_Subcellular:FMA_83604
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0003720
name: anterior cranial fossa
def: "The floor of the anterior fossa is formed by the orbital plates of the frontal, the cribriform plate of the ethmoid, and the small wings and front part of the body of the sphenoid; it is limited behind by the posterior borders of the small wings of the sphenoid and by the anterior margin of the chiasmatic groove. The lesser wings of the sphenoid separate the anterior and middle fossae." [Wikipedia:Anterior_cranial_fossa]
xref: FMA:9682
xref: GAID:83
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/81/Gray193.png/200px-Gray193.png
xref: ncithesaurus:Anterior_Fossa
is_a: UBERON:0004704 ! bone fossa
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0003721
name: lingual nerve
xref: FMA:53218
xref: GAID:835
is_a: UBERON:0001021 ! nerve
relationship: branch_of UBERON:0000375 ! mandibular nerve
[Term]
id: UBERON:0003722
name: middle cranial fossa
xref: FMA:54369
xref: GAID:84
xref: ncithesaurus:Middle_Fossa
is_a: UBERON:0004704 ! bone fossa
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0003723
name: vestibular nerve
def: "The vestibular nerve is one of the two branches of the Vestibulocochlear nerve (the cochlear nerve being the other). It goes to the semicircular canals via the vestibular ganglion. It receives positional information. Axons of the vestibular nerve synapse in the vestibular nucleus on the lateral floor and wall of the fourth ventricle in the pons and medulla. It arises from bipolar cells in the vestibular ganglion, ganglion of Scarpa, which is situated in the upper part of the outer end of the internal auditory meatus. [WP,unvetted]." [Wikipedia:Vestibular_nerve]
synonym: "scarpa ganglion" RELATED [GAID:840]
synonym: "scarpa's ganglion" RELATED [GAID:840]
synonym: "scarpas ganglion" RELATED [GAID:840]
synonym: "vestibular root of acoustic nerve" EXACT [FMA:53401]
synonym: "vestibular root of eighth cranial nerve" EXACT [FMA:53401]
synonym: "vestibulocochlear VIII nerve vestibular component" EXACT [MA:0001111]
xref: FMA:53401
xref: GAID:840
xref: HOG:0001181
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg/200px-Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg
xref: MA:0001111
xref: ncithesaurus:Vestibular_Nerve
xref: OpenCyc:Mx4rvxAWX5wpEbGdrcN5Y29ycA
is_a: UBERON:0001785 ! cranial nerve
relationship: branch_of UBERON:0001648 ! vestibulocochlear nerve
[Term]
id: UBERON:0003724
name: musculocutaneous nerve
def: "The musculocutaneous nerve arises from the lateral cord of the brachial plexus, opposite the lower border of the Pectoralis minor, its fibers being derived from C5, C6, C7. [WP,unvetted]." [Wikipedia:Musculocutaneous_nerve]
synonym: "casserio's nerve" EXACT [FMA:37064]
xref: FMA:37064
xref: GAID:844
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a7/Nerves_of_the_left_upper_extremity.gif/200px-Nerves_of_the_left_upper_extremity.gif
xref: OpenCyc:Mx4rvzp0l5wpEbGdrcN5Y29ycA
is_a: UBERON:0002003 ! peripheral nerve
[Term]
id: UBERON:0003725
name: cervical plexus
def: "The cervical plexus is a plexus of the ventral rami of the first four cervical spinal nerves which are located from C1 to C5 cervical segment in the neck. They are located laterally to the transverse processes between prevertebral muscles from the medial side and vertebral from lateral side. Here there is anastomosis with accessory nerve, hypoglossal nerve and sympathetic trunk. It is located in the neck, deep to sternocleidomastoid. Nerves formed from the cervical plexus innervate the back of the head, as well as some neck muscles. The branches of the cervical plexus emerge from the posterior triangle at the nerve point, a point which lies midway on the posterior border of the Sternocleidomastoid[WP]." [Wikipedia:Cervical_plexus]
synonym: "cervical plexus" EXACT [FMA:5904]
xref: FMA:5904
xref: GAID:847
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/20/Gray784.png/200px-Gray784.png
xref: OpenCyc:Mx4rvkEE3JwpEbGdrcN5Y29ycA
is_a: UBERON:0001813 ! somatic nerve plexus
[Term]
id: UBERON:0003726
name: thoracic nerve
synonym: "pectoral nerve" RELATED [GAID:857]
synonym: "thoracic spinal nerve" EXACT [FMA:5860]
xref: FMA:5860
xref: GAID:857
xref: OpenCyc:Mx4rwSJp_ZwpEbGdrcN5Y29ycA
is_a: UBERON:0001780 ! spinal nerve
[Term]
id: UBERON:0003727
name: intercostal nerve
def: "The intercostal nerves are the anterior divisions (rami anteriores; ventral divisions) of the thoracic spinal nerves from T1 to T11. Each nerve is connected with the adjoining ganglion of the sympathetic trunk by a gray and a white ramus communicans. The intercostal nerves are distributed chiefly to the thoracic pleura and abdominal peritoneum and differ from the anterior divisions of the other spinal nerves in that each pursues an independent course without plexus formation. The first two nerves supply fibers to the upper limb in addition to their thoracic branches; the next four are limited in their distribution to the parietes of the thorax; the lower five supply the parietes of the thorax and abdomen. The 7th intercostal nerve terminates at the xyphoid process, at the lower end of the sternum. The 10th intercostal nerve terminates at the umbilicus. The twelfth thoracic is distributed to the abdominal wall and groin. [WP,unvetted]." [Wikipedia:Intercostal_nerves]
synonym: "anterior ramus of thoracic nerve" EXACT [FMA:6028]
synonym: "anterior ramus of thoracic spinal nerve" EXACT [FMA:6028]
synonym: "ramus anterior, nervus thoracicus" EXACT [FMA:6028]
synonym: "thoracic anterior ramus" EXACT [FMA:6028]
synonym: "ventral ramus of thoracic spinal nerve" EXACT [FMA:6028]
xref: FMA:6028
xref: GAID:858
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Gray819.png/200px-Gray819.png
xref: ncithesaurus:Intercostal_Nerve
is_a: UBERON:0001780 ! spinal nerve
[Term]
id: UBERON:0003728
name: mediastinum
def: "The mediastinum is a non-delineated group of structures in the thorax, surrounded by loose connective tissue. It is the central compartment of the thoracic cavity. It contains the heart, the great vessels of the heart, esophagus, trachea, phrenic nerve, cardiac nerve, thoracic duct, thymus, and lymph nodes of the central chest. The mediastinum lies between the right and left pleura in and near the median sagittal plane of the chest. It extends from the sternum in front to the vertebral column behind, and contains all the thoracic viscera except the lungs. It may be divided for purposes of description into two parts:an upper portion, above the upper level of the pericardium, which is named the superior mediastinum with its superior limit at the superior thoracic opening and its inferior limit at the plane from the sternal angle to the disc of T4-T5 (Plane of Ludwig at Angle of Louis); and a lower portion, below the upper level of the pericardium. This lower portion is again subdivided into three parts, viz. that in front of the pericardium, the anterior mediastinum; that containing the pericardium and its contents, the middle mediastinum; and that behind the pericardium, the posterior mediastinum. It is surrounded by the chest wall anteriorly, the lungs laterally and the spine posteriorly. It is continuous with the loose connective tissue of the neck, and extends inferiorly onto the diaphragm." [Wikipedia:Mediastinum]
synonym: "mediastinal part of chest" EXACT [FMA:9826]
xref: FMA:9826
xref: GAID:94
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Mediastinum.png/200px-Mediastinum.png
xref: ncithesaurus:Mediastinum
xref: OpenCyc:Mx4rv2OKJ5wpEbGdrcN5Y29ycA
is_a: UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003729
name: mouth mucosa
def: "A mucosa that is part of a mouth [Obol]." [OBOL:automatic]
synonym: "adult mouth mucosa" EXACT [OBOL:automatic]
synonym: "adult mouth mucosa of organ" EXACT [OBOL:automatic]
synonym: "adult mouth mucous membrane" EXACT [OBOL:automatic]
synonym: "adult mouth organ mucosa" EXACT [OBOL:automatic]
synonym: "buccal mucosa" RELATED [GAID:951]
synonym: "mouth mucosa" EXACT [FMA:59660]
synonym: "mouth mucosa of organ" EXACT [OBOL:automatic]
synonym: "mouth mucous membrane" EXACT [OBOL:automatic]
synonym: "mouth organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of adult mouth" EXACT [OBOL:automatic]
synonym: "mucosa of mouth" EXACT [OBOL:automatic]
synonym: "mucosa of organ of adult mouth" EXACT [OBOL:automatic]
synonym: "mucosa of organ of mouth" EXACT [OBOL:automatic]
synonym: "mucous membrane of adult mouth" EXACT [OBOL:automatic]
synonym: "mucous membrane of mouth" EXACT [FMA:59660]
synonym: "oral mucosa" RELATED [GAID:951]
synonym: "oral part of viscerocranial mucosa" EXACT [FMA:59660]
synonym: "organ mucosa of adult mouth" EXACT [OBOL:automatic]
synonym: "organ mucosa of mouth" EXACT [OBOL:automatic]
xref: FMA:59660
xref: GAID:951
xref: MA:0002794
is_a: UBERON:0000344 ! mucosa
is_a: UBERON:0004786 ! implied link automatically realized ! gastrointestinal system mucosa
relationship: part_of UBERON:0000165
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0003820
name: prostate bud
def: "A region of the fetal urogenital sinus epithelium destined to become the prostate[GO]." [GO:0060513]
synonym: "prostate field" NARROW []
synonym: "prostatic bud" EXACT []
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0004902 ! urogenital sinus epithelium
[Term]
id: UBERON:0003821
name: metacarpal/metatarsal bone
synonym: "metacarpal or metatarsal bone" EXACT []
synonym: "metacarpal/metatarsal" EXACT []
synonym: "metapodium" EXACT [http://en.wiktionary.org/wiki/metapodial, UBERON:cjm]
xref: MA:0000301
is_a: UBERON:0001474 ! bone
union_of: UBERON:0001448 ! metatarsal bone
union_of: UBERON:0002374 ! metacarpal bone
[Term]
id: UBERON:0003822
name: forelimb stylopod
def: "A stylopod that is part of a forelimb [Obol]." [OBOL:automatic]
comment: WP states: anatomical usage, the term arm refers specifically to the segment between the shoulder and the elbow, while the segment between the elbow and wrist is the forearm. However, in common, literary, and historical usage, arm refers to the entire upper limb from shoulder to wrist. FMA uses the term Arm for this class, so we place it here.
synonym: "arm" RELATED INCONSISTENT [FMA:24890]
synonym: "brachial region" EXACT []
synonym: "forelimb stylopodium" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb" EXACT []
synonym: "proximal segment of free upper limb" EXACT []
synonym: "stylopod of arm" EXACT []
synonym: "stylopod of forelimb" EXACT []
synonym: "upper arm" EXACT [MA:0000035]
xref: EHDAA:4186
xref: EHDAA:6234
xref: EHDAA2:0002112
xref: FMA:24890
xref: galen:Arm
xref: HOG:0000343
xref: MA:0000035
xref: ncithesaurus:Arm
xref: OpenCyc:Mx4rvVj0Z5wpEbGdrcN5Y29ycA
is_a: UBERON:0002472 ! implied link automatically realized ! stylopod
relationship: part_of UBERON:0002102
intersection_of: UBERON:0002472 ! stylopod
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003823
name: hindlimb zeugopod
def: "A zeugopod that is part of a hindlimb [Obol]." [OBOL:automatic]
comment: note that FMA:24979 denotes the middle segment (zeugopod), its placement here is correct
synonym: "calf" NARROW []
synonym: "hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopodium" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb" EXACT [FMA:24979]
synonym: "lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "lower leg" EXACT []
synonym: "middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb" EXACT [OBOL:automatic]
xref: EHDAA:5165
xref: EHDAA:6190
xref: EHDAA2:0001030
xref: FMA:24979
xref: FMA:24984
xref: galen:Leg
xref: HOG:0000348
xref: MA:0000051
xref: ncithesaurus:Leg
xref: OpenCyc:Mx4rvczZBpwpEbGdrcN5Y29ycA
is_a: UBERON:0002471 ! zeugopod
relationship: part_of UBERON:0002103
intersection_of: UBERON:0002471 ! zeugopod
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003824
name: thoracic segment nerve
def: "A nerve that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "nerve of thorax" EXACT [OBOL:automatic]
synonym: "thorax nerve" EXACT [OBOL:automatic]
xref: MA:0000562
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
relationship: part_of UBERON:0000915
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0003825
name: abdominal segment nerve
def: "A nerve that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
synonym: "abdominal segment of trunk nerve" EXACT [OBOL:automatic]
synonym: "nerve of abdominal segment of trunk" EXACT [OBOL:automatic]
xref: MA:0000528
is_a: UBERON:0003439 ! implied link automatically realized ! trunk nerve
relationship: part_of UBERON:0002417
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003826
name: upper leg bone
def: "A bone that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
xref: MA:0000682
is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone
relationship: part_of UBERON:0000376
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0003827
name: thoracic segment bone
def: "A bone that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "bone of thorax" EXACT [OBOL:automatic]
synonym: "bone organ of thorax" EXACT [OBOL:automatic]
synonym: "thorax bone" EXACT [OBOL:automatic]
synonym: "thorax bone organ" EXACT [OBOL:automatic]
xref: MA:0000559
is_a: UBERON:0001474 ! implied link automatically realized ! bone
relationship: part_of UBERON:0000915
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0003828
name: abdominal segment bone
def: "A bone that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
synonym: "abdominal segment of trunk bone" EXACT [OBOL:automatic]
synonym: "abdominal segment of trunk bone organ" EXACT [OBOL:automatic]
synonym: "bone of abdominal segment of trunk" EXACT [OBOL:automatic]
synonym: "bone organ of abdominal segment of trunk" EXACT [OBOL:automatic]
xref: MA:0000525
is_a: UBERON:0003463 ! implied link automatically realized ! trunk bone
relationship: part_of UBERON:0002417
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003829
name: urethra muscle
def: "A muscle organ that is part of a urethra [Obol]." [OBOL:automatic]
synonym: "muscle organ of urethra" EXACT [OBOL:automatic]
synonym: "urethra muscle organ" EXACT [OBOL:automatic]
xref: MA:0002649
is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ
relationship: part_of UBERON:0000057
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0003830
name: thoracic segment muscle
def: "A muscle organ that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "muscle organ of thorax" EXACT [OBOL:automatic]
synonym: "thorax muscle organ" EXACT [OBOL:automatic]
xref: MA:0000561
is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ
relationship: part_of UBERON:0000915
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0003831
name: respiratory system muscle
def: "A muscle organ that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "muscle organ of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system muscle organ" EXACT [OBOL:automatic]
xref: MA:0001828
is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003832
name: esophagus muscle
def: "A muscle organ that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophagus muscle organ" EXACT [OBOL:automatic]
synonym: "gullet muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of esophagus" EXACT [OBOL:automatic]
synonym: "muscle organ of gullet" EXACT [OBOL:automatic]
synonym: "muscle organ of oesophagus" EXACT [OBOL:automatic]
synonym: "oesophagus muscle organ" EXACT [OBOL:automatic]
xref: MA:0002682
is_a: UBERON:0003830 ! implied link automatically realized ! thoracic segment muscle
is_a: UBERON:0005178 ! implied link automatically realized ! thoracic cavity organ
relationship: part_of UBERON:0001043
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0003833
name: abdominal segment muscle
def: "A muscle organ that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
synonym: "abdominal segment of trunk muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of abdominal segment of trunk" EXACT [OBOL:automatic]
xref: MA:0000527
is_a: UBERON:0001774 ! implied link automatically realized ! muscle of trunk
relationship: part_of UBERON:0002417
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003834
name: thoracic segment blood vessel
def: "A blood vessel that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "blood vessel of thorax" EXACT [OBOL:automatic]
synonym: "thorax blood vessel" EXACT [OBOL:automatic]
xref: MA:0000558
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
relationship: part_of UBERON:0000915
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0003835
name: abdominal segment blood vessel
def: "A blood vessel that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
synonym: "abdominal segment of trunk blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of abdominal segment of trunk" EXACT [OBOL:automatic]
xref: MA:0000524
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
relationship: part_of UBERON:0002417
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003836
name: abdominal segment skin
def: "A skin of body that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
synonym: "abdominal segment of trunk skin" EXACT [OBOL:automatic]
synonym: "skin of abdominal segment of trunk" EXACT [OBOL:automatic]
xref: MA:0000530
is_a: UBERON:0002097 ! implied link automatically realized ! skin of body
relationship: part_of UBERON:0002417
intersection_of: UBERON:0002097 ! skin of body
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003837
name: thoracic segment connective tissue
def: "A portion of connective tissue that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "connective tissue of thorax" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of thorax" EXACT [OBOL:automatic]
synonym: "textus connectivus of thorax" EXACT [OBOL:automatic]
synonym: "thorax connective tissue" EXACT [OBOL:automatic]
synonym: "thorax portion of connective tissue" EXACT [OBOL:automatic]
synonym: "thorax textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000560
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
relationship: part_of UBERON:0000915
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0003838
name: abdominal segment connective tissue
def: "A portion of connective tissue that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
synonym: "abdominal segment of trunk connective tissue" EXACT [OBOL:automatic]
synonym: "abdominal segment of trunk portion of connective tissue" EXACT [OBOL:automatic]
synonym: "abdominal segment of trunk textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of abdominal segment of trunk" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of abdominal segment of trunk" EXACT [OBOL:automatic]
synonym: "textus connectivus of abdominal segment of trunk" EXACT [OBOL:automatic]
xref: MA:0000526
is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue
relationship: part_of UBERON:0002417
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003839
name: forelimb joint
def: "A limb joint that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb joint of limb" EXACT [OBOL:automatic]
synonym: "anteriormost limb limb joint" EXACT [OBOL:automatic]
synonym: "fore limb joint of limb" EXACT [OBOL:automatic]
synonym: "fore limb limb joint" EXACT [OBOL:automatic]
synonym: "forelimb joint of limb" EXACT [OBOL:automatic]
synonym: "forelimb limb joint" EXACT [OBOL:automatic]
synonym: "joint of limb of anteriormost limb" EXACT [OBOL:automatic]
synonym: "joint of limb of fore limb" EXACT [OBOL:automatic]
synonym: "joint of limb of forelimb" EXACT [OBOL:automatic]
synonym: "joint of limb of superior member" EXACT [OBOL:automatic]
synonym: "joint of limb of upper extremity" EXACT [OBOL:automatic]
synonym: "limb joint of anteriormost limb" EXACT [OBOL:automatic]
synonym: "limb joint of fore limb" EXACT [OBOL:automatic]
synonym: "limb joint of forelimb" EXACT [OBOL:automatic]
synonym: "limb joint of superior member" EXACT [OBOL:automatic]
synonym: "limb joint of upper extremity" EXACT [OBOL:automatic]
synonym: "superior member joint of limb" EXACT [OBOL:automatic]
synonym: "superior member limb joint" EXACT [OBOL:automatic]
synonym: "upper extremity joint of limb" EXACT [OBOL:automatic]
synonym: "upper extremity limb joint" EXACT [OBOL:automatic]
xref: MA:0000614
is_a: UBERON:0003657 ! implied link automatically realized ! limb joint
relationship: part_of UBERON:0002102
intersection_of: UBERON:0003657 ! limb joint
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003840
name: hindlimb joint
def: "A limb joint that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "hind limb joint of limb" EXACT [OBOL:automatic]
synonym: "hind limb limb joint" EXACT [OBOL:automatic]
synonym: "hindlimb joint of limb" EXACT [OBOL:automatic]
synonym: "hindlimb limb joint" EXACT [OBOL:automatic]
synonym: "inferior member joint of limb" EXACT [OBOL:automatic]
synonym: "inferior member limb joint" EXACT [OBOL:automatic]
synonym: "joint of limb of hind limb" EXACT [OBOL:automatic]
synonym: "joint of limb of hindlimb" EXACT [OBOL:automatic]
synonym: "joint of limb of inferior member" EXACT [OBOL:automatic]
synonym: "joint of limb of lower extremity" EXACT [OBOL:automatic]
synonym: "limb joint of hind limb" EXACT [OBOL:automatic]
synonym: "limb joint of hindlimb" EXACT [OBOL:automatic]
synonym: "limb joint of inferior member" EXACT [OBOL:automatic]
synonym: "limb joint of lower extremity" EXACT [OBOL:automatic]
synonym: "lower extremity joint of limb" EXACT [OBOL:automatic]
synonym: "lower extremity limb joint" EXACT [OBOL:automatic]
xref: MA:0000662
is_a: UBERON:0003657 ! implied link automatically realized ! limb joint
relationship: part_of UBERON:0002103
intersection_of: UBERON:0003657 ! limb joint
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003841
name: autopod joint
def: "A limb joint that is part of an autopod [Obol]." [OBOL:automatic]
synonym: "autopod joint of limb" EXACT [OBOL:automatic]
synonym: "autopod limb joint" EXACT [OBOL:automatic]
synonym: "distal free limb segment joint of limb" EXACT [OBOL:automatic]
synonym: "distal free limb segment limb joint" EXACT [OBOL:automatic]
synonym: "joint of limb of autopod" EXACT [OBOL:automatic]
synonym: "joint of limb of distal free limb segment" EXACT [OBOL:automatic]
synonym: "limb joint of autopod" EXACT [OBOL:automatic]
synonym: "limb joint of distal free limb segment" EXACT [OBOL:automatic]
xref: MA:0002715
is_a: UBERON:0003657 ! implied link automatically realized ! limb joint
relationship: part_of UBERON:0002470
intersection_of: UBERON:0003657 ! limb joint
intersection_of: part_of UBERON:0002470 ! autopod
[Term]
id: UBERON:0003842
name: neural lumen
comment: TODO - check
xref: EHDAA:2889
xref: EHDAA:914
xref: HOG:0001119
xref: XAO:0000252
is_a: UBERON:0000464 ! implied link automatically realized ! anatomical space
[Term]
id: UBERON:0003843
name: tooth epithelium
def: "An epithelium that is part of a calcareous tooth [Obol]." [OBOL:automatic]
synonym: "calcareous tooth epithelial tissue" EXACT [OBOL:automatic]
synonym: "calcareous tooth epithelium" EXACT [OBOL:automatic]
synonym: "dental epithelium" EXACT [ZFA:0005134]
synonym: "dentine containing tooth epithelial tissue" EXACT [OBOL:automatic]
synonym: "dentine containing tooth epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of calcareous tooth" EXACT [OBOL:automatic]
synonym: "epithelial tissue of dentine containing tooth" EXACT [OBOL:automatic]
synonym: "epithelial tissue of tooth" EXACT [OBOL:automatic]
synonym: "epithelial tissue of vertebrate tooth" EXACT [OBOL:automatic]
synonym: "epithelium of calcareous tooth" EXACT [OBOL:automatic]
synonym: "epithelium of dentine containing tooth" EXACT [OBOL:automatic]
synonym: "epithelium of tooth" EXACT [OBOL:automatic]
synonym: "epithelium of vertebrate tooth" EXACT [OBOL:automatic]
synonym: "tooth epithelial tissue" EXACT [OBOL:automatic]
synonym: "vertebrate tooth epithelial tissue" EXACT [OBOL:automatic]
synonym: "vertebrate tooth epithelium" EXACT [OBOL:automatic]
xref: HOG:0001443
xref: XAO:0003203
xref: ZFA:0005134
xref: ZFA:0005135
is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium
relationship: part_of UBERON:0001091
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003844
name: upper eyelid epithelium
def: "An epithelium that is part of a upper eyelid [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of superior eyelid" EXACT [OBOL:automatic]
synonym: "epithelial tissue of upper eyelid" EXACT [OBOL:automatic]
synonym: "epithelium of superior eyelid" EXACT [OBOL:automatic]
synonym: "epithelium of upper eyelid" EXACT [OBOL:automatic]
synonym: "superior eyelid epithelial tissue" EXACT [OBOL:automatic]
synonym: "superior eyelid epithelium" EXACT [OBOL:automatic]
synonym: "upper eyelid epithelial tissue" EXACT [OBOL:automatic]
xref: EHDAA2:0002116
xref: HOG:0000638
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0001712
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001712 ! upper eyelid
[Term]
id: UBERON:0003845
name: lower eyelid epithelium
def: "An epithelium that is part of a lower eyelid [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of inferior eyelid" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lower eyelid" EXACT [OBOL:automatic]
synonym: "epithelium of inferior eyelid" EXACT [OBOL:automatic]
synonym: "epithelium of lower eyelid" EXACT [OBOL:automatic]
synonym: "inferior eyelid epithelial tissue" EXACT [OBOL:automatic]
synonym: "inferior eyelid epithelium" EXACT [OBOL:automatic]
synonym: "lower eyelid epithelial tissue" EXACT [OBOL:automatic]
xref: EHDAA2:0001016
xref: HOG:0000637
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001713
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001713 ! lower eyelid
[Term]
id: UBERON:0003846
name: thymus epithelium
def: "the supporting framework of the thymus." [MP:0009544]
synonym: "epithelial tissue of thymus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of thymus gland" EXACT [OBOL:automatic]
synonym: "epithelium of thymus" EXACT [OBOL:automatic]
synonym: "epithelium of thymus gland" EXACT [OBOL:automatic]
synonym: "thymus epithelial tissue" EXACT [OBOL:automatic]
synonym: "thymus gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "thymus gland epithelium" EXACT [OBOL:automatic]
xref: EHDAA2:0002019
xref: HOG:0001426
xref: MA:0000768
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0002370
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002370 ! thymus
[Term]
id: UBERON:0003847
name: thyroid artery
def: "An artery that is part of a thyroid [Obol]." [OBOL:automatic]
xref: EHDAA:7372
xref: EHDAA2:0002029
xref: HOG:0001366
xref: MA:0002066
xref: ncithesaurus:Thyroid_Artery
is_a: UBERON:0001637 ! implied link automatically realized ! artery
relationship: part_of UBERON:0002046
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0003848
name: gonadal vein
def: "In medicine, gonadal vein refers to the blood vessel that carrying blood away from the gonad (testis, ovary) toward the heart. Females : ovarian vein Males : testicular vein [WP,unvetted]." [Wikipedia:Gonadal_vein]
synonym: "gonad vein" EXACT [OBOL:automatic]
synonym: "gonada vein" EXACT [OBOL:automatic]
synonym: "vein of gonad" EXACT [OBOL:automatic]
synonym: "vein of gonada" EXACT [OBOL:automatic]
xref: EHDAA:8703
xref: EHDAA2:0000719
xref: HOG:0001340
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray1120.png/200px-Gray1120.png
xref: OpenCyc:Mx4rvlWYh5wpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! implied link automatically realized ! vein
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000991
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0000991 ! gonad
[Term]
id: UBERON:0003849
name: neural crest midbrain
def: "A midbrain that is part of a neural crest [Obol]." [OBOL:automatic]
synonym: "midbrain of neural crest" EXACT [OBOL:automatic]
xref: HOG:0000796
xref: ZFA:0000935
is_a: UBERON:0001891 ! implied link automatically realized ! midbrain
relationship: part_of UBERON:0002342
intersection_of: UBERON:0001891 ! midbrain
intersection_of: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0003850
name: neural crest telencephalon
def: "A telencephalon that is part of a neural crest [Obol]." [OBOL:automatic]
synonym: "telencephalon of neural crest" EXACT [OBOL:automatic]
xref: EHDAA2:0001991
xref: HOG:0000799
xref: ZFA:0000812
is_a: UBERON:0001893 ! implied link automatically realized ! telencephalon
relationship: part_of UBERON:0002342
intersection_of: UBERON:0001893 ! telencephalon
intersection_of: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0003851
name: neural crest diencephalon
def: "A diencephalon that is part of a neural crest [Obol]." [OBOL:automatic]
synonym: "between brain of neural crest" EXACT [OBOL:automatic]
synonym: "diencephalon of neural crest" EXACT [OBOL:automatic]
synonym: "interbrain of neural crest" EXACT [OBOL:automatic]
synonym: "mature diencephalon of neural crest" EXACT [OBOL:automatic]
synonym: "neural crest between brain" EXACT [OBOL:automatic]
synonym: "neural crest interbrain" EXACT [OBOL:automatic]
synonym: "neural crest mature diencephalon" EXACT [OBOL:automatic]
xref: HOG:0000798
xref: ZFA:0000811
is_a: UBERON:0001894 ! implied link automatically realized ! diencephalon
relationship: part_of UBERON:0002342
intersection_of: UBERON:0001894 ! diencephalon
intersection_of: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0003852
name: neural crest hindbrain
def: "A hindbrain that is part of a neural crest [Obol]." [OBOL:automatic]
synonym: "hindbrain of neural crest" EXACT [OBOL:automatic]
xref: HOG:0001210
xref: YMB:0007000
xref: ZFA:0007063
is_a: UBERON:0002028 ! implied link automatically realized ! hindbrain
relationship: part_of UBERON:0002342
intersection_of: UBERON:0002028 ! hindbrain
intersection_of: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0003853
name: neural crest spinal cord
def: "A spinal cord that is part of a neural crest [Obol]." [OBOL:automatic]
synonym: "spinal cord of neural crest" EXACT [OBOL:automatic]
xref: HOG:0001006
is_a: UBERON:0002240 ! implied link automatically realized ! spinal cord
relationship: part_of UBERON:0002342
intersection_of: UBERON:0002240 ! spinal cord
intersection_of: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0003854
name: spinal cord neural plate
def: "A neural plate that is part of a spinal cord [Obol]." [OBOL:automatic]
synonym: "neural plate of spinal cord" EXACT [OBOL:automatic]
xref: HOG:0000439
xref: ZFA:0007021
is_a: UBERON:0003075 ! implied link automatically realized ! neural plate
relationship: part_of UBERON:0002240
intersection_of: UBERON:0003075 ! neural plate
intersection_of: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0003855
name: gonad mesenchyme
def: "A mesenchyme that is part of a gonad [Obol]." [OBOL:automatic]
synonym: "gonada mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of gonad" EXACT [OBOL:automatic]
synonym: "mesenchyme of gonada" EXACT [OBOL:automatic]
xref: HOG:0001090
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000991
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000991 ! gonad
[Term]
id: UBERON:0003856
name: tooth mesenchyme
def: "A mesenchyme that is part of a calcareous tooth [Obol]." [OBOL:automatic]
synonym: "calcareous tooth mesenchyme" EXACT [OBOL:automatic]
synonym: "dentine containing tooth mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of calcareous tooth" EXACT [OBOL:automatic]
synonym: "mesenchyme of dentine containing tooth" EXACT [OBOL:automatic]
synonym: "mesenchyme of tooth" EXACT [OBOL:automatic]
synonym: "mesenchyme of vertebrate tooth" EXACT [OBOL:automatic]
synonym: "vertebrate tooth mesenchyme" EXACT [OBOL:automatic]
xref: HOG:0001444
xref: ZFA:0005139
is_a: UBERON:0005253 ! implied link automatically realized ! head mesenchyme
relationship: part_of UBERON:0001091
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003857
name: upper eyelid mesenchyme
def: "A mesenchyme that is part of a upper eyelid [Obol]." [OBOL:automatic]
synonym: "mesenchyme of superior eyelid" EXACT [OBOL:automatic]
synonym: "mesenchyme of upper eyelid" EXACT [OBOL:automatic]
synonym: "superior eyelid mesenchyme" EXACT [OBOL:automatic]
xref: EHDAA2:0002117
xref: HOG:0001093
is_a: UBERON:0003314 ! implied link automatically realized ! mesenchyme of eye
is_a: UBERON:0005253 ! implied link automatically realized ! head mesenchyme
relationship: part_of UBERON:0001712
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001712 ! upper eyelid
[Term]
id: UBERON:0003858
name: lower eyelid mesenchyme
def: "A mesenchyme that is part of a lower eyelid [Obol]." [OBOL:automatic]
synonym: "inferior eyelid mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of inferior eyelid" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower eyelid" EXACT [OBOL:automatic]
xref: EHDAA2:0001017
xref: HOG:0001036
is_a: UBERON:0003314 ! implied link automatically realized ! mesenchyme of eye
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005253 ! implied link automatically realized ! head mesenchyme
relationship: part_of UBERON:0001713
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001713 ! lower eyelid
[Term]
id: UBERON:0003859
name: forelimb mesenchyme
def: "A mesenchyme that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "anteriormost limb mesenchyme" EXACT [OBOL:automatic]
synonym: "fore limb mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of anteriormost limb" EXACT [OBOL:automatic]
synonym: "mesenchyme of fore limb" EXACT [OBOL:automatic]
synonym: "mesenchyme of forelimb" EXACT [OBOL:automatic]
synonym: "mesenchyme of superior member" EXACT [OBOL:automatic]
synonym: "mesenchyme of upper extremity" EXACT [OBOL:automatic]
synonym: "superior member mesenchyme" EXACT [OBOL:automatic]
synonym: "upper extremity mesenchyme" EXACT [OBOL:automatic]
xref: HOG:0001109
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
relationship: part_of UBERON:0002102
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003860
name: hindlimb mesenchyme
def: "A mesenchyme that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "hind limb mesenchyme" EXACT [OBOL:automatic]
synonym: "inferior member mesenchyme" EXACT [OBOL:automatic]
synonym: "lower extremity mesenchyme" EXACT [OBOL:automatic]
synonym: "mesenchyme of hind limb" EXACT [OBOL:automatic]
synonym: "mesenchyme of hindlimb" EXACT [OBOL:automatic]
synonym: "mesenchyme of inferior member" EXACT [OBOL:automatic]
synonym: "mesenchyme of lower extremity" EXACT [OBOL:automatic]
xref: HOG:0001074
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
relationship: part_of UBERON:0002103
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003861
name: vertebral arch
def: "posterior part of a vertebra that consists of a pair of pedicles and a pair of laminae, and supports seven processes: four articular processes, two transverse processes one spinous process[WP]. ZFA: A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone." [Wikipedia:Vertebral_arch]
synonym: "arch of vertebra" EXACT [FMA:11946]
synonym: "neural arch" EXACT []
synonym: "vertebra neural arch" EXACT [MA:0001453]
xref: AAO:0000725
xref: BTO:0001763
xref: FMA:11946
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray82.png/200px-Gray82.png
xref: MA:0001453
xref: OpenCyc:Mx4rwKYHvZwpEbGdrcN5Y29ycA
xref: ZFA:0001066
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004247 ! implied link automatically realized ! back bone
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0003862
name: foot digit 4 phalanx
def: "A phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic]
synonym: "digit long bone of foot digit 4" EXACT [OBOL:automatic]
synonym: "foot digit 4 digit long bone" EXACT [OBOL:automatic]
synonym: "foot digit 4 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of foot digit 4" EXACT [OBOL:automatic]
synonym: "phalanx of foot digit 4" EXACT [OBOL:automatic]
xref: FMA:32901
xref: MA:0001384
xref: ncithesaurus:Foot_Digit_4_Phalanx
is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe
relationship: part_of UBERON:0003634
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003634 ! foot digit 4
[Term]
id: UBERON:0003863
name: foot digit 5 phalanx
def: "A phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic]
synonym: "digit long bone of foot digit 5" EXACT [OBOL:automatic]
synonym: "foot digit 5 digit long bone" EXACT [OBOL:automatic]
synonym: "foot digit 5 long bone of digit" EXACT [OBOL:automatic]
synonym: "long bone of digit of foot digit 5" EXACT [OBOL:automatic]
synonym: "phalanx of foot digit 5" EXACT [OBOL:automatic]
xref: FMA:32902
xref: MA:0001385
xref: ncithesaurus:Foot_Digit_5_Phalanx
is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe
relationship: part_of UBERON:0003635
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003635 ! foot digit 5
[Term]
id: UBERON:0003864
name: middle phalanx of finger
def: "A middle phalanx that is part of a finger [Obol]." [OBOL:automatic]
synonym: "middle phalanx of hand" EXACT []
xref: FMA:75817
xref: MA:0001394
xref: ncithesaurus:Middle_Phalanx_of_the_Hand
is_a: UBERON:0001436 ! phalanx of finger
is_a: UBERON:0004301 ! implied link automatically realized ! middle phalanx
relationship: part_of UBERON:0002389
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0003865
name: distal phalanx of finger
def: "A distal phalanx that is part of a finger [Obol]." [OBOL:automatic]
synonym: "distal phalanx of hand" EXACT []
xref: FMA:75818
xref: MA:0001388
xref: ncithesaurus:Distal_Phalanx_of_Hand
is_a: UBERON:0001436 ! phalanx of finger
is_a: UBERON:0004300 ! implied link automatically realized ! distal phalanx
relationship: part_of UBERON:0002389
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0003866
name: middle phalanx of toe
def: "A middle phalanx that is part of a toe [Obol]." [OBOL:automatic]
synonym: "middle phalanx of foot" EXACT []
xref: FMA:75829
xref: MA:0001386
is_a: UBERON:0001449 ! phalanx of toe
is_a: UBERON:0004301 ! implied link automatically realized ! middle phalanx
relationship: part_of UBERON:0001466
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0003867
name: distal phalanx of toe
def: "A distal phalanx that is part of a toe [Obol]." [OBOL:automatic]
synonym: "distal phalanx of foot" EXACT []
xref: FMA:75830
xref: MA:0001380
xref: ncithesaurus:Distal_Phalanx_of_Foot
is_a: UBERON:0001449 ! phalanx of toe
is_a: UBERON:0004300 ! implied link automatically realized ! distal phalanx
relationship: part_of UBERON:0001466
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0003868
name: proximal phalanx of toe
def: "A proximal phalanx that is part of a toe [Obol]." [OBOL:automatic]
synonym: "proximal phalanx of foot" EXACT []
xref: FMA:75828
xref: MA:0001387
xref: ncithesaurus:Proximal_Phalanx_of_Foot
is_a: UBERON:0001449 ! phalanx of toe
is_a: UBERON:0004302 ! implied link automatically realized ! proximal phalanx
relationship: part_of UBERON:0001466
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0003869
name: presumptive ganglion
is_a: UBERON:0000479 ! implied link automatically realized ! portion of tissue
relationship: develops_into UBERON:0000045
intersection_of: UBERON:0000479 ! portion of tissue
intersection_of: develops_into UBERON:0000045 ! ganglion
[Term]
id: UBERON:0003874
name: presumptive ventricle
is_obsolete: true
[Term]
id: UBERON:0003876
name: hippocampal region
def: "a part or parts of the hippocampus that have a particular function." [MP:0008262]
synonym: "Ammon's horn anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "Ammon's horn biological structure of brain" EXACT [OBOL:automatic]
synonym: "Ammon's horn brain anatomical structure" EXACT [OBOL:automatic]
synonym: "Ammon's horn brain biological structure" EXACT [OBOL:automatic]
synonym: "Ammon's horn neuraxis segment" EXACT [OBOL:automatic]
synonym: "Ammon's horn regional part of brain" EXACT [OBOL:automatic]
synonym: "Ammon's horn segment of brain" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of Ammon's horn" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of hippocampus" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of hippocampus major" EXACT [OBOL:automatic]
synonym: "anatomical structure of brain of hippocampus proper" EXACT [OBOL:automatic]
synonym: "biological structure of brain of Ammon's horn" EXACT [OBOL:automatic]
synonym: "biological structure of brain of hippocampus" EXACT [OBOL:automatic]
synonym: "biological structure of brain of hippocampus major" EXACT [OBOL:automatic]
synonym: "biological structure of brain of hippocampus proper" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of Ammon's horn" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of hippocampus" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of hippocampus major" EXACT [OBOL:automatic]
synonym: "brain anatomical structure of hippocampus proper" EXACT [OBOL:automatic]
synonym: "brain biological structure of Ammon's horn" EXACT [OBOL:automatic]
synonym: "brain biological structure of hippocampus" EXACT [OBOL:automatic]
synonym: "brain biological structure of hippocampus major" EXACT [OBOL:automatic]
synonym: "brain biological structure of hippocampus proper" EXACT [OBOL:automatic]
synonym: "hippocampus anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "hippocampus biological structure of brain" EXACT [OBOL:automatic]
synonym: "hippocampus brain anatomical structure" EXACT [OBOL:automatic]
synonym: "hippocampus brain biological structure" EXACT [OBOL:automatic]
synonym: "hippocampus major anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "hippocampus major biological structure of brain" EXACT [OBOL:automatic]
synonym: "hippocampus major brain anatomical structure" EXACT [OBOL:automatic]
synonym: "hippocampus major brain biological structure" EXACT [OBOL:automatic]
synonym: "hippocampus major neuraxis segment" EXACT [OBOL:automatic]
synonym: "hippocampus major regional part of brain" EXACT [OBOL:automatic]
synonym: "hippocampus major segment of brain" EXACT [OBOL:automatic]
synonym: "hippocampus neuraxis segment" EXACT [OBOL:automatic]
synonym: "hippocampus proper anatomical structure of brain" EXACT [OBOL:automatic]
synonym: "hippocampus proper biological structure of brain" EXACT [OBOL:automatic]
synonym: "hippocampus proper brain anatomical structure" EXACT [OBOL:automatic]
synonym: "hippocampus proper brain biological structure" EXACT [OBOL:automatic]
synonym: "hippocampus proper neuraxis segment" EXACT [OBOL:automatic]
synonym: "hippocampus proper regional part of brain" EXACT [OBOL:automatic]
synonym: "hippocampus proper segment of brain" EXACT [OBOL:automatic]
synonym: "hippocampus region" EXACT []
synonym: "hippocampus regional part of brain" EXACT [OBOL:automatic]
synonym: "hippocampus segment of brain" EXACT [OBOL:automatic]
synonym: "neuraxis segment of Ammon's horn" EXACT [OBOL:automatic]
synonym: "neuraxis segment of hippocampus" EXACT [OBOL:automatic]
synonym: "neuraxis segment of hippocampus major" EXACT [OBOL:automatic]
synonym: "neuraxis segment of hippocampus proper" EXACT [OBOL:automatic]
synonym: "regional part of brain of Ammon's horn" EXACT [OBOL:automatic]
synonym: "regional part of brain of hippocampus" EXACT [OBOL:automatic]
synonym: "regional part of brain of hippocampus major" EXACT [OBOL:automatic]
synonym: "regional part of brain of hippocampus proper" EXACT [OBOL:automatic]
synonym: "segment of brain of Ammon's horn" EXACT [OBOL:automatic]
synonym: "segment of brain of hippocampus" EXACT [OBOL:automatic]
synonym: "segment of brain of hippocampus major" EXACT [OBOL:automatic]
synonym: "segment of brain of hippocampus proper" EXACT [OBOL:automatic]
synonym: "subdivision of hippocampus" EXACT []
xref: FMA:74041
xref: MA:0002428
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001954
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001954 ! hippocampus
relationship: part_of UBERON:0001954 ! hippocampus
[Term]
id: UBERON:0003881
name: CA1 field of hippocampus
synonym: "CA1" EXACT []
synonym: "CA1 field" EXACT []
synonym: "CA1 field of hippocampus" EXACT []
synonym: "hippocampus CA1" EXACT []
synonym: "region 1 of Ammon's horn" EXACT []
xref: EFO:0002454
xref: FMA:74042
xref: MA:0000950
xref: NIF_GrossAnatomy:birnlex_1197
is_a: UBERON:0003876 ! hippocampal region
[Term]
id: UBERON:0003882
name: CA2 field of hippocampus
synonym: "CA2" EXACT []
synonym: "CA2 field" EXACT []
synonym: "CA2 field of hippocampus" EXACT []
synonym: "hippocampus CA2" EXACT []
synonym: "region 2 of Ammon's horn" EXACT []
xref: EFO:0002455
xref: FMA:74044
xref: MA:0000951
xref: NIF_GrossAnatomy:birnlex_1362
is_a: UBERON:0003876 ! hippocampal region
[Term]
id: UBERON:0003883
name: CA3 field of hippocampus
synonym: "CA3" EXACT []
synonym: "CA3 field" EXACT []
synonym: "CA3 field of hippocampus" EXACT []
synonym: "hippocampus CA3" EXACT []
synonym: "region 3 of Ammon's horn" EXACT []
xref: EFO:0002456
xref: FMA:74045
xref: MA:0000952
xref: NIF_GrossAnatomy:birnlex_1204
is_a: UBERON:0003876 ! hippocampal region
[Term]
id: UBERON:0003884
name: CA4 field of hippocampus
comment: merge into hilus?
synonym: "CA4" EXACT []
synonym: "CA4 field" EXACT []
synonym: "hippocampus CA4" EXACT []
synonym: "region 4 of Ammon's horn" EXACT []
xref: EFO:0002457
xref: FMA:75741
xref: MA:0000953
is_a: UBERON:0003876 ! hippocampal region
[Term]
id: UBERON:0003885
name: mesentery of uterus
def: "A mesentery that is part of a uterus [Obol]." [OBOL:automatic]
synonym: "mesometrium" EXACT [FMA:19816, http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html, MA:0002931]
synonym: "uterus mesentery" EXACT [Obol:obol]
xref: FMA:19816
xref: MA:0002931
is_a: UBERON:0001297 ! implied link automatically realized ! serosa of uterus
is_a: UBERON:0002095 ! implied link automatically realized ! mesentery
relationship: part_of UBERON:0000995
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0003886
name: body cavity precursor
is_a: UBERON:0002553 ! implied link automatically realized ! anatomical cavity
relationship: develops_into UBERON:0002323
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: develops_into UBERON:0002323 ! body cavity
relationship: surrounded_by UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003887
name: intraembryonic coelom
def: "In the development of the human embryo the intraembryonic coelom (or somatic coelom) is a portion of the conceptus forming in the mesoderm. During the second week of development, the lateral mesoderm splits into a dorsal somatic mesoderm (somatopleure) and a ventral splanchnic mesoderm (splanchnopleure). The resulting cavity between the somatopleure and splanchnopleure is called the intraembryonic coelom. This space will give rise to the thoracic and abdominal cavities. It briefly has a connection with the extraembryonic coelom[WP]." [Wikipedia:Intraembryonic_coelom]
synonym: "somatic coelom" EXACT []
xref: EHDAA:251
xref: HOG:0000316
xref: ncithesaurus:Intraembryonic_Coelom
is_a: UBERON:0003886 ! body cavity precursor
[Term]
id: UBERON:0003888
name: extraembryonic coelom
def: "cavity between Heuser's membrane and the Trophoblast[WP]." [Wikipedia:Extraembryonic_coelom]
synonym: "chorionic cavity" EXACT []
xref: EHDAA:146
xref: EHDAA2:0000246
xref: FMA:63943
xref: ncithesaurus:Extraembryonic_Coelom
is_a: UBERON:0003886 ! body cavity precursor
[Term]
id: UBERON:0003889
name: fallopian tube
def: "Two very fine tubes lined with ciliated epithelia, leading from the ovaries of female mammals into the uterus, via the utero-tubal junction[WP]. Embryos have two pairs of ducts to let gametes out of the body; one pair (the Mullerian ducts) develops in females into the Fallopian tubes, uterus and vagina, while the other pair (the Wolffian ducts) develops in males into the epididymis and vas deferens." [Wikipedia:Fallopian_tube]
comment: http://en.wikipedia.org/wiki/Talk:Fallopian_tube#Homology
subset: uberon_slim
synonym: "fallopian tubes" RELATED []
synonym: "mammalian oviduct" RELATED []
synonym: "uterine tube" EXACT []
xref: BTO:0002242
xref: EFO:0000974
xref: FMA:18245
xref: GAID:365
xref: galen:FallopianTube
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/68/Scheme_female_reproductive_system-en.svg/200px-Scheme_female_reproductive_system-en.svg.png
xref: MA:0000385
xref: OpenCyc:Mx4rvViVeZwpEbGdrcN5Y29ycA
is_a: UBERON:0000993 ! oviduct
relationship: connects UBERON:0000995 ! uterus
relationship: connects UBERON:0001179 ! peritoneal cavity
relationship: develops_from UBERON:0003890 ! Mullerian duct
relationship: part_of UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0003890
name: Mullerian duct
def: "paired ducts of the embryo that run down the lateral sides of the urogenital ridge and terminate at the mullerian eminence in the primitive urogenital sinus. In the female, they will develop to form the fallopian tubes, uterus, and the upper portion of the vagina; in the male, they are lost. These ducts are made of tissue of mesodermal origin[WP]. develops either by lengthwise splitting of the archinephric duct (in chondrichthyans and some amphibians) or by a elongated invagination of the coelomic epithelium (other vertebrates) In males, the oviducts regress. The cranial end of the oviduct maintains an opening into the coelom (which primitively may have been the anteriormost coelomic funnels connecting the nephrocoel with the coelom). This opening is the ostium tubae[USM]." [http://www.usm.maine.edu/bio/courses/bio205/bio205_26_sex.html, Wikipedia:Mullerian_duct]
synonym: "Müllerian_duct" EXACT []
xref: GAID:1309
xref: HOG:0001199
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png
xref: ncithesaurus:Mullerian_Duct
xref: XAO:0000330
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003891
name: stroma
def: "connective, non-functional supportive framework of a biological cell, tissue, or organ. Contrast with parenchyma." [Wikipedia:Stroma]
xref: FMA:81494
xref: ncithesaurus:Stroma_Connective_Tissue
is_a: UBERON:0002384 ! connective tissue
[Term]
id: UBERON:0003893
name: capsule
def: "a cover or envelope partly or wholly surrounding a structure. Examples: egg shell, articular capsules, renal capsules[WP]." [Wikipedia:Capsule_(anatomy)]
comment: see also: protective structure surrounding some species of bacteria and fungi. Note that FMA has classes such as Articular capsule that are not subtypes of Capsule (which is undefined in FMA)
xref: EHDAA:4739
xref: EHDAA:9061
xref: FMA:85272
xref: galen:Capsule
xref: GO:0042603
is_a: UBERON:0000158 ! membranous layer
[Term]
id: UBERON:0003894
name: liver primordium
def: "A primordium that is fated to develop into a liver." [GOC:obol]
synonym: "liver bud" EXACT [XAO:0003266, ZFA:0000124]
xref: BTO:0001642
xref: XAO:0003266
xref: ZFA:0000124
is_a: UBERON:0001048 ! implied link automatically realized ! primordium
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: develops_into UBERON:0002107
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0002107 ! liver
relationship: develops_from UBERON:0000925 ! endoderm
[Term]
id: UBERON:0003895
name: hypaxial myotome region
def: "trunk muscle that lie ventral to the horizontal septum of the vertebrae." [Wikipedia:Epaxial_and_Hypaxial_muscles]
synonym: "body wall muscle" RELATED [XAO:0003228]
synonym: "hypaxial muscle" EXACT [ZFA:0001085]
xref: AAO:0000228
xref: XAO:0003228
xref: ZFA:0001085
is_a: UBERON:0001134 ! skeletal muscle tissue
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0003082 ! myotome
[Term]
id: UBERON:0003896
name: muscle of body wall
def: "A muscle organ that is part of a body wall [Obol]." [OBOL:automatic]
comment: TODO - check trunk vs wall of trunk. Check hypaxial myotome region
synonym: "body wall muscle" EXACT []
synonym: "body wall muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of body wall" EXACT [OBOL:automatic]
synonym: "muscle organ of Trunk wall" EXACT [OBOL:automatic]
synonym: "muscle organ of Wall of trunk" EXACT [OBOL:automatic]
synonym: "Trunk wall muscle organ" EXACT [OBOL:automatic]
synonym: "Wall of trunk muscle organ" EXACT [OBOL:automatic]
xref: BTO:0001863
is_a: UBERON:0001774 ! implied link automatically realized ! muscle of trunk
relationship: part_of UBERON:0000309
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000309 ! body wall
relationship: develops_from UBERON:0003082 ! myotome
[Term]
id: UBERON:0003897
name: axial muscle
def: "A skeletal muscle of the trunk or head." []
xref: EHDAA:5982
is_a: UBERON:0001134 ! skeletal muscle tissue
union_of: UBERON:0003898 ! skeletal muscle of trunk
union_of: UBERON:0003899 ! skeletal muscle of head
[Term]
id: UBERON:0003898
name: skeletal muscle of trunk
def: "A skeletal muscle of the trunk." []
synonym: "skeletal muscle of torso" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of torso" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of trunk" EXACT [OBOL:automatic]
synonym: "torso skeletal muscle" EXACT [OBOL:automatic]
synonym: "torso skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "trunk skeletal muscle" EXACT [OBOL:automatic]
synonym: "trunk skeletal muscle tissue" EXACT [OBOL:automatic]
is_a: UBERON:0003897 ! implied link automatically realized ! axial muscle
relationship: part_of UBERON:0002100
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0003899
name: skeletal muscle of head
def: "A skeletal muscle of the head." []
synonym: "adult head skeletal muscle" EXACT [OBOL:automatic]
synonym: "adult head skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "head skeletal muscle" EXACT [OBOL:automatic]
synonym: "head skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of adult head" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of adult head" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of head" EXACT [OBOL:automatic]
is_a: UBERON:0003897 ! implied link automatically realized ! axial muscle
relationship: part_of UBERON:0000033
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003900
name: epaxial muscle
def: "trunk muscle that lies dorsal to the septum." [Wikipedia:Epaxial_and_Hypaxial_muscles]
xref: AAO:0000142
xref: TAO:0000349
xref: XAO:0003229
xref: ZFA:0000349
is_a: UBERON:0003898 ! skeletal muscle of trunk
relationship: part_of UBERON:0001774 ! muscle of trunk
[Term]
id: UBERON:0003901
name: horizontal myoseptum
def: "A connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses." [ZFA:0000671]
xref: ZFA:0000671
is_a: UBERON:0003037 ! septum
relationship: adjacent_to UBERON:0003895 ! hypaxial myotome region
relationship: adjacent_to UBERON:0003900 ! epaxial muscle
[Term]
id: UBERON:0003902
name: retinal neural layer
def: "The layer of nerve cells in the retina[XAO]. The part of the retina that contains neurons and photoreceptor cells[GO]." [GO:0003407, XAO:0003216]
comment: check MA
synonym: "neural layer of retina" EXACT [FMA:58628]
synonym: "neural retina" EXACT [XAO:0003216, ZFA:0000046]
synonym: "neural retinal epithelium" RELATED [MA:000027]
synonym: "neuroretina" EXACT [ZFA:0000046]
xref: BTO:0000929
xref: EHDAA2:0001253
xref: FMA:58628
xref: HOG:0000535
xref: MA:0000277
xref: ncithesaurus:Neural_Retina
xref: XAO:0003216
xref: ZFA:0000046
is_a: UBERON:0001781 ! implied link automatically realized ! layer of retina
relationship: develops_from UBERON:0005425
intersection_of: UBERON:0001781 ! layer of retina
intersection_of: develops_from UBERON:0005425 ! presumptive neural retina
relationship: induced_by UBERON:0005426 ! lens vesicle
[Term]
id: UBERON:0003903
name: bursa of Fabricius
def: "an epithelial and lymphoid organ that develops as a dorsal diverticulum of the proctadael region of the cloaca in birds. The luminal (interior) surface of the bursa is plicated with as many as 15 primary and 7 secondary plicae or folds. These plicae have hundreds of bursal follicles containing follicle-associated epithelial cells, lymphocytes, macrophages, and plasma cells. Lymphoid stem cells migrate from the fetal liver to the bursa during ontogeny. In the bursa, these stem cells acquire the characteristics of mature, immunocompetent B cells[WP]. The bursa is an organ found in birds involved in B cell differentiation[GO]." [GO:0048540, Wikipedia:Bursa_of_Fabricius]
xref: BTO:0001699
xref: GAID:1205
is_a: UBERON:0000062 ! organ
relationship: has_part UBERON:0003904 ! bursal plica
[Term]
id: UBERON:0003904
name: bursal plica
def: "Follicle containing part of bursa of Fabricius." [GOC:cjm]
synonym: "bursal fold" EXACT []
is_a: UBERON:0000064 ! organ part
relationship: has_part UBERON:0003905 ! bursal follicle
[Term]
id: UBERON:0003905
name: bursal follicle
def: "Follicle within the plicae of bursa of Fabricius." [GOC:cjm]
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0003906
name: cardiac jelly
def: "Portion of extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates." [ZFA:0001318]
xref: EHDAA:1271
xref: EHDAA:1279
xref: EHDAA:1922
xref: EHDAA:1930
xref: EHDAA:426
xref: EHDAA:442
xref: EHDAA:450
xref: EHDAA:458
xref: EHDAA:466
xref: EHDAA:474
xref: EHDAA:772
xref: EHDAA:780
xref: EHDAA:788
xref: EHDAA:800
xref: EHDAA:808
xref: EHDAA2:0000212
xref: HOG:0000936
xref: ncithesaurus:Cardiac_Jelly
xref: ZFA:0001318
is_a: UBERON:0000479 ! portion of tissue
relationship: adjacent_to UBERON:0002165 ! endocardium
relationship: adjacent_to UBERON:0002349 ! myocardium
[Term]
id: UBERON:0003907
name: left atrioventricular canal
xref: EHDAA2:0000935
xref: FMA:71123
is_a: UBERON:0002087 ! atrioventricular canal
[Term]
id: UBERON:0003908
name: right atrioventricular canal
xref: EHDAA2:0001719
xref: FMA:71122
is_a: UBERON:0002087 ! atrioventricular canal
[Term]
id: UBERON:0003909
name: sinusoid
def: "small blood vessel similar to a capillary but with a discontinuous endothelium. Sinusoids are found in the liver, lymphoid tissue, endocrine organs, and hematopoietic organs such as the bone marrow and the spleen. Sinusoids found within terminal villi of the placenta are not comparable to these; they possess a continuous endothelium and complete basal lamina[WP]." [Wikipedia:Sinusoid_(blood_vessel)]
comment: the WP def seems to fit FMA:63198 discontinuous sinusoid (undefined). ZFA has ZFA:0005261 sinusoidal blood vessel endothelium - but not sinusoidal blood vessel
synonym: "sinusoidal blood vessel" EXACT []
xref: FMA:63131
xref: ZFA:0005261
is_a: UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0003910
name: splenic sinusoid
def: "wide vessels in the spleen that drain into trabecular veins[WP]." [Wikipedia:Red_pulp#Sinusoids]
synonym: "sinusoid of red pulp" EXACT []
synonym: "sinusoid of red pulp of spleen" EXACT []
synonym: "sinusoid of spleen" EXACT []
synonym: "sinusoidal blood vessel of spleen" EXACT [OBOL:automatic]
synonym: "spleen sinusoid" EXACT []
synonym: "spleen sinusoidal blood vessel" EXACT []
synonym: "splenic sinus" EXACT []
xref: FMA:63199
xref: ncithesaurus:Splenic_Sinus
is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
is_a: UBERON:0003909 ! sinusoid
relationship: part_of UBERON:0002106
intersection_of: UBERON:0003909 ! sinusoid
intersection_of: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0003911
name: choroid plexus epithelium
def: "An epithelium that is part of a choroid plexus [Obol]." [OBOL:automatic]
synonym: "chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic]
synonym: "chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic]
synonym: "choroid plexus epithelial tissue" EXACT [OBOL:automatic]
synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "epithelial tissue of choroid plexus" EXACT [OBOL:automatic]
synonym: "epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "epithelium of choroid plexus" EXACT []
xref: FMA:242811
xref: MA:0000824
xref: ncithesaurus:Choroid_Plexus_Epithelium
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0005357 ! implied link automatically realized ! brain ependyma
relationship: part_of UBERON:0001886
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001886 ! choroid plexus
relationship: part_of UBERON:0001886 ! choroid plexus
[Term]
id: UBERON:0003912
name: chitinous tooth
def: "tooth-like structure composed of chitin." []
is_a: UBERON:0003913 ! tooth-like structure
[Term]
id: UBERON:0003913
name: tooth-like structure
def: "hard bony, calcareous, or chitinous organ found in the mouth or pharynx of an animal and used in procuring or masticating food." [GOC:cjm]
comment: see dermal denticle
synonym: "tooth-like organ" EXACT [GOC:cjm]
xref: HAO:0001019
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0003914
name: epithelial tube
def: "Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GO:0060562, PMID:12526790]
xref: AEO:0000114
xref: EHDAA2:0003114
is_a: UBERON:0000025 ! tube
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0003915
name: endothelial tube
def: "Any endothelium that has the quality of being cylindrical [Obol]." [OBOL:automatic]
is_a: UBERON:0000025 ! tube
is_a: UBERON:0001986 ! implied link automatically realized ! endothelium
is_a: UBERON:0003914 ! implied link automatically realized ! epithelial tube
[Term]
id: UBERON:0003916
name: fat pad
def: "an accumulation of adipose tissue[GO]. An accumulation of adipose tissue (fat cells) enclosed in fibrous tissue[BTO]." [BTO:0000444, GO:0060613]
comment: FMA says isa organ
synonym: "fat body" RELATED [FMA:58616]
xref: AAO:0000157
xref: BTO:0000444
xref: FMA:58616
xref: MA:0002481
xref: XAO:0003050
is_a: UBERON:0001013 ! adipose tissue
[Term]
id: UBERON:0003917
name: arthropod fat body
def: "an insect gland dorsal to the insect gut, with a function analogous to that of the vertebrate liver. It is a storage organ for fats, glycogen and protein and is a major site of intermediary metabolism." [GO:0007503]
synonym: "fat body" EXACT SENSU [FBbt:00005066]
xref: BTO:0000442
xref: FBbt:00005066
xref: GAID:1213
xref: MIAA:0000096
xref: TADS:0000321
xref: TGMA:0001856
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0003918
name: mesenchyme of kidney
def: "A mesenchyme that is part of a kidney [Obol]." [OBOL:automatic]
synonym: "kidney mesenchyme" EXACT []
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
relationship: part_of UBERON:0002113
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0003919
name: mesenchyme of adult kidney
def: "A mesenchyme that is part of an adult mammalian kidney [Obol]." [OBOL:automatic]
synonym: "adult mammalian kidney mesenchyme" EXACT [OBOL:automatic]
synonym: "kidney stroma" EXACT [GO:0072072]
synonym: "mesenchyme of adult mammalian kidney" EXACT [OBOL:automatic]
xref: FMA:70983
is_a: UBERON:0003918 ! implied link automatically realized ! mesenchyme of kidney
relationship: part_of UBERON:0000082
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000082 ! adult mammalian kidney
[Term]
id: UBERON:0003920
name: venous blood vessel
xref: FMA:86188
xref: MA:0000066
is_a: UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0004582 ! venous system
[Term]
id: UBERON:0003921
name: pancreas primordium
def: "embryonic structure that develops into pancreatic bud." [Wikipedia:Pancreatic_bud]
synonym: "pancreatic anlage" RELATED []
synonym: "pancreatic primordium" EXACT []
xref: EHDAA:2163
xref: EHDAA2:0001382
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Gray982.png/200px-Gray982.png
xref: ZFA:0000254
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: develops_from UBERON:0000925 ! endoderm
[Term]
id: UBERON:0003922
name: pancreatic bud
def: "embryonic structure that gives rise to the adult pancreas[CJM]. embryonic structure that is an outgrowth of the duodenum during human embryogenesis. Joins together to form the adult pancreas[WP]." [Wikipedia:Pancreatic_bud]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Gray982.png/200px-Gray982.png
xref: ncithesaurus:Pancreatic_Bud
xref: ZFA:0001390
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: develops_from UBERON:0003921 ! pancreas primordium
[Term]
id: UBERON:0003923
name: dorsal pancreatic bud
def: "pancreatic bud that gives rise to the accessory pancreatic duct." [Wikipedia:Pancreatic_bud]
synonym: "dorsal pancreatic anlage" RELATED []
synonym: "posterior pancreatic anlage" RELATED []
synonym: "posterior pancreatic bud" RELATED []
xref: HOG:0001428
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Gray982.png/200px-Gray982.png
xref: XAO:0000467
xref: ZFA:0001370
is_a: UBERON:0003922 ! pancreatic bud
[Term]
id: UBERON:0003924
name: ventral pancreatic bud
def: "pancreatic bud that gives rise to the major pancreatic duct." [Wikipedia:Pancreatic_bud]
synonym: "anterior pancreatic anlage" RELATED []
synonym: "anterior pancreatic bud" RELATED []
synonym: "ventral pancreatic anlage" RELATED []
xref: HOG:0001429
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/db/Gray982.png/200px-Gray982.png
xref: XAO:0001103
xref: ZFA:0001369
is_a: UBERON:0003922 ! pancreatic bud
[Term]
id: UBERON:0003925
name: retina photoreceptor layer inner segment
synonym: "photoreceptor inner segment layer" EXACT []
xref: HOG:0001172
xref: MA:0002471
xref: ZFA:0001465
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001787 ! photoreceptor layer of retina
[Term]
id: UBERON:0003926
name: retina photoreceptor layer outer segment
synonym: "photoreceptor outer segment layer" EXACT []
xref: HOG:0001173
xref: MA:0002472
xref: ZFA:0001466
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001787 ! photoreceptor layer of retina
[Term]
id: UBERON:0003927
name: macula lagena
def: "A macula that is part of a cochlea [Obol]." [OBOL:automatic]
synonym: "cochlea macula" EXACT [OBOL:automatic]
synonym: "cochlear part of bony labyrinth macula" EXACT [OBOL:automatic]
synonym: "lagena macula" EXACT [OBOL:automatic]
synonym: "macula of cochlea" EXACT [OBOL:automatic]
synonym: "macula of cochlear part of bony labyrinth" EXACT [OBOL:automatic]
synonym: "macula of lagena" EXACT [OBOL:automatic]
xref: ZFA:0000116
is_a: UBERON:0000054 ! implied link automatically realized ! macula
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001844
intersection_of: UBERON:0000054 ! macula
intersection_of: part_of UBERON:0001844 ! cochlea
[Term]
id: UBERON:0003928
name: digestive system duct
def: "A duct that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "duct of digestive system" EXACT [OBOL:automatic]
synonym: "duct of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "gastrointestinal system duct" EXACT [OBOL:automatic]
xref: ZFA:0005162
is_a: UBERON:0000058 ! implied link automatically realized ! duct
relationship: part_of UBERON:0001007
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0003929
name: gut epithelium
def: "An epithelium that is part of a digestive tract [Obol]." [OBOL:automatic]
synonym: "digestive tract epithelial tissue" EXACT [OBOL:automatic]
synonym: "digestive tract epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of digestive tract" EXACT [OBOL:automatic]
synonym: "epithelial tissue of gut" EXACT [OBOL:automatic]
synonym: "epithelial tissue of lower gastrointestinal tract" EXACT [OBOL:automatic]
synonym: "epithelium of digestive tract" EXACT [OBOL:automatic]
synonym: "epithelium of gut" EXACT [OBOL:automatic]
synonym: "epithelium of lower gastrointestinal tract" EXACT [OBOL:automatic]
synonym: "gut epithelial tissue" EXACT [OBOL:automatic]
synonym: "lower gastrointestinal tract epithelial tissue" EXACT [OBOL:automatic]
synonym: "lower gastrointestinal tract epithelium" EXACT [OBOL:automatic]
xref: BTO:0000956
xref: ncithesaurus:Gut_Epithelium
xref: XAO:0003200
xref: ZFA:0005123
is_a: UBERON:0004808 ! implied link automatically realized ! gastrointestinal system epithelium
relationship: part_of UBERON:0001555
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0003930
name: atrioventricular canal endocardium
def: "An endocardium that is part of an atrioventricular canal [Obol]." [OBOL:automatic]
synonym: "AV canal endocardium" EXACT [OBOL:automatic]
synonym: "endocardium of atrioventricular canal" EXACT [OBOL:automatic]
synonym: "endocardium of AV canal" EXACT [OBOL:automatic]
xref: ZFA:0001616
is_a: UBERON:0002165 ! implied link automatically realized ! endocardium
relationship: part_of UBERON:0002087
intersection_of: UBERON:0002165 ! endocardium
intersection_of: part_of UBERON:0002087 ! atrioventricular canal
[Term]
id: UBERON:0003931
name: diencephalic white matter
def: "A white matter of neuraxis that is part of a diencephalon [Obol]." [OBOL:automatic]
synonym: "between brain white matter" EXACT [OBOL:automatic]
synonym: "between brain white matter of neuraxis" EXACT [OBOL:automatic]
synonym: "between brain white substance" EXACT [OBOL:automatic]
synonym: "diencephalon white matter" EXACT [OBOL:automatic]
synonym: "diencephalon white matter of neuraxis" EXACT [OBOL:automatic]
synonym: "diencephalon white substance" EXACT [OBOL:automatic]
synonym: "interbrain white matter" EXACT [OBOL:automatic]
synonym: "interbrain white matter of neuraxis" EXACT [OBOL:automatic]
synonym: "interbrain white substance" EXACT [OBOL:automatic]
synonym: "mature diencephalon white matter" EXACT [OBOL:automatic]
synonym: "mature diencephalon white matter of neuraxis" EXACT [OBOL:automatic]
synonym: "mature diencephalon white substance" EXACT [OBOL:automatic]
synonym: "white matter of between brain" EXACT [OBOL:automatic]
synonym: "white matter of diencephalon" EXACT [OBOL:automatic]
synonym: "white matter of interbrain" EXACT [OBOL:automatic]
synonym: "white matter of mature diencephalon" EXACT [OBOL:automatic]
synonym: "white matter of neuraxis of between brain" EXACT [OBOL:automatic]
synonym: "white matter of neuraxis of diencephalon" EXACT [OBOL:automatic]
synonym: "white matter of neuraxis of interbrain" EXACT [OBOL:automatic]
synonym: "white matter of neuraxis of mature diencephalon" EXACT [OBOL:automatic]
synonym: "white substance of between brain" EXACT [OBOL:automatic]
synonym: "white substance of diencephalon" EXACT [OBOL:automatic]
synonym: "white substance of interbrain" EXACT [OBOL:automatic]
synonym: "white substance of mature diencephalon" EXACT [OBOL:automatic]
xref: FMA:83931
xref: ZFA:0000338
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
relationship: part_of UBERON:0001894
intersection_of: UBERON:0002316 ! white matter of neuraxis
intersection_of: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003932
name: chondrocranium cartilage
def: "A cartilage that is part of a chondrocranium [Obol]." [OBOL:automatic]
synonym: "cartilage of chondrocranium" EXACT [OBOL:automatic]
xref: ZFA:0001461
is_a: UBERON:0003933 ! implied link automatically realized ! cranial cartilage
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002241
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0003933
name: cranial cartilage
def: "A cartilage that is part of a cranium [Obol]." [OBOL:automatic]
synonym: "cartilage of cranium" EXACT [OBOL:automatic]
synonym: "cranium cartilage" EXACT [OBOL:automatic]
xref: ZFA:0001458
is_a: UBERON:0002418 ! implied link automatically realized ! cartilage
is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue
relationship: part_of UBERON:0003128
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0003934
name: mesenchyme pectoral fin
def: "A mesenchyme that is part of a pectoral fin [Obol]." [OBOL:automatic]
synonym: "mesenchyme of pectoral fin" EXACT [OBOL:automatic]
synonym: "pectoral fin mesenchyme" EXACT [OBOL:automatic]
xref: ZFA:0001000
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000151
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000151 ! pectoral fin
[Term]
id: UBERON:0003935
name: mesenchyme pelvic fin
def: "A mesenchyme that is part of a pelvic fin [Obol]." [OBOL:automatic]
synonym: "mesenchyme of pelvic fin" EXACT [OBOL:automatic]
synonym: "pelvic fin mesenchyme" EXACT [OBOL:automatic]
xref: ZFA:0001449
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000152
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000152 ! pelvic fin
[Term]
id: UBERON:0003936
name: postoptic commissure
xref: ZFA:0000059
is_a: UBERON:0001020 ! commissure
is_a: UBERON:0005970 ! implied link automatically realized ! brain commissure
relationship: part_of UBERON:0003931 ! diencephalic white matter
[Term]
id: UBERON:0003937
name: sex gland
def: "any of the organized aggregations of cells that function as secretory or excretory organs and are associated with reproduction" [MP:0000653]
synonym: "genitalia gland" EXACT [OBOL:automatic]
synonym: "gland of genitalia" EXACT [OBOL:automatic]
synonym: "gland of reproductive system" EXACT [OBOL:automatic]
synonym: "reproductive gland" EXACT [MA:0001751]
synonym: "reproductive system gland" EXACT [OBOL:automatic]
xref: MA:0001751
is_a: UBERON:0002530 ! gland
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000990
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0000990 ! reproductive system
[Term]
id: UBERON:0003938
name: sensory dissociation area
def: "the area of the parietal lobe that integrates tactile and visual stimuli" [MP:0000796]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001872 ! parietal lobe
[Term]
id: UBERON:0003939
name: transverse gyrus of Heschl
def: "the area of the temporal lobe concerned with hearing" [MP:0000803]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001393 ! auditory cortex
[Term]
id: UBERON:0003941
name: cerebellum anterior vermis
def: "the anterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located anterior to the primary fissure" [MP:0000867]
synonym: "anterior cerebellum vermis" EXACT [MA:0002969]
synonym: "vermis of anterior lobe of cerebellum" EXACT [FMA:72255]
xref: FMA:72255
xref: MA:0002969
is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex
is_a: UBERON:0002946 ! regional part of cerebellum
relationship: part_of UBERON:0002131 ! anterior lobe of cerebellum
[Term]
id: UBERON:0003942
name: somatic sensory system
def: "the neural tissue involved in the transmission of sensory signals" [MP:0000959]
comment: TODO - check
is_a: UBERON:0001032 ! implied link automatically realized ! sensory system
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000012
intersection_of: UBERON:0001032 ! sensory system
intersection_of: part_of UBERON:0000012 ! somatic nervous system
[Term]
id: UBERON:0003943
name: L4 dorsal root ganglion
def: "the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fourth lumbar vertebra" [MP:0001019]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000044 ! dorsal root ganglion
relationship: part_of UBERON:0002414 ! lumbar vertebra
[Term]
id: UBERON:0003944
name: L5 dorsal root ganglion
def: "the group of nerve cell bodies located on the dorsal spinal roots within the vertebral column at the level of the fifth lumbar vertebra" [MP:0001022]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000044 ! dorsal root ganglion
relationship: part_of UBERON:0002414 ! lumbar vertebra
[Term]
id: UBERON:0003945
name: somatic motor system
def: "the neural tissue involved in the transmission of motor signals" [MP:0001051]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000012 ! somatic nervous system
[Term]
id: UBERON:0003946
name: placenta labyrinth
def: "the placental layers where embryonic blood vessels are surrounded by trophoblast cells and maternal blood" [MP:0001716]
synonym: "labyrinthine layer" EXACT [GO:0060713]
synonym: "labyrinthine layer of placenta" EXACT [GO:0060713]
synonym: "placental labyrinth" EXACT []
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001987 ! placenta
[Term]
id: UBERON:0003947
name: brain ventricle/choroid plexus
def: "the brain ventricles or their associated choroid plexuses" [MP:0002200]
comment: TODO - check relationship between CP and BV. If this is part of then this class should be obsoleted
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
union_of: UBERON:0001886 ! choroid plexus
union_of: UBERON:0004086 ! brain ventricle
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003948
name: blood-air barrier
def: "the membrane between the capillary blood and alveolar air, comprised of the alveolar epithelium and the capillary epithelium and their adherent basement membranes and epithelial cell cytoplasm" [MP:0002324]
comment: TODO - alveolar lumen
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: adjacent_to UBERON:0000178 ! blood
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0003949
name: tubal tonsil
def: "the lymph tissue associated with the pharyngeal opening of the auditory tube" [MP:0002386]
xref: FMA:54975
is_a: UBERON:0001744 ! lymphoid tissue
relationship: part_of UBERON:0001735 ! tonsillar ring
[Term]
id: UBERON:0003950
name: inner ear canal
def: "the tubular ducts of the inner ear" [MP:0002729]
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0003951
name: ocular fundus
def: "the posterior concave interior of the eye, consisting of the retina, the choroid, the posterior segment of the sclera, the optic disk, and blood vessels, visible by an ophthalmoscope" [MP:0002864, Wikipedia:Fundus_(eye)]
comment: TODO - check relationships
synonym: "eye fundus" EXACT []
synonym: "fundus" EXACT [HP:0001098]
synonym: "fundus oculi" EXACT []
synonym: "fundus of eye" EXACT []
xref: EHDAA:4844
xref: EHDAA:9330
xref: EHDAA2:0000583
xref: EMAPA:17886
xref: EMAPA:18890
xref: GAID:908
xref: galen:FundusOculi
xref: ncithesaurus:Fundus
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001802 ! posterior segment of eyeball
[Term]
id: UBERON:0003952
name: anterior stroma
def: "the anterior segment of the lamellated connective tissue layer of the cornea" [MP:0003093]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001777 ! substantia propria of cornea
[Term]
id: UBERON:0003953
name: posterior stroma
def: "the posterior segment of the lamellated connective tissue layer of the cornea" [MP:0003094]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001777 ! substantia propria of cornea
[Term]
id: UBERON:0003954
name: squamo-parietal suture
def: "the articulation of the squamous portion of the temporal bones with the parietal bones" [MP:0003844]
xref: EMAPA:19228
is_a: UBERON:0003685 ! cranial suture
[Term]
id: UBERON:0003955
name: molar crown
def: "the part of a molar that is covered by enamel" [MP:0003932]
synonym: "molar tooth tooth crown" EXACT [OBOL:automatic]
synonym: "tooth crown of molar tooth" EXACT [OBOL:automatic]
xref: FMA:85301
is_a: UBERON:0003675 ! tooth crown
relationship: part_of UBERON:0003655
intersection_of: UBERON:0003675 ! tooth crown
intersection_of: part_of UBERON:0003655 ! molar tooth
relationship: part_of UBERON:0003655 ! molar tooth
[Term]
id: UBERON:0003956
name: aqueous drainage system
def: "the structures associated with drainage of the aqueous humor from the eye, that include the trabecular meshwork, Schlemm's canal, the uveoscleral network, and the aqueous veins" [MP:0005198]
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0001768 ! vascular layer of eyeball
[Term]
id: UBERON:0003957
name: Bruch's membrane
def: "A transparent, nearly structureless innermost layer of the choroid in contact with the pigmented layer of the retina. Bruch's membrane consists of five layers (from inside to outside): 1. the basement membrane of the retinal pigment epithelium; 2. the inner collagenous zone; 3. a central band of elastic fibers; 4. the outer collagenous zone; 5. the basement membrane of the choriocapillaris. The retinal pigment epithelium transports metabolic waste from the photoreceptors across Bruch's membrane to the choroid." [MP:0005239, Wikipedia:Bruch's_membrane]
comment: TODO - check FMA
synonym: "basal lamina of choroid" EXACT [FMA:58438]
synonym: "Bruch membrane" EXACT [GAID:914]
synonym: "Bruch's basal membrane" EXACT [FMA:58438]
synonym: "lamina basilis" EXACT [FMA:58438]
xref: FMA:58438
xref: GAID:914
is_a: UBERON:0000119 ! cell layer
relationship: part_of UBERON:0001776 ! choroid
[Term]
id: UBERON:0003958
name: long bone epiphyseal ossification zone
def: "The layer of the epiphyseal plate where new bone matrix is deposited" [MP:0006399]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002495 ! long bone
relationship: part_of UBERON:0002516 ! epiphyseal plate
[Term]
id: UBERON:0003959
name: rete testis
def: "the network of canals at the termination of the straight tubules in the mediastinum testis[MP]. Rete testis is an anastomosing network of delicate tubules located in the hilum of the testicle (mediastinum testis) that carries sperm from the seminiferous tubules to the vasa efferentia[WP]." [MP:0006416, Wikipedia:Rete_testis]
xref: EMAPA:18332
xref: FMA:19834
xref: GAID:399
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b5/Hodenschema.svg/200px-Hodenschema.svg.png
xref: ncithesaurus:Rete_Testis
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0005051 ! mediastinum testis
[Term]
id: UBERON:0003960
name: styloid process
def: "slender needle-like pointed projection that runs downward and slightly forward from the base of the inferior surface of the petrous portion of the temporal bone where it joins the tympanic portion; it gives attachment to the styloglossus, stylohyoid, and stylopharyngeus muscles and the stylohyoid and stylomandibular ligaments" [MP:0008023]
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0001678 ! temporal bone
[Term]
id: UBERON:0003961
name: cingulum
def: "the white matter fiber bundle that projects from the cingulate gyrus to the entorhinal cortex in the brain" [MP:0008232]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0003544 ! brain white matter
[Term]
id: UBERON:0003962
name: pterygopalatine ganglion
def: "the small parasympathetic ganglion that supplies nerve fibers to the lacrimal, nasal, palatine and pharyngeal glands" [MP:0008314, Wikipedia:Pterygopalatine_ganglion]
xref: FMA:6965
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray779.png/200px-Gray779.png
is_a: UBERON:0001808 ! parasympathetic ganglion
[Term]
id: UBERON:0003963
name: otic ganglion
def: "the ganglion that supplies nerve fibers to the parotid gland" [MP:0008315, Wikipedia:Otic_ganglion]
xref: FMA:6967
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray783.png/200px-Gray783.png
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001808 ! parasympathetic ganglion
[Term]
id: UBERON:0003964
name: prevertebral ganglion
def: "the sympathetic ganglia located in front of the vertebral column and are associated with the major branches of the abdominal aorta; these include the celiac, aorticorenal, superior and inferior mesenteric ganglia" [MP:0008316]
xref: FMA:5892
is_a: UBERON:0001806 ! sympathetic ganglion
[Term]
id: UBERON:0003965
name: sympathetic afferent fiber
def: "the fibers that conduct sensory nerve impulses from the viscera through the posterior dorsal roots into the spinal cord" [MP:0008319]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000013 ! sympathetic nervous system
[Term]
id: UBERON:0003966
name: gonial bone
def: "investing bone that lies on the surface of the malleus." [MP:0008380]
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003457 ! implied link automatically realized ! head bone
relationship: part_of UBERON:0001686 ! auditory ossicle
[Term]
id: UBERON:0003967
name: cutaneous elastic fiber
def: "the slender connective tissue fiber in the extracellular matrix of skin tissue that is composed of microfibrils and amorphous elastin and is characterized by great elasticity" [MP:0008418]
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0003968
name: peripheral lymph node
def: "the lymph nodes located outside the thoracic and abdominal cavities, such as the submandibular, prescapular, axillary, inguinal and popliteal lymph nodes" [MP:0008463]
is_a: UBERON:0000029 ! lymph node
[Term]
id: UBERON:0003969
name: spleen B cell follicle
def: "the area of the white pulp where the affinity maturation of B cells and the generation of memory B cells and plasma cells occur" [MP:0008470]
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001959 ! white pulp of spleen
[Term]
id: UBERON:0003970
name: placental labyrinth vasculature
def: "blood vessels of the layer of the placenta where embryonic and maternal blood vessels interdigitate" [MP:0008803]
synonym: "placenta vascular network" EXACT [OBOL:automatic]
synonym: "placenta vasculature" EXACT [OBOL:automatic]
synonym: "vascular network of placenta" EXACT [OBOL:automatic]
synonym: "vasculature of placenta" EXACT [OBOL:automatic]
is_a: UBERON:0002049 ! vasculature
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001987
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0001987 ! placenta
relationship: part_of UBERON:0001987 ! placenta
[Term]
id: UBERON:0003971
name: interfrontal bone
def: "a bone between the frontal bones in the skull; an extra bony plate within the anterior fontanelle that is not usually present" [MP:0008818]
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0003972
name: placenta junctional zone
def: "Fetally derived placental region that separates the maternal uterine tissue from the placenta labyrinth" [MP:0008957]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001987 ! placenta
[Term]
id: UBERON:0003973
name: nasal concha of ethmoid bone
def: "One of the conchae of the ethmoid bone, which occupy the caudal part of the nasal fossae and form the lateral and superior portions of the turbinate bones in mammals" [MP:0008971]
comment: Note that FMA considers nasal concha and nasal concha of ethmoid bone to be synonymous. We disambiguate these here
synonym: "ethmo-turbinate" EXACT []
synonym: "ethmoturbinate" EXACT [MP:0008971]
synonym: "nasal turbinate of ethmoid bone" EXACT []
synonym: "turbinate of ethmoid bone" EXACT []
xref: FMA:57456
is_a: UBERON:0001762 ! implied link automatically realized ! nasal concha
relationship: part_of UBERON:0001679
intersection_of: UBERON:0001762 ! nasal concha
intersection_of: part_of UBERON:0001679 ! ethmoid
[Term]
id: UBERON:0003974
name: cranial vagina
def: "the upper third of the female reproductive canal located between the uterus and the vulva." [MP:0009077]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0003975
name: internal female genitalia
def: "the internal feminine genital organs, including the ovaries, uterine tubes, uterus, uterine cervix, and vagina." [MP:0009209]
synonym: "female internal genitalia" EXACT [FMA:45654]
synonym: "internal genitalia of female reproductive system" EXACT [OBOL:automatic]
xref: FMA:45654
is_a: UBERON:0003134 ! implied link automatically realized ! female reproductive organ
is_a: UBERON:0004175 ! implied link automatically realized ! internal reproductive organ
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000474
intersection_of: UBERON:0004175 ! internal reproductive organ
intersection_of: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0003976
name: saccule duct
def: "the saccular portion of the utriculosaccular duct that normally extends from the sacculus to the endolymphatic duct" [MP:0009259]
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth
[Term]
id: UBERON:0003977
name: utricle duct
def: "the utricular portion of the utriculosaccular duct that normally extends from the utriculus to the endolymphatic duct" [MP:0009260]
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth
[Term]
id: UBERON:0003978
name: valve
xref: EHDAA:1892
xref: EHDAA:4406
xref: EHDAA2:0002165
xref: galen:Valve
xref: OpenCyc:Mx4rvqiwE5wpEbGdrcN5Y29ycA
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003979
name: utricle valve
def: "the utriculo-endolymphatic (UE) valve which is located in the antero-inferior wall of the utricle at the orifice of the utricular duct and serves to regulate endolymph volume in the endolymphatic sac, the utricle and the canals" [MP:0009261]
is_a: UBERON:0003978 ! valve
relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth
[Term]
id: UBERON:0003980
name: cerebellum fissure
def: "the deep furrows which divide the lobules of the cerebellum, including the postcentral, primary and secondary furrows" [MP:0009267]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0003981
name: primordial ovarian follicle
def: "primordial follicles are indiscernible to the naked eye and develop to primary, secondary, and finally mature vesicular follicles" [MP:0009361]
xref: MA:0001710
is_a: UBERON:0001305 ! ovarian follicle
[Term]
id: UBERON:0003982
name: mature ovarian follicle
def: "." [MP:0009364]
xref: BTO:0000389
xref: MA:0001709
xref: ZFA:0001264
is_a: UBERON:0001305 ! ovarian follicle
relationship: develops_from UBERON:0003981 ! primordial ovarian follicle
[Term]
id: UBERON:0003983
name: conus arteriosus
def: "a conical pouch formed from the upper and left angle of the right ventricle in the chordate heart, from which the pulmonary artery arises[WP]. the anteriosuperior, smooth-walled portion of the cavity of the right ventricle, beginning at the supraventricular crest and terminates in the pulmonary trunk[MP]." [MP:0009464, Wikipedia:Conus_arteriosus]
synonym: "infundibulum" BROAD [Wikipedia:Conus_arteriosus]
xref: EHDAA2:0000828
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/46/Gray492.png/200px-Gray492.png
is_a: UBERON:0004151 ! cardiac chamber
relationship: part_of UBERON:0002080 ! right ventricle
[Term]
id: UBERON:0003984
name: uterine tube infundibulum
def: "the funnel-like expansion of the abdominal extremity of the uterine tube" [MP:0009466, Wikipedia:Infundibulum_of_uterine_tube]
xref: FMA:18307
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/66/Illu_cervix.jpg/200px-Illu_cervix.jpg
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0003889 ! fallopian tube
[Term]
id: UBERON:0003985
name: major sublingual duct
def: "the duct that drains the anterior portion of the sublingual gland and opens at the sublingual papilla" [MP:0009528]
xref: FMA:59986
is_a: UBERON:0000058 ! duct
is_a: UBERON:0003928 ! implied link automatically realized ! digestive system duct
relationship: part_of UBERON:0001838 ! sublingual duct
[Term]
id: UBERON:0003986
name: minor sublingual duct
def: "the 8-20 small ducts that open into the mouth on the surface of the sublingual fold" [MP:0009529]
xref: FMA:59987
is_a: UBERON:0000058 ! duct
is_a: UBERON:0003928 ! implied link automatically realized ! digestive system duct
relationship: part_of UBERON:0001838 ! sublingual duct
[Term]
id: UBERON:0003987
name: Hassall's corpuscle
def: "the small spherical bodies of epithelial cells found in the medulla of the thymus, that are arranged in a concentric pattern around clusters of degenerating lymphocytes, eosinophils and macrophages" [MP:0009539]
xref: MA:0000772
xref: ncithesaurus:Hassall_s_Corpuscle
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002124 ! medulla of thymus
relationship: part_of UBERON:0003846 ! thymus epithelium
[Term]
id: UBERON:0003988
name: thymus corticomedullary boundary
def: "the dense region demarcating the thymus medulla from the surrounding cortex that is characterized by numerous blood vessels (predominantly arterioles) with some perivascular connective tissue, mature and immature T lymphocytes, dendritic cells, variable numbers of perivascular B-lymphocytes and plasma cells; site of entry of bone marrow stem cells and exit of mature, functional T cells" [MP:0009543]
is_a: UBERON:0000015 ! anatomical boundary
relationship: part_of UBERON:0002125 ! lobule of thymus
[Term]
id: UBERON:0003989
name: medulla oblongata anterior median fissure
def: "the longitudinal groove in the midline of the anterior aspect of the medulla oblongata" [MP:0009680]
xref: FMA:83734
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0003990
name: spinal cord motor column
def: "the subclasses of motor neurons which are organized into longitudinally oriented columns that occupy distinct and, in some cases, discontinuous domains along the rostrocaudal axis of the spinal cord; motor neurons within a single column send their axons to a common peripheral target" [MP:0009685]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0003991
name: fourth ventricle median aperture
def: "the large midline opening of the posterior inferior part of the roof of the fourth ventricle that connects the fourth ventricle to the posterior cerebromedullary cistern and the spinal cord" [MP:0009802, Wikipedia:Median_aperture]
synonym: "arachnoid forament" RELATED [MA:0002947]
synonym: "foramen of Magendie" EXACT [FMA:75015]
synonym: "foramen of Majendie" EXACT [FMA:75015]
synonym: "fourth ventricle median aperture" EXACT [MA:0002947]
synonym: "median aperture" BROAD [MP:0009802]
synonym: "median aperture of fourth ventricle" EXACT [FMA:75015]
xref: FMA:75015
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b9/Gray708.svg/200px-Gray708.svg.png
xref: MA:0002947
is_a: UBERON:0004668 ! fourth ventricle aperture
[Term]
id: UBERON:0003992
name: fourth ventricle lateral aperture
def: "the two lateral openings of the fourth ventricle into the subarachnoid space at the cerebellopontine angle" [MP:0009803]
synonym: "foramen of Key-Retzius" EXACT [FMA:78473]
synonym: "foramen of Luschka" EXACT [FMA:78473]
synonym: "foramen of Retzius" EXACT [FMA:78473]
synonym: "lateral aperture" BROAD [MP:0009803]
synonym: "lateral aperture of fourth ventricle" EXACT [FMA:78473]
xref: FMA:78473
xref: MA:0002946
is_a: UBERON:0004668 ! fourth ventricle aperture
[Term]
id: UBERON:0003993
name: interventricular foramen
def: "the paired channels that connect the lateral and third ventricles and allows cerebrospinal fluid produced in the lateral ventricles to flow into the third ventricles" [MP:0009804]
xref: FMA:75351
xref: ncithesaurus:Interventricular_Foramen
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002286 ! third ventricle
[Term]
id: UBERON:0003994
name: pelvic ligament
def: "the dorsal sacroiliac, the sacrotuberal and/or the iliolumbar ligaments associated with the bony ring formed by the pair of hip bones fused at the symphysis and their firm articulation with the sacrum" [MP:0009807]
xref: MA:0002948
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003594 ! implied link automatically realized ! pelvis connective tissue
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0003995
name: subarcuate fossa
def: "the irregular depression found on the posterior inner surface of the petrous portion of the temporal bone just below its crest and above and lateral to the internal acoustic meatus[MP]. In the temporal bone, above and between the aquæductus vestibuli is an irregular depression which lodges a process of the dura mater and transmits a small vein and the subarcuate artery[1] a branch of the internal auditory artery, which is an end artery that supplies blood to the inner ear ; in the infant this depression is represented by a large fossa, the subarcuate fossa, which extends backward as a blind tunnel under the superior semicircular canal. It is extensive in most primates (except for great apes) and nearly all mammals. In these animals, the subarcuate fossa houses a part of the cerebellum, the petrosal lobe[WP]." [MP:0009822]
xref: FMA:56418
is_a: UBERON:0004704 ! bone fossa
relationship: part_of UBERON:0001678 ! temporal bone
[Term]
id: UBERON:0003996
name: arcus anterior
alt_id: UBERON:0005209
def: "The anterior arch of the atlas forms about one-fifth of the ring of the atlas: its anterior surface is convex, and presents at its center the anterior tubercle for the attachment of the Longus colli muscles; posteriorly it is concave, and marked by a smooth, oval or circular facet (fovea dentis), for articulation with the odontoid process (dens) of the axis[WP]. The arch that connects the lateral masses of the atlas anteriorly and articulates with the anterior articular facet of the dens of the axis[MP]." [MP:0009879, Wikipedia:Anterior_arch_of_atlas]
synonym: "anterior arch of atlas" EXACT [MA:0002954]
synonym: "arcus anterior atlantis" EXACT [MA:0002954]
synonym: "cervical vertebra 1 arcus anterior" EXACT [MA:0002954]
xref: FMA:23976
xref: MA:0002954
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0001092 ! atlas
[Term]
id: UBERON:0003997
name: hyoid bone greater horn
def: "the larger and more lateral of the paired processes on either side of the hyoid bone" [MP:0009913]
xref: FMA:59496
xref: MA:0002959
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001685 ! hyoid bone
[Term]
id: UBERON:0003998
name: hyoid bone lesser horn
def: "shorter and more medial of the paired processes on either side of the hyoid bone" [MP:0009914]
xref: FMA:59499
xref: MA:0002960
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001685 ! hyoid bone
[Term]
id: UBERON:0003999
name: hyoid bone body
def: "the main curve of the hyoid bone, from which the horns extend" [MP:0009917, Wikipedia:Body_of_hyoid_bone]
xref: FMA:59495
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1f/Gray186.png/200px-Gray186.png
xref: MA:0002958
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001685 ! hyoid bone
[Term]
id: UBERON:0004000
name: meibomian gland acinus
def: "." [MP:0009935]
is_a: UBERON:0001818 ! tarsal gland
[Term]
id: UBERON:0004001
name: olfactory bulb layer
def: "." [MP:0009946]
comment: TODO - check isa parentage
xref: NIF_GrossAnatomy:nlx_anat_20090402
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0002264 ! olfactory bulb
[Term]
id: UBERON:0004002
name: cerebellum posterior lobe
def: "the region of the cerebellum that is posterior to the primary fissure and anterior to the posteriolateral fissure" [MP:0009962]
synonym: "posterior lobe of cerebellum" EXACT []
xref: FMA:72252
xref: MA:0002964
xref: NIF_GrossAnatomy:birnlex_911
is_a: UBERON:0005293 ! cerebellum lobe
[Term]
id: UBERON:0004003
name: cerebellum hemisphere lobule
def: "the region of a cerebellar lobule that resides in either of the lateral sections of the cerebellum outside the vermis; in mammals, the vermis portion of the cerebellum has a foliation pattern along the AP axis that is distinct from the lateral cerebellar hemispheres" [MP:0009963]
comment: TODO - define as a region overlapping
synonym: "cerebellar hemisphere lobule" EXACT []
synonym: "lobule of hemisphere of cerebellum" EXACT [FMA:83880]
xref: FMA:83880
xref: MA:0002967
is_a: UBERON:0004004 ! implied link automatically realized ! cerebellum lobule
relationship: part_of UBERON:0002245
intersection_of: UBERON:0004004 ! cerebellum lobule
intersection_of: part_of UBERON:0002245 ! hemisphere of cerebellum
[Term]
id: UBERON:0004004
name: cerebellum lobule
def: "one of the the ten gyri of the cerebellar cortex" [MP:0009964]
xref: MA:0002966
xref: NIF_GrossAnatomy:birnlex_1084
is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex
is_a: UBERON:0002946 ! regional part of cerebellum
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0004005
name: cerebellum lateral hemisphere
def: "the most lateral paired regions of the cerebellum; the lateral zone receives input from the parietal cortex via pontocerebellar mossy fibers regarding the location and position of the body and integrates input signals with indications of muscle activity" [MP:0009965]
is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex
is_a: UBERON:0002946 ! regional part of cerebellum
relationship: part_of UBERON:0002245 ! hemisphere of cerebellum
[Term]
id: UBERON:0004006
name: cerebellum intermediate hemisphere
def: "the paired regions of the cerebellar hemisphere that lie adjacent to the vermis and are between the vermis and lateral regions of the hemispheres; it receives input from the corticopontocerebellar fibers that originate from the motor cortex, and also receives sensory feedback from the muscles; these signals are integrated by this region, to coordinate muscle activity with motor inputs" [MP:0009966]
is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex
is_a: UBERON:0002946 ! regional part of cerebellum
relationship: part_of UBERON:0002245 ! hemisphere of cerebellum
[Term]
id: UBERON:0004007
name: cerebellum deep nucleus
def: "the gray matter nuclei located in the center of the cerebellum, embedded in the white matter, which receive inhibitory (GABAergic) inputs from Purkinje cells in the cerebellar cortex and excitatory (glutamatergic) inputs from mossy fiber pathways; all output fibers of the cerebellum originate from the these nuclei[MP]" [MP:0009979, Wikipedia:Deep_cerebellar_nuclei]
comment: TODO - split nucleus from nuclear complex/nuclei?
xref: FMA:72249
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/23/Gray707.png/200px-Gray707.png
xref: MA:0000203
xref: NIF_GrossAnatomy:birnlex_1568
is_a: UBERON:0002946 ! regional part of cerebellum
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004008
name: cerebellar plate
def: "the embryonic pseudostratified epithelium of the fourth cerebellar ventricle that eventually forms the vermis and ventral neuroepithelium" [MP:0000856]
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004009
name: cerebellum posterior vermis
def: "the posterior portion of the narrow middle zone between the two hemispheres of the cerebellum that is located posterior to the primary fissure" [MP:0000869]
synonym: "posterior cerebellum vermis" EXACT []
synonym: "vermis of posterior lobe of cerebellum" EXACT []
xref: FMA:72259
xref: MA:0002970
xref: NIF_GrossAnatomy:nlx_anat_20081240
is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex
is_a: UBERON:0002946 ! regional part of cerebellum
relationship: part_of UBERON:0004002 ! cerebellum posterior lobe
[Term]
id: UBERON:0004010
name: primary muscle spindle
def: "the sensory organ in muscle; involved in the stretch reflex and sensitive to stretch velocity" [MP:0000991]
is_a: UBERON:0003718 ! muscle spindle
[Term]
id: UBERON:0004011
name: secondary muscle spindle
def: "the sensory organ in muscle; involved in the stretch reflex and not sensitive to stretch velocity" [MP:0000994]
is_a: UBERON:0003718 ! muscle spindle
[Term]
id: UBERON:0004012
name: golgi tendon organ
def: "the sensory organ in muscle that is involved in regulating muscle tension" [MP:0000999]
xref: FMA:83608
xref: ncithesaurus:Golgi_Tendon_Organ
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0004013
name: egg cylinder
def: "the transient cup-like structure of the epiblast that consists of a single layer of embryonic cells" [MP:0003085]
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0002532 ! epiblast
[Term]
id: UBERON:0004014
name: labia minora
def: "The labia minora or nymphae are two longitudinal cutaneous folds on the human vulva. They are situated between the labia majora, and extend from the clitoris obliquely downward, laterally, and backward on either side of the vulval vestibule, ending between bottom of the vulval vestibule and the labia majora. In the virgin the posterior ends of the labia minora are usually joined across the middle line by a fold of skin, named the frenulum labiorum pudendi or fourchette. Labia minora may vary widely in size from woman to woman. On the front, each labium minus (nympha) divides into two portions: the upper division passes above the clitoris to meet the labium minus of the opposite side—which may not be equal in size—forming a fold which overhangs the glans clitoridis; this fold is named the preputium clitoridis. The lower division passes beneath the glans clitoridis and becomes united to its under surface, forming, with the labium minus of the opposite side—which also may not be equal in size—the frenulum clitoridis. On the opposed surfaces of the labia minora are numerous sebaceous follicles. [WP,unvetted]." [Wikipedia:Labia_minora]
synonym: "labium minora" EXACT []
synonym: "labium minorum" EXACT []
synonym: "labium minus" EXACT [FMA:20374]
xref: FMA:20374
xref: galen:LabiaMinora
xref: MA:0002845
is_a: UBERON:0004084 ! labium
[Term]
id: UBERON:0004015
name: embryonic-extraembryonic boundary
def: "the normal development /maintenance of the connection between the embryo proper and extraembryonic tissues" [MP:0003890]
is_a: UBERON:0000015 ! implied link automatically realized ! anatomical boundary
relationship: adjacent_to UBERON:0000478
relationship: adjacent_to UBERON:0002050
intersection_of: UBERON:0000015 ! anatomical boundary
intersection_of: adjacent_to UBERON:0000478 ! extraembryonic structure
intersection_of: adjacent_to UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0004016
name: dermatome
def: "the mesoderm that is derived from the somite that is fated to become the dermis[MP. An area of skin that is mainly supplied by a single spinal nerve[WP]" [MP:0003940]
comment: TODO. check developmental relations. Wikipedia refers to a different class? FMA:80301 dermatome segment of skin
xref: EHDAA:1719
xref: EHDAA:1725
xref: EHDAA:1731
xref: EHDAA:1737
xref: ncithesaurus:Dermatome
xref: XAO:0000220
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: develops_from UBERON:0002329 ! somite
relationship: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0004017
name: periocular mesenchyme
def: "the mesenchymal cells that give rise to the corneal endothelium, corneal stroma, sclera, iris stroma, ciliary muscle, ciliary stroma, and trabecular meshwork of the eye" [MP:0004054]
is_a: UBERON:0003104 ! mesenchyme
[Term]
id: UBERON:0004018
name: primitive node
def: "the regional thickening of cells at the rostral tip of the vertebrate primitive streak through which gastrulating cells migrate anteriorally to form tissues in the future head and neck; this region organizes the formation of the three embryonic layers and establishes the longitudinal axis and the polarity of the embryo" [MP:0004066]
comment: TODO - merge with primitive knot
xref: EHDAA:549
xref: ncithesaurus:Primitive_Node
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0004341 ! primitive streak
[Term]
id: UBERON:0004019
name: baroreceptor
def: "the sensory nerve endings in the wall of the atria of the heart, vena cava, aortic arch and carotid sinus that are sensitive to changes in blood pressure" [MP:0004118]
xref: FMA:85601
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0004020
name: embryonic cilium
def: "the earliest cilia of the mouse embryo found on the cells of the embryonic node" [MP:0004131]
comment: TODO
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0004021
name: spongiotrophoblast layer
def: "the structure of the outer structural layer of the rodent placenta" [MP:0004255]
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001987 ! placenta
[Term]
id: UBERON:0004022
name: embryonic neuroepithelium
def: "the epithelial cell layer that lines the neural tube and develops into the nervous system and into the neural crest cells" [MP:0004261]
synonym: "neurepithelium" BROAD [BTO:0000314]
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0004023
name: ganglionic eminence
def: "the transient proliferative population of neurons that expands exponentially during late prenatal development; it is a continuous germinal zone distinct from the ventricular zone that surrounds the brain ventricles[MP]. The eminences are found in the ventral part of the telencephalon, where they form bulges in the ventricles. These bulges develop into the basal ganglia.[1] They also contribute significantly in building up the GABAergic cortical cell population[WP]." [MP:0004274, Wikipedia:Ganglionic_eminence]
synonym: "embryonic subventricular zone" EXACT []
synonym: "embryonic/fetal subventricular zone" EXACT []
synonym: "fetal subventricular zone" EXACT []
synonym: "GE" BROAD []
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0004024
name: medial ganglionic eminence
def: "a distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the neocortex; however, hippocampal neurons, thalamus, septum and olfactory bulb neurons are also partly derived from the MGE." [MP:0004276]
synonym: "MGE" BROAD []
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
relationship: part_of UBERON:0004023 ! ganglionic eminence
[Term]
id: UBERON:0004025
name: lateral ganglionic eminence
def: "a distinct elevation of a transient proliferating cell mass of the fetal subventricular zone; this mass contributes most of its cells to the striatum; however, neocortex, thalamus, septum and olfactory bulb neurons are also partly derived from the LGE" [MP:0004277]
comment: TODO fetal subventricular zone
synonym: "LGE" BROAD []
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
relationship: part_of UBERON:0004023 ! ganglionic eminence
[Term]
id: UBERON:0004026
name: caudal ganglionic eminence
def: "the caudally located, distinct elevation of a transient proliferating cell mass of the fetal subventricular zone, located adjacent to the lateral ventricle" [MP:0004278]
synonym: "CGE" BROAD []
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
relationship: part_of UBERON:0004023 ! ganglionic eminence
[Term]
id: UBERON:0004027
name: chorionic plate
def: "the portion of the chorion from which chorionic villi develop that establish a connection with the endometrium, giving rise to the fetal portion of the mature placenta" [MP:0004560]
xref: BTO:0002879
xref: ncithesaurus:Chorionic_Plate
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0003124 ! chorion
[Term]
id: UBERON:0004028
name: trabecular meshwork
def: "the pore-like structure surrounding the entire circumference of the anterior chamber through which aqueous humor circulates" [MP:0005203]
xref: GAID:897
xref: ncithesaurus:Trabecular_Meshwork
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0003956 ! aqueous drainage system
relationship: surrounds UBERON:0001766 ! anterior chamber of eyeball
[Term]
id: UBERON:0004029
name: canal of Schlemm
def: "the vascular structure encircling the anterior chamber of the eye, through which the aqueous humor is returned to the blood circulation" [MP:0005204]
synonym: "Schlemm's canal" EXACT []
xref: FMA:51873
xref: ncithesaurus:Canal_of_Schlemm
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
relationship: part_of UBERON:0003956 ! aqueous drainage system
[Term]
id: UBERON:0004030
name: aqueous vein
def: "this vessel that receives aqueous humor from the sinus venosus sclerae (canal of Schlemm)" [MP:0005207]
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
relationship: part_of UBERON:0003956 ! aqueous drainage system
[Term]
id: UBERON:0004031
name: ectomesenchyme
def: "mesenchymal cells derived from neural crest cells that contribute to development of the hard and soft tissue in the head and neck, including the branchial arches." [MP:0006302]
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0002342 ! neural crest
[Term]
id: UBERON:0004032
name: podocyte slit diaphragm
def: "the thin membrane that covers the podocyte filtration slit which allows small molecules such as water, glucose, and ionic salts to pass through while retaining larger macromolecules in the bloodstream" [MP:0008060]
comment: TODO - submit to GO
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0004033
name: podocyte slit junction
def: "the gaps between the interdigitated foot processes of the podocyte" [MP:0008062]
comment: TODO - submit to GO
is_a: UBERON:0000061 ! anatomical structure
relationship: adjacent_to UBERON:0004355 ! podocyte foot process
[Term]
id: UBERON:0004034
name: cutaneous microfibril
def: "the fiber-like strand of fibrillin that forms the scaffold of the cutaneous elastic fibers found in the extracellular matrix of the skin" [MP:0008419]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0003967 ! cutaneous elastic fiber
[Term]
id: UBERON:0004035
name: subplate
def: "the transient outer neural tube region that contains the first generated post-mitotic neurons that receive synaptic input from thalamic axons and in turn project axons to the developing cortical plate" [MP:0008440]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0004036
name: retinal cone cell inner segment
def: "the retinal cone cell region which contains the machinery of the cell (mitochondria, golgi, endoplasmic reticulum, etc) and where opsin molecules are assembled and passed to be part of the outer segment region" [MP:0008448]
is_a: UBERON:0001781 ! layer of retina
is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer
relationship: part_of UBERON:0003925 ! retina photoreceptor layer inner segment
[Term]
id: UBERON:0004037
name: retinal cone cell outer segment
def: "the retinal cone cell region in which the visual pigment rhodopsin is in invaginations of the cell membrane" [MP:0008449]
is_a: UBERON:0001781 ! layer of retina
is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer
relationship: part_of UBERON:0003926 ! retina photoreceptor layer outer segment
[Term]
id: UBERON:0004038
name: retinal rod cell inner segment
def: "the retinal rod cell region which contains the machinery of the cell (mitochondria, golgi, endoplasmic reticulum, etc) and where opsin molecules are assembled and passed to be part of the outer segment region" [MP:0008455]
is_a: UBERON:0001781 ! layer of retina
is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer
relationship: part_of UBERON:0003925 ! retina photoreceptor layer inner segment
[Term]
id: UBERON:0004039
name: retinal rod cell outer segment
def: "the retinal rod cell region which contains stacks of membranous discs separate from the outer cell membrane that are rich in the visual pigment rhodopsin" [MP:0008456]
is_a: UBERON:0001781 ! layer of retina
is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer
relationship: part_of UBERON:0003926 ! retina photoreceptor layer outer segment
[Term]
id: UBERON:0004040
name: cortical intermediate zone
def: "the region of the developing mammalian cortex that extends between the ventricular zone and the cortical plate (CP); normally, the IZ is a region of tangential migration of cells, and at midgestation, the lower part of the IZ develops into the subventricular zone" [MP:0008457]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0004041
name: spleen primary B follicle
def: "the nodules of small undifferentiated B lymphocytes and follicular dendritic cells located in the spleen white pulp" [MP:0008471]
is_a: UBERON:0003969 ! spleen B cell follicle
[Term]
id: UBERON:0004042
name: spleen secondary B follicle
def: "the nodules of antigen-activated, differentiating B cells, follicular dendritic cells, antigen-presenting T cells and macrophages in the spleen white pulp" [MP:0008472]
is_a: UBERON:0003969 ! spleen B cell follicle
[Term]
id: UBERON:0004043
name: semicircular canal ampulla
def: "the spherical enlargement at the base of each semicircular canal where they connect with the utricle, containing the crista ampullaris which detects movement of the fluid within the canals" [MP:0008488, Wikipedia:Osseous_ampullae]
comment: TODO check duct vs canal. Also check FMA - has many subtypes of semicircular canal such as 'ampulla of anterior semicircular canal'
synonym: "semicircular duct ampulla" RELATED [MA:0002770]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/65/Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg/200px-Vestibular_system%27s_semicircular_canal-_a_cross-section.jpg
xref: MA:0002770
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001840 ! semicircular canal
[Term]
id: UBERON:0004044
name: anterior visceral endoderm
def: "the extraembryonic tissue that is responsible for the proper orientation of the anterior-posterior axis of the embryo and for appropriate patterning of adjacent embryonic tissue" [MP:0008533]
comment: see also primitive streak
xref: BTO:0003361
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: develops_from UBERON:0000925 ! endoderm
[Term]
id: UBERON:0004045
name: tailgut
def: "the extension of the hindgut of the primitive digestive tube of the embryo, caudal to the location of the anal opening" [MP:0008787]
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0001046 ! hindgut
[Term]
id: UBERON:0004046
name: anterior definitive endoderm
def: "the mesendoderm which first migrates from the node and which gives rise to the gut" [MP:0008926]
comment: TODO - check
is_a: UBERON:0000089 ! hypoblast
[Term]
id: UBERON:0004047
name: basal cistern
def: "the enclosed space where the arachnoid membrane stretches between the two temporal lobes and encloses the cerebral peduncles including the structures contained in the interpeduncular fossa" [MP:0009029]
xref: EMAPA:19056
xref: EMAPA:19149
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002362 ! arachnoid mater
[Term]
id: UBERON:0004048
name: pontine cistern
def: "the space located on lateral aspects of the pons at the junction with the celebellum" [MP:0009030]
xref: EMAPA:18212
xref: FMA:83719
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0004049
name: cerebellomedullary cistern
def: "the largest of the subarachnoid spaces betweeen the cerebellum and the medulla oblongata" [MP:0009031]
xref: FMA:74517
is_a: UBERON:0000315 ! subarachnoid space
[Term]
id: UBERON:0004050
name: subarachnoid cistern
def: "the widening portions of the subarachnoid space within the cranium where the arachnoid bridges over a depression on the surface of the brain" [MP:0009032]
xref: FMA:83717
xref: ncithesaurus:Subarachnoid_Cistern
is_a: UBERON:0000315 ! subarachnoid space
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0004051
name: lateral cerebellomedullary cistern
def: "the space between the cerebellum and the lateral aspect of the medulla" [MP:0009034]
xref: FMA:83722
is_a: UBERON:0000464 ! anatomical space
relationship: adjacent_to UBERON:0002037 ! cerebellum
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0004052
name: quadrigeminal cistern
def: "the enclosed space extending forward between the corpus callosum and the thalamus that contains the internal cerebral veins" [MP:0009035]
xref: FMA:74511
xref: ncithesaurus:Quadrigeminal_Cistern
is_a: UBERON:0000464 ! anatomical space
relationship: adjacent_to UBERON:0002336 ! corpus callosum
[Term]
id: UBERON:0004053
name: external male genitalia
def: "the external masculine genital organs, including the penis and scrotum" [MP:0009199]
xref: FMA:45642
is_a: UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0004054
name: internal male genitalia
def: "the internal masculine genital organs, including the testes, epididymides, deferent ducts, seminal vesicles, prostate, ejaculatory ducts, and bulbourethral glands" [MP:0009205]
xref: FMA:45655
is_a: UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0004055
name: primitive pit
def: "the small depression in the primitive streak that is caudal to the primitive node where the cells of the epiblast initially begin to invaginate during early embryogenesis" [MP:0009329]
comment: TODO - check
xref: EHDAA:551
xref: EHDAA2:0001521
xref: ncithesaurus:Primitive_Pit
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0004341 ! primitive streak
[Term]
id: UBERON:0004056
name: primitive groove
def: "the shallow valley that extends along the length of the primitive streak" [MP:0009330]
comment: TODO - check
xref: EHDAA:547
xref: EHDAA2:0001511
xref: ncithesaurus:Primitive_Groove
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0004341 ! primitive streak
[Term]
id: UBERON:0004057
name: skeletal muscle fiber triad
def: "the skeletal muscle fiber structure comprised of the transverse tubule and the two associated terminal cisternae; each fiber normally has thousands of triads" [MP:0009411]
is_a: UBERON:0001134 ! skeletal muscle tissue
[Term]
id: UBERON:0004058
name: biliary ductule
def: "the excretory ducts of the liver that connect the interlobular ductules to the right or left hepatic duct" [MP:0009494]
is_a: UBERON:0000058 ! duct
is_a: UBERON:0003928 ! implied link automatically realized ! digestive system duct
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: adjacent_to UBERON:0001175 ! common hepatic duct
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0004059
name: spinal cord medial motor column
def: "the subclasses of motor neurons which project their axons to axial muscles that lie close to the vertebral column; motor neurons in the lateral subdivision of the MMC project their axons to body wall muscles" [MP:0009686]
is_a: UBERON:0003990 ! spinal cord motor column
[Term]
id: UBERON:0004060
name: neural tube ventricular layer
def: "the layer of undifferentiated, proliferating cells that line the neural tube lumen" [MP:0009689]
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0004061
name: neural tube mantle layer
def: "the layer of glia and differentiating neurons that will form the gray matter of the spinal cord; this lies between the ventricular and marginal layers and includes the basal and alar plates" [MP:0009690]
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0004062
name: neural tube marginal layer
def: "the outermost layer of the neural tube that contains nerve fibers and will form the white matter" [MP:0009691]
is_a: UBERON:0000119 ! cell layer
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0004063
name: spinal cord alar plate
def: "the region of the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses; the alar plate develops into the dorsal horn in the grey matter of the spinal cord" [MP:0009692]
comment: TODO - merge with UBERON:0003054 roof plate?
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0004064
name: basal plate
def: "the region of the mantle layer of the neural tube that lies ventral to the sulcus limitans and contains primarily motor neurons and interneurons. the region of the neural tube ventral to the sulcus limitans. It extends from the rostral mesencephalon to the end of the spinal cord and contains primarily motor neurons, whereas neurons found in the alar plate are primarily associated with sensory functions. The cell types of the basal plate include lower motor neurons and four types of interneuron. Initially the left and right sides of the basal plate are continuous, but during neurulation they become separated by the floor plate, a derivative of the notochord[WP]." [MP:0009693, Wikipedia:Basal_plate_(neural_tube)]
synonym: "basal plate of neural tube" EXACT [Wikipedia:Basal_plate_(neural_tube)]
synonym: "spinal cord basal plate" EXACT [MP:0009693]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0004065
name: primordial meninx
def: "the outermost mesenchymal covering of the developing brain and spinal cord that is composed of tough fibrous connective tissue from which the arachnoid mater, pia mater and dura mater are formed" [MP:0009726]
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0004066
name: frontonasal prominence
def: "During embryonic development, two areas of thickened ectoderm, the olfactory areas, appear immediately under the fore-brain in the anterior wall of the stomodeum, one on either side of a region termed the frontonasal prominence (or process)[WP]. By the upgrowth of the surrounding parts these areas are converted into pits, the olfactory pits, which indent the frontonasal prominence and divide it into a medial and two lateral nasal processes[WP]. two areas of thickened ectoderm, the olfactory areas, appear immediately under the fore-brain in the anterior wall of the stomodeum, one on either side of a region termed the frontonasal prominence. an unpaired facial process in the embryo formed from the tissues surrounding the forebrain vesicle that develops into the forehead and bridge of the nose/snout[MP]." [MP:0009901, Wikipedia:Frontonasal_prominence]
comment: TODO - improve def
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/98/Gray44.png/200px-Gray44.png
xref: ncithesaurus:Frontonasal_Prominence
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0004067
name: lateral nasal prominence
def: "the lateral area of the two branches of a horseshoe-shaped mesenchymal swelling in the future nasal region of the embryo; it separates the olfactory pit from the developing eye and the ala of the nose/snout develops from it" [MP:0009902, Wikipedia:Lateral_nasal_prominence]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray48.png/200px-Gray48.png
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0004068
name: medial nasal prominence
def: "the central area of the two limbs of a horseshoe-shaped mesenchymal swelling that lie medial to the olfactory placode or pit in the future nasal region of the embryo; it joins with the ipsilateral maxillary prominence in the formation of half of the upper jaw, and the nasal tip and philtrum of the upper lip develop from it" [MP:0009903, Wikipedia:Medial_nasal_prominence]
xref: EMAPA:16808
xref: HOG:0000804
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Gray45.png/200px-Gray45.png
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0004069
name: accessory olfactory bulb
def: "the forebrain region that coordinates sensory signaling arising from the vomeronasal organ; it is located on the dorsal-posterior portion of the main olfactory bulb, and the axons that leave the accessory olfactory bulb project to targets in the amygdala and hypothalamus" [MP:0009945]
xref: MA:0000966
xref: NIF_GrossAnatomy:nlx_anat_20090453
is_a: UBERON:0002264 ! olfactory bulb
[Term]
id: UBERON:0004070
name: cerebellum vermis lobule
def: "the region of a cerebellar lobule that resides in the central section of the cerebellum between the two hemispheres; in humans, vermis lobule regions may be nearly continuous with the cerebellar hemisphere lobules dorsally but are separated by deeper longitudinal fissues in the ventral regions; in mammals, the vermis portion of the cerebellum has a foliation pattern along the AP axis that is distinct from the lateral cerebellar hemispheres" [MP:0009957]
comment: TODO - define as a region overlapping
xref: MA:0002968
is_a: UBERON:0004004 ! implied link automatically realized ! cerebellum lobule
relationship: part_of UBERON:0004720
intersection_of: UBERON:0004004 ! cerebellum lobule
intersection_of: part_of UBERON:0004720 ! cerebellar vermis
[Term]
id: UBERON:0004071
name: cerebellum emboliform nucleus
def: "the small wedge shaped nucleus interposed between the dentate and fastigial nuclei; it receives axons from Purkinje cells of the intermediate area of the cerebral hemispheres and most of its efferent connections travel via the superior cerebellar peduncle" [MP:0009981]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004072
name: cerebellum globose nucleus
def: "the two or three small masses of gray matter that is located medial to the emboliform nucleus and lateral to the fastigial nucleus; it receives axons from the intermediate area of the cerebellar hemispheres and its afferents exit through the superior cerebellar peduncle; it is recognized in human cerebellum but is not distinguishable in all mammalian species" [MP:0009982]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004073
name: cerebellum interpositus nucleus
def: "the nucelus composed of the globose and emoliform nuclei of the cerebellum; in some mammalian species the globose nucleus is not distinguishable" [MP:0009984]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004074
name: cerebellum vermis lobule I
def: "." [MP:0009988]
comment: TODO FMA:61904 lingual gyrus FMA:71032 lingula gyrus (lg)
synonym: "lingula" RELATED [MA:0000998]
synonym: "lingula of anterior cerebellum vermis" EXACT []
synonym: "lingula of cerebellum" EXACT []
synonym: "lobule I of cerebellum vermis" EXACT []
synonym: "neuraxis lingula" EXACT []
xref: FMA:83884
xref: MA:0000998
xref: NIF_GrossAnatomy:birnlex_932
is_a: UBERON:0004070 ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004075
name: cerebellum vermis lobule II
def: "The central lobule is a small square lobule, situated in the anterior cerebellar notch. It overlaps the lingula, from which it is separated by the precentral fissure; laterally, it extends along the upper and anterior part of each hemisphere, where it forms a wing-like prolongation, the ala lobuli centralis[WP]." [MP:0009989, Wikipedia:Central_lobule]
comment: central vs alar central? II and III?
synonym: "central lobule" BROAD [MA:0001000]
synonym: "central lobule of cerebellum" BROAD []
synonym: "lobule II of cerebellum vermis" EXACT []
synonym: "vermic lobule II" EXACT [NIF_GrossAnatomy:nlx_anat_20081225]
xref: FMA:72519
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e4/Gray703.png/200px-Gray703.png
xref: MA:0000999
xref: NIF_GrossAnatomy:birnlex_920
xref: NIF_GrossAnatomy:nlx_anat_20081225
is_a: UBERON:0004070 ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004076
name: cerebellum vermis lobule III
def: "." [MP:0009990]
comment: II or III?
synonym: "central lobule" BROAD [MA:0001000]
synonym: "central lobule of cerebellum" BROAD []
synonym: "lobule III of cerebellum vermis" EXACT []
xref: MA:0001000
is_a: UBERON:0004070 ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004077
name: cerebellum vermis lobule IV
def: "The culmen is the portion of the anterior vermis adjacent to the primary fissure of cerebellum. The culmen and the anterior parts of the quadrangular lobules form the lobus culminis[WP]." [MP:0009991, Wikipedia:Culmen_(cerebellum)]
comment: IV or V?
synonym: "culmen" BROAD []
synonym: "culmen of cerebellum" BROAD []
synonym: "lobule IV of cerebellum vermis" EXACT []
synonym: "neuraxis culmen" BROAD [FMA:83886]
xref: FMA:83886
xref: MA:0001001
xref: NIF_GrossAnatomy:birnlex_926
is_a: UBERON:0004070 ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004078
name: cerebellum vermis lobule IX
def: "." [MP:0009992]
synonym: "cerebellar posterior vermis lobule IX" EXACT [PMID:2022820]
synonym: "lobule IX of cerebellar posterior vermis" EXACT [PMID:2022820]
synonym: "lobule IX of cerebellum vermis" EXACT []
synonym: "neuraxis uvula" EXACT [FMA:83883]
synonym: "uvula" BROAD [MA:0001006]
synonym: "uvula of cerebellum" EXACT [FMA:83883]
synonym: "uvula of vermis of cerebellum" EXACT []
synonym: "vermic lobule IX" EXACT [NIF_GrossAnatomy:nlx_anat_20081234]
xref: FMA:83883
xref: MA:0001006
xref: NIF_GrossAnatomy:nlx_anat_20081234
is_a: UBERON:0004070 ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004079
name: cerebellum vermis lobule V
def: "." [MP:0009993]
comment: IV or V?
synonym: "culmen" BROAD []
synonym: "culmen of cerebellum" BROAD []
synonym: "lobule V of cerebellum vermis" EXACT []
synonym: "neuraxis culmen" BROAD [FMA:83886]
synonym: "vermic lobule IV" EXACT [NIF_GrossAnatomy:nlx_anat_20081227]
xref: MA:0001002
xref: NIF_GrossAnatomy:nlx_anat_20081227
is_a: UBERON:0004070 ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004080
name: cerebellum vermis lobule VI
def: "." [MP:0009994]
synonym: "declive" BROAD [MA:0001003]
synonym: "declive of cerebellum" EXACT []
synonym: "declive of vermis of cerebellum" EXACT []
synonym: "lobule VI of cerebellum vermis" EXACT []
synonym: "neuraxis declive" EXACT [FMA:83887]
xref: FMA:83887
xref: MA:0001003
is_a: UBERON:0004070 ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004081
name: cerebellum vermis lobule VII
def: "The folium vermis is a short, narrow, concealed band at the posterior extremity of the vermis, consisting apparently of a single folium, but in reality marked on its upper and under surfaces by secondary fissures. Laterally, it expands in either hemisphere into a considerable lobule, the superior semilunar lobule (lobulus semilunaris superior; postero-superior lobules), which occupies the posterior third of the upper surface of the hemisphere, and is bounded below by the horizontal sulcus. The superior semilunar lobules and the folium vermis form the lobus semilunaris." [MP:0009995, Wikipedia:Folium_(vermis)]
comment: check MA, MP, FMA, folium?
synonym: "folium" BROAD [MA:0001004]
synonym: "folium lobule" NARROW [MP:0009995]
synonym: "folium of cerebellum" EXACT []
synonym: "folium of vermis of cerebellum" EXACT []
synonym: "lobule VII of cerebellum vermis" EXACT []
synonym: "neuraxis folium" EXACT [FMA:83889]
xref: FMA:83889
xref: MA:0001004
is_a: UBERON:0004070 ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004082
name: cerebellum vermis lobule VIII
def: "." [MP:0009996]
synonym: "lobule VIII of cerebellum vermis" EXACT []
synonym: "neuraxis pyramus" EXACT []
synonym: "pyramus" BROAD [MA:0001005]
synonym: "pyramus of cerebellum" EXACT []
synonym: "pyramus of vermis of cerebellum" EXACT []
xref: MA:0001005
is_a: UBERON:0004070 ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004083
name: cerebellum vermis lobule X
def: "." [MP:0009997]
synonym: "lobule X of cerebellum vermis" EXACT []
synonym: "neuraxis nodulus" EXACT []
synonym: "nodulus" BROAD [MA:0001007]
synonym: "nodulus of cerebellum" EXACT []
synonym: "nodulus of vermis of cerebellum" EXACT []
xref: FMA:83882
xref: MA:0001007
xref: NIF_GrossAnatomy:birnlex_1165
is_a: UBERON:0004070 ! cerebellum vermis lobule
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0004084
name: labium
def: "the folds of skin which form the inner lips (labia minora) on both sides of the vaginal opening " [MP:0003520]
synonym: "labia" EXACT []
xref: galen:Labia
xref: MA:0002464
xref: ncithesaurus:Labium
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0004085
name: labia majora
def: "The labia majora are two prominent longitudinal cutaneous folds which extend downward and backward from the mons pubis to the perineum and form the lateral boundaries of the cleft of venus, which contains the labia minora, interlabial sulci, clitoral hood, clitoral glans, frenulum clitoridis, the Hart's Line, and the vulval vestibule, which contains the external openings of the urethra and the vagina. Each labium majus has two surfaces, an outer, pigmented and covered with strong, crisp hairs; and an inner, smooth and beset with large sebaceous follicles. Between the two there is a considerable quantity of areolar tissue, fat, and a tissue resembling the dartos tunic of the scrotum, besides vessels, nerves, and glands. The Labia Majora are thicker in front, where they form by their meeting the anterior commisure of the labia majora. Posteriorly they are not really joined, but appear to become lost in the neighboring integument, ending close to — and nearly parallel with — each other. Together with the connecting skin between them, they form the posterior commisure of the labia majora or posterior boundary of the pudendum. The interval between the posterior commissure of the labia majora and the anus, from 2.5 to 3 cm. in length, constitutes the perineum. The labia majora correspond to the scrotum in the male. Between the labia majora and the inner thighs are the labiocrural folds. Between the labia majora and labia minora are the interlabial sulci. [WP,unvetted]." [Wikipedia:Labia_majora]
synonym: "labium majora" EXACT []
synonym: "labium majorum" EXACT []
synonym: "labium majus" EXACT []
xref: FMA:20367
xref: galen:LabiaMajora
xref: MA:0002844
is_a: UBERON:0004084 ! labium
[Term]
id: UBERON:0004086
name: brain ventricle
def: "one of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord, that like it are derived from the medullary canal of the embryo, that are lined with an epithelial ependyma, and that contain a serous fluid" []
comment: check FMA. TODO: add cavities.
synonym: "cerebral ventricle" EXACT [HP:0002118]
xref: BTO:0001442
xref: FMA:78447
xref: MA:0000818
xref: ncithesaurus:Ventricle_Brain
xref: OpenCyc:Mx4rvmTY65wpEbGdrcN5Y29ycA
is_a: UBERON:0003947 ! implied link automatically realized ! brain ventricle/choroid plexus
is_a: UBERON:0005358 ! ventricle of nervous system
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0004087
name: vena cava
def: "The superior and inferior vena cava are collectively called the venae cavae. They are the veins that return deoxygenated blood from the body into the heart. They both empty into the right atrium. The inferior vena cava (or posterior vena cava in animals) travels up alongside the abdominal aorta with blood from the lower part of the body (see # 11 in the diagram). It is the largest vein in the body. The superior vena cava (or anterior vena cava in animals) is above the heart, and forms from a convergence of the left and right brachiocephalic veins that contain blood from the head and the arms (see # 3 in the diagram). [WP,unvetted]." [Wikipedia:Venae_cavae]
xref: BTO:0001438
xref: EMAPA:18415
xref: GAID:547
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/Heart_numlabels.png/200px-Heart_numlabels.png
xref: MA:0000068
xref: ncithesaurus:Vena_Cava
xref: OpenCyc:Mx4rkJQ4U6gEEdudWQACs5b6Bw
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003479 ! implied link automatically realized ! thoracic cavity vein
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0004088
name: ocular region
def: "." [HP:0000284]
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0004089
name: midface
def: "the middle of the face including the nose and its associated bony structures[MW]." [HP:0000309, http://www.merriam-webster.com/medical/midface]
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0004090
name: periorbital region
def: "." [HP:0000606]
xref: FMA:59351
xref: MA:0002875
is_a: UBERON:0000479 ! portion of tissue
relationship: has_part UBERON:0002515 ! periosteum
relationship: part_of UBERON:0001456 ! face
relationship: surrounds UBERON:0004867 ! orbital cavity
[Term]
id: UBERON:0004092
name: hypothalamus-pituitary axis
def: "." [HP:0000864]
is_a: UBERON:0000015 ! anatomical boundary
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0004093
name: fingertip
def: "." [HP:0001211]
xref: OpenCyc:Mx4rvVjpf5wpEbGdrcN5Y29ycA
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0004095
name: corticospinal tract
def: "The corticospinal or pyramidal tract is a collection of axons that travel between the cerebral cortex of the brain and the spinal cord. The corticospinal tract mostly contains motor axons. It actually consists of two separate tracts in the spinal cord: the lateral corticospinal tract and the medial corticospinal tract. An understanding of these tracts leads to an understanding of why for the most part, one side of the body is controlled by the opposite side of the brain. Also the corticobulbar tract is considered to be a pyramidal tract. The corticobulbar tract carries signals that control motor neurons located in cranial nerve brain nuclei rather than motor neurons located in the spinal cord. The neurons of the pyramidal tracts are pyramidal neurons, but that is not how the pyramidal tract got its name, as most of the pyramidal neurons send their axons elsewhere. Instead, it got its name from the shape of the corticospinal axon tracts: when the pyramidal tract passes the medulla, it forms a dense bundle of nerve fibres that is shaped somewhat like a pyramid. [WP,unvetted]." [HP:0002492, Wikipedia:Corticospinal_tract]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ac/Gray684.png/200px-Gray684.png
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002707 ! pyramidal tract
[Term]
id: UBERON:0004096
name: odontoid process
alt_id: UBERON:0005210
def: "The toothlike process on the upper surface of the axis, which articulates with the atlas above[GAID]." [GAID:238, HP:0003310, Wikipedia:Wikipedia\:Dens_(anatomy)]
comment: TODO check AAO:0000721 odontoid_process -- Anterior process located between the atlantal cotyles that projects into the foramen magnum of the skull and bears facets that articulate with the lateral walls of the foramen
synonym: "axis dens" EXACT [FMA:24043]
synonym: "axis odontoid process" EXACT [MA:0002872]
synonym: "cervical vertebra 2 odontoid process" EXACT [MA:0002872]
synonym: "dens" EXACT [EMAPA:26535]
synonym: "dens of axis" EXACT [FMA:24043]
synonym: "odontoid" RELATED [Wikipedia:Wikipedia\:Dens_(anatomy)]
synonym: "odontoid process of axis" EXACT [FMA:24043]
xref: AAO:0000721
xref: EMAPA:26535
xref: FMA:24043
xref: GAID:238
xref: MA:0002872
xref: OpenCyc:Mx4rwIYGoJwpEbGdrcN5Y29ycA
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0001093 ! second cervical vertebra
[Term]
id: UBERON:0004097
name: renin-aldosterone axis
def: "." [HP:0003350]
is_obsolete: true
[Term]
id: UBERON:0004098
name: tibial plateaux
def: "." [HP:0003832]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0000979 ! tibia
[Term]
id: UBERON:0004099
name: joint spaces of the elbow
def: "Joint cavity shared by all the joints of the elbow. The elbow joint is a compound joint that actually comprises three separate joints: the joints connecting the upper and lower arm: 1) Articulatio humero-ulnaris and 2) Articulatio humero-radialis as well as the proximal joint connecting the forarm bones: 3) Articulatio radio-ulnaris proximalis. All three share a joint cavity which is highly sinuated/scalloped/coved. Joint spaces of the elbow summarizes the joint cavity shared by all three adjoining joints of the elbow joint." [HP:0003943]
is_a: UBERON:0000464 ! implied link automatically realized ! anatomical space
relationship: part_of UBERON:0001490
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: part_of UBERON:0001490 ! elbow joint
[Term]
id: UBERON:0004100
name: renal collecting system
def: "The collecting duct system of the kidney consists of a series of tubules and ducts that connect the nephrons to the ureter. It participates in electrolyte and fluid balance through reabsorption and excretion, processes regulated by the hormones aldosterone and antidiuretic hormone." [HP:0004742, Wikipedia:Collecting_duct_system]
synonym: "collecting_duct_system" EXACT [Wikipedia:Collecting_duct_system]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0004101
name: nasolabial region
def: "." [HP:0005289]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
relationship: part_of UBERON:0000004 ! olfactory apparatus
[Term]
id: UBERON:0004102
name: tracheobronchial system
def: "." [HP:0005607]
is_a: UBERON:0000467 ! anatomical system
relationship: has_part UBERON:0002185 ! bronchus
relationship: has_part UBERON:0003126 ! trachea
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004103
name: alveolar ridge
def: "one of the two jaw ridges either on the roof of the mouth between the upper teeth and the hard palate or on the bottom of the mouth behind the lower teeth." [Wikipedia:Alveolar_ridge]
synonym: "alveolar body" EXACT [MP:0004189]
synonym: "alveolar bone" EXACT [MP:0004189]
synonym: "alveolar margin" EXACT []
xref: BTO:0001383
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001708 ! jaw
[Term]
id: UBERON:0004104
name: hairline
def: "." [HP:0009553]
is_a: UBERON:0000061 ! anatomical structure
relationship: adjacent_to UBERON:0001037 ! strand of hair
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0004105
name: subungual region
def: "." [HP:0009723]
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001705 ! nail
[Term]
id: UBERON:0004106
name: crus of ear
def: "horizontal piece of cartilage located outside the ear canal that divides the upper and lower parts of the ear." [HP:0009895]
synonym: "crus of helical part of auricular cartilage" EXACT []
xref: FMA:61024
is_a: UBERON:0001867 ! implied link automatically realized ! cartilage of external ear
is_a: UBERON:0002418 ! cartilage
relationship: part_of UBERON:0001691 ! external ear
[Term]
id: UBERON:0004108
name: clivus
def: "smooth sloping surface on the upper posterior part of the body of the sphenoid bone supporting the pons." [HP:0010558]
xref: ncithesaurus:Clivus
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001677 ! sphenoid bone
[Term]
id: UBERON:0004109
name: cortex of humerus
def: "." [HP:0010629]
synonym: "compact bone of humerus" EXACT [FMA:31542]
synonym: "cortex of the humerus" EXACT []
synonym: "humerus compact bone" EXACT []
synonym: "humerus cortical bone" EXACT []
xref: FMA:31542
is_a: UBERON:0001439 ! implied link automatically realized ! compact bone
is_a: UBERON:0003588 ! implied link automatically realized ! forelimb connective tissue
is_a: UBERON:0005808 ! implied link automatically realized ! bone tissue of long bone
relationship: part_of UBERON:0000976
intersection_of: UBERON:0001439 ! compact bone
intersection_of: part_of UBERON:0000976 ! humerus
[Term]
id: UBERON:0004110
name: midnasal cavity
def: "includes the cavity between the nares and the choanae." [HP:0010641]
is_a: UBERON:0002553 ! anatomical cavity
relationship: adjacent_to UBERON:0004771 ! posterior nasal aperture
relationship: adjacent_to UBERON:0005928 ! external naris
relationship: part_of UBERON:0001707 ! nasal cavity
[Term]
id: UBERON:0004111
name: anatomical conduit
xref: FMA:242873
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0004112
name: muscle of middle ear
def: "A muscle of head that is part of a tympanic cavity [Obol]." [OBOL:automatic]
comment: check tympanic cavity vs middle ear. the same for muscles?
synonym: "adult head muscle organ of anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "adult head muscle organ of cavity of middle ear" EXACT [OBOL:automatic]
synonym: "adult head muscle organ of middle ear anatomical cavity" EXACT [OBOL:automatic]
synonym: "adult head muscle organ of middle ear cavity" EXACT [OBOL:automatic]
synonym: "adult head muscle organ of tympanic cavity" EXACT [OBOL:automatic]
synonym: "anatomical cavity of middle ear adult head muscle organ" EXACT [OBOL:automatic]
synonym: "anatomical cavity of middle ear cephalic musculature" EXACT [OBOL:automatic]
synonym: "anatomical cavity of middle ear head muscle" EXACT [OBOL:automatic]
synonym: "anatomical cavity of middle ear head muscle organ" EXACT [OBOL:automatic]
synonym: "anatomical cavity of middle ear muscle of head" EXACT [OBOL:automatic]
synonym: "anatomical cavity of middle ear muscle organ of adult head" EXACT [OBOL:automatic]
synonym: "anatomical cavity of middle ear muscle organ of head" EXACT [OBOL:automatic]
synonym: "anatomical cavity of middle ear musculus caput" EXACT [OBOL:automatic]
synonym: "cavity of middle ear adult head muscle organ" EXACT [OBOL:automatic]
synonym: "cavity of middle ear cephalic musculature" EXACT [OBOL:automatic]
synonym: "cavity of middle ear head muscle" EXACT [OBOL:automatic]
synonym: "cavity of middle ear head muscle organ" EXACT [OBOL:automatic]
synonym: "cavity of middle ear muscle of head" EXACT [OBOL:automatic]
synonym: "cavity of middle ear muscle organ of adult head" EXACT [OBOL:automatic]
synonym: "cavity of middle ear muscle organ of head" EXACT [OBOL:automatic]
synonym: "cavity of middle ear musculus caput" EXACT [OBOL:automatic]
synonym: "cephalic musculature of anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "cephalic musculature of cavity of middle ear" EXACT [OBOL:automatic]
synonym: "cephalic musculature of middle ear anatomical cavity" EXACT [OBOL:automatic]
synonym: "cephalic musculature of middle ear cavity" EXACT [OBOL:automatic]
synonym: "cephalic musculature of tympanic cavity" EXACT [OBOL:automatic]
synonym: "head muscle of anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "head muscle of cavity of middle ear" EXACT [OBOL:automatic]
synonym: "head muscle of middle ear anatomical cavity" EXACT [OBOL:automatic]
synonym: "head muscle of middle ear cavity" EXACT [OBOL:automatic]
synonym: "head muscle of tympanic cavity" EXACT [OBOL:automatic]
synonym: "head muscle organ of anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "head muscle organ of cavity of middle ear" EXACT [OBOL:automatic]
synonym: "head muscle organ of middle ear anatomical cavity" EXACT [OBOL:automatic]
synonym: "head muscle organ of middle ear cavity" EXACT [OBOL:automatic]
synonym: "head muscle organ of tympanic cavity" EXACT [OBOL:automatic]
synonym: "middle ear anatomical cavity adult head muscle organ" EXACT [OBOL:automatic]
synonym: "middle ear anatomical cavity cephalic musculature" EXACT [OBOL:automatic]
synonym: "middle ear anatomical cavity head muscle" EXACT [OBOL:automatic]
synonym: "middle ear anatomical cavity head muscle organ" EXACT [OBOL:automatic]
synonym: "middle ear anatomical cavity muscle of head" EXACT [OBOL:automatic]
synonym: "middle ear anatomical cavity muscle organ of adult head" EXACT [OBOL:automatic]
synonym: "middle ear anatomical cavity muscle organ of head" EXACT [OBOL:automatic]
synonym: "middle ear anatomical cavity musculus caput" EXACT [OBOL:automatic]
synonym: "middle ear cavity adult head muscle organ" EXACT [OBOL:automatic]
synonym: "middle ear cavity cephalic musculature" EXACT [OBOL:automatic]
synonym: "middle ear cavity head muscle" EXACT [OBOL:automatic]
synonym: "middle ear cavity head muscle organ" EXACT [OBOL:automatic]
synonym: "middle ear cavity muscle of head" EXACT [OBOL:automatic]
synonym: "middle ear cavity muscle organ of adult head" EXACT [OBOL:automatic]
synonym: "middle ear cavity muscle organ of head" EXACT [OBOL:automatic]
synonym: "middle ear cavity musculus caput" EXACT [OBOL:automatic]
synonym: "muscle of head of anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "muscle of head of cavity of middle ear" EXACT [OBOL:automatic]
synonym: "muscle of head of middle ear anatomical cavity" EXACT [OBOL:automatic]
synonym: "muscle of head of middle ear cavity" EXACT [OBOL:automatic]
synonym: "muscle of head of tympanic cavity" EXACT [OBOL:automatic]
synonym: "muscle of tympanic cavity" EXACT []
synonym: "muscle organ of adult head of anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "muscle organ of adult head of cavity of middle ear" EXACT [OBOL:automatic]
synonym: "muscle organ of adult head of middle ear anatomical cavity" EXACT [OBOL:automatic]
synonym: "muscle organ of adult head of middle ear cavity" EXACT [OBOL:automatic]
synonym: "muscle organ of adult head of tympanic cavity" EXACT [OBOL:automatic]
synonym: "muscle organ of head of anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "muscle organ of head of cavity of middle ear" EXACT [OBOL:automatic]
synonym: "muscle organ of head of middle ear anatomical cavity" EXACT [OBOL:automatic]
synonym: "muscle organ of head of middle ear cavity" EXACT [OBOL:automatic]
synonym: "muscle organ of head of tympanic cavity" EXACT [OBOL:automatic]
synonym: "musculus caput of anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "musculus caput of cavity of middle ear" EXACT [OBOL:automatic]
synonym: "musculus caput of middle ear anatomical cavity" EXACT [OBOL:automatic]
synonym: "musculus caput of middle ear cavity" EXACT [OBOL:automatic]
synonym: "musculus caput of tympanic cavity" EXACT [OBOL:automatic]
synonym: "tympanic cavity adult head muscle organ" EXACT [OBOL:automatic]
synonym: "tympanic cavity cephalic musculature" EXACT [OBOL:automatic]
synonym: "tympanic cavity head muscle" EXACT [OBOL:automatic]
synonym: "tympanic cavity head muscle organ" EXACT [OBOL:automatic]
synonym: "tympanic cavity muscle" EXACT []
synonym: "tympanic cavity muscle of head" EXACT [OBOL:automatic]
synonym: "tympanic cavity muscle organ of adult head" EXACT [OBOL:automatic]
synonym: "tympanic cavity muscle organ of head" EXACT [OBOL:automatic]
synonym: "tympanic cavity musculus caput" EXACT [OBOL:automatic]
xref: MA:0000256
is_a: UBERON:0002376 ! muscle of head
relationship: part_of UBERON:0004114
intersection_of: UBERON:0002376 ! muscle of head
intersection_of: part_of UBERON:0004114 ! tympanic cavity
relationship: part_of UBERON:0004114 ! tympanic cavity
[Term]
id: UBERON:0004113
name: muscle of auditory ossicle
xref: FMA:49026
is_a: UBERON:0002376 ! muscle of head
relationship: attached_to UBERON:0001686
intersection_of: UBERON:0002376 ! muscle of head
intersection_of: attached_to UBERON:0001686 ! auditory ossicle
relationship: attached_to UBERON:0001686 ! auditory ossicle
[Term]
id: UBERON:0004114
name: tympanic cavity
def: "small cavity surrounding the bones of the middle ear. " [Wikipedia:Tympanic_cavity]
synonym: "anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "cavity of middle ear" EXACT [OBOL:automatic]
synonym: "middle ear anatomical cavity" EXACT [OBOL:automatic]
synonym: "middle ear cavity" EXACT [OBOL:automatic]
xref: FMA:56461
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/19/Gray923.png/200px-Gray923.png
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001756
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: part_of UBERON:0001756 ! middle ear
relationship: develops_from UBERON:0004117 ! pharyngeal pouch
[Term]
id: UBERON:0004115
name: blood vessel of tympanic cavity
def: "A blood vessel that is part of a tympanic cavity [Obol]." [OBOL:automatic]
synonym: "anatomical cavity of middle ear blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "blood vessel of cavity of middle ear" EXACT [OBOL:automatic]
synonym: "blood vessel of middle ear anatomical cavity" EXACT [OBOL:automatic]
synonym: "blood vessel of middle ear cavity" EXACT [OBOL:automatic]
synonym: "cavity of middle ear blood vessel" EXACT [OBOL:automatic]
synonym: "middle ear anatomical cavity blood vessel" EXACT [OBOL:automatic]
synonym: "middle ear blood vessel" EXACT []
synonym: "middle ear cavity blood vessel" EXACT [OBOL:automatic]
synonym: "tympanic cavity blood vessel" EXACT []
xref: MA:0001219
is_a: UBERON:0001981 ! blood vessel
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
relationship: part_of UBERON:0004114
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0004114 ! tympanic cavity
relationship: part_of UBERON:0004114 ! tympanic cavity
[Term]
id: UBERON:0004116
name: nerve of tympanic cavity
def: "A nerve that is part of a tympanic cavity [Obol]." [OBOL:automatic]
synonym: "anatomical cavity of middle ear nerve" EXACT [OBOL:automatic]
synonym: "cavity of middle ear nerve" EXACT [OBOL:automatic]
synonym: "middle ear anatomical cavity nerve" EXACT [OBOL:automatic]
synonym: "middle ear cavity nerve" EXACT [OBOL:automatic]
synonym: "nerve blood vessel" EXACT []
synonym: "nerve of anatomical cavity of middle ear" EXACT [OBOL:automatic]
synonym: "nerve of cavity of middle ear" EXACT [OBOL:automatic]
synonym: "nerve of middle ear anatomical cavity" EXACT [OBOL:automatic]
synonym: "nerve of middle ear cavity" EXACT [OBOL:automatic]
synonym: "tympanic cavity nerve" EXACT []
xref: MA:0001222
is_a: UBERON:0001021 ! nerve
relationship: part_of UBERON:0004114
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0004114 ! tympanic cavity
relationship: part_of UBERON:0004114 ! tympanic cavity
[Term]
id: UBERON:0004117
name: pharyngeal pouch
def: "embryonic structure that forms on the endodermal side between the branchial arches, and pharyngeal grooves (or clefts) form the lateral ectodermal surface of the neck region to separate the arches. he pouches line up with the clefts,[1] and these thin segments become gills in fish. Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits[ZFA]." [Wikipedia:Pharyngeal_pouch_(embryology)]
synonym: "branchial pouch" EXACT [Wikipedia:Branchial_pouch]
synonym: "visceral pouch" EXACT SENSU []
xref: EHDAA:1086
xref: EHDAA:1669
xref: EHDAA:579
xref: EHDAA:617
xref: HOG:0001203
xref: ncithesaurus:Pharyngeal_Pouch
xref: XAO:0000282
xref: ZFA:0001106
is_a: UBERON:0002050 ! embryonic structure
relationship: adjacent_to UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0004118
name: vasculature of iris
def: "A vasculature that is part of a iris [Obol]." [OBOL:automatic]
synonym: "iris vascular network" EXACT [OBOL:automatic]
synonym: "iris vasculature" EXACT []
synonym: "vascular network of iris" EXACT [OBOL:automatic]
is_a: UBERON:0002049 ! vasculature
is_a: UBERON:0002203 ! implied link automatically realized ! vasculature of eye
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001769
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0004119
name: endoderm-derived structure
def: "An anatomical structure that develops (entirely or partially) from the endoderm." [UBERON:cjm]
comment: Grouping term for query purposes
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_from UBERON:0000925
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000925 ! endoderm
[Term]
id: UBERON:0004120
name: mesoderm-derived structure
def: "An anatomical structure that develops (entirely or partially) from the mesoderm." [UBERON:cjm]
comment: Grouping term for query purposes
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_from UBERON:0000926
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0004121
name: ectoderm-derived structure
def: "An anatomical structure that develops (entirely or partially) from the ectoderm." [UBERON:cjm]
comment: Grouping term for query purposes
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_from UBERON:0000924
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0004122
name: genitourinary system
synonym: "genitourinary tract" RELATED []
synonym: "GU tract" RELATED []
synonym: "urogenital system" EXACT []
xref: AAO:0000624
xref: BILA:0000122
xref: BTO:0003091
xref: EMAPA:16367
xref: GAID:362
xref: HOG:0000286
xref: ncithesaurus:Genitourinary_System
xref: OpenCyc:Mx4rQRpVMgAKEdyHxgDggVfs8g
xref: XAO:0000140
is_a: UBERON:0000467 ! anatomical system
relationship: has_part UBERON:0000990
relationship: has_part UBERON:0001008
intersection_of: UBERON:0000467 ! anatomical system
intersection_of: has_part UBERON:0000990 ! reproductive system
intersection_of: has_part UBERON:0001008 ! urinary system
[Term]
id: UBERON:0004123
name: myocardial layer
synonym: "layer of myocardium" EXACT []
synonym: "myocardium layer" EXACT []
xref: MA:0000080
is_a: UBERON:0000119 ! cell layer
relationship: part_of UBERON:0002349 ! myocardium
[Term]
id: UBERON:0004124
name: myocardium trabecular layer
def: "The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the endocardium. In zebrafish, unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae have more strut-like character, and are more uniform without apparent regional differences[ZFA]." [ZFA:0005059]
synonym: "myocardial trabecular layer" EXACT []
synonym: "trabecular layer" EXACT [ZFA:0005059]
xref: MA:0002866
xref: ZFA:0005059
is_a: UBERON:0002385 ! implied link automatically realized ! muscle tissue
is_a: UBERON:0004123 ! myocardial layer
[Term]
id: UBERON:0004125
name: myocardial compact layer
def: " outer dense layer of the myocardium uniting the epicardium and myocardium[MP]." [MP:0004056]
xref: MA:0002865
is_a: UBERON:0004123 ! myocardial layer
[Term]
id: UBERON:0004126
name: trabecular layer of ventricle
synonym: "trabecular cardiac ventricle muscle" EXACT [GO:0003222]
synonym: "ventricular trabecular myocardium" EXACT [GO:0003222]
xref: FMA:83511
xref: ZFA:0005060
is_a: UBERON:0004124 ! implied link automatically realized ! myocardium trabecular layer
relationship: part_of UBERON:0002082
intersection_of: UBERON:0004124 ! myocardium trabecular layer
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0004127
name: compact layer of ventricle
def: "The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle." [ZFA:0005062]
synonym: "compact cardiac ventricle muscle" EXACT []
synonym: "ventricle myocardium compact zone" EXACT [MP:0010556]
synonym: "ventricular compact myocardium" EXACT []
synonym: "ventricular myocardial compact layer" EXACT [MP:0010556]
synonym: "ventricular myocardial compact zone" EXACT [MP:0010556]
xref: ZFA:0005062
is_a: UBERON:0004125 ! implied link automatically realized ! myocardial compact layer
relationship: part_of UBERON:0002082
intersection_of: UBERON:0004125 ! myocardial compact layer
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0004128
name: optic vesicle
def: "The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup[GO]. Portion of tissue that is comprised of neuroepitheium which has pinched off from the anterior neural keel and will form the optic cup[ZFA]." [GO:0003404, Wikipedia:Optic_vesicles]
comment: Genes: Six3, Pax6, Rx1 are expressed together in the tip of the neural plate [ISBN:9780878932504 "Developmental Biology"]
synonym: "evagination" RELATED []
synonym: "optic vesicle" RELATED []
xref: EHDAA2:0001320
xref: EMAPA:16540
xref: HOG:0000165
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e0/Gray863.png/200px-Gray863.png
xref: XAO:0000228
xref: ZFA:0000050
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0003071 ! eye primordium
relationship: induced_by UBERON:0004880 ! chordamesoderm
[Term]
id: UBERON:0004129
name: growth plate cartilage
def: "cartilage that will provide a scaffold for mineralization of endochondral bones as they elongate or grow." [GO:0003417]
synonym: "growth plate" RELATED []
is_a: UBERON:0002418 ! cartilage
relationship: surrounds UBERON:0002513 ! endochondral bone
[Term]
id: UBERON:0004130
name: cerebellar layer
synonym: "cell layer of cerebellar cortex" EXACT []
synonym: "layer of cerebellar cortex" EXACT []
xref: FMA:83141
xref: MA:0000201
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0004132
name: trigeminal sensory nucleus
def: "The sensory trigeminal nerve nuclei are the largest of the cranial nerve nuclei, and extend through the whole of the midbrain, pons and medulla. The nucleus is divided into three parts, from rostral to caudal (top to bottom in humans): * The mesencephalic nucleus * The chief sensory nucleus (or pontine nucleus or main sensory nucleus or primary nucleus) * The spinal trigeminal nucleus[WP]." [Wikipedia:Trigeminal_nuclei]
synonym: "sensory trigeminal nucleus" EXACT [ZFA:0000433]
synonym: "sensory trigeminal V nucleus" EXACT []
synonym: "trigeminal sensory nucleus" EXACT [GO:0021730]
synonym: "trigeminal V sensory nucleus" EXACT [MA:0001030]
xref: FMA:54533
xref: HOG:0001356
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray696.png/200px-Gray696.png
xref: MA:0001030
xref: ZFA:0000433
is_a: UBERON:0000126 ! cranial nerve nucleus
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
relationship: part_of UBERON:0002925 ! trigeminal nuclear complex
[Term]
id: UBERON:0004133
name: salivatory nucleus
def: "." [GO:0021751]
synonym: "salivary nucleus" EXACT [GO:0021751]
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0004134
name: proximal tubule
def: "The proximal tubule is a nephron tubule that connects Bowman's capsule to the loop of Henle. It has a brush border epithelial morphology." [GO:0072014]
synonym: "renal proximal tubule" EXACT []
xref: BTO:0001498
xref: MA:0002611
is_a: UBERON:0001231 ! renal tubule
relationship: continuous_with UBERON:0001230 ! glomerular capsule
relationship: continuous_with UBERON:0001289 ! descending limb of loop of Henle
relationship: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0004135
name: distal tubule
def: "The distal tubule is a nephron tubule that consists of the convoluted and straight distal tubule segments" [GO:0072017]
synonym: "renal distal tubule" EXACT []
xref: BTO:0000482
xref: MA:0002633
is_a: UBERON:0001231 ! renal tubule
[Term]
id: UBERON:0004136
name: intermediate tubule
def: "The intermediate tubule is a nephron tubule that lies between the proximal and distal tubules" [GO:0072018]
synonym: "renal intermediate tubule" EXACT []
xref: FMA:17718
is_a: UBERON:0001231 ! renal tubule
[Term]
id: UBERON:0004138
name: somitomeric trunk muscle
def: "The somitomeric trunk muscle is derived from somitomeric mesoderm. The muscle begins its development with the differentiation of the muscle cells and ends with the mature muscle. An example of this process is found in Mus musculus.[GO]." [GO:0002075]
comment: TODO - find N+S conditions. SMT & develops_from somite is not specific enough (all SMT develops_from somite)
is_a: UBERON:0001134 ! skeletal muscle tissue
relationship: develops_from UBERON:0002329 ! somite
[Term]
id: UBERON:0004139
name: cardiogenic plate
def: "The first recognizable structure derived from the heart field" [GO:0003142]
comment: TODO - check plate vs rudiment
synonym: "heart rudiment" RELATED []
xref: EHDAA2:0000215
xref: EMAPA:16106
xref: HOG:0000975
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0004291 ! heart rudiment
[Term]
id: UBERON:0004140
name: heart field
def: "a specific region of the lateral mesoderm in which the heart will develop." [GO:0003128]
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0003081 ! lateral plate mesoderm
[Term]
id: UBERON:0004141
name: embryonic heart tube
def: "The embryonic heart tube is an epithelial tube that will give rise to the mature heart[GO]. Cavitated compound organ that will become the adult heart following looping morphogenesis and valve formation[ZFA]." [GO:0003143]
synonym: "heart tube" EXACT []
xref: ZFA:0000360
is_a: UBERON:0003914 ! epithelial tube
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0004291 ! heart rudiment
relationship: develops_into UBERON:0000948 ! heart
[Term]
id: UBERON:0004142
name: outflow tract septum
def: "The outflow tract septum is a partition in the outflow tract" [GO:0003148]
is_a: UBERON:0002099 ! implied link automatically realized ! cardiac septum
relationship: part_of UBERON:0004145
intersection_of: UBERON:0002099 ! cardiac septum
intersection_of: part_of UBERON:0004145 ! outflow tract
[Term]
id: UBERON:0004143
name: membranous septum
def: "The membranous septum is the upper part of ventricular septum." [GO:0003149]
is_a: UBERON:0002099 ! implied link automatically realized ! cardiac septum
is_a: UBERON:0003037 ! septum
relationship: part_of UBERON:0002094 ! interventricular septum
[Term]
id: UBERON:0004144
name: muscular septum
def: "The muscular septum is the lower part of the ventricular septum" [GO:0003150]
is_a: UBERON:0002099 ! implied link automatically realized ! cardiac septum
is_a: UBERON:0003037 ! septum
relationship: part_of UBERON:0002094 ! interventricular septum
[Term]
id: UBERON:0004145
name: outflow tract
def: "The outflow tract is the portion of the heart through which blood flows into the arteries" [GO:0003151]
comment: check ZFA, which has separate bulbus arteriosus term
synonym: "cardiac outflow tract" EXACT []
xref: EHDAA:464
xref: EHDAA:798
xref: EHDAA2:0001351
xref: EMAPA:16229
xref: EMAPA:16346
xref: HOG:0000670
xref: MA:0000100
xref: ZFA:0000173
is_a: UBERON:0004111 ! anatomical conduit
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0004146
name: His-Purkinje system
def: "The His-Purkinje system receives signals from the AV node and is composed of the fibers that regulate cardiac muscle contraction in the ventricles" [GO:0003164]
xref: ZFA:0005071
is_a: UBERON:0002350 ! conducting system of heart
[Term]
id: UBERON:0004147
name: cardiac Purkinje fiber
def: "The cardiac Purkinje fiber is part of the cardiac conduction system that receives signals from the bundle of His and innervates the ventricular cardiac muscle" [GO:0003165]
xref: BTO:0001735
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0004146 ! His-Purkinje system
[Term]
id: UBERON:0004148
name: coronary vein
def: "Vein of heart" [GOC:Obol]
synonym: "heart vein" EXACT [OBOL:automatic]
synonym: "vein of heart" EXACT [OBOL:automatic]
xref: FMA:12846
xref: galen:CoronaryVein
xref: ncithesaurus:Coronary_Vein
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003498 ! implied link automatically realized ! heart blood vessel
relationship: part_of UBERON:0000948
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0004149
name: ventriculo bulbo valve
def: "A heart valve located between the ventricle and bulbus arteriosus." [GO:0003173]
xref: ZFA:0001375
is_a: UBERON:0000946 ! cardial valve
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0002062 ! endocardial cushion
[Term]
id: UBERON:0004150
name: coronary sinus valve
def: "Vestigial cardiac valve which is continuous with the valve of the inferior vena cava[FMA]." [GO:0003178]
synonym: "thebesian valve" EXACT []
synonym: "thebesius valve" EXACT []
synonym: "valve of coronary sinus" EXACT []
xref: FMA:9242
is_a: UBERON:0000946 ! cardial valve
[Term]
id: UBERON:0004151
name: cardiac chamber
def: "A cardiac chamber surrounds an enclosed cavity within the heart" [GO:0003205]
comment: generic enough to cover FBbt:00003156 heart chamber but this is a cavity. GO defines it as the cavity. TODO - move subclasses. Note this also includes sinus venosus
synonym: "chamber of heart" EXACT []
synonym: "heart chamber" EXACT []
xref: FMA:7095
xref: OpenCyc:Mx4rmexpjPdAEduAAAAOpmP6tw
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0004152
name: bulbus arteriosus
def: "The bulbus arteriosus is an elastic heart chamber[GO]. Multi-tissue structure that consists of three layers and through which the blood exits the heart. The bulbus arteriosus is a pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches[ZFA]." [GO:0003232, PMID:15108157]
xref: ZFA:0000173
is_a: UBERON:0004151 ! cardiac chamber
[Term]
id: UBERON:0004153
name: ventricular septum intermedium
def: "." [GO:0003282]
is_a: UBERON:0002094 ! interventricular septum
[Term]
id: UBERON:0004154
name: septum primum
def: "." [GO:0003284]
xref: EHDAA:1900
xref: EHDAA2:0001825
xref: EMAPA:17013
xref: FMA:63909
xref: HOG:0000020
xref: ncithesaurus:Septum_Primum
is_a: UBERON:0002085 ! interatrial septum
[Term]
id: UBERON:0004155
name: septum secundum
def: "." [GO:0003285]
xref: EHDAA:3406
xref: EHDAA2:0001827
xref: EMAPA:17864
xref: FMA:63910
xref: HOG:0000021
xref: ncithesaurus:Septum_Secundum
is_a: UBERON:0002085 ! interatrial septum
[Term]
id: UBERON:0004157
name: atrial septum primum
def: "." [GO:0003289]
is_a: UBERON:0002085 ! interatrial septum
[Term]
id: UBERON:0004158
name: atrial septum secundum
def: "." [GO:0003290]
is_a: UBERON:0002085 ! interatrial septum
[Term]
id: UBERON:0004159
name: atrial septum intermedium
def: "." [GO:0003291]
is_a: UBERON:0002085 ! interatrial septum
[Term]
id: UBERON:0004160
name: proepicardium
def: "An outpouching of the septum transversum[GO]. An embryonic group of progenitor cells that forms near the venous pole of the heart and gives rise to the epicardium[Wiktionary]" [GO:0003342, http://en.wiktionary.org/wiki/proepicardium]
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme
relationship: part_of UBERON:0004161 ! septum transversum
[Term]
id: UBERON:0004161
name: septum transversum
def: "The septum transversum is a portion of the trunk mesenchyme" [GO:0003343, Wikipedia:Septum_transversum]
xref: EHDAA:736
xref: EHDAA2:0001829
xref: EMAPA:16318
xref: HOG:0000019
xref: ncithesaurus:Septum_Transversum
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0005256 ! implied link automatically realized ! trunk mesenchyme
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0004162
name: pulmonary myocardium
def: "The pulmonary myocardium is the myocardial tissue present in the pulmonary vein" [GO:0003350]
is_a: UBERON:0002036 ! striated muscle tissue
relationship: part_of UBERON:0002016 ! pulmonary vein
relationship: part_of UBERON:0002349 ! myocardium
[Term]
id: UBERON:0004163
name: anterior ectodermal midgut
def: "portions of the midgut that are derived from ectoderm." [GO:0007441]
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0004164
name: branchiomeric skeletal muscle
def: "The branchiomeric muscle is derived from cranial mesoderm and controls facial expression, pharyngeal and laryngeal function, operating the jaw. Branchiomeric muscles of mammals correspond to the gill musculature of fish[GO]." [GO:0014707]
comment: TODO - develops from cranial mesoderm. TODO - gill musculature
is_a: UBERON:0001134 ! skeletal muscle tissue
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0002342 ! neural crest
[Term]
id: UBERON:0004165
name: ammon gyrus
alt_id: UBERON:0003940
def: "The ammon gyrus, often subdivided into the CA1 and CA3 regions, is one of the two interlocking gyri of the hippocampus that is rich in large pyramidal neurons" [GO:0021541, MP:0000815]
comment: TODO check - GO uses this as a separate term from hippocampus, but not in any other AO. NIF implies this is the same as hippocampus proper
synonym: "Ammon's horn" RELATED []
synonym: "Cornu Ammonis" RELATED []
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001954 ! hippocampus
[Term]
id: UBERON:0004166
name: superior reticular formation
def: "." [GO:0021729]
is_a: UBERON:0002275 ! reticular formation
[Term]
id: UBERON:0004167
name: orbitofrontal cortex
def: "The orbitofrontal cortex is a cerebral cortex region located in the frontal lobe" [GO:0021769]
xref: FMA:242003
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000349 ! limbic system
relationship: part_of UBERON:0001870 ! frontal cortex
[Term]
id: UBERON:0004170
name: spinal cord ventral commissure
def: "." [GO:0021965]
is_a: UBERON:0001020 ! commissure
is_a: UBERON:0005835 ! implied link automatically realized ! cuneate fasciculus of spinal cord
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0004171
name: trigeminothalamic tract
def: "the trigeminothalamic tract is one of the major routes of nociceptive and temperature signaling from the face" [GO:0021974]
xref: FMA:83852
is_a: UBERON:0001018 ! axon tract
[Term]
id: UBERON:0004172
name: pons reticulospinal tract
def: "axon tract that carries efferent (outgoing) action potentials from the cell body in the pons towards target cells in the spinal cord." [GO:0021975]
is_a: UBERON:0001018 ! axon tract
[Term]
id: UBERON:0004173
name: medulla reticulospinal tract
def: "axon tract that carries efferent (outgoing) action potentials from the cell body in the medulla towards target cells in the spinal cord.." [GO:0021976]
is_a: UBERON:0001018 ! axon tract
[Term]
id: UBERON:0004174
name: leg joint
def: "Joint in the leg. For example the knee, which separates the leg tibia and femur" [GO:0035111]
synonym: "joint of leg" EXACT [OBOL:automatic]
is_a: UBERON:0003840 ! implied link automatically realized ! hindlimb joint
relationship: part_of UBERON:0000978
intersection_of: UBERON:0000982 ! skeletal joint
intersection_of: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0004175
name: internal reproductive organ
def: "The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals" [GO:0035260]
synonym: "internal genitalia" EXACT []
synonym: "internal reproductive organ" EXACT []
synonym: "internal sex organ" EXACT []
xref: FMA:45652
is_a: UBERON:0003133 ! reproductive organ
[Term]
id: UBERON:0004176
name: external reproductive organ
def: "The external genitalia are the outer sex organs, such as the penis or vulva in mammals" [GO:0035261]
synonym: "external genitalia" EXACT []
synonym: "external reproductive organ" EXACT []
synonym: "external sex organ" EXACT []
xref: FMA:45643
is_a: UBERON:0003133 ! reproductive organ
[Term]
id: UBERON:0004177
name: hemopoietic organ
def: "Organ that is part of the hematopoietic system." [GOC:Obol]
synonym: "haematological system organ" EXACT [OBOL:automatic]
synonym: "haemopoietic system organ" EXACT [OBOL:automatic]
synonym: "hematopoeitic or lymphoid organ" NARROW []
synonym: "hematopoietic system organ" EXACT [OBOL:automatic]
synonym: "organ of haematological system" EXACT [OBOL:automatic]
synonym: "organ of haemopoietic system" EXACT [OBOL:automatic]
synonym: "organ of hematopoietic system" EXACT [OBOL:automatic]
synonym: "organ of organa haemopoietica" EXACT [OBOL:automatic]
synonym: "organa haemopoietica organ" EXACT [OBOL:automatic]
is_a: UBERON:0000062 ! implied link automatically realized ! organ
relationship: part_of UBERON:0002390
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002390 ! hematopoietic system
[Term]
id: UBERON:0004178
name: aorta smooth muscle tissue
def: "A portion of smooth muscle tissue that is part of an aorta [Obol]." [OBOL:automatic]
synonym: "adult aorta involuntary muscle" EXACT [OBOL:automatic]
synonym: "adult aorta non-striated muscle" EXACT [OBOL:automatic]
synonym: "adult aorta smooth muscle" EXACT [OBOL:automatic]
synonym: "adult aorta smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "aorta involuntary muscle" EXACT [OBOL:automatic]
synonym: "aorta non-striated muscle" EXACT [OBOL:automatic]
synonym: "aorta smooth muscle" EXACT [OBOL:automatic]
synonym: "dorsal aorta involuntary muscle" EXACT [OBOL:automatic]
synonym: "dorsal aorta non-striated muscle" EXACT [OBOL:automatic]
synonym: "dorsal aorta smooth muscle" EXACT [OBOL:automatic]
synonym: "dorsal aorta smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of adult aorta" EXACT [OBOL:automatic]
synonym: "involuntary muscle of aorta" EXACT [OBOL:automatic]
synonym: "involuntary muscle of dorsal aorta" EXACT [OBOL:automatic]
synonym: "involuntary muscle of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "non-striated muscle of adult aorta" EXACT [OBOL:automatic]
synonym: "non-striated muscle of aorta" EXACT [OBOL:automatic]
synonym: "non-striated muscle of dorsal aorta" EXACT [OBOL:automatic]
synonym: "non-striated muscle of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "smooth muscle of adult aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle of aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle of dorsal aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of adult aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of dorsal aorta" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree involuntary muscle" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree non-striated muscle" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree smooth muscle" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree smooth muscle tissue" EXACT [OBOL:automatic]
xref: BTO:0001685
xref: MA:0000702
xref: ncithesaurus:Aorta_Smooth_Muscle_Tissue
is_a: UBERON:0002111 ! implied link automatically realized ! smooth muscle of artery
relationship: part_of UBERON:0000947
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000947 ! aorta
[Term]
id: UBERON:0004179
name: prostate glandular acinus
def: "The glandular acini are the saclike structures of the gland" [GO:0060525]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0004180
name: mammary gland fat
def: "The mammary fat is an adipose structure in the gland that is invaded by the mammary ducts" [GO:0060611]
synonym: "adipose tissue of lactiferous gland" EXACT [OBOL:automatic]
synonym: "adipose tissue of lobe of breast" EXACT [OBOL:automatic]
synonym: "adipose tissue of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "adipose tissue of mammary gland" EXACT [OBOL:automatic]
synonym: "fat tissue of lactiferous gland" EXACT [OBOL:automatic]
synonym: "fat tissue of lobe of breast" EXACT [OBOL:automatic]
synonym: "fat tissue of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "fat tissue of mammary gland" EXACT [OBOL:automatic]
synonym: "fatty tissue of lactiferous gland" EXACT [OBOL:automatic]
synonym: "fatty tissue of lobe of breast" EXACT [OBOL:automatic]
synonym: "fatty tissue of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "fatty tissue of mammary gland" EXACT [OBOL:automatic]
synonym: "lactiferous gland adipose tissue" EXACT [OBOL:automatic]
synonym: "lactiferous gland fat tissue" EXACT [OBOL:automatic]
synonym: "lactiferous gland fatty tissue" EXACT [OBOL:automatic]
synonym: "lobe of breast adipose tissue" EXACT [OBOL:automatic]
synonym: "lobe of breast fat tissue" EXACT [OBOL:automatic]
synonym: "lobe of breast fatty tissue" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland adipose tissue" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland fat tissue" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland fatty tissue" EXACT [OBOL:automatic]
synonym: "mammary gland adipose tissue" EXACT [OBOL:automatic]
synonym: "mammary gland fat tissue" EXACT [OBOL:automatic]
synonym: "mammary gland fatty tissue" EXACT [OBOL:automatic]
xref: MA:0002911
is_a: UBERON:0001013 ! implied link automatically realized ! adipose tissue
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001911
intersection_of: UBERON:0001013 ! adipose tissue
intersection_of: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0004181
name: mammary gland bud
def: "Mammary gland buds form by an outpocketing of the mammary placodes and grow to invade the mammary fat, when they form the mammary cord" [GO:0060648]
comment: TODO - mammary placode
is_a: UBERON:0003244 ! implied link automatically realized ! epithelium of mammary gland
is_a: UBERON:0005153 ! epithelial bud
relationship: part_of UBERON:0001765 ! lactiferous duct
[Term]
id: UBERON:0004182
name: mammary gland cord
def: "Mammary gland cords form when the mammary gland bud invades the mammary fat" [GO:0060652]
comment: TODO - mammary placode
is_a: UBERON:0003244 ! implied link automatically realized ! epithelium of mammary gland
is_a: UBERON:0005154 ! epithelial cord
relationship: part_of UBERON:0001765 ! lactiferous duct
[Term]
id: UBERON:0004183
name: labyrinthine layer blood vessel
def: "The embryonic vessels grow through the layer to come in close contact with the maternal blood supply" [GO:0060716]
synonym: "blood vessel of labyrinthine layer" EXACT [OBOL:automatic]
synonym: "blood vessel of labyrinthine layer of placenta" EXACT [OBOL:automatic]
synonym: "blood vessel of placenta labyrinth" EXACT [OBOL:automatic]
synonym: "labyrinthine layer of placenta blood vessel" EXACT [OBOL:automatic]
synonym: "placenta labyrinth blood vessel" EXACT [OBOL:automatic]
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0003946
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0003946 ! placenta labyrinth
[Term]
id: UBERON:0004184
name: prostate gland stroma
alt_id: UBERON:0005084
def: "The prostate gland stroma is made up of the mesenchymal or fibroblast cells of the prostate gland" [GO:0060741]
comment: TODO - check also FMA Stroma of glandular part of prostate
synonym: "prostate stroma" EXACT [OBOL:automatic]
synonym: "stroma of glandular part of prostate" NARROW [FMA:74349, OBOL:automatic]
synonym: "stroma of prostate" EXACT [OBOL:automatic]
synonym: "stroma of prostate gland" EXACT [OBOL:automatic]
xref: FMA:45719
xref: MA:0002912
xref: ncithesaurus:Prostatic_Stroma
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003891 ! implied link automatically realized ! stroma
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0002367
intersection_of: UBERON:0003891 ! stroma
intersection_of: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0004185
name: endodermal gut
def: "A portions of the gut that is derived from endoderm." [GO:0061031]
is_a: UBERON:0000481 ! implied link automatically realized ! multi-tissue structure
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: develops_from UBERON:0000925
relationship: part_of UBERON:0001555
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: develops_from UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0004186
name: olfactory bulb mitral cell layer
def: "The mitral cell layer is composed of pyramidal neurons whose cell bodies are located between the granule cell layer and the plexiform layer" [GO:0061034]
synonym: "mitral cell body layer" EXACT [NIF_GrossAnatomy:nlx_anat_100201]
xref: MA:0000973
xref: NIF_GrossAnatomy:nlx_anat_100201
is_a: UBERON:0004001 ! olfactory bulb layer
relationship: part_of UBERON:0002264 ! olfactory bulb
[Term]
id: UBERON:0004187
name: Harderian gland
def: "The Harderian gland is an anterior orbital structure usually associated with the nictitating membrane, and produces and secretes a variety of substances to the eye, depending upon the species[GO]. An accessory lacrimal gland on the inner side of the orbit in reptiles and birds but usually degenerate in mammals[BTO]." [GO:0070384]
xref: BTO:0000557
xref: EMAPA:19153
xref: GAID:1219
xref: MA:0001247
is_a: UBERON:0001821 ! sebaceous gland
is_a: UBERON:0004859 ! implied link automatically realized ! eye gland
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0004188
name: glomerular epithelium
def: "The glomerular epithelium is an epithelial tissue that covers the outer surfaces of the glomerulus. The glomerular epithelium consists of both parietal and visceral epithelium. Metanephric glomerular parietal epithelial cells are specialized epithelial cells that form tight junctions as a barrier to protein transport. A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros." [GO:0072010]
comment: TODO - check - GO says outer, BTO says inner. Make this a superclass
synonym: "epithelium of glomerulus" EXACT []
synonym: "epithelium of kidney glomerulus" EXACT []
synonym: "epithelium of renal glomerulus" EXACT []
synonym: "kidney glomerular epithelium" EXACT [MA:0002847]
xref: BTO:0001515
xref: MA:0002847
is_a: UBERON:0004211 ! implied link automatically realized ! nephron epithelium
relationship: part_of UBERON:0001230
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001230 ! glomerular capsule
[Term]
id: UBERON:0004189
name: glomerular endothelium
def: "The glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus" [GO:0072011]
synonym: "endothelium of renal glomerulus" EXACT [OBOL:automatic]
synonym: "renal glomerulus endothelium" EXACT [OBOL:automatic]
is_a: UBERON:0001986 ! implied link automatically realized ! endothelium
is_a: UBERON:0004211 ! implied link automatically realized ! nephron epithelium
relationship: part_of UBERON:0000074
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0000074 ! renal glomerulus
[Term]
id: UBERON:0004190
name: glomerulus vasculature
def: "The glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the glomerulus" [GO:0072012]
synonym: "renal glomerulus vascular network" EXACT [OBOL:automatic]
synonym: "renal glomerulus vasculature" EXACT [OBOL:automatic]
synonym: "vascular network of renal glomerulus" EXACT [OBOL:automatic]
synonym: "vasculature of renal glomerulus" EXACT [OBOL:automatic]
is_a: UBERON:0002049 ! implied link automatically realized ! vasculature
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0000074
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000074 ! renal glomerulus
[Term]
id: UBERON:0004191
name: glomus
def: "The glomus is the vascular component of the pronephros and filters waste from the blood before it enters the pronephric tubules" [GO:0072013]
comment: TODO - add is_a glomerulus
xref: XAO:0000318
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0004193
name: loop of Henle ascending limb thin segment
def: "A sub-portion of the loop of Henle in the nephron of the kidney that is permeable to ions but not to water" [GO:0072021, Wikipedia:Thin_ascending_limb_of_loop_of_Henle]
comment: check relationship to distal tubule
synonym: "ascending limb thin segment of loop of Henle" EXACT []
synonym: "ascending thin limb" EXACT [FMA:17720]
synonym: "thin ascending limb" EXACT [EMAPA:28328]
synonym: "thin ascending limb of loop of Henle" EXACT []
xref: EMAPA:28328
xref: EMAPA:28361
xref: FMA:17720
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
xref: MA:0001678
is_a: UBERON:0001231 ! renal tubule
relationship: part_of UBERON:0005164 ! ascending limb of loop of Henle
[Term]
id: UBERON:0004194
name: long nephron
def: "Long nephrons are associated with juxtamedullary glomeruli and extend to the inner medulla" [GO:0072029]
synonym: "juxtamedullary nephron" RELATED [GO:0072029, http://sourceforge.net/tracker/?func=detail&aid=3031362&group_id=36855&atid=440764]
is_a: UBERON:0001285 ! nephron
[Term]
id: UBERON:0004195
name: short nephron
def: "Short nephrons are associated with mid-cortical glomeruli, and have no short ascending limb, so the limb is situated in the outer medulla" [GO:0072030]
is_a: UBERON:0001285 ! nephron
[Term]
id: UBERON:0004196
name: S1 portion of tubule
def: "The S1 portion of the tubule is responsible for water reabsorption and is poorly permeable to chloride and urea" [GO:0072031]
comment: TODO - check FMA - anatomical relation
synonym: "S1" EXACT []
synonym: "S1 portion of renal tubule" EXACT []
xref: EMAPA:19356
xref: EMAPA:19387
xref: EMAPA:19576
xref: EMAPA:19588
xref: EMAPA:25170
xref: EMAPA:25236
xref: FMA:63522
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001287 ! proximal convoluted tubule
[Term]
id: UBERON:0004197
name: S2 portion of tubule
def: "The S2 portion of the tubule is involved in reabsorption of water and sodium chloride" [GO:0072032]
comment: TODO - check FMA - anatomical relation
synonym: "S2" EXACT []
synonym: "S2 portion of renal tubule" EXACT []
xref: EMAPA:19357
xref: EMAPA:19388
xref: EMAPA:19579
xref: EMAPA:19589
xref: EMAPA:25171
xref: EMAPA:25237
xref: FMA:63523
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001287 ! proximal convoluted tubule
[Term]
id: UBERON:0004198
name: comma-shaped body
def: "The comma-shaped body is the precursor structure to the S-shaped body that contributes to the morphogenesis of the nephron" [GO:0072049]
xref: EMAPA:27681
xref: EMAPA:27835
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0004209 ! renal vesicle
relationship: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0004199
name: S-shaped body
def: "The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron" [GO:0072050]
comment: TODO
synonym: "stage II nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html]
xref: EMAPA:27756
xref: EMAPA:27853
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0004198 ! comma-shaped body
relationship: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0004200
name: kidney pyramid
alt_id: UBERON:0002449
alt_id: UBERON:0005098
alt_id: UBERON:MA_0001654-FMA_258870
def: "Kidney pyramids are the conical masses that constitute the renal medulla in a multi-lobed mammalian kidney; they contain the loops of Henle and the medullary collecting ducts[GO]. One of a number of pyramidal masses seen on longitudinal section of the kidney; collectively, they constitute the renal medulla, and contain part of the secreting tubules and the collecting tubules[BTO]. Renal pyramids (or malpighian pyramids) are cone-shaped tissues of the kidney. The renal medulla is made up of 8 to 18 of these conical subdivisions. The broad base of each pyramid faces the renal cortex, and its apex, or papilla, points internally. The pyramids appear striped because they are formed by straight parallel segments of nephrons. [WP,unvetted]." [BTO:0003926, GO:0072056, Wikipedia:Renal_pyramids]
comment: not the same as FMA:50609 Pyramid (which is a volume / dimensional entity)
synonym: "malpighian pyramid" EXACT [Wikipedia:Renal_pyramids]
synonym: "medullary pyramid" RELATED []
synonym: "pyramid" BROAD [GO:0072056]
synonym: "pyramis renalis" RELATED [BTO:0003926]
synonym: "renal pyramid" EXACT [Wikipedia:Renal_pyramids]
xref: BTO:0003926
xref: FMA:258870
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png
xref: MA:0001654
xref: ncithesaurus:Renal_Pyramid
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000362 ! renal medulla
[Term]
id: UBERON:0004201
name: inner stripe
def: "The inner stripe is a deep, centrally located portion of the renal outer medulla and is traversed by thick and thin portions of nephron tubules" [GO:0072057]
synonym: "inner stripe of medulla of kidney" EXACT [FMA:76663]
synonym: "inner stripe of outer medulla" EXACT [EMAPA:29675]
synonym: "outer medulla inner stripe" EXACT [MA:0002626]
xref: EMAPA:29675
xref: FMA:76663
xref: MA:0002626
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001293 ! outer medulla of kidney
[Term]
id: UBERON:0004202
name: outer stripe
def: "The outer stripe is the region of the kidney that lies distal to the line of termination of the straight renal tubules" [GO:0072058]
synonym: "outer medulla outer stripe" EXACT [MA:0002629]
synonym: "outer stripe of medulla of kidney" EXACT [FMA:76662]
synonym: "outer stripe of outer medulla" EXACT [EMAPA:29663]
xref: EMAPA:29663
xref: FMA:76662
xref: MA:0002629
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001293 ! outer medulla of kidney
[Term]
id: UBERON:0004203
name: cortical collecting duct
def: "The cortical collecting duct is the portion of the collecting duct that resides in the renal cortex" [GO:0072059]
xref: EMAPA:28130
is_a: UBERON:0000058 ! implied link automatically realized ! duct
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001225
relationship: part_of UBERON:0001232
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0001225 ! cortex of kidney
intersection_of: part_of UBERON:0001232 ! collecting duct of renal tubule
[Term]
id: UBERON:0004204
name: outer medullary collecting duct
def: "The outer medullary collecting duct is the portion of the collecting duct that lies in the renal outer medulla" [GO:0072060]
xref: EMAPA:28346
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001232 ! collecting duct of renal tubule
[Term]
id: UBERON:0004205
name: inner medullary collecting duct
def: "The inner medullary collecting duct is the portion of the collecting duct that lies in the renal inner medulla" [GO:0072061]
xref: EMAPA:28370
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001232 ! collecting duct of renal tubule
[Term]
id: UBERON:0004206
name: long descending thin limb bend
def: "The long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment" [GO:0072065]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001289 ! descending limb of loop of Henle
[Term]
id: UBERON:0004207
name: prebend segment
def: "The prebend segment is a part of the descending thin limb that lies before the bend and exhibits robust sodium chloride reabsorption" [GO:0072066]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001289 ! descending limb of loop of Henle
[Term]
id: UBERON:0004208
name: nephrogenic mesenchyme
def: "Nephrogenic mesenchyme is the tissue made up of loosely connected mesenchymal cells in the nephron" [GO:0072076]
comment: The detailed events associated with the differentiation of the nephrogenic mesenchyme are somewhat complex. It has been suggested that each terminal branch of the ureteric bud stimulates the associated cap mesenchyme tissue to form a renal vesicle (the most primitive stage of nephron development: a stage I nephron). This then elongates, becomes a comma-shaped and then an S-shaped body (stage II nephron), and makes contact with and fuses with the distal component of the ureteric bud. The latter then forms the collecting duct. One fold of the S-shaped body gives rise to Bowman’s capsule (also termed the glomerular capsule). Soon afterwards, endothelial cells invade to make a capillary knot-like outgrowth, the glomerular tuft, which goes on to form the glomerulus. The inner epithelial layer of the Bowman’s capsule (also called the visceral epithelium, or podocyte layer because it consists of podocytes) is closely apposed to the endothelial glomerulus. Together, the Bowman’s capsule and the glomerulus comprise the definitive renal corpuscle. The rest of the nephron elongates to form components of the proximal tubule, the loop of Henle and the distal tubule. The distal pole of the developing nephron connects to the ureteric bud that induced it at an early stage of nephron/ collecting duct development, before differentiation of the proximal tubule, the loop of Henle and the distal tubule are complete. This connection allows the excretory products produced by the kidney to be removed and subsequently transferred, via the ureter, into the bladder where they are stored until it is appropriate to empty the bladder. [http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron]
synonym: "mesenchyme of nephron" EXACT [OBOL:automatic]
synonym: "nephron mesenchyme" EXACT [OBOL:automatic]
is_a: UBERON:0003918 ! implied link automatically realized ! mesenchyme of kidney
relationship: part_of UBERON:0001285
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0004209
name: renal vesicle
def: "The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells" [GO:0072077]
comment: TODO - make a more specific develops_from relationship - see UBERON:0005107
synonym: "stage I nephron" EXACT [http://www.gudmap.org/Organ_Summaries/Metanephros/Renal_vesicle.html]
xref: EMAPA:27678
xref: EMAPA:27829
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0004208 ! nephrogenic mesenchyme
relationship: induced_by UBERON:0000084 ! ureteric bud
relationship: part_of UBERON:0000483 ! epithelium
relationship: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0004211
name: nephron epithelium
def: "The nephron epithelium is a tissue that covers the surface of a nephron" [GO:0072088]
synonym: "epithelial tissue of nephron" EXACT [OBOL:automatic]
synonym: "epithelium of nephron" EXACT [OBOL:automatic]
synonym: "nephron epithelial tissue" EXACT [OBOL:automatic]
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004819 ! implied link automatically realized ! kidney epithelium
relationship: part_of UBERON:0001285
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0004212
name: glomerular capillary
def: "A capillary that is part of a renal glomerulus [Obol]." [OBOL:automatic]
synonym: "blood capillary of renal glomerulus" EXACT [OBOL:automatic]
synonym: "capillary of renal glomerulus" EXACT [OBOL:automatic]
synonym: "capillary vessel of renal glomerulus" EXACT [OBOL:automatic]
synonym: "renal glomerulus blood capillary" EXACT [OBOL:automatic]
synonym: "renal glomerulus capillary" EXACT [OBOL:automatic]
synonym: "renal glomerulus capillary vessel" EXACT [OBOL:automatic]
xref: MA:0002587
xref: ncithesaurus:Glomerular_Capillary
xref: ZFA:0005284
is_a: UBERON:0003527 ! implied link automatically realized ! kidney capillary
relationship: part_of UBERON:0000074
intersection_of: UBERON:0001982 ! capillary
intersection_of: part_of UBERON:0000074 ! renal glomerulus
[Term]
id: UBERON:0004214
name: upper leg nerve
def: "A nerve that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
synonym: "hind limb stylopod nerve" EXACT [OBOL:automatic]
synonym: "hindlimb stylopod nerve" EXACT [OBOL:automatic]
synonym: "inferior member stylopod nerve" EXACT [OBOL:automatic]
synonym: "lower extremity stylopod nerve" EXACT [OBOL:automatic]
synonym: "nerve of hind limb stylopod" EXACT [OBOL:automatic]
synonym: "nerve of hindlimb stylopod" EXACT [OBOL:automatic]
synonym: "nerve of inferior member stylopod" EXACT [OBOL:automatic]
synonym: "nerve of lower extremity stylopod" EXACT [OBOL:automatic]
synonym: "nerve of Proximal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "nerve of stylopod of hind limb" EXACT [OBOL:automatic]
synonym: "nerve of stylopod of hindlimb" EXACT [OBOL:automatic]
synonym: "nerve of stylopod of inferior member" EXACT [OBOL:automatic]
synonym: "nerve of stylopod of lower extremity" EXACT [OBOL:automatic]
synonym: "nerve of stylopod of lower limb" EXACT [OBOL:automatic]
synonym: "nerve of thigh" EXACT [OBOL:automatic]
synonym: "nerve of upper leg" EXACT [OBOL:automatic]
synonym: "Proximal segment of free lower limb nerve" EXACT [OBOL:automatic]
synonym: "stylopod of hind limb nerve" EXACT [OBOL:automatic]
synonym: "stylopod of hindlimb nerve" EXACT [OBOL:automatic]
synonym: "stylopod of inferior member nerve" EXACT [OBOL:automatic]
synonym: "stylopod of lower extremity nerve" EXACT [OBOL:automatic]
synonym: "stylopod of lower limb nerve" EXACT [OBOL:automatic]
synonym: "thigh nerve" EXACT [OBOL:automatic]
xref: MA:0000685
is_a: UBERON:0003442 ! implied link automatically realized ! hindlimb nerve
relationship: part_of UBERON:0000376
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0004215
name: back nerve
def: "A nerve that is part of a back [Obol]." [OBOL:automatic]
synonym: "nerve of back" EXACT [OBOL:automatic]
xref: MA:0000497
is_a: UBERON:0003439 ! implied link automatically realized ! trunk nerve
relationship: part_of UBERON:0001137
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001137 ! back
[Term]
id: UBERON:0004216
name: lower arm nerve
def: "A nerve that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "antebrachial region nerve" EXACT [OBOL:automatic]
synonym: "arm middle limb segment nerve" EXACT [OBOL:automatic]
synonym: "arm zeugopod nerve" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment nerve" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod nerve" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb nerve" EXACT [OBOL:automatic]
synonym: "lower segment of arm nerve" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm nerve" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region nerve" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb nerve" EXACT [OBOL:automatic]
synonym: "nerve of antebrachial region" EXACT [OBOL:automatic]
synonym: "nerve of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "nerve of arm zeugopod" EXACT [OBOL:automatic]
synonym: "nerve of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "nerve of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "nerve of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "nerve of lower arm" EXACT [OBOL:automatic]
synonym: "nerve of lower segment of arm" EXACT [OBOL:automatic]
synonym: "nerve of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "nerve of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "nerve of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "nerve of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "nerve of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "nerve of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "nerve of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "nerve of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment nerve" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod nerve" EXACT [OBOL:automatic]
synonym: "zeugopod of arm nerve" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region nerve" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb nerve" EXACT [OBOL:automatic]
xref: MA:0000601
is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve
relationship: part_of UBERON:0002386
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0004217
name: upper arm nerve
def: "A nerve that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
synonym: "arm stylopod nerve" EXACT [OBOL:automatic]
synonym: "brachial region stylopod nerve" EXACT [OBOL:automatic]
synonym: "nerve of arm stylopod" EXACT [OBOL:automatic]
synonym: "nerve of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "nerve of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "nerve of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "nerve of stylopod of arm" EXACT [OBOL:automatic]
synonym: "nerve of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "nerve of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "nerve of upper arm" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb nerve" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod nerve" EXACT [OBOL:automatic]
synonym: "stylopod of arm nerve" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region nerve" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb nerve" EXACT [OBOL:automatic]
xref: MA:0000607
is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve
relationship: part_of UBERON:0003822
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0004218
name: lower leg nerve
def: "A nerve that is part of a lower leg [Obol]." [OBOL:automatic]
synonym: "hind limb middle limb segment nerve" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod nerve" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment nerve" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod nerve" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment nerve" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod nerve" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb nerve" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment nerve" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod nerve" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb nerve" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb nerve" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member nerve" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity nerve" EXACT [OBOL:automatic]
synonym: "nerve of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "nerve of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "nerve of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "nerve of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "nerve of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "nerve of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "nerve of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "nerve of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "nerve of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "nerve of lower leg" EXACT [OBOL:automatic]
synonym: "nerve of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "nerve of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "nerve of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "nerve of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "nerve of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "nerve of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "nerve of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "nerve of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "nerve of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb nerve" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb nerve" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member nerve" EXACT [OBOL:automatic]
synonym: "zeugopod of leg nerve" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity nerve" EXACT [OBOL:automatic]
xref: MA:0000679
is_a: UBERON:0003442 ! implied link automatically realized ! hindlimb nerve
relationship: part_of UBERON:0003823
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0004219
name: urethra smooth muscle
def: "A portion of smooth muscle tissue that is part of a urethra [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of urethra" EXACT [OBOL:automatic]
synonym: "non-striated muscle of urethra" EXACT [OBOL:automatic]
synonym: "smooth muscle of urethra" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of urethra" EXACT [OBOL:automatic]
synonym: "urethra involuntary muscle" EXACT [OBOL:automatic]
synonym: "urethra non-striated muscle" EXACT [OBOL:automatic]
synonym: "urethra smooth muscle tissue" EXACT [OBOL:automatic]
xref: MA:0001691
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
relationship: part_of UBERON:0000057
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0004220
name: large intestine smooth muscle
def: "A portion of smooth muscle tissue that is part of a large intestine [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of large intestine" EXACT [OBOL:automatic]
synonym: "large intestine involuntary muscle" EXACT [OBOL:automatic]
synonym: "large intestine non-striated muscle" EXACT [OBOL:automatic]
synonym: "large intestine smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of large intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle of large intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of large intestine" EXACT [OBOL:automatic]
xref: MA:0001547
is_a: UBERON:0004221 ! implied link automatically realized ! intestine smooth muscle
relationship: part_of UBERON:0000059
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000059 ! large intestine
[Term]
id: UBERON:0004221
name: intestine smooth muscle
def: "A portion of smooth muscle tissue that is part of a intestine [Obol]." [OBOL:automatic]
synonym: "bowel involuntary muscle" EXACT [OBOL:automatic]
synonym: "bowel non-striated muscle" EXACT [OBOL:automatic]
synonym: "bowel smooth muscle" EXACT [OBOL:automatic]
synonym: "bowel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "intestine involuntary muscle" EXACT [OBOL:automatic]
synonym: "intestine non-striated muscle" EXACT [OBOL:automatic]
synonym: "intestine smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bowel" EXACT [OBOL:automatic]
synonym: "involuntary muscle of intestine" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bowel" EXACT [OBOL:automatic]
synonym: "non-striated muscle of intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle of bowel" EXACT [OBOL:automatic]
synonym: "smooth muscle of intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bowel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of intestine" EXACT [OBOL:automatic]
xref: MA:0001539
xref: ncithesaurus:Intestinal_Smooth_Muscle_Tissue
is_a: UBERON:0004226 ! implied link automatically realized ! gastrointestinal system smooth muscle
relationship: part_of UBERON:0000160
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000160 ! intestine
[Term]
id: UBERON:0004222
name: stomach smooth muscle
def: "A portion of smooth muscle tissue that is part of a stomach [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of stomach" EXACT [OBOL:automatic]
synonym: "involuntary muscle of ventriculus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of stomach" EXACT [OBOL:automatic]
synonym: "non-striated muscle of ventriculus" EXACT [OBOL:automatic]
synonym: "smooth muscle of stomach" EXACT [OBOL:automatic]
synonym: "smooth muscle of ventriculus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of stomach" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of ventriculus" EXACT [OBOL:automatic]
synonym: "stomach involuntary muscle" EXACT [OBOL:automatic]
synonym: "stomach non-striated muscle" EXACT [OBOL:automatic]
synonym: "stomach smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "ventriculus involuntary muscle" EXACT [OBOL:automatic]
synonym: "ventriculus non-striated muscle" EXACT [OBOL:automatic]
synonym: "ventriculus smooth muscle" EXACT [OBOL:automatic]
synonym: "ventriculus smooth muscle tissue" EXACT [OBOL:automatic]
xref: BTO:0001818
xref: MA:0001627
is_a: UBERON:0004226 ! implied link automatically realized ! gastrointestinal system smooth muscle
relationship: part_of UBERON:0000945
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0004223
name: vagina smooth muscle
def: "A portion of smooth muscle tissue that is part of a vagina [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of vagina" EXACT [OBOL:automatic]
synonym: "non-striated muscle of vagina" EXACT [OBOL:automatic]
synonym: "smooth muscle of vagina" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of vagina" EXACT [OBOL:automatic]
synonym: "vagina involuntary muscle" EXACT [OBOL:automatic]
synonym: "vagina non-striated muscle" EXACT [OBOL:automatic]
synonym: "vagina smooth muscle tissue" EXACT [OBOL:automatic]
xref: MA:0001733
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000996
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0004224
name: vas deferens smooth muscle
def: "A portion of smooth muscle tissue that is part of a vas deferens [Obol]." [OBOL:automatic]
synonym: "deferent duct involuntary muscle" EXACT [OBOL:automatic]
synonym: "deferent duct non-striated muscle" EXACT [OBOL:automatic]
synonym: "deferent duct smooth muscle" EXACT [OBOL:automatic]
synonym: "deferent duct smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "ductus deferens involuntary muscle" EXACT [OBOL:automatic]
synonym: "ductus deferens non-striated muscle" EXACT [OBOL:automatic]
synonym: "ductus deferens smooth muscle" EXACT [OBOL:automatic]
synonym: "ductus deferens smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of deferent duct" EXACT [OBOL:automatic]
synonym: "involuntary muscle of ductus deferens" EXACT [OBOL:automatic]
synonym: "involuntary muscle of sperm duct" EXACT [OBOL:automatic]
synonym: "involuntary muscle of vas deferen" EXACT [OBOL:automatic]
synonym: "involuntary muscle of vas deferens" EXACT [OBOL:automatic]
synonym: "non-striated muscle of deferent duct" EXACT [OBOL:automatic]
synonym: "non-striated muscle of ductus deferens" EXACT [OBOL:automatic]
synonym: "non-striated muscle of sperm duct" EXACT [OBOL:automatic]
synonym: "non-striated muscle of vas deferen" EXACT [OBOL:automatic]
synonym: "non-striated muscle of vas deferens" EXACT [OBOL:automatic]
synonym: "smooth muscle of deferent duct" EXACT [OBOL:automatic]
synonym: "smooth muscle of ductus deferens" EXACT [OBOL:automatic]
synonym: "smooth muscle of sperm duct" EXACT [OBOL:automatic]
synonym: "smooth muscle of vas deferen" EXACT [OBOL:automatic]
synonym: "smooth muscle of vas deferens" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of deferent duct" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of ductus deferens" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of sperm duct" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of vas deferen" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of vas deferens" EXACT [OBOL:automatic]
synonym: "sperm duct involuntary muscle" EXACT [OBOL:automatic]
synonym: "sperm duct non-striated muscle" EXACT [OBOL:automatic]
synonym: "sperm duct smooth muscle" EXACT [OBOL:automatic]
synonym: "sperm duct smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "vas deferen involuntary muscle" EXACT [OBOL:automatic]
synonym: "vas deferen non-striated muscle" EXACT [OBOL:automatic]
synonym: "vas deferen smooth muscle" EXACT [OBOL:automatic]
synonym: "vas deferen smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "vas deferens involuntary muscle" EXACT [OBOL:automatic]
synonym: "vas deferens non-striated muscle" EXACT [OBOL:automatic]
synonym: "vas deferens smooth muscle tissue" EXACT [OBOL:automatic]
xref: MA:0001750
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001000
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001000 ! vas deferens
[Term]
id: UBERON:0004225
name: respiratory system smooth muscle
def: "A portion of smooth muscle tissue that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius involuntary muscle" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius non-striated muscle" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius smooth muscle" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "involuntary muscle of respiratory system" EXACT [OBOL:automatic]
synonym: "non-striated muscle of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "non-striated muscle of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system involuntary muscle" EXACT [OBOL:automatic]
synonym: "respiratory system non-striated muscle" EXACT [OBOL:automatic]
synonym: "respiratory system smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "smooth muscle of respiratory system" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001830
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004226
name: gastrointestinal system smooth muscle
def: "A portion of smooth muscle tissue that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system involuntary muscle" EXACT [OBOL:automatic]
synonym: "digestive system non-striated muscle" EXACT [OBOL:automatic]
synonym: "digestive system smooth muscle" EXACT [OBOL:automatic]
synonym: "digestive system smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "gastrointestinal system involuntary muscle" EXACT [OBOL:automatic]
synonym: "gastrointestinal system non-striated muscle" EXACT [OBOL:automatic]
synonym: "gastrointestinal system smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of digestive system" EXACT [OBOL:automatic]
synonym: "involuntary muscle of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "non-striated muscle of digestive system" EXACT [OBOL:automatic]
synonym: "non-striated muscle of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "smooth muscle of digestive system" EXACT [OBOL:automatic]
synonym: "smooth muscle of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of digestive system" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of gastrointestinal system" EXACT [OBOL:automatic]
xref: MA:0001523
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
relationship: part_of UBERON:0001007
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0004227
name: kidney pelvis smooth muscle
def: "A portion of smooth muscle tissue that is part of a renal pelvis [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of kidney pelvis" EXACT [OBOL:automatic]
synonym: "involuntary muscle of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "involuntary muscle of renal pelvis" EXACT [OBOL:automatic]
synonym: "kidney pelvis involuntary muscle" EXACT [OBOL:automatic]
synonym: "kidney pelvis non-striated muscle" EXACT [OBOL:automatic]
synonym: "kidney pelvis smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of kidney pelvis" EXACT [OBOL:automatic]
synonym: "non-striated muscle of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "non-striated muscle of renal pelvis" EXACT [OBOL:automatic]
synonym: "pelvis of ureter involuntary muscle" EXACT [OBOL:automatic]
synonym: "pelvis of ureter non-striated muscle" EXACT [OBOL:automatic]
synonym: "pelvis of ureter smooth muscle" EXACT [OBOL:automatic]
synonym: "pelvis of ureter smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "renal pelvis involuntary muscle" EXACT [OBOL:automatic]
synonym: "renal pelvis non-striated muscle" EXACT [OBOL:automatic]
synonym: "renal pelvis smooth muscle" EXACT [OBOL:automatic]
synonym: "renal pelvis smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of kidney pelvis" EXACT [OBOL:automatic]
synonym: "smooth muscle of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "smooth muscle of renal pelvis" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of kidney pelvis" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of renal pelvis" EXACT [OBOL:automatic]
xref: FMA:262022
xref: MA:0002631
is_a: UBERON:0005321 ! implied link automatically realized ! mesonephric smooth muscle tissue
relationship: part_of UBERON:0001224
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001224 ! renal pelvis
[Term]
id: UBERON:0004228
name: urinary bladder smooth muscle
def: "A portion of smooth muscle tissue that is part of a urinary bladder [Obol]." [OBOL:automatic]
synonym: "bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "bladder smooth muscle" EXACT [OBOL:automatic]
synonym: "bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of urinary bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of urinary bladder" EXACT [OBOL:automatic]
synonym: "urinary bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder smooth muscle tissue" EXACT [OBOL:automatic]
xref: BTO:0001849
xref: MA:0001697
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
relationship: part_of UBERON:0001255
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0004229
name: urinary bladder trigone smooth muscle
def: "A portion of smooth muscle tissue that is part of a trigone of urinary bladder [Obol]." [OBOL:automatic]
synonym: "deep trigone involuntary muscle" EXACT [OBOL:automatic]
synonym: "deep trigone non-striated muscle" EXACT [OBOL:automatic]
synonym: "deep trigone smooth muscle" EXACT [OBOL:automatic]
synonym: "deep trigone smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of deep trigone" EXACT [OBOL:automatic]
synonym: "involuntary muscle of Lieutaud's trigone" EXACT [OBOL:automatic]
synonym: "involuntary muscle of trigone of bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "involuntary muscle of vesical trigone" EXACT [OBOL:automatic]
synonym: "Lieutaud's trigone involuntary muscle" EXACT [OBOL:automatic]
synonym: "Lieutaud's trigone non-striated muscle" EXACT [OBOL:automatic]
synonym: "Lieutaud's trigone smooth muscle" EXACT [OBOL:automatic]
synonym: "Lieutaud's trigone smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of deep trigone" EXACT [OBOL:automatic]
synonym: "non-striated muscle of Lieutaud's trigone" EXACT [OBOL:automatic]
synonym: "non-striated muscle of trigone of bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "non-striated muscle of vesical trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle of deep trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle of Lieutaud's trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle of trigone of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle of vesical trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of deep trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of Lieutaud's trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of trigone of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of vesical trigone" EXACT [OBOL:automatic]
synonym: "trigone of bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "trigone of bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "trigone of bladder smooth muscle" EXACT [OBOL:automatic]
synonym: "trigone of bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder smooth muscle" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone involuntary muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone non-striated muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "vesical trigone involuntary muscle" EXACT [OBOL:automatic]
synonym: "vesical trigone non-striated muscle" EXACT [OBOL:automatic]
synonym: "vesical trigone smooth muscle" EXACT [OBOL:automatic]
synonym: "vesical trigone smooth muscle tissue" EXACT [OBOL:automatic]
xref: MA:0001700
is_a: UBERON:0004228 ! implied link automatically realized ! urinary bladder smooth muscle
relationship: part_of UBERON:0001257
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001257 ! trigone of urinary bladder
[Term]
id: UBERON:0004230
name: urinary bladder neck smooth muscle
def: "A portion of smooth muscle tissue that is part of a neck of urinary bladder [Obol]." [OBOL:automatic]
synonym: "bladder neck involuntary muscle" EXACT [OBOL:automatic]
synonym: "bladder neck non-striated muscle" EXACT [OBOL:automatic]
synonym: "bladder neck smooth muscle" EXACT [OBOL:automatic]
synonym: "bladder neck smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bladder neck" EXACT [OBOL:automatic]
synonym: "involuntary muscle of neck of bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "involuntary muscle of vesical neck" EXACT [OBOL:automatic]
synonym: "neck of bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "neck of bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "neck of bladder smooth muscle" EXACT [OBOL:automatic]
synonym: "neck of bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder smooth muscle" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bladder neck" EXACT [OBOL:automatic]
synonym: "non-striated muscle of neck of bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "non-striated muscle of vesical neck" EXACT [OBOL:automatic]
synonym: "smooth muscle of bladder neck" EXACT [OBOL:automatic]
synonym: "smooth muscle of neck of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "smooth muscle of vesical neck" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bladder neck" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of neck of bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of vesical neck" EXACT [OBOL:automatic]
synonym: "urinary bladder neck involuntary muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder neck non-striated muscle" EXACT [OBOL:automatic]
synonym: "urinary bladder neck smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "vesical neck involuntary muscle" EXACT [OBOL:automatic]
synonym: "vesical neck non-striated muscle" EXACT [OBOL:automatic]
synonym: "vesical neck smooth muscle" EXACT [OBOL:automatic]
synonym: "vesical neck smooth muscle tissue" EXACT [OBOL:automatic]
xref: MA:0001699
is_a: UBERON:0004228 ! implied link automatically realized ! urinary bladder smooth muscle
relationship: part_of UBERON:0001258
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001258 ! neck of urinary bladder
[Term]
id: UBERON:0004231
name: anal region smooth muscle
def: "A portion of smooth muscle tissue that is part of an anal region [Obol]." [OBOL:automatic]
synonym: "anal part of perineum involuntary muscle" EXACT [OBOL:automatic]
synonym: "anal part of perineum non-striated muscle" EXACT [OBOL:automatic]
synonym: "anal part of perineum smooth muscle" EXACT [OBOL:automatic]
synonym: "anal part of perineum smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "anal region involuntary muscle" EXACT [OBOL:automatic]
synonym: "anal region non-striated muscle" EXACT [OBOL:automatic]
synonym: "anal region smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "anal triangle involuntary muscle" EXACT [OBOL:automatic]
synonym: "anal triangle non-striated muscle" EXACT [OBOL:automatic]
synonym: "anal triangle smooth muscle" EXACT [OBOL:automatic]
synonym: "anal triangle smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of anal part of perineum" EXACT [OBOL:automatic]
synonym: "involuntary muscle of anal region" EXACT [OBOL:automatic]
synonym: "involuntary muscle of anal triangle" EXACT [OBOL:automatic]
synonym: "non-striated muscle of anal part of perineum" EXACT [OBOL:automatic]
synonym: "non-striated muscle of anal region" EXACT [OBOL:automatic]
synonym: "non-striated muscle of anal triangle" EXACT [OBOL:automatic]
synonym: "smooth muscle of anal part of perineum" EXACT [OBOL:automatic]
synonym: "smooth muscle of anal region" EXACT [OBOL:automatic]
synonym: "smooth muscle of anal triangle" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of anal part of perineum" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of anal region" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of anal triangle" EXACT [OBOL:automatic]
xref: MA:0001532
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
relationship: part_of UBERON:0001353
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001353 ! anal region
[Term]
id: UBERON:0004232
name: lymphatic vessel smooth muscle
def: "A portion of smooth muscle tissue that is part of a lymphatic vessel [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of lymph vessel" EXACT [OBOL:automatic]
synonym: "involuntary muscle of lymphatic vessel" EXACT [OBOL:automatic]
synonym: "lymph vessel involuntary muscle" EXACT [OBOL:automatic]
synonym: "lymph vessel non-striated muscle" EXACT [OBOL:automatic]
synonym: "lymph vessel smooth muscle" EXACT [OBOL:automatic]
synonym: "lymph vessel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "lymphatic vessel involuntary muscle" EXACT [OBOL:automatic]
synonym: "lymphatic vessel non-striated muscle" EXACT [OBOL:automatic]
synonym: "lymphatic vessel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lymph vessel" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lymphatic vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle of lymph vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle of lymphatic vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lymph vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lymphatic vessel" EXACT [OBOL:automatic]
xref: MA:0000751
xref: ncithesaurus:Lymphatic_Vessel_Smooth_Muscle_Tissue
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
relationship: part_of UBERON:0001473
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001473 ! lymphatic vessel
[Term]
id: UBERON:0004233
name: lower respiratory tract smooth muscle
def: "A portion of smooth muscle tissue that is part of a lower respiratory tract [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "lower respiratory tract involuntary muscle" EXACT [OBOL:automatic]
synonym: "lower respiratory tract non-striated muscle" EXACT [OBOL:automatic]
synonym: "lower respiratory tract smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "smooth muscle of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lower respiratory tract" EXACT [OBOL:automatic]
xref: MA:0002410
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004225 ! implied link automatically realized ! respiratory system smooth muscle
relationship: part_of UBERON:0001558
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001558 ! lower respiratory tract
[Term]
id: UBERON:0004234
name: iris smooth muscle
def: "A portion of smooth muscle tissue that is part of a iris [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of iris" EXACT [OBOL:automatic]
synonym: "iris involuntary muscle" EXACT [OBOL:automatic]
synonym: "iris non-striated muscle" EXACT [OBOL:automatic]
synonym: "iris smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of iris" EXACT [OBOL:automatic]
synonym: "smooth muscle of iris" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of iris" EXACT [OBOL:automatic]
xref: BTO:0000655
xref: MA:0001270
is_a: UBERON:0003386 ! implied link automatically realized ! smooth muscle of eye
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001769
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0004235
name: mammary gland smooth muscle
def: "A portion of smooth muscle tissue that is part of a lactiferous gland [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of lactiferous gland" EXACT [OBOL:automatic]
synonym: "involuntary muscle of lobe of breast" EXACT [OBOL:automatic]
synonym: "involuntary muscle of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "involuntary muscle of mammary gland" EXACT [OBOL:automatic]
synonym: "lactiferous gland involuntary muscle" EXACT [OBOL:automatic]
synonym: "lactiferous gland non-striated muscle" EXACT [OBOL:automatic]
synonym: "lactiferous gland smooth muscle" EXACT [OBOL:automatic]
synonym: "lactiferous gland smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "lobe of breast involuntary muscle" EXACT [OBOL:automatic]
synonym: "lobe of breast non-striated muscle" EXACT [OBOL:automatic]
synonym: "lobe of breast smooth muscle" EXACT [OBOL:automatic]
synonym: "lobe of breast smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland involuntary muscle" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland non-striated muscle" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland smooth muscle" EXACT [OBOL:automatic]
synonym: "lobe of mammary gland smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "mammary gland involuntary muscle" EXACT [OBOL:automatic]
synonym: "mammary gland non-striated muscle" EXACT [OBOL:automatic]
synonym: "mammary gland smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lactiferous gland" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lobe of breast" EXACT [OBOL:automatic]
synonym: "non-striated muscle of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "non-striated muscle of mammary gland" EXACT [OBOL:automatic]
synonym: "smooth muscle of lactiferous gland" EXACT [OBOL:automatic]
synonym: "smooth muscle of lobe of breast" EXACT [OBOL:automatic]
synonym: "smooth muscle of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "smooth muscle of mammary gland" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lactiferous gland" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lobe of breast" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of lobe of mammary gland" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of mammary gland" EXACT [OBOL:automatic]
xref: MA:0000795
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001911
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001911 ! mammary gland
[Term]
id: UBERON:0004236
name: arteriole smooth muscle
def: "A portion of smooth muscle tissue that is part of an arteriole [Obol]." [OBOL:automatic]
xref: MA:0000706
is_a: UBERON:0002111 ! implied link automatically realized ! smooth muscle of artery
relationship: part_of UBERON:0001980
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001980 ! arteriole
[Term]
id: UBERON:0004237
name: blood vessel smooth muscle
def: "A portion of smooth muscle tissue that is part of a blood vessel [Obol]." [OBOL:automatic]
synonym: "blood vessel involuntary muscle" EXACT [OBOL:automatic]
synonym: "blood vessel non-striated muscle" EXACT [OBOL:automatic]
synonym: "blood vessel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of blood vessel" EXACT [OBOL:automatic]
synonym: "non-striated muscle of blood vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle of blood vessel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of blood vessel" EXACT [OBOL:automatic]
xref: MA:0000710
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
relationship: part_of UBERON:0001981
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0004238
name: spleen smooth muscle
def: "A portion of smooth muscle tissue that is part of a spleen [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of spleen" EXACT [OBOL:automatic]
synonym: "non-striated muscle of spleen" EXACT [OBOL:automatic]
synonym: "smooth muscle of spleen" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of spleen" EXACT [OBOL:automatic]
synonym: "spleen involuntary muscle" EXACT [OBOL:automatic]
synonym: "spleen non-striated muscle" EXACT [OBOL:automatic]
synonym: "spleen smooth muscle tissue" EXACT [OBOL:automatic]
xref: MA:0000757
is_a: UBERON:0004226 ! implied link automatically realized ! gastrointestinal system smooth muscle
relationship: part_of UBERON:0002106
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0004239
name: small intestine smooth muscle
def: "A portion of smooth muscle tissue that is part of a small intestine [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of small bowel" EXACT [OBOL:automatic]
synonym: "involuntary muscle of small intestine" EXACT [OBOL:automatic]
synonym: "non-striated muscle of small bowel" EXACT [OBOL:automatic]
synonym: "non-striated muscle of small intestine" EXACT [OBOL:automatic]
synonym: "small bowel involuntary muscle" EXACT [OBOL:automatic]
synonym: "small bowel non-striated muscle" EXACT [OBOL:automatic]
synonym: "small bowel smooth muscle" EXACT [OBOL:automatic]
synonym: "small bowel smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "small intestine involuntary muscle" EXACT [OBOL:automatic]
synonym: "small intestine non-striated muscle" EXACT [OBOL:automatic]
synonym: "small intestine smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of small bowel" EXACT [OBOL:automatic]
synonym: "smooth muscle of small intestine" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of small bowel" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of small intestine" EXACT [OBOL:automatic]
xref: MA:0001559
is_a: UBERON:0004221 ! implied link automatically realized ! intestine smooth muscle
relationship: part_of UBERON:0002108
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0004240
name: gall bladder smooth muscle
def: "A portion of smooth muscle tissue that is part of a gallbladder [Obol]." [OBOL:automatic]
synonym: "gall bladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "gall bladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "gall bladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "gallbladder involuntary muscle" EXACT [OBOL:automatic]
synonym: "gallbladder non-striated muscle" EXACT [OBOL:automatic]
synonym: "gallbladder smooth muscle" EXACT [OBOL:automatic]
synonym: "gallbladder smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of gall bladder" EXACT [OBOL:automatic]
synonym: "involuntary muscle of gallbladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of gall bladder" EXACT [OBOL:automatic]
synonym: "non-striated muscle of gallbladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of gall bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle of gallbladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of gall bladder" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of gallbladder" EXACT [OBOL:automatic]
xref: MA:0001635
xref: ncithesaurus:Gallbladder_Smooth_Muscle_Tissue
is_a: UBERON:0004226 ! implied link automatically realized ! gastrointestinal system smooth muscle
relationship: part_of UBERON:0002110
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002110 ! gallbladder
[Term]
id: UBERON:0004241
name: main bronchus smooth muscle
def: "A portion of smooth muscle tissue that is part of a main bronchus [Obol]." [OBOL:automatic]
synonym: "bronchus principalis involuntary muscle" EXACT [OBOL:automatic]
synonym: "bronchus principalis non-striated muscle" EXACT [OBOL:automatic]
synonym: "bronchus principalis smooth muscle" EXACT [OBOL:automatic]
synonym: "bronchus principalis smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bronchus principalis" EXACT [OBOL:automatic]
synonym: "involuntary muscle of main bronchus" EXACT [OBOL:automatic]
synonym: "involuntary muscle of primary bronchus" EXACT [OBOL:automatic]
synonym: "involuntary muscle of principal bronchus" EXACT [OBOL:automatic]
synonym: "main bronchus involuntary muscle" EXACT [OBOL:automatic]
synonym: "main bronchus non-striated muscle" EXACT [OBOL:automatic]
synonym: "main bronchus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bronchus principalis" EXACT [OBOL:automatic]
synonym: "non-striated muscle of main bronchus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of primary bronchus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of principal bronchus" EXACT [OBOL:automatic]
synonym: "primary bronchus involuntary muscle" EXACT [OBOL:automatic]
synonym: "primary bronchus non-striated muscle" EXACT [OBOL:automatic]
synonym: "primary bronchus smooth muscle" EXACT [OBOL:automatic]
synonym: "primary bronchus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "principal bronchus involuntary muscle" EXACT [OBOL:automatic]
synonym: "principal bronchus non-striated muscle" EXACT [OBOL:automatic]
synonym: "principal bronchus smooth muscle" EXACT [OBOL:automatic]
synonym: "principal bronchus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of bronchus principalis" EXACT [OBOL:automatic]
synonym: "smooth muscle of main bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle of primary bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle of principal bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bronchus principalis" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of main bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of primary bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of principal bronchus" EXACT [OBOL:automatic]
xref: MA:0001848
is_a: UBERON:0004242 ! implied link automatically realized ! bronchus smooth muscle
relationship: part_of UBERON:0002182
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0004242
name: bronchus smooth muscle
def: "A portion of smooth muscle tissue that is part of a bronchus [Obol]." [OBOL:automatic]
synonym: "bronchi involuntary muscle" EXACT [OBOL:automatic]
synonym: "bronchi non-striated muscle" EXACT [OBOL:automatic]
synonym: "bronchi smooth muscle" EXACT [OBOL:automatic]
synonym: "bronchi smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk involuntary muscle" EXACT [OBOL:automatic]
synonym: "bronchial trunk non-striated muscle" EXACT [OBOL:automatic]
synonym: "bronchial trunk smooth muscle" EXACT [OBOL:automatic]
synonym: "bronchial trunk smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "bronchus involuntary muscle" EXACT [OBOL:automatic]
synonym: "bronchus non-striated muscle" EXACT [OBOL:automatic]
synonym: "bronchus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bronchi" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bronchial trunk" EXACT [OBOL:automatic]
synonym: "involuntary muscle of bronchus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bronchi" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bronchial trunk" EXACT [OBOL:automatic]
synonym: "non-striated muscle of bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle of bronchi" EXACT [OBOL:automatic]
synonym: "smooth muscle of bronchial trunk" EXACT [OBOL:automatic]
synonym: "smooth muscle of bronchus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bronchi" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of bronchus" EXACT [OBOL:automatic]
xref: MA:0001840
xref: ncithesaurus:Bronchus_Smooth_Muscle_Tissue
is_a: UBERON:0004233 ! implied link automatically realized ! lower respiratory tract smooth muscle
relationship: part_of UBERON:0002185
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0004243
name: prostate gland smooth muscle
def: "A portion of smooth muscle tissue that is part of a prostate gland [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of prostate" EXACT [OBOL:automatic]
synonym: "involuntary muscle of prostate gland" EXACT [OBOL:automatic]
synonym: "non-striated muscle of prostate" EXACT [OBOL:automatic]
synonym: "non-striated muscle of prostate gland" EXACT [OBOL:automatic]
synonym: "prostate gland involuntary muscle" EXACT [OBOL:automatic]
synonym: "prostate gland non-striated muscle" EXACT [OBOL:automatic]
synonym: "prostate gland smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "prostate involuntary muscle" EXACT [OBOL:automatic]
synonym: "prostate non-striated muscle" EXACT [OBOL:automatic]
synonym: "prostate smooth muscle" EXACT [OBOL:automatic]
synonym: "prostate smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of prostate" EXACT [OBOL:automatic]
synonym: "smooth muscle of prostate gland" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of prostate" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of prostate gland" EXACT [OBOL:automatic]
xref: BTO:0003159
xref: FMA:74245
xref: MA:0001741
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0002367
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0004245
name: oviduct smooth muscle
def: "A portion of smooth muscle tissue that is part of a fallopian tube [Obol]." [OBOL:automatic]
synonym: "fallopian tube involuntary muscle" EXACT [OBOL:automatic]
synonym: "fallopian tube non-striated muscle" EXACT [OBOL:automatic]
synonym: "fallopian tube smooth muscle" EXACT [OBOL:automatic]
synonym: "fallopian tube smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of fallopian tube" EXACT [OBOL:automatic]
synonym: "non-striated muscle of fallopian tube" EXACT [OBOL:automatic]
synonym: "smooth muscle of fallopian tube" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of fallopian tube" EXACT [OBOL:automatic]
xref: MA:0001721
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0003889
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0003889 ! fallopian tube
[Term]
id: UBERON:0004246
name: outflow tract smooth muscle
def: "A portion of smooth muscle tissue that is part of a outflow tract [Obol]." [OBOL:automatic]
synonym: "involuntary muscle of outflow tract" EXACT [OBOL:automatic]
synonym: "non-striated muscle of outflow tract" EXACT [OBOL:automatic]
synonym: "outflow tract involuntary muscle" EXACT [OBOL:automatic]
synonym: "outflow tract non-striated muscle" EXACT [OBOL:automatic]
synonym: "outflow tract smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "smooth muscle of outflow tract" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of outflow tract" EXACT [OBOL:automatic]
xref: MA:0000492
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
relationship: part_of UBERON:0004145
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0004145 ! outflow tract
[Term]
id: UBERON:0004247
name: back bone
def: "A bone that is part of a back [Obol]." [OBOL:automatic]
synonym: "back bone organ" EXACT [OBOL:automatic]
synonym: "bone of back" EXACT [OBOL:automatic]
synonym: "bone organ of back" EXACT [OBOL:automatic]
xref: MA:0000494
is_a: UBERON:0003463 ! implied link automatically realized ! trunk bone
is_a: UBERON:0005174 ! implied link automatically realized ! back organ
relationship: part_of UBERON:0001137
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001137 ! back
[Term]
id: UBERON:0004248
name: foot digit bone
def: "A bone that is part of a toe [Obol]." [OBOL:automatic]
synonym: "bone of digit of foot" EXACT [OBOL:automatic]
synonym: "bone of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "bone of digitus pedis" EXACT [OBOL:automatic]
synonym: "bone of foot digit" EXACT [OBOL:automatic]
synonym: "bone of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "bone of toe" EXACT [OBOL:automatic]
synonym: "bone organ of digit of foot" EXACT [OBOL:automatic]
synonym: "bone organ of digit of terminal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "bone organ of digitus pedis" EXACT [OBOL:automatic]
synonym: "bone organ of foot digit" EXACT [OBOL:automatic]
synonym: "bone organ of terminal segment of free lower limb digit" EXACT [OBOL:automatic]
synonym: "bone organ of toe" EXACT [OBOL:automatic]
synonym: "digit of foot bone" EXACT [OBOL:automatic]
synonym: "digit of foot bone organ" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb bone" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free lower limb bone organ" EXACT [OBOL:automatic]
synonym: "digitus pedis bone" EXACT [OBOL:automatic]
synonym: "digitus pedis bone organ" EXACT [OBOL:automatic]
synonym: "foot digit bone organ" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit bone" EXACT [OBOL:automatic]
synonym: "terminal segment of free lower limb digit bone organ" EXACT [OBOL:automatic]
synonym: "toe bone" EXACT [OBOL:automatic]
synonym: "toe bone organ" EXACT [OBOL:automatic]
xref: MA:0000646
is_a: UBERON:0005899 ! implied link automatically realized ! foot bone
relationship: part_of UBERON:0001466
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0004249
name: hand digit bone
def: "A bone that is part of a finger [Obol]." [OBOL:automatic]
synonym: "bone of digit of hand" EXACT [OBOL:automatic]
synonym: "bone of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of digitus manus" EXACT [OBOL:automatic]
synonym: "bone of finger" EXACT [OBOL:automatic]
synonym: "bone of hand digit" EXACT [OBOL:automatic]
synonym: "bone of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "bone organ of digit of hand" EXACT [OBOL:automatic]
synonym: "bone organ of digit of terminal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of digitus manus" EXACT [OBOL:automatic]
synonym: "bone organ of finger" EXACT [OBOL:automatic]
synonym: "bone organ of hand digit" EXACT [OBOL:automatic]
synonym: "bone organ of terminal segment of free upper limb digit" EXACT [OBOL:automatic]
synonym: "digit of hand bone" EXACT [OBOL:automatic]
synonym: "digit of hand bone organ" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "digit of terminal segment of free upper limb bone organ" EXACT [OBOL:automatic]
synonym: "digitus manus bone" EXACT [OBOL:automatic]
synonym: "digitus manus bone organ" EXACT [OBOL:automatic]
synonym: "finger bone" EXACT [OBOL:automatic]
synonym: "finger bone organ" EXACT [OBOL:automatic]
synonym: "hand digit bone organ" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit bone" EXACT [OBOL:automatic]
synonym: "terminal segment of free upper limb digit bone organ" EXACT [OBOL:automatic]
xref: MA:0000622
is_a: UBERON:0005897 ! implied link automatically realized ! hand bone
relationship: part_of UBERON:0002389
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0004250
name: upper arm bone
def: "A bone that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
synonym: "arm stylopod bone" EXACT [OBOL:automatic]
synonym: "arm stylopod bone organ" EXACT [OBOL:automatic]
synonym: "bone of arm stylopod" EXACT [OBOL:automatic]
synonym: "bone of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "bone of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "bone of stylopod of arm" EXACT [OBOL:automatic]
synonym: "bone of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "bone of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone of upper arm" EXACT [OBOL:automatic]
synonym: "bone organ of arm stylopod" EXACT [OBOL:automatic]
synonym: "bone organ of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "bone organ of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "bone organ of stylopod of arm" EXACT [OBOL:automatic]
synonym: "bone organ of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "bone organ of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "bone organ of upper arm" EXACT [OBOL:automatic]
synonym: "brachial region stylopod bone" EXACT [OBOL:automatic]
synonym: "brachial region stylopod bone organ" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb bone organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod bone" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod bone organ" EXACT [OBOL:automatic]
synonym: "stylopod of arm bone" EXACT [OBOL:automatic]
synonym: "stylopod of arm bone organ" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region bone" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region bone organ" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb bone" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb bone organ" EXACT [OBOL:automatic]
synonym: "upper arm bone organ" EXACT [OBOL:automatic]
xref: MA:0000604
is_a: UBERON:0002428 ! implied link automatically realized ! limb bone
relationship: part_of UBERON:0003822
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0004251
name: lower leg bone
def: "A bone that is part of a lower leg [Obol]." [OBOL:automatic]
synonym: "bone of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "bone of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "bone of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "bone of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "bone of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "bone of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "bone of lower leg" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "bone of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "bone of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "bone organ of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "bone organ of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "bone organ of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "bone organ of lower leg" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "bone organ of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "bone organ of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb middle limb segment bone" EXACT [OBOL:automatic]
synonym: "hind limb middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod bone" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment bone" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod bone" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment bone" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod bone" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb bone" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb bone organ" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment bone" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment bone organ" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod bone" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod bone organ" EXACT [OBOL:automatic]
synonym: "lower leg bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member bone organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity bone" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb bone" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb bone" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member bone" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of leg bone" EXACT [OBOL:automatic]
synonym: "zeugopod of leg bone organ" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity bone" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity bone organ" EXACT [OBOL:automatic]
xref: MA:0000676
is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone
relationship: part_of UBERON:0003823
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0004252
name: upper leg muscle
alt_id: UBERON:0000374
alt_id: UBERON:BTO_0001367-FMA_22470
def: "A muscle organ that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
synonym: "hind limb stylopod muscle organ" EXACT [OBOL:automatic]
synonym: "hindlimb stylopod muscle organ" EXACT [OBOL:automatic]
synonym: "inferior member stylopod muscle organ" EXACT [OBOL:automatic]
synonym: "lower extremity stylopod muscle organ" EXACT [OBOL:automatic]
synonym: "muscle of thigh" EXACT [FMA:22470]
synonym: "muscle organ of hind limb stylopod" EXACT [OBOL:automatic]
synonym: "muscle organ of hindlimb stylopod" EXACT [OBOL:automatic]
synonym: "muscle organ of inferior member stylopod" EXACT [OBOL:automatic]
synonym: "muscle organ of lower extremity stylopod" EXACT [OBOL:automatic]
synonym: "muscle organ of Proximal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "muscle organ of stylopod of hind limb" EXACT [OBOL:automatic]
synonym: "muscle organ of stylopod of hindlimb" EXACT [OBOL:automatic]
synonym: "muscle organ of stylopod of inferior member" EXACT [OBOL:automatic]
synonym: "muscle organ of stylopod of lower extremity" EXACT [OBOL:automatic]
synonym: "muscle organ of stylopod of lower limb" EXACT [OBOL:automatic]
synonym: "muscle organ of thigh" EXACT [OBOL:automatic]
synonym: "muscle organ of upper leg" EXACT [OBOL:automatic]
synonym: "Proximal segment of free lower limb muscle organ" EXACT [OBOL:automatic]
synonym: "stylopod of hind limb muscle organ" EXACT [OBOL:automatic]
synonym: "stylopod of hindlimb muscle organ" EXACT [OBOL:automatic]
synonym: "stylopod of inferior member muscle organ" EXACT [OBOL:automatic]
synonym: "stylopod of lower extremity muscle organ" EXACT [OBOL:automatic]
synonym: "stylopod of lower limb muscle organ" EXACT [OBOL:automatic]
synonym: "thigh muscle" EXACT [OBOL:automatic]
synonym: "thigh muscle organ" EXACT [OBOL:automatic]
synonym: "upper leg muscle organ" EXACT [OBOL:automatic]
xref: BTO:0001367
xref: FMA:22470
xref: MA:0000684
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0000376
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0004253
name: skin muscle
def: "A muscle organ that is part of a skin of body [Obol]." [OBOL:automatic]
synonym: "muscle organ of skin" EXACT [OBOL:automatic]
synonym: "skin muscle organ" EXACT [OBOL:automatic]
xref: MA:0002710
is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002097
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0004254
name: lower arm muscle
def: "A muscle organ that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "antebrachial region muscle organ" EXACT [OBOL:automatic]
synonym: "arm middle limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "arm zeugopod muscle organ" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod muscle organ" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb muscle organ" EXACT [OBOL:automatic]
synonym: "lower arm muscle organ" EXACT [OBOL:automatic]
synonym: "lower segment of arm muscle organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm muscle organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region muscle organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of antebrachial region" EXACT [OBOL:automatic]
synonym: "muscle organ of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of arm zeugopod" EXACT [OBOL:automatic]
synonym: "muscle organ of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "muscle organ of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "muscle organ of lower arm" EXACT [OBOL:automatic]
synonym: "muscle organ of lower segment of arm" EXACT [OBOL:automatic]
synonym: "muscle organ of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "muscle organ of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "muscle organ of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "muscle organ of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "muscle organ of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "muscle organ of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "muscle organ of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod muscle organ" EXACT [OBOL:automatic]
synonym: "zeugopod of arm muscle organ" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region muscle organ" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
xref: MA:0000600
is_a: UBERON:0003662 ! implied link automatically realized ! forelimb muscle
relationship: part_of UBERON:0002386
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0004255
name: upper arm muscle
def: "A muscle organ that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
synonym: "arm stylopod muscle organ" EXACT [OBOL:automatic]
synonym: "brachial region stylopod muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of arm stylopod" EXACT [OBOL:automatic]
synonym: "muscle organ of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "muscle organ of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "muscle organ of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "muscle organ of stylopod of arm" EXACT [OBOL:automatic]
synonym: "muscle organ of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "muscle organ of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "muscle organ of upper arm" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod muscle organ" EXACT [OBOL:automatic]
synonym: "stylopod of arm muscle organ" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region muscle organ" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb muscle organ" EXACT [OBOL:automatic]
synonym: "upper arm muscle organ" EXACT [OBOL:automatic]
xref: MA:0000606
is_a: UBERON:0003662 ! implied link automatically realized ! forelimb muscle
relationship: part_of UBERON:0003822
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0004256
name: lower leg muscle
def: "A muscle organ that is part of a lower leg [Obol]." [OBOL:automatic]
synonym: "hind limb middle limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod muscle organ" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod muscle organ" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod muscle organ" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb muscle organ" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment muscle organ" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod muscle organ" EXACT [OBOL:automatic]
synonym: "lower leg muscle organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb muscle organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb muscle organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member muscle organ" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity muscle organ" EXACT [OBOL:automatic]
synonym: "muscle organ of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "muscle organ of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "muscle organ of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "muscle organ of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "muscle organ of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "muscle organ of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "muscle organ of lower leg" EXACT [OBOL:automatic]
synonym: "muscle organ of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "muscle organ of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "muscle organ of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "muscle organ of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "muscle organ of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "muscle organ of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "muscle organ of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "muscle organ of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "muscle organ of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb muscle organ" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb muscle organ" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member muscle organ" EXACT [OBOL:automatic]
synonym: "zeugopod of leg muscle organ" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity muscle organ" EXACT [OBOL:automatic]
xref: MA:0000678
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0003823
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0004257
name: upper leg blood vessel
def: "A blood vessel that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
synonym: "blood vessel of hind limb stylopod" EXACT [OBOL:automatic]
synonym: "blood vessel of hindlimb stylopod" EXACT [OBOL:automatic]
synonym: "blood vessel of inferior member stylopod" EXACT [OBOL:automatic]
synonym: "blood vessel of lower extremity stylopod" EXACT [OBOL:automatic]
synonym: "blood vessel of Proximal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "blood vessel of stylopod of hind limb" EXACT [OBOL:automatic]
synonym: "blood vessel of stylopod of hindlimb" EXACT [OBOL:automatic]
synonym: "blood vessel of stylopod of inferior member" EXACT [OBOL:automatic]
synonym: "blood vessel of stylopod of lower extremity" EXACT [OBOL:automatic]
synonym: "blood vessel of stylopod of lower limb" EXACT [OBOL:automatic]
synonym: "blood vessel of thigh" EXACT [OBOL:automatic]
synonym: "blood vessel of upper leg" EXACT [OBOL:automatic]
synonym: "hind limb stylopod blood vessel" EXACT [OBOL:automatic]
synonym: "hindlimb stylopod blood vessel" EXACT [OBOL:automatic]
synonym: "inferior member stylopod blood vessel" EXACT [OBOL:automatic]
synonym: "lower extremity stylopod blood vessel" EXACT [OBOL:automatic]
synonym: "Proximal segment of free lower limb blood vessel" EXACT [OBOL:automatic]
synonym: "stylopod of hind limb blood vessel" EXACT [OBOL:automatic]
synonym: "stylopod of hindlimb blood vessel" EXACT [OBOL:automatic]
synonym: "stylopod of inferior member blood vessel" EXACT [OBOL:automatic]
synonym: "stylopod of lower extremity blood vessel" EXACT [OBOL:automatic]
synonym: "stylopod of lower limb blood vessel" EXACT [OBOL:automatic]
synonym: "thigh blood vessel" EXACT [OBOL:automatic]
xref: MA:0000681
is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel
relationship: part_of UBERON:0000376
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0004258
name: back blood vessel
def: "A blood vessel that is part of a back [Obol]." [OBOL:automatic]
synonym: "blood vessel of back" EXACT [OBOL:automatic]
xref: MA:0000493
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
relationship: part_of UBERON:0001137
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001137 ! back
[Term]
id: UBERON:0004259
name: lower arm blood vessel
def: "A blood vessel that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "antebrachial region blood vessel" EXACT [OBOL:automatic]
synonym: "arm middle limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "arm zeugopod blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of antebrachial region" EXACT [OBOL:automatic]
synonym: "blood vessel of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of arm zeugopod" EXACT [OBOL:automatic]
synonym: "blood vessel of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "blood vessel of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "blood vessel of lower arm" EXACT [OBOL:automatic]
synonym: "blood vessel of lower segment of arm" EXACT [OBOL:automatic]
synonym: "blood vessel of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "blood vessel of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "blood vessel of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "blood vessel of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "blood vessel of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "blood vessel of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "blood vessel of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod blood vessel" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb blood vessel" EXACT [OBOL:automatic]
synonym: "lower segment of arm blood vessel" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm blood vessel" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region blood vessel" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb blood vessel" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod blood vessel" EXACT [OBOL:automatic]
synonym: "zeugopod of arm blood vessel" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region blood vessel" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb blood vessel" EXACT [OBOL:automatic]
xref: MA:0000597
is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel
relationship: part_of UBERON:0002386
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0004260
name: upper arm blood vessel
def: "A blood vessel that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
synonym: "arm stylopod blood vessel" EXACT [OBOL:automatic]
synonym: "blood vessel of arm stylopod" EXACT [OBOL:automatic]
synonym: "blood vessel of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "blood vessel of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "blood vessel of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "blood vessel of stylopod of arm" EXACT [OBOL:automatic]
synonym: "blood vessel of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "blood vessel of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "blood vessel of upper arm" EXACT [OBOL:automatic]
synonym: "brachial region stylopod blood vessel" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb blood vessel" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod blood vessel" EXACT [OBOL:automatic]
synonym: "stylopod of arm blood vessel" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region blood vessel" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb blood vessel" EXACT [OBOL:automatic]
xref: MA:0000603
is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel
relationship: part_of UBERON:0003822
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0004261
name: lower leg blood vessel
def: "A blood vessel that is part of a lower leg [Obol]." [OBOL:automatic]
synonym: "blood vessel of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "blood vessel of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "blood vessel of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "blood vessel of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "blood vessel of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "blood vessel of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "blood vessel of lower leg" EXACT [OBOL:automatic]
synonym: "blood vessel of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "blood vessel of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "blood vessel of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "blood vessel of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "blood vessel of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "blood vessel of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "blood vessel of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "blood vessel of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "blood vessel of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb middle limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod blood vessel" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod blood vessel" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod blood vessel" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb blood vessel" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment blood vessel" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod blood vessel" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb blood vessel" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb blood vessel" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member blood vessel" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity blood vessel" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb blood vessel" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb blood vessel" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member blood vessel" EXACT [OBOL:automatic]
synonym: "zeugopod of leg blood vessel" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity blood vessel" EXACT [OBOL:automatic]
xref: MA:0000675
is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel
relationship: part_of UBERON:0003823
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0004262
name: upper leg skin
def: "A zone of skin that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
synonym: "hind limb stylopod skin" EXACT [OBOL:automatic]
synonym: "hindlimb stylopod skin" EXACT [OBOL:automatic]
synonym: "inferior member stylopod skin" EXACT [OBOL:automatic]
synonym: "lower extremity stylopod skin" EXACT [OBOL:automatic]
synonym: "Proximal segment of free lower limb skin" EXACT [OBOL:automatic]
synonym: "skin of hind limb stylopod" EXACT [OBOL:automatic]
synonym: "skin of hindlimb stylopod" EXACT [OBOL:automatic]
synonym: "skin of inferior member stylopod" EXACT [OBOL:automatic]
synonym: "skin of lower extremity stylopod" EXACT [OBOL:automatic]
synonym: "skin of Proximal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "skin of stylopod of hind limb" EXACT [OBOL:automatic]
synonym: "skin of stylopod of hindlimb" EXACT [OBOL:automatic]
synonym: "skin of stylopod of inferior member" EXACT [OBOL:automatic]
synonym: "skin of stylopod of lower extremity" EXACT [OBOL:automatic]
synonym: "skin of stylopod of lower limb" EXACT [OBOL:automatic]
synonym: "skin of thigh" EXACT [OBOL:automatic]
synonym: "skin of upper leg" EXACT [OBOL:automatic]
synonym: "stylopod of hind limb skin" EXACT [OBOL:automatic]
synonym: "stylopod of hindlimb skin" EXACT [OBOL:automatic]
synonym: "stylopod of inferior member skin" EXACT [OBOL:automatic]
synonym: "stylopod of lower extremity skin" EXACT [OBOL:automatic]
synonym: "stylopod of lower limb skin" EXACT [OBOL:automatic]
synonym: "thigh skin" EXACT [OBOL:automatic]
xref: FMA:37790
xref: MA:0000686
is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin
relationship: part_of UBERON:0000376
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0004263
name: upper arm skin
def: "A zone of skin that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
synonym: "arm stylopod skin" EXACT [OBOL:automatic]
synonym: "brachial region stylopod skin" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb skin" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod skin" EXACT [OBOL:automatic]
synonym: "skin of arm stylopod" EXACT [OBOL:automatic]
synonym: "skin of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "skin of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "skin of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "skin of stylopod of arm" EXACT [OBOL:automatic]
synonym: "skin of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "skin of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "skin of upper arm" EXACT [OBOL:automatic]
synonym: "stylopod of arm skin" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region skin" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb skin" EXACT [OBOL:automatic]
xref: MA:0000608
is_a: UBERON:0003531 ! implied link automatically realized ! forelimb skin
relationship: part_of UBERON:0003822
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0004264
name: lower leg skin
def: "A zone of skin that is part of a lower leg [Obol]." [OBOL:automatic]
synonym: "hind limb middle limb segment skin" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod skin" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment skin" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod skin" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment skin" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod skin" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb skin" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment skin" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod skin" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb skin" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb skin" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member skin" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity skin" EXACT [OBOL:automatic]
synonym: "skin of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "skin of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "skin of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "skin of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "skin of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "skin of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "skin of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "skin of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "skin of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "skin of lower leg" EXACT [OBOL:automatic]
synonym: "skin of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "skin of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "skin of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "skin of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "skin of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "skin of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "skin of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "skin of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "skin of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb skin" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb skin" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member skin" EXACT [OBOL:automatic]
synonym: "zeugopod of leg skin" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity skin" EXACT [OBOL:automatic]
xref: MA:0000680
is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin
relationship: part_of UBERON:0003823
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0004265
name: outflow tract myocardium
def: "A myocardium that is part of a outflow tract [Obol]." [OBOL:automatic]
synonym: "cardiac muscle of outflow tract" EXACT [OBOL:automatic]
synonym: "heart muscle of outflow tract" EXACT [OBOL:automatic]
synonym: "heart myocardium of outflow tract" EXACT [OBOL:automatic]
synonym: "muscle of heart of outflow tract" EXACT [OBOL:automatic]
synonym: "myocardium of outflow tract" EXACT [OBOL:automatic]
synonym: "outflow tract cardiac muscle" EXACT [OBOL:automatic]
synonym: "outflow tract heart muscle" EXACT [OBOL:automatic]
synonym: "outflow tract heart myocardium" EXACT [OBOL:automatic]
synonym: "outflow tract muscle of heart" EXACT [OBOL:automatic]
xref: EHDAA2:0001358
xref: HOG:0000603
xref: MA:0000489
is_a: UBERON:0002349 ! implied link automatically realized ! myocardium
relationship: part_of UBERON:0004145
intersection_of: UBERON:0002349 ! myocardium
intersection_of: part_of UBERON:0004145 ! outflow tract
[Term]
id: UBERON:0004266
name: upper leg connective tissue
def: "A portion of connective tissue that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
synonym: "connective tissue of hind limb stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of hindlimb stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of inferior member stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of lower extremity stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of Proximal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of hind limb" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of hindlimb" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of inferior member" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of lower extremity" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of lower limb" EXACT [OBOL:automatic]
synonym: "connective tissue of thigh" EXACT [OBOL:automatic]
synonym: "connective tissue of upper leg" EXACT [OBOL:automatic]
synonym: "hind limb stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "hindlimb stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "inferior member stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "lower extremity stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hind limb stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hindlimb stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of inferior member stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower extremity stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of Proximal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of hind limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of hindlimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of inferior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of lower extremity" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of lower limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of thigh" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of upper leg" EXACT [OBOL:automatic]
synonym: "Proximal segment of free lower limb connective tissue" EXACT [OBOL:automatic]
synonym: "Proximal segment of free lower limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "Proximal segment of free lower limb textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of hind limb connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of hind limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of hind limb textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of hindlimb connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of hindlimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of hindlimb textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of inferior member connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of inferior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of inferior member textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of lower extremity connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of lower extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of lower extremity textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of lower limb connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of lower limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of lower limb textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of hind limb stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of hindlimb stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of inferior member stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower extremity stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of Proximal segment of free lower limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of hind limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of hindlimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of inferior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of lower extremity" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of lower limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of thigh" EXACT [OBOL:automatic]
synonym: "textus connectivus of upper leg" EXACT [OBOL:automatic]
synonym: "thigh connective tissue" EXACT [OBOL:automatic]
synonym: "thigh portion of connective tissue" EXACT [OBOL:automatic]
synonym: "thigh textus connectivus" EXACT [OBOL:automatic]
synonym: "upper leg portion of connective tissue" EXACT [OBOL:automatic]
synonym: "upper leg textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000683
is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue
relationship: part_of UBERON:0000376
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0004267
name: back connective tissue
def: "A portion of connective tissue that is part of a back [Obol]." [OBOL:automatic]
synonym: "back portion of connective tissue" EXACT [OBOL:automatic]
synonym: "back textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of back" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of back" EXACT [OBOL:automatic]
synonym: "textus connectivus of back" EXACT [OBOL:automatic]
xref: MA:0000495
is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue
relationship: part_of UBERON:0001137
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001137 ! back
[Term]
id: UBERON:0004268
name: lower arm connective tissue
def: "A portion of connective tissue that is part of a lower arm [Obol]." [OBOL:automatic]
synonym: "antebrachial region connective tissue" EXACT [OBOL:automatic]
synonym: "antebrachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "antebrachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "arm middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "arm middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "arm middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "arm zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "arm zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "arm zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of antebrachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of arm zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of lower arm" EXACT [OBOL:automatic]
synonym: "connective tissue of lower segment of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "intermediate segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "lower arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower arm textus connectivus" EXACT [OBOL:automatic]
synonym: "lower segment of arm connective tissue" EXACT [OBOL:automatic]
synonym: "lower segment of arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower segment of arm textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of arm textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of brachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of antebrachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of arm zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower segment of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of antebrachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of arm middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of arm zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of brachial region middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of brachial region zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of intermediate segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower segment of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of brachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of proximal segment of free upper limb middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of proximal segment of free upper limb zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of brachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "zeugopod of arm connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of arm textus connectivus" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of brachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000599
is_a: UBERON:0003588 ! implied link automatically realized ! forelimb connective tissue
relationship: part_of UBERON:0002386
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0004269
name: upper arm connective tissue
def: "A portion of connective tissue that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
synonym: "arm stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "arm stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "arm stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "brachial region stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "brachial region stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "connective tissue of arm stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of arm" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "connective tissue of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "connective tissue of upper arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of arm stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of arm" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of upper arm" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "proximal segment of free upper limb stylopod textus connectivus" EXACT [OBOL:automatic]
synonym: "Proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of arm connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of arm textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of brachial region textus connectivus" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "stylopod of proximal segment of free upper limb textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of arm stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of brachial region stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of Proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of proximal segment of free upper limb stylopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of arm" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of brachial region" EXACT [OBOL:automatic]
synonym: "textus connectivus of stylopod of proximal segment of free upper limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of upper arm" EXACT [OBOL:automatic]
synonym: "upper arm portion of connective tissue" EXACT [OBOL:automatic]
synonym: "upper arm textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000605
is_a: UBERON:0003588 ! implied link automatically realized ! forelimb connective tissue
relationship: part_of UBERON:0003822
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0004270
name: lower leg connective tissue
def: "A portion of connective tissue that is part of a lower leg [Obol]." [OBOL:automatic]
synonym: "connective tissue of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "connective tissue of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "connective tissue of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "connective tissue of lower leg" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "connective tissue of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "connective tissue of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "hind limb middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hind limb zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "hindlimb zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "inferior member zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb connective tissue" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "intermediate segment of free lower limb textus connectivus" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity middle limb segment textus connectivus" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower extremity zeugopod textus connectivus" EXACT [OBOL:automatic]
synonym: "lower leg portion of connective tissue" EXACT [OBOL:automatic]
synonym: "lower leg textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of hind limb textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of hindlimb textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of inferior member textus connectivus" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "middle limb segment of lower extremity textus connectivus" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of lower leg" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "textus connectivus of hind limb middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of hind limb zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of hindlimb middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of hindlimb zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of inferior member middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of inferior member zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of intermediate segment of free lower limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower extremity middle limb segment" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower extremity zeugopod" EXACT [OBOL:automatic]
synonym: "textus connectivus of lower leg" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of hind limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of hindlimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of inferior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of middle limb segment of lower extremity" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of hind limb" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of hindlimb" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of inferior member" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of leg" EXACT [OBOL:automatic]
synonym: "textus connectivus of zeugopod of lower extremity" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of hind limb textus connectivus" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of hindlimb textus connectivus" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of inferior member textus connectivus" EXACT [OBOL:automatic]
synonym: "zeugopod of leg connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of leg portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of leg textus connectivus" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity portion of connective tissue" EXACT [OBOL:automatic]
synonym: "zeugopod of lower extremity textus connectivus" EXACT [OBOL:automatic]
xref: MA:0000677
is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue
relationship: part_of UBERON:0003823
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0004271
name: outflow tract pericardium
def: "A pericardium that is part of a outflow tract [Obol]." [OBOL:automatic]
synonym: "pericardium of outflow tract" EXACT [OBOL:automatic]
xref: MA:0000491
is_a: UBERON:0002407 ! implied link automatically realized ! pericardium
relationship: part_of UBERON:0004145
intersection_of: UBERON:0002407 ! pericardium
intersection_of: part_of UBERON:0004145 ! outflow tract
[Term]
id: UBERON:0004273
name: cartilaginous joint suture
def: "A cranial suture that is part of a cartilaginous joint [Obol]." [OBOL:automatic]
synonym: "articulatio cartilaginea cranial suture" EXACT [OBOL:automatic]
synonym: "articulatio cartilaginea cranial sutures" EXACT [OBOL:automatic]
synonym: "articulatio cartilaginea cranial sutures set" EXACT [OBOL:automatic]
synonym: "articulatio cartilaginea cranium suture" EXACT [OBOL:automatic]
synonym: "articulatio cartilaginea suture of cranium" EXACT [OBOL:automatic]
synonym: "cartilaginous joint cranial suture" EXACT [OBOL:automatic]
synonym: "cartilaginous joint cranial sutures" EXACT [OBOL:automatic]
synonym: "cartilaginous joint cranial sutures set" EXACT [OBOL:automatic]
synonym: "cartilaginous joint cranium suture" EXACT [OBOL:automatic]
synonym: "cartilaginous joint suture of cranium" EXACT [OBOL:automatic]
synonym: "cranial suture of articulatio cartilaginea" EXACT [OBOL:automatic]
synonym: "cranial suture of cartilaginous joint" EXACT [OBOL:automatic]
synonym: "cranial sutures of articulatio cartilaginea" EXACT [OBOL:automatic]
synonym: "cranial sutures of cartilaginous joint" EXACT [OBOL:automatic]
synonym: "cranial sutures set of articulatio cartilaginea" EXACT [OBOL:automatic]
synonym: "cranial sutures set of cartilaginous joint" EXACT [OBOL:automatic]
synonym: "cranium suture of articulatio cartilaginea" EXACT [OBOL:automatic]
synonym: "cranium suture of cartilaginous joint" EXACT [OBOL:automatic]
synonym: "suture of cranium of articulatio cartilaginea" EXACT [OBOL:automatic]
synonym: "suture of cranium of cartilaginous joint" EXACT [OBOL:automatic]
xref: MA:0001498
is_a: UBERON:0003685 ! implied link automatically realized ! cranial suture
relationship: part_of UBERON:0002213
intersection_of: UBERON:0003685 ! cranial suture
intersection_of: part_of UBERON:0002213 ! cartilaginous joint
[Term]
id: UBERON:0004274
name: lateral ventricle choroid plexus epithelium
def: "A choroid plexus epithelium that is part of a lateral ventricle [Obol]." [OBOL:automatic]
synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of lateral ventricle" EXACT [OBOL:automatic]
synonym: "chorioid plexus of cerebral hemisphere epithelium of lateral ventricle" EXACT [OBOL:automatic]
synonym: "choroid plexus epithelial tissue of lateral ventricle" EXACT [OBOL:automatic]
synonym: "choroid plexus epithelium of lateral ventricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of choroid plexus of lateral ventricle" EXACT [OBOL:automatic]
synonym: "epithelium of chorioid plexus of cerebral hemisphere of lateral ventricle" EXACT [OBOL:automatic]
synonym: "epithelium of choroid plexus of lateral ventricle" EXACT [OBOL:automatic]
synonym: "lateral ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic]
synonym: "lateral ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic]
synonym: "lateral ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic]
synonym: "lateral ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "lateral ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic]
synonym: "lateral ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "lateral ventricle epithelium of choroid plexus" EXACT [OBOL:automatic]
xref: FMA:242815
xref: MA:0000962
is_a: UBERON:0003911 ! implied link automatically realized ! choroid plexus epithelium
is_a: UBERON:0004643 ! implied link automatically realized ! lateral ventricle ependyma
relationship: part_of UBERON:0002285
intersection_of: UBERON:0003911 ! choroid plexus epithelium
intersection_of: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0004275
name: third ventricle choroid plexus epithelium
def: "A choroid plexus epithelium that is part of a third ventricle [Obol]." [OBOL:automatic]
synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of third ventricle" EXACT [OBOL:automatic]
synonym: "chorioid plexus of cerebral hemisphere epithelium of third ventricle" EXACT [OBOL:automatic]
synonym: "choroid plexus epithelial tissue of third ventricle" EXACT [OBOL:automatic]
synonym: "choroid plexus epithelium of third ventricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of choroid plexus of third ventricle" EXACT [OBOL:automatic]
synonym: "epithelium of chorioid plexus of cerebral hemisphere of third ventricle" EXACT [OBOL:automatic]
synonym: "epithelium of choroid plexus of third ventricle" EXACT [OBOL:automatic]
synonym: "third ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic]
synonym: "third ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic]
synonym: "third ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic]
synonym: "third ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "third ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic]
synonym: "third ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "third ventricle epithelium of choroid plexus" EXACT [OBOL:automatic]
xref: FMA:242821
xref: MA:0000880
is_a: UBERON:0003911 ! implied link automatically realized ! choroid plexus epithelium
is_a: UBERON:0004642 ! implied link automatically realized ! third ventricle ependyma
relationship: part_of UBERON:0002286
intersection_of: UBERON:0003911 ! choroid plexus epithelium
intersection_of: part_of UBERON:0002286 ! third ventricle
[Term]
id: UBERON:0004276
name: fourth ventricle choroid plexus epithelium
def: "A choroid plexus epithelium that is part of a fourth ventricle [Obol]." [OBOL:automatic]
synonym: "chorioid plexus of cerebral hemisphere epithelial tissue of fourth ventricle" EXACT [OBOL:automatic]
synonym: "chorioid plexus of cerebral hemisphere epithelium of fourth ventricle" EXACT [OBOL:automatic]
synonym: "choroid plexus epithelial tissue of fourth ventricle" EXACT [OBOL:automatic]
synonym: "choroid plexus epithelium of fourth ventricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic]
synonym: "epithelial tissue of choroid plexus of fourth ventricle" EXACT [OBOL:automatic]
synonym: "epithelium of chorioid plexus of cerebral hemisphere of fourth ventricle" EXACT [OBOL:automatic]
synonym: "epithelium of choroid plexus of fourth ventricle" EXACT [OBOL:automatic]
synonym: "fourth ventricle chorioid plexus of cerebral hemisphere epithelial tissue" EXACT [OBOL:automatic]
synonym: "fourth ventricle chorioid plexus of cerebral hemisphere epithelium" EXACT [OBOL:automatic]
synonym: "fourth ventricle choroid plexus epithelial tissue" EXACT [OBOL:automatic]
synonym: "fourth ventricle epithelial tissue of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "fourth ventricle epithelial tissue of choroid plexus" EXACT [OBOL:automatic]
synonym: "fourth ventricle epithelium of chorioid plexus of cerebral hemisphere" EXACT [OBOL:automatic]
synonym: "fourth ventricle epithelium of choroid plexus" EXACT [OBOL:automatic]
xref: FMA:242823
xref: MA:0000984
is_a: UBERON:0003911 ! implied link automatically realized ! choroid plexus epithelium
is_a: UBERON:0004644 ! implied link automatically realized ! fourth ventricle ependyma
relationship: part_of UBERON:0002422
intersection_of: UBERON:0003911 ! choroid plexus epithelium
intersection_of: part_of UBERON:0002422 ! fourth ventricle
[Term]
id: UBERON:0004277
name: eye muscle
def: "A muscle that is attached to or part of the eye." [OBOL:automatic]
xref: AAO:0000156
xref: MA:0000271
xref: OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycB4rvYA8cJwpEbGdrcN5Y29ycA
is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ
relationship: part_of UBERON:0000970
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0004288
name: skeleton
def: "all the bones in the body. With the articular system, this comprises the skeletal system." [Wikipedia:Skeleton]
comment: The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) GO:0001501
subset: uberon_slim
synonym: "set of all bones" EXACT []
synonym: "set of bones of body" EXACT []
xref: AEO:0000168
xref: EFO:0000806
xref: EHDAA:5047
xref: EHDAA:8005
xref: EHDAA:8041
xref: EHDAA2:0001843
xref: FMA:23875
xref: GAID:177
xref: galen:Skeleton
xref: MAT:0000032
xref: MIAA:0000032
xref: OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA
is_a: UBERON:0000480 ! anatomical group
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001434 ! skeletal system
[Term]
id: UBERON:0004289
name: radula
def: "an anatomical structure found in mollusks and used for feeding. It is a minutely toothed, chitinous ribbon. It is typically used for scraping or cutting food before the food enters the esophagus. The radula is unique to the molluscs, and is found in all classes of mollusks except for the bivalves." [Wikipedia:Radula]
comment: The first bona fide radula dates to the Early Cambrian,[3] although trace fossils from the earlier Ediacaran have been suggested to have been made by the radula of the organism Kimberella.[WP]
xref: BTO:0001506
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0004290
name: dermomyotome
def: "Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis. Within the dermomyotome there is also a medio-lateral difference. The central region makes dermis, the mesenchymal connective tissue of the back skin. The medial region (closest to neural tube) makes epaxial muscle, and the lateral region (furthest from neural tube) makes hypaxial muscle." [http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=eurekah&part=A66768, ZFA:0001513]
xref: HOG:0000676
xref: ncithesaurus:Dermomyotome
xref: ZFA:0001513
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0002329 ! somite
[Term]
id: UBERON:0004291
name: heart rudiment
def: "a cone-like structure that is formed when myocardial progenitor cells of the heart field fuse at the midline. The heart rudiment is the first structure of the heart tube." [GO:0003142]
synonym: "heart cone" EXACT []
xref: ZFA:0000115
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0004140 ! heart field
[Term]
id: UBERON:0004292
name: cardiac skeleton
def: "a specialized extracellular matrix that separates the atria from the ventricles and provides physical support for the heart[GO]. structure of dense connective tissue in the heart that separates the atria from the ventricles. It is not a true skeleton, but it does provide structure and support for the heart, as well as isolating the atria from the ventricles. This allows the AV node and AV bundle to delay the wave of depolarisation such that the atria can contract and assist in ventricular filling before the ventricles themselves depolarise and contract (the AV bundle is the only part of the conduction system that passes from the atria to the ventricles in a normal heart). It also allows the valves (bicuspid, tricuspid, semilunar) to keep open by giving them structural support." [Wikipedia:Cardiac_skeleton]
synonym: "cardiac fibrous skeleton" EXACT []
synonym: "fibrous skeleton of heart" EXACT []
synonym: "heart fibrous skeleton" EXACT []
xref: FMA:9496
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0004293
name: parasympathetic nerve
def: "A nerve that is part of a parasympathetic nervous system [Obol]." [OBOL:automatic]
synonym: "nerve of parasympathetic nervous system" EXACT [OBOL:automatic]
xref: EHDAA2:0001401
xref: HOG:0000641
xref: MA:0000224
is_a: UBERON:0003377 ! implied link automatically realized ! nerve of peripheral nervous system
relationship: part_of UBERON:0000011
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000011 ! parasympathetic nervous system
[Term]
id: UBERON:0004294
name: glomerular capillary endothelium
def: "An endothelium of capillary that is part of a renal glomerulus [Obol]." [OBOL:automatic]
synonym: "renal glomerulus capillary endothelium" EXACT [OBOL:automatic]
xref: MA:0001658
is_a: UBERON:0001915 ! implied link automatically realized ! endothelium of capillary
is_a: UBERON:0004189 ! implied link automatically realized ! glomerular endothelium
relationship: part_of UBERON:0000074
intersection_of: UBERON:0001915 ! endothelium of capillary
intersection_of: part_of UBERON:0000074 ! renal glomerulus
[Term]
id: UBERON:0004295
name: sympathetic nerve trunk
def: "A nerve trunk that is part of a sympathetic nervous system [Obol]." [OBOL:automatic]
synonym: "nerve trunk of sympathetic nervous system" EXACT [OBOL:automatic]
synonym: "nerve trunk of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic]
synonym: "sympathetic nervous system nerve trunk" EXACT [OBOL:automatic]
xref: EHDAA2:0001970
xref: MA:0000227
is_a: UBERON:0002464 ! implied link automatically realized ! nerve trunk
relationship: part_of UBERON:0000013
intersection_of: UBERON:0002464 ! nerve trunk
intersection_of: part_of UBERON:0000013 ! sympathetic nervous system
[Term]
id: UBERON:0004296
name: respiratory system lymphatic vessel smooth muscle
def: "A lymphatic vessel smooth muscle that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "smooth muscle of lymph vessel of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001826
is_a: UBERON:0004225 ! implied link automatically realized ! respiratory system smooth muscle
is_a: UBERON:0004232 ! implied link automatically realized ! lymphatic vessel smooth muscle
relationship: part_of UBERON:0001004
intersection_of: UBERON:0004232 ! lymphatic vessel smooth muscle
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004297
name: respiratory system blood vessel smooth muscle
def: "A blood vessel smooth muscle that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "smooth muscle tissue of blood vessel of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001806
is_a: UBERON:0004225 ! implied link automatically realized ! respiratory system smooth muscle
is_a: UBERON:0004237 ! implied link automatically realized ! blood vessel smooth muscle
relationship: part_of UBERON:0001004
intersection_of: UBERON:0004237 ! blood vessel smooth muscle
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004300
name: distal phalanx
def: "Terminal phalanx located at the tip of the digits." [Wikipedia:Distal_phalanges]
synonym: "terminal phalanx" EXACT []
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/ab/Scheme_human_hand_bones-en.svg/200px-Scheme_human_hand_bones-en.svg.png
xref: MA:0002914
is_a: UBERON:0003221 ! phalanx
[Term]
id: UBERON:0004301
name: middle phalanx
def: "A phalanx located between proximal and distal phalanges[CJM]. Intermediate phalanges are bones found in the limbs of most vertebrates. In humans, they are the bones of the finger and toe which lie in the middle, between the two wrinkly joints. The thumb and big toe do not have intermediate phalanges. In most other vertebrates, they have a corresponding place in their limbs, whether they be paw, wing, hoof or fin[WP]." [Wikipedia:Intermediate_phalanges]
synonym: "intermediate phalanx" EXACT []
xref: MA:0002915
is_a: UBERON:0003221 ! phalanx
relationship: distal_to UBERON:0004302 ! proximal phalanx
relationship: proximal_to UBERON:0004300 ! distal phalanx
[Term]
id: UBERON:0004302
name: proximal phalanx
def: "Proximal-most phalanx within a digit[CJM]. Proximal phalanges are bones found in the limbs of most vertebrates. In humans, they are the bones at the base of a toe or finger, the prominent, knobby ends of which are often called the knuckles. In other vertebrates, proximal phalanges have a similar placement in the corresponding limbs, be they paw, wing or fin. In many species, they are the longest and thickest phalanx ('finger' bone)." [Wikipedia:Proximal_phalanges]
xref: MA:0002916
is_a: UBERON:0003221 ! phalanx
[Term]
id: UBERON:0004311
name: distal phalanx of hand digit 2
def: "A distal phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd digit of hand distal phalanx" EXACT [OBOL:automatic]
synonym: "2nd finger distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 2nd digit of hand" EXACT [OBOL:automatic]
synonym: "distal phalanx of 2nd finger" EXACT [OBOL:automatic]
synonym: "distal phalanx of second finger" EXACT [OBOL:automatic]
synonym: "hand digit 2 distal phalanx" EXACT [OBOL:automatic]
synonym: "second finger distal phalanx" EXACT [OBOL:automatic]
xref: FMA:23946
is_a: UBERON:0003636 ! implied link automatically realized ! hand digit 2 phalanx
is_a: UBERON:0003865 ! implied link automatically realized ! distal phalanx of finger
relationship: part_of UBERON:0003622
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003622 ! hand digit 2
[Term]
id: UBERON:0004312
name: distal phalanx of hand digit 3
def: "A distal phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd digit of hand distal phalanx" EXACT [OBOL:automatic]
synonym: "3rd finger distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 3rd digit of hand" EXACT [OBOL:automatic]
synonym: "distal phalanx of 3rd finger" EXACT [OBOL:automatic]
synonym: "distal phalanx of third finger" EXACT [OBOL:automatic]
synonym: "hand digit 3 distal phalanx" EXACT [OBOL:automatic]
synonym: "third finger distal phalanx" EXACT [OBOL:automatic]
xref: FMA:23947
is_a: UBERON:0003637 ! implied link automatically realized ! hand digit 3 phalanx
is_a: UBERON:0003865 ! implied link automatically realized ! distal phalanx of finger
relationship: part_of UBERON:0003623
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003623 ! hand digit 3
[Term]
id: UBERON:0004313
name: distal phalanx of hand digit 4
def: "A distal phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic]
synonym: "4th digit of hand distal phalanx" EXACT [OBOL:automatic]
synonym: "4th finger distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 4th digit of hand" EXACT [OBOL:automatic]
synonym: "distal phalanx of 4th finger" EXACT [OBOL:automatic]
synonym: "distal phalanx of fourth finger" EXACT [OBOL:automatic]
synonym: "fourth finger distal phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 4 distal phalanx" EXACT [OBOL:automatic]
xref: FMA:23948
is_a: UBERON:0003638 ! implied link automatically realized ! hand digit 4 phalanx
is_a: UBERON:0003865 ! implied link automatically realized ! distal phalanx of finger
relationship: part_of UBERON:0003624
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003624 ! hand digit 4
[Term]
id: UBERON:0004314
name: distal phalanx of hand digit 5
def: "A distal phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic]
synonym: "5th digit of hand distal phalanx" EXACT [OBOL:automatic]
synonym: "5th finger distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 5th digit of hand" EXACT [OBOL:automatic]
synonym: "distal phalanx of 5th finger" EXACT [OBOL:automatic]
synonym: "distal phalanx of fifth finger" EXACT [OBOL:automatic]
synonym: "fifth finger distal phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 5 distal phalanx" EXACT [OBOL:automatic]
xref: FMA:23949
is_a: UBERON:0003639 ! implied link automatically realized ! hand digit 5 phalanx
is_a: UBERON:0003865 ! implied link automatically realized ! distal phalanx of finger
relationship: part_of UBERON:0003625
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003625 ! hand digit 5
[Term]
id: UBERON:0004315
name: distal phalanx of foot digit 1
def: "A distal phalanx that is part of a foot digit 1 [Obol]." [OBOL:automatic]
synonym: "distal phalanx of foot digit 1" EXACT [OBOL:automatic]
synonym: "distal phalanx of hallux" EXACT [OBOL:automatic]
synonym: "foot digit 1 distal phalanx" EXACT [OBOL:automatic]
synonym: "hallux distal phalanx" EXACT [OBOL:automatic]
xref: FMA:32627
is_a: UBERON:0003640 ! implied link automatically realized ! foot digit 1 phalanx
is_a: UBERON:0003867 ! implied link automatically realized ! distal phalanx of toe
relationship: part_of UBERON:0003631
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003631 ! foot digit 1
[Term]
id: UBERON:0004316
name: distal phalanx of foot digit 2
def: "A distal phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd toe distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 2nd toe" EXACT [OBOL:automatic]
synonym: "distal phalanx of foot digit 2" EXACT [OBOL:automatic]
synonym: "foot digit 2 distal phalanx" EXACT [OBOL:automatic]
xref: FMA:32628
is_a: UBERON:0003641 ! implied link automatically realized ! foot digit 2 phalanx
is_a: UBERON:0003867 ! implied link automatically realized ! distal phalanx of toe
relationship: part_of UBERON:0003632
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003632 ! foot digit 2
[Term]
id: UBERON:0004317
name: distal phalanx of foot digit 3
def: "A distal phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd toe distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 3rd toe" EXACT [OBOL:automatic]
synonym: "distal phalanx of foot digit 3" EXACT [OBOL:automatic]
synonym: "foot digit 3 distal phalanx" EXACT [OBOL:automatic]
xref: FMA:32629
is_a: UBERON:0003642 ! implied link automatically realized ! foot digit 3 phalanx
is_a: UBERON:0003867 ! implied link automatically realized ! distal phalanx of toe
relationship: part_of UBERON:0003633
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003633 ! foot digit 3
[Term]
id: UBERON:0004318
name: distal phalanx of foot digit 4
def: "A distal phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic]
synonym: "4th toe distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 4th toe" EXACT [OBOL:automatic]
synonym: "distal phalanx of foot digit 4" EXACT [OBOL:automatic]
synonym: "foot digit 4 distal phalanx" EXACT [OBOL:automatic]
xref: FMA:32630
is_a: UBERON:0003862 ! implied link automatically realized ! foot digit 4 phalanx
is_a: UBERON:0003867 ! implied link automatically realized ! distal phalanx of toe
relationship: part_of UBERON:0003634
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003634 ! foot digit 4
[Term]
id: UBERON:0004319
name: distal phalanx of foot digit 5
def: "A distal phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic]
synonym: "5th toe distal phalanx" EXACT [OBOL:automatic]
synonym: "distal phalanx of 5th toe" EXACT [OBOL:automatic]
synonym: "distal phalanx of foot digit 5" EXACT [OBOL:automatic]
synonym: "foot digit 5 distal phalanx" EXACT [OBOL:automatic]
xref: FMA:32631
is_a: UBERON:0003863 ! implied link automatically realized ! foot digit 5 phalanx
is_a: UBERON:0003867 ! implied link automatically realized ! distal phalanx of toe
relationship: part_of UBERON:0003635
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0003635 ! foot digit 5
[Term]
id: UBERON:0004320
name: middle phalanx of hand digit 2
def: "A middle phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd digit of hand intermediate phalanx" EXACT [OBOL:automatic]
synonym: "2nd digit of hand middle phalanx" EXACT [OBOL:automatic]
synonym: "2nd finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "2nd finger middle phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 2 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 2 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 2nd digit of hand" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 2nd finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of hand digit 2" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of second finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of 2nd digit of hand" EXACT [OBOL:automatic]
synonym: "middle phalanx of 2nd finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of second finger" EXACT [OBOL:automatic]
synonym: "second finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "second finger middle phalanx" EXACT [OBOL:automatic]
xref: FMA:23933
is_a: UBERON:0003636 ! implied link automatically realized ! hand digit 2 phalanx
is_a: UBERON:0003864 ! implied link automatically realized ! middle phalanx of finger
relationship: part_of UBERON:0003622
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003622 ! hand digit 2
[Term]
id: UBERON:0004321
name: middle phalanx of hand digit 3
def: "A middle phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd digit of hand intermediate phalanx" EXACT [OBOL:automatic]
synonym: "3rd digit of hand middle phalanx" EXACT [OBOL:automatic]
synonym: "3rd finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "3rd finger middle phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 3 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 3 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 3rd digit of hand" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 3rd finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of hand digit 3" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of third finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of 3rd digit of hand" EXACT [OBOL:automatic]
synonym: "middle phalanx of 3rd finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of middle finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of third finger" EXACT [OBOL:automatic]
synonym: "third finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "third finger middle phalanx" EXACT [OBOL:automatic]
xref: FMA:23934
is_a: UBERON:0003637 ! implied link automatically realized ! hand digit 3 phalanx
is_a: UBERON:0003864 ! implied link automatically realized ! middle phalanx of finger
relationship: part_of UBERON:0003623
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003623 ! hand digit 3
[Term]
id: UBERON:0004322
name: middle phalanx of hand digit 4
def: "A middle phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic]
synonym: "4th digit of hand intermediate phalanx" EXACT [OBOL:automatic]
synonym: "4th digit of hand middle phalanx" EXACT [OBOL:automatic]
synonym: "4th finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "4th finger middle phalanx" EXACT [OBOL:automatic]
synonym: "fourth finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "fourth finger middle phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 4 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 4 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 4th digit of hand" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 4th finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of fourth finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of hand digit 4" EXACT [OBOL:automatic]
synonym: "middle phalanx of 4th digit of hand" EXACT [OBOL:automatic]
synonym: "middle phalanx of 4th finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of fourth finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of ring finger" EXACT [OBOL:automatic]
xref: FMA:23935
is_a: UBERON:0003638 ! implied link automatically realized ! hand digit 4 phalanx
is_a: UBERON:0003864 ! implied link automatically realized ! middle phalanx of finger
relationship: part_of UBERON:0003624
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003624 ! hand digit 4
[Term]
id: UBERON:0004323
name: middle phalanx of hand digit 5
def: "A middle phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic]
synonym: "5th digit of hand intermediate phalanx" EXACT [OBOL:automatic]
synonym: "5th digit of hand middle phalanx" EXACT [OBOL:automatic]
synonym: "5th finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "5th finger middle phalanx" EXACT [OBOL:automatic]
synonym: "fifth finger intermediate phalanx" EXACT [OBOL:automatic]
synonym: "fifth finger middle phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 5 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 5 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 5th digit of hand" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 5th finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of fifth finger" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of hand digit 5" EXACT [OBOL:automatic]
synonym: "middle phalanx of 5th digit of hand" EXACT [OBOL:automatic]
synonym: "middle phalanx of 5th finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of fifth finger" EXACT [OBOL:automatic]
synonym: "middle phalanx of little finger" EXACT [OBOL:automatic]
xref: FMA:23936
is_a: UBERON:0003639 ! implied link automatically realized ! hand digit 5 phalanx
is_a: UBERON:0003864 ! implied link automatically realized ! middle phalanx of finger
relationship: part_of UBERON:0003625
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003625 ! hand digit 5
[Term]
id: UBERON:0004324
name: middle phalanx of foot digit 2
def: "A middle phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd toe intermediate phalanx" EXACT [OBOL:automatic]
synonym: "2nd toe middle phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 2 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 2 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 2nd toe" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of foot digit 2" EXACT [OBOL:automatic]
synonym: "middle phalanx of 2nd toe" EXACT [OBOL:automatic]
synonym: "middle phalanx of foot digit 2" EXACT [OBOL:automatic]
xref: FMA:32623
is_a: UBERON:0003641 ! implied link automatically realized ! foot digit 2 phalanx
is_a: UBERON:0003866 ! implied link automatically realized ! middle phalanx of toe
relationship: part_of UBERON:0003632
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003632 ! foot digit 2
[Term]
id: UBERON:0004325
name: middle phalanx of foot digit 3
def: "A middle phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd toe intermediate phalanx" EXACT [OBOL:automatic]
synonym: "3rd toe middle phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 3 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 3 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 3rd toe" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of foot digit 3" EXACT [OBOL:automatic]
synonym: "middle phalanx of 3rd toe" EXACT [OBOL:automatic]
synonym: "middle phalanx of foot digit 3" EXACT [OBOL:automatic]
xref: FMA:32624
is_a: UBERON:0003642 ! implied link automatically realized ! foot digit 3 phalanx
is_a: UBERON:0003866 ! implied link automatically realized ! middle phalanx of toe
relationship: part_of UBERON:0003633
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003633 ! foot digit 3
[Term]
id: UBERON:0004326
name: middle phalanx of foot digit 4
def: "A middle phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic]
synonym: "4th toe intermediate phalanx" EXACT [OBOL:automatic]
synonym: "4th toe middle phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 4 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 4 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 4th toe" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of foot digit 4" EXACT [OBOL:automatic]
synonym: "middle phalanx of 4th toe" EXACT [OBOL:automatic]
synonym: "middle phalanx of foot digit 4" EXACT [OBOL:automatic]
synonym: "middle phalanx of fourth toe" EXACT [OBOL:automatic]
xref: FMA:32625
is_a: UBERON:0003862 ! implied link automatically realized ! foot digit 4 phalanx
is_a: UBERON:0003866 ! implied link automatically realized ! middle phalanx of toe
relationship: part_of UBERON:0003634
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003634 ! foot digit 4
[Term]
id: UBERON:0004327
name: middle phalanx of foot digit 5
def: "A middle phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic]
synonym: "5th toe intermediate phalanx" EXACT [OBOL:automatic]
synonym: "5th toe middle phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 5 intermediate phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 5 middle phalanx" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of 5th toe" EXACT [OBOL:automatic]
synonym: "intermediate phalanx of foot digit 5" EXACT [OBOL:automatic]
synonym: "middle phalanx of 5th toe" EXACT [OBOL:automatic]
synonym: "middle phalanx of foot digit 5" EXACT [OBOL:automatic]
synonym: "middle phalanx of little toe" EXACT [OBOL:automatic]
xref: FMA:230984
is_a: UBERON:0003863 ! implied link automatically realized ! foot digit 5 phalanx
is_a: UBERON:0003866 ! implied link automatically realized ! middle phalanx of toe
relationship: part_of UBERON:0003635
intersection_of: UBERON:0004301 ! middle phalanx
intersection_of: part_of UBERON:0003635 ! foot digit 5
[Term]
id: UBERON:0004328
name: proximal phalanx of hand digit 2
def: "A proximal phalanx that is part of a hand digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd digit of hand proximal phalanx" EXACT [OBOL:automatic]
synonym: "2nd finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 2 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 2nd digit of hand" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 2nd finger" EXACT [OBOL:automatic]
synonym: "proximal phalanx of second finger" EXACT [OBOL:automatic]
synonym: "second finger proximal phalanx" EXACT [OBOL:automatic]
xref: FMA:23919
is_a: UBERON:0002234 ! implied link automatically realized ! proximal phalanx of finger
is_a: UBERON:0003636 ! implied link automatically realized ! hand digit 2 phalanx
relationship: part_of UBERON:0003622
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003622 ! hand digit 2
[Term]
id: UBERON:0004329
name: proximal phalanx of hand digit 3
def: "A proximal phalanx that is part of a hand digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd digit of hand proximal phalanx" EXACT [OBOL:automatic]
synonym: "3rd finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 3 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 3rd digit of hand" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 3rd finger" EXACT [OBOL:automatic]
synonym: "proximal phalanx of third finger" EXACT [OBOL:automatic]
synonym: "third finger proximal phalanx" EXACT [OBOL:automatic]
xref: FMA:23920
is_a: UBERON:0002234 ! implied link automatically realized ! proximal phalanx of finger
is_a: UBERON:0003637 ! implied link automatically realized ! hand digit 3 phalanx
relationship: part_of UBERON:0003623
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003623 ! hand digit 3
[Term]
id: UBERON:0004330
name: proximal phalanx of hand digit 4
def: "A proximal phalanx that is part of a hand digit 4 [Obol]." [OBOL:automatic]
synonym: "4th digit of hand proximal phalanx" EXACT [OBOL:automatic]
synonym: "4th finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "fourth finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 4 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 4th digit of hand" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 4th finger" EXACT [OBOL:automatic]
synonym: "proximal phalanx of fourth finger" EXACT [OBOL:automatic]
xref: FMA:23921
is_a: UBERON:0002234 ! implied link automatically realized ! proximal phalanx of finger
is_a: UBERON:0003638 ! implied link automatically realized ! hand digit 4 phalanx
relationship: part_of UBERON:0003624
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003624 ! hand digit 4
[Term]
id: UBERON:0004331
name: proximal phalanx of hand digit 5
def: "A proximal phalanx that is part of a hand digit 5 [Obol]." [OBOL:automatic]
synonym: "5th digit of hand proximal phalanx" EXACT [OBOL:automatic]
synonym: "5th finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "fifth finger proximal phalanx" EXACT [OBOL:automatic]
synonym: "hand digit 5 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 5th digit of hand" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 5th finger" EXACT [OBOL:automatic]
synonym: "proximal phalanx of fifth finger" EXACT [OBOL:automatic]
xref: FMA:23922
is_a: UBERON:0002234 ! implied link automatically realized ! proximal phalanx of finger
is_a: UBERON:0003639 ! implied link automatically realized ! hand digit 5 phalanx
relationship: part_of UBERON:0003625
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003625 ! hand digit 5
[Term]
id: UBERON:0004332
name: proximal phalanx of foot digit 1
def: "A proximal phalanx that is part of a foot digit 1 [Obol]." [OBOL:automatic]
synonym: "foot digit 1 proximal phalanx" EXACT [OBOL:automatic]
synonym: "hallux proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of foot digit 1" EXACT [OBOL:automatic]
synonym: "proximal phalanx of hallux" EXACT [OBOL:automatic]
xref: FMA:43252
is_a: UBERON:0003640 ! implied link automatically realized ! foot digit 1 phalanx
is_a: UBERON:0003868 ! implied link automatically realized ! proximal phalanx of toe
relationship: part_of UBERON:0003631
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003631 ! foot digit 1
[Term]
id: UBERON:0004333
name: proximal phalanx of foot digit 2
def: "A proximal phalanx that is part of a foot digit 2 [Obol]." [OBOL:automatic]
synonym: "2nd toe proximal phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 2 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 2nd toe" EXACT [OBOL:automatic]
synonym: "proximal phalanx of foot digit 2" EXACT [OBOL:automatic]
xref: FMA:32618
is_a: UBERON:0003641 ! implied link automatically realized ! foot digit 2 phalanx
is_a: UBERON:0003868 ! implied link automatically realized ! proximal phalanx of toe
relationship: part_of UBERON:0003632
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003632 ! foot digit 2
[Term]
id: UBERON:0004334
name: proximal phalanx of foot digit 3
def: "A proximal phalanx that is part of a foot digit 3 [Obol]." [OBOL:automatic]
synonym: "3rd toe proximal phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 3 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 3rd toe" EXACT [OBOL:automatic]
synonym: "proximal phalanx of foot digit 3" EXACT [OBOL:automatic]
xref: FMA:32619
is_a: UBERON:0003642 ! implied link automatically realized ! foot digit 3 phalanx
is_a: UBERON:0003868 ! implied link automatically realized ! proximal phalanx of toe
relationship: part_of UBERON:0003633
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003633 ! foot digit 3
[Term]
id: UBERON:0004335
name: proximal phalanx of foot digit 4
def: "A proximal phalanx that is part of a foot digit 4 [Obol]." [OBOL:automatic]
synonym: "4th toe proximal phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 4 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 4th toe" EXACT [OBOL:automatic]
synonym: "proximal phalanx of foot digit 4" EXACT [OBOL:automatic]
xref: FMA:32620
is_a: UBERON:0003862 ! implied link automatically realized ! foot digit 4 phalanx
is_a: UBERON:0003868 ! implied link automatically realized ! proximal phalanx of toe
relationship: part_of UBERON:0003634
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003634 ! foot digit 4
[Term]
id: UBERON:0004336
name: proximal phalanx of foot digit 5
def: "A proximal phalanx that is part of a foot digit 5 [Obol]." [OBOL:automatic]
synonym: "5th toe proximal phalanx" EXACT [OBOL:automatic]
synonym: "foot digit 5 proximal phalanx" EXACT [OBOL:automatic]
synonym: "proximal phalanx of 5th toe" EXACT [OBOL:automatic]
synonym: "proximal phalanx of foot digit 5" EXACT [OBOL:automatic]
synonym: "proximal phalanx of little toe" EXACT [OBOL:automatic]
xref: FMA:32621
is_a: UBERON:0003863 ! implied link automatically realized ! foot digit 5 phalanx
is_a: UBERON:0003868 ! implied link automatically realized ! proximal phalanx of toe
relationship: part_of UBERON:0003635
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0003635 ! foot digit 5
[Term]
id: UBERON:0004337
name: distal phalanx of hand digit 1
def: "A distal phalanx that is part of a hand digit 1 [Obol]." [OBOL:automatic]
synonym: "distal phalanx of thumb" EXACT [OBOL:automatic]
synonym: "thumb distal phalanx" EXACT [OBOL:automatic]
xref: FMA:23945
is_a: UBERON:0003620 ! implied link automatically realized ! hand digit 1 phalanx
is_a: UBERON:0003865 ! implied link automatically realized ! distal phalanx of finger
relationship: part_of UBERON:0001463
intersection_of: UBERON:0004300 ! distal phalanx
intersection_of: part_of UBERON:0001463 ! hand digit 1
[Term]
id: UBERON:0004338
name: proximal phalanx of hand digit 1
def: "A proximal phalanx that is part of a hand digit 1 [Obol]." [OBOL:automatic]
synonym: "proximal phalanx of thumb" EXACT [OBOL:automatic]
synonym: "thumb proximal" EXACT [OBOL:automatic]
xref: FMA:23918
is_a: UBERON:0002234 ! implied link automatically realized ! proximal phalanx of finger
is_a: UBERON:0003620 ! implied link automatically realized ! hand digit 1 phalanx
relationship: part_of UBERON:0001463
intersection_of: UBERON:0004302 ! proximal phalanx
intersection_of: part_of UBERON:0001463 ! hand digit 1
[Term]
id: UBERON:0004339
name: calvaria
def: "the upper domelike portion of the skull[MP]. the upper part of the cranium and surrounds the cranial cavity containing the brain. It is formed from frontal, parietal, temporal and occipital bones." [MP:0000076, Wikipedia:Calvaria_(skull)]
comment: calvaria part_of neurocranium in FMA, but no definition. MP class now merged. Gray's Anatomy's list includes the Ethmoid and Sphenoid bone in the Calvaria. Some books state that calvaria consists of just the frontal bone, parietal bone, temporal bone, and occipital bone.
xref: FMA:52800
is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0004340
name: allantois
def: "Allantois (plural allantoides or allantoises) is a part of a developing animal conceptus (which consists of all embryonic and extra-embryonic tissues). It helps the embryo exchange gases and handle liquid waste. The allantois, along with the amnion and chorion (other embryonic membranes), identify humans as amniotes, along with reptiles, dinosaurs, birds, and other mammals. Of the vertebrates, only Ichthyopsidas lack this structure. [WP,unvetted]." [MP:0001726, Wikipedia:Allantois]
xref: BTO:0000474
xref: EHDAA2:0000114
xref: EMAPA:16107
xref: EMAPA:28547
xref: HOG:0000738
xref: ncithesaurus:Allantois
is_a: UBERON:0000478 ! extraembryonic structure
[Term]
id: UBERON:0004341
name: primitive streak
def: "the midline ridge of the embryonic epiblast that later develops into mesoderm and endoderm" [MP:0002231, Wikipedia:Primitive_streak]
comment: TODO - check
xref: EHDAA2:0001525
xref: EMAPA:16072
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Gray13.png/200px-Gray13.png
xref: ncithesaurus:Primitive_Streak
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0002532 ! epiblast
[Term]
id: UBERON:0004342
name: branchial arch artery
def: "the vessels formed within the six (five in mammals) pairs of branchial arches in embryogenesis; in the adult, some of these vessels give rise to the great vessels" [MP:0002672]
comment: HOG has this as homologous to the aortic arch
xref: EHDAA2:0000186
xref: EMAPA:16684
is_a: UBERON:0001637 ! implied link automatically realized ! artery
relationship: part_of UBERON:0002539
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0004343
name: foot plate
def: "the distal elements of the developing limb of vertebrates that will give rise to the pedal appendages (e.g. hand, foot, paw)" [MP:0004576]
synonym: "autopod plate" EXACT []
xref: ncithesaurus:Foot_Plate
is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure
relationship: develops_into UBERON:0002470
intersection_of: UBERON:0002050 ! embryonic structure
intersection_of: develops_into UBERON:0002470 ! autopod
[Term]
id: UBERON:0004344
name: cardinal vein
def: "any of the four veins in the developing vertebrate embryo which run along each side of the vertebral column" [MP:0004783]
xref: EHDAA:1310
xref: EHDAA2:0000213
xref: EMAPA:16354
xref: HOG:0001197
xref: ncithesaurus:Cardinal_Vein
xref: XAO:0000052
is_a: UBERON:0001638 ! vein
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0004345
name: trophectoderm
def: "outermost layer of cells in the blastodermic vesicle, which will develop into the trophoblast layer and then contact the endometrium and take part in establishing the embryo's means of nutrition" [MP:0005028]
xref: BTO:0001840
xref: EHDAA2:0002091
xref: EMAPA:16046
xref: HOG:0000979
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0004346
name: gubernaculum
alt_id: UBERON:0000452
alt_id: UBERON:BTO_0002813-FMA_20421
def: "enitoinguinal ligaments that, in the male, connect the fetal testis to the developing scrotum, and, in the female, connect the ovaries to the uterus[MP]. The paired Gabernacula are folds of peritoneum that attach to the caudal end of the gonads (testes in males and ovaries in females)." [MP:0005149, Wikipedia:Gubernaculum]
comment: WP def is male/female, split term? EMAP is male-specific. vestigial adult in FMA. TODO
synonym: "gubernaculum testis" EXACT []
xref: BTO:0002813
xref: EMAPA:19089
xref: FMA:20421
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: attached_to UBERON:0000991 ! gonad
relationship: develops_from UBERON:0003064 ! intermediate mesoderm
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0002358 ! peritoneum
[Term]
id: UBERON:0004347
name: limb bud
def: "the mesenchymal outgrowth on the lateral trunk of the embryo that develops into the limbs[MP]. the limb bud is a structure formed by the developing limb, derived from lateral plate mesoderm. It is intimately related with the apical ectodermal ridge, which secretes factors (fibroblast growth factors for example) inducing the initial differentiation of the limb bud. In turn, the mesodermal tissue of the limb bud secretes factors sustaining the development of the Apical Ectodermal Ridge. 1: Developmental Biology, 8th ed[WP]." [MP:0005650, Wikipedia:Limb_bud]
comment: induced_by Fgf10, capable of initiating limb forming interactions between endoderm and mesoderm
synonym: "limb buds" EXACT PLURAL []
xref: BTO:0001640
xref: GAID:1307
xref: ncithesaurus:Limb_Bud
xref: XAO:0003161
is_a: UBERON:0004357 ! limb/fin bud
relationship: develops_into UBERON:0002101 ! limb
relationship: induced_by UBERON:0003081 ! lateral plate mesoderm
[Term]
id: UBERON:0004348
name: optic eminence
def: "the embryonic structure that gives rise to the corneal ectoderm" [MP:0006305]
xref: EHDAA2:0001308
xref: EMAPA:16322
xref: EMAPA:17003
xref: HOG:0001296
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_into UBERON:0000964 ! cornea
[Term]
id: UBERON:0004350
name: fourth branchial arch artery
def: "the vessels formed within the fourth pair of branchial arches in embryogenesis" [MP:0006354]
xref: EHDAA2:0000087
is_a: UBERON:0004342 ! implied link automatically realized ! branchial arch artery
relationship: part_of UBERON:0003115
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0003115 ! pharyngeal arch 4
[Term]
id: UBERON:0004351
name: sixth branchial arch artery
def: "the vessels formed within the sixth pair of branchial arches in embryogenesis" [MP:0006355]
is_a: UBERON:0004342 ! implied link automatically realized ! branchial arch artery
relationship: part_of UBERON:0003117
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0003117 ! pharyngeal arch 6
[Term]
id: UBERON:0004352
name: third branchial arch artery
def: "the vessels formed within the third pair of branchial arches in embryogenesis" [MP:0006356]
xref: EHDAA2:0000070
is_a: UBERON:0004342 ! implied link automatically realized ! branchial arch artery
relationship: part_of UBERON:0003114
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0003114 ! pharyngeal arch 3
[Term]
id: UBERON:0004353
name: female inguinal canal
def: "." [MP:0008015]
is_a: UBERON:0003702 ! implied link automatically realized ! inguinal canal
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000474
intersection_of: UBERON:0003702 ! inguinal canal
intersection_of: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0004354
name: male inguinal canal
def: "." [MP:0008016]
is_a: UBERON:0003702 ! implied link automatically realized ! inguinal canal
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000079
intersection_of: UBERON:0003702 ! inguinal canal
intersection_of: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0004355
name: podocyte foot process
def: "the footlike extension of podocytes that interdigitate with one another to form the walls of the glomerular capillaries" [MP:0008059]
comment: TODO - submit to GO
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0004356
name: apical ectodermal ridge
def: "multilayered ectodermal region at the distal tip of a limb bud necessary for the proper development of the underlying mesenchyme[MP]. Along with the zone of polarizing activity, it is a crucial organizing region during limb development[WP]." [MP:0001676, Wikipedia:Apical_ectodermal_ridge]
comment: Functions: maintaining mesenchyme in plastic proliferating state; maintaining expression of A-P axis genes; interacting with D-V proteins. Genes: AER induced by Fgf10 in mesenchyme. AER secretes Fgf8, which stimulates mitosis in the mesenchyme causing Fgf10 production - positive feedback loop
synonym: "AER" RELATED [MP:0001676]
xref: ncithesaurus:Apical_Ectodermal_Ridge
xref: ZFA:0001702
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: induced_by UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0004347 ! limb bud
[Term]
id: UBERON:0004357
name: limb/fin bud
comment: Genes: In limb buds of chick and mouse, Shh expression is activated as soon as there is a morphological bud, whereas in S. canicula fin buds, consistent with reported data in other cartilaginous fishes, Shh is transcribed late in fin development[PMID:17187056]
xref: HOG:0001258
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0003102 ! surface structure
relationship: develops_into UBERON:0004708 ! limb/fin
[Term]
id: UBERON:0004358
name: caput epididymis
def: "the head of the epididymis" [MP:0002660]
synonym: "caput" BROAD [MP:0002660]
synonym: "caput epididymidis" RELATED [BTO:0000336]
synonym: "epidymis head" EXACT [FMA:18259]
synonym: "head of epidymis " EXACT []
xref: BTO:0000336
xref: EMAPA:19291
xref: FMA:18259
xref: MA:0002762
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001301 ! epididymis
[Term]
id: UBERON:0004359
name: corpus epididymis
def: "the body of the epididymis" [MP:0002661]
synonym: "body of epididymis " EXACT [FMA:18260]
synonym: "body of epidymis " EXACT []
synonym: "corpus" BROAD [MP:0002661]
synonym: "corpus epididymidis" RELATED [BTO:0000209]
synonym: "epididymal body" EXACT [FMA:18260]
synonym: "epididymis body" EXACT [FMA:18260]
synonym: "epidymis body" EXACT []
xref: BTO:0000209
xref: EMAPA:19293
xref: FMA:18260
xref: MA:0002764
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001301 ! epididymis
[Term]
id: UBERON:0004360
name: cauda epididymis
def: "the tail of the epididymis" [MP:0002662]
synonym: "cauda epididymidis" EXACT [BTO:0000210]
synonym: "corpus" BROAD [MP:0002662]
synonym: "epididymal cauda" EXACT [BTO:0000210]
synonym: "epididymal tail" EXACT [FMA:18261]
synonym: "epididymis tail" EXACT [FMA:18261]
synonym: "epidymis tail" EXACT []
synonym: "tail of epididymis " EXACT [FMA:18261]
synonym: "tail of epidymis " EXACT []
xref: BTO:0000210
xref: EMAPA:19292
xref: FMA:18261
xref: MA:0002763
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001301 ! epididymis
[Term]
id: UBERON:0004361
name: stylohyoid ligament
def: "the fibrous cord that connects the tip of the styloid process of the temporal bone to the lesser horn of the hyoid bone" [MP:0009918]
xref: FMA:72308
xref: MA:0002957
is_a: UBERON:0000211 ! ligament
relationship: part_of UBERON:0000211 ! ligament
[Term]
id: UBERON:0004362
name: mandibular arch
def: "First of six branchial arches that develops in fetal life during the fourth week of development.[1] It is located between the stomodeum and the first pharyngeal groove." [Wikipedia:First_branchial_arch]
comment: TODO - check comparative anatomy. In XAO, develops_from visceral pouch 1
subset: uberon_slim
synonym: "1st arch" RELATED [EHDAA2:0000006]
synonym: "1st pharyngeal arch" EXACT []
synonym: "branchial arch 1" EXACT SENSU []
synonym: "first branchial arch" EXACT SENSU []
synonym: "first pharyngeal arch" EXACT []
synonym: "first visceral arch" EXACT SENSU []
synonym: "pharyngeal arch 1" EXACT []
synonym: "visceral arch 1" EXACT SENSU []
xref: EHDAA2:0000006
xref: HOG:0000296
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray48.png/200px-Gray48.png
xref: ncithesaurus:First_Pharyngeal_Arch
xref: XAO:0000097
xref: ZFA:0001612
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0004363
name: aortic arch
alt_id: UBERON:FMA_3768-MA_0000475-MIAA_0000059
def: "one of a series of six paired embryological vascular structures which give rise to several major arteries." [Wikipedia:Aortic_arches]
comment: Do not confuse with arch of aorta
subset: uberon_slim
synonym: "aortic arches" EXACT PLURAL [ZFA:0005004]
xref: EHDAA:7327
xref: EHDAA2:0000132
xref: HOG:0000122
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Gray473.png/200px-Gray473.png
xref: ncithesaurus:Aortic_Arch
xref: XAO:0000341
xref: ZFA:0005004
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0002342 ! neural crest
relationship: develops_into UBERON:0001637 ! artery
relationship: part_of UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0004364
name: ectoplacental cone
def: "thickened trophoblast of the blastocyst in rodents that becomes the fetal portion of the placenta" [MP:0001717]
xref: BTO:0001715
xref: EMAPA:16059
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000088 ! trophoblast
[Term]
id: UBERON:0004365
name: vitelline blood vessel
def: "blood vesself of the yolk sac." [MP:0001719]
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0001040
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0004366
name: extraembryonic ectoderm
def: "layer of the endoderm of the extraembryonic tissue." [MP:0002583]
is_a: UBERON:0000924 ! implied link automatically realized ! ectoderm
relationship: part_of UBERON:0000478
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0000478 ! extraembryonic structure
[Term]
id: UBERON:0004367
name: Descemet's membrane
def: "transparent homogeneous acellular layer found between the substantia propria and the endothelial layer of the cornea[MP]. The strong, resistant, thin, noncellular fourth layer of the cornea, located between the endothelium (from which it is secreted) and the stroma. (Cline et al., Dictionary of Visual Science, 4th ed)." [MP:0004285]
synonym: "Descemet membrane" EXACT []
synonym: "Descemet's posterior elastic lamina" EXACT [FMA:58309]
synonym: "lamina limitans posterior" EXACT [FMA:58309]
synonym: "posterior limiting lamina " EXACT [MA:0001246]
synonym: "posterior limiting lamina of cornea " EXACT [FMA:58309]
xref: FMA:58309
xref: GAID:894
xref: MA:0001246
xref: ncithesaurus:Descemet_s_Membrane
xref: ZFA:0001686
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: adjacent_to UBERON:0001777 ! substantia propria of cornea
relationship: adjacent_to UBERON:0001985 ! corneal endothelium
relationship: part_of UBERON:0000964 ! cornea
[Term]
id: UBERON:0004368
name: Reichert's cartilage
def: "cartilage found in the mesenchyme of the second branchial arch in the embryo, from which develop the stapes, the styloid processes, the stylohyoid ligaments, and the lesser cornua of the hyoid bone." [MP:0004916]
synonym: "hyaloid cartilage" EXACT [MP:0004916]
synonym: "Reichert cartilage" EXACT []
synonym: "second pharyngeal arch cartilage" EXACT [MP:0004916]
xref: EMAPA:17351
xref: EMAPA:17622
is_a: UBERON:0002418 ! cartilage
relationship: part_of UBERON:0003066 ! hyoid arch
relationship: part_of UBERON:0003104 ! mesenchyme
[Term]
id: UBERON:0004369
name: Reichert's membrane
def: "a thick multilayered basement membrane between the parietal endoderm cells and the trophoblast cells" [DOI:10.1007/BF00184752]
is_a: UBERON:0002050 ! embryonic structure
relationship: surrounded_by UBERON:0000088 ! trophoblast
relationship: surrounded_by UBERON:0000925 ! endoderm
[Term]
id: UBERON:0004370
name: anterior limiting lamina of cornea
synonym: "anterior limiting lamina of cornea" EXACT [FMA:58273]
synonym: "Bowman's anterior elastic lamina" EXACT [FMA:58273]
synonym: "Bowman's layer" EXACT [FMA:58273]
synonym: "Bowman's membrane" EXACT [FMA:58273]
synonym: "lamina limitans anterior (cornea)" EXACT [FMA:58273]
synonym: "Reichert's membrane" RELATED DUBIOUS [http://sourceforge.net/tracker/?func=detail&aid=2956371&group_id=76834&atid=974957]
xref: FMA:58273
xref: ncithesaurus:Bowman_s_Membrane
xref: ZFA:0001684
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000964 ! cornea
[Term]
id: UBERON:0004371
name: first branchial arch artery
def: "the vessels formed within the first pair of branchial arches in embryogenesis" [MP:0006356]
xref: EHDAA2:0000007
is_a: UBERON:0004342 ! implied link automatically realized ! branchial arch artery
relationship: part_of UBERON:0004362
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0004362 ! mandibular arch
[Term]
id: UBERON:0004372
name: second branchial arch artery
def: "the vessels formed within the first pair of branchial arches in embryogenesis" [MP:0006356]
xref: EHDAA2:0000051
is_a: UBERON:0004342 ! implied link automatically realized ! branchial arch artery
relationship: part_of UBERON:0003066
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0003066 ! hyoid arch
[Term]
id: UBERON:0004374
name: vitelline vasculature
def: "vasculature of the yolk sac." [MP:0001719]
is_a: UBERON:0002049 ! implied link automatically realized ! vasculature
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0001040
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0004375
name: bone of appendage
def: "A bone that is part of an appendage [Obol]." [OBOL:automatic]
synonym: "appendage bone" EXACT []
is_a: UBERON:0001474 ! implied link automatically realized ! bone
relationship: part_of UBERON:0000026
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000026 ! appendage
[Term]
id: UBERON:0004376
name: fin bone
def: "A bone that is part of a fin [Obol]." [OBOL:automatic]
synonym: "bone of fin" EXACT []
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004375 ! implied link automatically realized ! bone of appendage
relationship: part_of UBERON:0002534
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002534 ! fin
[Term]
id: UBERON:0004377
name: distal metaphysis
xref: FMA:32824
is_a: UBERON:0001438 ! implied link automatically realized ! metaphysis
relationship: in_distal_side_of UBERON:0004769
intersection_of: UBERON:0001438 ! metaphysis
intersection_of: in_distal_side_of UBERON:0004769 ! diaphysis
[Term]
id: UBERON:0004378
name: proximal metaphysis
xref: FMA:32823
is_a: UBERON:0001438 ! implied link automatically realized ! metaphysis
relationship: in_proximal_side_of UBERON:0004769
intersection_of: UBERON:0001438 ! metaphysis
intersection_of: in_proximal_side_of UBERON:0004769 ! diaphysis
[Term]
id: UBERON:0004379
name: distal epiphysis
xref: FMA:32822
is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis
relationship: adjacent_to UBERON:0004377
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: adjacent_to UBERON:0004377 ! distal metaphysis
[Term]
id: UBERON:0004380
name: proximal epiphysis
xref: FMA:32821
is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis
relationship: adjacent_to UBERON:0004378
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: adjacent_to UBERON:0004378 ! proximal metaphysis
[Term]
id: UBERON:0004381
name: skeleton of limb
def: "A subdivision of skeletal system that is part of a limb [Obol]." [OBOL:automatic]
synonym: "limb skeleton" EXACT []
synonym: "set of bones of limb" EXACT []
xref: EHDAA2:0002221
is_a: UBERON:0000075 ! implied link automatically realized ! subdivision of skeletal system
relationship: part_of UBERON:0002101
intersection_of: UBERON:0000075 ! subdivision of skeletal system
intersection_of: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0004382
name: epiphysis of humerus
def: "An epiphysis that is part of a humerus [Obol]." [OBOL:automatic]
synonym: "humeral epiphysis" EXACT [OBOL:automatic]
xref: FMA:32825
is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis
relationship: part_of UBERON:0000976
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0000976 ! humerus
[Term]
id: UBERON:0004383
name: epiphysis of tibia
def: "An epiphysis that is part of a tibia [Obol]." [OBOL:automatic]
xref: FMA:33112
is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis
relationship: part_of UBERON:0000979
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0000979 ! tibia
[Term]
id: UBERON:0004384
name: epiphysis of femur
def: "An epiphysis that is part of a femur [Obol]." [OBOL:automatic]
xref: FMA:32838
is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis
relationship: part_of UBERON:0000981
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0000981 ! femur
[Term]
id: UBERON:0004385
name: epiphysis of radius
def: "An epiphysis that is part of a radius [Obol]." [OBOL:automatic]
xref: FMA:33770
is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis
relationship: part_of UBERON:0001423
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0001423 ! radius
[Term]
id: UBERON:0004386
name: epiphysis of ulna
def: "An epiphysis that is part of a ulna [Obol]." [OBOL:automatic]
xref: FMA:33748
is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis
relationship: part_of UBERON:0001424
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0001424 ! ulna
[Term]
id: UBERON:0004387
name: epiphysis of phalanx of finger
def: "An epiphysis that is part of a phalanx of finger [Obol]." [OBOL:automatic]
xref: FMA:240707
is_a: UBERON:0004446 ! implied link automatically realized ! epiphysis of phalanx
relationship: part_of UBERON:0001436
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0001436 ! phalanx of finger
[Term]
id: UBERON:0004388
name: epiphysis of fibula
def: "An epiphysis that is part of a fibula [Obol]." [OBOL:automatic]
xref: FMA:33726
is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis
relationship: part_of UBERON:0001446
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0001446 ! fibula
[Term]
id: UBERON:0004389
name: epiphysis of metatarsal bone
def: "An epiphysis that is part of a metatarsal bone [Obol]." [OBOL:automatic]
xref: FMA:33814
is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis
relationship: part_of UBERON:0001448
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0001448 ! metatarsal bone
[Term]
id: UBERON:0004390
name: epiphysis of metacarpal bone
def: "An epiphysis that is part of a metacarpal bone [Obol]." [OBOL:automatic]
xref: FMA:33792
is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis
relationship: part_of UBERON:0002374
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0002374 ! metacarpal bone
[Term]
id: UBERON:0004391
name: epiphysis of first metacarpal bone
def: "An epiphysis that is part of a metacarpal bone of digit 1 [Obol]." [OBOL:automatic]
xref: FMA:33793
is_a: UBERON:0004390 ! implied link automatically realized ! epiphysis of metacarpal bone
relationship: part_of UBERON:0003645
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003645 ! metacarpal bone of digit 1
[Term]
id: UBERON:0004392
name: epiphysis of second metacarpal bone
def: "An epiphysis that is part of a metacarpal bone of digit 2 [Obol]." [OBOL:automatic]
xref: FMA:33794
is_a: UBERON:0004390 ! implied link automatically realized ! epiphysis of metacarpal bone
relationship: part_of UBERON:0003646
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003646 ! metacarpal bone of digit 2
[Term]
id: UBERON:0004393
name: epiphysis of third metacarpal bone
def: "An epiphysis that is part of a metacarpal bone of digit 3 [Obol]." [OBOL:automatic]
xref: FMA:86328
is_a: UBERON:0004390 ! implied link automatically realized ! epiphysis of metacarpal bone
relationship: part_of UBERON:0003647
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003647 ! metacarpal bone of digit 3
[Term]
id: UBERON:0004394
name: epiphysis of fourth metacarpal bone
def: "An epiphysis that is part of a metacarpal bone of digit 4 [Obol]." [OBOL:automatic]
xref: FMA:86329
is_a: UBERON:0004390 ! implied link automatically realized ! epiphysis of metacarpal bone
relationship: part_of UBERON:0003648
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003648 ! metacarpal bone of digit 4
[Term]
id: UBERON:0004395
name: epiphysis of first metatarsal bone
def: "An epiphysis that is part of a metatarsal bone of digit 1 [Obol]." [OBOL:automatic]
xref: FMA:33815
is_a: UBERON:0004389 ! implied link automatically realized ! epiphysis of metatarsal bone
relationship: part_of UBERON:0003650
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003650 ! metatarsal bone of digit 1
[Term]
id: UBERON:0004396
name: epiphysis of second metatarsal bone
def: "An epiphysis that is part of a metatarsal bone of digit 2 [Obol]." [OBOL:automatic]
xref: FMA:33816
is_a: UBERON:0004389 ! implied link automatically realized ! epiphysis of metatarsal bone
relationship: part_of UBERON:0003651
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003651 ! metatarsal bone of digit 2
[Term]
id: UBERON:0004397
name: epiphysis of third metatarsal bone
def: "An epiphysis that is part of a metatarsal bone of digit 3 [Obol]." [OBOL:automatic]
xref: FMA:86313
is_a: UBERON:0004389 ! implied link automatically realized ! epiphysis of metatarsal bone
relationship: part_of UBERON:0003652
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003652 ! metatarsal bone of digit 3
[Term]
id: UBERON:0004398
name: epiphysis of fourth metatarsal bone
def: "An epiphysis that is part of a metatarsal bone of digit 4 [Obol]." [OBOL:automatic]
xref: FMA:86314
is_a: UBERON:0004389 ! implied link automatically realized ! epiphysis of metatarsal bone
relationship: part_of UBERON:0003653
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003653 ! metatarsal bone of digit 4
[Term]
id: UBERON:0004399
name: epiphysis of fifth metatarsal bone
def: "An epiphysis that is part of a metatarsal bone of digit 5 [Obol]." [OBOL:automatic]
xref: FMA:86315
is_a: UBERON:0004389 ! implied link automatically realized ! epiphysis of metatarsal bone
relationship: part_of UBERON:0003654
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003654 ! metatarsal bone of digit 5
[Term]
id: UBERON:0004400
name: bone tissue of epiphysis
def: "A portion of bone tissue that is part of a epiphysis [Obol]." [OBOL:automatic]
xref: FMA:241364
is_a: UBERON:0003587 ! implied link automatically realized ! limb connective tissue
is_a: UBERON:0005808 ! implied link automatically realized ! bone tissue of long bone
relationship: part_of UBERON:0001437
intersection_of: UBERON:0002481 ! bone tissue
intersection_of: part_of UBERON:0001437 ! epiphysis
[Term]
id: UBERON:0004401
name: bone tissue of distal epiphysis
def: "A portion of bone tissue that is part of a distal epiphysis [Obol]." [OBOL:automatic]
xref: FMA:241374
is_a: UBERON:0004400 ! implied link automatically realized ! bone tissue of epiphysis
relationship: part_of UBERON:0004379
intersection_of: UBERON:0002481 ! bone tissue
intersection_of: part_of UBERON:0004379 ! distal epiphysis
[Term]
id: UBERON:0004402
name: bone tissue of proximal epiphysis
def: "A portion of bone tissue that is part of a proximal epiphysis [Obol]." [OBOL:automatic]
xref: FMA:241372
is_a: UBERON:0004400 ! implied link automatically realized ! bone tissue of epiphysis
relationship: part_of UBERON:0004380
intersection_of: UBERON:0002481 ! bone tissue
intersection_of: part_of UBERON:0004380 ! proximal epiphysis
[Term]
id: UBERON:0004403
name: periosteum of epiphysis
def: "A periosteum that is part of a epiphysis [Obol]." [OBOL:automatic]
xref: FMA:32687
is_a: UBERON:0002515 ! implied link automatically realized ! periosteum
relationship: part_of UBERON:0001437
intersection_of: UBERON:0002515 ! periosteum
intersection_of: part_of UBERON:0001437 ! epiphysis
[Term]
id: UBERON:0004404
name: distal epiphysis of humerus
def: "A distal epiphysis that is part of a humerus [Obol]." [OBOL:automatic]
xref: FMA:32826
is_a: UBERON:0004379 ! implied link automatically realized ! distal epiphysis
is_a: UBERON:0004382 ! implied link automatically realized ! epiphysis of humerus
relationship: part_of UBERON:0000976
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0000976 ! humerus
[Term]
id: UBERON:0004405
name: distal epiphysis of tibia
def: "A distal epiphysis that is part of a tibia [Obol]." [OBOL:automatic]
xref: FMA:33116
is_a: UBERON:0004379 ! implied link automatically realized ! distal epiphysis
is_a: UBERON:0004383 ! implied link automatically realized ! epiphysis of tibia
relationship: part_of UBERON:0000979
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0000979 ! tibia
[Term]
id: UBERON:0004406
name: distal epiphysis of femur
def: "A distal epiphysis that is part of a femur [Obol]." [OBOL:automatic]
xref: FMA:32844
is_a: UBERON:0004379 ! implied link automatically realized ! distal epiphysis
is_a: UBERON:0004384 ! implied link automatically realized ! epiphysis of femur
relationship: part_of UBERON:0000981
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0000981 ! femur
[Term]
id: UBERON:0004407
name: distal epiphysis of radius
def: "A distal epiphysis that is part of a radius [Obol]." [OBOL:automatic]
xref: FMA:33776
is_a: UBERON:0004379 ! implied link automatically realized ! distal epiphysis
is_a: UBERON:0004385 ! implied link automatically realized ! epiphysis of radius
relationship: part_of UBERON:0001423
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0001423 ! radius
[Term]
id: UBERON:0004408
name: distal epiphysis of ulna
def: "A distal epiphysis that is part of a ulna [Obol]." [OBOL:automatic]
xref: FMA:33754
is_a: UBERON:0004379 ! implied link automatically realized ! distal epiphysis
is_a: UBERON:0004386 ! implied link automatically realized ! epiphysis of ulna
relationship: part_of UBERON:0001424
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0001424 ! ulna
[Term]
id: UBERON:0004409
name: distal epiphysis of phalanx of finger
def: "A distal epiphysis that is part of a phalanx of finger [Obol]." [OBOL:automatic]
xref: FMA:226577
is_a: UBERON:0004387 ! implied link automatically realized ! epiphysis of phalanx of finger
is_a: UBERON:0004448 ! implied link automatically realized ! distal epiphysis of phalanx
relationship: part_of UBERON:0001436
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0001436 ! phalanx of finger
[Term]
id: UBERON:0004410
name: distal epiphysis of fibula
def: "A distal epiphysis that is part of a fibula [Obol]." [OBOL:automatic]
xref: FMA:33732
is_a: UBERON:0004379 ! implied link automatically realized ! distal epiphysis
is_a: UBERON:0004388 ! implied link automatically realized ! epiphysis of fibula
relationship: part_of UBERON:0001446
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0001446 ! fibula
[Term]
id: UBERON:0004411
name: proximal epiphysis of humerus
def: "A proximal epiphysis that is part of a humerus [Obol]." [OBOL:automatic]
xref: FMA:23362
is_a: UBERON:0004380 ! implied link automatically realized ! proximal epiphysis
is_a: UBERON:0004382 ! implied link automatically realized ! epiphysis of humerus
relationship: part_of UBERON:0000976
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0000976 ! humerus
[Term]
id: UBERON:0004412
name: proximal epiphysis of femur
def: "A proximal epiphysis that is part of a femur [Obol]." [OBOL:automatic]
xref: FMA:32841
is_a: UBERON:0004380 ! implied link automatically realized ! proximal epiphysis
is_a: UBERON:0004384 ! implied link automatically realized ! epiphysis of femur
relationship: part_of UBERON:0000981
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0000981 ! femur
[Term]
id: UBERON:0004413
name: proximal epiphysis of radius
def: "A proximal epiphysis that is part of a radius [Obol]." [OBOL:automatic]
xref: FMA:39780
is_a: UBERON:0004380 ! implied link automatically realized ! proximal epiphysis
is_a: UBERON:0004385 ! implied link automatically realized ! epiphysis of radius
relationship: part_of UBERON:0001423
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0001423 ! radius
[Term]
id: UBERON:0004414
name: proximal epiphysis of phalanx of finger
def: "A proximal epiphysis that is part of a phalanx of finger [Obol]." [OBOL:automatic]
xref: FMA:226482
is_a: UBERON:0004387 ! implied link automatically realized ! epiphysis of phalanx of finger
is_a: UBERON:0004447 ! implied link automatically realized ! proximal epiphysis of phalanx
relationship: part_of UBERON:0001436
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0001436 ! phalanx of finger
[Term]
id: UBERON:0004415
name: proximal epiphysis of metatarsal bone
def: "A proximal epiphysis that is part of a metatarsal bone [Obol]." [OBOL:automatic]
xref: FMA:33817
is_a: UBERON:0004380 ! implied link automatically realized ! proximal epiphysis
is_a: UBERON:0004389 ! implied link automatically realized ! epiphysis of metatarsal bone
relationship: part_of UBERON:0001448
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0001448 ! metatarsal bone
[Term]
id: UBERON:0004416
name: proximal epiphysis of metacarpal bone
def: "A proximal epiphysis that is part of a metacarpal bone [Obol]." [OBOL:automatic]
xref: FMA:33795
is_a: UBERON:0004380 ! implied link automatically realized ! proximal epiphysis
is_a: UBERON:0004390 ! implied link automatically realized ! epiphysis of metacarpal bone
relationship: part_of UBERON:0002374
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0002374 ! metacarpal bone
[Term]
id: UBERON:0004417
name: proximal epiphysis of phalanx of thumb
def: "A proximal epiphysis that is part of a hand digit 1 phalanx [Obol]." [OBOL:automatic]
xref: FMA:37489
is_a: UBERON:0004414 ! implied link automatically realized ! proximal epiphysis of phalanx of finger
relationship: part_of UBERON:0003620
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003620 ! hand digit 1 phalanx
[Term]
id: UBERON:0004418
name: proximal epiphysis of phalanx of index finger
def: "A proximal epiphysis that is part of a hand digit 2 phalanx [Obol]." [OBOL:automatic]
xref: FMA:37498
is_a: UBERON:0004414 ! implied link automatically realized ! proximal epiphysis of phalanx of finger
relationship: part_of UBERON:0003636
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003636 ! hand digit 2 phalanx
[Term]
id: UBERON:0004419
name: proximal epiphysis of phalanx of middle finger
def: "A proximal epiphysis that is part of a hand digit 3 phalanx [Obol]." [OBOL:automatic]
xref: FMA:37510
is_a: UBERON:0004414 ! implied link automatically realized ! proximal epiphysis of phalanx of finger
relationship: part_of UBERON:0003637
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003637 ! hand digit 3 phalanx
[Term]
id: UBERON:0004420
name: proximal epiphysis of phalanx of ring finger
def: "A proximal epiphysis that is part of a hand digit 4 phalanx [Obol]." [OBOL:automatic]
xref: FMA:37522
is_a: UBERON:0004414 ! implied link automatically realized ! proximal epiphysis of phalanx of finger
relationship: part_of UBERON:0003638
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003638 ! hand digit 4 phalanx
[Term]
id: UBERON:0004421
name: proximal epiphysis of phalanx of little finger
def: "A proximal epiphysis that is part of a hand digit 5 phalanx [Obol]." [OBOL:automatic]
xref: FMA:37534
is_a: UBERON:0004414 ! implied link automatically realized ! proximal epiphysis of phalanx of finger
relationship: part_of UBERON:0003639
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003639 ! hand digit 5 phalanx
[Term]
id: UBERON:0004422
name: proximal epiphysis of first metacarpal bone
def: "A proximal epiphysis that is part of a metacarpal bone of digit 1 [Obol]." [OBOL:automatic]
xref: FMA:42788
is_a: UBERON:0004391 ! implied link automatically realized ! epiphysis of first metacarpal bone
is_a: UBERON:0004416 ! implied link automatically realized ! proximal epiphysis of metacarpal bone
relationship: part_of UBERON:0003645
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003645 ! metacarpal bone of digit 1
[Term]
id: UBERON:0004423
name: proximal epiphysis of second metacarpal bone
def: "A proximal epiphysis that is part of a metacarpal bone of digit 2 [Obol]." [OBOL:automatic]
xref: FMA:42791
is_a: UBERON:0004392 ! implied link automatically realized ! epiphysis of second metacarpal bone
is_a: UBERON:0004416 ! implied link automatically realized ! proximal epiphysis of metacarpal bone
relationship: part_of UBERON:0003646
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003646 ! metacarpal bone of digit 2
[Term]
id: UBERON:0004424
name: proximal epiphysis of third metacarpal bone
def: "A proximal epiphysis that is part of a metacarpal bone of digit 3 [Obol]." [OBOL:automatic]
xref: FMA:42794
is_a: UBERON:0004393 ! implied link automatically realized ! epiphysis of third metacarpal bone
is_a: UBERON:0004416 ! implied link automatically realized ! proximal epiphysis of metacarpal bone
relationship: part_of UBERON:0003647
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003647 ! metacarpal bone of digit 3
[Term]
id: UBERON:0004425
name: proximal epiphysis of fourth metacarpal bone
def: "A proximal epiphysis that is part of a metacarpal bone of digit 4 [Obol]." [OBOL:automatic]
xref: FMA:42797
is_a: UBERON:0004394 ! implied link automatically realized ! epiphysis of fourth metacarpal bone
is_a: UBERON:0004416 ! implied link automatically realized ! proximal epiphysis of metacarpal bone
relationship: part_of UBERON:0003648
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003648 ! metacarpal bone of digit 4
[Term]
id: UBERON:0004426
name: proximal epiphysis of fifth metacarpal bone
def: "A proximal epiphysis that is part of a metacarpal bone of digit 5 [Obol]." [OBOL:automatic]
xref: FMA:42800
is_a: UBERON:0004416 ! implied link automatically realized ! proximal epiphysis of metacarpal bone
relationship: part_of UBERON:0003649
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003649 ! metacarpal bone of digit 5
[Term]
id: UBERON:0004427
name: proximal epiphysis of first metatarsal bone
def: "A proximal epiphysis that is part of a metatarsal bone of digit 1 [Obol]." [OBOL:automatic]
xref: FMA:42963
is_a: UBERON:0004395 ! implied link automatically realized ! epiphysis of first metatarsal bone
is_a: UBERON:0004415 ! implied link automatically realized ! proximal epiphysis of metatarsal bone
relationship: part_of UBERON:0003650
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003650 ! metatarsal bone of digit 1
[Term]
id: UBERON:0004428
name: proximal epiphysis of second metatarsal bone
def: "A proximal epiphysis that is part of a metatarsal bone of digit 2 [Obol]." [OBOL:automatic]
xref: FMA:42964
is_a: UBERON:0004396 ! implied link automatically realized ! epiphysis of second metatarsal bone
is_a: UBERON:0004415 ! implied link automatically realized ! proximal epiphysis of metatarsal bone
relationship: part_of UBERON:0003651
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003651 ! metatarsal bone of digit 2
[Term]
id: UBERON:0004429
name: proximal epiphysis of third metatarsal bone
def: "A proximal epiphysis that is part of a metatarsal bone of digit 3 [Obol]." [OBOL:automatic]
xref: FMA:42965
is_a: UBERON:0004397 ! implied link automatically realized ! epiphysis of third metatarsal bone
is_a: UBERON:0004415 ! implied link automatically realized ! proximal epiphysis of metatarsal bone
relationship: part_of UBERON:0003652
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003652 ! metatarsal bone of digit 3
[Term]
id: UBERON:0004430
name: proximal epiphysis of fourth metatarsal bone
def: "A proximal epiphysis that is part of a metatarsal bone of digit 4 [Obol]." [OBOL:automatic]
xref: FMA:42966
is_a: UBERON:0004398 ! implied link automatically realized ! epiphysis of fourth metatarsal bone
is_a: UBERON:0004415 ! implied link automatically realized ! proximal epiphysis of metatarsal bone
relationship: part_of UBERON:0003653
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003653 ! metatarsal bone of digit 4
[Term]
id: UBERON:0004431
name: proximal epiphysis of fifth metatarsal bone
def: "A proximal epiphysis that is part of a metatarsal bone of digit 5 [Obol]." [OBOL:automatic]
xref: FMA:42967
is_a: UBERON:0004399 ! implied link automatically realized ! epiphysis of fifth metatarsal bone
is_a: UBERON:0004415 ! implied link automatically realized ! proximal epiphysis of metatarsal bone
relationship: part_of UBERON:0003654
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003654 ! metatarsal bone of digit 5
[Term]
id: UBERON:0004432
name: proximal epiphysis of distal phalanx of index finger
def: "A proximal epiphysis that is part of a distal phalanx of hand digit 2 [Obol]." [OBOL:automatic]
xref: FMA:37505
is_a: UBERON:0004418 ! implied link automatically realized ! proximal epiphysis of phalanx of index finger
relationship: part_of UBERON:0004311
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004311 ! distal phalanx of hand digit 2
[Term]
id: UBERON:0004433
name: proximal epiphysis of distal phalanx of middle finger
def: "A proximal epiphysis that is part of a distal phalanx of hand digit 3 [Obol]." [OBOL:automatic]
xref: FMA:37517
is_a: UBERON:0004419 ! implied link automatically realized ! proximal epiphysis of phalanx of middle finger
relationship: part_of UBERON:0004312
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004312 ! distal phalanx of hand digit 3
[Term]
id: UBERON:0004434
name: proximal epiphysis of distal phalanx of ring finger
def: "A proximal epiphysis that is part of a distal phalanx of hand digit 4 [Obol]." [OBOL:automatic]
xref: FMA:37529
is_a: UBERON:0004420 ! implied link automatically realized ! proximal epiphysis of phalanx of ring finger
relationship: part_of UBERON:0004313
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004313 ! distal phalanx of hand digit 4
[Term]
id: UBERON:0004435
name: proximal epiphysis of distal phalanx of little finger
def: "A proximal epiphysis that is part of a distal phalanx of hand digit 5 [Obol]." [OBOL:automatic]
xref: FMA:37541
is_a: UBERON:0004421 ! implied link automatically realized ! proximal epiphysis of phalanx of little finger
relationship: part_of UBERON:0004314
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004314 ! distal phalanx of hand digit 5
[Term]
id: UBERON:0004436
name: proximal epiphysis of middle phalanx of index finger
def: "A proximal epiphysis that is part of a middle phalanx of hand digit 2 [Obol]." [OBOL:automatic]
xref: FMA:37502
is_a: UBERON:0004418 ! implied link automatically realized ! proximal epiphysis of phalanx of index finger
relationship: part_of UBERON:0004320
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004320 ! middle phalanx of hand digit 2
[Term]
id: UBERON:0004437
name: proximal epiphysis of middle phalanx of middle finger
def: "A proximal epiphysis that is part of a middle phalanx of hand digit 3 [Obol]." [OBOL:automatic]
xref: FMA:37514
is_a: UBERON:0004419 ! implied link automatically realized ! proximal epiphysis of phalanx of middle finger
relationship: part_of UBERON:0004321
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004321 ! middle phalanx of hand digit 3
[Term]
id: UBERON:0004438
name: proximal epiphysis of middle phalanx of ring finger
def: "A proximal epiphysis that is part of a middle phalanx of hand digit 4 [Obol]." [OBOL:automatic]
xref: FMA:37526
is_a: UBERON:0004420 ! implied link automatically realized ! proximal epiphysis of phalanx of ring finger
relationship: part_of UBERON:0004322
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004322 ! middle phalanx of hand digit 4
[Term]
id: UBERON:0004439
name: proximal epiphysis of middle phalanx of little finger
def: "A proximal epiphysis that is part of a middle phalanx of hand digit 5 [Obol]." [OBOL:automatic]
xref: FMA:37538
is_a: UBERON:0004421 ! implied link automatically realized ! proximal epiphysis of phalanx of little finger
relationship: part_of UBERON:0004323
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004323 ! middle phalanx of hand digit 5
[Term]
id: UBERON:0004440
name: proximal epiphysis of proximal phalanx of index finger
def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 2 [Obol]." [OBOL:automatic]
xref: FMA:37499
is_a: UBERON:0004418 ! implied link automatically realized ! proximal epiphysis of phalanx of index finger
relationship: part_of UBERON:0004328
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004328 ! proximal phalanx of hand digit 2
[Term]
id: UBERON:0004441
name: proximal epiphysis of proximal phalanx of middle finger
def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 3 [Obol]." [OBOL:automatic]
xref: FMA:37511
is_a: UBERON:0004419 ! implied link automatically realized ! proximal epiphysis of phalanx of middle finger
relationship: part_of UBERON:0004329
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004329 ! proximal phalanx of hand digit 3
[Term]
id: UBERON:0004442
name: proximal epiphysis of proximal phalanx of ring finger
def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 4 [Obol]." [OBOL:automatic]
xref: FMA:37523
is_a: UBERON:0004420 ! implied link automatically realized ! proximal epiphysis of phalanx of ring finger
relationship: part_of UBERON:0004330
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004330 ! proximal phalanx of hand digit 4
[Term]
id: UBERON:0004443
name: proximal epiphysis of proximal phalanx of little finger
def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 5 [Obol]." [OBOL:automatic]
xref: FMA:37535
is_a: UBERON:0004421 ! implied link automatically realized ! proximal epiphysis of phalanx of little finger
relationship: part_of UBERON:0004331
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004331 ! proximal phalanx of hand digit 5
[Term]
id: UBERON:0004444
name: proximal epiphysis of distal phalanx of thumb
def: "A proximal epiphysis that is part of a distal phalanx of hand digit 1 [Obol]." [OBOL:automatic]
xref: FMA:37493
is_a: UBERON:0004417 ! implied link automatically realized ! proximal epiphysis of phalanx of thumb
relationship: part_of UBERON:0004337
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004337 ! distal phalanx of hand digit 1
[Term]
id: UBERON:0004445
name: proximal epiphysis of proximal phalanx of thumb
def: "A proximal epiphysis that is part of a proximal phalanx of hand digit 1 [Obol]." [OBOL:automatic]
xref: FMA:37490
is_a: UBERON:0004417 ! implied link automatically realized ! proximal epiphysis of phalanx of thumb
relationship: part_of UBERON:0004338
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0004338 ! proximal phalanx of hand digit 1
[Term]
id: UBERON:0004446
name: epiphysis of phalanx
def: "An epiphysis that is part of a phalanx [Obol]." [OBOL:automatic]
is_a: UBERON:0001437 ! implied link automatically realized ! epiphysis
relationship: part_of UBERON:0003221
intersection_of: UBERON:0001437 ! epiphysis
intersection_of: part_of UBERON:0003221 ! phalanx
[Term]
id: UBERON:0004447
name: proximal epiphysis of phalanx
def: "A proximal epiphysis that is part of a phalanx [Obol]." [OBOL:automatic]
is_a: UBERON:0004380 ! implied link automatically realized ! proximal epiphysis
is_a: UBERON:0004446 ! implied link automatically realized ! epiphysis of phalanx
relationship: part_of UBERON:0003221
intersection_of: UBERON:0004380 ! proximal epiphysis
intersection_of: part_of UBERON:0003221 ! phalanx
[Term]
id: UBERON:0004448
name: distal epiphysis of phalanx
def: "A distal epiphysis that is part of a phalanx [Obol]." [OBOL:automatic]
is_a: UBERON:0004379 ! implied link automatically realized ! distal epiphysis
is_a: UBERON:0004446 ! implied link automatically realized ! epiphysis of phalanx
relationship: part_of UBERON:0003221
intersection_of: UBERON:0004379 ! distal epiphysis
intersection_of: part_of UBERON:0003221 ! phalanx
[Term]
id: UBERON:0004449
name: cerebral artery
def: "One of three main pairs of arteries and their branches, which irrigate the cerebrum of the brain." [Wikipedia:Cerebral_artery]
xref: EHDAA2:0000233
xref: GAID:484
xref: MA:0002562
xref: ncithesaurus:Cerebral_Artery
xref: XAO:0000367
is_a: UBERON:0001637 ! artery
relationship: continuous_with UBERON:0001532 ! internal carotid artery
relationship: part_of UBERON:0003709 ! circle of Willis
[Term]
id: UBERON:0004450
name: gastric vein
xref: MA:0002128
xref: ncithesaurus:Gastric_Vein
xref: XAO:0000389
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0004451
name: presacral vertebra
xref: MA:0002869
xref: XAO:0003077
is_a: UBERON:0002412 ! vertebra
relationship: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0004452
name: carpus
def: "In tetrapods, the carpals is the sole cluster of the bones in the wrist between the radius and ulna and the metacarpus. The bones of the carpus do not belong to individual fingers (or toes in quadrupeds), whereas those of the metacarpus do. The corresponding part of the foot is the tarsus. The carpal bones allow the wrist to move and rotate vertically, horizontally and laterally. In human anatomy, the main role of the carpus is to facilitate effective positioning of the hand and powerful use of the extensors and flexors of the forearm, but the mobility of individual carpal bones increase the freedom of movements at the wrist. [WP,unvetted]." [Wikipedia:Carpus]
xref: HOG:0001161
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/58/Carpus.svg/200px-Carpus.svg.png
xref: MA:0000040
xref: XAO:0003207
is_a: UBERON:0001442 ! skeleton of hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0004453
name: metacarpus
def: "The metacarpus is the intermediate part of the hand skeleton that is located between the phalanges (bones of the fingers) distally and the carpus which forms the connection to the forearm. The metacarpus consists of metacarpal bones. The metacarpals form a transverse arch to which the rigid row of distal carpal bones are fixed. The peripheral metacarpals (those of the thumb and little finger) form the sides of the cup of the palmar gutter and as they are brought together they deepen this concavity. The index metacarpal is the most firmly fixed, while the thumb metacarpal articulates with the trapezium and acts independently from the others. The middle metacarpals are tightly united to the carpus by intrinsic interlocking bone elements at their bases. The ring metacarpal forms a transitional element of the semi-independent last metacarpal. [WP,unvetted]." [Wikipedia:Metacarpus]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2f/Metacarpals_numbered-en.svg/200px-Metacarpals_numbered-en.svg.png
xref: MA:0000042
xref: XAO:0003208
is_a: UBERON:0001442 ! skeleton of hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0004454
name: tarsus
def: "the cluster of bones in the foot between the tibia and fibula and the metatarsus. The bones of the tarsus do not belong to individual toes, whereas those of the metatarsus do. The joint between the tibia and fibula and the tarsus is referred to as the ankle joint[WP]." [Wikipedia:Tarsus_(skeleton)]
xref: GAID:1223
xref: HOG:0001160
xref: MA:0000050
xref: XAO:0003211
is_a: UBERON:0001445 ! skeleton of foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0004455
name: neurula
def: "An embryo at the neurula stage." [GOC:cjm]
xref: BTO:0001766
xref: ncithesaurus:Neurula
is_a: UBERON:0000922 ! implied link automatically realized ! embryo
relationship: existence_starts_and_ends_during UBERON:0000110
intersection_of: UBERON:0000922 ! embryo
intersection_of: existence_starts_and_ends_during UBERON:0000110 ! neurula stage
[Term]
id: UBERON:0004456
name: entire sense organ system
def: "Sum of all sensory systems in an organism." []
comment: note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs
subset: uberon_slim
xref: FMA:78499
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeletal system
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
relationship: overlaps UBERON:0001016 ! nervous system
[Term]
id: UBERON:0004457
name: cavity lining
xref: MA:0002448
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004458 ! implied link automatically realized ! body cavity or lining
[Term]
id: UBERON:0004458
name: body cavity or lining
xref: MA:0000005
is_a: UBERON:0001062 ! anatomical entity
union_of: UBERON:0002323 ! body cavity
union_of: UBERON:0004457 ! cavity lining
[Term]
id: UBERON:0004461
name: musculature of head
def: "A musculature that is part of a head [Obol]." [OBOL:automatic]
xref: FMA:71287
is_a: UBERON:0001015 ! implied link automatically realized ! musculature
relationship: part_of UBERON:0000033
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0004462
name: musculature of body wall
def: "A musculature that is part of a body wall [Obol]." [OBOL:automatic]
xref: FMA:86931
is_a: UBERON:0004479 ! implied link automatically realized ! musculature of trunk
relationship: part_of UBERON:0000309
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000309 ! body wall
[Term]
id: UBERON:0004463
name: musculature of thigh
def: "A musculature that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
xref: FMA:50208
is_a: UBERON:0004482 ! implied link automatically realized ! musculature of lower limb
relationship: part_of UBERON:0000376
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0004464
name: musculature of thorax
def: "A musculature that is part of a thorax [Obol]." [OBOL:automatic]
xref: FMA:71293
is_a: UBERON:0001015 ! implied link automatically realized ! musculature
relationship: part_of UBERON:0000915
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0004465
name: musculature of neck
def: "A musculature that is part of a neck [Obol]." [OBOL:automatic]
xref: FMA:71290
is_a: UBERON:0001015 ! implied link automatically realized ! musculature
relationship: part_of UBERON:0000974
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0004466
name: musculature of leg
alt_id: UBERON:0005632
def: "A musculature that is part of a leg [Obol]." [OBOL:automatic]
xref: EHDAA2:0000973
xref: FMA:50211
is_a: UBERON:0004482 ! implied link automatically realized ! musculature of lower limb
relationship: part_of UBERON:0000978
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0004467
name: musculature of pharynx
def: "A musculature that is part of a pharynx [Obol]." [OBOL:automatic]
xref: FMA:264609
is_a: UBERON:0001015 ! implied link automatically realized ! musculature
relationship: part_of UBERON:0001042
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0004468
name: set of muscles of vertebral column
def: "A musculature that is part of a vertebral column [Obol]." [OBOL:automatic]
xref: FMA:33061
is_a: UBERON:0004469 ! implied link automatically realized ! musculature of back
relationship: part_of UBERON:0001130
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0004469
name: musculature of back
def: "A musculature that is part of a back [Obol]." [OBOL:automatic]
xref: FMA:71291
is_a: UBERON:0004479 ! implied link automatically realized ! musculature of trunk
relationship: part_of UBERON:0001137
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001137 ! back
[Term]
id: UBERON:0004470
name: musculature of pelvic girdle
alt_id: UBERON:0005633
def: "A musculature that is part of a pelvic girdle [Obol]." [OBOL:automatic]
synonym: "pelvic girdle muscle system" EXACT [EHDAA2:0001429]
xref: EHDAA2:0001429
xref: FMA:50205
is_a: UBERON:0004482 ! implied link automatically realized ! musculature of lower limb
relationship: part_of UBERON:0001271
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001271 ! pelvic girdle
[Term]
id: UBERON:0004471
name: musculature of pectoral girdle
def: "A musculature that is part of a pectoral girdle [Obol]." [OBOL:automatic]
xref: FMA:33519
is_a: UBERON:0004472 ! implied link automatically realized ! musculature of chest
is_a: UBERON:0004481 ! implied link automatically realized ! musculature of upper limb
relationship: part_of UBERON:0001421
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001421 ! pectoral girdle
[Term]
id: UBERON:0004472
name: musculature of chest
def: "A musculature that is part of a chest [Obol]." [OBOL:automatic]
xref: FMA:74779
is_a: UBERON:0004464 ! implied link automatically realized ! musculature of thorax
relationship: part_of UBERON:0001443
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0004473
name: musculature of face
def: "A musculature that is part of a face [Obol]." [OBOL:automatic]
xref: FMA:71288
is_a: UBERON:0004461 ! implied link automatically realized ! musculature of head
relationship: part_of UBERON:0001456
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0004474
name: musculature of arm
def: "A musculature that is part of an arm [Obol]." [OBOL:automatic]
xref: FMA:50202
is_a: UBERON:0004481 ! implied link automatically realized ! musculature of upper limb
relationship: part_of UBERON:0001460
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0004475
name: musculature of hip
def: "A musculature that is part of a hip [Obol]." [OBOL:automatic]
xref: FMA:50227
is_a: UBERON:0004470 ! implied link automatically realized ! musculature of pelvic girdle
relationship: part_of UBERON:0001464
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0004476
name: musculature of shoulder
def: "A musculature that is part of a shoulder [Obol]." [OBOL:automatic]
xref: FMA:50220
is_a: UBERON:0004471 ! implied link automatically realized ! musculature of pectoral girdle
relationship: part_of UBERON:0001467
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0004477
name: Set of muscles of tongue
def: "A musculature that is part of a tongue [Obol]." [OBOL:automatic]
xref: FMA:71289
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004461 ! implied link automatically realized ! musculature of head
relationship: part_of UBERON:0001723
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0004478
name: musculature of larynx
def: "A musculature that is part of a larynx [Obol]." [OBOL:automatic]
xref: FMA:264611
xref: FMA:46616
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001015 ! implied link automatically realized ! musculature
relationship: part_of UBERON:0001737
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0004479
name: musculature of trunk
def: "A musculature that is part of a trunk [Obol]." [OBOL:automatic]
xref: FMA:50187
is_a: UBERON:0001015 ! implied link automatically realized ! musculature
relationship: part_of UBERON:0002100
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0004480
name: musculature of limb
alt_id: UBERON:0005635
def: "A musculature that is part of a limb [Obol]." [OBOL:automatic]
synonym: "limb muscle system" EXACT [EHDAA2:0000995]
xref: EHDAA2:0000995
xref: FMA:50188
is_a: UBERON:0001015 ! implied link automatically realized ! musculature
relationship: part_of UBERON:0002101
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0004481
name: musculature of upper limb
def: "A musculature that is part of a forelimb [Obol]." [OBOL:automatic]
xref: FMA:71296
is_a: UBERON:0004480 ! implied link automatically realized ! musculature of limb
relationship: part_of UBERON:0002102
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0004482
name: musculature of lower limb
def: "A musculature that is part of a hindlimb [Obol]." [OBOL:automatic]
xref: FMA:71297
is_a: UBERON:0004480 ! implied link automatically realized ! musculature of limb
relationship: part_of UBERON:0002103
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0004483
name: Set of iliocostalis muscles
def: "A musculature that is part of a iliocostalis [Obol]." [OBOL:automatic]
xref: FMA:33062
is_a: UBERON:0001015 ! implied link automatically realized ! musculature
relationship: part_of UBERON:0002251
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002251 ! iliocostalis
[Term]
id: UBERON:0004484
name: Set of splenius muscles
def: "A musculature that is part of a splenius [Obol]." [OBOL:automatic]
xref: FMA:22596
is_a: UBERON:0001015 ! implied link automatically realized ! musculature
relationship: part_of UBERON:0002252
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002252 ! splenius
[Term]
id: UBERON:0004485
name: Set of muscles of pelvis
def: "A musculature that is part of a pelvis [Obol]." [OBOL:automatic]
xref: FMA:50248
is_a: UBERON:0004479 ! implied link automatically realized ! musculature of trunk
relationship: part_of UBERON:0002355
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0004486
name: musculature of perineum
def: "A musculature that is part of a perineum [Obol]." [OBOL:automatic]
xref: FMA:71295
is_a: UBERON:0004479 ! implied link automatically realized ! musculature of trunk
relationship: part_of UBERON:0002356
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002356 ! perineum
[Term]
id: UBERON:0004487
name: musculature of forearm
def: "A musculature that is part of a lower arm [Obol]." [OBOL:automatic]
xref: FMA:39089
is_a: UBERON:0004481 ! implied link automatically realized ! musculature of upper limb
relationship: part_of UBERON:0002386
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002386 ! forelimb zeugopod
[Term]
id: UBERON:0004488
name: musculature of foot
def: "A musculature that is part of a foot [Obol]." [OBOL:automatic]
xref: FMA:50214
is_a: UBERON:0004482 ! implied link automatically realized ! musculature of lower limb
relationship: part_of UBERON:0002387
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0004489
name: musculature of hand
def: "A musculature that is part of a hand [Obol]." [OBOL:automatic]
xref: FMA:42368
is_a: UBERON:0004481 ! implied link automatically realized ! musculature of upper limb
relationship: part_of UBERON:0002398
intersection_of: UBERON:0001015 ! musculature
intersection_of: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0004490
name: cardiac muscle tissue of atrium
def: "A portion of cardiac muscle tissue that is part of an atrium [Obol]." [OBOL:automatic]
xref: FMA:7283
is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue
relationship: part_of UBERON:0001050
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0001050 ! atrium
[Term]
id: UBERON:0004491
name: cardiac muscle tissue of interatrial septum
def: "A portion of cardiac muscle tissue that is part of a interatrial septum [Obol]." [OBOL:automatic]
xref: FMA:84083
is_a: UBERON:0004492 ! implied link automatically realized ! cardiac muscle tissue of cardiac septum
relationship: part_of UBERON:0002085
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002085 ! interatrial septum
[Term]
id: UBERON:0004492
name: cardiac muscle tissue of cardiac septum
def: "A portion of cardiac muscle tissue that is part of a cardiac septum [Obol]." [OBOL:automatic]
xref: FMA:226279
is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002099
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002099 ! cardiac septum
[Term]
id: UBERON:0004493
name: cardiac muscle tissue of myocardium
def: "A portion of cardiac muscle tissue that is part of a myocardium [Obol]." [OBOL:automatic]
xref: FMA:261726
is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue
relationship: part_of UBERON:0002349
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002349 ! myocardium
[Term]
id: UBERON:0004494
name: cardiac muscle tissue of papillary muscle
def: "A portion of cardiac muscle tissue that is part of a papillary muscle [Obol]." [OBOL:automatic]
xref: FMA:84425
is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue
relationship: part_of UBERON:0002494
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002494 ! papillary muscle
[Term]
id: UBERON:0004495
name: skeletal muscle tissue of diaphragm
def: "A portion of skeletal muscle tissue that is part of a diaphragm [Obol]." [OBOL:automatic]
xref: FMA:261898
is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk
is_a: UBERON:0004830 ! implied link automatically realized ! respiratory system skeletal muscle
relationship: part_of UBERON:0001103
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001103 ! diaphragm
[Term]
id: UBERON:0004496
name: skeletal muscle tissue of iliacus
def: "A portion of skeletal muscle tissue that is part of a iliacus [Obol]." [OBOL:automatic]
xref: FMA:261992
is_a: UBERON:0003271 ! implied link automatically realized ! skeletal muscle of pelvic girdle
is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk
relationship: part_of UBERON:0001369
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001369 ! iliacus
[Term]
id: UBERON:0004497
name: skeletal muscle tissue of gluteus maximus
def: "A portion of skeletal muscle tissue that is part of a gluteus maximus [Obol]." [OBOL:automatic]
xref: FMA:261980
is_a: UBERON:0003271 ! implied link automatically realized ! skeletal muscle of pelvic girdle
is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk
relationship: part_of UBERON:0001370
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001370 ! gluteus maximus
[Term]
id: UBERON:0004498
name: skeletal muscle tissue of quadriceps femoris
def: "A portion of skeletal muscle tissue that is part of a quadriceps femoris [Obol]." [OBOL:automatic]
xref: FMA:261998
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
relationship: part_of UBERON:0001377
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001377 ! quadriceps femoris
[Term]
id: UBERON:0004499
name: skeletal muscle tissue of tibialis anterior
def: "A portion of skeletal muscle tissue that is part of a tibialis anterior [Obol]." [OBOL:automatic]
xref: FMA:262004
is_a: UBERON:0003270 ! implied link automatically realized ! skeletal muscle of leg
relationship: part_of UBERON:0001385
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001385 ! tibialis anterior
[Term]
id: UBERON:0004500
name: skeletal muscle tissue of deltoid
def: "A portion of skeletal muscle tissue that is part of a deltoid [Obol]." [OBOL:automatic]
xref: FMA:261732
is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk
relationship: part_of UBERON:0001476
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001476 ! deltoid
[Term]
id: UBERON:0004501
name: skeletal muscle tissue of teres major
def: "A portion of skeletal muscle tissue that is part of a teres major [Obol]." [OBOL:automatic]
xref: FMA:261962
is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk
relationship: part_of UBERON:0001478
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001478 ! teres major
[Term]
id: UBERON:0004502
name: skeletal muscle tissue of biceps brachii
def: "A portion of skeletal muscle tissue that is part of a biceps brachii [Obol]." [OBOL:automatic]
xref: FMA:261974
is_a: UBERON:0003272 ! implied link automatically realized ! skeletal muscle of arm
relationship: part_of UBERON:0001507
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001507 ! biceps brachii
[Term]
id: UBERON:0004503
name: skeletal muscle tissue of digastric
def: "A portion of skeletal muscle tissue that is part of a digastric [Obol]." [OBOL:automatic]
xref: FMA:261872
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
relationship: part_of UBERON:0001562
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001562 ! digastric
[Term]
id: UBERON:0004504
name: skeletal muscle tissue of mylohyoid
def: "A portion of skeletal muscle tissue that is part of a mylohyoid [Obol]." [OBOL:automatic]
xref: FMA:261878
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
relationship: part_of UBERON:0001564
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001564 ! mylohyoid
[Term]
id: UBERON:0004505
name: skeletal muscle tissue of orbicularis oculi
def: "A portion of skeletal muscle tissue that is part of a orbicularis oculi [Obol]." [OBOL:automatic]
xref: FMA:261812
is_a: UBERON:0003269 ! implied link automatically realized ! skeletal muscle of eye
is_a: UBERON:0003899 ! implied link automatically realized ! skeletal muscle of head
relationship: part_of UBERON:0001578
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001578 ! orbicularis oculi
[Term]
id: UBERON:0004506
name: skeletal muscle tissue of masseter
def: "A portion of skeletal muscle tissue that is part of a masseter [Obol]." [OBOL:automatic]
xref: FMA:261824
is_a: UBERON:0003899 ! implied link automatically realized ! skeletal muscle of head
relationship: part_of UBERON:0001597
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001597 ! masseter
[Term]
id: UBERON:0004507
name: skeletal muscle tissue of temporalis
def: "A portion of skeletal muscle tissue that is part of a temporalis [Obol]." [OBOL:automatic]
xref: FMA:261740
is_a: UBERON:0003899 ! implied link automatically realized ! skeletal muscle of head
relationship: part_of UBERON:0001598
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001598 ! temporalis
[Term]
id: UBERON:0004508
name: skeletal muscle tissue of levator palpebrae superioris
def: "A portion of skeletal muscle tissue that is part of a levator palpebrae superioris [Obol]." [OBOL:automatic]
xref: FMA:261782
is_a: UBERON:0003269 ! implied link automatically realized ! skeletal muscle of eye
is_a: UBERON:0003899 ! implied link automatically realized ! skeletal muscle of head
relationship: part_of UBERON:0001604
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001604 ! levator palpebrae superioris
[Term]
id: UBERON:0004509
name: skeletal muscle tissue of trapezius
def: "A portion of skeletal muscle tissue that is part of a trapezius [Obol]." [OBOL:automatic]
xref: FMA:261938
is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk
relationship: part_of UBERON:0002380
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002380 ! trapezius
[Term]
id: UBERON:0004510
name: skeletal muscle tissue of pectoralis major
def: "A portion of skeletal muscle tissue that is part of a pectoralis major [Obol]." [OBOL:automatic]
xref: FMA:261968
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
relationship: part_of UBERON:0002381
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002381 ! pectoralis major
[Term]
id: UBERON:0004511
name: skeletal muscle tissue of rectus abdominis
def: "A portion of skeletal muscle tissue that is part of a rectus abdominis [Obol]." [OBOL:automatic]
xref: FMA:261924
is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk
relationship: part_of UBERON:0002382
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002382 ! rectus abdominis
[Term]
id: UBERON:0004512
name: skeletal muscle tissue of supraspinatus
def: "A portion of skeletal muscle tissue that is part of a supraspinatus [Obol]." [OBOL:automatic]
xref: FMA:261956
is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk
relationship: part_of UBERON:0002383
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002383 ! supraspinatus
[Term]
id: UBERON:0004513
name: skeletal muscle tissue of internal intercostal muscle
def: "A portion of skeletal muscle tissue that is part of a internal intercostal muscle [Obol]." [OBOL:automatic]
xref: FMA:261888
is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk
relationship: part_of UBERON:0002403
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002403 ! internal intercostal muscle
[Term]
id: UBERON:0004514
name: skeletal muscle tissue of transversus thoracis
def: "A portion of skeletal muscle tissue that is part of a transversus thoracis [Obol]." [OBOL:automatic]
xref: FMA:261892
is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk
relationship: part_of UBERON:0002404
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002404 ! transversus thoracis
[Term]
id: UBERON:0004515
name: smooth muscle tissue of bronchiole
def: "A portion of smooth muscle tissue that is part of a bronchiole [Obol]." [OBOL:automatic]
xref: FMA:261045
xref: FMA:261081
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004225 ! implied link automatically realized ! respiratory system smooth muscle
relationship: part_of UBERON:0002186
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002186 ! bronchiole
[Term]
id: UBERON:0004516
name: smooth muscle tissue of terminal bronchiole
def: "A portion of smooth muscle tissue that is part of a terminal bronchiole [Obol]." [OBOL:automatic]
xref: FMA:261051
is_a: UBERON:0004515 ! implied link automatically realized ! smooth muscle tissue of bronchiole
relationship: part_of UBERON:0002187
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002187 ! terminal bronchiole
[Term]
id: UBERON:0004517
name: smooth muscle tissue of respiratory bronchiole
def: "A portion of smooth muscle tissue that is part of a respiratory bronchiole [Obol]." [OBOL:automatic]
xref: FMA:261055
is_a: UBERON:0004515 ! implied link automatically realized ! smooth muscle tissue of bronchiole
relationship: part_of UBERON:0002188
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002188 ! respiratory bronchiole
[Term]
id: UBERON:0004518
name: muscle of vertebral column
def: "A muscle organ that is part of a vertebral column [Obol]." [OBOL:automatic]
xref: FMA:22594
is_a: UBERON:0002324 ! implied link automatically realized ! muscle of back
relationship: part_of UBERON:0001130
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0004519
name: muscle of anal triangle
def: "A muscle organ that is part of an anal region [Obol]." [OBOL:automatic]
xref: FMA:77304
is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ
relationship: part_of UBERON:0001353
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001353 ! anal region
[Term]
id: UBERON:0004520
name: striated muscle tissue of prostate
def: "A portion of striated muscle tissue that is part of a prostate gland [Obol]." [OBOL:automatic]
xref: FMA:45716
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002036 ! implied link automatically realized ! striated muscle tissue
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0002367
intersection_of: UBERON:0002036 ! striated muscle tissue
intersection_of: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0004521
name: vasculature of muscle organ
def: "A vasculature that is part of a muscle organ [Obol]." [OBOL:automatic]
xref: FMA:87123
is_a: UBERON:0004522 ! implied link automatically realized ! vasculature of musculoskeletal system
relationship: part_of UBERON:0001630
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0004522
name: vasculature of musculoskeletal system
def: "A vasculature that is part of a musculoskeletal system [Obol]." [OBOL:automatic]
xref: FMA:239607
is_a: UBERON:0002049 ! implied link automatically realized ! vasculature
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002204
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0004523
name: papillary muscle of right ventricle
def: "A papillary muscle that is part of a right ventricle [Obol]." [OBOL:automatic]
xref: FMA:7259
is_a: UBERON:0002494 ! implied link automatically realized ! papillary muscle
relationship: part_of UBERON:0002080
intersection_of: UBERON:0002494 ! papillary muscle
intersection_of: part_of UBERON:0002080 ! right ventricle
[Term]
id: UBERON:0004524
name: papillary muscle of left ventricle
def: "A papillary muscle that is part of a left ventricle [Obol]." [OBOL:automatic]
xref: FMA:9352
is_a: UBERON:0002494 ! implied link automatically realized ! papillary muscle
relationship: part_of UBERON:0002084
intersection_of: UBERON:0002494 ! papillary muscle
intersection_of: part_of UBERON:0002084 ! left ventricle
[Term]
id: UBERON:0004525
name: cardiac muscle tissue of trabecula carnea of right ventricle
def: "A portion of trabecula carnea cardiac muscle tissue that is part of a right ventricle [Obol]." [OBOL:automatic]
xref: FMA:84429
is_a: UBERON:0003381 ! implied link automatically realized ! cardiac muscle of right ventricle
is_a: UBERON:0003452 ! implied link automatically realized ! trabecula carnea cardiac muscle tissue
relationship: part_of UBERON:0002080
intersection_of: UBERON:0003452 ! trabecula carnea cardiac muscle tissue
intersection_of: part_of UBERON:0002080 ! right ventricle
[Term]
id: UBERON:0004526
name: cardiac muscle tissue of trabecula carnea of left ventricle
def: "A portion of trabecula carnea cardiac muscle tissue that is part of a left ventricle [Obol]." [OBOL:automatic]
xref: FMA:84430
is_a: UBERON:0003382 ! implied link automatically realized ! cardiac muscle of left ventricle
is_a: UBERON:0003452 ! implied link automatically realized ! trabecula carnea cardiac muscle tissue
relationship: part_of UBERON:0002084
intersection_of: UBERON:0003452 ! trabecula carnea cardiac muscle tissue
intersection_of: part_of UBERON:0002084 ! left ventricle
[Term]
id: UBERON:0004527
name: alveolar process of maxilla
alt_id: UBERON:0001696
def: "thickened ridge of bone that contains the tooth sockets on bones that bear teeth. In humans, the tooth-bearing bones are the maxilla and the mandible. The mineral content of alveolar bone is mostly hydroxyapatite, which is also found in enamel as the main inorganic substance.." [Wikipedia:Alveolar_process_of_maxilla]
synonym: "alveolar margin of maxilla" EXACT []
synonym: "alveolar part of maxilla" EXACT []
synonym: "alveolar ridge of maxilla" EXACT []
synonym: "lower alveolar ridge" EXACT []
synonym: "maxilla alveolar process" EXACT []
synonym: "posterior alveolar ridge" EXACT []
synonym: "processus alveolaris (maxilla)" EXACT []
xref: FMA:52897
xref: MA:0001492
is_a: UBERON:0004103 ! implied link automatically realized ! alveolar ridge
relationship: part_of UBERON:0002397
intersection_of: UBERON:0004103 ! alveolar ridge
intersection_of: part_of UBERON:0002397 ! maxilla
[Term]
id: UBERON:0004528
name: alveolar ridge of mandible
def: "The alveolar part of mandible is the part of the mandible, adjacent to the teeth, containing the dental alveolus. [WP,unvetted]." [Wikipedia:Alveolar_part_of_mandible]
synonym: "alveolar margin of mandible" EXACT []
synonym: "alveolar part of mandible" EXACT []
synonym: "anterior alveolar ridge" EXACT []
synonym: "upper alveolar ridge" EXACT []
xref: FMA:52832
is_a: UBERON:0004103 ! implied link automatically realized ! alveolar ridge
relationship: part_of UBERON:0001684
intersection_of: UBERON:0004103 ! alveolar ridge
intersection_of: part_of UBERON:0001684 ! mandible
[Term]
id: UBERON:0004529
name: anatomical projection
def: "a projection or outgrowth of tissue from a larger body or organ." [Wikipedia:Process_(anatomy)]
synonym: "anatomical process" BROAD []
synonym: "organ process" NARROW []
synonym: "process" BROAD []
synonym: "process of organ" NARROW []
synonym: "projection" EXACT []
xref: FMA:67601
xref: HAO:0000822
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0004530
name: bony projection
def: "Portion of connective tissue that is an extension of a bone." []
synonym: "bone process" BROAD []
synonym: "projection of bone" EXACT []
xref: FMA:75433
xref: ZFA:0001637
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004529 ! implied link automatically realized ! anatomical projection
relationship: part_of UBERON:0001474
intersection_of: UBERON:0004529 ! anatomical projection
intersection_of: part_of UBERON:0001474 ! bone
relationship: has_part UBERON:0002481 ! bone tissue
[Term]
id: UBERON:0004531
name: left side of organism
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0004532
name: right side of organism
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0004533
name: left testicle
def: "A testis that is part of a left side of organism [Obol]." [OBOL:automatic]
xref: FMA:7212
xref: MA:0001746
xref: ncithesaurus:Left_Testis
is_a: UBERON:0000473 ! implied link automatically realized ! testis
relationship: part_of UBERON:0004531
intersection_of: UBERON:0000473 ! testis
intersection_of: part_of UBERON:0004531 ! left side of organism
[Term]
id: UBERON:0004534
name: right testicle
def: "A testis that is part of a right side of organism [Obol]." [OBOL:automatic]
xref: FMA:7211
xref: MA:0001747
xref: ncithesaurus:Right_Testis
xref: OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA
is_a: UBERON:0000473 ! implied link automatically realized ! testis
relationship: part_of UBERON:0004532
intersection_of: UBERON:0000473 ! testis
intersection_of: part_of UBERON:0004532 ! right side of organism
[Term]
id: UBERON:0004535
name: cardiovascular system
def: "Anatomical system that has as its parts the heart and blood vessels." [BTO:0000088]
subset: uberon_slim
xref: BILA:0000016
xref: BTO:0000088
xref: EFO:0000791
xref: EHDAA:394
xref: EHDAA2:0000216
xref: FMA:7161
xref: GAID:467
xref: HOG:0000302
xref: MA:0000010
xref: MAT:0000016
xref: MIAA:0000016
xref: ncithesaurus:Cardiovascular_System
xref: OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA
xref: TAO:0000010
xref: XAO:0000100
xref: XAO:0001010
xref: ZFA:0000010
is_a: UBERON:0000467 ! anatomical system
relationship: has_part UBERON:0000948 ! heart
relationship: has_part UBERON:0001981 ! blood vessel
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0004536
name: lymph vasculature
def: "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [ZFA:0005105]
synonym: "lymphatic vasculature" EXACT []
synonym: "lymphatic vessel network" EXACT []
synonym: "set of lymphatic vessels" EXACT []
xref: FMA:63815
xref: ZFA:0005105
is_a: UBERON:0002049 ! implied link automatically realized ! vasculature
relationship: has_part UBERON:0002391
intersection_of: UBERON:0002049 ! vasculature
intersection_of: has_part UBERON:0002391 ! lymph
relationship: part_of UBERON:0002465 ! lymphoid system
[Term]
id: UBERON:0004537
name: blood vasculature
def: "a vascular network consisting of blood vessels" [UBERON:cjm]
synonym: "blood vascular network" EXACT []
synonym: "set of blood vessels" EXACT []
xref: ZFA:0001079
is_a: UBERON:0002049 ! implied link automatically realized ! vasculature
relationship: has_part UBERON:0000178
intersection_of: UBERON:0002049 ! vasculature
intersection_of: has_part UBERON:0000178 ! blood
relationship: part_of UBERON:0004535 ! cardiovascular system
[Term]
id: UBERON:0004538
name: left kidney
def: "A kidney that is part of a left side of organism [Obol]." [OBOL:automatic]
xref: FMA:7205
xref: MA:0001655
is_a: UBERON:0002113 ! implied link automatically realized ! kidney
relationship: part_of UBERON:0004531
intersection_of: UBERON:0002113 ! kidney
intersection_of: part_of UBERON:0004531 ! left side of organism
[Term]
id: UBERON:0004539
name: right kidney
def: "A kidney that is part of a right side of organism [Obol]." [OBOL:automatic]
xref: FMA:7204
xref: MA:0001683
is_a: UBERON:0002113 ! implied link automatically realized ! kidney
relationship: part_of UBERON:0004532
intersection_of: UBERON:0002113 ! kidney
intersection_of: part_of UBERON:0004532 ! right side of organism
[Term]
id: UBERON:0004540
name: proper plantar digital artery
def: "The proper palmar digital arteries travel along the sides of the phalanges (along the contiguous sides of the index, middle, ring, and little fingers), each artery lying just below (dorsal to) its corresponding digital nerve." [Wikipedia:Proper_palmar_digital_arteries]
comment: the MA term, even though plural, represents the singular, as it is an isa child of artery
synonym: "plantar digital artery proper" EXACT []
xref: FMA:43971
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a9/Gray1237.svg/200px-Gray1237.svg.png
xref: MA:0001968
is_a: UBERON:0004554 ! hindlimb digital artery
[Term]
id: UBERON:0004544
name: epididymis epithelium
def: "A simple columnar epithelium that is part of a epididymis [Obol]." [OBOL:automatic]
synonym: "Epididymis epithelium" EXACT [FMA:19153]
xref: FMA:19153
xref: MA:0002825
is_a: UBERON:0000485 ! implied link automatically realized ! simple columnar epithelium
is_a: UBERON:0004910 ! implied link automatically realized ! epithelium of testis
relationship: part_of UBERON:0001301
intersection_of: UBERON:0000485 ! simple columnar epithelium
intersection_of: part_of UBERON:0001301 ! epididymis
[Term]
id: UBERON:0004545
name: external capsule
def: "External capsule is an organ subdivision of the telencephalon which is made up primarily of myelinated axonal neural tissue (white matter). The external capsule is a sheet-like fiber bundle located lateral to the to the putamen and globus pallidus which projects dorsally to the white matter underlying the cerebral cortex[FMA]." [FMA:61959, Wikipedia:External_capsule]
xref: FMA:61959
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Telencephalon-Horiconatal.jpg/200px-Telencephalon-Horiconatal.jpg
xref: MA:0002896
is_a: UBERON:0002437 ! cerebral white matter
[Term]
id: UBERON:0004546
name: cribriform plate
def: "The cribriform plate of the ethmoid bone (horizontal lamina) is received into the ethmoidal notch of the frontal bone and roofs in the nasal cavities. Projecting upward from the middle line of this plate is a thick, smooth, triangular process, the crista galli, so called from its resemblance to a cock's comb. The long thin posterior border of the crista galli serves for the attachment of the falx cerebri. Its anterior border, short and thick, articulates with the frontal bone, and presents two small projecting alæ, which are received into corresponding depressions in the frontal bone and complete the foramen cecum. Its sides are smooth, and sometimes bulging from the presence of a small air sinus in the interior. On either side of the crista galli, the cribriform plate is narrow and deeply grooved; it supports the olfactory bulb and is perforated by foramina for the passage of the olfactory nerves. The foramina in the middle of the groove are small and transmit the nerves to the roof of the nasal cavity; those at the medial and lateral parts of the groove are larger—the former transmit the nerves to the upper part of the nasal septum, the latter those to the superior nasal concha. At the front part of the cribriform plate, on either side of the crista galli, is a small fissure which is occupied by a process of dura mater. Lateral to this fissure is a notch or foramen which transmits the nasociliary nerve; from this notch a groove extends backward to the anterior ethmoidal foramen. [WP,unvetted]." [Wikipedia:Cribriform_plate]
xref: FMA:52890
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/93/Gray149.png/200px-Gray149.png
xref: MA:0002898
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001679 ! ethmoid
[Term]
id: UBERON:0004547
name: decidua capsularis
xref: FMA:86478
xref: MA:0002906
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0002450 ! decidua
[Term]
id: UBERON:0004548
name: left eye
def: "An eye that is part of a left side of organism [Obol]." [OBOL:automatic]
synonym: "Left orbital part of face" NARROW [FMA:54450]
synonym: "Left orbital region" NARROW [FMA:54450]
xref: FMA:54450
xref: MA:0002949
is_a: UBERON:0000970 ! implied link automatically realized ! eye
relationship: part_of UBERON:0004531
intersection_of: UBERON:0000970 ! eye
intersection_of: part_of UBERON:0004531 ! left side of organism
[Term]
id: UBERON:0004549
name: right eye
def: "An eye that is part of a right side of organism [Obol]." [OBOL:automatic]
synonym: "Right orbital part of face" NARROW [FMA:54449]
synonym: "Right orbital region" NARROW [FMA:54449]
xref: FMA:54449
xref: MA:0002950
is_a: UBERON:0000970 ! implied link automatically realized ! eye
relationship: part_of UBERON:0004532
intersection_of: UBERON:0000970 ! eye
intersection_of: part_of UBERON:0004532 ! right side of organism
[Term]
id: UBERON:0004550
name: gastroesophageal sphincter
def: "A sphincter muscle that is part of a cardia of stomach [Obol]." [OBOL:automatic]
synonym: "cardiac sphincter" RELATED [MA:0002951]
synonym: "Gastroesophageal sphincter" EXACT [FMA:14915]
synonym: "Inferior esophageal sphincter" EXACT [FMA:14915]
synonym: "lower esophageal sphincter" RELATED [MA:0002951]
xref: FMA:14915
xref: MA:0002951
is_a: UBERON:0004590 ! implied link automatically realized ! sphincter muscle
relationship: part_of UBERON:0001162
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0001162 ! cardia of stomach
[Term]
id: UBERON:0004551
name: set of proper plantar digital arteries
synonym: "plantar digital arteries proper" EXACT [FMA:71564]
synonym: "plantar digital arteries proper set" EXACT [FMA:71564]
xref: FMA:43971
xref: FMA:71564
xref: MA:0001968
is_a: UBERON:0000480 ! anatomical group
[Term]
id: UBERON:0004552
name: digital artery
def: "An artery that is part of a digit [Obol]." [OBOL:automatic]
comment: check part_of - do we need term for digit + metacarpal/tarsal bones?
xref: MA:0001941
is_a: UBERON:0001637 ! implied link automatically realized ! artery
is_a: UBERON:0003514 ! implied link automatically realized ! limb blood vessel
relationship: part_of UBERON:0002544
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0002544 ! digit
[Term]
id: UBERON:0004553
name: forelimb digital artery
def: "A digital artery that is part of a forelimb [Obol]." [OBOL:automatic]
synonym: "palmar digital artery" EXACT []
xref: MA:0001953
is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel
is_a: UBERON:0004552 ! implied link automatically realized ! digital artery
relationship: part_of UBERON:0002102
intersection_of: UBERON:0004552 ! digital artery
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0004554
name: hindlimb digital artery
def: "A digital artery that is part of a hindlimb [Obol]." [OBOL:automatic]
synonym: "plantar digital artery" EXACT []
xref: MA:0001964
is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel
is_a: UBERON:0004552 ! implied link automatically realized ! digital artery
relationship: part_of UBERON:0002103
intersection_of: UBERON:0004552 ! digital artery
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0004561
name: proper palmar digital vein
alt_id: UBERON:FMA_22923-MA_0002121
comment: Some sources distinguish between the "proper palmar digital veins", which are more distal, and the "common palmar digital veins", which are more proximal.
synonym: "distal palmar digital vein" EXACT [Wikipedia:Palmar_digital_veins]
xref: FMA:22926
is_a: UBERON:0004563 ! forelimb digital vein
[Term]
id: UBERON:0004562
name: digital vein
comment: check part_of - do we need term for digit + metacarpal/tarsal bones?
xref: MA:0002101
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003514 ! implied link automatically realized ! limb blood vessel
relationship: part_of UBERON:0002470 ! autopod
[Term]
id: UBERON:0004563
name: forelimb digital vein
def: "The palmar digital veins (or volar digital veins) on each finger are connected to the dorsal digital veins by oblique intercapitular veins." [Wikipedia:Palmar_digital_veins]
synonym: "palmar digital vein" EXACT []
xref: FMA:44517
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/ba/Gray574.png/200px-Gray574.png
xref: MA:0002120
is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel
is_a: UBERON:0004562 ! implied link automatically realized ! digital vein
relationship: part_of UBERON:0002102
intersection_of: UBERON:0004562 ! digital vein
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0004564
name: hindlimb digital vein
def: "A digital vein that is part of a hindlimb [Obol]." [OBOL:automatic]
comment: see FMA:70919
synonym: "plantar digital vein" EXACT []
xref: MA:0002133
is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel
is_a: UBERON:0004562 ! implied link automatically realized ! digital vein
relationship: part_of UBERON:0002103
intersection_of: UBERON:0004562 ! digital vein
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0004571
name: systemic arterial system
synonym: "Systemic arterial circulatory system" EXACT [FMA:45623]
xref: EHDAA2:0000143
xref: FMA:45623
xref: HOG:0000273
is_a: UBERON:0002049 ! vasculature
relationship: part_of UBERON:0004572 ! arterial system
[Term]
id: UBERON:0004572
name: arterial system
xref: EHDAA2:0000143
xref: HOG:0000273
xref: MA:0002719
is_a: UBERON:0002049 ! vasculature
[Term]
id: UBERON:0004573
name: systemic artery
synonym: "Systemic arterial subtree" EXACT [FMA:66464]
xref: EHDAA2:0000143
xref: FMA:66464
xref: HOG:0000273
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0004571 ! systemic arterial system
[Term]
id: UBERON:0004581
name: systemic venous system
def: "Subdivision of cardiovascular system which has as its parts the right side of heart, the superior vena cava and the inferior vena cava[FMA] In human anatomy, the systemic venous system refers to veins that drain into the right atrium without passing through two vascular beds (i.e. they originate from a set of capillaries and do not pass through a second set of capillaries before reaching the right side of the heart). The term systemic venous system is often used to differentiate veins from veins that drain the pulmonary system (the pulmonary venous system) and veins that drain the digestive tract (the portal venous system). Large veins that are considered part of the systemic venous system are the: Superior vena cava; Inferior vena cava[WP]." [FMA:45626, Wikipedia:Systemic_venous_system]
synonym: "Systemic venous circulatory system" EXACT [FMA:45626]
xref: EHDAA2:0002171
xref: FMA:45626
xref: HOG:0000277
is_a: UBERON:0002049 ! vasculature
relationship: part_of UBERON:0004582 ! venous system
[Term]
id: UBERON:0004582
name: venous system
synonym: "vein system" EXACT []
xref: EHDAA2:0002171
xref: HOG:0000277
xref: MA:0002720
is_a: UBERON:0002049 ! vasculature
relationship: part_of UBERON:0004535 ! cardiovascular system
[Term]
id: UBERON:0004590
name: sphincter muscle
def: "a structure , usually a circular muscle, that normally maintains constriction of a natural body passage or orifice and which relaxes as required by normal physiological functioning." [Wikipedia:Sphincter]
comment: FMA class is not a subtype of muscle
synonym: "sphincter" EXACT []
xref: FMA:75004
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0004601
name: rib 1
def: "The first rib is the most curved and usually the shortest of all the ribs; it is broad and flat, its surfaces looking upward and downward, and its borders inward and outward. The head is small, rounded, and possesses only a single articular facet, for articulation with the body of the first thoracic vertebra. The neck is narrow and rounded. The tubercle, thick and prominent, is placed on the outer border. There is no angle, but at the tubercle the rib is slightly bent, with the convexity upward, so that the head of the bone is directed downward. The upper surface of the body is marked by two shallow grooves, separated from each other by a slight ridge prolonged internally into a tubercle, the scalene tubercle, for the attachment of the Scalenus anterior; the anterior groove transmits the subclavian vein, the posterior the subclavian artery and the lowest trunk of the brachial plexus. Behind the posterior groove is a rough area for the attachment of the Scalenus medius. The under surface is smooth, and destitute of a costal groove. The outer border is convex, thick, and rounded, and at its posterior part gives attachment to the first digitation of the Serratus anterior. The inner border is concave, thin, and sharp, and marked about its center by the scalene tubercle. The anterior extremity is larger and thicker than that of any of the other ribs. [WP,unvetted]." [Wikipedia:First_rib]
comment: elements are to be defined spatially/topologically
synonym: "Costa prima (I)" EXACT [FMA:7597]
xref: FMA:7597
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Gray124.png/200px-Gray124.png
xref: MA:0001401
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0004602
name: rib 2
def: "The second rib is much longer than the first, but has a very similar curvature. The non-articular portion of the tubercle is occasionally only feebly marked. The angle is slight, and situated close to the tubercle. The body is not twisted, so that both ends touch any plane surface upon which it may be laid; but there is a bend, with its convexity upward, similar to, though smaller than that found in the first rib. The body is not flattened horizontally like that of the first rib. Its external surface is convex, and looks upward and a little outward; near the middle of it is a rough eminence for the origin of the lower part of the first and the whole of the second digitation of the Serratus anterior; behind and above this is attached the Scalenus posterior. The internal surface, smooth, and concave, is directed downward and a little inward: on its posterior part there is a short costal groove. [WP,unvetted]." [Wikipedia:Second_rib]
comment: elements are to be defined spatially/topologically
synonym: "Costa secunda (II)" EXACT [FMA:7620]
xref: FMA:7620
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a5/Gray125.png/200px-Gray125.png
xref: MA:0001402
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0004603
name: rib 3
comment: elements are to be defined spatially/topologically
xref: FMA:7638
xref: MA:0001403
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0004604
name: rib 4
comment: elements are to be defined spatially/topologically
xref: FMA:7749
xref: MA:0001404
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0004605
name: rib 5
comment: elements are to be defined spatially/topologically
xref: FMA:7776
xref: MA:0001405
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0004606
name: rib 6
comment: elements are to be defined spatially/topologically
xref: FMA:8147
xref: MA:0001406
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0004607
name: rib 7
comment: elements are to be defined spatially/topologically
xref: FMA:7830
xref: MA:0001407
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0004608
name: rib 9
comment: elements are to be defined spatially/topologically
xref: FMA:8337
xref: MA:0001409
is_a: UBERON:0002228 ! rib
is_a: UBERON:0002238 ! false rib
[Term]
id: UBERON:0004609
name: rib 10
def: "The tenth rib has only a single articular facet on its head. [WP,unvetted]." [Wikipedia:Tenth_rib]
comment: elements are to be defined spatially/topologically
xref: FMA:8418
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/8d/Gray126.png/200px-Gray126.png
xref: MA:0001410
is_a: UBERON:0002228 ! rib
is_a: UBERON:0002238 ! false rib
[Term]
id: UBERON:0004610
name: rib 11
def: "The eleventh rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The eleventh has a slight angle and a shallow costal groove. [WP,unvetted]." [Wikipedia:Eleventh_rib]
comment: elements are to be defined spatially/topologically
xref: FMA:8499
xref: MA:0001411
is_a: UBERON:0002228 ! rib
is_a: UBERON:0002239 ! floating rib
[Term]
id: UBERON:0004611
name: rib 12
def: "The twelfth rib has a single articular facet on the head, which is of rather large size. It has no necks or tubercles, and is pointed at its anterior ends. The twelfth has angle nor costal groove; it is much shorter than the eleventh rib, and its head is inclined slightly downward. Sometimes the twelfth rib is even shorter than the first rib. [WP,unvetted]." [Wikipedia:Twelfth_rib]
comment: elements are to be defined spatially/topologically
xref: FMA:8515
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/fe/Gray128.png/200px-Gray128.png
xref: MA:0001412
is_a: UBERON:0002228 ! rib
is_a: UBERON:0002239 ! floating rib
[Term]
id: UBERON:0004612
name: cervical vertebra 3
comment: elements are to be defined spatially/topologically
synonym: "C3 vertebra" EXACT [FMA:12521]
xref: FMA:12521
xref: MA:0001423
is_a: UBERON:0002413 ! cervical vertebra
[Term]
id: UBERON:0004613
name: cervical vertebra 4
comment: elements are to be defined spatially/topologically
synonym: "C4 vertebra" EXACT [FMA:12522]
xref: FMA:12522
xref: MA:0001424
is_a: UBERON:0002413 ! cervical vertebra
[Term]
id: UBERON:0004614
name: cervical vertebra 5
comment: elements are to be defined spatially/topologically
synonym: "C5 vertebra" EXACT [FMA:12523]
xref: FMA:12523
xref: MA:0001425
is_a: UBERON:0002413 ! cervical vertebra
[Term]
id: UBERON:0004615
name: cervical vertebra 6
comment: elements are to be defined spatially/topologically
synonym: "C6 vertebra" EXACT [FMA:12524]
xref: FMA:12524
xref: MA:0001426
is_a: UBERON:0002413 ! cervical vertebra
[Term]
id: UBERON:0004616
name: cervical vertebra 7
comment: elements are to be defined spatially/topologically
synonym: "C7 vertebra" EXACT [FMA:12525]
synonym: "Prominent vertebra" EXACT [FMA:12525]
synonym: "Vertebra prominens (CVII)" EXACT [FMA:12525]
xref: FMA:12525
xref: MA:0001427
is_a: UBERON:0002413 ! cervical vertebra
[Term]
id: UBERON:0004617
name: lumbar vertebra 1
comment: elements are to be defined spatially/topologically
synonym: "L1 vertebra" EXACT [FMA:13072]
xref: FMA:13072
xref: MA:0001428
is_a: UBERON:0002414 ! lumbar vertebra
[Term]
id: UBERON:0004618
name: lumbar vertebra 2
comment: elements are to be defined spatially/topologically
synonym: "L2 vertebra" EXACT [FMA:13073]
xref: FMA:13073
xref: MA:0001429
is_a: UBERON:0002414 ! lumbar vertebra
[Term]
id: UBERON:0004619
name: lumbar vertebra 3
comment: elements are to be defined spatially/topologically
synonym: "L3 vertebra" EXACT [FMA:13074]
xref: FMA:13074
xref: MA:0001430
is_a: UBERON:0002414 ! lumbar vertebra
[Term]
id: UBERON:0004620
name: lumbar vertebra 4
comment: elements are to be defined spatially/topologically
synonym: "L4 vertebra" EXACT [FMA:13075]
xref: FMA:13075
xref: MA:0001431
is_a: UBERON:0002414 ! lumbar vertebra
[Term]
id: UBERON:0004621
name: lumbar vertebra 5
comment: elements are to be defined spatially/topologically
synonym: "L5 vertebra" EXACT [FMA:13076]
xref: FMA:13076
xref: MA:0001432
is_a: UBERON:0002414 ! lumbar vertebra
[Term]
id: UBERON:0004622
name: sacral vertebra 1
comment: elements are to be defined spatially/topologically
synonym: "First sacral segment" EXACT [FMA:13077]
synonym: "First segment of sacrum" EXACT [FMA:13077]
synonym: "S1 vertebra" EXACT [FMA:13077]
xref: FMA:13077
xref: MA:0001434
is_a: UBERON:0001094 ! sacral vertebra
[Term]
id: UBERON:0004623
name: sacral vertebra 2
comment: elements are to be defined spatially/topologically
synonym: "S2 vertebra" EXACT [FMA:13078]
synonym: "Second sacral segment" EXACT [FMA:13078]
synonym: "Second segment of sacrum" EXACT [FMA:13078]
xref: FMA:13078
xref: MA:0001435
is_a: UBERON:0001094 ! sacral vertebra
[Term]
id: UBERON:0004624
name: sacral vertebra 3
comment: elements are to be defined spatially/topologically
synonym: "S3 vertebra" EXACT [FMA:13079]
synonym: "Third sacral segment" EXACT [FMA:13079]
synonym: "Third segment of sacrum" EXACT [FMA:13079]
xref: FMA:13079
xref: MA:0001436
is_a: UBERON:0001094 ! sacral vertebra
[Term]
id: UBERON:0004625
name: sacral vertebra 4
comment: elements are to be defined spatially/topologically
synonym: "Fourth sacral segment" EXACT [FMA:13080]
synonym: "Fourth segment of sacrum" EXACT [FMA:13080]
synonym: "S4 vertebra" EXACT [FMA:13080]
xref: FMA:13080
xref: MA:0001437
is_a: UBERON:0001094 ! sacral vertebra
[Term]
id: UBERON:0004626
name: thoracic vertebra 1
comment: elements are to be defined spatially/topologically
synonym: "First dorsal vertebra" EXACT [FMA:9165]
synonym: "T1 vertebra" EXACT [FMA:9165]
xref: FMA:9165
xref: MA:0001438
is_a: UBERON:0002347 ! thoracic vertebra
[Term]
id: UBERON:0004627
name: thoracic vertebra 2
comment: elements are to be defined spatially/topologically
synonym: "Second dorsal vertebra" EXACT [FMA:9187]
synonym: "T2 vertebra" EXACT [FMA:9187]
xref: FMA:9187
xref: MA:0001439
is_a: UBERON:0002347 ! thoracic vertebra
[Term]
id: UBERON:0004628
name: thoracic vertebra 3
comment: elements are to be defined spatially/topologically
synonym: "T3 vertebra" EXACT [FMA:9209]
synonym: "Third dorsal vertebra" EXACT [FMA:9209]
xref: FMA:9209
xref: MA:0001440
is_a: UBERON:0002347 ! thoracic vertebra
[Term]
id: UBERON:0004629
name: thoracic vertebra 4
comment: elements are to be defined spatially/topologically
synonym: "Fourth dorsal vertebra" EXACT [FMA:9248]
synonym: "T4 vertebra" EXACT [FMA:9248]
xref: FMA:9248
xref: MA:0001441
is_a: UBERON:0002347 ! thoracic vertebra
[Term]
id: UBERON:0004630
name: thoracic vertebra 5
comment: elements are to be defined spatially/topologically
synonym: "Fifth dorsal vertebra" EXACT [FMA:9922]
synonym: "T5 vertebra" EXACT [FMA:9922]
xref: FMA:9922
xref: MA:0001442
is_a: UBERON:0002347 ! thoracic vertebra
[Term]
id: UBERON:0004631
name: thoracic vertebra 6
comment: elements are to be defined spatially/topologically
synonym: "Sixth dorsal vertebra" EXACT [FMA:9945]
synonym: "T6 vertebra" EXACT [FMA:9945]
xref: FMA:9945
xref: MA:0001443
is_a: UBERON:0002347 ! thoracic vertebra
[Term]
id: UBERON:0004632
name: thoracic vertebra 7
comment: elements are to be defined spatially/topologically
synonym: "Seventh dorsal vertebra" EXACT [FMA:9968]
synonym: "T7 vertebra" EXACT [FMA:9968]
xref: FMA:9968
xref: MA:0001444
is_a: UBERON:0002347 ! thoracic vertebra
[Term]
id: UBERON:0004633
name: thoracic vertebra 9
comment: elements are to be defined spatially/topologically
synonym: "Ninth dorsal vertebra" EXACT [FMA:10014]
synonym: "T9 vertebra" EXACT [FMA:10014]
xref: FMA:10014
xref: MA:0001446
is_a: UBERON:0002347 ! thoracic vertebra
[Term]
id: UBERON:0004634
name: thoracic vertebra 10
comment: elements are to be defined spatially/topologically
synonym: "T10 vertebra" EXACT [FMA:10037]
synonym: "Tenth dorsal vertebra" EXACT [FMA:10037]
xref: FMA:10037
xref: MA:0001447
is_a: UBERON:0002347 ! thoracic vertebra
[Term]
id: UBERON:0004635
name: thoracic vertebra 11
comment: elements are to be defined spatially/topologically
synonym: "Eleventh dorsal vertebra" EXACT [FMA:10059]
synonym: "T11 vertebra" EXACT [FMA:10059]
xref: FMA:10059
xref: MA:0001448
is_a: UBERON:0002347 ! thoracic vertebra
[Term]
id: UBERON:0004636
name: thoracic vertebra 12
comment: elements are to be defined spatially/topologically
synonym: "T12 vertebra" EXACT [FMA:10081]
synonym: "Twelfth dorsal vertebra" EXACT [FMA:10081]
xref: FMA:10081
xref: MA:0001449
is_a: UBERON:0002347 ! thoracic vertebra
[Term]
id: UBERON:0004637
name: otic capsule
def: "The cartilage capsule surrounding the inner ear mechanism; in elasmobranchs, it remains cartilaginous in the adult; in the embryos of higher vertebrates, it is cartilaginous at first but later becomes bony (at approximately 23 weeks in humans)[Biology-Online]. Bilaterally paired cartilage encasing the semicircular canals of the inner ear[ZFA]." [http://medical-dictionary.thefreedictionary.com/otic+capsule, http://www.biology-online.org/dictionary/Otic_capsule, ZFA:0001500]
comment: otic capsule goes to CS20 in EHDAA2, and until adult in ZFA
synonym: "otic capsule" EXACT [ZFA:0001500]
synonym: "periotic capsule" RELATED [MA:0000252]
xref: EHDAA2:0001333
xref: EMAPA:17596
xref: HOG:0000854
is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0004638
name: blood vessel endothelium
def: "An endothelium that is part of a blood vessel [Obol]." [OBOL:automatic]
xref: BTO:0000766
xref: MA:0000709
xref: ZFA:0005257
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004852 ! implied link automatically realized ! cardiovascular system endothelium
relationship: part_of UBERON:0001981
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0004639
name: afferent arteriole
def: "The afferent arterioles are a group of blood vessels that supply the nephrons in many excretory systems. They play an important role in the regulation of blood pressure. The afferent arterioles branch from the renal artery which supplies blood to the kidneys. The afferent arterioles later diverge into the capillaries of the glomerulus. When renal blood flow is reduced, the macula densa releases prostaglandins, which cause the juxtaglomerular cells lining the afferent arterioles to release renin, activating the renin-angiotensin-aldosterone system, to increase blood pressure. [WP,unvetted]." [Wikipedia:Afferent_arterioles]
xref: MA:0002579
xref: ZFA:0005307
is_a: UBERON:0001980 ! arteriole
is_a: UBERON:0003517 ! implied link automatically realized ! kidney blood vessel
relationship: part_of UBERON:0001229 ! renal corpuscle
[Term]
id: UBERON:0004640
name: efferent arteriole
def: "The efferent arterioles are blood vessels that are part of the urinary tract of organisms. The efferent arterioles form from a convergence of the capillaries of the glomerulus. They play an important role in maintaining the glomerular filtration rate despite fluctuations in blood pressure. In the mammalian kidney they follow two markedly different courses, depending on the location of the glomeruli from which they arise. In the mammalian kidney about 15% of glomeruli lie close to the boundary between the renal cortex and renal medulla and are known as juxtamedullary glomeruli. The rest are simply undifferentiated cortical glomeruli. [WP,unvetted]." [Wikipedia:Efferent_arteriole]
xref: MA:0002585
xref: ZFA:0005308
is_a: UBERON:0001980 ! arteriole
is_a: UBERON:0003517 ! implied link automatically realized ! kidney blood vessel
relationship: part_of UBERON:0001229 ! renal corpuscle
[Term]
id: UBERON:0004641
name: spleen capsule
def: "A capsule that is part of a spleen [Obol]." [OBOL:automatic]
synonym: "capsule of spleen" EXACT [FMA:15849]
synonym: "fibroelastic coat of spleen" EXACT [FMA:15849]
synonym: "Malpighian capsule" EXACT [FMA:15849]
synonym: "splenic capsule" EXACT [FMA:15849]
synonym: "tunica fibrosa (splen)(lien)" EXACT [FMA:15849]
xref: FMA:15849
xref: MA:0000753
is_a: UBERON:0003893 ! implied link automatically realized ! capsule
relationship: part_of UBERON:0002106
intersection_of: UBERON:0003893 ! capsule
intersection_of: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0004642
name: third ventricle ependyma
def: "An ependyma that is part of a third ventricle [Obol]." [OBOL:automatic]
synonym: "3rd ventricle ependyma" EXACT [MA:0000882]
synonym: "ependyma of third ventricle" EXACT [MA:0000882]
xref: FMA:242833
xref: MA:0000882
is_a: UBERON:0005357 ! implied link automatically realized ! brain ependyma
relationship: part_of UBERON:0002286
intersection_of: UBERON:0004670 ! ependyma
intersection_of: part_of UBERON:0002286 ! third ventricle
[Term]
id: UBERON:0004643
name: lateral ventricle ependyma
def: "An ependyma that is part of a lateral ventricle [Obol]." [OBOL:automatic]
xref: FMA:242825
xref: MA:0000964
is_a: UBERON:0005357 ! implied link automatically realized ! brain ependyma
relationship: part_of UBERON:0002285
intersection_of: UBERON:0004670 ! ependyma
intersection_of: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0004644
name: fourth ventricle ependyma
def: "An ependyma that is part of a fourth ventricle [Obol]." [OBOL:automatic]
synonym: "4th ventricle ependyma" RELATED [MA:0000986]
xref: FMA:242835
xref: MA:0000986
is_a: UBERON:0005357 ! implied link automatically realized ! brain ependyma
relationship: part_of UBERON:0002422
intersection_of: UBERON:0004670 ! ependyma
intersection_of: part_of UBERON:0002422 ! fourth ventricle
[Term]
id: UBERON:0004645
name: urinary bladder urothelium
synonym: "Bladder transitional cell epithelium" EXACT [FMA:15936]
synonym: "transitional epithelium" RELATED [MA:0001693]
synonym: "Urinary bladder transitional epithelium" EXACT [FMA:15936]
synonym: "urothelium of urinary bladder" EXACT [FMA:15936]
xref: FMA:15936
xref: MA:0001693
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000365 ! implied link automatically realized ! urothelium
is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa
relationship: part_of UBERON:0001255
intersection_of: UBERON:0000365 ! urothelium
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001259 ! mucosa of urinary bladder
[Term]
id: UBERON:0004646
name: infraorbital artery
def: "The infraorbital artery is an artery in the head that runs in the maxilla, emerging through the infraorbital foramen, just under the orbit of the eye. [WP,unvetted]." [Wikipedia:Infraorbital_artery]
xref: FMA:49767
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Gray511.png/200px-Gray511.png
xref: MA:0001977
is_a: UBERON:0001637 ! artery
relationship: branch_of UBERON:0001616 ! maxillary artery
[Term]
id: UBERON:0004647
name: liver lobule
synonym: "hepatic lobule" EXACT [FMA:14471]
xref: FMA:14471
xref: MA:0002494
is_a: UBERON:0000465 ! material anatomical entity
relationship: part_of UBERON:0001280 ! liver parenchyma
[Term]
id: UBERON:0004648
name: esophagus muscularis mucosa
synonym: "lamina muscularis of esophageal mucous membrane" EXACT [FMA:63059]
xref: FMA:63059
xref: MA:0002681
is_a: UBERON:0001135 ! smooth muscle tissue
is_a: UBERON:0002112 ! implied link automatically realized ! smooth muscle of esophagus
relationship: part_of UBERON:0002469 ! esophagus mucosa
[Term]
id: UBERON:0004649
name: sphenoid bone pterygoid process
synonym: "processus pterygoideus" EXACT [FMA:54682]
synonym: "pterygoid process of sphenoid" EXACT [FMA:54682]
synonym: "pterygoid process of sphenoid bone" RELATED [MA:0002774]
synonym: "pterygoid process of sphenoid bone" EXACT [FMA:54682]
xref: FMA:54682
xref: MA:0002774
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
is_a: UBERON:0004530 ! implied link automatically realized ! bony projection
relationship: part_of UBERON:0001677 ! sphenoid bone
[Term]
id: UBERON:0004650
name: tongue keratinized epithelium
xref: FMA:74865
xref: MA:0002787
is_a: UBERON:0000486 ! multilaminar epithelium
is_a: UBERON:0003357 ! implied link automatically realized ! epithelium of tongue
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0004651
name: scapula spine
def: "a prominent plate of bone, which crosses obliquely the medial four-fifths of the scapula at its upper part, and separates the supra- from the infraspinatous fossa." [Wikipedia:Spine_of_scapula]
synonym: "scapular spine" RELATED [MA:0002806]
synonym: "Scapular spine" EXACT [FMA:13453]
xref: FMA:13453
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Gray205_left_scapula_lateral_view.png/200px-Gray205_left_scapula_lateral_view.png
xref: MA:0002806
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001124 ! scapula
[Term]
id: UBERON:0004652
name: humerus diaphysis
synonym: "body of humerus" EXACT [FMA:13305]
synonym: "humeral diaphysis" EXACT [FMA:13305]
synonym: "shaft of humerus" EXACT [FMA:13305]
xref: FMA:13305
xref: MA:0002807
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005055 ! implied link automatically realized ! zone of long bone
relationship: part_of UBERON:0000976 ! humerus
[Term]
id: UBERON:0004654
name: temporal process of zygomatic bone
def: "The temporal process of the zygomatic bone, directed backward and medialward, is concave, presenting medially a rough, triangular area, for articulation with the maxilla, and laterally a smooth, concave surface, the upper part of which forms the anterior boundary of the temporal fossa, the lower a part of the infratemporal fossa. Near the center of this surface is the zygomaticotemporal foramen for the transmission of the zygomaticotemporal nerve." [Wikipedia:Temporal_process_of_the_zygomatic_bone]
synonym: "processus temporalis (os zygomaticum)" EXACT [FMA:52904]
synonym: "zygomatic bone temporal process" EXACT [MA:0002812]
xref: FMA:52904
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Gray166.png/200px-Gray166.png
xref: MA:0002812
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
is_a: UBERON:0004530 ! implied link automatically realized ! bony projection
relationship: part_of UBERON:0001683 ! zygomatic bone
relationship: part_of UBERON:0002500 ! zygomatic arch
[Term]
id: UBERON:0004655
name: zygomatic process of temporal bone
alt_id: UBERON:0004653
def: "The zygomatic process of the temporal bone is a long, arched process projecting from the lower part of the squamous portion of the temporal bone. It articulates with the zygomatic bone. This process is at first directed lateralward, its two surfaces looking upward and downward; it then appears as if twisted inward upon itself, and runs forward, its surfaces now looking medialward and lateralward." [Wikipedia:Zygomatic_process_of_temporal_bone]
synonym: "processus zygomaticus" EXACT [FMA:52886]
synonym: "temporal bone zygomatic process" EXACT [MA:0002811]
synonym: "temporal zygomatic process" EXACT [FMA:52886]
xref: FMA:52886
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray137.png/200px-Gray137.png
xref: MA:0002811
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
is_a: UBERON:0004530 ! implied link automatically realized ! bony projection
relationship: part_of UBERON:0001678 ! temporal bone
relationship: part_of UBERON:0002500 ! zygomatic arch
[Term]
id: UBERON:0004657
name: mandible condylar process
def: "The posterior process on the ramus of the mandible composed of two parts: a superior part, the articular portion, and an inferior part, the condylar neck." [BTO:0001750, Wikipedia:Mandibular_condyle]
synonym: "mandibular condyloid process" RELATED [MA:0002816]
synonym: "Processus condylaris" EXACT [FMA:52836]
xref: BTO:0001750
xref: FMA:52836
xref: GAID:219
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Processuscondylarismandibulae.PNG/200px-Processuscondylarismandibulae.PNG
xref: MA:0002816
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
is_a: UBERON:0004530 ! implied link automatically realized ! bony projection
relationship: part_of UBERON:0001684 ! mandible
[Term]
id: UBERON:0004658
name: mandible head
synonym: "Mandibular head" EXACT [FMA:59331]
xref: FMA:59331
xref: MA:0002817
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001684 ! mandible
[Term]
id: UBERON:0004659
name: mandible neck
synonym: "Mandibular neck" EXACT [FMA:59332]
xref: FMA:59332
xref: MA:0002818
is_a: UBERON:0001560 ! neck of organ
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001684 ! mandible
[Term]
id: UBERON:0004660
name: mandible coronoid process
synonym: "mandibular coronoid process" RELATED [MA:0002819]
synonym: "Processus coronoideus (mandibula)" EXACT [FMA:52833]
xref: FMA:52833
xref: MA:0002819
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001684 ! mandible
[Term]
id: UBERON:0004661
name: mandible temporal crest
synonym: "Crista temporalis (Mandibulae)" EXACT [FMA:59484]
xref: FMA:59484
xref: MA:0002820
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001684 ! mandible
[Term]
id: UBERON:0004662
name: vertebra lamina
synonym: "Lamina of vertebral arch" EXACT [FMA:11951]
synonym: "vertebral lamina" RELATED [MA:0002876]
synonym: "Vertebral lamina" EXACT [FMA:11951]
xref: FMA:11951
xref: MA:0002876
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002412 ! vertebra
relationship: part_of UBERON:0003861 ! vertebral arch
[Term]
id: UBERON:0004663
name: aorta wall
def: "An anatomical wall that is part of an aorta [Obol]." [OBOL:automatic]
synonym: "Aortic wall" EXACT [FMA:14156]
xref: FMA:14156
xref: MA:0002901
is_a: UBERON:0000415 ! implied link automatically realized ! artery wall
relationship: part_of UBERON:0000947
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000947 ! aorta
[Term]
id: UBERON:0004664
name: aorta tunica adventitia
xref: FMA:14283
xref: MA:0002902
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0004663 ! aorta wall
[Term]
id: UBERON:0004665
name: seminal vesicle muscle layer
def: "A portion of muscle tissue that is part of a seminal vesicle [Obol]." [OBOL:automatic]
synonym: "Muscular coat of seminal gland" EXACT [FMA:19404]
synonym: "Muscular layer of seminal gland" EXACT [FMA:19404]
synonym: "Tunica muscularis (Vesicula seminalis)" EXACT [FMA:19404]
xref: FMA:19404
xref: MA:0002913
is_a: UBERON:0002385 ! implied link automatically realized ! muscle tissue
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000998
intersection_of: UBERON:0002385 ! muscle tissue
intersection_of: part_of UBERON:0000998 ! seminal vesicle
[Term]
id: UBERON:0004666
name: interventricular septum membranous part
synonym: "membranous interventricular septum" RELATED [MA:0002939]
synonym: "Membranous interventricular septum" EXACT [FMA:7135]
synonym: "Membranous portion of interventricular septum" EXACT [FMA:7135]
synonym: "Pars membranacea (septi interventricularis)" EXACT [FMA:7135]
xref: EHDAA2:0000887
xref: FMA:7135
xref: HOG:0000927
xref: MA:0002939
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002094 ! interventricular septum
[Term]
id: UBERON:0004667
name: interventricular septum muscular part
def: "A portion of muscle tissue that is part of a interventricular septum [Obol]." [OBOL:automatic]
synonym: "muscular interventricular septum" RELATED [MA:0002940]
synonym: "Muscular interventricular septum" EXACT [FMA:7134]
synonym: "Pars muscularis (septi interventricularis)" EXACT [FMA:7134]
xref: EHDAA2:0000888
xref: FMA:7134
xref: MA:0002940
is_a: UBERON:0002385 ! implied link automatically realized ! muscle tissue
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002094
intersection_of: UBERON:0002385 ! muscle tissue
intersection_of: part_of UBERON:0002094 ! interventricular septum
[Term]
id: UBERON:0004668
name: fourth ventricle aperture
def: "An orifice that is part of a fourth ventricle [Obol]." [OBOL:automatic]
xref: FMA:242766
xref: MA:0002945
is_a: UBERON:0000161 ! implied link automatically realized ! orifice
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0002422
intersection_of: UBERON:0000161 ! orifice
intersection_of: part_of UBERON:0002422 ! fourth ventricle
[Term]
id: UBERON:0004670
name: ependyma
def: "Ependymal epithelium lining the ventricular cavities and canals of the CNS is simple, columnar or cuboidal." [BTO:0000401]
comment: FMA has ependyma proper and ependyma, not defined
synonym: "ependyma of neuraxis" RELATED [FMA:242791]
synonym: "ependymal epithelium" RELATED [BTO:0000401]
synonym: "lamina epithelialis" RELATED [FMA:242791]
xref: BTO:0000401
xref: FMA:242791
xref: GAID:608
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0005358
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0005358 ! ventricle of nervous system
[Term]
id: UBERON:0004671
name: gyrus rectus
synonym: "gyrus rectus" EXACT [NIF_GrossAnatomy:birnlex_1103]
synonym: "medial part of gyri orbitales" EXACT [FMA:61893]
synonym: "rectal gyrus" EXACT [FMA:61893]
synonym: "rectus gyrus" EXACT [FMA:61893]
xref: FMA:61893
xref: NIF_GrossAnatomy:birnlex_1103
is_a: UBERON:0002791 ! regional part of telencephalon
is_a: UBERON:0003022 ! lobe parts of cerebral cortex
relationship: part_of UBERON:0001870 ! frontal cortex
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0004672
name: posterior horn lateral ventricle
synonym: "posterior horn lateral ventricle" EXACT [NIF_GrossAnatomy:birnlex_1297]
synonym: "posterior horn of lateral ventricle" EXACT [FMA:83700]
xref: FMA:83700
xref: NIF_GrossAnatomy:birnlex_1297
is_a: UBERON:0004086 ! brain ventricle
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0004673
name: trigeminal nerve root
synonym: "trigeminal nerve root" EXACT [NIF_GrossAnatomy:birnlex_1346]
synonym: "trigeminal neural root" EXACT [FMA:52610]
xref: FMA:52610
xref: NIF_GrossAnatomy:birnlex_1346
is_a: UBERON:0002211 ! segment of nerve
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0004733 ! implied link automatically realized ! segmental subdivision of hindbrain
relationship: part_of UBERON:0001645 ! trigeminal nerve
[Term]
id: UBERON:0004674
name: facial nerve root
synonym: "central part of facial nerve" EXACT [FMA:53418]
synonym: "facial nerve fibers" EXACT [FMA:53418]
synonym: "facial nerve root" EXACT [NIF_GrossAnatomy:birnlex_1513]
synonym: "facial neural root" EXACT [FMA:53418]
xref: FMA:53418
xref: NIF_GrossAnatomy:birnlex_1513
is_a: UBERON:0002211 ! segment of nerve
is_a: UBERON:0002680 ! regional part of metencephalon
is_a: UBERON:0004733 ! implied link automatically realized ! segmental subdivision of hindbrain
relationship: part_of UBERON:0001647 ! facial nerve
[Term]
id: UBERON:0004675
name: hypoglossal nerve root
synonym: "central part of hypoglossal nerve" EXACT [FMA:72632]
synonym: "hypoglossal nerve fibers" EXACT [FMA:72632]
synonym: "hypoglossal nerve root" EXACT [NIF_GrossAnatomy:birnlex_1588]
synonym: "root of hypoglossal nerve" EXACT [FMA:72632]
xref: FMA:72632
xref: NIF_GrossAnatomy:birnlex_1588
is_a: UBERON:0002211 ! segment of nerve
is_a: UBERON:0002678 ! regional part of medulla oblongata
is_a: UBERON:0004733 ! implied link automatically realized ! segmental subdivision of hindbrain
relationship: part_of UBERON:0001650 ! hypoglossal nerve
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0004676
name: spinal cord lateral horn
synonym: "intermediate gray column of spinal cord" EXACT [FMA:256536]
synonym: "intermediate grey column of spinal cord" EXACT [FMA:256536]
synonym: "lateral gray matter of spinal cord" EXACT [FMA:256536]
synonym: "lateral horn of spinal cord" EXACT [FMA:256536]
synonym: "spinal cord lateral horn" EXACT [NIF_GrossAnatomy:birnlex_2666]
xref: FMA:256536
xref: NIF_GrossAnatomy:birnlex_2666
is_a: UBERON:0002315 ! gray matter of spinal cord
[Term]
id: UBERON:0004677
name: spinal cord gray commissure
synonym: "spinal cord gray commissure" EXACT [NIF_GrossAnatomy:birnlex_2669]
xref: FMA:77036
xref: NIF_GrossAnatomy:birnlex_2669
is_a: UBERON:0002315 ! gray matter of spinal cord
[Term]
id: UBERON:0004678
name: apex of spinal cord dorsal horn
synonym: "apex of dorsal gray column" EXACT [FMA:256700]
synonym: "apex of dorsal horn of spinal cord" EXACT [FMA:256700]
synonym: "apex of posterior horn of spinal cord" EXACT [FMA:256700]
synonym: "apex of spinal cord dorsal horn" EXACT [NIF_GrossAnatomy:birnlex_2670]
xref: FMA:256700
xref: NIF_GrossAnatomy:birnlex_2670
is_a: UBERON:0002315 ! gray matter of spinal cord
[Term]
id: UBERON:0004679
name: dentate gyrus molecular layer
synonym: "dentate gyrus molecular layer" EXACT [NIF_GrossAnatomy:birnlex_4127]
xref: FMA:83677
xref: NIF_GrossAnatomy:birnlex_4127
is_a: UBERON:0002304 ! layer of dentate gyrus
relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation
[Term]
id: UBERON:0004680
name: body of fornix
def: "The columns (anterior pillars; fornicolumns) of the fornix arch downward in front of the interventricular foramen and behind the anterior commissure, and each descends through the gray substance in the lateral wall of the third ventricle to the base of the brain, where it ends in the corpus mammillare. [WP,unvetted]." [Wikipedia:Columns_of_fornix]
synonym: "body of fornix" EXACT [NIF_GrossAnatomy:birnlex_739]
synonym: "column of fornix" EXACT [FMA:61968]
synonym: "fornix body" EXACT [FMA:61968]
xref: FMA:61968
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Gray747.png/200px-Gray747.png
xref: NIF_GrossAnatomy:birnlex_739
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002780 ! regional part of forebrain
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
[Term]
id: UBERON:0004681
name: vestibular system
def: "The vestibular system, which contributes to our balance and our sense of spatial orientation, is the sensory system that provides the dominant input about movement and equilibrioception. Together with the cochlea, a part of the auditory system, it constitutes the labyrinth of the inner ear, situated in the vestibulum in the inner ear. As our movements consist of rotations and translations, the vestibular system comprises two components: the semicircular canal system, which indicate rotational movements; and the otoliths, which indicate linear accelerations. The vestibular system sends signals primarily to the neural structures that control our eye movements, and to the muscles that keep us upright. The projections to the former provide the anatomical basis of the vestibulo-ocular reflex, which is required for clear vision; and the projections to the muscles that control our posture are necessary to keep us upright." [Wikipedia:Vestibular_system]
synonym: "vestibular organ system" EXACT [FMA:7193]
synonym: "vestibular system" EXACT [NIF_GrossAnatomy:nlx_anat_090819]
xref: BTO:0003381
xref: FMA:7193
xref: NIF_GrossAnatomy:nlx_anat_090819
is_a: UBERON:0001032 ! sensory system
[Term]
id: UBERON:0004682
name: corona radiata
def: "For the structure in embryology, see Corona radiata (embryology) In neuroanatomy, the corona radiata is a white matter sheet that continues caudally as the internal capsule and rostrally as the centrum semiovale. This sheet of axons contains both descending and ascending axons that carry nearly all of the neural traffic from and to the cerebral cortex. The corona radiata is associated with the corticospinal tract, the corticopontine tract, and the corticobulbar tract. [WP,unvetted]." [Wikipedia:Corona_radiata]
synonym: "corona radiata" EXACT [NIF_GrossAnatomy:nlx_anat_090903]
xref: FMA:18661
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/26/Gray745.png/200px-Gray745.png
xref: NIF_GrossAnatomy:nlx_anat_090903
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002791 ! regional part of telencephalon
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
[Term]
id: UBERON:0004683
name: parasubiculum
synonym: "parasubiculum" EXACT [NIF_GrossAnatomy:nlx_anat_091002]
xref: FMA:77604
xref: NIF_GrossAnatomy:nlx_anat_091002
is_a: UBERON:0002619 ! regional part of cerebral cortex
[Term]
id: UBERON:0004684
name: raphe nuclei
def: "Thin plates of cells in and immediately adjacent to the sagittal plane[NIF]. A moderate-size cluster of nuclei found in the brain stem. Their main function is to release serotonin to the rest of the brain. Selective serotonin reuptake inhibitor (SSRI) antidepressants are believed to act in these nuclei, as well as at their targets. The raphe nuclei are traditionally considered to be the medial portion of the reticular formation, and they appear as a ridge of cells in the center and most medial portion of the brain stem." [NIF_GrossAnatomy:nlx_anat_20090205, Wikipedia:Raphe_nucleus]
synonym: "raphe nuclei" EXACT [NIF_GrossAnatomy:nlx_anat_20090205]
synonym: "raphe nuclei" EXACT [FMA:84017]
synonym: "raphe nuclei set" EXACT [FMA:84017]
xref: BTO:0003387
xref: FMA:84017
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Gray694.png/200px-Gray694.png
xref: NIF_GrossAnatomy:nlx_anat_20090205
xref: ZFA:0001429
is_a: UBERON:0002616 ! regional part of brain
[Term]
id: UBERON:0004685
name: middle temporal area
def: "Brodmann area 21, or BA21, is part of the temporal cortex in the human brain. The region encompasses most of the lateral temporal cortex, a region believed to play a part in auditory processing and language. Language function is left lateralized in most individuals. BA21 is superior to BA20 and inferior to BA40 and BA41. This area is also known as middle temporal area 21. It is a subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. In the human it corresponds approximately to the middle temporal gyrus. It is bounded rostrally by the temporopolar area 38 (H), ventrally by the inferior temporal area 20, caudally by the occipitotemporal area 37 (H), and dorsally by the superior temporal area 22 (Brodmann-1909). [WP,unvetted]." [Wikipedia:Brodmann_area_21]
synonym: "area 21 of Brodmann" EXACT [FMA:68618]
synonym: "Brodmann area 21" EXACT []
synonym: "middle temporal area" EXACT [NIF_GrossAnatomy:nlx_anat_20090308]
synonym: "middle temporal area" EXACT [FMA:68618]
xref: FMA:68618
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/e/e8/Brodmann_area_21.png/200px-Brodmann_area_21.png
xref: NIF_GrossAnatomy:nlx_anat_20090308
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0004686
name: gastro-splenic ligament
synonym: "gastrolienal ligament" EXACT [FMA:16517]
synonym: "gastrosplenc ligament" EXACT [FMA:16517]
xref: EHDAA2:0000702
xref: FMA:16517
xref: HOG:0000354
xref: MA:0001619
is_a: UBERON:0000211 ! ligament
[Term]
id: UBERON:0004687
name: lieno-renal ligament
synonym: "lienorenal ligament" EXACT [FMA:16522]
synonym: "ligamentum splenorenale (lienorenale, phrenicosplenicum)" EXACT [FMA:16522]
synonym: "phrenicolienal ligament" EXACT [FMA:16522]
synonym: "splenicorenal ligament" EXACT [FMA:16522]
xref: FMA:16522
xref: MA:0001620
is_a: UBERON:0000211 ! ligament
[Term]
id: UBERON:0004688
name: costo-cervical trunk
def: "The costocervical trunk arises from the upper and back part of the subclavian artery, behind the scalenus anterior on the right side, and medial to that muscle on the left side. Passing backward, it splits into the deep cervical artery and the supreme intercostal artery (or the Highest intercostal artery), which descends behind the pleura in front of the necks of the first and second ribs, and anastomoses with the first aortic intercostal (3rd posterior intercostal artery). As it crosses the neck of the first rib it lies medial to the anterior division of the first thoracic nerve, and lateral to the first thoracic ganglion of the sympathetic trunk. In the first intercostal space, it gives off a branch which is distributed in a manner similar to the distribution of the aortic intercostals. The branch for the second intercostal space usually joins with one from the highest aortic intercostal artery. This branch is not constant, but is more commonly found on the right side; when absent, its place is supplied by an intercostal branch from the aorta. Each intercostal gives off a posterior branch which goes to the posterior vertebral muscles, and sends a small spinal branch through the corresponding intervertebral foramen to the medulla spinalis and its membranes. [WP,unvetted]." [Wikipedia:Costocervical_trunk]
synonym: "costocervical trunk" EXACT [FMA:10636]
synonym: "trunk of costocervical artery" EXACT [FMA:10636]
xref: FMA:10636
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b3/Costocervical_trunk_with_branches.png/200px-Costocervical_trunk_with_branches.png
xref: MA:0001939
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0004689
name: naso-frontal vein
synonym: "nasofrontal vein" EXACT [FMA:51729]
xref: FMA:51729
xref: MA:0002182
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0004690
name: pancreatico-duodenal vein
synonym: "pancreaticoduodenal vein" EXACT [FMA:15398]
synonym: "Superior posterior pancreaticoduodenal vein" EXACT [FMA:15398]
xref: FMA:15398
xref: MA:0002190
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0004691
name: bulbourethral gland secretion
synonym: "bulbo-urethral gland secretion" EXACT [FMA:62968]
xref: FMA:62968
xref: MA:0002524
is_a: UBERON:0001968 ! semen
relationship: secreted_by UBERON:0002366 ! bulbo-urethral gland
[Term]
id: UBERON:0004692
name: external naris epithelium
def: "An epithelium that is part of a naris [Obol]." [OBOL:automatic]
xref: MA:0001321
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0000003
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000003 ! naris
[Term]
id: UBERON:0004693
name: peyer's patch epithelium
def: "An epithelium that is part of a Peyer ' s patch [Obol]." [OBOL:automatic]
xref: MA:0000731
is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa
is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium
relationship: part_of UBERON:0001211
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001211 ! Peyer's patch
[Term]
id: UBERON:0004694
name: harderian gland epithelium
def: "An epithelium that is part of a Harderian gland [Obol]." [OBOL:automatic]
xref: MA:0001248
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0004187
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0004187 ! Harderian gland
[Term]
id: UBERON:0004695
name: arterial system smooth muscle
def: "A portion of smooth muscle tissue that is part of an arterial system [Obol]." [OBOL:automatic]
xref: MA:0000704
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
relationship: part_of UBERON:0004572
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0004572 ! arterial system
[Term]
id: UBERON:0004696
name: venous system smooth muscle
def: "A portion of smooth muscle tissue that is part of a venous system [Obol]." [OBOL:automatic]
xref: MA:0000715
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
relationship: part_of UBERON:0004582
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0004582 ! venous system
[Term]
id: UBERON:0004697
name: peyer's patch germinal center
def: "A portion of secondary nodular lymphoid tissue that is part of a Peyer ' s patch [Obol]." [OBOL:automatic]
xref: MA:0000734
is_a: UBERON:0001745 ! implied link automatically realized ! secondary nodular lymphoid tissue
relationship: part_of UBERON:0001211
intersection_of: UBERON:0001745 ! secondary nodular lymphoid tissue
intersection_of: part_of UBERON:0001211 ! Peyer's patch
[Term]
id: UBERON:0004698
name: vena cava endothelium
def: "An endothelium that is part of a vena cava [Obol]." [OBOL:automatic]
xref: MA:0000713
is_a: UBERON:0001919 ! implied link automatically realized ! endothelium of vein
relationship: part_of UBERON:0004087
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0004087 ! vena cava
[Term]
id: UBERON:0004699
name: outflow tract endothelium
def: "An endothelium that is part of a outflow tract [Obol]." [OBOL:automatic]
xref: MA:0000490
is_a: UBERON:0004852 ! implied link automatically realized ! cardiovascular system endothelium
relationship: part_of UBERON:0004145
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0004145 ! outflow tract
[Term]
id: UBERON:0004700
name: arterial system endothelium
def: "An endothelium that is part of an arterial system [Obol]." [OBOL:automatic]
xref: MA:0000703
is_a: UBERON:0004852 ! implied link automatically realized ! cardiovascular system endothelium
relationship: part_of UBERON:0004572
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0004572 ! arterial system
[Term]
id: UBERON:0004701
name: venous system endothelium
def: "An endothelium that is part of a venous system [Obol]." [OBOL:automatic]
xref: MA:0000714
is_a: UBERON:0004852 ! implied link automatically realized ! cardiovascular system endothelium
relationship: part_of UBERON:0004582
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0004582 ! venous system
[Term]
id: UBERON:0004702
name: respiratory system blood vessel endothelium
def: "A blood vessel endothelium that is part of a respiratory system [Obol]." [OBOL:automatic]
xref: MA:0001805
is_a: UBERON:0004638 ! implied link automatically realized ! blood vessel endothelium
is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium
relationship: part_of UBERON:0001004
intersection_of: UBERON:0004638 ! blood vessel endothelium
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004703
name: dorsal thalamus
comment: MA and ZFA think there is a distinct dorsal thalamus, but FMA says its an exact synonym. TODO. http://www.ncbi.nlm.nih.gov/pubmed/8167659
synonym: "dorsal thalamus" RELATED [FMA:62007]
synonym: "thalamus, pars dorsalis" EXACT [ZFA:0000653]
xref: MA:0000180
xref: ZFA:0000653
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0004704
name: bone fossa
def: "a depression or hollow in a bone[WP]." [Wikipedia:Fossa#Anatomy]
synonym: "fossa" EXACT []
xref: FMA:45791
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001474 ! bone
[Term]
id: UBERON:0004705
name: fenestra
def: "an opening in the skull or other bones[WP]." [Wikipedia:Fenestra]
comment: TODO check fenestra vs fossa. fenestra = hole, fossa = depression with bottom?
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001474 ! bone
[Term]
id: UBERON:0004706
name: bulbus cordis
def: "The bulbus cordis lies ventral to the primitive ventricle after the developing heart assumes its S-shaped form. Together, the bulbus cordis and the primitive ventricle give rise to the ventricle of the formed heart. The adjacent walls of the bulbus cordis and ventricle approximate, fuse, and finally disappear, and the bulbus cordis now communicates freely with the right ventricle, while the junction of the bulbus with the truncus arteriosus is brought directly ventral to and applied to the atrial canal. By the upgrowth of the ventricular septum the bulbus cordis is in great measure separated from the left ventricle, but remains an integral part of the right ventricle, of which it forms the infundibulum[WP]." [Wikipedia:Bulbus_cordis]
xref: EHDAA:438
xref: EHDAA:768
xref: EHDAA2:0000196
xref: EMAPA:16216
xref: EMAPA:16333
xref: FMA:70300
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/c/c9/Gray466.png/200px-Gray466.png
xref: ncithesaurus:Bulbus_Cordis
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0004707
name: pharyngula stage
def: "A stage that follows the blastula, gastrula and neurula stages. At the pharyngula stage, all vertebrate embryos show remarkable similarities." [Wikipedia:Pharyngula]
comment: TODO: check with evo-devo biologists
synonym: "pharyngula" RELATED []
synonym: "phylotypic stage" EXACT []
is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000110 ! neurula stage
[Term]
id: UBERON:0004708
name: limb/fin
comment: this class is the union of the classes limb and fin. TODO - should limb subsume fin? GO treats these as siblings, yet the GO definition appears to apply to fins
synonym: "jointed paired lateral appendage" NARROW [UBERON:cjm]
synonym: "limb or fin" EXACT [UBERON:cjm]
is_a: UBERON:0000026 ! appendage
[Term]
id: UBERON:0004709
name: limb/fin of posterior region of body
def: "A limb/fin that is part of a posterior region of body [Obol]." [OBOL:automatic]
comment: TODO - as defined, this includes ALL paired fins in the posterior region
synonym: "hindlimb/pelvic fin" EXACT [UBERON:cjm]
is_a: UBERON:0004708 ! implied link automatically realized ! limb/fin
relationship: part_of UBERON:0000154
intersection_of: UBERON:0004708 ! limb/fin
intersection_of: part_of UBERON:0000154 ! posterior region of body
[Term]
id: UBERON:0004710
name: limb/fin of anterior region of body
def: "A limb/fin that is part of an anterior region of body [Obol]." [OBOL:automatic]
comment: TODO - as defined, this includes ALL paired fins in the anterior region
synonym: "forelimb/pectoral fin" EXACT [UBERON:cjm]
is_a: UBERON:0004708 ! implied link automatically realized ! limb/fin
relationship: part_of UBERON:0000153
intersection_of: UBERON:0004708 ! limb/fin
intersection_of: part_of UBERON:0000153 ! anterior region of body
[Term]
id: UBERON:0004711
name: jugular vein
def: "Any one of the several large veins of the neck that drain blood from the head[BTO]. Veins in the neck which drain the brain, face, and neck into the brachiocephalic or subclavian veins[GAID]. The jugular veins are veins that bring deoxygenated blood from the head back to the heart via the superior vena cava[WP]." [BTO:0001744, Wikipedia:Jugular_vein]
synonym: "jugular" RELATED []
synonym: "vena jugularis" RELATED [BTO:0001744]
xref: BTO:0001744
xref: GAID:536
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Gray558.png/200px-Gray558.png
xref: MA:0002154
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003502 ! implied link automatically realized ! neck blood vessel
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0004712
name: cardia
def: "The opening of the esophagus into the stomach; also: the part of the stomach adjoining this opening[BTO]. The cardia is the anatomical term for the part of the stomach attached to the esophagus. The cardia begins immediately distal to the z-line of the gastroeosphageal junction, where the squamous epithelium of the esophagus gives way to the columnar epithelium of the gastrointestinal tract[WP]" [BTO:0000198, Wikipedia:Cardia]
comment: There were previously conflicting statements in the academic anatomy community[10][11][12] over whether the cardia is part of the stomach, part of the esophagus or a distinct entity. Modern surgical and medical textbooks have agreed that "The gastric cardia is now clearly considered to be part of the stomach"[13][14]. Classical anatomy textbooks, and some other resources[15], describe the cardia as the first of 4 regions of the stomach. This makes sense histologically because the mucosa of the cardia is the same as that of the stomach[WP].
xref: BTO:0000198
xref: GAID:319
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/33/Illu_stomach.jpg/200px-Illu_stomach.jpg
xref: Wikipedia:Cardia
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0004713
name: corpus cavernosum penis
def: "One of the columns of erectile tissue forming the dorsum and sides of the penis." [BTO:0002019, Wikipedia:Corpus_cavernosum_penis]
synonym: "cavernous body of penis" RELATED [BTO:0002019]
synonym: "corpus sopngiosum penis" RELATED [BTO:0002019]
synonym: "penile corpus cavernosum" RELATED [BTO:0002019]
synonym: "spongy body of male urethra" RELATED [BTO:0002019]
synonym: "spongy body of penis" RELATED [BTO:0002019]
xref: BTO:0002019
xref: FMA:19618
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/f/f6/Gray1155.png/200px-Gray1155.png
xref: Wikipedia:Corpus_cavernosum_penis
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000989 ! penis
[Term]
id: UBERON:0004714
name: septum pellucidum
def: "The septum pellucidum is made up of two thin sheets of mostly glial-like elements that abut each other in the midline and have a potential space between them. Those sheets also separate the left and right lateral ventricles from each other. At the base of the sheets rostrally, however, are the septal nuclei, which are important components of the limbic system.a thin, triangular, vertical membrane separating the lateral ventricles of the brain. It separates the anterior horn of the left and right lateral ventricles. It runs as a sheet from the corpus callosum down to the fornix. When the hemispheres are cut apart, the septum remains on one hemisphere, usually the left. The septum pellucidum is implicated in pleasure, mood, rage, sexual gratification and more. Lesions of the septum lead to sham rage. Stimulation of the medial forebrain bundle (primary efferent of the septum) restores normal behavior." [BTO:0003448, Wikipedia:Septum_pellucidum]
synonym: "pellucidum" RELATED [BTO:0003448]
synonym: "septum lucidum" RELATED [BTO:0003448]
xref: BTO:0003448
xref: FMA:61844
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4d/Gray732.png/200px-Gray732.png
xref: MA:0002979
xref: Wikipedia:Septum_pellucidum
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0004715
name: annulus fibrosus disci intervertebralis
def: "The ring of fibrocartilage and fibrous tissue forming the circumference of the intervertebral disc; surrounds the nucleus pulposus, which is prone to herniation when the annulus fibrosus is compromised." [BTO:0003629, Wikipedia:Annulus_fibrosus_disci_intervertebralis]
synonym: "annulus fibrosus of intervertebral disc" RELATED [BTO:0003629]
synonym: "fibrous ring of intervertebral disc" RELATED [BTO:0003629]
xref: BTO:0003629
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/d/d9/Cervical_vertebra_english.png/200px-Cervical_vertebra_english.png
xref: Wikipedia:Annulus_fibrosus_disci_intervertebralis
is_a: UBERON:0002418 ! cartilage
is_a: UBERON:0004267 ! implied link automatically realized ! back connective tissue
relationship: part_of UBERON:0001066 ! intervertebral disk
[Term]
id: UBERON:0004716
name: conceptus
def: "A fertilized egg, embryo, or fetus[BTO]. The embryo and its adnexa (appendages or adjunct parts) or associated membranes (i.e. the products of conception) The conceptus includes all structures that develop from the zygote, both embryonic and extraembryonic. It includes the embryo as well as the embryonic part of the placenta and its associated membranes - amnion, chorion (gestational sac), and yolk sac[WP]." [BTO:0003834, Wikipedia:Conceptus]
xref: BTO:0003834
xref: Wikipedia:Conceptus
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0004717
name: Brodmann area 29
def: "A cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. In the human it is a narrow band located in the isthmus of cingulate gyrus. Cytoarchitecturally it is bounded internally by the ectosplenial area 26 and externally by the agranular retrolimbic area 30." [BTO:0003978]
synonym: "granular retrolimbic area 29" RELATED [BTO:0003978, Wikipedia:Brodmann_area_29]
xref: BTO:0003978
xref: FMA:68626
xref: Wikipedia:Brodmann_area_29
is_a: UBERON:0002619 ! regional part of cerebral cortex
[Term]
id: UBERON:0004718
name: Brodmann area 26
def: "In the human this area is called ectosplenial area 26. It is a cytoarchitecturally defined portion of the retrosplenial region of the cerebral cortex. It is a narrow band located in the isthmus of cingulate gyrus adjacent to the fasciolar gyrus internally. It is bounded externally by the granular retrolimbic area 29." [BTO:0003979]
synonym: "ectosplenial area 26" RELATED [BTO:0003979, Wikipedia:Brodmann_area_26]
xref: BTO:0003979
xref: FMA:68623
xref: Wikipedia:Brodmann_area_26
is_a: UBERON:0002619 ! regional part of cerebral cortex
[Term]
id: UBERON:0004719
name: arcuate vein
def: "The arcuate vein is a vessel of the renal circulation. It is located at the border of the renal cortex and renal medulla." [Wikipedia:Arcuate_vein]
synonym: "arcuate veins" RELATED [Wikipedia:Arcuate_vein]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7e/Kidney_PioM.png/200px-Kidney_PioM.png
xref: MA:0002593
xref: Wikipedia:Arcuate_vein
is_a: UBERON:0003517 ! kidney blood vessel
[Term]
id: UBERON:0004720
name: cerebellar vermis
def: "Part of the structure of animal brains, the cerebellar vermis is a narrow, wormlike structure between the hemispheres of the cerebellum." [Wikipedia:Cerebellar_vermis]
synonym: "cerebellum vermis" EXACT [FMA:76928]
synonym: "vermis" RELATED [Wikipedia:Cerebellar_vermis]
synonym: "vermis of cerebellum" EXACT [FMA:76928]
xref: FMA:76928
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/CerebellumDiv.png/200px-CerebellumDiv.png
xref: MA:0000202
xref: NIF_GrossAnatomy:birnlex_1175
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex
relationship: part_of UBERON:0002037 ! cerebellum
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0004721
name: crista ampullaris
def: "The crista ampullaris is the sensory organ of rotation located in the semicircular canal of the inner ear. The function of the crista ampullaris is to sense angular acceleration and deceleration." [Wikipedia:Crista_ampullaris]
synonym: "ampullary crest" RELATED [MA:0002771]
synonym: "cristae ampullares" RELATED [Wikipedia:Crista_ampullaris]
xref: FMA:77714
xref: MA:0002771
xref: Wikipedia:Crista_ampullaris
is_a: UBERON:0000020 ! sense organ
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001840 ! semicircular canal
[Term]
id: UBERON:0004722
name: deep cervical lymph nodes
def: "The deep cervical lymph nodes are a group of cervical lymph nodes found near the internal jugular vein. They can be divided into upper and lower groups, or superior and inferior groups. Alternatively, they can be divided into deep anterior cervical lymph nodes and deep lateral cervical lymph nodes. They can also be divided into three groups: superior deep jugular, middle deep jugular, and 'inferior deep jugular'." [Wikipedia:Deep_cervical_lymph_nodes]
synonym: "lower jugular nodes" RELATED [Wikipedia:Deep_cervical_lymph_nodes]
synonym: "middle jugular nodes" RELATED [Wikipedia:Deep_cervical_lymph_nodes]
synonym: "upper jugular nodes" RELATED [Wikipedia:Deep_cervical_lymph_nodes]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Illu_lymph_chain02.jpg/200px-Illu_lymph_chain02.jpg
xref: MA:0002885
xref: Wikipedia:Deep_cervical_lymph_nodes
is_a: UBERON:0002429 ! cervical lymph node
[Term]
id: UBERON:0004723
name: interlobular artery
def: "The first set of renal bloodvessels, the interlobular arteries (or cortical radiate arteries, or cortical radial arteries), are given off at right angles from the side of the arcuate arteries looking toward the cortical substance, and pass directly outward between the medullary rays to reach the fibrous tunic, where they end in the capillary network of this part. These vessels do not anastomose with each other, but form what are called end-arteries. In their outward course they give off lateral branches; these are the afferent vessels for the renal corpuscles; they enter the capsule, and end in the glomerulus. From each tuft the corresponding efferent vessel arises, and, having made its egress from the capsule near to the point where the afferent vessel enters, breaks up into a number of branches, which form a dense plexus within Bowman's capsule." [Wikipedia:Interlobular_arteries]
synonym: "cortical radial arteries" RELATED [Wikipedia:Interlobular_arteries]
synonym: "interlobular" RELATED [Wikipedia:Interlobular_arteries]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
xref: MA:0002584
xref: Wikipedia:Interlobular_arteries
is_a: UBERON:0003517 ! kidney blood vessel
is_a: UBERON:0003644 ! kidney arterial blood vessel
[Term]
id: UBERON:0004724
name: medial palpebral ligament
def: "The medial palpebral ligament (tendo oculi), about 4 mm. in length and 2 mm. in breadth, is attached to the frontal process of the maxilla in front of the lacrimal groove. Crossing the lacrimal sac, it divides into two parts, upper and lower, each attached to the medial end of the corresponding tarsus. As the ligament crosses the lacrimal sac, a strong aponeurotic is given off from its posterior surface; this expands over the sac, and is attached to the posterior lacrimal crest." [Wikipedia:Medial_palpebral_ligament]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/6/6f/Gray894.png/200px-Gray894.png
xref: MA:0001258
xref: Wikipedia:Medial_palpebral_ligament
is_a: UBERON:0000211 ! ligament
[Term]
id: UBERON:0004725
name: piriform cortex
def: "In anatomy of animals, the piriform cortex, or pyriform cortex is a region in the brain. The piriform cortex is part of the rhinencephalon situated in the telencephalon. The function of the piriform cortex relates to olfaction, which is the perception of smells. Sometimes called the olfactory cortex, olfactory lobe or paleopallium, piriform cortical regions are present in the brains of amphibians, reptiles and mammals. The piriform cortex is among three areas that emerge in the telencephalon of amphibians, situated caudally to a dorsal area, which is caudal to a hippocampal area. Farther along the phylogenic timeline, the telencephalic bulb of reptiles as viewed in a cross section of the transverse plane extends with the archipallial hippocampus folding toward the midline and down as the dorsal area begins to form a recognizable cortex. As mammalian cerebrums developed, volume of the dorsal cortex increased in slightly greater proportion, as compared proportionally with increased overall brain volume, until it enveloped the hippocampal regions. Recognized as neopallium or neocortex, enlarged dorsal areas envelop the paleopallial piriform cortex in humans and Old World monkeys. Among taxonomic groupings of mammals, the piriform cortex and the olfactory bulb become proportionally smaller in the brains of phylogenically younger species. The piriform cortex occupies a greater proportion of the overall brain and of the telencephalic brains of insectivores than in primates. The piriform cortex continues to occupy a consistent albeit small and declining proportion of the increasingly large telencephalon in the most recent primate species while the volume of the olfactory bulb becomes less in proportion. It is Brodmann area 27." [Wikipedia:Piriform_cortex]
synonym: "piriform area" RELATED [BTO:0002651, MA:0000978]
synonym: "primary olfactory cortex" RELATED [Wikipedia:Piriform_cortex]
synonym: "pyriform cortex" RELATED [Wikipedia:Piriform_cortex]
synonym: "pyriform lobe" RELATED [Wikipedia:Piriform_cortex]
xref: BTO:0002651
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Human_brainstem_anterior_view_2_description.JPG/200px-Human_brainstem_anterior_view_2_description.JPG
xref: MA:0000978
xref: NIF_GrossAnatomy:birnlex_2706
xref: Wikipedia:Piriform_cortex
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0002894 ! olfactory cortex
[Term]
id: UBERON:0004726
name: vasa recta
def: "In the blood supply of the kidney, the vasa recta renis (or straight arteries of kidney, or straight arterioles of kidney) form a series of straight capillaries in the medulla. They lie parallel to the loop of Henle. These vessels branch off the efferent arterioles of juxtamedullary nephrons (those nephrons closest to the medulla), enter the medulla, and surround the loop of Henle." [Wikipedia:Vasa_recta]
comment: TODO - is this a vein or set of veins? the plural would presumably be rectae - FMA has the signular as exact synonym
synonym: "arteria recta" RELATED [Wikipedia:Vasa_recta]
synonym: "arteriae rectae" RELATED [Wikipedia:Vasa_recta]
synonym: "arteriolae recti" RELATED [Wikipedia:Vasa_recta]
synonym: "renal medullary capillary" EXACT [EMAPA:30043]
synonym: "set of straight arterioles of kidney" EXACT [FMA:72006]
synonym: "vasa recta of kidney" EXACT [FMA:72006]
synonym: "vasa rectae" RELATED [Wikipedia:Vasa_recta]
xref: EMAPA:30043
xref: FMA:72006
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/21/Kidney_nephron.png/200px-Kidney_nephron.png
xref: MA:0002595
is_a: UBERON:0001140 ! renal vein
[Term]
id: UBERON:0004727
name: cochlear nerve
def: "a nerve in the head that carries signals from the cochlea of the inner ear to the brain. It is part of the vestibulocochlear nerve, the 8th cranial nerve which is found in higher vertebrates; the other portion of the 8th cranial nerve is the vestibular nerve which carries spatial orientation information from the semicircular canals. The cochlear nerve is a sensory nerve, one which conducts to the brain information about the environment, in this case acoustic energy impinging on the tympanic membrane. The cochlear nerve arises from within the cochlea and extends to the brainstem, where its fibers make contact with the cochlear nucleus, the next stage of neural processing in the auditory system[WP]." [ISBN:Wikipedia\:Cochlear_nerve]
subset: uberon_slim
synonym: "auditory nerve" EXACT [FMA:53431]
synonym: "cochlear root of acoustic nerve" EXACT [FMA:53431]
synonym: "cochlear root of eighth cranial nerve" EXACT [FMA:53431]
synonym: "vestibulocochlear VIII nerve cochlear component" EXACT [MA:0001110]
xref: BTO:0003490
xref: EHDAA2:0002195
xref: FMA:53431
xref: GAID:723
xref: HOG:0001182
xref: MA:0001110
xref: ncithesaurus:Cochlear_Nerve
xref: OpenCyc:Mx4rwIhQfZwpEbGdrcN5Y29ycA
is_a: UBERON:0001785 ! cranial nerve
relationship: branch_of UBERON:0001648 ! vestibulocochlear nerve
[Term]
id: UBERON:0004728
name: amphibian larval stage
def: "Amphibian larvae, sometimes called pollywogs or tadpoles, hatch from eggs and begin to grow limbs and other adult physical features at various times, depending on the species, before they metamorphose into the adult form." [GO:0002117]
synonym: "polliwog" NARROW SENSU [Wikipedia:Larva]
synonym: "polliwog stage" NARROW SENSU [Wikipedia:Larva]
synonym: "tadpole" NARROW SENSU [Wikipedia:Larva]
synonym: "tadpole stage" NARROW SENSU [Wikipedia:Larva]
xref: XAO:1000008
is_a: UBERON:0000069 ! larval stage
[Term]
id: UBERON:0004729
name: nematode larval stage
def: "Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew." [GO:0002119]
xref: WBls:0000023
is_a: UBERON:0000069 ! larval stage
[Term]
id: UBERON:0004730
name: instar larval stage
def: "This begins with the newly hatched first-instar larva, through its maturation to the end of the last larval stage. An example of this process is found in Drosophila melanogaster." [GO:0002168]
xref: FBdv:00005336
is_a: UBERON:0000069 ! larval stage
[Term]
id: UBERON:0004731
name: neuromere
def: "A segment of the developing neural tube[MP]. A metameric segment of the central nervous system[ZFA]. morphologically or molecularly defined transient segments of the early developing brain. Rhombomeres are such segments that make up the rhombencephalon or hindbrain. [WP]." [MP:0003208, Wikipedia:Neuromere]
comment: WP says: "More controversially, some argue that there exist early developmental segments that give rise to structures of the midbrain (mesomeres) and forebrain (prosomeres).". Note that ZFA has spinal neuromere
synonym: "neural segment" EXACT []
synonym: "neural tube segment" EXACT []
synonym: "neuromere" EXACT []
xref: TAO:0001328
xref: ZFA:0001328
is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system
relationship: part_of UBERON:0001049
intersection_of: UBERON:0004732 ! segmental subdivision of nervous system
intersection_of: part_of UBERON:0001049 ! neural tube
created_by: Melissa Haendel
creation_date: 2009-06-18T09:00:04Z
[Term]
id: UBERON:0004732
name: segmental subdivision of nervous system
def: "An organ segment that is part of a nervous system [Obol]." [OBOL:automatic]
synonym: "neuromere" RELATED [FBbt:00005140]
xref: FBbt:00005140
is_a: UBERON:0000063 ! implied link automatically realized ! organ segment
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
relationship: part_of UBERON:0001016
intersection_of: UBERON:0000063 ! organ segment
intersection_of: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0004733
name: segmental subdivision of hindbrain
def: "An organ segment that is part of a hindbrain [Obol]." [OBOL:automatic]
synonym: "hindbrain segment" EXACT [FMA:61998]
synonym: "segment of hindbrain" EXACT [FMA:61998]
xref: FMA:61998
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
is_a: UBERON:0004732 ! implied link automatically realized ! segmental subdivision of nervous system
relationship: part_of UBERON:0002028
intersection_of: UBERON:0000063 ! organ segment
intersection_of: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0004734
name: gastrula
def: "Organism at the gastrula stage." [Wikipedia:Gastrula]
xref: BTO:0001403
xref: GAID:1302
xref: MIAA:0000179
is_a: UBERON:0000922 ! embryo
relationship: existence_starts_and_ends_during UBERON:0000109 ! gastrula stage
[Term]
id: UBERON:0004735
name: archenteron
def: "The cavity of a gastrula forming a primitive gut[BTO]. The primitive gut that forms during gastrulation in the developing blastula. It develops into the digestive tract of an animal. As primary mesenchyme cells detach from the vegetal pole in the blastula and enter the fluid filled cavity in the center (the blastocoel), the remaining cells at the vegetal pole flatten to form a vegetal plate. This buckles inwards towards the blastocoel in a process called invagination. The cells continue to be rearranged until the shallow dip formed by invagination transforms into a deeper, narrower pouch formed by the gastrula's endoderm. This narrowing and lengthening of the archenteron is driven by convergent extension. The open end of the archenteron is called the blastopore. The filopodia--thin fibers formed by the mesenchyme cells--found in a late gastrula contract to drag the tip of the archenteron across the blastocoel. The endoderm of the archenteron will fuse with the ectoderm of the blastocoel wall. At this point gastrulation is complete, and the gastrula has a functional digestive tube. The indentation that is actually formed is called the lip of the blastopore in amphibians and fish, and the primitive streak in birds and mammals. Each is controlled by the dorsal blastopore, and primitive node (also known as Hensen's node), respectively." [Wikipedia:Archenteron]
synonym: "gastrocoel" RELATED [XAO:0000092]
xref: BTO:0001696
xref: XAO:0000092
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0004734 ! gastrula
[Term]
id: UBERON:0004736
name: metanephric glomerulus
def: "glomerulus of the mature vertebrate kidney, or metanephros." [GO:0072224]
synonym: "glomerulus of metanephros" EXACT []
xref: HOG:0001242
is_a: UBERON:0000074 ! implied link automatically realized ! renal glomerulus
relationship: part_of UBERON:0000081
intersection_of: UBERON:0000074 ! renal glomerulus
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0004737
name: metanephric collecting duct
def: "A collecting duct of renal tubule that is part of a metanephros [Obol]." [OBOL:automatic]
synonym: "collecting duct of metanephros" EXACT []
xref: HOG:0000983
is_a: UBERON:0001232 ! implied link automatically realized ! collecting duct of renal tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001232 ! collecting duct of renal tubule
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0004738
name: metanephric juxtaglomerular apparatus
def: "juxtaglomerular apparatus of the mature vertebrate kidney, or metanephros." [GO:0072206]
synonym: "juxtaglomerular apparatus of metanephros" EXACT []
is_a: UBERON:0002303 ! implied link automatically realized ! juxtaglomerular apparatus
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0000081
intersection_of: UBERON:0002303 ! juxtaglomerular apparatus
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0004739
name: pronephric glomerulus
def: "glomerulus of the pronephros." [OBOL:automatic]
synonym: "glomerulus of pronephros" EXACT []
xref: HOG:0001237
xref: ZFA:0001557
is_a: UBERON:0000074 ! implied link automatically realized ! renal glomerulus
relationship: part_of UBERON:0002120
intersection_of: UBERON:0000074 ! renal glomerulus
intersection_of: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0004740
name: basibranchial
def: "Median elements that are ossified within copulae and are not assigned to a specific branchial arch number. They articulate posterolaterally with the hypobranchials." [ZFA:0000170]
synonym: "basibranchials" EXACT [ZFA:0000170]
synonym: "copula I" RELATED [AAO:0000686]
xref: AAO:0000686
xref: ZFA:0000170
is_a: UBERON:0002513 ! endochondral bone
[Term]
id: UBERON:0004741
name: cleithrum
def: "Transversely oriented bone connecting the occipital region of the skull dorsally and pectoral girdle ventrally; appears near the end of embryogenesis." [ZFA:0000184]
synonym: "cleithra" EXACT [ZFA:0000184]
xref: AAO:0000750
xref: ZFA:0000184
is_a: UBERON:0002428 ! implied link automatically realized ! limb bone
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003459 ! implied link automatically realized ! chest bone
relationship: part_of UBERON:0001421 ! pectoral girdle
[Term]
id: UBERON:0004742
name: dentary
def: "Dermal bone that forms the antero-lateral part of the lower jaw. It first appears around the anterior end of Meckel's cartilage (5.1 mm NL). In the adult, the dentary meets its counterpart anteriorly at the mandibular symphysis. The dentary abuts the retroarticular posteriorly, and it surround the anguloarticular. The dentary is connected to the maxilla by the maxillo-mandibular ligament. Dentary teeth are absent in cypriniforms, but are present in other ostariophysans." [Wikipedia:Dentary#In_other_vertebrates, ZFA:0000191]
synonym: "dentale" RELATED [AAO:0000124]
synonym: "dentary bone" EXACT [ZFA:0000191]
synonym: "os dentale" RELATED [AAO:0000124]
synonym: "sur-angulaire" RELATED [AAO:0000124]
xref: AAO:0000124
xref: HOG:0001022
xref: ZFA:0000191
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone
is_a: UBERON:0004768 ! implied link automatically realized ! bone of lower jaw
relationship: part_of UBERON:0001710 ! lower jaw
relationship: part_of UBERON:0003113 ! dermatocranium
[Term]
id: UBERON:0004743
name: coracoid
def: "Endochondral bone of the pectoral girdle that develops from the scapulocoracoid cartilage and occupies the ventral part of the pectoral girdle. The coracoid is a paired bone that articulates approximately dorsally with the cleithrum, scapula and mesocoracoid." [ZFA:0000332]
synonym: "clavicula" RELATED [AAO:0000764]
synonym: "clavicula posterior" RELATED [AAO:0000764]
synonym: "clavicula vera" RELATED [AAO:0000764]
synonym: "coracoideum" RELATED [AAO:0000764]
synonym: "coracoidien" RELATED [AAO:0000764]
synonym: "coracoids" EXACT [ZFA:0000332]
synonym: "pars sternalis scapulae" RELATED [AAO:0000764]
synonym: "scapulocoracoid" RELATED [ZFA:0000332]
xref: AAO:0000764
xref: ZFA:0000332
is_a: UBERON:0002428 ! implied link automatically realized ! limb bone
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003459 ! implied link automatically realized ! chest bone
relationship: part_of UBERON:0001421 ! pectoral girdle
[Term]
id: UBERON:0004744
name: anguloarticular
def: "The anguloarticular is a compound bone that results of the fusion of the dermal angular and the cartilaginous articular and forms the posterior part of the lower jaw. The dermal part ossifies initially on the posterolateral surface of Meckel's cartilage near the articulation with the quadrate (5.5 mm NL). A posterior process forms, creating a synovial joint with the quadrate." [ZFA:0000467]
synonym: "angulaire" RELATED [AAO:0000028]
synonym: "angulare" RELATED [AAO:0000028]
synonym: "articular" EXACT [ZFA:0000467]
synonym: "dermarticulare" RELATED [AAO:0000028]
synonym: "goniale" RELATED [AAO:0000028]
synonym: "operculo angulaire" RELATED [AAO:0000028]
xref: AAO:0000028
xref: ZFA:0000467
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone
is_a: UBERON:0004768 ! implied link automatically realized ! bone of lower jaw
relationship: develops_from UBERON:0001086 ! articular cartilage
relationship: part_of UBERON:0001710 ! lower jaw
relationship: part_of UBERON:0003113 ! dermatocranium
[Term]
id: UBERON:0004745
name: parasphenoid
def: "Long, unpaired median dermal bone that runs almost the entire length of the cranium. Contacts the prevomer anteriorly, and the prootic and basioccipital posteriorly. Anteriorly the parasphenoid is a long, thin bone that widens abruptly at the point of contact with the prootic." [ZFA:0000561]
synonym: "keilbein" RELATED [AAO:0000385]
synonym: "os parasphenoidale" RELATED [AAO:0000385]
synonym: "os sphenoideum" RELATED [AAO:0000385]
synonym: "parabasale" RELATED [AAO:0000385]
xref: AAO:0000385
xref: ZFA:0000561
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone
relationship: part_of UBERON:0001697 ! orbit
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0003111 ! sphenoid region
relationship: part_of UBERON:0003112 ! olfactory region
relationship: part_of UBERON:0003113 ! dermatocranium
[Term]
id: UBERON:0004746
name: prootic
def: "Paired cartilage bone that contacts the pterosphenoid anteriorly, the sphenotic and the pterotic dorsally, and the epiotic and basioccipital posteriorly. The parasphenoid covers the ventral region of each prootic, the upper edge of which contributes to the hyomandibular facet. Bear foramina that accommodate branches of the trigeminal and facial nerves." [ZFA:0000575]
synonym: "prootics" EXACT [ZFA:0000575]
xref: AAO:0000514
xref: ZFA:0000575
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone
relationship: develops_from UBERON:0004637 ! otic capsule
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
relationship: part_of UBERON:0003110 ! otic region
[Term]
id: UBERON:0004747
name: supraoccipital
alt_id: UBERON:0005237
def: "Large shield-shaped unpaired median cartilage bone that contact the parietal anteriorly, and the exocciptial and epiotic laterally. Forms the posterodorsal most point of the cranium. The supraoccipital usually bears a crest that extends posterodorsally." [ZFA:0000595]
synonym: "supraoccipital bone" EXACT [MA:0001474]
xref: AAO:0000588
xref: HOG:0001150
xref: MA:0001474
xref: ZFA:0000595
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0004748
name: autopalatine
def: "The cartilaginous autopalatine forms from the anterior palatoquadrate arch. The first sign of ossification is visible at the anterior tip where it articulates with the maxilla (7.6 mm). In adults there are three processes at the anterior portion of the palatine: a ventromedial process, which forms the socket of the small ball- and- socket joint with the preethmoid; a dorsomedial process, which is connected by a short ligament to the ethmoid; and a lateral process, which extends toward the first infraorbital. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms)." [ZFA:0000620]
synonym: "neopalatine" BROAD [AAO:0000372]
synonym: "palatine" EXACT [ZFA:0000620]
xref: AAO:0000372
xref: ZFA:0000620
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone
relationship: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0004749
name: blastodisc
def: "a small, circular, white spot (approximately 2-3 mm across) on the surface of the yellow yolk of an egg that has been laid. The nucleus of the egg is in the germinal disc." [Wikipedia:Germinal_disc]
synonym: "germinal disc" EXACT [Wikipedia:Germinal_disc]
xref: AAO:0000043
xref: ZFA:0001175
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0004750
name: blastoderm
def: "A layer of cells formed at one pole of macrolecithal eggs such as the yolky egg of birds. The yolk prevents the division from taking place through the egg, resulting in meroblastic cleavage during the many cleavage divisions. At the animal pole (containing less yolk than the vegetal pole), the zygote divides and subdivides, forming the blastoderm, which gradually spreads around the yolk and forms the embryo. The blastoderm is composed of two layers, the epiblast and the hypoblast, which enclose the fluid-filled blastocoel cavity." [Wikipedia:Blastoderm]
xref: AAO:0000042
xref: ZFA:0001176
is_a: UBERON:0002050 ! embryonic structure
relationship: has_part UBERON:0000089 ! hypoblast
relationship: has_part UBERON:0002532 ! epiblast
[Term]
id: UBERON:0004751
name: hypohyal bone
def: "Hypohyals are the most anterior of the bilaterally paired ventral hyoid arch elements. The two hypohyals in zebrafish ossify at the anterodorsal and anteroventral tips of the ceratohyal cartilages; no separate hypohyal cartilages are present." [ZFA:0001381]
xref: AAO:0000958
xref: ZFA:0001381
is_a: UBERON:0002513 ! endochondral bone
[Term]
id: UBERON:0004752
name: palatoquadrate cartilage
synonym: "dorsal mandibular cartilage" EXACT [ZFA:0001399]
synonym: "pterygoquadrate" EXACT [ZFA:0001399]
synonym: "quadrate cartilage" EXACT [ZFA:0001399]
xref: AAO:0000524
xref: ZFA:0001399
is_a: UBERON:0003933 ! cranial cartilage
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001709 ! upper jaw
relationship: part_of UBERON:0003108 ! suspensorium
[Term]
id: UBERON:0004753
name: scapulocoracoid
def: "The cartilage from which both the scapula and coracoid develop." [ZFA:0001455]
synonym: "coraco-scapular cartilage" EXACT [ZFA:0001455]
xref: AAO:0000781
xref: ZFA:0001455
is_a: UBERON:0002418 ! cartilage
is_a: UBERON:0003572 ! implied link automatically realized ! chest connective tissue
is_a: UBERON:0003588 ! implied link automatically realized ! forelimb connective tissue
relationship: part_of UBERON:0001421 ! pectoral girdle
[Term]
id: UBERON:0004754
name: foramen ovale of heart
def: "In the fetal heart, the foramen ovale (also ostium secundum of Born or falx septi) allows blood to enter the left atrium from the right atrium. It is one of two fetal cardiac shunts, the other being the ductus arteriosus (which allows blood that still escapes to the right ventricle to bypass the pulmonary circulation). Another similar adaptation in the fetus is the ductus venosus. In most individuals, the foramen ovale (pronounced /fɒˈreɪmən oʊˈvɑːli/) closes at birth. It later forms the fossa ovalis[WP]." [Wikipedia:Foramen_ovale_(heart)]
synonym: "Bottalo's foramen" EXACT [FMA:86043]
synonym: "falx septi" EXACT [Wikipedia:Foramen_ovale_(heart)]
synonym: "foramen ovale" NARROW [galen:ForamenOvale, MA:0001873]
synonym: "foramen ovale cordis" EXACT [galen:ForamenOvaleCordis]
synonym: "ostium secundum of Born" EXACT [Wikipedia:Foramen_ovale_(heart)]
xref: EHDAA2:0000551
xref: FMA:86043
xref: galen:ForamenOvale
xref: galen:ForamenOvaleCordis
xref: MA:0001873
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002085 ! interatrial septum
[Term]
id: UBERON:0004755
name: skeletal tissue
comment: Four classes of mineralized tissues are found in vertebrates: bone, cartilage, dentine, and enamel. We think of cartilage and bone as skeletal tissues and of enamel and dentine as dental tissues, but enamel and dentine arose evolutionarily together with bone as skeletal tissues in the dermal skeleton (exoskeleton) of early vertebrates. Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone. Cartilage, on the other hand, provided the basis for the second vertebrate skeletal system, the endoskeleton (Smith and Hall, 1990; Hall, 1998a,b). some invertebrate skeletal tissues have surprisingly bone-like features. Examples include chondrocytes interconnected by cell processes in cephalopod cartilages (Cole and Hall, 2004a,b), and the calcium phosphate layer in the shells of brachiopods (Rodland et al., 2003). However, neither bone nor mineralized cartilage have been found in invertebrates
synonym: "mineralized tissue" EXACT []
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0004756
name: dermal skeletal element
def: "dermis-derived entity that is made of skeletal tissue." []
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004765 ! implied link automatically realized ! skeletal element
relationship: develops_from UBERON:0002067
relationship: has_part UBERON:0004755
intersection_of: UBERON:0004765 ! skeletal element
intersection_of: develops_from UBERON:0002067 ! dermis
intersection_of: has_part UBERON:0004755 ! skeletal tissue
[Term]
id: UBERON:0004757
name: rectal gland
def: "An evagination of the terminal portion of the intestine of Elasmobranchii. Function formerly thought to be related to digestion or excretion, but now considered to secrete high concentrations of excess sodium chloride. Found also in the coelacanth Latimeria chalumnae[BTO]." [BTO:0001157]
comment: does not include FMA:15724 Rectal gland // epithelial tissue gland - concentrates & secretes excess Na & Cl in sharks. large shark liver produces copious amounts of urea, making the shark hyperosmotic to seawater, & thus a shark acts like a fresh water fish, constantly gaining water. Excess salts are concentrated by the rectal gland and secreted
xref: BTO:0001157
is_a: UBERON:0002530 ! gland
is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut
is_a: UBERON:0004758 ! implied link automatically realized ! salt gland
relationship: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0004758
name: salt gland
def: "an organ for excreting excess salts. It is found in elasmobranchs, seabirds, and some reptiles. In sharks, salt glands are found in the rectum, but in birds and reptiles, they are found in or on the skull, in the area of the eyes, nostrils or mouth. In crocodiles, the salt is excreted through the tongue. Such glands work by active transport via sodium-potassium pump that moves salt from the blood into the gland, where it can be excreted as a concentrated solution. Salt glands function to keep salt balance, and allow marine vertebrates to drink seawater[WP]." [Wikipedia:Salt_gland]
subset: functional_classification
xref: GAID:1235
is_a: UBERON:0002530 ! implied link automatically realized ! gland
[Term]
id: UBERON:0004759
name: salt gland of cranial region
def: "A salt gland located in the cranium or cranial region." [OBOL:automatic]
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004758 ! implied link automatically realized ! salt gland
[Term]
id: UBERON:0004760
name: gland of anal canal
def: "A gland that is part of an anal canal [Obol]." [OBOL:automatic]
synonym: "anal gland" RELATED []
synonym: "gland of anal canal" EXACT [OBOL:automatic]
synonym: "gland of anus" RELATED []
synonym: "rectal gland" RELATED []
xref: FMA:15720
xref: FMA:15724
is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut
relationship: part_of UBERON:0000159
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000159 ! anal canal
[Term]
id: UBERON:0004761
name: cartilaginous neurocranium
def: "the primitive cartilagionous skeletal structure of the fetal skull that grows to envelop the rapidly growing embyonic brain. In humans, the chondrocranium begins forming at 28 days from mesenchymal condensations and is fully formed between week 7 and 9 of fetal development. While the majority of the chondrocranium is succeeded by the bony skull in most higher vertebrates, some components do persist into adulthood.[1] In Cartilagious fishes and Agnathans, the chondrocranium persist throughout life.[2] Embryologically, the chondrocranium represent the basal cranial structure, and lay the base for the formation of the endocranium in higher vertebrates[WP]." [Wikipedia:Chondrocranium]
comment: note that in contrast to chondrocranium, this structure is entirely cartiliginous. In Chondricthyes this is the same as the neurocranium. FMA:76621 is an undefined fetal structure, so we assume the correct placement is here. Note that this is distinct from MA:0000317 which is the uberon:neurocranium (the part of the cranium that encloses the brain)
synonym: "cartilaginous chondocranium" EXACT []
synonym: "cartilaginous skull" RELATED []
synonym: "cartiligionous skeletal structure of skull" EXACT []
synonym: "chondocranium" RELATED [Wikipedia:Chondrocranium]
synonym: "neurocranium" RELATED SENSU []
xref: AAO:0000094
xref: EHDAA:6031
xref: FMA:76621
xref: ncithesaurus:Chondrocranium
xref: XAO:0003059
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004765 ! skeletal element
relationship: develops_from UBERON:0003104 ! mesenchyme
relationship: has_part UBERON:0002418 ! cartilage
[Term]
id: UBERON:0004763
name: endochondral bone tissue
def: "Replacement bone tissue that forms within cartilage[TAO]. Endochondral ossification is the formation of bone by the replacement of cartilage tissue with mineralized bone[GO]. cartilage is present during endochondral ossification. It is also an essential process during the rudimentary formation of long bones, the growth of the length of long bones, and the natural healing of bone fractures[WP]." [GO:0001958, Wikipedia:Endochondral_bone]
comment: note the distinction between endochondral bone and endochondral bone tissue. Some bones may be a mixture of both tissue types. The MA class most likely refers to a tissue type
subset: uberon_slim
synonym: "replacement bone" BROAD [ZFA:0001628]
xref: MA:0002836
is_a: UBERON:0002481 ! implied link automatically realized ! bone tissue
disjoint_from: UBERON:0004764 ! intramembranous bone tissue
relationship: part_of UBERON:0002513 ! endochondral bone
relationship: replaces UBERON:0002418 ! cartilage
[Term]
id: UBERON:0004764
name: intramembranous bone tissue
def: "Bone tissue that forms directly within mesenchyme, and does not replace other tissues[TAO]. Intramembranous ossification is the formation of bone in which osteoblasts secrete a collagen-proteoglycan matrix that binds calcium salts and becomes calcified[GO]. Intramembranous ossification is the way flat bones and the shell of a turtle are formed[GO]. Unlike endochondral ossification, cartilage is not present during intramembranous ossification[WP]." [GO:0001957, Wikipedia:Intramembranous_ossification]
comment: note the distinction between intramembranous bone and intramembranous bone tissue. Some bones may be a mixture of both tissue types. The MA class most likely refers to a tissue type.
xref: MA:0002837
is_a: UBERON:0002481 ! implied link automatically realized ! bone tissue
relationship: develops_from UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0002514 ! intramembranous bone
[Term]
id: UBERON:0004765
name: skeletal element
def: "Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [UBERON:cjm]
comment: TODO - add more general class for other kinds of mineralized tissue
subset: uberon_slim
xref: galen:SkeletalStructure
xref: TAO:0001890
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0004766
name: cranial bone
def: "A bone that is part of a cranium." [UBERON:automatic]
synonym: "cranium bone" EXACT [UBERON:automatic]
is_a: UBERON:0000032 ! implied link automatically realized ! cranial structure
is_a: UBERON:0003457 ! implied link automatically realized ! head bone
relationship: part_of UBERON:0003128
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0004767
name: vomerine tooth
xref: AAO:0000635
xref: TAO:0001631
is_a: UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0004768
name: bone of lower jaw
def: "Any bone that is part of the lower jaw." [OBOL:automatic]
comment: this is a grouping class which will group analagous structures such as the dentary and the mandible
synonym: "bone of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "bone organ of lower jaw" EXACT [OBOL:automatic]
synonym: "bone organ of ventral mandibular arch" EXACT [OBOL:automatic]
synonym: "lower jaw bone" EXACT []
synonym: "lower jaw bone organ" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch bone" EXACT [OBOL:automatic]
synonym: "ventral mandibular arch bone organ" EXACT [OBOL:automatic]
is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone
relationship: part_of UBERON:0001710
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0004769
name: diaphysis
def: "Subdivision of long bone which forms the part of the bone between the two epiphyses; together with other the subdivisions of long bone, it constitutes the long bone. Examples: diaphysis of humerus, diaphysis of femur[FMA]. the main or mid section (shaft) of a long bone. It is made up of cortical bone and usually contains bone marrow and adipose tissue (fat)." [Wikipedia:Diaphysis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "body of long bone" EXACT []
synonym: "long bone diaphysis" EXACT []
synonym: "shaft of long bone" EXACT []
xref: FMA:24013
xref: GAID:189
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/94/Illu_long_bone.jpg/200px-Illu_long_bone.jpg
xref: MA:0002803
is_a: UBERON:0005055 ! zone of long bone
[Term]
id: UBERON:0004770
name: articular system
synonym: "set of all joints" RELATED []
synonym: "set of all joints of body" EXACT [FMA:23878]
xref: FMA:23878
is_a: UBERON:0000480 ! anatomical group
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001434 ! skeletal system
[Term]
id: UBERON:0004771
name: posterior nasal aperture
def: "Opening/conduit between the nasal cavity and the nasopharynx[AAO] The choanae are separated by the vomer[WP]." [AAO:0000093, Wikipedia:Posterior_nasal_apertures]
comment: Fish don't have choanae, instead they have two pairs of external nostrils[WP] In addition to tetrapods, the lungfish has internal nostrils too. TODO: check part_of vs adjacent_to nasal cavity
synonym: "choana" EXACT [Wikipedia:Choane, XAO:0000277]
synonym: "internal naris" EXACT [MA:0001323]
xref: AAO:0000093
xref: EHDAA:7842
xref: EHDAA2:0000242
xref: FMA:53143
xref: HOG:0000545
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/8/87/Gray855.png/200px-Gray855.png
xref: MA:0001323
xref: XAO:0000277
is_a: UBERON:0000003 ! implied link automatically realized ! naris
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: adjacent_to UBERON:0001728
relationship: part_of UBERON:0001707
intersection_of: UBERON:0000003 ! naris
intersection_of: adjacent_to UBERON:0001728 ! nasopharynx
intersection_of: part_of UBERON:0001707 ! nasal cavity
[Term]
id: UBERON:0004772
name: eyelid tarsus
def: "The tarsi (tarsal plates) are two comparatively thick, elongated plates of dense connective tissue, about 2.5 cm. in length; one is found in each eyelid, and contributes to its form and support. They directly abut the lid margins." [Wikipedia:Tarsus_(eyelids)]
synonym: "tarsal plate" EXACT []
synonym: "tarsal plate" EXACT [FMA:59086]
synonym: "tarsal plate of eyelid" EXACT [FMA:59086]
xref: FMA:59086
xref: MA:0000270
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0003581 ! implied link automatically realized ! eyelid connective tissue
disjoint_from: UBERON:0004454 ! tarsus
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0004773
name: superior eyelid tarsus
def: "An eyelid tarsus that is part of a upper eyelid [Obol]." [OBOL:automatic]
synonym: "superior tarsal plate" EXACT [FMA:59087]
synonym: "superior tarsus of eyelid" EXACT []
synonym: "tarsal plate of upper eyelid" EXACT [FMA:59087]
synonym: "tarsus of upper eyelid" EXACT []
xref: FMA:59087
xref: MA:0001260
is_a: UBERON:0004772 ! implied link automatically realized ! eyelid tarsus
relationship: part_of UBERON:0001712
intersection_of: UBERON:0004772 ! eyelid tarsus
intersection_of: part_of UBERON:0001712 ! upper eyelid
[Term]
id: UBERON:0004774
name: inferior eyelid tarsus
def: "An eyelid tarsus that is part of a lower eyelid [Obol]." [OBOL:automatic]
synonym: "inferior tarsal plate" EXACT [FMA:59088]
synonym: "inferior tarsus of eyelid" EXACT []
synonym: "tarsal plate of lower eyelid" EXACT [FMA:59088]
synonym: "tarsus of lower eyelid" EXACT []
xref: FMA:59088
xref: MA:0001257
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004772 ! implied link automatically realized ! eyelid tarsus
relationship: part_of UBERON:0001713
intersection_of: UBERON:0004772 ! eyelid tarsus
intersection_of: part_of UBERON:0001713 ! lower eyelid
[Term]
id: UBERON:0004775
name: outer renal medulla vasa recta
def: "A vasa recta that is part of a outer medulla of kidney [Obol]." [OBOL:automatic]
synonym: "outer medulla of kidney vasa recta" EXACT [OBOL:automatic]
synonym: "outer zone of medulla of kidney vasa recta" EXACT [OBOL:automatic]
synonym: "outer zone of renal medulla vasa recta" EXACT [OBOL:automatic]
synonym: "vasa recta of outer medulla of kidney" EXACT [OBOL:automatic]
synonym: "vasa recta of outer renal medulla" EXACT [OBOL:automatic]
synonym: "vasa recta of outer zone of medulla of kidney" EXACT [OBOL:automatic]
synonym: "vasa recta of outer zone of renal medulla" EXACT [OBOL:automatic]
xref: MA:0002597
is_a: UBERON:0004726 ! implied link automatically realized ! vasa recta
relationship: part_of UBERON:0001293
intersection_of: UBERON:0004726 ! vasa recta
intersection_of: part_of UBERON:0001293 ! outer medulla of kidney
[Term]
id: UBERON:0004776
name: inner renal medulla vasa recta
def: "A vasa recta that is part of a inner medulla of kidney [Obol]." [OBOL:automatic]
synonym: "inner medulla of kidney vasa recta" EXACT [OBOL:automatic]
synonym: "inner zone of medulla of kidney vasa recta" EXACT [OBOL:automatic]
synonym: "inner zone of renal medulla vasa recta" EXACT [OBOL:automatic]
synonym: "set of inner region of renal pyramids vasa recta" EXACT [OBOL:automatic]
synonym: "vasa recta of inner medulla of kidney" EXACT [OBOL:automatic]
synonym: "vasa recta of inner renal medulla" EXACT [OBOL:automatic]
synonym: "vasa recta of inner zone of medulla of kidney" EXACT [OBOL:automatic]
synonym: "vasa recta of inner zone of renal medulla" EXACT [OBOL:automatic]
synonym: "vasa recta of set of inner region of renal pyramids" EXACT [OBOL:automatic]
xref: MA:0002596
is_a: UBERON:0004726 ! implied link automatically realized ! vasa recta
relationship: part_of UBERON:0001294
intersection_of: UBERON:0004726 ! vasa recta
intersection_of: part_of UBERON:0001294 ! inner medulla of kidney
[Term]
id: UBERON:0004777
name: respiratory system submucosa
def: "A submucosa that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "submucosa of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001822
is_a: UBERON:0000009 ! implied link automatically realized ! submucosa
relationship: part_of UBERON:0001004
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004778
name: larynx submucosa
def: "A submucosa that is part of a larynx [Obol]." [OBOL:automatic]
synonym: "submucosa of larynx" EXACT [OBOL:automatic]
xref: MA:0002728
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0004777 ! implied link automatically realized ! respiratory system submucosa
relationship: part_of UBERON:0001737
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0004779
name: respiratory system lamina propria
def: "A lamina propria that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius lamina propria" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of respiratory system" EXACT [OBOL:automatic]
synonym: "lamina propria of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "lamina propria of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system lamina propria mucosa" EXACT [OBOL:automatic]
xref: MA:0001821
is_a: UBERON:0000030 ! implied link automatically realized ! lamina propria
relationship: part_of UBERON:0001004
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004780
name: gastrointestinal system lamina propria
def: "A lamina propria that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system lamina propria" EXACT [OBOL:automatic]
synonym: "digestive system lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "gastrointestinal system lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of digestive system" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "lamina propria of digestive system" EXACT [OBOL:automatic]
synonym: "lamina propria of gastrointestinal system" EXACT [OBOL:automatic]
xref: MA:0001899
is_a: UBERON:0000030 ! implied link automatically realized ! lamina propria
relationship: part_of UBERON:0001007
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0004781
name: gall bladder lamina propria
def: "A lamina propria that is part of a gallbladder [Obol]." [OBOL:automatic]
synonym: "gall bladder lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "gallbladder lamina propria" EXACT [OBOL:automatic]
synonym: "gallbladder lamina propria mucosa" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of gall bladder" EXACT [OBOL:automatic]
synonym: "lamina propria mucosa of gallbladder" EXACT [OBOL:automatic]
synonym: "lamina propria of gall bladder" EXACT [OBOL:automatic]
synonym: "lamina propria of gallbladder" EXACT [OBOL:automatic]
xref: MA:0001633
is_a: UBERON:0004780 ! implied link automatically realized ! gastrointestinal system lamina propria
relationship: part_of UBERON:0002110
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0002110 ! gallbladder
[Term]
id: UBERON:0004782
name: gastrointestinal system serosa
def: "A serous membrane that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system serosa" EXACT [OBOL:automatic]
synonym: "digestive system serous membrane" EXACT [OBOL:automatic]
synonym: "gastrointestinal system serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of digestive system" EXACT [OBOL:automatic]
synonym: "serosa of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "serous membrane of digestive system" EXACT [OBOL:automatic]
synonym: "serous membrane of gastrointestinal system" EXACT [OBOL:automatic]
xref: MA:0001522
is_a: UBERON:0000042 ! implied link automatically realized ! serous membrane
relationship: part_of UBERON:0001007
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0004783
name: gall bladder serosa
def: "A serous membrane that is part of a gallbladder [Obol]." [OBOL:automatic]
synonym: "gall bladder serous membrane" EXACT [OBOL:automatic]
synonym: "gallbladder serosa" EXACT [OBOL:automatic]
synonym: "gallbladder serous membrane" EXACT [OBOL:automatic]
synonym: "serosa of gall bladder" EXACT [OBOL:automatic]
synonym: "serosa of gallbladder" EXACT [OBOL:automatic]
synonym: "serous membrane of gall bladder" EXACT [OBOL:automatic]
synonym: "serous membrane of gallbladder" EXACT [OBOL:automatic]
xref: FMA:14659
xref: MA:0001634
is_a: UBERON:0004782 ! implied link automatically realized ! gastrointestinal system serosa
relationship: part_of UBERON:0002110
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0002110 ! gallbladder
[Term]
id: UBERON:0004784
name: heart ventricle wall
def: "An anatomical wall that is part of a cardiac ventricle [Obol]." [OBOL:automatic]
synonym: "anatomical wall of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "anatomical wall of heart ventricle" EXACT [OBOL:automatic]
synonym: "anatomical wall of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "anatomical wall of ventricle of heart" EXACT [OBOL:automatic]
synonym: "cardiac ventricle anatomical wall" EXACT [OBOL:automatic]
synonym: "cardiac ventricle wall" EXACT [OBOL:automatic]
synonym: "heart ventricle anatomical wall" EXACT [OBOL:automatic]
synonym: "lower chamber of heart anatomical wall" EXACT [OBOL:automatic]
synonym: "lower chamber of heart wall" EXACT [OBOL:automatic]
synonym: "ventricle of heart anatomical wall" EXACT [OBOL:automatic]
synonym: "ventricle of heart wall" EXACT [OBOL:automatic]
synonym: "wall of cardiac ventricle" EXACT [OBOL:automatic]
synonym: "wall of heart ventricle" EXACT [OBOL:automatic]
synonym: "wall of lower chamber of heart" EXACT [OBOL:automatic]
synonym: "wall of ventricle of heart" EXACT [OBOL:automatic]
xref: FMA:13884
xref: MA:0002791
is_a: UBERON:0000060 ! implied link automatically realized ! anatomical wall
relationship: part_of UBERON:0002082
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0004785
name: respiratory system mucosa
def: "A mucosa that is part of a respiratory system [Obol]." [OBOL:automatic]
comment: TODO - split respiratory tract mucosa from respiratory system mucosa
synonym: "apparatus respiratorius mucosa" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius mucosa of organ" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius mucous membrane" EXACT [OBOL:automatic]
synonym: "mucosa of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "mucosa of organ of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "mucosa of organ of respiratory system" EXACT [OBOL:automatic]
synonym: "mucosa of respiratory system" EXACT [OBOL:automatic]
synonym: "mucous membrane of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "mucous membrane of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory mucosa" RELATED [BTO:0000973]
synonym: "respiratory system mucosa of organ" EXACT [OBOL:automatic]
synonym: "respiratory system mucous membrane" EXACT [OBOL:automatic]
xref: BTO:0000973
xref: GAID:304
xref: MA:0001827
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
relationship: part_of UBERON:0001004
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004786
name: gastrointestinal system mucosa
def: "A mucosa that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system mucosa" EXACT [OBOL:automatic]
synonym: "digestive system mucosa of organ" EXACT [OBOL:automatic]
synonym: "digestive system mucous membrane" EXACT [OBOL:automatic]
synonym: "gastrointestinal system mucosa of organ" EXACT [OBOL:automatic]
synonym: "gastrointestinal system mucous membrane" EXACT [OBOL:automatic]
synonym: "mucosa of digestive system" EXACT [OBOL:automatic]
synonym: "mucosa of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "mucosa of organ of digestive system" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "mucous membrane of digestive system" EXACT [OBOL:automatic]
synonym: "mucous membrane of gastrointestinal system" EXACT [OBOL:automatic]
xref: MA:0001521
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
relationship: part_of UBERON:0001007
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0004787
name: urethra urothelium
def: "A urothelium that is part of a urethra [Obol]." [OBOL:automatic]
synonym: "urethra Uroepithelium" EXACT [OBOL:automatic]
synonym: "uroepithelium of urethra" EXACT [OBOL:automatic]
synonym: "urothelium of urethra" EXACT [OBOL:automatic]
xref: MA:0001687
is_a: UBERON:0000365 ! implied link automatically realized ! urothelium
is_a: UBERON:0002325 ! implied link automatically realized ! epithelium of urethra
relationship: part_of UBERON:0000057
intersection_of: UBERON:0000365 ! urothelium
intersection_of: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0004788
name: kidney pelvis urothelium
def: "A urothelium that is part of a renal pelvis [Obol]." [OBOL:automatic]
synonym: "kidney pelvis transitional epithelium" EXACT [OBOL:automatic]
synonym: "kidney pelvis Uroepithelium" EXACT [OBOL:automatic]
synonym: "pelvis of ureter Uroepithelium" EXACT [OBOL:automatic]
synonym: "pelvis of ureter urothelium" EXACT [OBOL:automatic]
synonym: "renal pelvis transitional epithelium" EXACT [OBOL:automatic]
synonym: "renal pelvis Uroepithelium" EXACT [OBOL:automatic]
synonym: "renal pelvis urothelium" EXACT [OBOL:automatic]
synonym: "transitional epithelium of kidney pelvis" EXACT [OBOL:automatic]
synonym: "transitional epithelium of renal pelvis" EXACT [FMA:263264]
synonym: "uroepithelium of kidney pelvis" EXACT [OBOL:automatic]
synonym: "uroepithelium of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "uroepithelium of renal pelvis" EXACT [OBOL:automatic]
synonym: "urothelium of kidney pelvis" EXACT [OBOL:automatic]
synonym: "urothelium of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "urothelium of renal pelvis" EXACT [OBOL:automatic]
xref: FMA:263264
xref: MA:0002632
is_a: UBERON:0001254 ! implied link automatically realized ! urothelium of ureter
is_a: UBERON:0004819 ! implied link automatically realized ! kidney epithelium
relationship: part_of UBERON:0001224
intersection_of: UBERON:0000365 ! urothelium
intersection_of: part_of UBERON:0001224 ! renal pelvis
[Term]
id: UBERON:0004789
name: larynx mucous gland
def: "A mucous gland that is part of a larynx [Obol]." [OBOL:automatic]
synonym: "mucous gland of larynx" EXACT [OBOL:automatic]
xref: MA:0001767
is_a: UBERON:0000414 ! implied link automatically realized ! mucous gland
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001737
intersection_of: UBERON:0000414 ! mucous gland
intersection_of: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0004790
name: skin mucous gland
def: "A mucous gland that is part of a skin of body [Obol]." [OBOL:automatic]
synonym: "entire skin mucous gland" EXACT [OBOL:automatic]
synonym: "mucous gland of entire skin" EXACT [OBOL:automatic]
synonym: "mucous gland of skin of body" EXACT [OBOL:automatic]
synonym: "skin of body mucous gland" EXACT [OBOL:automatic]
xref: MA:0000148
is_a: UBERON:0000414 ! implied link automatically realized ! mucous gland
is_a: UBERON:0002419 ! implied link automatically realized ! skin gland
relationship: part_of UBERON:0002097
intersection_of: UBERON:0000414 ! mucous gland
intersection_of: part_of UBERON:0002097 ! skin of body
[Term]
id: UBERON:0004791
name: thymus trabecula
def: "A trabecula that is part of a thymus [Obol]." [OBOL:automatic]
synonym: "thymus gland trabecula" EXACT [OBOL:automatic]
synonym: "trabecula of thymus" EXACT [OBOL:automatic]
synonym: "trabecula of thymus gland" EXACT [OBOL:automatic]
xref: MA:0002674
is_a: UBERON:0000440 ! implied link automatically realized ! trabecula
relationship: part_of UBERON:0002370
intersection_of: UBERON:0000440 ! trabecula
intersection_of: part_of UBERON:0002370 ! thymus
[Term]
id: UBERON:0004792
name: endocrine pancreas secretion
def: "A secretion that is part of a endocrine pancreas [Obol]." [OBOL:automatic]
synonym: "pars endocrina pancreatis secretion" EXACT [OBOL:automatic]
synonym: "secretion of endocrine pancreas" EXACT [OBOL:automatic]
synonym: "secretion of pars endocrina pancreatis" EXACT [OBOL:automatic]
xref: MA:0002517
is_a: UBERON:0004795 ! implied link automatically realized ! pancreas secretion
relationship: part_of UBERON:0000016
intersection_of: UBERON:0000456 ! secretion
intersection_of: part_of UBERON:0000016 ! endocrine pancreas
[Term]
id: UBERON:0004793
name: exocrine pancreas secretion
def: "A secretion that is part of a exocrine pancreas [Obol]." [OBOL:automatic]
synonym: "pars exocrina pancreatis secretion" EXACT [OBOL:automatic]
synonym: "secretion of exocrine pancreas" EXACT [OBOL:automatic]
synonym: "secretion of pars exocrina pancreatis" EXACT [OBOL:automatic]
xref: MA:0002518
is_a: UBERON:0004795 ! implied link automatically realized ! pancreas secretion
relationship: part_of UBERON:0000017
intersection_of: UBERON:0000456 ! secretion
intersection_of: part_of UBERON:0000017 ! exocrine pancreas
[Term]
id: UBERON:0004794
name: esophagus secretion
def: "A secretion that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "gullet secretion" EXACT [OBOL:automatic]
synonym: "oesophagus secretion" EXACT [OBOL:automatic]
synonym: "secretion of esophagus" EXACT [OBOL:automatic]
synonym: "secretion of gullet" EXACT [OBOL:automatic]
synonym: "secretion of oesophagus" EXACT [OBOL:automatic]
xref: MA:0002514
is_a: UBERON:0000456 ! implied link automatically realized ! secretion
relationship: part_of UBERON:0001043
intersection_of: UBERON:0000456 ! secretion
intersection_of: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0004795
name: pancreas secretion
def: "A secretion that is part of a pancreas [Obol]." [OBOL:automatic]
synonym: "secretion of pancreas" EXACT [OBOL:automatic]
xref: MA:0002516
is_a: UBERON:0000456 ! implied link automatically realized ! secretion
relationship: part_of UBERON:0001264
intersection_of: UBERON:0000456 ! secretion
intersection_of: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0004796
name: prostate gland secretion
def: "A secretion that is part of a prostate gland [Obol]." [OBOL:automatic]
synonym: "prostate secretion" EXACT [OBOL:automatic]
synonym: "secretion of prostate" EXACT [OBOL:automatic]
synonym: "secretion of prostate gland" EXACT [OBOL:automatic]
xref: MA:0002525
is_a: UBERON:0000456 ! implied link automatically realized ! secretion
relationship: part_of UBERON:0002367
intersection_of: UBERON:0000456 ! secretion
intersection_of: part_of UBERON:0002367 ! prostate gland
[Term]
id: UBERON:0004797
name: blood vessel layer
xref: MA:0002854
is_a: UBERON:0000119 ! implied link automatically realized ! cell layer
relationship: develops_into UBERON:0001981
intersection_of: UBERON:0000119 ! cell layer
intersection_of: develops_into UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0004798
name: respiratory system basal lamina
def: "A basal lamina that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius basal lamina" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius basal lamina of connective tissue" EXACT [OBOL:automatic]
synonym: "basal lamina of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "basal lamina of connective tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "basal lamina of connective tissue of respiratory system" EXACT [OBOL:automatic]
synonym: "basal lamina of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system basal lamina of connective tissue" EXACT [OBOL:automatic]
xref: MA:0001816
is_a: UBERON:0000482 ! implied link automatically realized ! basal lamina
relationship: part_of UBERON:0001004
intersection_of: UBERON:0000482 ! basal lamina
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004799
name: trachea basal lamina
def: "A basal lamina that is part of a respiratory airway [Obol]." [OBOL:automatic]
synonym: "basal lamina of connective tissue of respiratory airway" EXACT [OBOL:automatic]
xref: MA:0001855
is_a: UBERON:0004798 ! implied link automatically realized ! respiratory system basal lamina
relationship: part_of UBERON:0001005
intersection_of: UBERON:0000482 ! basal lamina
intersection_of: part_of UBERON:0001005 ! respiratory airway
[Term]
id: UBERON:0004800
name: bronchus basal lamina
def: "A basal lamina that is part of a bronchus [Obol]." [OBOL:automatic]
synonym: "basal lamina of bronchi" EXACT [OBOL:automatic]
synonym: "basal lamina of bronchial trunk" EXACT [OBOL:automatic]
synonym: "basal lamina of bronchus" EXACT [OBOL:automatic]
synonym: "basal lamina of connective tissue of bronchi" EXACT [OBOL:automatic]
synonym: "basal lamina of connective tissue of bronchial trunk" EXACT [OBOL:automatic]
synonym: "basal lamina of connective tissue of bronchus" EXACT [OBOL:automatic]
synonym: "bronchi basal lamina" EXACT [OBOL:automatic]
synonym: "bronchi basal lamina of connective tissue" EXACT [OBOL:automatic]
synonym: "bronchial trunk basal lamina" EXACT [OBOL:automatic]
synonym: "bronchial trunk basal lamina of connective tissue" EXACT [OBOL:automatic]
synonym: "bronchus basal lamina of connective tissue" EXACT [OBOL:automatic]
xref: MA:0001833
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0004798 ! implied link automatically realized ! respiratory system basal lamina
relationship: part_of UBERON:0002185
intersection_of: UBERON:0000482 ! basal lamina
intersection_of: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0004801
name: cervix epithelium
def: "An epithelium that is part of a uterine cervix [Obol]." [OBOL:automatic]
synonym: "cervical canal epithelial tissue" EXACT [OBOL:automatic]
synonym: "cervical canal epithelium" EXACT [OBOL:automatic]
synonym: "cervical canal of uterus epithelial tissue" EXACT [OBOL:automatic]
synonym: "cervical canal of uterus epithelium" EXACT [OBOL:automatic]
synonym: "cervix epithelial tissue" EXACT [OBOL:automatic]
synonym: "cervix of uterus epithelial tissue" EXACT [OBOL:automatic]
synonym: "cervix of uterus epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cervical canal" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cervical canal of uterus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cervix" EXACT [OBOL:automatic]
synonym: "epithelial tissue of cervix of uterus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of neck of uterus" EXACT [OBOL:automatic]
synonym: "epithelial tissue of uterine cervix" EXACT [OBOL:automatic]
synonym: "epithelium of cervical canal" EXACT [OBOL:automatic]
synonym: "epithelium of cervical canal of uterus" EXACT [OBOL:automatic]
synonym: "epithelium of cervix" EXACT [OBOL:automatic]
synonym: "epithelium of cervix of uterus" EXACT [OBOL:automatic]
synonym: "epithelium of neck of uterus" EXACT [OBOL:automatic]
synonym: "epithelium of uterine cervix" EXACT [OBOL:automatic]
synonym: "neck of uterus epithelial tissue" EXACT [OBOL:automatic]
synonym: "neck of uterus epithelium" EXACT [OBOL:automatic]
synonym: "uterine cervix epithelial tissue" EXACT [OBOL:automatic]
synonym: "uterine cervix epithelium" EXACT [OBOL:automatic]
xref: MA:0001724
is_a: UBERON:0004909 ! implied link automatically realized ! epithelium of gonad
relationship: part_of UBERON:0000002
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000002 ! uterine cervix
[Term]
id: UBERON:0004802
name: respiratory tract epithelium
def: "An epithelium that is part of a respiratory tract [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of respiratory tract" EXACT [OBOL:automatic]
synonym: "epithelium of respiratory tract" EXACT [OBOL:automatic]
synonym: "respiratory epithelium" RELATED [BTO:0000419]
synonym: "respiratory tract epithelial tissue" EXACT [OBOL:automatic]
xref: BTO:0000419
xref: MA:0001480
is_a: UBERON:0004807 ! implied link automatically realized ! respiratory system epithelium
is_a: UBERON:0005911 ! implied link automatically realized ! endo-epithelium
relationship: part_of UBERON:0000065
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000065 ! respiratory tract
[Term]
id: UBERON:0004803
name: penis epithelium
def: "An epithelium that is part of a penis [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of penis" EXACT [OBOL:automatic]
synonym: "epithelium of penis" EXACT [OBOL:automatic]
synonym: "penis epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001742
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000989
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000989 ! penis
[Term]
id: UBERON:0004804
name: oviduct epithelium
def: "An epithelium that is part of a oviduct [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of oviduct" EXACT [OBOL:automatic]
synonym: "epithelium of oviduct" EXACT [OBOL:automatic]
synonym: "oviduct epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001718
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000993
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000993 ! oviduct
[Term]
id: UBERON:0004805
name: seminal vesicle epithelium
def: "An epithelium that is part of a seminal vesicle [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of seminal gland" EXACT [OBOL:automatic]
synonym: "epithelial tissue of seminal vesicle" EXACT [OBOL:automatic]
synonym: "epithelium of seminal gland" EXACT [OBOL:automatic]
synonym: "epithelium of seminal vesicle" EXACT [OBOL:automatic]
synonym: "seminal gland epithelial tissue" EXACT [OBOL:automatic]
synonym: "seminal gland epithelium" EXACT [OBOL:automatic]
synonym: "seminal vesicle epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001745
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000998
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000998 ! seminal vesicle
[Term]
id: UBERON:0004806
name: vas deferens epithelium
def: "An epithelium that is part of a vas deferens [Obol]." [OBOL:automatic]
synonym: "deferent duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "deferent duct epithelium" EXACT [OBOL:automatic]
synonym: "ductus deferens epithelial tissue" EXACT [OBOL:automatic]
synonym: "ductus deferens epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of deferent duct" EXACT [OBOL:automatic]
synonym: "epithelial tissue of ductus deferens" EXACT [OBOL:automatic]
synonym: "epithelial tissue of sperm duct" EXACT [OBOL:automatic]
synonym: "epithelial tissue of vas deferen" EXACT [OBOL:automatic]
synonym: "epithelial tissue of vas deferens" EXACT [OBOL:automatic]
synonym: "epithelium of deferent duct" EXACT [OBOL:automatic]
synonym: "epithelium of ductus deferens" EXACT [OBOL:automatic]
synonym: "epithelium of sperm duct" EXACT [OBOL:automatic]
synonym: "epithelium of vas deferen" EXACT [OBOL:automatic]
synonym: "epithelium of vas deferens" EXACT [OBOL:automatic]
synonym: "sperm duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "sperm duct epithelium" EXACT [OBOL:automatic]
synonym: "vas deferen epithelial tissue" EXACT [OBOL:automatic]
synonym: "vas deferen epithelium" EXACT [OBOL:automatic]
synonym: "vas deferens epithelial tissue" EXACT [OBOL:automatic]
xref: FMA:225317
xref: MA:0001749
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001000
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001000 ! vas deferens
[Term]
id: UBERON:0004807
name: respiratory system epithelium
def: "An epithelium that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius epithelial tissue" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "epithelial tissue of respiratory system" EXACT [OBOL:automatic]
synonym: "epithelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "epithelium of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001823
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0001004
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004808
name: gastrointestinal system epithelium
def: "An epithelium that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system epithelial tissue" EXACT [OBOL:automatic]
synonym: "digestive system epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of digestive system" EXACT [OBOL:automatic]
synonym: "epithelial tissue of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "epithelium of digestive system" EXACT [OBOL:automatic]
synonym: "epithelium of gastrointestinal system" EXACT [OBOL:automatic]
synonym: "gastrointestinal system epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001520
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0001007
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0004809
name: salivary gland epithelium
def: "An epithelium that is part of a salivary gland [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of salivary gland" EXACT [OBOL:automatic]
synonym: "epithelium of salivary gland" EXACT [OBOL:automatic]
synonym: "salivary gland epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001587
is_a: UBERON:0003929 ! implied link automatically realized ! gut epithelium
relationship: part_of UBERON:0001044
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001044 ! salivary gland
[Term]
id: UBERON:0004810
name: renal tubule epithelium
def: "An epithelium that is part of a renal tubule [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of nephron tubule" EXACT [OBOL:automatic]
synonym: "epithelial tissue of renal tubule" EXACT [OBOL:automatic]
synonym: "epithelial tissue of tubulus renalis" EXACT [OBOL:automatic]
synonym: "epithelium of nephron tubule" EXACT [OBOL:automatic]
synonym: "epithelium of renal tubule" EXACT [OBOL:automatic]
synonym: "epithelium of tubulus renalis" EXACT [OBOL:automatic]
synonym: "nephron tubule epithelial tissue" EXACT [OBOL:automatic]
synonym: "nephron tubule epithelium" EXACT [OBOL:automatic]
synonym: "renal tubule epithelial tissue" EXACT [OBOL:automatic]
synonym: "tubulus renalis epithelial tissue" EXACT [OBOL:automatic]
synonym: "tubulus renalis epithelium" EXACT [OBOL:automatic]
xref: MA:0001681
is_a: UBERON:0004211 ! implied link automatically realized ! nephron epithelium
relationship: part_of UBERON:0001231
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001231 ! renal tubule
[Term]
id: UBERON:0004811
name: endometrium epithelium
def: "An epithelium that is part of a endometrium [Obol]." [OBOL:automatic]
synonym: "endometrium epithelial tissue" EXACT [OBOL:automatic]
synonym: "epithelial tissue of endometrium" EXACT [OBOL:automatic]
synonym: "epithelium of endometrium" EXACT [OBOL:automatic]
synonym: "epithelium of tunica mucosa (endometrium)" EXACT [OBOL:automatic]
xref: MA:0002731
is_a: UBERON:0004909 ! implied link automatically realized ! epithelium of gonad
relationship: part_of UBERON:0001295
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001295 ! endometrium
[Term]
id: UBERON:0004812
name: male prepuce epithelium
def: "An epithelium that is part of a prepuce of penis [Obol]." [OBOL:automatic]
comment: TODO - check prepuce vs male prepuce
synonym: "epithelial tissue of foreskin" EXACT [OBOL:automatic]
synonym: "epithelial tissue of penile prepuce" EXACT [OBOL:automatic]
synonym: "epithelial tissue of prepuce" BROAD [OBOL:automatic]
synonym: "epithelial tissue of prepuce of penis" EXACT [OBOL:automatic]
synonym: "epithelium of foreskin" EXACT [OBOL:automatic]
synonym: "epithelium of penile prepuce" EXACT [OBOL:automatic]
synonym: "epithelium of prepuce" BROAD [OBOL:automatic]
synonym: "epithelium of prepuce of penis" EXACT [OBOL:automatic]
synonym: "foreskin epithelial tissue" EXACT [OBOL:automatic]
synonym: "foreskin epithelium" EXACT [OBOL:automatic]
synonym: "penile prepuce epithelial tissue" EXACT [OBOL:automatic]
synonym: "penile prepuce epithelium" EXACT [OBOL:automatic]
synonym: "prepuce epithelial tissue" BROAD [OBOL:automatic]
synonym: "prepuce of penis epithelial tissue" EXACT [OBOL:automatic]
synonym: "prepuce of penis epithelium" BROAD [OBOL:automatic]
xref: EMAPA:30638
xref: EMAPA:30655
xref: MA:0001753
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004803 ! implied link automatically realized ! penis epithelium
relationship: part_of UBERON:0001332
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001332 ! prepuce of penis
[Term]
id: UBERON:0004813
name: seminiferous tubule epithelium
def: "The epithelium lining the seminiferous tubules composed of primary male germ cells (spermatogonia) and supporting sertoli cells. As spermatogenesis proceeds, the developing germ cells migrate toward the lumen. The adluminal compartment, the inner two thirds of the tubules, contains spermatocytes and the more advanced germ cells[GAID]." [Wikipedia:Germinal_epithelium_(male)]
synonym: "epithelial tissue of seminiferous tubule" EXACT [OBOL:automatic]
synonym: "epithelial tissue of seminiferous tubule of testis" EXACT [OBOL:automatic]
synonym: "epithelium of seminiferous tubule" EXACT [OBOL:automatic]
synonym: "epithelium of seminiferous tubule of testis" EXACT [OBOL:automatic]
synonym: "germinal epithelium (male)" EXACT [Wikipedia:Germinal_epithelium_(male)]
synonym: "male germinal epithelium" EXACT [Wikipedia:Germinal_epithelium_(male)]
synonym: "seminiferous epithelium" EXACT [BTO:0001811]
synonym: "seminiferous tubule epithelial tissue" EXACT [OBOL:automatic]
synonym: "testis germinal epithelium" EXACT [HOG:0000631]
synonym: "wall of seminiferous tubule" EXACT [Wikipedia:Germinal_epithelium_(male)]
xref: BTO:0001811
xref: FMA:19885
xref: GAID:401
xref: HOG:0000631
xref: MA:0001748
is_a: UBERON:0004910 ! implied link automatically realized ! epithelium of testis
relationship: part_of UBERON:0001343
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001343 ! seminiferous tubule of testis
[Term]
id: UBERON:0004814
name: upper respiratory tract epithelium
def: "An epithelium that is part of a upper respiratory tract [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of upper respiratory tract" EXACT [OBOL:automatic]
synonym: "epithelium of upper respiratory tract" EXACT [OBOL:automatic]
synonym: "upper respiratory tract epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001912
is_a: UBERON:0004802 ! implied link automatically realized ! respiratory tract epithelium
relationship: part_of UBERON:0001557
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001557 ! upper respiratory tract
[Term]
id: UBERON:0004815
name: lower respiratory tract epithelium
def: "An epithelium that is part of a lower respiratory tract [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "epithelium of lower respiratory tract" EXACT [OBOL:automatic]
synonym: "lower respiratory tract epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001481
is_a: UBERON:0004802 ! implied link automatically realized ! respiratory tract epithelium
relationship: part_of UBERON:0001558
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001558 ! lower respiratory tract
[Term]
id: UBERON:0004816
name: larynx epithelium
def: "An epithelium that is part of a larynx [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of larynx" EXACT [OBOL:automatic]
synonym: "epithelium of larynx" EXACT [OBOL:automatic]
synonym: "larynx epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001765
is_a: UBERON:0004814 ! implied link automatically realized ! upper respiratory tract epithelium
relationship: part_of UBERON:0001737
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0004817
name: lacrimal gland epithelium
def: "An epithelium that is part of a lacrimal gland [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of lacrimal gland" EXACT [OBOL:automatic]
synonym: "epithelium of lacrimal gland" EXACT [OBOL:automatic]
synonym: "lacrimal gland epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001297
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0001817
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001817 ! lacrimal gland
[Term]
id: UBERON:0004818
name: terminal bronchus epithelium
def: "An epithelium that is part of a terminal bronchus [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of terminal bronchus" EXACT [OBOL:automatic]
synonym: "epithelium of terminal bronchus" EXACT [OBOL:automatic]
synonym: "terminal bronchus epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0001851
is_a: UBERON:0002031 ! implied link automatically realized ! epithelium of bronchus
relationship: part_of UBERON:0002041
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002041 ! terminal bronchus
[Term]
id: UBERON:0004819
name: kidney epithelium
def: "An epithelium that is part of a kidney [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of kidney" EXACT [OBOL:automatic]
synonym: "epithelium of kidney" EXACT [OBOL:automatic]
synonym: "kidney epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0002846
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0002113
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0004820
name: bile duct epithelium
def: "An epithelium that is part of a bile duct [Obol]." [OBOL:automatic]
synonym: "bile duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "biliary duct epithelial tissue" EXACT [OBOL:automatic]
synonym: "biliary duct epithelium" EXACT [OBOL:automatic]
synonym: "epithelial tissue of bile duct" EXACT [OBOL:automatic]
synonym: "epithelial tissue of biliary duct" EXACT [OBOL:automatic]
synonym: "epithelium of bile duct" EXACT [OBOL:automatic]
synonym: "epithelium of biliary duct" EXACT [OBOL:automatic]
xref: MA:0001629
is_a: UBERON:0004808 ! implied link automatically realized ! gastrointestinal system epithelium
relationship: part_of UBERON:0002394
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002394 ! bile duct
[Term]
id: UBERON:0004821
name: alveolus epithelium
def: "An epithelium that is part of an alveolus [Obol]." [OBOL:automatic]
synonym: "alveolus epithelial tissue" EXACT [OBOL:automatic]
synonym: "epithelial tissue of alveolus" EXACT [OBOL:automatic]
synonym: "epithelium of alveolus" EXACT [OBOL:automatic]
xref: MA:0001771
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0003215
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003215 ! alveolus
[Term]
id: UBERON:0004822
name: extrahepatic bile duct epithelium
def: "An epithelium that is part of a extrahepatic bile duct [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of extrahepatic bile duct" EXACT [OBOL:automatic]
synonym: "epithelium of extrahepatic bile duct" EXACT [OBOL:automatic]
synonym: "extrahepatic bile duct epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0002661
is_a: UBERON:0004820 ! implied link automatically realized ! bile duct epithelium
relationship: part_of UBERON:0003703
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003703 ! extrahepatic bile duct
[Term]
id: UBERON:0004823
name: intrahepatic bile duct epithelium
def: "An epithelium that is part of a intrahepatic bile duct [Obol]." [OBOL:automatic]
synonym: "epithelial tissue of intrahepatic bile duct" EXACT [OBOL:automatic]
synonym: "epithelium of intrahepatic bile duct" EXACT [OBOL:automatic]
synonym: "intrahepatic bile duct epithelial tissue" EXACT [OBOL:automatic]
xref: MA:0002662
is_a: UBERON:0004820 ! implied link automatically realized ! bile duct epithelium
relationship: part_of UBERON:0003704
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003704 ! intrahepatic bile duct
[Term]
id: UBERON:0004825
name: dental lamina
def: "A lamina that is part of a calcareous tooth [Obol]." [OBOL:automatic]
synonym: "calcareous tooth lamina" EXACT [OBOL:automatic]
synonym: "dentine containing tooth lamina" EXACT [OBOL:automatic]
synonym: "lamina of calcareous tooth" EXACT [OBOL:automatic]
synonym: "lamina of dentine containing tooth" EXACT [OBOL:automatic]
synonym: "lamina of tooth" EXACT [OBOL:automatic]
synonym: "lamina of vertebrate tooth" EXACT [OBOL:automatic]
synonym: "tooth lamina" EXACT [OBOL:automatic]
synonym: "vertebrate tooth lamina" EXACT [OBOL:automatic]
xref: MA:0001597
is_a: UBERON:0000957 ! implied link automatically realized ! lamina
relationship: part_of UBERON:0001091
intersection_of: UBERON:0000957 ! lamina
intersection_of: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0004827
name: thyroid gland medulla
def: "A medulla that is part of a thyroid [Obol]." [OBOL:automatic]
synonym: "medulla of thyroid" EXACT [OBOL:automatic]
synonym: "medulla of thyroid follicle" EXACT [OBOL:automatic]
synonym: "medulla of thyroid gland" EXACT [OBOL:automatic]
synonym: "medulla of thyroid gland follicle" EXACT [OBOL:automatic]
synonym: "thyroid follicle medulla" EXACT [OBOL:automatic]
synonym: "thyroid gland follicle medulla" EXACT [OBOL:automatic]
synonym: "thyroid medulla" EXACT [OBOL:automatic]
xref: MA:0000132
is_a: UBERON:0000958 ! implied link automatically realized ! medulla
relationship: part_of UBERON:0002046
intersection_of: UBERON:0000958 ! medulla
intersection_of: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0004829
name: urethra skeletal muscle
def: "A portion of skeletal muscle tissue that is part of a urethra [Obol]." [OBOL:automatic]
synonym: "skeletal muscle of urethra" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of urethra" EXACT [OBOL:automatic]
synonym: "urethra skeletal muscle tissue" EXACT [OBOL:automatic]
xref: MA:0001690
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
relationship: part_of UBERON:0000057
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0004830
name: respiratory system skeletal muscle
def: "A portion of skeletal muscle tissue that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "respiratory system skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "skeletal muscle of respiratory system" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001829
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004831
name: esophagus skeletal muscle
def: "A portion of skeletal muscle tissue that is part of a esophagus [Obol]." [OBOL:automatic]
synonym: "esophagus skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "gullet skeletal muscle" EXACT [OBOL:automatic]
synonym: "gullet skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "oesophagus skeletal muscle" EXACT [OBOL:automatic]
synonym: "oesophagus skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of esophagus" EXACT [OBOL:automatic]
synonym: "skeletal muscle of gullet" EXACT [OBOL:automatic]
synonym: "skeletal muscle of oesophagus" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of esophagus" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of gullet" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of oesophagus" EXACT [OBOL:automatic]
xref: MA:0001572
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
relationship: part_of UBERON:0001043
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0004832
name: anal region skeletal muscle
def: "A portion of skeletal muscle tissue that is part of an anal region [Obol]." [OBOL:automatic]
synonym: "anal part of perineum skeletal muscle" EXACT [OBOL:automatic]
synonym: "anal part of perineum skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "anal region skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "anal triangle skeletal muscle" EXACT [OBOL:automatic]
synonym: "anal triangle skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of anal part of perineum" EXACT [OBOL:automatic]
synonym: "skeletal muscle of anal region" EXACT [OBOL:automatic]
synonym: "skeletal muscle of anal triangle" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of anal part of perineum" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of anal region" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of anal triangle" EXACT [OBOL:automatic]
xref: MA:0001530
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
relationship: part_of UBERON:0001353
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001353 ! anal region
[Term]
id: UBERON:0004833
name: lip skeletal muscle
def: "A portion of skeletal muscle tissue that is part of a lip [Obol]." [OBOL:automatic]
synonym: "lip skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle of lip" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue of lip" EXACT [OBOL:automatic]
xref: MA:0001578
is_a: UBERON:0003899 ! implied link automatically realized ! skeletal muscle of head
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001833
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001833 ! lip
[Term]
id: UBERON:0004834
name: hepatic duct smooth muscle
def: "A portion of smooth muscle tissue that is part of a common hepatic duct [Obol]." [OBOL:automatic]
synonym: "common hepatic duct involuntary muscle" EXACT [OBOL:automatic]
synonym: "common hepatic duct non-striated muscle" EXACT [OBOL:automatic]
synonym: "common hepatic duct smooth muscle" EXACT [OBOL:automatic]
synonym: "common hepatic duct smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "hepatic duct involuntary muscle" EXACT [OBOL:automatic]
synonym: "hepatic duct non-striated muscle" EXACT [OBOL:automatic]
synonym: "hepatic duct smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of common hepatic duct" EXACT [OBOL:automatic]
synonym: "involuntary muscle of hepatic duct" EXACT [OBOL:automatic]
synonym: "non-striated muscle of common hepatic duct" EXACT [OBOL:automatic]
synonym: "non-striated muscle of hepatic duct" EXACT [OBOL:automatic]
synonym: "smooth muscle of common hepatic duct" EXACT [OBOL:automatic]
synonym: "smooth muscle of hepatic duct" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of common hepatic duct" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of hepatic duct" EXACT [OBOL:automatic]
xref: MA:0001640
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004226 ! implied link automatically realized ! gastrointestinal system smooth muscle
relationship: part_of UBERON:0001175
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001175 ! common hepatic duct
[Term]
id: UBERON:0004835
name: epididymis smooth muscle
def: "A portion of smooth muscle tissue that is part of a epididymis [Obol]." [OBOL:automatic]
synonym: "epididymis involuntary muscle" EXACT [OBOL:automatic]
synonym: "epididymis non-striated muscle" EXACT [OBOL:automatic]
synonym: "epididymis smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "epididymus involuntary muscle" EXACT [OBOL:automatic]
synonym: "epididymus non-striated muscle" EXACT [OBOL:automatic]
synonym: "epididymus smooth muscle" EXACT [OBOL:automatic]
synonym: "epididymus smooth muscle tissue" EXACT [OBOL:automatic]
synonym: "involuntary muscle of epididymis" EXACT [OBOL:automatic]
synonym: "involuntary muscle of epididymus" EXACT [OBOL:automatic]
synonym: "non-striated muscle of epididymis" EXACT [OBOL:automatic]
synonym: "non-striated muscle of epididymus" EXACT [OBOL:automatic]
synonym: "smooth muscle of epididymis" EXACT [OBOL:automatic]
synonym: "smooth muscle of epididymus" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of epididymis" EXACT [OBOL:automatic]
synonym: "smooth muscle tissue of epididymus" EXACT [OBOL:automatic]
xref: MA:0001736
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001301
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001301 ! epididymis
[Term]
id: UBERON:0004836
name: medial rectus extraocular muscle
def: "An extra-ocular muscle that is part of a medial rectus [Obol]." [OBOL:automatic]
synonym: "extra-ocular muscle of medial rectus" EXACT [OBOL:automatic]
synonym: "extra-ocular skeletal muscle of medial rectus" EXACT [OBOL:automatic]
synonym: "extraocular muscle of medial rectus" EXACT [OBOL:automatic]
synonym: "extrinsic muscle of eyeball of medial rectus" EXACT [OBOL:automatic]
synonym: "medial rectus extra-ocular muscle" EXACT [OBOL:automatic]
synonym: "medial rectus extra-ocular skeletal muscle" EXACT [OBOL:automatic]
synonym: "medial rectus extrinsic muscle of eyeball" EXACT [OBOL:automatic]
xref: HOG:0001127
xref: MA:0001281
is_a: UBERON:0001601 ! implied link automatically realized ! extra-ocular muscle
relationship: part_of UBERON:0001602
intersection_of: UBERON:0001601 ! extra-ocular muscle
intersection_of: part_of UBERON:0001602 ! medial rectus
[Term]
id: UBERON:0004837
name: lateral rectus extraocular muscle
def: "An extra-ocular muscle that is part of a lateral rectus [Obol]." [OBOL:automatic]
synonym: "extra-ocular muscle of lateral rectus" EXACT [OBOL:automatic]
synonym: "extra-ocular skeletal muscle of lateral rectus" EXACT [OBOL:automatic]
synonym: "extraocular muscle of lateral rectus" EXACT [OBOL:automatic]
synonym: "extrinsic muscle of eyeball of lateral rectus" EXACT [OBOL:automatic]
synonym: "lateral rectus extra-ocular muscle" EXACT [OBOL:automatic]
synonym: "lateral rectus extra-ocular skeletal muscle" EXACT [OBOL:automatic]
synonym: "lateral rectus extrinsic muscle of eyeball" EXACT [OBOL:automatic]
xref: HOG:0001129
xref: MA:0001280
is_a: UBERON:0001601 ! implied link automatically realized ! extra-ocular muscle
relationship: part_of UBERON:0001603
intersection_of: UBERON:0001601 ! extra-ocular muscle
intersection_of: part_of UBERON:0001603 ! lateral rectus
[Term]
id: UBERON:0004848
name: respiratory system arterial endothelium
def: "An endothelium of artery that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius arterial endothelium" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius artery endothelium" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius endothelium of artery" EXACT [OBOL:automatic]
synonym: "arterial endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "arterial endothelium of respiratory system" EXACT [OBOL:automatic]
synonym: "artery endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "artery endothelium of respiratory system" EXACT [OBOL:automatic]
synonym: "endothelium of artery of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "endothelium of artery of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system artery endothelium" EXACT [OBOL:automatic]
synonym: "respiratory system endothelium of artery" EXACT [OBOL:automatic]
xref: MA:0001801
is_a: UBERON:0001917 ! implied link automatically realized ! endothelium of artery
is_a: UBERON:0004702 ! implied link automatically realized ! respiratory system blood vessel endothelium
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001917 ! endothelium of artery
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004849
name: respiratory system venous endothelium
def: "An endothelium of vein that is part of a respiratory system [Obol]." [OBOL:automatic]
synonym: "apparatus respiratorius endothelium of vein" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius vein endothelium" EXACT [OBOL:automatic]
synonym: "apparatus respiratorius venous endothelium" EXACT [OBOL:automatic]
synonym: "endothelium of vein of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "endothelium of vein of respiratory system" EXACT [OBOL:automatic]
synonym: "respiratory system endothelium of vein" EXACT [OBOL:automatic]
synonym: "respiratory system vein endothelium" EXACT [OBOL:automatic]
synonym: "vein endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "vein endothelium of respiratory system" EXACT [OBOL:automatic]
synonym: "venous endothelium of apparatus respiratorius" EXACT [OBOL:automatic]
synonym: "venous endothelium of respiratory system" EXACT [OBOL:automatic]
xref: MA:0001811
is_a: UBERON:0001919 ! implied link automatically realized ! endothelium of vein
is_a: UBERON:0004702 ! implied link automatically realized ! respiratory system blood vessel endothelium
relationship: part_of UBERON:0001004
intersection_of: UBERON:0001919 ! endothelium of vein
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0004850
name: lymph node endothelium
def: "An endothelium that is part of a lymph node [Obol]." [OBOL:automatic]
synonym: "endothelium of lymph node" EXACT [OBOL:automatic]
xref: MA:0000741
is_a: UBERON:0001986 ! implied link automatically realized ! endothelium
relationship: part_of UBERON:0000029
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0000029 ! lymph node
[Term]
id: UBERON:0004851
name: aorta endothelium
def: "An endothelium that is part of an aorta [Obol]." [OBOL:automatic]
synonym: "adult aorta endothelium" EXACT [OBOL:automatic]
synonym: "endothelium of adult aorta" EXACT [OBOL:automatic]
synonym: "endothelium of aorta" EXACT [OBOL:automatic]
synonym: "endothelium of trunk of aortic tree" EXACT [OBOL:automatic]
synonym: "endothelium of trunk of systemic arterial tree" EXACT [OBOL:automatic]
synonym: "trunk of aortic tree endothelium" EXACT [OBOL:automatic]
synonym: "trunk of systemic arterial tree endothelium" EXACT [OBOL:automatic]
xref: MA:0000701
is_a: UBERON:0001917 ! implied link automatically realized ! endothelium of artery
relationship: part_of UBERON:0000947
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0000947 ! aorta
[Term]
id: UBERON:0004852
name: cardiovascular system endothelium
def: "An endothelium that is part of a circulatory system [Obol]." [OBOL:automatic]
synonym: "circulatory system endothelium" EXACT [OBOL:automatic]
synonym: "endothelium of circulatory system" EXACT [OBOL:automatic]
xref: HOG:0001217
xref: MA:0000717
is_a: UBERON:0001986 ! implied link automatically realized ! endothelium
relationship: part_of UBERON:0001009
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0004854
name: gastrointestinal system mesentery
def: "A mesentery that is part of a digestive system [Obol]." [OBOL:automatic]
synonym: "digestive system mesentery" EXACT [OBOL:automatic]
synonym: "mesentery of digestive system" EXACT [OBOL:automatic]
synonym: "mesentery of gastrointestinal system" EXACT [OBOL:automatic]
xref: MA:0001900
is_a: UBERON:0002095 ! implied link automatically realized ! mesentery
is_a: UBERON:0004782 ! implied link automatically realized ! gastrointestinal system serosa
relationship: part_of UBERON:0001007
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0004857
name: skeletal muscle connective tissue
comment: no corresponding term in FMA? Skeletal muscle endomysium would be a subtype
synonym: "connective tissue of skeletal muscle" EXACT [OBOL:automatic]
synonym: "connective tissue of skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of skeletal muscle" EXACT [OBOL:automatic]
synonym: "portion of connective tissue of skeletal muscle tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle endomysium" EXACT [FMA:86022]
synonym: "skeletal muscle portion of connective tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle textus connectivus" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue connective tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue portion of connective tissue" EXACT [OBOL:automatic]
synonym: "skeletal muscle tissue textus connectivus" EXACT [OBOL:automatic]
synonym: "textus connectivus of skeletal muscle" EXACT [OBOL:automatic]
synonym: "textus connectivus of skeletal muscle tissue" EXACT [OBOL:automatic]
xref: FMA:86022
xref: MA:0002868
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
relationship: surrounds UBERON:0001134
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: surrounds UBERON:0001134 ! skeletal muscle tissue
[Term]
id: UBERON:0004858
name: cellular cartilage
xref: MA:0000105
is_a: UBERON:0002418 ! cartilage
[Term]
id: UBERON:0004859
name: eye gland
def: "A gland that is part of a eye [Obol]." [OBOL:automatic]
synonym: "gland of eye" EXACT [OBOL:automatic]
xref: MA:0000267
is_a: UBERON:0002530 ! implied link automatically realized ! gland
relationship: part_of UBERON:0000970
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0004860
name: brain ventricular zone
is_obsolete: true
consider: UBERON:0003053
[Term]
id: UBERON:0004861
name: right lung alveolus
def: "An alveolus that is part of a right lung [Obol]." [OBOL:automatic]
synonym: "alveolus of right lung" EXACT [OBOL:automatic]
xref: MA:0001786
is_a: UBERON:0002299 ! implied link automatically realized ! alveolus of lung
relationship: part_of UBERON:0002167
intersection_of: UBERON:0003215 ! alveolus
intersection_of: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0004862
name: left lung alveolus
def: "An alveolus that is part of a left lung [Obol]." [OBOL:automatic]
synonym: "alveolus of left lung" EXACT [OBOL:automatic]
xref: MA:0001777
is_a: UBERON:0002299 ! implied link automatically realized ! alveolus of lung
relationship: part_of UBERON:0002168
intersection_of: UBERON:0003215 ! alveolus
intersection_of: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0004863
name: thoracic sympathetic nerve trunk
def: "A sympathetic nerve trunk that is part of a thorax [Obol]." [OBOL:automatic]
synonym: "nerve trunk of sympathetic nervous system of thorax" EXACT [OBOL:automatic]
synonym: "nerve trunk of sympathetic part of autonomic division of nervous system of thorax" EXACT [OBOL:automatic]
synonym: "sympathetic nerve trunk of thorax" EXACT [OBOL:automatic]
synonym: "sympathetic nervous system nerve trunk of thorax" EXACT [OBOL:automatic]
synonym: "thorax nerve trunk of sympathetic nervous system" EXACT [OBOL:automatic]
synonym: "thorax nerve trunk of sympathetic part of autonomic division of nervous system" EXACT [OBOL:automatic]
synonym: "thorax sympathetic nerve trunk" EXACT [OBOL:automatic]
synonym: "thorax sympathetic nervous system nerve trunk" EXACT [OBOL:automatic]
xref: MA:0001165
is_a: UBERON:0004295 ! implied link automatically realized ! sympathetic nerve trunk
relationship: part_of UBERON:0000915
intersection_of: UBERON:0004295 ! sympathetic nerve trunk
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0004864
name: vasculature of retina
def: "A vasculature that is part of a retina [Obol]." [OBOL:automatic]
synonym: "retina vasculature" EXACT [OBOL:automatic]
synonym: "retinal vasculature" EXACT [OBOL:automatic]
synonym: "set of blood vessels of retina" EXACT [OBOL:automatic]
synonym: "set of retinal blood vessels" EXACT [FMA:76552]
xref: FMA:76552
is_a: UBERON:0002203 ! implied link automatically realized ! vasculature of eye
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000966
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0004865
name: teleost parietal bone
def: "Paired dermal bone that covers the hind part of the cranium, overlapping the dorsal edge of the sphenotic, pterotic, epiotic and the anterior edge of the supraoccipital. The parietal are overlapped anteriorly by the frontal." [ZFA:0000486]
comment: The parietal bone in teleost fish is the homolog of the frontal bone in tetrapods
synonym: "frontal bone" NARROW [FMA:52734]
synonym: "parietal bone" NARROW [TAO:0000486]
synonym: "post parietal" RELATED [ZFA:0000486]
synonym: "teleost parietal" EXACT []
xref: HOG:0001326
xref: TAO:0000486
xref: ZFA:0000486
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone
relationship: part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0004866
name: teleost frontal bone
def: "One of two large elongated paired dermal bones that roof the cranium and bear part of the supraorbital canal. The frontal bones cover the upper edge of the lateral ethmoid, orbitosphenoid and pterosphenoids and overlaps the parietal bone posteriorly." [ZFA:0000514]
comment: The frontal bone in teleost fish is the homolog of the parietal bone in tetrapods
synonym: "frontal bone" NARROW [TAO:0000514]
synonym: "teleost frontal" EXACT [TAO:0000514]
synonym: "teleost frontal bone" EXACT [TAO:0000514]
xref: TAO:0000514
xref: ZFA:0000514
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004766 ! implied link automatically realized ! cranial bone
relationship: part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0004867
name: orbital cavity
xref: FMA:84961
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001697 ! orbit
[Term]
id: UBERON:0004868
name: tapetum lucidum
def: "a layer of tissue in the eye of many vertebrate animals, that lies immediately behind or sometimes within the retina. It reflects visible light back through the retina, increasing the light available to the photoreceptors" [Wikipedia:Tapetum_lucidum]
is_a: UBERON:0000479 ! portion of tissue
relationship: adjacent_to UBERON:0000966 ! retina
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0004869
name: parietal organ
def: "A part of the epithalamus present in some animal species. The eye may be photoreceptive and is usually associated with the pineal gland, regulating circadian rhythmicity and hormone production for thermoregulation. The parietal eye is a part of the epithalamus, which can be divided into two major parts; the epiphysis (the pineal organ, or pineal gland if mostly endocrine) and the parietal organ (often called the parietal eye, or third eye if it is photoreceptive). It arises as an anterior evagination of the pineal organ or as a separate outgrowth of the roof of the diencephalon. In some species, it protrudes through the skull.[4] The parietal eye uses a different biochemical method of detecting light than rod cells or cone cells in a normal vertebrate eye[WP]." [Wikipedia:Parietal_eye]
synonym: "parietal eye" EXACT [Wikipedia:Parietal_eye]
synonym: "third eye" RELATED [Wikipedia:Parietal_eye]
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0001899 ! epithalamus
[Term]
id: UBERON:0004870
name: superficial cervical lymph nodes
def: "A group of nodes lying along the external jugular vein; they drain the skin and superficial structures over the region of the sternocleidomastoid muscle and anterior cervical regions. Efferent vessels drain to the deep cervical lymph nodes. Lymph nodes can be further subdivided into anterior and lateral groupings." [CL:tm, ref:Stedmans]
synonym: "prescapular lymph node" RELATED []
xref: MA:0002885
is_a: UBERON:0002429 ! cervical lymph node
is_a: UBERON:0003968 ! peripheral lymph node
[Term]
id: UBERON:0004871
name: somatic layer of lateral plate mesoderm
def: "Layer of lateral plate mesoderm that forms the future body wall[WP]." [Wikipedia:Lateral_plate_mesoderm#Division_into_layers]
xref: XAO:0000271
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0003081 ! lateral plate mesoderm
[Term]
id: UBERON:0004872
name: splanchnic layer of lateral plate mesoderm
def: "Layer of lateral plate mesoderm that forms the circulatory system and future gut wall[WP]." [Wikipedia:Lateral_plate_mesoderm#Division_into_layers]
synonym: "outer layer of lateral plate mesoderm" EXACT []
xref: XAO:0000276
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0003081 ! lateral plate mesoderm
[Term]
id: UBERON:0004873
name: splanchnopleure
def: "a structure created during embryogenesis when the lateral mesoderm splits into two layers. The inner (or splanchnic) layer adheres to the endoderm, and with it forms the splanchnopleure[WP]." [Wikipedia:Splanchnopleure]
xref: EHDAA:383
xref: EHDAA2:0001903
xref: EMAPA:16181
xref: HOG:0000558
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray16.png/200px-Gray16.png
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: overlaps UBERON:0000925 ! endoderm
relationship: part_of UBERON:0003081 ! lateral plate mesoderm
[Term]
id: UBERON:0004874
name: somatopleure
def: "a structure created during embryogenesis when the lateral mesoderm splits into two layers. The outer (or somatic) layer becomes applied to the inner surface of the ectoderm, and with it forms the somatopleure.[WP]." [Wikipedia:Somatopleure]
xref: EHDAA:381
xref: EHDAA2:0001847
xref: EMAPA:16180
xref: HOG:0000557
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/28/Gray16.png/200px-Gray16.png
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: overlaps UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0003081 ! lateral plate mesoderm
[Term]
id: UBERON:0004875
name: nephrogenic cord
def: "a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord]
comment: part_of or develops_from urogenital ridge?
xref: FMA:72168
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0004876 ! urogenital ridge
[Term]
id: UBERON:0004876
name: urogenital ridge
def: "An embryological structure which give rise to a portion of the external genitalia. It differentiates into two structures: gonadal ridge -- medial -- primarily reproductive system; nephrogenic cord -- lateral -- primarily urinary system. In the female, the urogenital folds become the labia minora. In contrast, the labia majora are formed by the labioscrotal folds; In the male, they form the spongy urethra and a portion of the shaft of the penis, not including the glans.[WP]." [Wikipedia:Urogenital_folds]
comment: Less commonly, urogenital fold refers to the fold in the mesonephros which is the precursor of e.g. the suspensory ligament of the ovary. This is the case in older versions of Gray's anatomy[WP]
synonym: "urogenital fold" EXACT []
xref: BTO:0001402
xref: EMAPA:30888
xref: EMAPA:30899
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0003064 ! intermediate mesoderm
relationship: develops_into UBERON:0004176 ! external reproductive organ
[Term]
id: UBERON:0004877
name: visceral endoderm
xref: BTO:0003487
xref: EMAPA:16058
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: develops_from UBERON:0000925 ! endoderm
[Term]
id: UBERON:0004878
name: distal visceral endoderm
def: "precursors of the anterior visceral endoderm that arises at the distal tip of the embryo[MP]" [MP:0010126]
is_a: UBERON:0000478 ! extraembryonic structure
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: develops_from UBERON:0000925 ! endoderm
[Term]
id: UBERON:0004879
name: marginal zone of embryo
synonym: "marginal zone" BROAD []
xref: XAO:0000068
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0004880
name: chordamesoderm
def: "The central region of trunk mesoderm. This tissue forms the notochord" [UBERON:cjm]
comment: note that WP treats this as synonym of axial mesoderm
synonym: "axial chorda mesoderm" EXACT [ZFA:0000091]
synonym: "chorda mesoderm" EXACT []
synonym: "presumptive notochord" EXACT [ZFA:0000091]
xref: AAO:0000478
xref: ZFA:0000091
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0003068 ! axial mesoderm
[Term]
id: UBERON:0004881
name: prechordal mesoderm
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0003068 ! axial mesoderm
[Term]
id: UBERON:0004882
name: eponychium
def: "Thickened layer of skin surrounding fingernails and toenails. Beneath the cuticle is a thin layer of a membrane known as the pterygium. The function is to protect the area between the nail and epidermis from exposure to harmful bacteria. The vascularization pattern is similar to that of perionychium. The eponychium is the end of the proximal fold that folds back upon itself to shed an epidermal layer of skin onto the newly formed nail plate. This layer of non-living, almost invisible skin is the cuticle that 'rides out' on the surface of the nail plate. Together, the eponychium and the cuticle form a protective seal. The cuticle on the nail plate is dead cells and is often removed during manicure, but the eponychium is living cells and should not be touched.[6] The perionyx is the projecting edge of the eponychium covering the proximal strip of the lunula[WP]." [Wikipedia:Eponychium]
xref: FMA:77859
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/9/9f/Fingernail_label.jpg/200px-Fingernail_label.jpg
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004923 ! organ component layer
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0004883
name: lung mesenchyme
def: "the mass of tissue made up of mesenchymal cells in the lung." [LG:0012600]
synonym: "lung-associated mesenchyme" EXACT []
synonym: "mesenchyme of lung" EXACT [OBOL:automatic]
xref: EMAPA:17654
xref: EMAPA:17662
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
relationship: part_of UBERON:0002048
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002048 ! lung
relationship: develops_from UBERON:0003081 ! lateral plate mesoderm
[Term]
id: UBERON:0004884
name: lobar bronchus mesenchyme
def: "A mesenchyme that is part of a lobar bronchus [Obol]." [OBOL:automatic]
synonym: "mesenchyme of lobar bronchus" EXACT [OBOL:automatic]
is_a: UBERON:0004883 ! implied link automatically realized ! lung mesenchyme
relationship: part_of UBERON:0002183
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0004885
name: hilum
alt_id: UBERON:0004460
def: "An anatomical cavity, depression or pit where structures are attached." [Wikipedia:Hilum]
synonym: "hilus" EXACT [Wikipedia:Hilum]
xref: FMA:57836
is_a: UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0004886
name: lung hilus
def: "A depression on the surface of the lung where the bronchus, blood vessels and nerves enter." [GOC:lung_mtg, ISBN:0721662544 "Dorland's Illustrated Medical Dictionary"]
synonym: "hilum of lung" EXACT []
synonym: "hilus of lung" EXACT [OBOL:automatic]
synonym: "lung hilum" EXACT [OBOL:automatic]
synonym: "pulmonary hilum" EXACT [FMA:7330]
synonym: "pulmonary hilus" EXACT [OBOL:automatic]
xref: FMA:7330
is_a: UBERON:0004885 ! implied link automatically realized ! hilum
relationship: part_of UBERON:0002048
intersection_of: UBERON:0004885 ! hilum
intersection_of: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0004887
name: left lung hilus
def: "A lung hilus that is part of the left lung." [OBOL:automatic]
synonym: "hilum of left lung" EXACT []
synonym: "hilus of left lung" EXACT [OBOL:automatic]
synonym: "left lung hilum" EXACT [OBOL:automatic]
synonym: "left pulmonary hilum" EXACT [FMA:9751]
synonym: "left pulmonary hilus" EXACT [OBOL:automatic]
xref: EHDAA:4965
xref: EHDAA2:0000962
xref: EMAPA:17980
xref: FMA:9751
xref: HOG:0000483
xref: MA:0001781
is_a: UBERON:0004886 ! implied link automatically realized ! lung hilus
relationship: part_of UBERON:0002168
intersection_of: UBERON:0004886 ! lung hilus
intersection_of: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0004888
name: right lung hilus
def: "A lung hilus that is part of the right lung." [OBOL:automatic]
synonym: "hilum of right lung" EXACT []
synonym: "hilus of right lung" EXACT [OBOL:automatic]
synonym: "right lung hilum" EXACT [OBOL:automatic]
synonym: "right pulmonary hilum" EXACT [FMA:7330]
synonym: "right pulmonary hilus" EXACT [OBOL:automatic]
xref: EHDAA:4995
xref: EHDAA2:0001756
xref: EMAPA:17996
xref: FMA:7456
xref: HOG:0000482
xref: MA:0001790
is_a: UBERON:0004886 ! implied link automatically realized ! lung hilus
relationship: part_of UBERON:0002167
intersection_of: UBERON:0004886 ! lung hilus
intersection_of: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0004889
name: lobar bronchus vasculature
def: "Vasculature that is composed of the tubule structures that carry blood or lymph in the lungs" [LG:0012616]
is_a: UBERON:0000102 ! implied link automatically realized ! lung vasculature
relationship: part_of UBERON:0002183
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0004890
name: right lung accessory lobe
def: "A specialized lobe of the right lung that extends to the left side of the organism" [LG:0012619]
comment: not in humans
synonym: "right lung postcaval lobe" EXACT [MA:0000427]
xref: EHDAA2:0001731
xref: HOG:0000831
xref: MA:0000427
is_a: UBERON:0000101 ! lobe of lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0004891
name: lobar bronchus bronchiole
def: "A bronchiole of the lobar bronchus" [OBOL:automatic]
is_a: UBERON:0002186 ! implied link automatically realized ! bronchiole
relationship: part_of UBERON:0002183
intersection_of: UBERON:0002186 ! bronchiole
intersection_of: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0004892
name: lobar bronchus alveolar system
def: "The lobar bronchus alveolar system is where molecules of oxygen and carbon dioxide are passively exchanged, by diffusion, between the gaseous environment and the blood in the lobar bronchus" [LG:0012622]
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0004893
name: interalveolar septum
def: "A the thin septum that separates adjacent pulmonary alveoli, containing connective tissue constituents of the respiratory tissue and the capillary network of the blood supply of the lung." [LG:0012625, Wikipedia:Alveolar_septum]
synonym: "alveolar septum" EXACT [UBERON:cjm]
synonym: "wall of pulmonary alveolus" EXACT [FMA:14117]
xref: BTO:0003149
xref: FMA:14117
xref: MA:0000421
is_a: UBERON:0003037 ! implied link automatically realized ! septum
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002299
intersection_of: UBERON:0003037 ! septum
intersection_of: part_of UBERON:0002299 ! alveolus of lung
[Term]
id: UBERON:0004894
name: alveolar wall
def: "A wall that contains the alveoli" [LG:0012626]
xref: FMA:14117
xref: MA:0002568
is_a: UBERON:0000060 ! implied link automatically realized ! anatomical wall
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002299
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0002299 ! alveolus of lung
[Term]
id: UBERON:0004895
name: alveolar smooth muscle
def: "Alveolar smooth muscle is a type of non-striated muscle, found within the walls of the alveolus" [LG:0012628]
xref: MA:0002759
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0004225 ! implied link automatically realized ! respiratory system smooth muscle
relationship: part_of UBERON:0002299
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002299 ! alveolus of lung
[Term]
id: UBERON:0004896
name: right lung accessory lobe lobar bronchus
def: "The right lung accessory lobe lobar bronchus is the major airway within the right lung accessory lobe that starts at the division of the bronchus on the right side and ends at the point of its own subdivision into tertiary or segmental bronchi" [LG:0012636]
xref: EHDAA2:0001736
xref: HOG:0000239
is_a: UBERON:0003404 ! implied link automatically realized ! lobar bronchus of right lung
relationship: part_of UBERON:0004890
intersection_of: UBERON:0002183 ! lobar bronchus
intersection_of: part_of UBERON:0004890 ! right lung accessory lobe
[Term]
id: UBERON:0004897
name: right lung accessory lobe lobar bronchus mesynchyme
def: "The right lung accessory lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung accessory lobe lobar bronchus" [LG:0012640]
is_a: UBERON:0004901 ! implied link automatically realized ! right lung lobar bronchus mesynchyme
relationship: part_of UBERON:0003404
relationship: part_of UBERON:0004890
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003404 ! lobar bronchus of right lung
intersection_of: part_of UBERON:0004890 ! right lung accessory lobe
[Term]
id: UBERON:0004898
name: right lung caudal lobe lobar bronchus mesynchyme development
is_obsolete: true
[Term]
id: UBERON:0004899
name: right lung cranial lobe lobar bronchus mesynchyme
def: "The right lung cranial lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung cranial lobe lobar bronchus" [LG:0012659]
is_a: UBERON:0004901 ! implied link automatically realized ! right lung lobar bronchus mesynchyme
relationship: part_of UBERON:0002170
relationship: part_of UBERON:0003404
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002170 ! upper lobe of right lung
intersection_of: part_of UBERON:0003404 ! lobar bronchus of right lung
[Term]
id: UBERON:0004900
name: right lung middle lobe lobar bronchus mesynchyme
def: "The right lung middle lobe lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung middle lobe lobar bronchus" [LG:0012672]
is_a: UBERON:0004901 ! implied link automatically realized ! right lung lobar bronchus mesynchyme
relationship: part_of UBERON:0002174
relationship: part_of UBERON:0003404
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002174 ! middle lobe of lung
intersection_of: part_of UBERON:0003404 ! lobar bronchus of right lung
[Term]
id: UBERON:0004901
name: right lung lobar bronchus mesynchyme
def: "The right lung lobar bronchus mesenchyme is a type of tissue made up of loosely-packed mesenchymal cells in the right lung lobar bronchus" [LG:0012681]
is_a: UBERON:0004884 ! implied link automatically realized ! lobar bronchus mesenchyme
relationship: part_of UBERON:0002167
relationship: part_of UBERON:0002183
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002167 ! right lung
intersection_of: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0004902
name: urogenital sinus epithelium
def: "An epithelium that is part of a primitive urogenital sinus [Obol]." [OBOL:automatic]
synonym: "epithelium of urogenital sinus" EXACT [OBOL:automatic]
xref: EMAPA:30882
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0000164
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000164 ! primitive urogenital sinus
[Term]
id: UBERON:0004903
name: bronchoalveolar duct junction
def: "A branch point connecting the respiratory bronchioles to the alveolar ducts[MP]." [MP:0004390]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002173 ! alveolar duct
relationship: part_of UBERON:0002186 ! bronchiole
[Term]
id: UBERON:0004904
name: optic nerve
def: "A nerve that connects the eye to the brain and carries the impulses formed by the retina to the visual cortex of the brain[BTO]." [BTO:0000966]
comment: obsolete?
subset: grouping_class
xref: BTO:0000966
xref: EHDAA2:0001314
xref: FBbt:00001956
xref: TADS:0000232
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
relationship: continuous_with UBERON:0000966
intersection_of: UBERON:0001021 ! nerve
intersection_of: continuous_with UBERON:0000966 ! retina
relationship: part_of UBERON:0002104 ! visual system
[Term]
id: UBERON:0004905
name: joint
def: "anatomical cluster that connects limbs or skeletal elements." []
xref: FBbt:00004645
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0004906
name: ectodermal gut
def: "A portion of the gut that is derived from ectoderm." [GO:0007439]
is_a: UBERON:0000481 ! implied link automatically realized ! multi-tissue structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0000924
relationship: part_of UBERON:0001555
intersection_of: UBERON:0000481 ! multi-tissue structure
intersection_of: develops_from UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0004907
name: lower digestive tract
def: "the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract]
comment: WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L
subset: uberon_slim
synonym: "gut" BROAD [GO:0048565]
synonym: "lower gastrointestinal tract" EXACT []
synonym: "lower GI tract" EXACT []
xref: EHDAA2:0000726
xref: FMA:49179
xref: galen:LowerGastrointestinalTract
xref: MA:0000917
xref: ncithesaurus:Lower_Gastrointestinal_Tract
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: develops_from UBERON:0001046 ! hindgut
[Term]
id: UBERON:0004908
name: upper digestive tract
def: "the region of the digestive tract extending from the mouth cavity through pharynx esophagus stomach and duodenum." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract]
comment: WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L
subset: uberon_slim
synonym: "upper gastrointestinal tract" EXACT []
synonym: "upper GI tract" EXACT []
xref: FMA:49177
xref: ncithesaurus:Upper_Gastrointestinal_Tract
is_a: UBERON:0004921 ! subdivision of digestive tract
relationship: develops_from UBERON:0001041 ! foregut
[Term]
id: UBERON:0004909
name: epithelium of gonad
def: "An epithelium surrounding a gonad." [OBOL:automatic]
comment: Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts
synonym: "gonad epithelium" EXACT [OBOL:automatic]
synonym: "gonadal epithelium" EXACT [OBOL:automatic]
xref: EHDAA:4032
xref: EHDAA:5931
xref: FBbt:00004859
xref: ncithesaurus:Germinal_Epithelium
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000991
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000991 ! gonad
[Term]
id: UBERON:0004910
name: epithelium of testis
def: "An epithelium surrounding a testis." [OBOL:automatic]
comment: Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts
synonym: "testis epithelium" EXACT [OBOL:automatic]
synonym: "testis sheath" NARROW SENSU [FBbt:00004955]
xref: FBbt:00004955
is_a: UBERON:0004909 ! implied link automatically realized ! epithelium of gonad
relationship: part_of UBERON:0000473
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000473 ! testis
[Term]
id: UBERON:0004911
name: epithelium of ovary
def: "An epithelium surrounding an ovary." [OBOL:automatic]
comment: Note that after reasoning this should subsume the more specific germinal epithelium classes. We include the fly structure here although it is not clear if the sheath is an epithelium or a multi-tissue structure that includes epithelium as parts
synonym: "ovarian epithelium" EXACT [OBOL:automatic]
synonym: "ovarian sheath" NARROW SENSU [FBbt:00004896]
synonym: "ovary epithelium" EXACT [OBOL:automatic]
xref: FBbt:00004896
is_a: UBERON:0004909 ! implied link automatically realized ! epithelium of gonad
relationship: part_of UBERON:0000992
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000992 ! ovary
[Term]
id: UBERON:0004912
name: biliary bud
def: "a precursor to a liver[WP]." [Wikipedia:Hepatic_diverticulum]
synonym: "hepatic diverticulum" EXACT []
synonym: "liver diverticulum" EXACT []
xref: EHDAA:1530
xref: EHDAA2:0000171
xref: EMAPA:16561
xref: HOG:0001351
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/4f/Gray1088.png/200px-Gray1088.png
xref: XAO:0000101
is_a: UBERON:0003914 ! epithelial tube
relationship: develops_from UBERON:0001041 ! foregut
[Term]
id: UBERON:0004913
name: hepatopancreatic ampulla
def: "A dilation of the duodenal papilla that is the opening of the juncture of the common bile duct and the main pancreatic duct." [Wikipedia:Ampulla_of_Vater]
synonym: "ampulla of Vater" EXACT []
synonym: "biliaropancreatic ampulla" EXACT []
synonym: "Vater's ampulla" EXACT []
xref: FMA:15076
xref: GAID:283
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/1/1e/Biliary_system_new.svg/200px-Biliary_system_new.svg.png
xref: ZFA:0005167
is_a: UBERON:0000058 ! duct
is_a: UBERON:0003928 ! implied link automatically realized ! digestive system duct
relationship: part_of UBERON:0004914 ! duodenal papilla
[Term]
id: UBERON:0004914
name: duodenal papilla
def: "." [Wikipedia:Major_duodenal_papilla, Wikipedia:Minor_duodenal_papilla]
synonym: "papilla of duodenum" EXACT []
xref: EMAPA:18662
xref: EMAPA:18853
xref: FMA:15953
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/Gray1057.png/200px-Gray1057.png
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002114 ! duodenum
[Term]
id: UBERON:0004915
name: sphincter of hepatopancreatic ampulla
def: "muscular valve that controls the flow of digestive juices (bile and pancreatic juice) through the ampulla of Vater into the second part of the duodenum. Relaxed by the hormone Cholecystokinin (CCK) via vasoactive intestinal polypeptide (VIP).[WP]." [Wikipedia:Sphincter_of_Oddi]
synonym: "Oddi's sphincter" EXACT []
synonym: "sphincter of Oddi" EXACT []
xref: FMA:15077
xref: GAID:285
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/4/43/Gray1057.png/200px-Gray1057.png
is_a: UBERON:0004590 ! implied link automatically realized ! sphincter muscle
relationship: part_of UBERON:0004913
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0004913 ! hepatopancreatic ampulla
[Term]
id: UBERON:0004916
name: anal sphincter
def: "A sphincter muscle in the anal part of the perineum." [OBOL:automatic]
is_a: UBERON:0004519 ! implied link automatically realized ! muscle of anal triangle
is_a: UBERON:0004590 ! implied link automatically realized ! sphincter muscle
relationship: part_of UBERON:0001353
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0001353 ! anal region
[Term]
id: UBERON:0004917
name: urethral sphincter
def: "A sphincter muscle surrounding the urethra." [Wikipedia:Urethral_sphincter]
synonym: "sphincter muscle of urethra" EXACT []
synonym: "sphincter of urethra" EXACT []
synonym: "urethral sphincter muscle" EXACT []
xref: MA:0002650
is_a: UBERON:0003829 ! implied link automatically realized ! urethra muscle
is_a: UBERON:0004590 ! implied link automatically realized ! sphincter muscle
relationship: part_of UBERON:0000057
intersection_of: UBERON:0004590 ! sphincter muscle
intersection_of: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0004918
name: internal urethral sphincter
def: "a urethral sphincter muscle which constricts the internal urethral orifice. It is the junction of the urethra with the urinary bladder. The muscle is made of smooth muscle, so therefore it is under involuntary control. It is kept tonically contracted by the sympathetic nervous system and during micturition, is relaxed via the parasympathetic nervous system. This is the primary muscle for preventing the release of urine[WP]." [Wikipedia:Internal_sphincter_muscle_of_urethra]
synonym: "internal sphincter muscle of urethra" EXACT []
synonym: "internal sphincter of urethra" EXACT []
synonym: "internal urethral sphincter muscle" EXACT []
synonym: "preprostatic sphincter" EXACT [FMA:45769]
synonym: "supracollicular sphincter" EXACT [FMA:45769]
xref: FMA:45769
is_a: UBERON:0004590 ! sphincter muscle
is_a: UBERON:0004917 ! implied link automatically realized ! urethral sphincter
relationship: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0004919
name: external urethral sphincter
def: "." [Wikipedia:External_sphincter_muscle_of_female_urethra, Wikipedia:External_sphincter_muscle_of_male_urethra]
comment: TODO male/female subclasses
synonym: "external sphincter muscle of urethra" EXACT []
synonym: "external sphincter of urethra" EXACT []
synonym: "external urethral sphincter muscle" EXACT []
xref: FMA:85274
is_a: UBERON:0004590 ! sphincter muscle
is_a: UBERON:0004917 ! implied link automatically realized ! urethral sphincter
relationship: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0004920
name: mesoderm of gonad
def: "A mesoderm that is part of a gonad [Obol]." [OBOL:automatic]
synonym: "gonad mesoderm" EXACT [OBOL:automatic]
synonym: "gonadal mesoderm" EXACT [OBOL:automatic]
is_obsolete: true
[Term]
id: UBERON:0004921
name: subdivision of digestive tract
comment: intended to denote both embryonic and adult structures. TODO
xref: FMA:71131
is_a: UBERON:0000481 ! multi-tissue structure
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0004922
name: subventricular zone
def: "A paired brain structure situated throughout the lateral walls of the lateral ventricles. Along with the subgranular zone of dentate gyrus, subventricular zone serves as a source of neural stem cells in the process of adult neurogenesis. It harbors the largest population of proliferating cells in the adult brain of rodents, monkeys and humans. Neurons generated in SVZ travel to the olfactory bulb via the rostral migratory stream[BTO]. a paired brain structure situated throughout the lateral walls of the lateral ventricles.[2] It has been associated with having four distinct layers[3] of variable thickness and cell density, as well as cellular composition[WP]." [Wikipedia:Subventricular_zone]
synonym: "brain subventricular zone" EXACT [MA:0000817]
synonym: "subventricular zone of brain" EXACT []
synonym: "SVZ" EXACT []
xref: BTO:0003090
xref: MA:0000817
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: develops_from UBERON:0004023 ! ganglionic eminence
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0004923
name: organ component layer
xref: FMA:82485
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0004924
name: submucosa of pharynx
def: "A submucosa that is part of a pharynx [Obol]." [OBOL:automatic]
synonym: "pharynx submucosa" EXACT [OBOL:automatic]
xref: FMA:75144
is_a: UBERON:0004777 ! implied link automatically realized ! respiratory system submucosa
relationship: part_of UBERON:0001042
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0004925
name: submucosa of laryngopharynx
def: "A submucosa that is part of a hypopharynx [Obol]." [OBOL:automatic]
synonym: "hypopharynx submucosa" EXACT [OBOL:automatic]
synonym: "laryngeal pharynx submucosa" EXACT [OBOL:automatic]
synonym: "laryngopharynx submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of hypopharynx" EXACT [OBOL:automatic]
synonym: "submucosa of laryngeal pharynx" EXACT [OBOL:automatic]
xref: FMA:55072
is_a: UBERON:0004924 ! implied link automatically realized ! submucosa of pharynx
relationship: part_of UBERON:0001051
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001051 ! hypopharynx
[Term]
id: UBERON:0004926
name: submucosa of cystic duct
def: "A submucosa that is part of a cystic duct [Obol]." [OBOL:automatic]
synonym: "cystic duct submucosa" EXACT [OBOL:automatic]
xref: FMA:18013
is_a: UBERON:0004938 ! implied link automatically realized ! submucosa of biliary tree
relationship: part_of UBERON:0001152
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001152 ! cystic duct
[Term]
id: UBERON:0004927
name: submucosa of cecum
def: "A submucosa that is part of a cecum [Obol]." [OBOL:automatic]
synonym: "caecum submucosa" EXACT [OBOL:automatic]
synonym: "cecum submucosa" EXACT [OBOL:automatic]
synonym: "intestinum crassum caecum submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of caecum" EXACT [OBOL:automatic]
synonym: "submucosa of intestinum crassum caecum" EXACT [OBOL:automatic]
xref: FMA:14999
is_a: UBERON:0004929 ! implied link automatically realized ! submucosa of ascending colon
relationship: part_of UBERON:0001153
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001153 ! cecum
[Term]
id: UBERON:0004928
name: submucosa of appendix
def: "A submucosa that is part of an appendix [Obol]." [OBOL:automatic]
synonym: "appendix submucosa" EXACT [OBOL:automatic]
synonym: "caecal appendix submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of caecal appendix" EXACT [OBOL:automatic]
synonym: "submucosa of vermiform appendix" EXACT [OBOL:automatic]
synonym: "submucosa of vermix" EXACT [OBOL:automatic]
synonym: "vermiform appendix submucosa" EXACT [OBOL:automatic]
synonym: "vermix submucosa" EXACT [OBOL:automatic]
xref: FMA:14992
is_a: UBERON:0004927 ! implied link automatically realized ! submucosa of cecum
relationship: part_of UBERON:0001154
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001154 ! appendix
[Term]
id: UBERON:0004929
name: submucosa of ascending colon
def: "A submucosa that is part of an ascending colon [Obol]." [OBOL:automatic]
synonym: "ascending colon submucosa" EXACT [OBOL:automatic]
xref: FMA:15006
is_a: UBERON:0003331 ! implied link automatically realized ! submucosa of colon
relationship: part_of UBERON:0001156
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001156 ! ascending colon
[Term]
id: UBERON:0004930
name: submucosa of transverse colon
def: "A submucosa that is part of a transverse colon [Obol]." [OBOL:automatic]
synonym: "transverse colon submucosa" EXACT [OBOL:automatic]
xref: FMA:15013
is_a: UBERON:0003331 ! implied link automatically realized ! submucosa of colon
relationship: part_of UBERON:0001157
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001157 ! transverse colon
[Term]
id: UBERON:0004931
name: submucosa of descending colon
def: "A submucosa that is part of a descending colon [Obol]." [OBOL:automatic]
synonym: "descending colon submucosa" EXACT [OBOL:automatic]
xref: FMA:15020
is_a: UBERON:0003331 ! implied link automatically realized ! submucosa of colon
relationship: part_of UBERON:0001158
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001158 ! descending colon
[Term]
id: UBERON:0004932
name: submucosa of sigmoid colon
def: "A submucosa that is part of a sigmoid colon [Obol]." [OBOL:automatic]
synonym: "sigmoid colon submucosa" EXACT [OBOL:automatic]
xref: FMA:15027
is_a: UBERON:0003331 ! implied link automatically realized ! submucosa of colon
relationship: part_of UBERON:0001159
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001159 ! sigmoid colon
[Term]
id: UBERON:0004933
name: submucosa of fundus of stomach
def: "A submucosa that is part of a fundus of stomach [Obol]." [OBOL:automatic]
synonym: "fundus gastricus (ventricularis) submucosa" EXACT [OBOL:automatic]
synonym: "fundus of stomach submucosa" EXACT [OBOL:automatic]
synonym: "stomach fundus submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of fundus gastricus (ventricularis)" EXACT [OBOL:automatic]
synonym: "submucosa of stomach fundus" EXACT [OBOL:automatic]
xref: FMA:17058
is_a: UBERON:0001200 ! implied link automatically realized ! submucosa of stomach
relationship: part_of UBERON:0001160
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001160 ! fundus of stomach
[Term]
id: UBERON:0004934
name: submucosa of body of stomach
def: "A submucosa that is part of a body of stomach [Obol]." [OBOL:automatic]
synonym: "body of stomach submucosa" EXACT [OBOL:automatic]
synonym: "corpus gastricum (ventriculare) submucosa" EXACT [OBOL:automatic]
synonym: "gastric body submucosa" EXACT [OBOL:automatic]
synonym: "stomach body submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of corpus gastricum (ventriculare)" EXACT [OBOL:automatic]
synonym: "submucosa of gastric body" EXACT [OBOL:automatic]
synonym: "submucosa of stomach body" EXACT [OBOL:automatic]
xref: FMA:17059
is_a: UBERON:0001200 ! implied link automatically realized ! submucosa of stomach
relationship: part_of UBERON:0001161
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001161 ! body of stomach
[Term]
id: UBERON:0004935
name: submucosa of cardia of stomach
def: "A submucosa that is part of a cardia of stomach [Obol]." [OBOL:automatic]
synonym: "cardia of stomach submucosa" EXACT [OBOL:automatic]
synonym: "cardial part of stomach submucosa" EXACT [OBOL:automatic]
synonym: "gastric cardia submucosa" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) submucosa" EXACT [OBOL:automatic]
synonym: "stomach cardiac region submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "submucosa of gastric cardia" EXACT [OBOL:automatic]
synonym: "submucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "submucosa of stomach cardiac region" EXACT [OBOL:automatic]
xref: FMA:17457
is_a: UBERON:0001200 ! implied link automatically realized ! submucosa of stomach
relationship: part_of UBERON:0001162
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001162 ! cardia of stomach
[Term]
id: UBERON:0004936
name: submucosa of pyloric antrum
def: "A submucosa that is part of a pyloric antrum [Obol]." [OBOL:automatic]
synonym: "antrum of stomach submucosa" EXACT [OBOL:automatic]
synonym: "pyloric antrum submucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric antrum submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of antrum of stomach" EXACT [OBOL:automatic]
synonym: "submucosa of stomach pyloric antrum" EXACT [OBOL:automatic]
xref: FMA:17060
is_a: UBERON:0004937 ! implied link automatically realized ! submucosa of pylorus
relationship: part_of UBERON:0001165
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001165 ! pyloric antrum
[Term]
id: UBERON:0004937
name: submucosa of pylorus
def: "A submucosa that is part of a pylorus [Obol]." [OBOL:automatic]
synonym: "pyloric part of stomach submucosa" EXACT [OBOL:automatic]
synonym: "pylorus submucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric region submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "submucosa of stomach pyloric region" EXACT [OBOL:automatic]
xref: FMA:17462
is_a: UBERON:0001200 ! implied link automatically realized ! submucosa of stomach
relationship: part_of UBERON:0001166
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001166 ! pylorus
[Term]
id: UBERON:0004938
name: submucosa of biliary tree
def: "A submucosa that is part of a biliary tree [Obol]." [OBOL:automatic]
synonym: "biliary tract submucosa" EXACT [OBOL:automatic]
synonym: "biliary tree submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of biliary tract" EXACT [OBOL:automatic]
xref: FMA:18009
is_a: UBERON:0000009 ! implied link automatically realized ! submucosa
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001173
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001173 ! biliary tree
[Term]
id: UBERON:0004939
name: submucosa of common bile duct
def: "A submucosa that is part of a common bile duct [Obol]." [OBOL:automatic]
synonym: "common bile duct submucosa" EXACT [OBOL:automatic]
synonym: "ductus choledochus (biliaris) submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of ductus choledochus (biliaris)" EXACT [OBOL:automatic]
xref: FMA:18011
is_a: UBERON:0004938 ! implied link automatically realized ! submucosa of biliary tree
relationship: part_of UBERON:0001174
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001174 ! common bile duct
[Term]
id: UBERON:0004940
name: submucosa of common hepatic duct
def: "A submucosa that is part of a common hepatic duct [Obol]." [OBOL:automatic]
synonym: "common hepatic duct submucosa" EXACT [OBOL:automatic]
synonym: "hepatic duct submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of hepatic duct" EXACT [OBOL:automatic]
xref: FMA:18014
is_a: UBERON:0000009 ! implied link automatically realized ! submucosa
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001175
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001175 ! common hepatic duct
[Term]
id: UBERON:0004941
name: submucosa of right hepatic duct
def: "A submucosa that is part of a right hepatic duct [Obol]." [OBOL:automatic]
synonym: "right hepatic duct submucosa" EXACT [OBOL:automatic]
xref: FMA:18015
is_a: UBERON:0000009 ! implied link automatically realized ! submucosa
relationship: part_of UBERON:0001176
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001176 ! right hepatic duct
[Term]
id: UBERON:0004942
name: submucosa of left hepatic duct
def: "A submucosa that is part of a left hepatic duct [Obol]." [OBOL:automatic]
synonym: "left hepatic duct submucosa" EXACT [OBOL:automatic]
xref: FMA:18017
is_a: UBERON:0000009 ! implied link automatically realized ! submucosa
relationship: part_of UBERON:0001177
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001177 ! left hepatic duct
[Term]
id: UBERON:0004943
name: submucosa of urinary bladder
def: "A submucosa that is part of a urinary bladder [Obol]." [OBOL:automatic]
synonym: "bladder submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of bladder" EXACT [OBOL:automatic]
synonym: "urinary bladder submucosa" EXACT [OBOL:automatic]
xref: FMA:15929
is_a: UBERON:0000009 ! implied link automatically realized ! submucosa
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001255
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0004944
name: submucosa of trigone of urinary bladder
def: "A submucosa that is part of a trigone of urinary bladder [Obol]." [OBOL:automatic]
synonym: "deep trigone submucosa" EXACT [OBOL:automatic]
synonym: "Lieutaud ' s trigone submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of deep trigone" EXACT [OBOL:automatic]
synonym: "submucosa of Lieutaud ' s trigone" EXACT [OBOL:automatic]
synonym: "submucosa of trigone of bladder" EXACT [OBOL:automatic]
synonym: "submucosa of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "submucosa of vesical trigone" EXACT [OBOL:automatic]
synonym: "trigone of bladder submucosa" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder submucosa" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone submucosa" EXACT [OBOL:automatic]
synonym: "vesical trigone submucosa" EXACT [OBOL:automatic]
xref: FMA:17852
is_a: UBERON:0004943 ! implied link automatically realized ! submucosa of urinary bladder
relationship: part_of UBERON:0001257
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001257 ! trigone of urinary bladder
[Term]
id: UBERON:0004945
name: submucosa of neck of urinary bladder
def: "A submucosa that is part of a neck of urinary bladder [Obol]." [OBOL:automatic]
synonym: "bladder neck submucosa" EXACT [OBOL:automatic]
synonym: "neck of bladder submucosa" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of bladder neck" EXACT [OBOL:automatic]
synonym: "submucosa of neck of bladder" EXACT [OBOL:automatic]
synonym: "submucosa of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "submucosa of vesical neck" EXACT [OBOL:automatic]
synonym: "urinary bladder neck submucosa" EXACT [OBOL:automatic]
synonym: "vesical neck submucosa" EXACT [OBOL:automatic]
xref: FMA:17851
is_a: UBERON:0004943 ! implied link automatically realized ! submucosa of urinary bladder
relationship: part_of UBERON:0001258
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001258 ! neck of urinary bladder
[Term]
id: UBERON:0004946
name: submucosa of ileum
def: "A submucosa that is part of a ileum [Obol]." [OBOL:automatic]
synonym: "ileum submucosa" EXACT [OBOL:automatic]
xref: FMA:14957
is_a: UBERON:0001205 ! implied link automatically realized ! submucosa of small intestine
relationship: part_of UBERON:0002116
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002116 ! ileum
[Term]
id: UBERON:0004947
name: submucosa of right main bronchus
def: "A submucosa that is part of a right main bronchus [Obol]." [OBOL:automatic]
synonym: "right bronchus submucosa" EXACT [OBOL:automatic]
synonym: "right main bronchus submucosa" EXACT [OBOL:automatic]
synonym: "right principal bronchus submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of right bronchus" EXACT [OBOL:automatic]
synonym: "submucosa of right principal bronchus" EXACT [OBOL:automatic]
xref: FMA:13139
is_a: UBERON:0004949 ! implied link automatically realized ! submucosa of main bronchus
relationship: part_of UBERON:0002177
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002177 ! right main bronchus
[Term]
id: UBERON:0004948
name: submucosa of left main bronchus
def: "A submucosa that is part of a left main bronchus [Obol]." [OBOL:automatic]
synonym: "left bronchus submucosa" EXACT [OBOL:automatic]
synonym: "left main bronchus submucosa" EXACT [OBOL:automatic]
synonym: "left principal bronchus submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of left bronchus" EXACT [OBOL:automatic]
synonym: "submucosa of left principal bronchus" EXACT [OBOL:automatic]
xref: FMA:13140
is_a: UBERON:0004949 ! implied link automatically realized ! submucosa of main bronchus
relationship: part_of UBERON:0002178
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002178 ! left main bronchus
[Term]
id: UBERON:0004949
name: submucosa of main bronchus
def: "A submucosa that is part of a main bronchus [Obol]." [OBOL:automatic]
synonym: "bronchus principalis submucosa" EXACT [OBOL:automatic]
synonym: "main bronchus submucosa" EXACT [OBOL:automatic]
synonym: "primary bronchus submucosa" EXACT [OBOL:automatic]
synonym: "principal bronchus submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of bronchus principalis" EXACT [OBOL:automatic]
synonym: "submucosa of primary bronchus" EXACT [OBOL:automatic]
synonym: "submucosa of principal bronchus" EXACT [OBOL:automatic]
xref: FMA:13118
is_a: UBERON:0001957 ! implied link automatically realized ! submucosa of bronchus
relationship: part_of UBERON:0002182
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0004950
name: submucosa of lobar bronchus
def: "A submucosa that is part of a lobar bronchus [Obol]." [OBOL:automatic]
synonym: "lobar bronchus submucosa" EXACT [OBOL:automatic]
synonym: "secondary bronchus submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of secondary bronchus" EXACT [OBOL:automatic]
xref: FMA:62669
is_a: UBERON:0001957 ! implied link automatically realized ! submucosa of bronchus
relationship: part_of UBERON:0002183
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0004951
name: submucosa of segmental bronchus
def: "A submucosa that is part of a segmental bronchus [Obol]." [OBOL:automatic]
synonym: "segmental bronchus submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of tertiary bronchus" EXACT [OBOL:automatic]
synonym: "tertiary bronchus submucosa" EXACT [OBOL:automatic]
xref: FMA:62670
is_a: UBERON:0001957 ! implied link automatically realized ! submucosa of bronchus
relationship: part_of UBERON:0002184
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002184 ! segmental bronchus
[Term]
id: UBERON:0004952
name: submucosa of bronchiole
def: "A submucosa that is part of a bronchiole [Obol]." [OBOL:automatic]
synonym: "bronchiole submucosa" EXACT [OBOL:automatic]
synonym: "lobular bronchiole submucosa" EXACT [OBOL:automatic]
synonym: "submucosa of lobular bronchiole" EXACT [OBOL:automatic]
xref: FMA:62775
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0004777 ! implied link automatically realized ! respiratory system submucosa
relationship: part_of UBERON:0002186
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002186 ! bronchiole
[Term]
id: UBERON:0004980
name: mucosa of ureter
def: "A mucosa that is part of a ureter [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of ureter" EXACT [OBOL:automatic]
synonym: "mucous membrane of ureter" EXACT [OBOL:automatic]
synonym: "organ mucosa of ureter" EXACT [OBOL:automatic]
synonym: "ureter mucosa" EXACT [OBOL:automatic]
synonym: "ureter mucosa of organ" EXACT [OBOL:automatic]
synonym: "ureter mucous membrane" EXACT [OBOL:automatic]
synonym: "ureter organ mucosa" EXACT [OBOL:automatic]
xref: FMA:15894
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
relationship: part_of UBERON:0000056
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000056 ! ureter
[Term]
id: UBERON:0004982
name: mucosa of epiglottis
def: "A mucosa that is part of a epiglottis [Obol]." [OBOL:automatic]
synonym: "epiglottis mucosa" EXACT [OBOL:automatic]
synonym: "epiglottis mucosa of organ" EXACT [OBOL:automatic]
synonym: "epiglottis mucous membrane" EXACT [OBOL:automatic]
synonym: "epiglottis organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of epiglottis" EXACT [OBOL:automatic]
synonym: "mucous membrane of epiglottis" EXACT [OBOL:automatic]
synonym: "organ mucosa of epiglottis" EXACT [OBOL:automatic]
xref: FMA:64015
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
relationship: part_of UBERON:0000388
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000388 ! epiglottis
[Term]
id: UBERON:0004983
name: mucosa of vagina
def: "A mucosa that is part of a vagina [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of vagina" EXACT [OBOL:automatic]
synonym: "mucous membrane of vagina" EXACT [OBOL:automatic]
synonym: "organ mucosa of vagina" EXACT [OBOL:automatic]
synonym: "vagina mucosa" EXACT [OBOL:automatic]
synonym: "vagina mucosa of organ" EXACT [OBOL:automatic]
synonym: "vagina mucous membrane" EXACT [OBOL:automatic]
synonym: "vagina organ mucosa" EXACT [OBOL:automatic]
xref: FMA:19975
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000996
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0004984
name: mucosa of seminal vesicle
def: "A mucosa that is part of a seminal vesicle [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of seminal gland" EXACT [OBOL:automatic]
synonym: "mucosa of organ of seminal vesicle" EXACT [OBOL:automatic]
synonym: "mucosa of seminal gland" EXACT [OBOL:automatic]
synonym: "mucous membrane of seminal gland" EXACT [OBOL:automatic]
synonym: "mucous membrane of seminal vesicle" EXACT [OBOL:automatic]
synonym: "organ mucosa of seminal gland" EXACT [OBOL:automatic]
synonym: "organ mucosa of seminal vesicle" EXACT [OBOL:automatic]
synonym: "seminal gland mucosa" EXACT [OBOL:automatic]
synonym: "seminal gland mucosa of organ" EXACT [OBOL:automatic]
synonym: "seminal gland mucous membrane" EXACT [OBOL:automatic]
synonym: "seminal gland organ mucosa" EXACT [OBOL:automatic]
synonym: "seminal vesicle mucosa" EXACT [OBOL:automatic]
synonym: "seminal vesicle mucosa of organ" EXACT [OBOL:automatic]
synonym: "seminal vesicle mucous membrane" EXACT [OBOL:automatic]
synonym: "seminal vesicle organ mucosa" EXACT [OBOL:automatic]
xref: FMA:19405
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000998
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000998 ! seminal vesicle
[Term]
id: UBERON:0004985
name: mucosa of ejaculatory duct
def: "A mucosa that is part of a ejaculatory duct [Obol]." [OBOL:automatic]
synonym: "ejaculatory duct mucosa" EXACT [OBOL:automatic]
synonym: "ejaculatory duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "ejaculatory duct mucous membrane" EXACT [OBOL:automatic]
synonym: "ejaculatory duct organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ejaculatory duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of ejaculatory duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of ejaculatory duct" EXACT [OBOL:automatic]
xref: FMA:19373
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000999
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000999 ! ejaculatory duct
[Term]
id: UBERON:0004986
name: mucosa of deferent duct
def: "A mucosa that is part of a vas deferens [Obol]." [OBOL:automatic]
synonym: "deferent duct mucosa" EXACT [OBOL:automatic]
synonym: "deferent duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "deferent duct mucous membrane" EXACT [OBOL:automatic]
synonym: "deferent duct organ mucosa" EXACT [OBOL:automatic]
synonym: "ductus deferens mucosa" EXACT [OBOL:automatic]
synonym: "ductus deferens mucosa of organ" EXACT [OBOL:automatic]
synonym: "ductus deferens mucous membrane" EXACT [OBOL:automatic]
synonym: "ductus deferens organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of ductus deferens" EXACT [OBOL:automatic]
synonym: "mucosa of organ of deferent duct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ductus deferens" EXACT [OBOL:automatic]
synonym: "mucosa of organ of sperm duct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of vas deferen" EXACT [OBOL:automatic]
synonym: "mucosa of organ of vas deferens" EXACT [OBOL:automatic]
synonym: "mucosa of sperm duct" EXACT [OBOL:automatic]
synonym: "mucosa of vas deferen" EXACT [OBOL:automatic]
synonym: "mucosa of vas deferens" EXACT [OBOL:automatic]
synonym: "mucous membrane of deferent duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of ductus deferens" EXACT [OBOL:automatic]
synonym: "mucous membrane of sperm duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of vas deferen" EXACT [OBOL:automatic]
synonym: "mucous membrane of vas deferens" EXACT [OBOL:automatic]
synonym: "organ mucosa of deferent duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of ductus deferens" EXACT [OBOL:automatic]
synonym: "organ mucosa of sperm duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of vas deferen" EXACT [OBOL:automatic]
synonym: "organ mucosa of vas deferens" EXACT [OBOL:automatic]
synonym: "sperm duct mucosa" EXACT [OBOL:automatic]
synonym: "sperm duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "sperm duct mucous membrane" EXACT [OBOL:automatic]
synonym: "sperm duct organ mucosa" EXACT [OBOL:automatic]
synonym: "vas deferen mucosa" EXACT [OBOL:automatic]
synonym: "vas deferen mucosa of organ" EXACT [OBOL:automatic]
synonym: "vas deferen mucous membrane" EXACT [OBOL:automatic]
synonym: "vas deferen organ mucosa" EXACT [OBOL:automatic]
synonym: "vas deferens mucosa" EXACT [OBOL:automatic]
synonym: "vas deferens mucosa of organ" EXACT [OBOL:automatic]
synonym: "vas deferens mucous membrane" EXACT [OBOL:automatic]
synonym: "vas deferens organ mucosa" EXACT [OBOL:automatic]
xref: FMA:19240
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001000
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001000 ! vas deferens
[Term]
id: UBERON:0004987
name: mucosa of laryngopharynx
def: "A mucosa that is part of a hypopharynx [Obol]." [OBOL:automatic]
synonym: "hypopharynx mucosa" EXACT [OBOL:automatic]
synonym: "hypopharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "hypopharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "hypopharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "laryngeal pharynx mucosa" EXACT [OBOL:automatic]
synonym: "laryngeal pharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "laryngeal pharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "laryngeal pharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "laryngopharynx mucosa" EXACT [OBOL:automatic]
synonym: "laryngopharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "laryngopharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "laryngopharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of hypopharynx" EXACT [OBOL:automatic]
synonym: "mucosa of laryngeal pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of hypopharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of laryngeal pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of laryngopharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of hypopharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of laryngeal pharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of laryngopharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of hypopharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of laryngeal pharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of laryngopharynx" EXACT [OBOL:automatic]
xref: FMA:55030
is_a: UBERON:0000355 ! implied link automatically realized ! pharyngeal mucosa
relationship: part_of UBERON:0001051
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001051 ! hypopharynx
[Term]
id: UBERON:0004988
name: mucosa of cystic duct
def: "A mucosa that is part of a cystic duct [Obol]." [OBOL:automatic]
synonym: "cystic duct mucosa" EXACT [OBOL:automatic]
synonym: "cystic duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "cystic duct mucous membrane" EXACT [OBOL:automatic]
synonym: "cystic duct organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of cystic duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of cystic duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of cystic duct" EXACT [OBOL:automatic]
xref: FMA:14690
is_a: UBERON:0004999 ! implied link automatically realized ! mucosa of biliary tree
relationship: part_of UBERON:0001152
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001152 ! cystic duct
[Term]
id: UBERON:0004989
name: mucosa of appendix
def: "A mucosa that is part of an appendix [Obol]." [OBOL:automatic]
synonym: "appendix mucosa" EXACT [OBOL:automatic]
synonym: "appendix mucosa of organ" EXACT [OBOL:automatic]
synonym: "appendix mucous membrane" EXACT [OBOL:automatic]
synonym: "appendix organ mucosa" EXACT [OBOL:automatic]
synonym: "caecal appendix mucosa" EXACT [OBOL:automatic]
synonym: "caecal appendix mucosa of organ" EXACT [OBOL:automatic]
synonym: "caecal appendix mucous membrane" EXACT [OBOL:automatic]
synonym: "caecal appendix organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of caecal appendix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of appendix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of caecal appendix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of vermiform appendix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of vermix" EXACT [OBOL:automatic]
synonym: "mucosa of vermiform appendix" EXACT [OBOL:automatic]
synonym: "mucosa of vermix" EXACT [OBOL:automatic]
synonym: "mucous membrane of appendix" EXACT [OBOL:automatic]
synonym: "mucous membrane of caecal appendix" EXACT [OBOL:automatic]
synonym: "mucous membrane of vermiform appendix" EXACT [OBOL:automatic]
synonym: "mucous membrane of vermix" EXACT [OBOL:automatic]
synonym: "organ mucosa of appendix" EXACT [OBOL:automatic]
synonym: "organ mucosa of caecal appendix" EXACT [OBOL:automatic]
synonym: "organ mucosa of vermiform appendix" EXACT [OBOL:automatic]
synonym: "organ mucosa of vermix" EXACT [OBOL:automatic]
synonym: "vermiform appendix mucosa" EXACT [OBOL:automatic]
synonym: "vermiform appendix mucosa of organ" EXACT [OBOL:automatic]
synonym: "vermiform appendix mucous membrane" EXACT [OBOL:automatic]
synonym: "vermiform appendix organ mucosa" EXACT [OBOL:automatic]
synonym: "vermix mucosa" EXACT [OBOL:automatic]
synonym: "vermix mucosa of organ" EXACT [OBOL:automatic]
synonym: "vermix mucous membrane" EXACT [OBOL:automatic]
synonym: "vermix organ mucosa" EXACT [OBOL:automatic]
xref: FMA:14991
is_a: UBERON:0000314 ! implied link automatically realized ! cecum mucosa
relationship: part_of UBERON:0001154
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001154 ! appendix
[Term]
id: UBERON:0004990
name: mucosa of ascending colon
def: "A mucosa that is part of an ascending colon [Obol]." [OBOL:automatic]
synonym: "ascending colon mucosa" EXACT [OBOL:automatic]
synonym: "ascending colon mucosa of organ" EXACT [OBOL:automatic]
synonym: "ascending colon mucous membrane" EXACT [OBOL:automatic]
synonym: "ascending colon organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ascending colon" EXACT [OBOL:automatic]
synonym: "mucous membrane of ascending colon" EXACT [OBOL:automatic]
synonym: "organ mucosa of ascending colon" EXACT [OBOL:automatic]
xref: FMA:15005
is_a: UBERON:0000317 ! implied link automatically realized ! colonic mucosa
relationship: part_of UBERON:0001156
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001156 ! ascending colon
[Term]
id: UBERON:0004991
name: mucosa of transverse colon
def: "A mucosa that is part of a transverse colon [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of transverse colon" EXACT [OBOL:automatic]
synonym: "mucous membrane of transverse colon" EXACT [OBOL:automatic]
synonym: "organ mucosa of transverse colon" EXACT [OBOL:automatic]
synonym: "transverse colon mucosa" EXACT [OBOL:automatic]
synonym: "transverse colon mucosa of organ" EXACT [OBOL:automatic]
synonym: "transverse colon mucous membrane" EXACT [OBOL:automatic]
synonym: "transverse colon organ mucosa" EXACT [OBOL:automatic]
xref: FMA:15012
is_a: UBERON:0000317 ! implied link automatically realized ! colonic mucosa
relationship: part_of UBERON:0001157
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001157 ! transverse colon
[Term]
id: UBERON:0004992
name: mucosa of descending colon
def: "A mucosa that is part of a descending colon [Obol]." [OBOL:automatic]
synonym: "descending colon mucosa" EXACT [OBOL:automatic]
synonym: "descending colon mucosa of organ" EXACT [OBOL:automatic]
synonym: "descending colon mucous membrane" EXACT [OBOL:automatic]
synonym: "descending colon organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of descending colon" EXACT [OBOL:automatic]
synonym: "mucous membrane of descending colon" EXACT [OBOL:automatic]
synonym: "organ mucosa of descending colon" EXACT [OBOL:automatic]
xref: FMA:15019
is_a: UBERON:0000317 ! implied link automatically realized ! colonic mucosa
relationship: part_of UBERON:0001158
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001158 ! descending colon
[Term]
id: UBERON:0004993
name: mucosa of sigmoid colon
def: "A mucosa that is part of a sigmoid colon [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of sigmoid colon" EXACT [OBOL:automatic]
synonym: "mucous membrane of sigmoid colon" EXACT [OBOL:automatic]
synonym: "organ mucosa of sigmoid colon" EXACT [OBOL:automatic]
synonym: "sigmoid colon mucosa" EXACT [OBOL:automatic]
synonym: "sigmoid colon mucosa of organ" EXACT [OBOL:automatic]
synonym: "sigmoid colon mucous membrane" EXACT [OBOL:automatic]
synonym: "sigmoid colon organ mucosa" EXACT [OBOL:automatic]
xref: FMA:15026
is_a: UBERON:0000317 ! implied link automatically realized ! colonic mucosa
relationship: part_of UBERON:0001159
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001159 ! sigmoid colon
[Term]
id: UBERON:0004994
name: mucosa of fundus of stomach
def: "A mucosa that is part of a fundus of stomach [Obol]." [OBOL:automatic]
synonym: "fundus gastricus (ventricularis) mucosa" EXACT [OBOL:automatic]
synonym: "fundus gastricus (ventricularis) mucosa of organ" EXACT [OBOL:automatic]
synonym: "fundus gastricus (ventricularis) mucous membrane" EXACT [OBOL:automatic]
synonym: "fundus gastricus (ventricularis) organ mucosa" EXACT [OBOL:automatic]
synonym: "fundus of stomach mucosa" EXACT [OBOL:automatic]
synonym: "fundus of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "fundus of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "fundus of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of fundus gastricus (ventricularis)" EXACT [OBOL:automatic]
synonym: "mucosa of organ of fundus gastricus (ventricularis)" EXACT [OBOL:automatic]
synonym: "mucosa of organ of fundus of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach fundus" EXACT [OBOL:automatic]
synonym: "mucosa of stomach fundus" EXACT [OBOL:automatic]
synonym: "mucous membrane of fundus gastricus (ventricularis)" EXACT [OBOL:automatic]
synonym: "mucous membrane of fundus of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach fundus" EXACT [OBOL:automatic]
synonym: "organ mucosa of fundus gastricus (ventricularis)" EXACT [OBOL:automatic]
synonym: "organ mucosa of fundus of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach fundus" EXACT [OBOL:automatic]
synonym: "stomach fundus mucosa" EXACT [OBOL:automatic]
synonym: "stomach fundus mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach fundus mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach fundus organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17053
is_a: UBERON:0001199 ! implied link automatically realized ! mucosa of stomach
relationship: part_of UBERON:0001160
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001160 ! fundus of stomach
[Term]
id: UBERON:0004995
name: mucosa of body of stomach
def: "A mucosa that is part of a body of stomach [Obol]." [OBOL:automatic]
synonym: "body of stomach mucosa" EXACT [OBOL:automatic]
synonym: "body of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "body of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "body of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "corpus gastricum (ventriculare) mucosa" EXACT [OBOL:automatic]
synonym: "corpus gastricum (ventriculare) mucosa of organ" EXACT [OBOL:automatic]
synonym: "corpus gastricum (ventriculare) mucous membrane" EXACT [OBOL:automatic]
synonym: "corpus gastricum (ventriculare) organ mucosa" EXACT [OBOL:automatic]
synonym: "gastric body mucosa" EXACT [OBOL:automatic]
synonym: "gastric body mucosa of organ" EXACT [OBOL:automatic]
synonym: "gastric body mucous membrane" EXACT [OBOL:automatic]
synonym: "gastric body organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of corpus gastricum (ventriculare)" EXACT [OBOL:automatic]
synonym: "mucosa of gastric body" EXACT [OBOL:automatic]
synonym: "mucosa of organ of body of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of corpus gastricum (ventriculare)" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gastric body" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach body" EXACT [OBOL:automatic]
synonym: "mucosa of stomach body" EXACT [OBOL:automatic]
synonym: "mucous membrane of body of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of corpus gastricum (ventriculare)" EXACT [OBOL:automatic]
synonym: "mucous membrane of gastric body" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach body" EXACT [OBOL:automatic]
synonym: "organ mucosa of body of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of corpus gastricum (ventriculare)" EXACT [OBOL:automatic]
synonym: "organ mucosa of gastric body" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach body" EXACT [OBOL:automatic]
synonym: "stomach body mucosa" EXACT [OBOL:automatic]
synonym: "stomach body mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach body mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach body organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17054
is_a: UBERON:0001199 ! implied link automatically realized ! mucosa of stomach
relationship: part_of UBERON:0001161
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001161 ! body of stomach
[Term]
id: UBERON:0004996
name: mucosa of cardia of stomach
def: "A mucosa that is part of a cardia of stomach [Obol]." [OBOL:automatic]
synonym: "cardia of stomach mucosa" EXACT [OBOL:automatic]
synonym: "cardia of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "cardia of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "cardia of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "cardial part of stomach mucosa" EXACT [OBOL:automatic]
synonym: "cardial part of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "cardial part of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "cardial part of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "gastric cardia mucosa" EXACT [OBOL:automatic]
synonym: "gastric cardia mucosa of organ" EXACT [OBOL:automatic]
synonym: "gastric cardia mucous membrane" EXACT [OBOL:automatic]
synonym: "gastric cardia organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of gastric cardia" EXACT [OBOL:automatic]
synonym: "mucosa of organ of cardia of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gastric cardia" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach cardiac region" EXACT [OBOL:automatic]
synonym: "mucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "mucosa of stomach cardiac region" EXACT [OBOL:automatic]
synonym: "mucous membrane of cardia of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of gastric cardia" EXACT [OBOL:automatic]
synonym: "mucous membrane of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach cardiac region" EXACT [OBOL:automatic]
synonym: "organ mucosa of cardia of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of cardial part of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of gastric cardia" EXACT [OBOL:automatic]
synonym: "organ mucosa of pars cardiaca (gaster)" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach cardiac region" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) mucosa" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) mucosa of organ" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) mucous membrane" EXACT [OBOL:automatic]
synonym: "pars cardiaca (gaster) organ mucosa" EXACT [OBOL:automatic]
synonym: "stomach cardiac region mucosa" EXACT [OBOL:automatic]
synonym: "stomach cardiac region mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach cardiac region mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach cardiac region organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17456
is_a: UBERON:0001199 ! implied link automatically realized ! mucosa of stomach
relationship: part_of UBERON:0001162
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001162 ! cardia of stomach
[Term]
id: UBERON:0004997
name: mucosa of pyloric antrum
def: "A mucosa that is part of a pyloric antrum [Obol]." [OBOL:automatic]
synonym: "antrum of stomach mucosa" EXACT [OBOL:automatic]
synonym: "antrum of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "antrum of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "antrum of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of antrum of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of antrum of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pyloric antrum" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach pyloric antrum" EXACT [OBOL:automatic]
synonym: "mucosa of stomach pyloric antrum" EXACT [OBOL:automatic]
synonym: "mucous membrane of antrum of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of pyloric antrum" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach pyloric antrum" EXACT [OBOL:automatic]
synonym: "organ mucosa of antrum of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of pyloric antrum" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach pyloric antrum" EXACT [OBOL:automatic]
synonym: "pyloric antrum mucosa" EXACT [OBOL:automatic]
synonym: "pyloric antrum mucosa of organ" EXACT [OBOL:automatic]
synonym: "pyloric antrum mucous membrane" EXACT [OBOL:automatic]
synonym: "pyloric antrum organ mucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric antrum mucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric antrum mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach pyloric antrum mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach pyloric antrum organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17055
is_a: UBERON:0004998 ! implied link automatically realized ! mucosa of pylorus
relationship: part_of UBERON:0001165
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001165 ! pyloric antrum
[Term]
id: UBERON:0004998
name: mucosa of pylorus
def: "A mucosa that is part of a pylorus [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pylorus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of stomach pyloric region" EXACT [OBOL:automatic]
synonym: "mucosa of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "mucosa of stomach pyloric region" EXACT [OBOL:automatic]
synonym: "mucous membrane of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "mucous membrane of pylorus" EXACT [OBOL:automatic]
synonym: "mucous membrane of stomach pyloric region" EXACT [OBOL:automatic]
synonym: "organ mucosa of pyloric part of stomach" EXACT [OBOL:automatic]
synonym: "organ mucosa of pylorus" EXACT [OBOL:automatic]
synonym: "organ mucosa of stomach pyloric region" EXACT [OBOL:automatic]
synonym: "pyloric part of stomach mucosa" EXACT [OBOL:automatic]
synonym: "pyloric part of stomach mucosa of organ" EXACT [OBOL:automatic]
synonym: "pyloric part of stomach mucous membrane" EXACT [OBOL:automatic]
synonym: "pyloric part of stomach organ mucosa" EXACT [OBOL:automatic]
synonym: "pylorus mucosa" EXACT [OBOL:automatic]
synonym: "pylorus mucosa of organ" EXACT [OBOL:automatic]
synonym: "pylorus mucous membrane" EXACT [OBOL:automatic]
synonym: "pylorus organ mucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric region mucosa" EXACT [OBOL:automatic]
synonym: "stomach pyloric region mucosa of organ" EXACT [OBOL:automatic]
synonym: "stomach pyloric region mucous membrane" EXACT [OBOL:automatic]
synonym: "stomach pyloric region organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17461
is_a: UBERON:0001199 ! implied link automatically realized ! mucosa of stomach
relationship: part_of UBERON:0001166
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001166 ! pylorus
[Term]
id: UBERON:0004999
name: mucosa of biliary tree
def: "A mucosa that is part of a biliary tree [Obol]." [OBOL:automatic]
synonym: "biliary tract mucosa" EXACT [OBOL:automatic]
synonym: "biliary tract mucosa of organ" EXACT [OBOL:automatic]
synonym: "biliary tract mucous membrane" EXACT [OBOL:automatic]
synonym: "biliary tract organ mucosa" EXACT [OBOL:automatic]
synonym: "biliary tree mucosa" EXACT [OBOL:automatic]
synonym: "biliary tree mucosa of organ" EXACT [OBOL:automatic]
synonym: "biliary tree mucous membrane" EXACT [OBOL:automatic]
synonym: "biliary tree organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of biliary tract" EXACT [OBOL:automatic]
synonym: "mucosa of organ of biliary tract" EXACT [OBOL:automatic]
synonym: "mucosa of organ of biliary tree" EXACT [OBOL:automatic]
synonym: "mucous membrane of biliary tract" EXACT [OBOL:automatic]
synonym: "mucous membrane of biliary tree" EXACT [OBOL:automatic]
synonym: "organ mucosa of biliary tract" EXACT [OBOL:automatic]
synonym: "organ mucosa of biliary tree" EXACT [OBOL:automatic]
xref: FMA:14695
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0004786 ! implied link automatically realized ! gastrointestinal system mucosa
relationship: part_of UBERON:0001173
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001173 ! biliary tree
[Term]
id: UBERON:0005000
name: mucosa of common bile duct
def: "A mucosa that is part of a common bile duct [Obol]." [OBOL:automatic]
synonym: "common bile duct mucosa" EXACT [OBOL:automatic]
synonym: "common bile duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "common bile duct mucous membrane" EXACT [OBOL:automatic]
synonym: "common bile duct organ mucosa" EXACT [OBOL:automatic]
synonym: "ductus choledochus (biliaris) mucosa" EXACT [OBOL:automatic]
synonym: "ductus choledochus (biliaris) mucosa of organ" EXACT [OBOL:automatic]
synonym: "ductus choledochus (biliaris) mucous membrane" EXACT [OBOL:automatic]
synonym: "ductus choledochus (biliaris) organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of ductus choledochus (biliaris)" EXACT [OBOL:automatic]
synonym: "mucosa of organ of common bile duct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ductus choledochus (biliaris)" EXACT [OBOL:automatic]
synonym: "mucous membrane of common bile duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of ductus choledochus (biliaris)" EXACT [OBOL:automatic]
synonym: "organ mucosa of common bile duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of ductus choledochus (biliaris)" EXACT [OBOL:automatic]
xref: FMA:14688
is_a: UBERON:0004999 ! implied link automatically realized ! mucosa of biliary tree
relationship: part_of UBERON:0001174
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001174 ! common bile duct
[Term]
id: UBERON:0005001
name: mucosa of common hepatic duct
def: "A mucosa that is part of a common hepatic duct [Obol]." [OBOL:automatic]
synonym: "common hepatic duct mucosa" EXACT [OBOL:automatic]
synonym: "common hepatic duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "common hepatic duct mucous membrane" EXACT [OBOL:automatic]
synonym: "common hepatic duct organ mucosa" EXACT [OBOL:automatic]
synonym: "hepatic duct mucosa" EXACT [OBOL:automatic]
synonym: "hepatic duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "hepatic duct mucous membrane" EXACT [OBOL:automatic]
synonym: "hepatic duct organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of hepatic duct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of common hepatic duct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of hepatic duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of common hepatic duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of hepatic duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of common hepatic duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of hepatic duct" EXACT [OBOL:automatic]
xref: FMA:14691
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0004786 ! implied link automatically realized ! gastrointestinal system mucosa
relationship: part_of UBERON:0001175
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001175 ! common hepatic duct
[Term]
id: UBERON:0005002
name: mucosa of right hepatic duct
def: "A mucosa that is part of a right hepatic duct [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of right hepatic duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of right hepatic duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of right hepatic duct" EXACT [OBOL:automatic]
synonym: "right hepatic duct mucosa" EXACT [OBOL:automatic]
synonym: "right hepatic duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "right hepatic duct mucous membrane" EXACT [OBOL:automatic]
synonym: "right hepatic duct organ mucosa" EXACT [OBOL:automatic]
xref: FMA:14692
is_a: UBERON:0004786 ! implied link automatically realized ! gastrointestinal system mucosa
relationship: part_of UBERON:0001176
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001176 ! right hepatic duct
[Term]
id: UBERON:0005003
name: mucosa of left hepatic duct
def: "A mucosa that is part of a left hepatic duct [Obol]." [OBOL:automatic]
synonym: "left hepatic duct mucosa" EXACT [OBOL:automatic]
synonym: "left hepatic duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "left hepatic duct mucous membrane" EXACT [OBOL:automatic]
synonym: "left hepatic duct organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of left hepatic duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of left hepatic duct" EXACT [OBOL:automatic]
synonym: "organ mucosa of left hepatic duct" EXACT [OBOL:automatic]
xref: FMA:14693
is_a: UBERON:0004786 ! implied link automatically realized ! gastrointestinal system mucosa
relationship: part_of UBERON:0001177
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001177 ! left hepatic duct
[Term]
id: UBERON:0005004
name: mucosa of right ureter
def: "A mucosa that is part of a right ureter [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of right ureter" EXACT [OBOL:automatic]
synonym: "mucous membrane of right ureter" EXACT [OBOL:automatic]
synonym: "organ mucosa of right ureter" EXACT [OBOL:automatic]
synonym: "right ureter mucosa" EXACT [OBOL:automatic]
synonym: "right ureter mucosa of organ" EXACT [OBOL:automatic]
synonym: "right ureter mucous membrane" EXACT [OBOL:automatic]
synonym: "right ureter organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17806
is_a: UBERON:0004980 ! implied link automatically realized ! mucosa of ureter
relationship: part_of UBERON:0001222
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001222 ! right ureter
[Term]
id: UBERON:0005005
name: mucosa of left ureter
def: "A mucosa that is part of a left ureter [Obol]." [OBOL:automatic]
synonym: "left ureter mucosa" EXACT [OBOL:automatic]
synonym: "left ureter mucosa of organ" EXACT [OBOL:automatic]
synonym: "left ureter mucous membrane" EXACT [OBOL:automatic]
synonym: "left ureter organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of left ureter" EXACT [OBOL:automatic]
synonym: "mucous membrane of left ureter" EXACT [OBOL:automatic]
synonym: "organ mucosa of left ureter" EXACT [OBOL:automatic]
xref: FMA:17807
is_a: UBERON:0004980 ! implied link automatically realized ! mucosa of ureter
relationship: part_of UBERON:0001223
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001223 ! left ureter
[Term]
id: UBERON:0005006
name: mucosa of renal pelvis
def: "A mucosa that is part of a renal pelvis [Obol]." [OBOL:automatic]
synonym: "kidney pelvis mucosa" EXACT [OBOL:automatic]
synonym: "kidney pelvis mucosa of organ" EXACT [OBOL:automatic]
synonym: "kidney pelvis mucous membrane" EXACT [OBOL:automatic]
synonym: "kidney pelvis organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of kidney pelvis" EXACT [OBOL:automatic]
synonym: "mucosa of organ of kidney pelvis" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "mucosa of organ of renal pelvis" EXACT [OBOL:automatic]
synonym: "mucosa of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "mucous membrane of kidney pelvis" EXACT [OBOL:automatic]
synonym: "mucous membrane of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "mucous membrane of renal pelvis" EXACT [OBOL:automatic]
synonym: "organ mucosa of kidney pelvis" EXACT [OBOL:automatic]
synonym: "organ mucosa of pelvis of ureter" EXACT [OBOL:automatic]
synonym: "organ mucosa of renal pelvis" EXACT [OBOL:automatic]
synonym: "pelvis of ureter mucosa" EXACT [OBOL:automatic]
synonym: "pelvis of ureter mucosa of organ" EXACT [OBOL:automatic]
synonym: "pelvis of ureter mucous membrane" EXACT [OBOL:automatic]
synonym: "pelvis of ureter organ mucosa" EXACT [OBOL:automatic]
synonym: "renal pelvis mucosa" EXACT [OBOL:automatic]
synonym: "renal pelvis mucosa of organ" EXACT [OBOL:automatic]
synonym: "renal pelvis mucous membrane" EXACT [OBOL:automatic]
synonym: "renal pelvis organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17931
is_a: UBERON:0004980 ! implied link automatically realized ! mucosa of ureter
relationship: part_of UBERON:0001224
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001224 ! renal pelvis
[Term]
id: UBERON:0005007
name: mucosa of major calyx
def: "A mucosa that is part of a major calyx [Obol]." [OBOL:automatic]
synonym: "major calix mucosa" EXACT [OBOL:automatic]
synonym: "major calix mucosa of organ" EXACT [OBOL:automatic]
synonym: "major calix mucous membrane" EXACT [OBOL:automatic]
synonym: "major calix organ mucosa" EXACT [OBOL:automatic]
synonym: "major calyx mucosa" EXACT [OBOL:automatic]
synonym: "major calyx mucosa of organ" EXACT [OBOL:automatic]
synonym: "major calyx mucous membrane" EXACT [OBOL:automatic]
synonym: "major calyx organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of major calix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of major calix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of major calyx" EXACT [OBOL:automatic]
synonym: "mucous membrane of major calix" EXACT [OBOL:automatic]
synonym: "mucous membrane of major calyx" EXACT [OBOL:automatic]
synonym: "organ mucosa of major calix" EXACT [OBOL:automatic]
synonym: "organ mucosa of major calyx" EXACT [OBOL:automatic]
xref: FMA:17934
is_a: UBERON:0005006 ! implied link automatically realized ! mucosa of renal pelvis
relationship: part_of UBERON:0001226
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001226 ! major calyx
[Term]
id: UBERON:0005008
name: mucosa of minor calyx
def: "A mucosa that is part of a minor calyx [Obol]." [OBOL:automatic]
synonym: "minor calix mucosa" EXACT [OBOL:automatic]
synonym: "minor calix mucosa of organ" EXACT [OBOL:automatic]
synonym: "minor calix mucous membrane" EXACT [OBOL:automatic]
synonym: "minor calix organ mucosa" EXACT [OBOL:automatic]
synonym: "minor calyx mucosa" EXACT [OBOL:automatic]
synonym: "minor calyx mucosa of organ" EXACT [OBOL:automatic]
synonym: "minor calyx mucous membrane" EXACT [OBOL:automatic]
synonym: "minor calyx organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of minor calix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of minor calix" EXACT [OBOL:automatic]
synonym: "mucosa of organ of minor calyx" EXACT [OBOL:automatic]
synonym: "mucous membrane of minor calix" EXACT [OBOL:automatic]
synonym: "mucous membrane of minor calyx" EXACT [OBOL:automatic]
synonym: "organ mucosa of minor calix" EXACT [OBOL:automatic]
synonym: "organ mucosa of minor calyx" EXACT [OBOL:automatic]
xref: FMA:17937
is_a: UBERON:0005006 ! implied link automatically realized ! mucosa of renal pelvis
relationship: part_of UBERON:0001227
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001227 ! minor calyx
[Term]
id: UBERON:0005009
name: mucosa of trigone of urinary bladder
def: "A mucosa that is part of a trigone of urinary bladder [Obol]." [OBOL:automatic]
synonym: "deep trigone mucosa" EXACT [OBOL:automatic]
synonym: "deep trigone mucosa of organ" EXACT [OBOL:automatic]
synonym: "deep trigone mucous membrane" EXACT [OBOL:automatic]
synonym: "deep trigone organ mucosa" EXACT [OBOL:automatic]
synonym: "Lieutaud ' s trigone mucosa" EXACT [OBOL:automatic]
synonym: "Lieutaud ' s trigone mucosa of organ" EXACT [OBOL:automatic]
synonym: "Lieutaud ' s trigone mucous membrane" EXACT [OBOL:automatic]
synonym: "Lieutaud ' s trigone organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of deep trigone" EXACT [OBOL:automatic]
synonym: "mucosa of Lieutaud ' s trigone" EXACT [OBOL:automatic]
synonym: "mucosa of organ of deep trigone" EXACT [OBOL:automatic]
synonym: "mucosa of organ of Lieutaud ' s trigone" EXACT [OBOL:automatic]
synonym: "mucosa of organ of trigone of bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "mucosa of organ of vesical trigone" EXACT [OBOL:automatic]
synonym: "mucosa of trigone of bladder" EXACT [OBOL:automatic]
synonym: "mucosa of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "mucosa of vesical trigone" EXACT [OBOL:automatic]
synonym: "mucous membrane of deep trigone" EXACT [OBOL:automatic]
synonym: "mucous membrane of Lieutaud ' s trigone" EXACT [OBOL:automatic]
synonym: "mucous membrane of trigone of bladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "mucous membrane of vesical trigone" EXACT [OBOL:automatic]
synonym: "organ mucosa of deep trigone" EXACT [OBOL:automatic]
synonym: "organ mucosa of Lieutaud ' s trigone" EXACT [OBOL:automatic]
synonym: "organ mucosa of trigone of bladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of trigone of urinary bladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of urinary bladder trigone" EXACT [OBOL:automatic]
synonym: "organ mucosa of vesical trigone" EXACT [OBOL:automatic]
synonym: "trigone of bladder mucosa" EXACT [OBOL:automatic]
synonym: "trigone of bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "trigone of bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "trigone of bladder organ mucosa" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder mucosa" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "trigone of urinary bladder organ mucosa" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone mucosa" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone mucosa of organ" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone mucous membrane" EXACT [OBOL:automatic]
synonym: "urinary bladder trigone organ mucosa" EXACT [OBOL:automatic]
synonym: "vesical trigone mucosa" EXACT [OBOL:automatic]
synonym: "vesical trigone mucosa of organ" EXACT [OBOL:automatic]
synonym: "vesical trigone mucous membrane" EXACT [OBOL:automatic]
synonym: "vesical trigone organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17847
is_a: UBERON:0001259 ! implied link automatically realized ! mucosa of urinary bladder
relationship: part_of UBERON:0001257
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001257 ! trigone of urinary bladder
[Term]
id: UBERON:0005010
name: mucosa of neck of urinary bladder
def: "A mucosa that is part of a neck of urinary bladder [Obol]." [OBOL:automatic]
synonym: "bladder neck mucosa" EXACT [OBOL:automatic]
synonym: "bladder neck mucosa of organ" EXACT [OBOL:automatic]
synonym: "bladder neck mucous membrane" EXACT [OBOL:automatic]
synonym: "bladder neck organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bladder neck" EXACT [OBOL:automatic]
synonym: "mucosa of neck of bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bladder neck" EXACT [OBOL:automatic]
synonym: "mucosa of organ of neck of bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "mucosa of organ of vesical neck" EXACT [OBOL:automatic]
synonym: "mucosa of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "mucosa of vesical neck" EXACT [OBOL:automatic]
synonym: "mucous membrane of bladder neck" EXACT [OBOL:automatic]
synonym: "mucous membrane of neck of bladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "mucous membrane of vesical neck" EXACT [OBOL:automatic]
synonym: "neck of bladder mucosa" EXACT [OBOL:automatic]
synonym: "neck of bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "neck of bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "neck of bladder organ mucosa" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder mucosa" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "neck of urinary bladder organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of bladder neck" EXACT [OBOL:automatic]
synonym: "organ mucosa of neck of bladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of neck of urinary bladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of urinary bladder neck" EXACT [OBOL:automatic]
synonym: "organ mucosa of vesical neck" EXACT [OBOL:automatic]
synonym: "urinary bladder neck mucosa" EXACT [OBOL:automatic]
synonym: "urinary bladder neck mucosa of organ" EXACT [OBOL:automatic]
synonym: "urinary bladder neck mucous membrane" EXACT [OBOL:automatic]
synonym: "urinary bladder neck organ mucosa" EXACT [OBOL:automatic]
synonym: "vesical neck mucosa" EXACT [OBOL:automatic]
synonym: "vesical neck mucosa of organ" EXACT [OBOL:automatic]
synonym: "vesical neck mucous membrane" EXACT [OBOL:automatic]
synonym: "vesical neck organ mucosa" EXACT [OBOL:automatic]
xref: FMA:17846
is_a: UBERON:0001259 ! implied link automatically realized ! mucosa of urinary bladder
relationship: part_of UBERON:0001258
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001258 ! neck of urinary bladder
[Term]
id: UBERON:0005011
name: mucosa of right uterine tube
def: "A mucosa that is part of a right uterine tube [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of right fallopian tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of right oviduct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of right uterine tube" EXACT [OBOL:automatic]
synonym: "mucosa of right fallopian tube" EXACT [OBOL:automatic]
synonym: "mucosa of right oviduct" EXACT [OBOL:automatic]
synonym: "mucous membrane of right fallopian tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of right oviduct" EXACT [OBOL:automatic]
synonym: "mucous membrane of right uterine tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of right fallopian tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of right oviduct" EXACT [OBOL:automatic]
synonym: "organ mucosa of right uterine tube" EXACT [OBOL:automatic]
synonym: "right fallopian tube mucosa" EXACT [OBOL:automatic]
synonym: "right fallopian tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "right fallopian tube mucous membrane" EXACT [OBOL:automatic]
synonym: "right fallopian tube organ mucosa" EXACT [OBOL:automatic]
synonym: "right oviduct mucosa" EXACT [OBOL:automatic]
synonym: "right oviduct mucosa of organ" EXACT [OBOL:automatic]
synonym: "right oviduct mucous membrane" EXACT [OBOL:automatic]
synonym: "right oviduct organ mucosa" EXACT [OBOL:automatic]
synonym: "right uterine tube mucosa" EXACT [OBOL:automatic]
synonym: "right uterine tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "right uterine tube mucous membrane" EXACT [OBOL:automatic]
synonym: "right uterine tube organ mucosa" EXACT [OBOL:automatic]
xref: FMA:18452
is_a: UBERON:0005048 ! implied link automatically realized ! mucosa of uterine tube
relationship: part_of UBERON:0001302
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001302 ! right uterine tube
[Term]
id: UBERON:0005012
name: mucosa of left uterine tube
def: "A mucosa that is part of a left uterine tube [Obol]." [OBOL:automatic]
synonym: "left fallopian tube mucosa" EXACT [OBOL:automatic]
synonym: "left fallopian tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "left fallopian tube mucous membrane" EXACT [OBOL:automatic]
synonym: "left fallopian tube organ mucosa" EXACT [OBOL:automatic]
synonym: "left oviduct mucosa" EXACT [OBOL:automatic]
synonym: "left oviduct mucosa of organ" EXACT [OBOL:automatic]
synonym: "left oviduct mucous membrane" EXACT [OBOL:automatic]
synonym: "left oviduct organ mucosa" EXACT [OBOL:automatic]
synonym: "left uterine tube mucosa" EXACT [OBOL:automatic]
synonym: "left uterine tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "left uterine tube mucous membrane" EXACT [OBOL:automatic]
synonym: "left uterine tube organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of left fallopian tube" EXACT [OBOL:automatic]
synonym: "mucosa of left oviduct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of left fallopian tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of left oviduct" EXACT [OBOL:automatic]
synonym: "mucosa of organ of left uterine tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of left fallopian tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of left oviduct" EXACT [OBOL:automatic]
synonym: "mucous membrane of left uterine tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of left fallopian tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of left oviduct" EXACT [OBOL:automatic]
synonym: "organ mucosa of left uterine tube" EXACT [OBOL:automatic]
xref: FMA:18453
is_a: UBERON:0005048 ! implied link automatically realized ! mucosa of uterine tube
relationship: part_of UBERON:0001303
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001303 ! left uterine tube
[Term]
id: UBERON:0005013
name: mucosa of male urethra
def: "A mucosa that is part of a male urethra [Obol]." [OBOL:automatic]
synonym: "male urethra mucosa" EXACT [OBOL:automatic]
synonym: "male urethra mucosa of organ" EXACT [OBOL:automatic]
synonym: "male urethra mucous membrane" EXACT [OBOL:automatic]
synonym: "male urethra organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of male urethra" EXACT [OBOL:automatic]
synonym: "mucous membrane of male urethra" EXACT [OBOL:automatic]
synonym: "organ mucosa of male urethra" EXACT [OBOL:automatic]
xref: FMA:239937
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
relationship: part_of UBERON:0001333
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001333 ! male urethra
[Term]
id: UBERON:0005014
name: mucosa of female urethra
def: "A mucosa that is part of a female urethra [Obol]." [OBOL:automatic]
synonym: "female urethra mucosa" EXACT [OBOL:automatic]
synonym: "female urethra mucosa of organ" EXACT [OBOL:automatic]
synonym: "female urethra mucous membrane" EXACT [OBOL:automatic]
synonym: "female urethra organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of female urethra" EXACT [OBOL:automatic]
synonym: "mucous membrane of female urethra" EXACT [OBOL:automatic]
synonym: "organ mucosa of female urethra" EXACT [OBOL:automatic]
xref: FMA:239940
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
relationship: part_of UBERON:0001334
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001334 ! female urethra
[Term]
id: UBERON:0005015
name: mucosa of prostatic urethra
def: "A mucosa that is part of a prostatic urethra [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of prostatic part of urethra" EXACT [OBOL:automatic]
synonym: "mucosa of organ of prostatic urethra" EXACT [OBOL:automatic]
synonym: "mucosa of prostatic part of urethra" EXACT [OBOL:automatic]
synonym: "mucous membrane of prostatic part of urethra" EXACT [OBOL:automatic]
synonym: "mucous membrane of prostatic urethra" EXACT [OBOL:automatic]
synonym: "organ mucosa of prostatic part of urethra" EXACT [OBOL:automatic]
synonym: "organ mucosa of prostatic urethra" EXACT [OBOL:automatic]
synonym: "prostatic part of urethra mucosa" EXACT [OBOL:automatic]
synonym: "prostatic part of urethra mucosa of organ" EXACT [OBOL:automatic]
synonym: "prostatic part of urethra mucous membrane" EXACT [OBOL:automatic]
synonym: "prostatic part of urethra organ mucosa" EXACT [OBOL:automatic]
synonym: "prostatic urethra mucosa" EXACT [OBOL:automatic]
synonym: "prostatic urethra mucosa of organ" EXACT [OBOL:automatic]
synonym: "prostatic urethra mucous membrane" EXACT [OBOL:automatic]
synonym: "prostatic urethra organ mucosa" EXACT [OBOL:automatic]
xref: FMA:77079
is_a: UBERON:0005013 ! implied link automatically realized ! mucosa of male urethra
relationship: part_of UBERON:0001335
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001335 ! prostatic urethra
[Term]
id: UBERON:0005016
name: mucosa of intermediate urethra
def: "A mucosa that is part of a membranous urethra [Obol]." [OBOL:automatic]
synonym: "intermediate part of urethra mucosa" EXACT [OBOL:automatic]
synonym: "intermediate part of urethra mucosa of organ" EXACT [OBOL:automatic]
synonym: "intermediate part of urethra mucous membrane" EXACT [OBOL:automatic]
synonym: "intermediate part of urethra organ mucosa" EXACT [OBOL:automatic]
synonym: "intermediate urethra mucosa" EXACT [OBOL:automatic]
synonym: "intermediate urethra mucosa of organ" EXACT [OBOL:automatic]
synonym: "intermediate urethra mucous membrane" EXACT [OBOL:automatic]
synonym: "intermediate urethra organ mucosa" EXACT [OBOL:automatic]
synonym: "membranous part of urethra mucosa" EXACT [OBOL:automatic]
synonym: "membranous part of urethra mucosa of organ" EXACT [OBOL:automatic]
synonym: "membranous part of urethra mucous membrane" EXACT [OBOL:automatic]
synonym: "membranous part of urethra organ mucosa" EXACT [OBOL:automatic]
synonym: "membranous urethra mucosa" EXACT [OBOL:automatic]
synonym: "membranous urethra mucosa of organ" EXACT [OBOL:automatic]
synonym: "membranous urethra mucous membrane" EXACT [OBOL:automatic]
synonym: "membranous urethra organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of intermediate part of urethra" EXACT [OBOL:automatic]
synonym: "mucosa of membranous part of urethra" EXACT [OBOL:automatic]
synonym: "mucosa of membranous urethra" EXACT [OBOL:automatic]
synonym: "mucosa of organ of intermediate part of urethra" EXACT [OBOL:automatic]
synonym: "mucosa of organ of intermediate urethra" EXACT [OBOL:automatic]
synonym: "mucosa of organ of membranous part of urethra" EXACT [OBOL:automatic]
synonym: "mucosa of organ of membranous urethra" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pars membranacea (urethrae)" EXACT [OBOL:automatic]
synonym: "mucosa of pars membranacea (urethrae)" EXACT [OBOL:automatic]
synonym: "mucous membrane of intermediate part of urethra" EXACT [OBOL:automatic]
synonym: "mucous membrane of intermediate urethra" EXACT [OBOL:automatic]
synonym: "mucous membrane of membranous part of urethra" EXACT [OBOL:automatic]
synonym: "mucous membrane of membranous urethra" EXACT [OBOL:automatic]
synonym: "mucous membrane of pars membranacea (urethrae)" EXACT [OBOL:automatic]
synonym: "organ mucosa of intermediate part of urethra" EXACT [OBOL:automatic]
synonym: "organ mucosa of intermediate urethra" EXACT [OBOL:automatic]
synonym: "organ mucosa of membranous part of urethra" EXACT [OBOL:automatic]
synonym: "organ mucosa of membranous urethra" EXACT [OBOL:automatic]
synonym: "organ mucosa of pars membranacea (urethrae)" EXACT [OBOL:automatic]
synonym: "pars membranacea (urethrae) mucosa" EXACT [OBOL:automatic]
synonym: "pars membranacea (urethrae) mucosa of organ" EXACT [OBOL:automatic]
synonym: "pars membranacea (urethrae) mucous membrane" EXACT [OBOL:automatic]
synonym: "pars membranacea (urethrae) organ mucosa" EXACT [OBOL:automatic]
xref: FMA:77085
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
relationship: part_of UBERON:0001336
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001336 ! membranous urethra
[Term]
id: UBERON:0005017
name: mucosa of lacrimal sac
def: "A mucosa that is part of a lacrimal sac [Obol]." [OBOL:automatic]
synonym: "lacrimal sac mucosa" EXACT [OBOL:automatic]
synonym: "lacrimal sac mucosa of organ" EXACT [OBOL:automatic]
synonym: "lacrimal sac mucous membrane" EXACT [OBOL:automatic]
synonym: "lacrimal sac organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of lacrimal sac" EXACT [OBOL:automatic]
synonym: "mucous membrane of lacrimal sac" EXACT [OBOL:automatic]
synonym: "organ mucosa of lacrimal sac" EXACT [OBOL:automatic]
xref: FMA:72061
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
relationship: part_of UBERON:0001351
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001351 ! lacrimal sac
[Term]
id: UBERON:0005018
name: mucosa of nasal septum
def: "A mucosa that is part of a nasal septum [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of nasal septum" EXACT [OBOL:automatic]
synonym: "mucous membrane of nasal septum" EXACT [OBOL:automatic]
synonym: "nasal septum mucosa" EXACT [OBOL:automatic]
synonym: "nasal septum mucosa of organ" EXACT [OBOL:automatic]
synonym: "nasal septum mucous membrane" EXACT [OBOL:automatic]
synonym: "nasal septum organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of nasal septum" EXACT [OBOL:automatic]
xref: FMA:60113
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
relationship: part_of UBERON:0001706
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001706 ! nasal septum
[Term]
id: UBERON:0005019
name: mucosa of palate
def: "A mucosa that is part of a palate [Obol]." [OBOL:automatic]
synonym: "mucosa of oral roof" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oral roof" EXACT [OBOL:automatic]
synonym: "mucosa of organ of palate" EXACT [OBOL:automatic]
synonym: "mucosa of organ of roof of mouth" EXACT [OBOL:automatic]
synonym: "mucosa of roof of mouth" EXACT [OBOL:automatic]
synonym: "mucous membrane of oral roof" EXACT [OBOL:automatic]
synonym: "mucous membrane of palate" EXACT [OBOL:automatic]
synonym: "mucous membrane of roof of mouth" EXACT [OBOL:automatic]
synonym: "oral roof mucosa" EXACT [OBOL:automatic]
synonym: "oral roof mucosa of organ" EXACT [OBOL:automatic]
synonym: "oral roof mucous membrane" EXACT [OBOL:automatic]
synonym: "oral roof organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of oral roof" EXACT [OBOL:automatic]
synonym: "organ mucosa of palate" EXACT [OBOL:automatic]
synonym: "organ mucosa of roof of mouth" EXACT [OBOL:automatic]
synonym: "palate mucosa" EXACT [OBOL:automatic]
synonym: "palate mucosa of organ" EXACT [OBOL:automatic]
synonym: "palate mucous membrane" EXACT [OBOL:automatic]
synonym: "palate organ mucosa" EXACT [OBOL:automatic]
synonym: "roof of mouth mucosa" EXACT [OBOL:automatic]
synonym: "roof of mouth mucosa of organ" EXACT [OBOL:automatic]
synonym: "roof of mouth mucous membrane" EXACT [OBOL:automatic]
synonym: "roof of mouth organ mucosa" EXACT [OBOL:automatic]
xref: FMA:59765
is_a: UBERON:0001826 ! implied link automatically realized ! nasal cavity mucosa
is_a: UBERON:0003729 ! implied link automatically realized ! mouth mucosa
relationship: part_of UBERON:0001716
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001716 ! palate
[Term]
id: UBERON:0005020
name: mucosa of tongue
def: "A mucosa that is part of a tongue [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of tongue" EXACT [OBOL:automatic]
synonym: "mucous membrane of tongue" EXACT [OBOL:automatic]
synonym: "organ mucosa of tongue" EXACT [OBOL:automatic]
synonym: "tongue mucosa" EXACT [OBOL:automatic]
synonym: "tongue mucosa of organ" EXACT [OBOL:automatic]
synonym: "tongue mucous membrane" EXACT [OBOL:automatic]
synonym: "tongue organ mucosa" EXACT [OBOL:automatic]
xref: FMA:54807
is_a: UBERON:0003729 ! implied link automatically realized ! mouth mucosa
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001723
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0005021
name: mucosa of sphenoidal sinus
def: "A mucosa that is part of a sphenoidal sinus [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of sphenoid sinus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of sphenoidal sinus" EXACT [OBOL:automatic]
synonym: "mucosa of sphenoid sinus" EXACT [OBOL:automatic]
synonym: "mucous membrane of sphenoid sinus" EXACT [OBOL:automatic]
synonym: "mucous membrane of sphenoidal sinus" EXACT [OBOL:automatic]
synonym: "organ mucosa of sphenoid sinus" EXACT [OBOL:automatic]
synonym: "organ mucosa of sphenoidal sinus" EXACT [OBOL:automatic]
synonym: "sphenoid sinus mucosa" EXACT [OBOL:automatic]
synonym: "sphenoid sinus mucosa of organ" EXACT [OBOL:automatic]
synonym: "sphenoid sinus mucous membrane" EXACT [OBOL:automatic]
synonym: "sphenoid sinus organ mucosa" EXACT [OBOL:automatic]
synonym: "sphenoidal sinus mucosa" EXACT [OBOL:automatic]
synonym: "sphenoidal sinus mucosa of organ" EXACT [OBOL:automatic]
synonym: "sphenoidal sinus mucous membrane" EXACT [OBOL:automatic]
synonym: "sphenoidal sinus organ mucosa" EXACT [OBOL:automatic]
xref: FMA:59775
is_a: UBERON:0005030 ! implied link automatically realized ! mucosa of paranasal sinus
relationship: part_of UBERON:0001724
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001724 ! sphenoidal sinus
[Term]
id: UBERON:0005022
name: mucosa of nasopharynx
def: "A mucosa that is part of a nasopharynx [Obol]." [OBOL:automatic]
synonym: "mucosa of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of nasopharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of rhinopharynx" EXACT [OBOL:automatic]
synonym: "mucosa of rhinopharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of nasopharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of rhinopharynx" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx mucosa" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "nasal part of pharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "nasopharynx mucosa" EXACT [OBOL:automatic]
synonym: "nasopharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "nasopharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "nasopharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of nasal part of pharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of nasopharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of rhinopharynx" EXACT [OBOL:automatic]
synonym: "rhinopharynx mucosa" EXACT [OBOL:automatic]
synonym: "rhinopharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "rhinopharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "rhinopharynx organ mucosa" EXACT [OBOL:automatic]
xref: FMA:54971
is_a: UBERON:0000355 ! implied link automatically realized ! pharyngeal mucosa
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001728
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001728 ! nasopharynx
[Term]
id: UBERON:0005023
name: mucosa of oropharynx
def: "A mucosa that is part of a oropharynx [Obol]." [OBOL:automatic]
synonym: "mucosa of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "mucosa of organ of oropharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "mucous membrane of oropharynx" EXACT [OBOL:automatic]
synonym: "oral part of pharynx mucosa" EXACT [OBOL:automatic]
synonym: "oral part of pharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "oral part of pharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "oral part of pharynx organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of oral part of pharynx" EXACT [OBOL:automatic]
synonym: "organ mucosa of oropharynx" EXACT [OBOL:automatic]
synonym: "oropharynx mucosa" EXACT [OBOL:automatic]
synonym: "oropharynx mucosa of organ" EXACT [OBOL:automatic]
synonym: "oropharynx mucous membrane" EXACT [OBOL:automatic]
synonym: "oropharynx organ mucosa" EXACT [OBOL:automatic]
xref: FMA:54933
is_a: UBERON:0000355 ! implied link automatically realized ! pharyngeal mucosa
is_a: UBERON:0004786 ! implied link automatically realized ! gastrointestinal system mucosa
relationship: part_of UBERON:0001729
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001729 ! oropharynx
[Term]
id: UBERON:0005024
name: mucosa of soft palate
def: "A mucosa that is part of a soft palate [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of soft palate" EXACT [OBOL:automatic]
synonym: "mucous membrane of soft palate" EXACT [OBOL:automatic]
synonym: "organ mucosa of soft palate" EXACT [OBOL:automatic]
synonym: "soft palate mucosa" EXACT [OBOL:automatic]
synonym: "soft palate mucosa of organ" EXACT [OBOL:automatic]
synonym: "soft palate mucous membrane" EXACT [OBOL:automatic]
synonym: "soft palate organ mucosa" EXACT [OBOL:automatic]
xref: FMA:59784
is_a: UBERON:0005019 ! implied link automatically realized ! mucosa of palate
relationship: part_of UBERON:0001733
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001733 ! soft palate
[Term]
id: UBERON:0005025
name: mucosa of uvula
def: "A mucosa that is part of a uvula [Obol]." [OBOL:automatic]
synonym: "cerebellum lobule IX mucosa" EXACT [OBOL:automatic]
synonym: "cerebellum lobule IX mucosa of organ" EXACT [OBOL:automatic]
synonym: "cerebellum lobule IX mucous membrane" EXACT [OBOL:automatic]
synonym: "cerebellum lobule IX organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of cerebellum lobule IX" EXACT [OBOL:automatic]
synonym: "mucosa of organ of cerebellum lobule IX" EXACT [OBOL:automatic]
synonym: "mucosa of organ of uvula" EXACT [OBOL:automatic]
synonym: "mucosa of organ of uvula of palate" EXACT [OBOL:automatic]
synonym: "mucosa of uvula of palate" EXACT [OBOL:automatic]
synonym: "mucous membrane of cerebellum lobule IX" EXACT [OBOL:automatic]
synonym: "mucous membrane of uvula" EXACT [OBOL:automatic]
synonym: "mucous membrane of uvula of palate" EXACT [OBOL:automatic]
synonym: "organ mucosa of cerebellum lobule IX" EXACT [OBOL:automatic]
synonym: "organ mucosa of uvula" EXACT [OBOL:automatic]
synonym: "organ mucosa of uvula of palate" EXACT [OBOL:automatic]
synonym: "uvula mucosa" EXACT [OBOL:automatic]
synonym: "uvula mucosa of organ" EXACT [OBOL:automatic]
synonym: "uvula mucous membrane" EXACT [OBOL:automatic]
synonym: "uvula of palate mucosa" EXACT [OBOL:automatic]
synonym: "uvula of palate mucosa of organ" EXACT [OBOL:automatic]
synonym: "uvula of palate mucous membrane" EXACT [OBOL:automatic]
synonym: "uvula of palate organ mucosa" EXACT [OBOL:automatic]
synonym: "uvula organ mucosa" EXACT [OBOL:automatic]
xref: FMA:60030
is_a: UBERON:0005024 ! implied link automatically realized ! mucosa of soft palate
relationship: part_of UBERON:0001734
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001734 ! uvula
[Term]
id: UBERON:0005026
name: mucosa of middle ear
def: "A mucosa that is part of a middle ear [Obol]." [OBOL:automatic]
synonym: "middle ear mucosa" EXACT [OBOL:automatic]
synonym: "middle ear mucosa of organ" EXACT [OBOL:automatic]
synonym: "middle ear mucous membrane" EXACT [OBOL:automatic]
synonym: "middle ear organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of middle ear" EXACT [OBOL:automatic]
synonym: "mucous membrane of middle ear" EXACT [OBOL:automatic]
synonym: "organ mucosa of middle ear" EXACT [OBOL:automatic]
xref: FMA:59663
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
relationship: part_of UBERON:0001756
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001756 ! middle ear
[Term]
id: UBERON:0005027
name: mucosa of frontal sinus
def: "A mucosa that is part of a frontal sinus [Obol]." [OBOL:automatic]
synonym: "frontal sinus mucosa" EXACT [OBOL:automatic]
synonym: "frontal sinus mucosa of organ" EXACT [OBOL:automatic]
synonym: "frontal sinus mucous membrane" EXACT [OBOL:automatic]
synonym: "frontal sinus organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of frontal sinus" EXACT [OBOL:automatic]
synonym: "mucous membrane of frontal sinus" EXACT [OBOL:automatic]
synonym: "organ mucosa of frontal sinus" EXACT [OBOL:automatic]
xref: FMA:59774
is_a: UBERON:0005030 ! implied link automatically realized ! mucosa of paranasal sinus
relationship: part_of UBERON:0001760
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001760 ! frontal sinus
[Term]
id: UBERON:0005028
name: mucosa of maxillary sinus
def: "A mucosa that is part of a maxillary sinus [Obol]." [OBOL:automatic]
synonym: "antrum of highmore mucosa" EXACT [OBOL:automatic]
synonym: "antrum of highmore mucosa of organ" EXACT [OBOL:automatic]
synonym: "antrum of highmore mucous membrane" EXACT [OBOL:automatic]
synonym: "antrum of highmore organ mucosa" EXACT [OBOL:automatic]
synonym: "maxillary sinus mucosa" EXACT [OBOL:automatic]
synonym: "maxillary sinus mucosa of organ" EXACT [OBOL:automatic]
synonym: "maxillary sinus mucous membrane" EXACT [OBOL:automatic]
synonym: "maxillary sinus organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of antrum of highmore" EXACT [OBOL:automatic]
synonym: "mucosa of organ of antrum of highmore" EXACT [OBOL:automatic]
synonym: "mucosa of organ of maxillary sinus" EXACT [OBOL:automatic]
synonym: "mucous membrane of antrum of highmore" EXACT [OBOL:automatic]
synonym: "mucous membrane of maxillary sinus" EXACT [OBOL:automatic]
synonym: "organ mucosa of antrum of highmore" EXACT [OBOL:automatic]
synonym: "organ mucosa of maxillary sinus" EXACT [OBOL:automatic]
xref: FMA:59773
is_a: UBERON:0005030 ! implied link automatically realized ! mucosa of paranasal sinus
relationship: part_of UBERON:0001764
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001764 ! maxillary sinus
[Term]
id: UBERON:0005029
name: mucosa of lacrimal canaliculus
def: "A mucosa that is part of a lacrimal canaliculus [Obol]." [OBOL:automatic]
synonym: "lacrimal canaliculus mucosa" EXACT [OBOL:automatic]
synonym: "lacrimal canaliculus mucosa of organ" EXACT [OBOL:automatic]
synonym: "lacrimal canaliculus mucous membrane" EXACT [OBOL:automatic]
synonym: "lacrimal canaliculus organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of lacrimal canaliculus" EXACT [OBOL:automatic]
synonym: "mucous membrane of lacrimal canaliculus" EXACT [OBOL:automatic]
synonym: "organ mucosa of lacrimal canaliculus" EXACT [OBOL:automatic]
xref: FMA:85366
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
relationship: part_of UBERON:0001770
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001770 ! lacrimal canaliculus
[Term]
id: UBERON:0005030
name: mucosa of paranasal sinus
def: "A mucosa that is part of a paranasal sinus [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of paranasal sinus" EXACT [OBOL:automatic]
synonym: "mucous membrane of paranasal sinus" EXACT [OBOL:automatic]
synonym: "organ mucosa of paranasal sinus" EXACT [OBOL:automatic]
synonym: "paranasal sinus mucosa" EXACT [OBOL:automatic]
synonym: "paranasal sinus mucosa of organ" EXACT [OBOL:automatic]
synonym: "paranasal sinus mucous membrane" EXACT [OBOL:automatic]
synonym: "paranasal sinus organ mucosa" EXACT [OBOL:automatic]
xref: FMA:59772
is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa
relationship: part_of UBERON:0001825
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001825 ! paranasal sinus
[Term]
id: UBERON:0005031
name: mucosa of upper lip
def: "A mucosa that is part of a upper lip [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of upper lip" EXACT [OBOL:automatic]
synonym: "mucous membrane of upper lip" EXACT [OBOL:automatic]
synonym: "organ mucosa of upper lip" EXACT [OBOL:automatic]
synonym: "upper lip mucosa" EXACT [OBOL:automatic]
synonym: "upper lip mucosa of organ" EXACT [OBOL:automatic]
synonym: "upper lip mucous membrane" EXACT [OBOL:automatic]
synonym: "upper lip organ mucosa" EXACT [OBOL:automatic]
xref: FMA:59832
is_a: UBERON:0003729 ! implied link automatically realized ! mouth mucosa
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001834
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001834 ! upper lip
[Term]
id: UBERON:0005032
name: mucosa of lower lip
def: "A mucosa that is part of a lower lip [Obol]." [OBOL:automatic]
synonym: "lower lip mucosa" EXACT [OBOL:automatic]
synonym: "lower lip mucosa of organ" EXACT [OBOL:automatic]
synonym: "lower lip mucous membrane" EXACT [OBOL:automatic]
synonym: "lower lip organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of lower lip" EXACT [OBOL:automatic]
synonym: "mucous membrane of lower lip" EXACT [OBOL:automatic]
synonym: "organ mucosa of lower lip" EXACT [OBOL:automatic]
xref: FMA:59833
is_a: UBERON:0003729 ! implied link automatically realized ! mouth mucosa
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001835
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001835 ! lower lip
[Term]
id: UBERON:0005033
name: mucosa of gallbladder
def: "A mucosa that is part of a gallbladder [Obol]." [OBOL:automatic]
synonym: "gall bladder mucosa" EXACT [OBOL:automatic]
synonym: "gall bladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "gall bladder mucous membrane" EXACT [OBOL:automatic]
synonym: "gall bladder organ mucosa" EXACT [OBOL:automatic]
synonym: "gallbladder mucosa" EXACT [OBOL:automatic]
synonym: "gallbladder mucosa of organ" EXACT [OBOL:automatic]
synonym: "gallbladder mucous membrane" EXACT [OBOL:automatic]
synonym: "gallbladder organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of gall bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gall bladder" EXACT [OBOL:automatic]
synonym: "mucosa of organ of gallbladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of gall bladder" EXACT [OBOL:automatic]
synonym: "mucous membrane of gallbladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of gall bladder" EXACT [OBOL:automatic]
synonym: "organ mucosa of gallbladder" EXACT [OBOL:automatic]
xref: FMA:14662
is_a: UBERON:0004786 ! implied link automatically realized ! gastrointestinal system mucosa
relationship: part_of UBERON:0002110
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002110 ! gallbladder
[Term]
id: UBERON:0005034
name: mucosa of right main bronchus
def: "A mucosa that is part of a right main bronchus [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of right bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of right main bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of right principal bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of right bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of right principal bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of right bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of right main bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of right principal bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of right bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of right main bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of right principal bronchus" EXACT [OBOL:automatic]
synonym: "right bronchus mucosa" EXACT [OBOL:automatic]
synonym: "right bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "right bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "right bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "right main bronchus mucosa" EXACT [OBOL:automatic]
synonym: "right main bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "right main bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "right main bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "right principal bronchus mucosa" EXACT [OBOL:automatic]
synonym: "right principal bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "right principal bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "right principal bronchus organ mucosa" EXACT [OBOL:automatic]
xref: FMA:13137
is_a: UBERON:0005036 ! implied link automatically realized ! mucosa of main bronchus
relationship: part_of UBERON:0002177
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002177 ! right main bronchus
[Term]
id: UBERON:0005035
name: mucosa of left main bronchus
def: "A mucosa that is part of a left main bronchus [Obol]." [OBOL:automatic]
synonym: "left bronchus mucosa" EXACT [OBOL:automatic]
synonym: "left bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "left bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "left bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "left main bronchus mucosa" EXACT [OBOL:automatic]
synonym: "left main bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "left main bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "left main bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "left principal bronchus mucosa" EXACT [OBOL:automatic]
synonym: "left principal bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "left principal bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "left principal bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of left bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of left principal bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of left bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of left main bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of left principal bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of left bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of left main bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of left principal bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of left bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of left main bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of left principal bronchus" EXACT [OBOL:automatic]
xref: FMA:13138
is_a: UBERON:0005036 ! implied link automatically realized ! mucosa of main bronchus
relationship: part_of UBERON:0002178
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002178 ! left main bronchus
[Term]
id: UBERON:0005036
name: mucosa of main bronchus
def: "A mucosa that is part of a main bronchus [Obol]." [OBOL:automatic]
synonym: "bronchus principalis mucosa" EXACT [OBOL:automatic]
synonym: "bronchus principalis mucosa of organ" EXACT [OBOL:automatic]
synonym: "bronchus principalis mucous membrane" EXACT [OBOL:automatic]
synonym: "bronchus principalis organ mucosa" EXACT [OBOL:automatic]
synonym: "main bronchus mucosa" EXACT [OBOL:automatic]
synonym: "main bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "main bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "main bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bronchus principalis" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bronchus principalis" EXACT [OBOL:automatic]
synonym: "mucosa of organ of main bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of primary bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of principal bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of primary bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of principal bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchus principalis" EXACT [OBOL:automatic]
synonym: "mucous membrane of main bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of primary bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of principal bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchus principalis" EXACT [OBOL:automatic]
synonym: "organ mucosa of main bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of primary bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of principal bronchus" EXACT [OBOL:automatic]
synonym: "primary bronchus mucosa" EXACT [OBOL:automatic]
synonym: "primary bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "primary bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "primary bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "principal bronchus mucosa" EXACT [OBOL:automatic]
synonym: "principal bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "principal bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "principal bronchus organ mucosa" EXACT [OBOL:automatic]
xref: FMA:13115
is_a: UBERON:0000410 ! implied link automatically realized ! bronchial mucosa
relationship: part_of UBERON:0002182
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0005037
name: mucosa of lobar bronchus
def: "A mucosa that is part of a lobar bronchus [Obol]." [OBOL:automatic]
synonym: "lobar bronchus mucosa" EXACT [OBOL:automatic]
synonym: "lobar bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "lobar bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "lobar bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of lobar bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of secondary bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of secondary bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of lobar bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of secondary bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of lobar bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of secondary bronchus" EXACT [OBOL:automatic]
synonym: "secondary bronchus mucosa" EXACT [OBOL:automatic]
synonym: "secondary bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "secondary bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "secondary bronchus organ mucosa" EXACT [OBOL:automatic]
xref: FMA:62668
is_a: UBERON:0000410 ! implied link automatically realized ! bronchial mucosa
relationship: part_of UBERON:0002183
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0005038
name: mucosa of segmental bronchus
def: "A mucosa that is part of a segmental bronchus [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of segmental bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of tertiary bronchus" EXACT [OBOL:automatic]
synonym: "mucosa of tertiary bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of segmental bronchus" EXACT [OBOL:automatic]
synonym: "mucous membrane of tertiary bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of segmental bronchus" EXACT [OBOL:automatic]
synonym: "organ mucosa of tertiary bronchus" EXACT [OBOL:automatic]
synonym: "segmental bronchus mucosa" EXACT [OBOL:automatic]
synonym: "segmental bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "segmental bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "segmental bronchus organ mucosa" EXACT [OBOL:automatic]
synonym: "tertiary bronchus mucosa" EXACT [OBOL:automatic]
synonym: "tertiary bronchus mucosa of organ" EXACT [OBOL:automatic]
synonym: "tertiary bronchus mucous membrane" EXACT [OBOL:automatic]
synonym: "tertiary bronchus organ mucosa" EXACT [OBOL:automatic]
xref: FMA:62666
is_a: UBERON:0000410 ! implied link automatically realized ! bronchial mucosa
relationship: part_of UBERON:0002184
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002184 ! segmental bronchus
[Term]
id: UBERON:0005039
name: mucosa of bronchiole
def: "A mucosa that is part of a bronchiole [Obol]." [OBOL:automatic]
synonym: "bronchiole mucosa" EXACT [OBOL:automatic]
synonym: "bronchiole mucosa of organ" EXACT [OBOL:automatic]
synonym: "bronchiole mucous membrane" EXACT [OBOL:automatic]
synonym: "bronchiole organ mucosa" EXACT [OBOL:automatic]
synonym: "lobular bronchiole mucosa" EXACT [OBOL:automatic]
synonym: "lobular bronchiole mucosa of organ" EXACT [OBOL:automatic]
synonym: "lobular bronchiole mucous membrane" EXACT [OBOL:automatic]
synonym: "lobular bronchiole organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of lobular bronchiole" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bronchiole" EXACT [OBOL:automatic]
synonym: "mucosa of organ of lobular bronchiole" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchiole" EXACT [OBOL:automatic]
synonym: "mucous membrane of lobular bronchiole" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchiole" EXACT [OBOL:automatic]
synonym: "organ mucosa of lobular bronchiole" EXACT [OBOL:automatic]
xref: FMA:263230
xref: FMA:62774
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0004785 ! implied link automatically realized ! respiratory system mucosa
relationship: part_of UBERON:0002186
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002186 ! bronchiole
[Term]
id: UBERON:0005040
name: mucosa of terminal bronchiole
def: "A mucosa that is part of a terminal bronchiole [Obol]." [OBOL:automatic]
synonym: "bronchiolus terminalis mucosa" EXACT [OBOL:automatic]
synonym: "bronchiolus terminalis mucosa of organ" EXACT [OBOL:automatic]
synonym: "bronchiolus terminalis mucous membrane" EXACT [OBOL:automatic]
synonym: "bronchiolus terminalis organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bronchiolus terminalis" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bronchiolus terminalis" EXACT [OBOL:automatic]
synonym: "mucosa of organ of terminal bronchiole" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchiolus terminalis" EXACT [OBOL:automatic]
synonym: "mucous membrane of terminal bronchiole" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchiolus terminalis" EXACT [OBOL:automatic]
synonym: "organ mucosa of terminal bronchiole" EXACT [OBOL:automatic]
synonym: "terminal bronchiole mucosa" EXACT [OBOL:automatic]
synonym: "terminal bronchiole mucosa of organ" EXACT [OBOL:automatic]
synonym: "terminal bronchiole mucous membrane" EXACT [OBOL:automatic]
synonym: "terminal bronchiole organ mucosa" EXACT [OBOL:automatic]
xref: FMA:263232
is_a: UBERON:0005039 ! implied link automatically realized ! mucosa of bronchiole
relationship: part_of UBERON:0002187
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002187 ! terminal bronchiole
[Term]
id: UBERON:0005041
name: mucosa of respiratory bronchiole
def: "A mucosa that is part of a respiratory bronchiole [Obol]." [OBOL:automatic]
synonym: "bronchiolus respiratorius mucosa" EXACT [OBOL:automatic]
synonym: "bronchiolus respiratorius mucosa of organ" EXACT [OBOL:automatic]
synonym: "bronchiolus respiratorius mucous membrane" EXACT [OBOL:automatic]
synonym: "bronchiolus respiratorius organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of bronchiolus respiratorius" EXACT [OBOL:automatic]
synonym: "mucosa of organ of bronchiolus respiratorius" EXACT [OBOL:automatic]
synonym: "mucosa of organ of respiratory bronchiole" EXACT [OBOL:automatic]
synonym: "mucous membrane of bronchiolus respiratorius" EXACT [OBOL:automatic]
synonym: "mucous membrane of respiratory bronchiole" EXACT [OBOL:automatic]
synonym: "organ mucosa of bronchiolus respiratorius" EXACT [OBOL:automatic]
synonym: "organ mucosa of respiratory bronchiole" EXACT [OBOL:automatic]
synonym: "respiratory bronchiole mucosa" EXACT [OBOL:automatic]
synonym: "respiratory bronchiole mucosa of organ" EXACT [OBOL:automatic]
synonym: "respiratory bronchiole mucous membrane" EXACT [OBOL:automatic]
synonym: "respiratory bronchiole organ mucosa" EXACT [OBOL:automatic]
xref: FMA:263238
is_a: UBERON:0005039 ! implied link automatically realized ! mucosa of bronchiole
relationship: part_of UBERON:0002188
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002188 ! respiratory bronchiole
[Term]
id: UBERON:0005042
name: mucosa of tympanic membrane
def: "A mucosa that is part of a tympanic membrane [Obol]." [OBOL:automatic]
synonym: "ear drum mucosa" EXACT [OBOL:automatic]
synonym: "ear drum mucosa of organ" EXACT [OBOL:automatic]
synonym: "ear drum mucous membrane" EXACT [OBOL:automatic]
synonym: "ear drum organ mucosa" EXACT [OBOL:automatic]
synonym: "lateral wall of tympanic cavity mucosa" EXACT [OBOL:automatic]
synonym: "lateral wall of tympanic cavity mucosa of organ" EXACT [OBOL:automatic]
synonym: "lateral wall of tympanic cavity mucous membrane" EXACT [OBOL:automatic]
synonym: "lateral wall of tympanic cavity organ mucosa" EXACT [OBOL:automatic]
synonym: "membranous wall of tympanic cavity mucosa" EXACT [OBOL:automatic]
synonym: "membranous wall of tympanic cavity mucosa of organ" EXACT [OBOL:automatic]
synonym: "membranous wall of tympanic cavity mucous membrane" EXACT [OBOL:automatic]
synonym: "membranous wall of tympanic cavity organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of ear drum" EXACT [OBOL:automatic]
synonym: "mucosa of lateral wall of tympanic cavity" EXACT [OBOL:automatic]
synonym: "mucosa of membranous wall of tympanic cavity" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ear drum" EXACT [OBOL:automatic]
synonym: "mucosa of organ of lateral wall of tympanic cavity" EXACT [OBOL:automatic]
synonym: "mucosa of organ of membranous wall of tympanic cavity" EXACT [OBOL:automatic]
synonym: "mucosa of organ of Rivinus ' membrane" EXACT [OBOL:automatic]
synonym: "mucosa of organ of tympanic membrane" EXACT [OBOL:automatic]
synonym: "mucosa of Rivinus ' membrane" EXACT [OBOL:automatic]
synonym: "mucous membrane of ear drum" EXACT [OBOL:automatic]
synonym: "mucous membrane of lateral wall of tympanic cavity" EXACT [OBOL:automatic]
synonym: "mucous membrane of membranous wall of tympanic cavity" EXACT [OBOL:automatic]
synonym: "mucous membrane of Rivinus ' membrane" EXACT [OBOL:automatic]
synonym: "mucous membrane of tympanic membrane" EXACT [OBOL:automatic]
synonym: "organ mucosa of ear drum" EXACT [OBOL:automatic]
synonym: "organ mucosa of lateral wall of tympanic cavity" EXACT [OBOL:automatic]
synonym: "organ mucosa of membranous wall of tympanic cavity" EXACT [OBOL:automatic]
synonym: "organ mucosa of Rivinus ' membrane" EXACT [OBOL:automatic]
synonym: "organ mucosa of tympanic membrane" EXACT [OBOL:automatic]
synonym: "Rivinus ' membrane mucosa" EXACT [OBOL:automatic]
synonym: "Rivinus ' membrane mucosa of organ" EXACT [OBOL:automatic]
synonym: "Rivinus ' membrane mucous membrane" EXACT [OBOL:automatic]
synonym: "Rivinus ' membrane organ mucosa" EXACT [OBOL:automatic]
synonym: "tympanic membrane mucosa" EXACT [OBOL:automatic]
synonym: "tympanic membrane mucosa of organ" EXACT [OBOL:automatic]
synonym: "tympanic membrane mucous membrane" EXACT [OBOL:automatic]
synonym: "tympanic membrane organ mucosa" EXACT [OBOL:automatic]
xref: FMA:56844
is_a: UBERON:0005026 ! implied link automatically realized ! mucosa of middle ear
relationship: part_of UBERON:0002364
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002364 ! tympanic membrane
[Term]
id: UBERON:0005043
name: mucosa of nasolacrimal duct
def: "A mucosa that is part of a nasolacrimal duct [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of nasolacrimal duct" EXACT [OBOL:automatic]
synonym: "mucous membrane of nasolacrimal duct" EXACT [OBOL:automatic]
synonym: "nasolacrimal duct mucosa" EXACT [OBOL:automatic]
synonym: "nasolacrimal duct mucosa of organ" EXACT [OBOL:automatic]
synonym: "nasolacrimal duct mucous membrane" EXACT [OBOL:automatic]
synonym: "nasolacrimal duct organ mucosa" EXACT [OBOL:automatic]
synonym: "organ mucosa of nasolacrimal duct" EXACT [OBOL:automatic]
xref: FMA:59664
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
relationship: part_of UBERON:0002392
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002392 ! nasolacrimal duct
[Term]
id: UBERON:0005044
name: mucosa of pharyngotympanic tube
def: "A mucosa that is part of a pharyngotympanic tube [Obol]." [OBOL:automatic]
synonym: "auditory tube mucosa" EXACT [OBOL:automatic]
synonym: "auditory tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "auditory tube mucous membrane" EXACT [OBOL:automatic]
synonym: "auditory tube organ mucosa" EXACT [OBOL:automatic]
synonym: "internal auditory tube mucosa" EXACT [OBOL:automatic]
synonym: "internal auditory tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "internal auditory tube mucous membrane" EXACT [OBOL:automatic]
synonym: "internal auditory tube organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of auditory tube" EXACT [OBOL:automatic]
synonym: "mucosa of internal auditory tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of auditory tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of internal auditory tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of pharyngotympanic tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of auditory tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of internal auditory tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of pharyngotympanic tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of auditory tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of internal auditory tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of pharyngotympanic tube" EXACT [OBOL:automatic]
synonym: "pharyngotympanic tube mucosa" EXACT [OBOL:automatic]
synonym: "pharyngotympanic tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "pharyngotympanic tube mucous membrane" EXACT [OBOL:automatic]
synonym: "pharyngotympanic tube organ mucosa" EXACT [OBOL:automatic]
xref: FMA:60109
is_a: UBERON:0005026 ! implied link automatically realized ! mucosa of middle ear
relationship: part_of UBERON:0002393
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002393 ! pharyngotympanic tube
[Term]
id: UBERON:0005045
name: mucosa of ethmoidal sinus
def: "A mucosa that is part of a ethmoid sinus [Obol]." [OBOL:automatic]
synonym: "ethmoid sinus mucosa" EXACT [OBOL:automatic]
synonym: "ethmoid sinus mucosa of organ" EXACT [OBOL:automatic]
synonym: "ethmoid sinus mucous membrane" EXACT [OBOL:automatic]
synonym: "ethmoid sinus organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of ethmoid sinus" EXACT [OBOL:automatic]
synonym: "mucosa of organ of ethmoid sinus" EXACT [OBOL:automatic]
synonym: "mucous membrane of ethmoid sinus" EXACT [OBOL:automatic]
synonym: "organ mucosa of ethmoid sinus" EXACT [OBOL:automatic]
xref: FMA:59776
is_a: UBERON:0005030 ! implied link automatically realized ! mucosa of paranasal sinus
relationship: part_of UBERON:0002453
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002453 ! ethmoid sinus
[Term]
id: UBERON:0005046
name: mucosa of hard palate
def: "A mucosa that is part of a hard palate [Obol]." [OBOL:automatic]
synonym: "hard palate mucosa" EXACT [OBOL:automatic]
synonym: "hard palate mucosa of organ" EXACT [OBOL:automatic]
synonym: "hard palate mucous membrane" EXACT [OBOL:automatic]
synonym: "hard palate organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of organ of hard palate" EXACT [OBOL:automatic]
synonym: "mucous membrane of hard palate" EXACT [OBOL:automatic]
synonym: "organ mucosa of hard palate" EXACT [OBOL:automatic]
xref: FMA:59783
is_a: UBERON:0005019 ! implied link automatically realized ! mucosa of palate
relationship: part_of UBERON:0003216
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0003216 ! hard palate
[Term]
id: UBERON:0005047
name: mucosa of vocal fold
def: "A mucosa that is part of a vocal cord [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of true vocal cord" EXACT [OBOL:automatic]
synonym: "mucosa of organ of vocal cord" EXACT [OBOL:automatic]
synonym: "mucosa of true vocal cord" EXACT [OBOL:automatic]
synonym: "mucosa of vocal cord" EXACT [OBOL:automatic]
synonym: "mucous membrane of true vocal cord" EXACT [OBOL:automatic]
synonym: "mucous membrane of vocal cord" EXACT [OBOL:automatic]
synonym: "organ mucosa of true vocal cord" EXACT [OBOL:automatic]
synonym: "organ mucosa of vocal cord" EXACT [OBOL:automatic]
synonym: "true vocal cord mucosa" EXACT [OBOL:automatic]
synonym: "true vocal cord mucosa of organ" EXACT [OBOL:automatic]
synonym: "true vocal cord mucous membrane" EXACT [OBOL:automatic]
synonym: "true vocal cord organ mucosa" EXACT [OBOL:automatic]
synonym: "vocal cord mucosa" EXACT [OBOL:automatic]
synonym: "vocal cord mucosa of organ" EXACT [OBOL:automatic]
synonym: "vocal cord mucous membrane" EXACT [OBOL:automatic]
synonym: "vocal cord organ mucosa" EXACT [OBOL:automatic]
xref: FMA:64017
is_a: UBERON:0001824 ! implied link automatically realized ! mucosa of larynx
relationship: part_of UBERON:0003706
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0003706 ! vocal cord
[Term]
id: UBERON:0005048
name: mucosa of uterine tube
def: "A mucosa that is part of a fallopian tube [Obol]." [OBOL:automatic]
synonym: "fallopian tube mucosa" EXACT [OBOL:automatic]
synonym: "fallopian tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "fallopian tube mucous membrane" EXACT [OBOL:automatic]
synonym: "fallopian tube organ mucosa" EXACT [OBOL:automatic]
synonym: "mucosa of fallopian tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of fallopian tube" EXACT [OBOL:automatic]
synonym: "mucosa of organ of uterine tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of fallopian tube" EXACT [OBOL:automatic]
synonym: "mucous membrane of uterine tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of fallopian tube" EXACT [OBOL:automatic]
synonym: "organ mucosa of uterine tube" EXACT [OBOL:automatic]
synonym: "uterine tube mucosa" EXACT [OBOL:automatic]
synonym: "uterine tube mucosa of organ" EXACT [OBOL:automatic]
synonym: "uterine tube mucous membrane" EXACT [OBOL:automatic]
synonym: "uterine tube organ mucosa" EXACT [OBOL:automatic]
xref: FMA:18319
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0003889
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0003889 ! fallopian tube
[Term]
id: UBERON:0005049
name: mucosa of infundibulum of uterine tube
def: "A mucosa that is part of a uterine tube infundibulum [Obol]." [OBOL:automatic]
synonym: "mucosa of organ of uterine tube infundibulum" EXACT [OBOL:automatic]
synonym: "mucosa of uterine tube infundibulum" EXACT [OBOL:automatic]
synonym: "mucous membrane of uterine tube infundibulum" EXACT [OBOL:automatic]
synonym: "organ mucosa of uterine tube infundibulum" EXACT [OBOL:automatic]
synonym: "uterine tube infundibulum mucosa" EXACT [OBOL:automatic]
synonym: "uterine tube infundibulum mucosa of organ" EXACT [OBOL:automatic]
synonym: "uterine tube infundibulum mucous membrane" EXACT [OBOL:automatic]
synonym: "uterine tube infundibulum organ mucosa" EXACT [OBOL:automatic]
xref: FMA:18357
is_a: UBERON:0005048 ! implied link automatically realized ! mucosa of uterine tube
relationship: part_of UBERON:0003984
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0003984 ! uterine tube infundibulum
[Term]
id: UBERON:0005050
name: liver papillary process
synonym: "papillary process of caudate lobe of liver" EXACT [FMA:14506]
synonym: "processus papillaris" EXACT [FMA:14506]
xref: FMA:14506
xref: MA:0001643
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0005051
name: mediastinum testis
def: "The mediastinum testis is a network of fibrous connective tissue that extends from the upper to near the lower extremity of the testis, and is wider above than below. From its front and sides numerous imperfect septa (trabeculæ) are given off, which radiate toward the surface of the organ, and are attached to the tunica albuginea. They divide the interior of the organ into a number of incomplete spaces, called lobules. These are somewhat cone-shaped, being broad at their bases at the surface of the gland, and becoming narrower as they converge to the mediastinum. The mediastinum supports the rete testis and blood vessels of the testis in their passage to and from the substance of the gland[WP]" [Wikipedia:Mediastinum_testis]
xref: EMAPA:18331
xref: FMA:19812
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/b5/Hodenschema.svg/200px-Hodenschema.svg.png
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: has_part UBERON:0002384 ! connective tissue
relationship: overlaps UBERON:0003728 ! mediastinum
relationship: part_of UBERON:0000473 ! testis
[Term]
id: UBERON:0005052
name: gizzard
def: "The muscular enlargement of the alimentary canal that has usually thick muscular walls and a tough horny lining for grinding the food and when the crop is present follows it and the proventriculus." [BTO:0000520, Wikipedia:Gizzard]
comment: BTO also includes: A thickened part of the alimentary canal in some animals (as an insect or an earthworm) that is similar in function to the crop of a bird. WP says
synonym: "gastric mill" EXACT [Wikipedia:Gizzard]
synonym: "gigerium" EXACT [Wikipedia:Gizzard]
synonym: "ventriculus" RELATED [Wikipedia:Gizzard]
xref: BTO:0000520
xref: GAID:1238
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001555 ! digestive tract
[Term]
id: UBERON:0005053
name: nerve cord
def: "." [Wikipedia:Nerve_cord]
xref: BILA:0000136
xref: BTO:0001656
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0005054
name: dorsal nerve cord
def: "The dorsal tubular cord of nervous tissue above the notochord of a chordate that comprises or develops into the central nervous system[BTO]. The dorsal nerve cord is one of the embryonic features unique to chordates, along with a notochord, a post-anal tail and pharyngeal slits. The dorsal nerve cord is a hollow cord dorsal to the notochord. It is formed from a part of the ectoderm that rolls, forming the hollow tube, compared to other animal phyla, which have solid, ventral tubes. The dorsal nerve cord is later modified into the brain and spinal cord. Dorsal nerve cord is mainly found in phylum Vertebrata[WP]." [BTO:0002329, Wikipedia:Dorsal_nerve_cord]
xref: BTO:0002329
is_a: UBERON:0005053 ! nerve cord
relationship: develops_from UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0005055
name: zone of long bone
def: "An organ part that is part of a long bone [Obol]." [OBOL:automatic]
subset: uberon_slim
synonym: "long bone zone" EXACT []
xref: FMA:24008
is_a: UBERON:0000064 ! implied link automatically realized ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002495
intersection_of: UBERON:0000064 ! organ part
intersection_of: part_of UBERON:0002495 ! long bone
relationship: part_of UBERON:0002428 ! limb bone
[Term]
id: UBERON:0005056
name: external female genitalia
def: "An external reproductive organ that is part of a female reproductive system [Obol]." [OBOL:automatic]
synonym: "external genitalia of female reproductive system" EXACT [OBOL:automatic]
synonym: "female external genitalia" EXACT [FMA:45649]
xref: FMA:45649
is_a: UBERON:0003134 ! implied link automatically realized ! female reproductive organ
is_a: UBERON:0004176 ! implied link automatically realized ! external reproductive organ
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000474
intersection_of: UBERON:0004176 ! external reproductive organ
intersection_of: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0005057
name: immune organ
def: "An organ that is part of a immune system [Obol]." [OBOL:automatic]
is_a: UBERON:0000062 ! implied link automatically realized ! organ
relationship: part_of UBERON:0002405
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002405 ! immune system
[Term]
id: UBERON:0005058
name: hemolymphoid system gland
def: "A gland that is part of a hemolymphoid system [Obol]." [OBOL:automatic]
synonym: "hemopoietic or lymphoid gland" EXACT [GOC:cjm]
synonym: "hemopoietic or lymphoid organ" BROAD [GO:0048534]
xref: MA:0002962
is_a: UBERON:0002530 ! implied link automatically realized ! gland
relationship: part_of UBERON:0002193
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0002193 ! hemolymphoid system
[Term]
id: UBERON:0005059
name: Drosophila lymph gland
def: "The lymph gland is one of the sites of hemocyte differentiation. It consists of three to six bilaterally paired lobes that are attached to the cardioblasts during larval stages, and it degenerates during pupal stages[GO]." [GO:0048542]
synonym: "lymph gland" EXACT SENSU [FBbt:00001668]
xref: FBbt:00001668
is_a: UBERON:0000062 ! organ
disjoint_from: UBERON:0000029 ! lymph node
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0005061
name: neural groove
def: "A U-shaped structure formed when the edges of the neural plate thicken // The median dorsal longitudinal groove formed in the embryo by the neural plate after the appearance of the neural folds." [GO:0001842, GOC:cjm]
xref: XAO:0000248
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0003075 ! neural plate
[Term]
id: UBERON:0005062
name: neural fold
def: "One of the two edges of the neural groove." [GO:0001842]
xref: EHDAA2:0001249
xref: EMAPA:16090
xref: EMAPA:16093
xref: EMAPA:16142
xref: EMAPA:16146
xref: EMAPA:16151
xref: EMAPA:16155
xref: EMAPA:16159
xref: EMAPA:16162
xref: EMAPA:16288
xref: EMAPA:16292
xref: EMAPA:16295
xref: EMAPA:16299
xref: EMAPA:16303
xref: EMAPA:16307
xref: EMAPA:16528
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005157 ! epithelial fold
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0003075 ! neural plate
[Term]
id: UBERON:0005063
name: left ventricular compact myocardium
def: "." [GO:0003224]
is_a: UBERON:0004127 ! implied link automatically realized ! compact layer of ventricle
relationship: part_of UBERON:0002084
intersection_of: UBERON:0004127 ! compact layer of ventricle
intersection_of: part_of UBERON:0002084 ! left ventricle
[Term]
id: UBERON:0005064
name: left ventricular trabecular myocardium
def: "." [GO:0003225]
is_a: UBERON:0004126 ! implied link automatically realized ! trabecular layer of ventricle
relationship: part_of UBERON:0002084
intersection_of: UBERON:0004126 ! trabecular layer of ventricle
intersection_of: part_of UBERON:0002084 ! left ventricle
[Term]
id: UBERON:0005065
name: right ventricular compact myocardium
def: "." [GO:0003226]
is_a: UBERON:0004127 ! implied link automatically realized ! compact layer of ventricle
relationship: part_of UBERON:0002080
intersection_of: UBERON:0004127 ! compact layer of ventricle
intersection_of: part_of UBERON:0002080 ! right ventricle
[Term]
id: UBERON:0005066
name: right ventricular trabecular myocardium
def: "." [GO:0003227]
is_a: UBERON:0004126 ! implied link automatically realized ! trabecular layer of ventricle
relationship: part_of UBERON:0002080
intersection_of: UBERON:0004126 ! trabecular layer of ventricle
intersection_of: part_of UBERON:0002080 ! right ventricle
[Term]
id: UBERON:0005067
name: amphid sensory organ
def: "Amphid sensory organs are the sensory organs of nematodes[GO]." [GO:0003386]
synonym: "amphid sensillum" EXACT []
xref: WBbt:0005391
is_a: UBERON:0000020 ! sense organ
[Term]
id: UBERON:0005068
name: neural rod
def: "a solid rod of neurectoderm derived from the neural keel. The neural rod is roughly circular in cross section. Neural rod formation occurs during primary neurulation in teleosts[GO]. An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube[ZFIN]." [GO:0014024, ZFA:0000133]
xref: ZFA:0000133
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0002346 ! neural ectoderm
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0005069
name: neural fold hinge point
def: "The median hinge point extends for the entire length of the neural tube, and the lateral hinge points do not form in the spinal cord region of the neural tube[GO]." [GO:0021504]
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0005070
name: anterior neuropore
def: "The anterior neuropore appears before the process of neural tube closure is complete[GO]." [GO:0021506]
xref: EMAPA:16523
xref: HOG:0000768
is_a: UBERON:0005077 ! neuropore
[Term]
id: UBERON:0005071
name: posterior neuropore
def: "The posterior neuropore appears before the process of neural tube closure is complete[GO]." [GO:0021507]
xref: EMAPA:16526
xref: HOG:0000769
is_a: UBERON:0005077 ! neuropore
[Term]
id: UBERON:0005073
name: preganglionic parasympathetic nervous system
is_a: UBERON:0000011 ! parasympathetic nervous system
[Term]
id: UBERON:0005074
name: postganglionic parasympathetic nervous system
is_a: UBERON:0000011 ! parasympathetic nervous system
relationship: develops_from UBERON:0005073 ! preganglionic parasympathetic nervous system
[Term]
id: UBERON:0005075
name: forebrain-midbrain boundary
xref: ZFA:0001367
is_a: UBERON:0000015 ! implied link automatically realized ! anatomical boundary
relationship: adjacent_to UBERON:0001890
relationship: adjacent_to UBERON:0001891
intersection_of: UBERON:0000015 ! anatomical boundary
intersection_of: adjacent_to UBERON:0001890 ! forebrain
intersection_of: adjacent_to UBERON:0001891 ! midbrain
[Term]
id: UBERON:0005076
name: hindbrain-spinal cord boundary
is_a: UBERON:0000015 ! implied link automatically realized ! anatomical boundary
relationship: adjacent_to UBERON:0002028
relationship: adjacent_to UBERON:0002240
intersection_of: UBERON:0000015 ! anatomical boundary
intersection_of: adjacent_to UBERON:0002028 ! hindbrain
intersection_of: adjacent_to UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0005077
name: neuropore
def: "Joined neural folds at either end of the neural tube.[GO]." [GO:0021995]
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0005078
name: lamina terminalis
def: ".[GO]." [GO:0021996]
xref: AAO:0000881
xref: EHDAA2:0000903
xref: EMAPA:16649
xref: EMAPA:16904
xref: FMA:61975
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0005070 ! anterior neuropore
[Term]
id: UBERON:0005079
name: eggshell
def: "a product of the somatic follicle cell epithelium and a structure that supports the egg in a hostile environment, minimizing water loss whilst allowing gas exchanges essential for embryonic respiration[GO]." [GO:0030703]
is_a: UBERON:0000476 ! acellular anatomical structure
[Term]
id: UBERON:0005080
name: metanephric ureteric bud
def: "A ureteric bud that is part of a metanephros [Obol]." [OBOL:automatic]
is_a: UBERON:0000084 ! implied link automatically realized ! ureteric bud
is_a: UBERON:0005106 ! implied link automatically realized ! metanephric tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0000084 ! ureteric bud
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005081
name: ureter ureteric bud
def: "The portion of the ureteric bud that contributes to the morphogenesis of the ureter. The ureter ureteric bud is the initial structure that forms the ureter[GO]." [GO:0035503]
is_a: UBERON:0000084 ! ureteric bud
relationship: develops_into UBERON:0000056
intersection_of: UBERON:0000084 ! ureteric bud
intersection_of: develops_into UBERON:0000056 ! ureter
[Term]
id: UBERON:0005082
name: tube lumen
def: "A hole in a tube[GO]." [GO:0060609]
xref: AEO:0000078
xref: EHDAA2:0003078
is_a: UBERON:0000464 ! implied link automatically realized ! anatomical space
relationship: surrounded_by UBERON:0000025
intersection_of: UBERON:0000464 ! anatomical space
intersection_of: surrounded_by UBERON:0000025 ! tube
[Term]
id: UBERON:0005083
name: nipple sheath
def: "a circular ingrowth of the epidermis around the region of the mammary sprout[GO]." [GO:0060659]
is_a: UBERON:0001003 ! epidermis
is_a: UBERON:0003244 ! implied link automatically realized ! epithelium of mammary gland
relationship: part_of UBERON:0002030 ! nipple
[Term]
id: UBERON:0005085
name: ectodermal placode
def: "An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm[GO]." [GO:0060788]
is_a: UBERON:0001048 ! implied link automatically realized ! primordium
relationship: part_of UBERON:0000924
intersection_of: UBERON:0001048 ! primordium
intersection_of: part_of UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0005086
name: hair follicle placode
def: "An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud[GO]." [GO:0060789]
is_a: UBERON:0001048 ! implied link automatically realized ! primordium
relationship: develops_into UBERON:0002073
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0002073 ! hair follicle
[Term]
id: UBERON:0005087
name: tooth placode
def: "An tooth placode is a thickening of the ectoderm that will give rise to the tooth bud[GO]." [GO:0060790]
xref: ZFA:0001153
is_a: UBERON:0001048 ! implied link automatically realized ! primordium
relationship: develops_into UBERON:0001091
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0005088
name: sebaceous gland placode
def: "A sebaceous gland placode is a thickening of the ectoderm that will give rise to the sebaceous gland bud[GO]." [GO:0060791]
is_a: UBERON:0001048 ! implied link automatically realized ! primordium
relationship: develops_into UBERON:0001821
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0001821 ! sebaceous gland
[Term]
id: UBERON:0005089
name: sweat gland placode
def: "An sweat gland placode is a thickening of the ectoderm that will give rise to the sweat gland bud[GO]." [GO:0060793]
is_a: UBERON:0001048 ! implied link automatically realized ! primordium
relationship: develops_into UBERON:0001820
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0001820 ! sweat gland
[Term]
id: UBERON:0005090
name: muscle structure
def: "Muscle structures are contractile cells, tissues or organs that are found in multicellular organisms[GO]." [GO:0061061]
xref: FBbt:00005073
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0005091
name: left horn of sinus venosus
xref: EHDAA2:0001840
xref: FMA:70321
xref: HOG:0000488
is_a: UBERON:0000061 ! anatomical structure
relationship: in_left_side_of UBERON:0002063 ! sinus venosus
[Term]
id: UBERON:0005092
name: right horn of sinus venosus
xref: EHDAA2:0001841
xref: FMA:70318
xref: HOG:0000489
is_a: UBERON:0000061 ! anatomical structure
relationship: in_right_side_of UBERON:0002063 ! sinus venosus
[Term]
id: UBERON:0005093
name: cement gland
def: "A simple mucus-secreting structure that is positioned at the front of the embryo, attaches the newly hatched embryo to a support before the hatchling can swim well or feed, and marks the anterior-most dorsal ectoderm[XAO]." [GO:0071570, XAO:0000033]
xref: XAO:0000033
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002530 ! gland
[Term]
id: UBERON:0005094
name: beak
def: "The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary ramaphotheca, mandibular ramaphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus[GO]. The beak, bill or rostrum is an external anatomical structure of birds which is used for eating and for grooming, manipulating objects, killing prey, probing for food, courtship and feeding young. The term beak is also used to refer to a similar mouthpart in some Ornithischian dinosaurs, monotremes, cephalopods, cetaceans, pufferfishes, turtles, Anuran tadpoles and sirens[WP]." [GO:0071728, Wikipedia:Beak]
comment: TODO - add superclass
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0005095
name: kidney rudiment
def: "A kidney is an organ that filters the blood and excretes the end products of body metabolism in the form of urine[GO]." [GO:0072003]
is_a: UBERON:0002050 ! implied link automatically realized ! embryonic structure
relationship: develops_into UBERON:0002113
intersection_of: UBERON:0002050 ! embryonic structure
intersection_of: develops_into UBERON:0002113 ! kidney
[Term]
id: UBERON:0005096
name: descending thin limb
def: "The descending thin limb is a part of the loop of Henle situated just after the proximal straight tubule (S3). It extends to the tip of the loop of Henle[GO]." [GO:0072022]
xref: FMA:17719
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001288 ! loop of Henle
relationship: part_of UBERON:0004136 ! intermediate tubule
[Term]
id: UBERON:0005097
name: connecting tubule
def: "The connecting tubule is a tubular segment of the nephron; it connects the distal convoluted tubule to the collecting duct[GO]." [GO:0072027]
synonym: "renal connecting tubule" EXACT [MA:0002610]
xref: EMAPA:27758
xref: EMAPA:27790
xref: EMAPA:27865
xref: EMAPA:28011
xref: MA:0002610
is_a: UBERON:0001231 ! renal tubule
[Term]
id: UBERON:0005099
name: short descending thin limb
def: "The short descending thin limb is the descending thin limb of a short nephron that has a squamous epithelial morphology[GO]." [GO:0072063]
comment: TODO - epithelium types
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004211 ! implied link automatically realized ! nephron epithelium
relationship: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0005100
name: long descending thin limb
def: "The long descending limb starts in the inner stripe of the outer medulla and extends into the inner medulla[GO]." [GO:0072064]
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004211 ! implied link automatically realized ! nephron epithelium
relationship: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0005101
name: early distal convoluted tubule
def: "The early distal convoluted tubule contains DCT cells and is vasopressin-insensitive[GO]." [GO:0072067]
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004810 ! implied link automatically realized ! renal tubule epithelium
relationship: part_of UBERON:0001292 ! distal convoluted tubule
[Term]
id: UBERON:0005102
name: late distal convoluted tubule
def: "The late distal convoluted tubule contains DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]." [GO:0072068]
comment: TODO - CL
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004810 ! implied link automatically realized ! renal tubule epithelium
relationship: part_of UBERON:0001292 ! distal convoluted tubule
[Term]
id: UBERON:0005103
name: mesonephric epithelium
def: "An epithelium that is part of a mesonephros [Obol]." [OBOL:automatic]
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004819 ! implied link automatically realized ! kidney epithelium
relationship: part_of UBERON:0000080
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005104
name: anterior mesonephric tubule
def: "The anterior mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]." [GO:0072165]
is_a: UBERON:0000083 ! mesonephric tubule
[Term]
id: UBERON:0005105
name: posterior mesonephric tubule
def: "The posterior mesonephric tubule is an epithelial tube that is part of the mesonephros[GO]." [GO:0072166]
is_a: UBERON:0000083 ! mesonephric tubule
[Term]
id: UBERON:0005106
name: metanephric tubule
def: "A metanephric tubule is an epithelial tube that is part of the metanephros[GO]." [GO:0072173]
xref: HOG:0001526
is_a: UBERON:0003914 ! implied link automatically realized ! epithelial tube
is_a: UBERON:0005108 ! implied link automatically realized ! metanephric epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0003914 ! epithelial tube
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005107
name: metanephric cap
def: "The metanephric cap is formed by the condensation of metanephric mesenchymal cells surrounding the ureteric bud tip[GO]. Mesenchyme closely apposed to the tips of the buds is called cap mesenchyme; it will later go on to form nephrons etc[GUDMAP]." [GO:0072185, http://www.gudmap.org/About/Tutorial/DevMUS.html#DMK_Nephron]
comment: TODO - check EMAPA
synonym: "cap mesenchyme" EXACT [EMAPA:27621]
xref: EMAPA:27621
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0003220 ! metanephric blastema
relationship: surrounds UBERON:0000084 ! ureteric bud
[Term]
id: UBERON:0005108
name: metanephric epithelium
def: "An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure[GO]." [GO:0072207]
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004819 ! implied link automatically realized ! kidney epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005109
name: metanephric smooth muscle tissue
def: ".[GO]." [GO:0072208]
is_a: UBERON:0005321 ! implied link automatically realized ! mesonephric smooth muscle tissue
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005110
name: metanephric nephron
alt_id: UBERON:0005142
def: "A metanephric nephron is the functional unit of the metanephros[GO]." [GO:0072273]
xref: HOG:0000719
is_a: UBERON:0001285 ! implied link automatically realized ! nephron
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001285 ! nephron
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005111
name: metanephric pyramid
def: "Metanephric pyramids are the conical masses that constitute the renal medulla in a metanephros; they contain the loops of Henle and the medullary collecting ducts[GO]." [GO:0072211]
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004200 ! implied link automatically realized ! kidney pyramid
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004200 ! kidney pyramid
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005113
name: metanephric cortex
def: "The metanephric cortex is the outer region of the metanephros[GO]." [GO:0072214]
is_a: UBERON:0001225 ! implied link automatically realized ! cortex of kidney
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005114
name: metanephric ascending thin limb
def: "The metanephric ascending thin limb is a segment of a nephron tubule in the metanephros lying in the inner medulla that is permeable to ions but not to water and has a simple epithelium; active transepithelial solute transport is absent[GO]." [GO:0072218]
is_a: UBERON:0004193 ! implied link automatically realized ! loop of Henle ascending limb thin segment
is_a: UBERON:0005146 ! implied link automatically realized ! metanephric nephron tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004193 ! loop of Henle ascending limb thin segment
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005115
name: metanephric cortical collecting duct
def: "The metanephric cortical collecting duct is the portion of the metanephric collecting duct that resides in the renal cortex[GO]." [GO:0072219]
is_a: UBERON:0004203 ! implied link automatically realized ! cortical collecting duct
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004203 ! cortical collecting duct
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005116
name: metanephric descending thin limb
def: "It extends to the tip of the metanephric loop of Henle[GO]." [GO:0072220]
is_a: UBERON:0005096 ! implied link automatically realized ! descending thin limb
relationship: part_of UBERON:0000081
intersection_of: UBERON:0005096 ! descending thin limb
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005117
name: metanephric distal convoluted tubule
def: "The metanephric distal convoluted tubule is a portion of the metanephric nephron tubule that connects the metanephric loop of Henle to the collecting duct[GO]." [GO:0072221]
is_a: UBERON:0001292 ! implied link automatically realized ! distal convoluted tubule
is_a: UBERON:0005129 ! implied link automatically realized ! metanephric distal tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001292 ! distal convoluted tubule
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005118
name: metanephric early distal convoluted tubule
def: "The metanephric early distal convoluted tubule contains metanephric DCT cells and is vasopressin-insensitive[GO]." [GO:0072222]
is_a: UBERON:0005101 ! implied link automatically realized ! early distal convoluted tubule
is_a: UBERON:0005134 ! implied link automatically realized ! metanephric nephron epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0005101 ! early distal convoluted tubule
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005119
name: metanephric glomerular mesangium
def: "The metanephric glomerular mesangium is the thin membrane connective tissue composed of mesangial cells in the metanephros, which helps to support the capillary loops in a renal glomerulus[GO]." [GO:0072223]
is_a: UBERON:0002320 ! implied link automatically realized ! glomerular mesangium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0002320 ! glomerular mesangium
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005120
name: metanephric late distal convoluted tubule
def: "The metanephric late distal convoluted tubule contains metanephric DCT cells and intercalated (IC) alpha and beta cells and is vasopressin-sensitive[GO]." [GO:0072225]
is_a: UBERON:0005102 ! implied link automatically realized ! late distal convoluted tubule
is_a: UBERON:0005134 ! implied link automatically realized ! metanephric nephron epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0005102 ! late distal convoluted tubule
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005121
name: metanephric long descending thin limb bend
def: "The metanephric long descending thin limb bend is a part of the descending thin limb of a long nephron that lies beyond the prebend segment in the metanephros[GO]." [GO:0072226]
is_a: UBERON:0004206 ! implied link automatically realized ! long descending thin limb bend
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004206 ! long descending thin limb bend
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005122
name: metanephric macula densa
def: "The metanephric macula densa is an area of specialized cells in the distal tubule of the metanephros that makes contact with the vascular pole of the glomerulus[GO]." [GO:0072227]
is_a: UBERON:0002335 ! implied link automatically realized ! macula densa
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0000081
intersection_of: UBERON:0002335 ! macula densa
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005123
name: metanephric prebend segment
def: "The metanephric prebend segment is a part of the metanephric descending thin limb that lies before the bend and exhibits permeabilities characteristic of the ascending limb, especially negligible water permeability[GO]." [GO:0072228]
is_a: UBERON:0004207 ! implied link automatically realized ! prebend segment
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004207 ! prebend segment
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005124
name: metanephric proximal convoluted tubule
def: "The metanephric proximal convoluted tubule is the most proximal portion of the metanephric proximal tubule and extends from the metanephric glomerular capsule to the metanephric proximal straight tubule[GO]." [GO:0072229]
is_a: UBERON:0001287 ! implied link automatically realized ! proximal convoluted tubule
is_a: UBERON:0005151 ! implied link automatically realized ! metanephric proximal tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001287 ! proximal convoluted tubule
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005125
name: metanephric proximal straight tubule
def: "The metanephric proximal straight tubule is the part of the metanephric descending limb that extends from the metanephric proximal convoluted tubule to the metanephric descending thin tubule[GO]." [GO:0072230]
is_a: UBERON:0001290 ! implied link automatically realized ! proximal straight tubule
is_a: UBERON:0005146 ! implied link automatically realized ! metanephric nephron tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001290 ! proximal straight tubule
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005126
name: metanephric S1
def: "The S1 portion is the initial portion of the metanephric proximal convoluted tubule and is responsible for avid reabsorption of water and solutes[GO]." [GO:0072231]
is_a: UBERON:0004196 ! implied link automatically realized ! S1 portion of tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004196 ! S1 portion of tubule
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005127
name: metanephric thick ascending limb
def: "At the macula densa, the thick ascending limb connects to the distal convoluted tubule[GO]." [GO:0072233]
is_a: UBERON:0001291 ! implied link automatically realized ! thick ascending limb of loop of Henle
is_a: UBERON:0005129 ! implied link automatically realized ! metanephric distal tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001291 ! thick ascending limb of loop of Henle
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005129
name: metanephric distal tubule
alt_id: UBERON:0005150
def: "The metanephric distal tubule is a metanephric nephron tubule that begins at the metanephric macula densa and extends to the metanephric connecting tubule[GO]." [GO:0072235]
is_a: UBERON:0004135 ! implied link automatically realized ! distal tubule
is_a: UBERON:0005146 ! implied link automatically realized ! metanephric nephron tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004135 ! distal tubule
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005130
name: metanephric loop of Henle
def: "The metanephric loop of Henle is a metanephric nephron tubule that connects the proximal convoluted tubule to the distal convoluted tubule in the metanephros[GO]." [GO:0072236]
is_a: UBERON:0001288 ! implied link automatically realized ! loop of Henle
is_a: UBERON:0005146 ! implied link automatically realized ! metanephric nephron tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001288 ! loop of Henle
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: part_of UBERON:0004136 ! intermediate tubule
[Term]
id: UBERON:0005132
name: metanephric long nephron
def: "Long nephrons are associated with juxtamedullary glomeruli and extend into the inner medulla in the metanephros[GO]." [GO:0072238]
is_a: UBERON:0004194 ! implied link automatically realized ! long nephron
is_a: UBERON:0005110 ! implied link automatically realized ! metanephric nephron
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004194 ! long nephron
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005133
name: metanephric glomerulus vasculature
alt_id: UBERON:0005143
def: "The metanephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the metanephric glomerulus[GO]." [GO:0072239]
is_a: UBERON:0004190 ! implied link automatically realized ! glomerulus vasculature
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004190 ! glomerulus vasculature
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005134
name: metanephric nephron epithelium
def: "The metanephric nephron epithelium is a tissue that covers the surface of a nephron in the metanephros[GO]." [GO:0072243]
is_a: UBERON:0004211 ! implied link automatically realized ! nephron epithelium
is_a: UBERON:0005108 ! implied link automatically realized ! metanephric epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004211 ! nephron epithelium
intersection_of: part_of UBERON:0000081 ! metanephros
relationship: surrounds UBERON:0001285 ! nephron
[Term]
id: UBERON:0005135
name: metanephric glomerular epithelium
def: "A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros[GO]." [GO:0072244]
is_a: UBERON:0004188 ! implied link automatically realized ! glomerular epithelium
is_a: UBERON:0005134 ! implied link automatically realized ! metanephric nephron epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004188 ! glomerular epithelium
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005136
name: metanephric glomerular endothelium
def: "The metanephric glomerular endothelium is an epithelial tissue that covers the internal surfaces of the glomerulus of the metanephros[GO]." [GO:0072264]
is_a: UBERON:0004189 ! implied link automatically realized ! glomerular endothelium
is_a: UBERON:0005134 ! implied link automatically realized ! metanephric nephron epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004189 ! glomerular endothelium
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005137
name: metanephric capsule
alt_id: UBERON:0005112
def: "The metanephric capsule is the tough fibrous layer surrounding the metanephros, covered in a thick layer of perinephric adipose tissue. It provides some protection from trauma and damage[GO]." [GO:0072213]
is_a: UBERON:0003893 ! implied link automatically realized ! capsule
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0000081
intersection_of: UBERON:0003893 ! capsule
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005139
name: metanephric long descending thin limb
def: "The long descending limb starts in the inner stripe of the outer medulla and extends into the inner medulla[GO]." [GO:0072269]
is_a: UBERON:0005100 ! implied link automatically realized ! long descending thin limb
is_a: UBERON:0005134 ! implied link automatically realized ! metanephric nephron epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0005100 ! long descending thin limb
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005140
name: metanephric short nephron
def: "Short nephrons are associated with mid-cortical and superficial glomeruli, are situated entirely in the outer medulla, and have no thin ascending limb[GO]." [GO:0072270]
is_a: UBERON:0004195 ! implied link automatically realized ! short nephron
is_a: UBERON:0005110 ! implied link automatically realized ! metanephric nephron
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004195 ! short nephron
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005141
name: metanephric short descending thin limb
def: "The metanephric short descending thin limb is the descending thin limb of a short nephron in the metanephros that has a squamous epithelial morphology[GO]." [GO:0072271]
is_a: UBERON:0005099 ! implied link automatically realized ! short descending thin limb
is_a: UBERON:0005134 ! implied link automatically realized ! metanephric nephron epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0005099 ! short descending thin limb
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005144
name: metanephric glomerular capillary
def: "This process pertains to the initial formation of a structure from unspecified parts[GO]." [GO:0072277]
is_a: UBERON:0004212 ! implied link automatically realized ! glomerular capillary
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004212 ! glomerular capillary
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005145
name: metanephric comma-shaped body
def: "The metanephric comma-shaped body is the precursor structure to the metanephric S-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]." [GO:0072278]
is_a: UBERON:0004198 ! implied link automatically realized ! comma-shaped body
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004198 ! comma-shaped body
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005146
name: metanephric nephron tubule
alt_id: UBERON:0005128
alt_id: UBERON:0005152
def: "A metanephric nephron tubule is an epithelial tube that is part of the metanephric nephron, the functional part of the metanephros[GO]." [GO:0072282]
is_a: UBERON:0001231 ! implied link automatically realized ! renal tubule
is_a: UBERON:0005106 ! implied link automatically realized ! metanephric tubule
is_a: UBERON:0005134 ! implied link automatically realized ! metanephric nephron epithelium
relationship: part_of UBERON:0000081
intersection_of: UBERON:0001231 ! renal tubule
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005147
name: metanephric renal vesicle
def: "The renal vesicle is the primordial structure of the metanephric nephron epithelium, and is formed by the condensation of mesenchymal cells[GO]." [GO:0072283]
is_a: UBERON:0004209 ! implied link automatically realized ! renal vesicle
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004209 ! renal vesicle
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005148
name: metanephric S-shaped body
def: "The metanephric S-shaped body is the successor of the metanephric comma-shaped body that contributes to the morphogenesis of a nephron in the metanephros[GO]." [GO:0072284]
is_a: UBERON:0004199 ! implied link automatically realized ! S-shaped body
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004199 ! S-shaped body
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005149
name: metanephric connecting tubule
def: "The metanephric connecting tubule is a tubular segment of the metanephric nephron; it connects the distal convoluted tubule to the collecting duct in the metanephros[GO]." [GO:0072286]
is_a: UBERON:0005097 ! implied link automatically realized ! connecting tubule
is_a: UBERON:0005146 ! implied link automatically realized ! metanephric nephron tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0005097 ! connecting tubule
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005151
name: metanephric proximal tubule
alt_id: UBERON:0005131
def: "The metanephric proximal tubule is a metanephric nephron tubule that connects Bowman's capsule to the descending thin limb of the loop of Henle in the metanephros. It has a brush border epithelial morphology[GO]." [GO:0072288]
is_a: UBERON:0004134 ! implied link automatically realized ! proximal tubule
is_a: UBERON:0005146 ! implied link automatically realized ! metanephric nephron tubule
relationship: part_of UBERON:0000081
intersection_of: UBERON:0004134 ! proximal tubule
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005153
name: epithelial bud
def: "A bud is a protrusion that forms from an epithelial sheet by localized folding." [GO:0060572]
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0005154
name: epithelial cord
comment: TODO - add superclass of developing structure
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0005155
name: open tracheal system
def: "An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster." [GO:0007424]
subset: uberon_slim
synonym: "invertebrate tracheal system" EXACT []
synonym: "open tracheal system" EXACT []
synonym: "tracheal system" BROAD SENSU [FBbt:00005024]
xref: FBbt:00005024
xref: SPD:0000427
xref: TADS:0000043
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0001004 ! implied link automatically realized ! respiratory system
[Term]
id: UBERON:0005156
name: reproductive structure
def: "An anatomical structure that is part of the reproductive system." [GOC:cjm]
synonym: "reproductive system structure" EXACT []
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0000990
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: part_of UBERON:0000990 ! reproductive system
[Term]
id: UBERON:0005157
name: epithelial fold
def: "An epithelial sheet bent on a linear axis." [GO:0060571]
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0005158
name: parenchyma of central nervous system
def: "A parenchyma that is part of a central nervous system [Obol]." [OBOL:automatic]
synonym: "central nervous system parenchyma" EXACT [OBOL:automatic]
synonym: "CNS parenchyma" EXACT [OBOL:automatic]
synonym: "parenchyma of central nervous system" EXACT []
synonym: "parenchyma of CNS" EXACT [OBOL:automatic]
is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001017
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0005159
name: pyramid of medulla oblongata
def: "The anterior or ventral portion of the medulla oblongata is named the pyramid and lies between the anterior median fissure and the antero-lateral sulcus. Its upper end is slightly constricted, and between it and the pons the fibers of the abducent nerve emerge; a little below the pons it becomes enlarged and prominent, and finally tapers into the anterior funiculus of the medulla spinalis, with which, at first sight, it appears to be directly continuous[WP]." [Wikipedia:Pyramid_(brainstem)]
synonym: "lobule VIII of Larsell" EXACT [FMA:75254]
synonym: "medullary pyramid" EXACT [FMA:75254]
synonym: "pyramid of medulla" EXACT [FMA:75254]
synonym: "pyramid of medulla oblongata" EXACT [Wikipedia:Pyramid_(brainstem)]
xref: FMA:75254
is_a: UBERON:0002678 ! regional part of medulla oblongata
disjoint_from: UBERON:0004200 ! kidney pyramid
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0005160
name: vestigial structure
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0005161
name: pelvic spur
def: "Pelvic spurs are the externally visible portion of the vestigial remnants of legs found on each side of the vent in primitive snakes, such as boas and pythons[1]. The remnants of a pelvis and femur, which have no connection with the spine, simply 'float' in the muscle mass[1]. The femur protrudes from the snake's body and is covered by a corneal spur, which resembles a claw[1]. Males' spurs are generally longer and more pointed than females', and are used for clasping and tickling during courtship and mating[2], as well as combat with other males in some species" [Wikipedia:Pelvic_spur]
synonym: "anal spur" EXACT [Wikipedia:Anal_spur]
is_a: UBERON:0000026 ! appendage
is_a: UBERON:0005160 ! vestigial structure
[Term]
id: UBERON:0005162
name: multi-cell-component structure
def: "A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part." [FBC:DOS]
xref: CARO:0001000
xref: FBbt:00007060
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0005164
name: ascending limb of loop of Henle
def: "." [Wikipedia:Ascending_limb_of_loop_of_Henle]
comment: TODO: thick/thin check. Also relationship to distal tubule. We need a home for MA:0002634-renal straight tubule
subset: uberon_slim
synonym: "ascending limb" BROAD []
synonym: "ascending limb of Henle's loop" EXACT []
synonym: "distal straight tubule" RELATED []
synonym: "loop of henle ascending limb" BROAD []
synonym: "thick ascending limb of Henle's loop" RELATED []
xref: EMAPA:28396
xref: FMA:17717
xref: MA:0001676
xref: ncithesaurus:Ascending_Limb_of_the_Henle_s_Loop
is_a: UBERON:0004135 ! distal tubule
relationship: part_of UBERON:0001288 ! loop of Henle
[Term]
id: UBERON:0005165
name: descending thin limb of loop of Henle
subset: uberon_slim
synonym: "descending thin limb" BROAD []
synonym: "loop of Henle descending thin limb" EXACT []
synonym: "pars descendens (tubulus attenuatus)" EXACT [FMA:17719]
synonym: "thin descending limb" BROAD []
xref: EMAPA:28325
xref: EMAPA:28355
xref: EMAPA:29681
xref: FMA:17719
xref: MA:0002625
is_a: UBERON:0001231 ! renal tubule
is_a: UBERON:0005310 ! implied link automatically realized ! pronephric nephron tubule
relationship: part_of UBERON:0001289 ! descending limb of loop of Henle
[Term]
id: UBERON:0005166
name: descending thick limb of loop of Henle
subset: uberon_slim
is_a: UBERON:0001231 ! renal tubule
is_a: UBERON:0005310 ! implied link automatically realized ! pronephric nephron tubule
relationship: part_of UBERON:0001289 ! descending limb of loop of Henle
[Term]
id: UBERON:0005167
name: papillary duct
def: "The terminal portions of the medullary collecting ducts are the papillary ducts, which end at the renal papilla and empty into a minor calyx." [Encyclopedia:http\://encyclopedia.thefreedictionary.com/]
synonym: "duct of Bellini" RELATED []
xref: BTO:0004540
xref: MA:0001646
is_a: UBERON:0001232 ! collecting duct of renal tubule
[Term]
id: UBERON:0005168
name: interlobular vein
def: "The venae stellatae join to form the interlobular veins, which pass inward between the rays, receive branches from the plexuses around the convoluted tubules, and, having arrived at the bases of the renal pyramids, join with the venae rectae" [Wikipedia:Interlobular_veins]
xref: EMAPA:28218
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Gray1128.png/200px-Gray1128.png
xref: MA:0002594
is_a: UBERON:0001638 ! vein
is_a: UBERON:0005269 ! implied link automatically realized ! renal cortex vein
relationship: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0005169
name: interstitial tissue
def: "connective tissue between the cellular elements of a structure." [http://medical-dictionary.thefreedictionary.com/tissue]
comment: todo - make connective tissue
synonym: "interstitium" EXACT []
is_a: UBERON:0003891 ! stroma
[Term]
id: UBERON:0005170
name: ovary stratum granulosum
xref: FMA:18660
xref: MA:0001460
is_a: UBERON:0000158 ! membranous layer
[Term]
id: UBERON:0005171
name: hepatic duct
def: "The hepatic duct is the duct that leads from the liver to the bile duct[GO]. A duct that carries bile from the liver to the small intestine[ZFA]." [GO:0061011]
comment: TODO - MA distinguishes between bile duct, hepatic duct, common bile duct and common hepatic duct. in FMA hepatic duct and common hepatic duct are the same
xref: EHDAA:3049
xref: EHDAA2:0000741
xref: galen:HepaticDuct
xref: HOG:0000219
xref: MA:0000357
xref: OpenCyc:Mx4rvWo8WJwpEbGdrcN5Y29ycA
xref: TAO:0001100
xref: ZFA:0001100
is_a: UBERON:0002394 ! bile duct
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0005172
name: abdomen organ
def: "An organ that is part of an abdomen [Obol]." [OBOL:automatic]
xref: MA:0000522
is_a: UBERON:0000062 ! implied link automatically realized ! organ
relationship: part_of UBERON:0000916
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0005173
name: abdominal segment organ
xref: MA:0000529
is_a: UBERON:0000062 ! implied link automatically realized ! organ
relationship: part_of UBERON:0000917
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0000917 ! abdominal segment
[Term]
id: UBERON:0005174
name: back organ
def: "An organ that is part of a back [Obol]." [OBOL:automatic]
xref: MA:0001901
is_a: UBERON:0005177 ! implied link automatically realized ! trunk organ
relationship: part_of UBERON:0001137
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0001137 ! back
[Term]
id: UBERON:0005175
name: chest organ
def: "An organ that is part of a chest [Obol]." [OBOL:automatic]
xref: MA:0000552
is_a: UBERON:0000062 ! implied link automatically realized ! organ
relationship: part_of UBERON:0001443
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0005176
name: tooth enamel organ
comment: TODO - check why this is part_of in MA
synonym: "enamel organ" EXACT [MP:0010747]
xref: MA:0001604
is_a: UBERON:0000062 ! implied link automatically realized ! organ
relationship: has_part UBERON:0001752
intersection_of: UBERON:0000062 ! organ
intersection_of: has_part UBERON:0001752 ! enamel
[Term]
id: UBERON:0005177
name: trunk organ
def: "An organ that is part of a trunk [Obol]." [OBOL:automatic]
xref: MA:0000516
is_a: UBERON:0000062 ! implied link automatically realized ! organ
relationship: part_of UBERON:0002100
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0005178
name: thoracic cavity organ
def: "An organ that is part of a thoracic cavity [Obol]." [OBOL:automatic]
xref: MA:0000557
is_a: UBERON:0000062 ! implied link automatically realized ! organ
relationship: part_of UBERON:0002224
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0005179
name: pelvis organ
def: "An organ that is part of a pelvis [Obol]." [OBOL:automatic]
xref: MA:0000543
is_a: UBERON:0005177 ! implied link automatically realized ! trunk organ
relationship: part_of UBERON:0002355
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0005180
name: lymph organ
def: "An organ that is part of a lymph [Obol]." [OBOL:automatic]
xref: MA:0000747
is_a: UBERON:0004177 ! implied link automatically realized ! hemopoietic organ
relationship: part_of UBERON:0002391
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0002391 ! lymph
[Term]
id: UBERON:0005181
name: thoracic segment organ
xref: MA:0000563
is_a: UBERON:0000062 ! implied link automatically realized ! organ
relationship: part_of UBERON:0003138
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0003138 ! thoracic segment
[Term]
id: UBERON:0005184
name: hair medulla
def: "Innermost layer of the hair shaft." [Wikipedia:Medulla_(hair)]
xref: BTO:0004671
xref: MA:0000158
is_a: UBERON:0000958 ! implied link automatically realized ! medulla
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001037
intersection_of: UBERON:0000958 ! medulla
intersection_of: part_of UBERON:0001037 ! strand of hair
[Term]
id: UBERON:0005185
name: renal medulla collecting duct
def: "A collecting duct of renal tubule that is part of a renal medulla [Obol]." [OBOL:automatic]
xref: MA:0002935
is_a: UBERON:0001232 ! implied link automatically realized ! collecting duct of renal tubule
relationship: part_of UBERON:0000362
intersection_of: UBERON:0001232 ! collecting duct of renal tubule
intersection_of: part_of UBERON:0000362 ! renal medulla
[Term]
id: UBERON:0005186
name: outer renal medulla collecting duct
def: "A collecting duct of renal tubule that is part of a outer medulla of kidney [Obol]." [OBOL:automatic]
xref: MA:0002599
is_a: UBERON:0005185 ! implied link automatically realized ! renal medulla collecting duct
relationship: part_of UBERON:0001293
intersection_of: UBERON:0001232 ! collecting duct of renal tubule
intersection_of: part_of UBERON:0001293 ! outer medulla of kidney
[Term]
id: UBERON:0005187
name: inner renal medulla collecting duct
def: "A collecting duct of renal tubule that is part of a inner medulla of kidney [Obol]." [OBOL:automatic]
xref: MA:0002598
is_a: UBERON:0005185 ! implied link automatically realized ! renal medulla collecting duct
relationship: part_of UBERON:0001294
intersection_of: UBERON:0001232 ! collecting duct of renal tubule
intersection_of: part_of UBERON:0001294 ! inner medulla of kidney
[Term]
id: UBERON:0005188
name: caput epididymis
is_obsolete: true
replaced_by: UBERON:0004358
[Term]
id: UBERON:0005189
name: corpus epididymis
is_obsolete: true
replaced_by: UBERON:0004359
[Term]
id: UBERON:0005190
name: cauda epididymis
is_obsolete: true
replaced_by: UBERON:0004360
[Term]
id: UBERON:0005191
name: cervical artery
def: "An artery that is part of a uterine cervix [Obol]." [OBOL:automatic]
xref: MA:0001936
is_a: UBERON:0002493 ! implied link automatically realized ! uterine artery
relationship: part_of UBERON:0000002
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0000002 ! uterine cervix
[Term]
id: UBERON:0005192
name: deferent duct artery
def: "An artery that is part of a vas deferens [Obol]." [OBOL:automatic]
xref: MA:0001940
is_a: UBERON:0001637 ! implied link automatically realized ! artery
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001000
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001000 ! vas deferens
[Term]
id: UBERON:0005193
name: ethmoidal artery
def: "An artery that is part of a ethmoid [Obol]." [OBOL:automatic]
xref: MA:0001949
is_a: UBERON:0001637 ! implied link automatically realized ! artery
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001679
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001679 ! ethmoid
[Term]
id: UBERON:0005194
name: thoracic vein
def: "A vein that is part of a thorax [Obol]." [OBOL:automatic]
xref: MA:0002235
is_a: UBERON:0001638 ! implied link automatically realized ! vein
is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel
relationship: part_of UBERON:0000915
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0005195
name: deferent duct vein
def: "A vein that is part of a vas deferens [Obol]." [OBOL:automatic]
xref: MA:0002100
is_a: UBERON:0001638 ! implied link automatically realized ! vein
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0001000
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001000 ! vas deferens
[Term]
id: UBERON:0005196
name: spleen germinal center
def: "A portion of secondary nodular lymphoid tissue that is part of a spleen [Obol]." [OBOL:automatic]
xref: MA:0000764
is_a: UBERON:0001745 ! implied link automatically realized ! secondary nodular lymphoid tissue
relationship: part_of UBERON:0002106
intersection_of: UBERON:0001745 ! secondary nodular lymphoid tissue
intersection_of: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0005197
name: segmental spinal nerve
def: "A spinal nerve that is part of a organismal segment [Obol]." [OBOL:automatic]
xref: HOG:0000920
xref: MA:0000234
is_a: UBERON:0001780 ! implied link automatically realized ! spinal nerve
relationship: part_of UBERON:0000914
intersection_of: UBERON:0001780 ! spinal nerve
intersection_of: part_of UBERON:0000914 ! organismal segment
[Term]
id: UBERON:0005198
name: coat hair bulb
is_obsolete: true
[Term]
id: UBERON:0005199
name: cervical mammary gland
def: "A lactiferous gland that is part of a uterine cervix [Obol]." [OBOL:automatic]
xref: MA:0000789
is_a: UBERON:0001911 ! implied link automatically realized ! mammary gland
is_a: UBERON:0005398 ! implied link automatically realized ! female reproductive gland
relationship: part_of UBERON:0000002
intersection_of: UBERON:0001911 ! mammary gland
intersection_of: part_of UBERON:0000002 ! uterine cervix
[Term]
id: UBERON:0005200
name: thoracic mammary gland
def: "A lactiferous gland that is part of a thorax [Obol]." [OBOL:automatic]
xref: MA:0000797
is_a: UBERON:0001911 ! implied link automatically realized ! mammary gland
relationship: part_of UBERON:0000915
intersection_of: UBERON:0001911 ! mammary gland
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0005201
name: cervical trunk
def: "A trunk that is part of a uterine cervix [Obol]." [OBOL:automatic]
xref: MA:0001937
is_a: UBERON:0002100 ! implied link automatically realized ! trunk
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000002
intersection_of: UBERON:0002100 ! trunk
intersection_of: part_of UBERON:0000002 ! uterine cervix
[Term]
id: UBERON:0005202
name: distal straight tubule macula densa
def: "A macula densa that is part of an ascending limb of loop of Henle [Obol]." [OBOL:automatic]
xref: MA:0002604
is_a: UBERON:0002335 ! implied link automatically realized ! macula densa
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0005164
intersection_of: UBERON:0002335 ! macula densa
intersection_of: part_of UBERON:0005164 ! ascending limb of loop of Henle
[Term]
id: UBERON:0005203
name: trachea gland
def: "A gland that is part of a submucosa of trachea [Obol]." [OBOL:automatic]
xref: MA:0002937
is_a: UBERON:0002530 ! implied link automatically realized ! gland
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
is_a: UBERON:0005178 ! implied link automatically realized ! thoracic cavity organ
relationship: part_of UBERON:0002202
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0002202 ! submucosa of trachea
[Term]
id: UBERON:0005204
name: larynx submucosa gland
def: "A gland that is part of a larynx submucosa [Obol]." [OBOL:automatic]
xref: MA:0002729
is_a: UBERON:0002530 ! implied link automatically realized ! gland
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0004778
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0004778 ! larynx submucosa
[Term]
id: UBERON:0005205
name: vagina stroma
def: "A stroma that is part of a vagina [Obol]." [OBOL:automatic]
xref: MA:0002737
is_a: UBERON:0003891 ! implied link automatically realized ! stroma
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000996
intersection_of: UBERON:0003891 ! stroma
intersection_of: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0005206
name: choroid plexus stroma
def: "A stroma that is part of a choroid plexus [Obol]." [OBOL:automatic]
xref: MA:0000825
is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
is_a: UBERON:0003891 ! implied link automatically realized ! stroma
relationship: part_of UBERON:0001886
intersection_of: UBERON:0003891 ! stroma
intersection_of: part_of UBERON:0001886 ! choroid plexus
[Term]
id: UBERON:0005207
name: tonsil capsule
def: "A capsule that is part of a tonsil [Obol]." [OBOL:automatic]
xref: MA:0000776
is_a: UBERON:0003893 ! implied link automatically realized ! capsule
relationship: part_of UBERON:0002372
intersection_of: UBERON:0003893 ! capsule
intersection_of: part_of UBERON:0002372 ! tonsil
[Term]
id: UBERON:0005208
name: right atrium valve
def: "A valve that is part of a right atrium [Obol]." [OBOL:automatic]
xref: MA:0001871
is_a: UBERON:0003978 ! implied link automatically realized ! valve
relationship: part_of UBERON:0002078
intersection_of: UBERON:0003978 ! valve
intersection_of: part_of UBERON:0002078 ! right atrium
[Term]
id: UBERON:0005211
name: renal medulla interstitium
def: "A portion of interstitial tissue that is part of a renal medulla [Obol]." [OBOL:automatic]
xref: MA:0002619
is_a: UBERON:0005215 ! implied link automatically realized ! kidney interstitium
relationship: part_of UBERON:0000362
intersection_of: UBERON:0005169 ! interstitial tissue
intersection_of: part_of UBERON:0000362 ! renal medulla
[Term]
id: UBERON:0005212
name: testis interstitial tissue
def: "A portion of interstitial tissue that is part of a testis [Obol]." [OBOL:automatic]
xref: MA:0002713
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
is_a: UBERON:0005169 ! implied link automatically realized ! interstitial tissue
relationship: part_of UBERON:0000473
intersection_of: UBERON:0005169 ! interstitial tissue
intersection_of: part_of UBERON:0000473 ! testis
[Term]
id: UBERON:0005213
name: outer renal medulla interstitium
def: "A portion of interstitial tissue that is part of a outer medulla of kidney [Obol]." [OBOL:automatic]
xref: MA:0002621
is_a: UBERON:0005211 ! implied link automatically realized ! renal medulla interstitium
relationship: part_of UBERON:0001293
intersection_of: UBERON:0005169 ! interstitial tissue
intersection_of: part_of UBERON:0001293 ! outer medulla of kidney
[Term]
id: UBERON:0005214
name: inner renal medulla interstitium
def: "A portion of interstitial tissue that is part of a inner medulla of kidney [Obol]." [OBOL:automatic]
xref: MA:0002620
is_a: UBERON:0005211 ! implied link automatically realized ! renal medulla interstitium
relationship: part_of UBERON:0001294
intersection_of: UBERON:0005169 ! interstitial tissue
intersection_of: part_of UBERON:0001294 ! inner medulla of kidney
[Term]
id: UBERON:0005215
name: kidney interstitium
def: "A portion of interstitial tissue that is part of a kidney [Obol]." [OBOL:automatic]
xref: MA:0002616
is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue
is_a: UBERON:0005169 ! implied link automatically realized ! interstitial tissue
relationship: part_of UBERON:0002113
intersection_of: UBERON:0005169 ! interstitial tissue
intersection_of: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0005216
name: optic eminence surface ectoderm
def: "An external ectoderm that is part of a optic eminence [Obol]." [OBOL:automatic]
xref: HOG:0000520
is_a: UBERON:0000076 ! implied link automatically realized ! external ectoderm
relationship: part_of UBERON:0004348
intersection_of: UBERON:0000076 ! external ectoderm
intersection_of: part_of UBERON:0004348 ! optic eminence
[Term]
id: UBERON:0005217
name: midbrain subarachnoid space
def: "A subarachnoid space that is part of a midbrain [Obol]." [OBOL:automatic]
xref: HOG:0001304
is_a: UBERON:0000315 ! implied link automatically realized ! subarachnoid space
relationship: part_of UBERON:0001891
intersection_of: UBERON:0000315 ! subarachnoid space
intersection_of: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0005218
name: diencephalon subarachnoid space
def: "A subarachnoid space that is part of a diencephalon [Obol]." [OBOL:automatic]
xref: HOG:0001302
is_a: UBERON:0000315 ! implied link automatically realized ! subarachnoid space
relationship: part_of UBERON:0001894
intersection_of: UBERON:0000315 ! subarachnoid space
intersection_of: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0005219
name: hindbrain subarachnoid space
def: "A subarachnoid space that is part of a hindbrain [Obol]." [OBOL:automatic]
xref: HOG:0001303
is_a: UBERON:0000315 ! implied link automatically realized ! subarachnoid space
relationship: part_of UBERON:0002028
intersection_of: UBERON:0000315 ! subarachnoid space
intersection_of: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0005220
name: pancreas head parenchyma
def: "A parenchyma that is part of a head of pancreas [Obol]." [OBOL:automatic]
xref: HOG:0000838
is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001069
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0001069 ! head of pancreas
[Term]
id: UBERON:0005221
name: liver right lobe parenchyma
def: "A parenchyma that is part of a right lobe of liver [Obol]." [OBOL:automatic]
xref: FMA:71657
xref: HOG:0000840
is_a: UBERON:0001280 ! implied link automatically realized ! liver parenchyma
relationship: part_of UBERON:0001114
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0001114 ! right lobe of liver
[Term]
id: UBERON:0005222
name: liver left lobe parenchyma
def: "A parenchyma that is part of a left lobe of liver [Obol]." [OBOL:automatic]
xref: HOG:0000839
is_a: UBERON:0001280 ! implied link automatically realized ! liver parenchyma
relationship: part_of UBERON:0001115
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0001115 ! left lobe of liver
[Term]
id: UBERON:0005223
name: pancreas body parenchyma
def: "A parenchyma that is part of a body of pancreas [Obol]." [OBOL:automatic]
xref: HOG:0000837
is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001150
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0001150 ! body of pancreas
[Term]
id: UBERON:0005224
name: pancreas tail parenchyma
def: "A parenchyma that is part of a tail of pancreas [Obol]." [OBOL:automatic]
xref: HOG:0000469
is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: part_of UBERON:0001151
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0001151 ! tail of pancreas
[Term]
id: UBERON:0005225
name: upper leg epithelium
def: "An epithelium that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
xref: HOG:0001041
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0000376
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0005226
name: foot digit epithelium
def: "An epithelium that is part of a toe [Obol]." [OBOL:automatic]
xref: HOG:0001031
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0001466
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0005227
name: hand digit epithelium
def: "An epithelium that is part of a finger [Obol]." [OBOL:automatic]
xref: HOG:0001032
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0002389
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0005228
name: upper arm epithelium
def: "An epithelium that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
xref: HOG:0000990
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0003822
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0005229
name: lower leg epithelium
def: "An epithelium that is part of a lower leg [Obol]." [OBOL:automatic]
xref: HOG:0001050
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0003823
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0005230
name: fundus epithelium
def: "An epithelium that is part of a ocular fundus [Obol]." [OBOL:automatic]
xref: HOG:0000878
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
relationship: part_of UBERON:0003951
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003951 ! ocular fundus
[Term]
id: UBERON:0005231
name: forelimb ectoderm
def: "An ectoderm that is part of a forelimb [Obol]." [OBOL:automatic]
xref: HOG:0001047
is_a: UBERON:0000924 ! implied link automatically realized ! ectoderm
relationship: part_of UBERON:0002102
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0005232
name: hindlimb ectoderm
def: "An ectoderm that is part of a hindlimb [Obol]." [OBOL:automatic]
xref: HOG:0001048
is_a: UBERON:0000924 ! implied link automatically realized ! ectoderm
relationship: part_of UBERON:0002103
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0005233
name: medial-nasal process ectoderm
def: "An ectoderm that is part of a medial nasal prominence [Obol]." [OBOL:automatic]
xref: HOG:0000803
is_a: UBERON:0000924 ! implied link automatically realized ! ectoderm
relationship: part_of UBERON:0004068
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0004068 ! medial nasal prominence
[Term]
id: UBERON:0005234
name: optic eminence ectoderm
def: "An ectoderm that is part of a optic eminence [Obol]." [OBOL:automatic]
xref: HOG:0001105
is_a: UBERON:0000924 ! implied link automatically realized ! ectoderm
relationship: part_of UBERON:0004348
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0004348 ! optic eminence
[Term]
id: UBERON:0005235
name: thyroid endoderm
def: "An endoderm that is part of a thyroid gland [Obol]." [OBOL:automatic]
xref: HOG:0001089
is_a: UBERON:0000925 ! implied link automatically realized ! endoderm
relationship: part_of UBERON:0002046
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0005236
name: osseus labyrinth vestibule
def: "A vestibule that is part of a bony labyrinth [Obol]." [OBOL:automatic]
comment: TODO - check
xref: GAID:881
xref: HOG:0001220
xref: MA:0001185
xref: XAO:0000199
is_a: UBERON:0001349 ! implied link automatically realized ! vestibule
relationship: part_of UBERON:0001839
intersection_of: UBERON:0001349 ! vestibule
intersection_of: part_of UBERON:0001839 ! bony labyrinth
relationship: part_of UBERON:0001839 ! bony labyrinth
[Term]
id: UBERON:0005238
name: tensor tympani muscle
def: "A muscle organ that is part of a tensor tympani [Obol]." [OBOL:automatic]
xref: HOG:0000698
is_a: UBERON:0002376 ! implied link automatically realized ! muscle of head
relationship: part_of UBERON:0001600
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001600 ! tensor tympani
[Term]
id: UBERON:0005239
name: basal plate metencephalon
def: "A metencephalon that is part of a basal plate [Obol]." [OBOL:automatic]
xref: HOG:0000320
is_a: UBERON:0001892 ! implied link automatically realized ! rhombomere
is_a: UBERON:0001895 ! implied link automatically realized ! metencephalon
relationship: part_of UBERON:0004064
intersection_of: UBERON:0001895 ! metencephalon
intersection_of: part_of UBERON:0004064 ! basal plate
[Term]
id: UBERON:0005240
name: basal plate medulla oblongata
def: "A medulla oblongata that is part of a basal plate [Obol]." [OBOL:automatic]
xref: HOG:0000324
is_a: UBERON:0001896 ! implied link automatically realized ! medulla oblongata
relationship: part_of UBERON:0004064
intersection_of: UBERON:0001896 ! medulla oblongata
intersection_of: part_of UBERON:0004064 ! basal plate
[Term]
id: UBERON:0005241
name: apical ectodermal ridge forelimb
def: "A forelimb that is part of an apical ectodermal ridge [Obol]." [OBOL:automatic]
xref: HOG:0001064
is_obsolete: true
[Term]
id: UBERON:0005242
name: apical ectodermal ridge hindlimb
def: "A hindlimb that is part of an apical ectodermal ridge [Obol]." [OBOL:automatic]
xref: HOG:0001066
is_obsolete: true
[Term]
id: UBERON:0005243
name: interventricular septum endocardium
def: "An endocardium that is part of a interventricular septum [Obol]." [OBOL:automatic]
synonym: "endocardium of interventricular septum" EXACT [FMA:83584]
xref: FMA:83584
xref: HOG:0000615
is_a: UBERON:0002165 ! implied link automatically realized ! endocardium
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002094
intersection_of: UBERON:0002165 ! endocardium
intersection_of: part_of UBERON:0002094 ! interventricular septum
[Term]
id: UBERON:0005244
name: lobar bronchus of right lung cranial lobe
def: "A lobar bronchus that is part of a upper lobe of right lung [Obol]." [OBOL:automatic]
xref: HOG:0000240
is_a: UBERON:0003404 ! implied link automatically realized ! lobar bronchus of right lung
relationship: part_of UBERON:0002170
intersection_of: UBERON:0002183 ! lobar bronchus
intersection_of: part_of UBERON:0002170 ! upper lobe of right lung
[Term]
id: UBERON:0005245
name: lobar bronchus of the right lung caudal lobe
def: "A lobar bronchus that is part of a lower lobe of right lung [Obol]." [OBOL:automatic]
xref: HOG:0000250
is_a: UBERON:0003404 ! implied link automatically realized ! lobar bronchus of right lung
relationship: part_of UBERON:0002171
intersection_of: UBERON:0002183 ! lobar bronchus
intersection_of: part_of UBERON:0002171 ! lower lobe of right lung
[Term]
id: UBERON:0005246
name: roof plate spinal cord
def: "A spinal cord that is part of a roof plate [Obol]." [OBOL:automatic]
xref: HOG:0000777
xref: ZFA:0001177
is_a: UBERON:0002240 ! implied link automatically realized ! spinal cord
relationship: part_of UBERON:0003054
intersection_of: UBERON:0002240 ! spinal cord
intersection_of: part_of UBERON:0003054 ! roof plate
[Term]
id: UBERON:0005247
name: floor plate spinal cord
def: "A spinal cord that is part of a floor plate [Obol]." [OBOL:automatic]
xref: HOG:0000787
xref: ZFA:0000890
is_a: UBERON:0002240 ! implied link automatically realized ! spinal cord
relationship: part_of UBERON:0003079
intersection_of: UBERON:0002240 ! spinal cord
intersection_of: part_of UBERON:0003079 ! floor plate
[Term]
id: UBERON:0005248
name: bulbus cordis myocardium
def: "A myocardium that is part of a bulbus cordis [Obol]." [OBOL:automatic]
xref: HOG:0000609
is_a: UBERON:0002349 ! implied link automatically realized ! myocardium
relationship: part_of UBERON:0004706
intersection_of: UBERON:0002349 ! myocardium
intersection_of: part_of UBERON:0004706 ! bulbus cordis
[Term]
id: UBERON:0005249
name: metanephros pelvis
def: "A pelvis that is part of a metanephros [Obol]." [OBOL:automatic]
xref: HOG:0000945
is_a: UBERON:0002355 ! implied link automatically realized ! pelvis
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0000081
intersection_of: UBERON:0002355 ! pelvis
intersection_of: part_of UBERON:0000081 ! metanephros
[Term]
id: UBERON:0005250
name: stomatodeum gland
xref: HOG:0000658
is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut
relationship: part_of UBERON:0000930
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000930 ! stomodeum
[Term]
id: UBERON:0005251
name: yolk sac cavity
def: "An anatomical cavity that is part of a yolk sac [Obol]." [OBOL:automatic]
synonym: "cavity of yolk sac" EXACT [FMA:63942]
xref: FMA:63942
xref: HOG:0000843
is_a: UBERON:0002553 ! implied link automatically realized ! anatomical cavity
relationship: part_of UBERON:0001040
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: part_of UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0005252
name: omental bursa cavity
def: "An anatomical cavity that is part of a lesser sac [Obol]." [OBOL:automatic]
synonym: "cavity of lesser sac" EXACT [FMA:9702]
xref: FMA:9702
xref: HOG:0000827
is_a: UBERON:0002553 ! implied link automatically realized ! anatomical cavity
relationship: part_of UBERON:0001341
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: part_of UBERON:0001341 ! lesser sac
[Term]
id: UBERON:0005253
name: head mesenchyme
def: "A mesenchyme that is part of a head [Obol]." [OBOL:automatic]
xref: HOG:0000332
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
relationship: part_of UBERON:0000033
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0005254
name: upper leg mesenchyme
def: "A mesenchyme that is part of a hindlimb stylopod [Obol]." [OBOL:automatic]
xref: HOG:0000506
is_a: UBERON:0003860 ! implied link automatically realized ! hindlimb mesenchyme
relationship: part_of UBERON:0000376
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000376 ! hindlimb stylopod
[Term]
id: UBERON:0005255
name: foot digit mesenchyme
def: "A mesenchyme that is part of a toe [Obol]." [OBOL:automatic]
xref: HOG:0000463
is_a: UBERON:0003860 ! implied link automatically realized ! hindlimb mesenchyme
relationship: part_of UBERON:0001466
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0005256
name: trunk mesenchyme
def: "A mesenchyme that is part of a trunk [Obol]." [OBOL:automatic]
xref: HOG:0000281
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
relationship: part_of UBERON:0002100
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0005257
name: hand digit mesenchyme
def: "A mesenchyme that is part of a finger [Obol]." [OBOL:automatic]
xref: HOG:0001416
is_a: UBERON:0003859 ! implied link automatically realized ! forelimb mesenchyme
relationship: part_of UBERON:0002389
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0005258
name: upper arm mesenchyme
def: "A mesenchyme that is part of a forelimb stylopod [Obol]." [OBOL:automatic]
xref: HOG:0000505
is_a: UBERON:0003859 ! implied link automatically realized ! forelimb mesenchyme
relationship: part_of UBERON:0003822
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003822 ! forelimb stylopod
[Term]
id: UBERON:0005259
name: lower leg mesenchyme
def: "A mesenchyme that is part of a lower leg [Obol]." [OBOL:automatic]
xref: HOG:0000752
is_a: UBERON:0003860 ! implied link automatically realized ! hindlimb mesenchyme
relationship: part_of UBERON:0003823
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003823 ! hindlimb zeugopod
[Term]
id: UBERON:0005260
name: foot plate mesenchyme
def: "A mesenchyme that is part of a foot plate [Obol]." [OBOL:automatic]
xref: HOG:0001055
is_a: UBERON:0003313 ! implied link automatically realized ! mesenchyme of embryo
relationship: part_of UBERON:0004343
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0004343 ! foot plate
[Term]
id: UBERON:0005261
name: atrium cardiac jelly
def: "A cardiac jelly that is part of an atrium [Obol]." [OBOL:automatic]
xref: HOG:0000941
is_a: UBERON:0003906 ! implied link automatically realized ! cardiac jelly
relationship: part_of UBERON:0001050
intersection_of: UBERON:0003906 ! cardiac jelly
intersection_of: part_of UBERON:0001050 ! atrium
[Term]
id: UBERON:0005262
name: ventricle cardiac jelly
def: "A cardiac jelly that is part of a ventricle [Obol]." [OBOL:automatic]
xref: HOG:0000943
is_a: UBERON:0003906 ! implied link automatically realized ! cardiac jelly
relationship: part_of UBERON:0002300
intersection_of: UBERON:0003906 ! cardiac jelly
intersection_of: part_of UBERON:0002300 ! ventricle
[Term]
id: UBERON:0005263
name: outflow tract cardiac jelly
def: "A cardiac jelly that is part of a outflow tract [Obol]." [OBOL:automatic]
xref: HOG:0000940
is_a: UBERON:0003906 ! implied link automatically realized ! cardiac jelly
relationship: part_of UBERON:0004145
intersection_of: UBERON:0003906 ! cardiac jelly
intersection_of: part_of UBERON:0004145 ! outflow tract
[Term]
id: UBERON:0005264
name: midbrain neural fold
def: "A neural fold that is part of a midbrain [Obol]." [OBOL:automatic]
xref: HOG:0000793
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
is_a: UBERON:0005062 ! implied link automatically realized ! neural fold
relationship: part_of UBERON:0001891
intersection_of: UBERON:0005062 ! neural fold
intersection_of: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0005265
name: hindbrain neural fold
def: "A neural fold that is part of a hindbrain [Obol]." [OBOL:automatic]
xref: HOG:0001211
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
is_a: UBERON:0005062 ! implied link automatically realized ! neural fold
relationship: part_of UBERON:0002028
intersection_of: UBERON:0005062 ! neural fold
intersection_of: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0005266
name: spinal cord neural fold
def: "A neural fold that is part of a spinal cord [Obol]." [OBOL:automatic]
xref: HOG:0000628
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
is_a: UBERON:0005062 ! implied link automatically realized ! neural fold
relationship: part_of UBERON:0002240
intersection_of: UBERON:0005062 ! neural fold
intersection_of: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0005267
name: renal cortex collecting duct
def: "A collecting duct of renal tubule that is part of a cortex of kidney [Obol]." [OBOL:automatic]
xref: MA:0002600
is_a: UBERON:0001232 ! implied link automatically realized ! collecting duct of renal tubule
relationship: part_of UBERON:0001225
intersection_of: UBERON:0001232 ! collecting duct of renal tubule
intersection_of: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0005268
name: renal cortex artery
def: "An artery that is part of a cortex of kidney [Obol]." [OBOL:automatic]
xref: MA:0002582
is_a: UBERON:0001184 ! implied link automatically realized ! renal artery
relationship: part_of UBERON:0001225
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0005269
name: renal cortex vein
def: "A vein that is part of a cortex of kidney [Obol]." [OBOL:automatic]
xref: MA:0002592
is_a: UBERON:0001140 ! implied link automatically realized ! renal vein
relationship: part_of UBERON:0001225
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0005270
name: renal cortex interstitium
def: "A portion of interstitial tissue that is part of a cortex of kidney [Obol]." [OBOL:automatic]
xref: MA:0002608
is_a: UBERON:0005215 ! implied link automatically realized ! kidney interstitium
relationship: part_of UBERON:0001225
intersection_of: UBERON:0005169 ! interstitial tissue
intersection_of: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0005271
name: juxtamedullary cortex
synonym: "inner cortex of kidney" EXACT [FMA:74288]
synonym: "juxtamedullary cortex of kidney" EXACT [FMA:74288]
xref: FMA:74288
xref: MA:0001648
is_a: UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0005272
name: peritubular capillary
def: "In the renal system, peritubular capillaries are tiny blood vessels that travel alongside nephrons allowing reabsorption and secretion between blood and the inner lumen of the nephron. Ions and minerals that need to be saved in the body are reabsorbed into the peritubular capillaries through active transport, secondary active transport, or transcytosis. The ions that need to be excreted as waste are secreted from the capillaries into the nephron to be sent towards the bladder and out of the body. The majority of exchange through the peritubular capillaries occurs because of chemical gradients, osmosis and Na+ pumps[WP]." [Wikipedia:Peritubular_capillaries]
xref: MA:0002588
is_a: UBERON:0003527 ! kidney capillary
[Term]
id: UBERON:0005273
name: nail bed
def: "Region of skin beneath the nail plate[WP]." [UBERON:gvg]
xref: HOG:0001362
xref: MA:0002706
is_a: UBERON:0005275 ! dorsal skin of digit
relationship: adjacent_to UBERON:0001705 ! nail
[Term]
id: UBERON:0005274
name: proximal nail bed
xref: MA:0002709
is_a: UBERON:0005275 ! dorsal skin of digit
[Term]
id: UBERON:0005275
name: dorsal skin of digit
synonym: "dorsal digit skin" EXACT []
synonym: "skin of dorsal part of digit" EXACT []
is_a: UBERON:0000014 ! zone of skin
is_a: UBERON:0001419 ! implied link automatically realized ! skin of limb
relationship: part_of UBERON:0002544 ! digit
[Term]
id: UBERON:0005276
name: dorsal skin of finger
comment: this class is explicitly the union of the two FMA classes
synonym: "dorsal finger skin" EXACT []
synonym: "skin of dorsal part of finger" EXACT [FMA:38320]
xref: FMA:38320
xref: FMA:60346
is_a: UBERON:0003533 ! implied link automatically realized ! hand digit skin
is_a: UBERON:0005275 ! implied link automatically realized ! dorsal skin of digit
relationship: part_of UBERON:0002389
intersection_of: UBERON:0005275 ! dorsal skin of digit
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0005277
name: dorsal skin of toe
comment: this class is explicitly the union of the two FMA classes
synonym: "dorsal toe skin" EXACT []
synonym: "skin of dorsal part of toe" EXACT [FMA:37868]
xref: FMA:37868
xref: FMA:60523
is_a: UBERON:0003530 ! implied link automatically realized ! foot digit skin
is_a: UBERON:0005275 ! implied link automatically realized ! dorsal skin of digit
relationship: part_of UBERON:0001466
intersection_of: UBERON:0005275 ! dorsal skin of digit
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0005278
name: nail bed of finger
xref: FMA:60348
is_a: UBERON:0005276 ! dorsal skin of finger
[Term]
id: UBERON:0005279
name: nail bed of toe
xref: FMA:60529
is_a: UBERON:0005277 ! dorsal skin of toe
[Term]
id: UBERON:0005280
name: head mesoderm
comment: check FBbt:00000127
xref: XAO:0000053
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0003063 ! prechordal plate
[Term]
id: UBERON:0005281
name: ventricular system of central nervous system
def: "a set of structures containing cerebrospinal fluid in the brain. It is continuous with the central canal of the spinal cord." [Wikipedia:Ventricular_system]
synonym: "ventricular system" EXACT [ZFA:0001261]
synonym: "ventricular system of neuraxis" EXACT [FMA:242675]
xref: FMA:242675
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/7/7d/Gray734.png/200px-Gray734.png
xref: TAO:0001261
xref: ZFA:0001261
xref: ZFIN:ZDB-ANAT-050711-70
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0005282
name: ventricular system of brain
xref: FMA:242787
xref: HOG:0000005
is_a: UBERON:0000467 ! anatomical system
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0000955 ! brain
relationship: part_of UBERON:0005281 ! ventricular system of central nervous system
[Term]
id: UBERON:0005283
name: tela choroidea
def: "Portion of tissue that is part of the primitive meninx which forms a fold, roofing a ventricle of the brain and supporting the choroid plexus." [ISBN:0030223695, ISBN:0683014617, ZFA:0000447]
comment: TODO check relationship to choroid plexus - MP implies it is part of, as does WP. ZF def implies adjacency
synonym: "tela chorioidea" RELATED [FMA:242849]
xref: EHDAA:7567
xref: EHDAA2:0000250
xref: EMAPA:17548
xref: FMA:242849
xref: TAO:0000447
xref: ZFA:0000447
is_a: UBERON:0000479 ! portion of tissue
relationship: overlaps UBERON:0001886 ! choroid plexus
relationship: overlaps UBERON:0002360 ! meninx
[Term]
id: UBERON:0005284
name: brain vasculature
def: "A vasculature that is part of a brain [Obol]." [OBOL:automatic]
synonym: "vasculature of brain" EXACT [FMA:242007]
xref: FMA:242007
xref: TAO:0000099
xref: ZFA:0000099
is_a: UBERON:0002200 ! implied link automatically realized ! vasculature of head
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0000955
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0005286
name: tela choroidea of tectal ventricle
def: "Tela choroidea that lines the tectal ventricle." [ZFIN:curator]
synonym: "tela chorioidea tectal ventricle" EXACT [ZFA:0005157]
synonym: "tela choroidea of cerebral aqueduct" EXACT [OBOL:automatic]
synonym: "tela choroidea tectal ventricle" EXACT [ZFA:0005157]
xref: ZFA:0005157
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
is_a: UBERON:0005283 ! tela choroidea
relationship: part_of UBERON:0002289
intersection_of: UBERON:0005283 ! tela choroidea
intersection_of: part_of UBERON:0002289 ! cerebral aqueduct
relationship: part_of UBERON:0002289 ! cerebral aqueduct
[Term]
id: UBERON:0005287
name: tela choroidea of fourth ventricle
def: "Tela chorioidea that lines the fourth ventricle." [ZFIN:curator]
synonym: "tela chorioidea fourth ventricle" EXACT []
synonym: "tela choroidea fourth ventricle" EXACT []
synonym: "tela choroidea of fourth ventricle" EXACT []
xref: FMA:78493
xref: ZFA:0005158
xref: ZFIN:ZDB-ANAT-090922-200
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
is_a: UBERON:0005283 ! tela choroidea
relationship: part_of UBERON:0002422
intersection_of: UBERON:0005283 ! tela choroidea
intersection_of: part_of UBERON:0002422 ! fourth ventricle
relationship: part_of UBERON:0002422 ! fourth ventricle
[Term]
id: UBERON:0005288
name: tela choroidea of third ventricle
def: "Tela chorioidea that lines the third ventricle." [ZFIN:curator]
synonym: "tela chorioidea of third ventricle" EXACT []
synonym: "tela choroidea third ventricle" EXACT []
xref: FMA:78463
xref: ZFA:0005159
xref: ZFIN:ZDB-ANAT-090922-201
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
is_a: UBERON:0005283 ! tela choroidea
relationship: part_of UBERON:0002286
intersection_of: UBERON:0005283 ! tela choroidea
intersection_of: part_of UBERON:0002286 ! third ventricle
relationship: part_of UBERON:0002286 ! third ventricle
[Term]
id: UBERON:0005289
name: tela choroidea of telencephalic ventricle
def: "Tela chorioidea that lines the telencephalic ventricle." [ZFIN:curator]
synonym: "tela chorioidea of lateral ventricle" EXACT []
synonym: "tela chorioidea of telencephalic ventricle" EXACT []
synonym: "tela choroidea of lateral ventricle" EXACT []
synonym: "tela choroidea telencephalic ventricle" EXACT []
xref: FMA:83712
xref: ZFA:0005160
xref: ZFIN:ZDB-ANAT-090922-202
is_a: UBERON:0003714 ! implied link automatically realized ! neural tissue
is_a: UBERON:0005283 ! tela choroidea
relationship: part_of UBERON:0002285
intersection_of: UBERON:0005283 ! tela choroidea
intersection_of: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0005290
name: myelencephalon
def: "The posterior part of the developing vertebrate hindbrain or the corresponding part of the adult brain composed of the medulla oblongata and a portion of the fourth ventricle; as well as the glossopharyngeal nerve (CN IX), vagus nerve (CN X), accessory nerve (CN XI), hypoglossal nerve (CN XII), and a portion of the vestibulocochlear nerve (CN VIII).[BTO,WP]." [BTO:0000758, Wikipedia:Myelencephalon]
comment: the terms metencephalon and myelencephalon are only meaningful in mammals and birds - Neuroanatomy of the Zebrafish Brain. Note that its not clear if this refers to the developing medulla oblongata - MA (adult) has two distinct classes
subset: uberon_slim
xref: BTO:0000758
xref: EHDAA:5526
xref: EHDAA2:0001207
xref: EMAPA:17082
xref: HOG:0000456
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/5/54/EmbryonicBrain.svg/200px-EmbryonicBrain.svg.png
xref: MA:0000205
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0004733 ! implied link automatically realized ! segmental subdivision of hindbrain
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0005291
name: embryonic tissue
def: "A portion of tissue that is part of an embryo." [OBOL:automatic]
synonym: "developing tissue" RELATED []
synonym: "portion of embryonic tissue" EXACT [OBOL:automatic]
is_a: UBERON:0000479 ! implied link automatically realized ! portion of tissue
relationship: part_of UBERON:0000922
intersection_of: UBERON:0000479 ! portion of tissue
intersection_of: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0005292
name: extraembryonic tissue
def: "Portion of tissue that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [UBERON:cjm]
synonym: "extra-embryonic tissue" EXACT []
xref: BTO:0003360
xref: EFO:0001406
xref: MAT:0000061
xref: MIAA:0000061
is_a: UBERON:0000478 ! implied link automatically realized ! extraembryonic structure
is_a: UBERON:0000479 ! implied link automatically realized ! portion of tissue
relationship: adjacent_to UBERON:0002050
relationship: existence_starts_and_ends_during UBERON:0000068
intersection_of: UBERON:0000479 ! portion of tissue
intersection_of: adjacent_to UBERON:0002050 ! embryonic structure
intersection_of: existence_starts_and_ends_during UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0005293
name: cerebellum lobe
synonym: "cerebellar lobe" EXACT [FMA:242392]
synonym: "lobe of cerebellum" EXACT [FMA:242392]
xref: FMA:242392
xref: MA:0002963
xref: NIF_GrossAnatomy:birnlex_1076
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0005294
name: genital ridge
def: "The precursor to the gonads." [Wikipedia:Gonadal_ridge]
comment: TODO - check developmental relationships. merge with urogenital ridge?
synonym: "gonadal ridge" EXACT [Wikipedia:Gonadal_ridge]
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/3/30/Gray1106.png/200px-Gray1106.png
xref: XAO:0000018
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0004876 ! urogenital ridge
relationship: part_of UBERON:0004122 ! genitourinary system
[Term]
id: UBERON:0005295
name: sex cord
def: "Cordlike masses of epithelial tissue that invaginate from germinal epithelium of the gonad and give rise to seminiferous tubules and rete testes in the male, and primary ovarian follicles and rete ovarii in the female." [http://www.answers.com/topic/sex-cord, Wikipedia:Sex_cords]
synonym: "primitive sex cord" RELATED []
xref: EHDAA2:0001523
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0005294 ! genital ridge
[Term]
id: UBERON:0005296
name: ovary sex cord
def: "structures that develop from sex cords in the female. After further development they become the ovarian follicles." [Wikipedia:Cortical_cords]
comment: TODO check secondary vs cortical vs ovary
synonym: "cortical cord" RELATED []
synonym: "cortical sex cord" RELATED []
synonym: "ovary primitive sex cord" RELATED []
synonym: "secondary cord" RELATED []
xref: EHDAA:8130
xref: EHDAA2:0001363
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000992 ! ovary
[Term]
id: UBERON:0005297
name: testis sex cord
def: "The testis cords are precursors to the rete testis. They play several different roles in the development of the male genitals[WP]." [Wikipedia:Testis_cords]
comment: check primary vs testis
synonym: "primary sex cord" RELATED []
synonym: "testis cord" EXACT [MP:0006424]
synonym: "testis primitive sex cord" RELATED []
xref: EHDAA:8152
xref: EHDAA2:0002011
xref: EMAPA:29098
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000473 ! testis
[Term]
id: UBERON:0005298
name: skin of clitoris
def: "A zone of skin that is part of a clitoris [Obol]." [OBOL:automatic]
synonym: "clitoris skin" EXACT []
xref: FMA:20168
is_a: UBERON:0000014 ! implied link automatically realized ! zone of skin
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0002411
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002411 ! clitoris
[Term]
id: UBERON:0005299
name: prepuce of clitoris
def: "In female human anatomy, the clitoral hood, is a fold of skin that surrounds and protects the clitoral glans. It develops as part of the labia minora and is homologous with the foreskin (equally called prepuce) in male genitals." [Wikipedia:Clitoral_hood]
comment: Note FMA has FMA:27886 skin of prepuce of clitoris- how is this different?
synonym: "clitoral hood" EXACT [Wikipedia:Clitoral_hood]
synonym: "clitoral prepuce" EXACT []
synonym: "clitoris prepuce" EXACT []
synonym: "prepuce of female" EXACT [EMAPA:30699]
synonym: "prepuce of the clitoris" EXACT []
synonym: "preputium clitoridis" EXACT [Wikipedia:Clitoral_hood]
xref: EMAPA:30699
xref: FMA:20169
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/b/bd/Clitoris_outer_anatomy.gif/200px-Clitoris_outer_anatomy.gif
is_a: UBERON:0000475 ! organism subdivision
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0005298 ! skin of clitoris
[Term]
id: UBERON:0005300
name: reproductive gland
is_obsolete: true
replaced_by: UBERON:0003937
[Term]
id: UBERON:0005301
name: male preputial gland
def: "One of the sebaceous glands of the corona and neck of the glans penis." [MP:0002717]
synonym: "preputial gland" BROAD [BTO:0001111, EMAPA:30640]
synonym: "preputial gland of male" EXACT []
synonym: "preputial gland of penis" EXACT [FMA:19653]
xref: BTO:0001111
xref: EMAPA:30502
xref: EMAPA:30640
xref: EMAPA:30659
xref: FMA:19653
xref: MA:0000403
is_a: UBERON:0000359 ! implied link automatically realized ! preputial gland
is_a: UBERON:0003487 ! implied link automatically realized ! skin sebaceous gland
is_a: UBERON:0005399 ! implied link automatically realized ! male reproductive gland
relationship: part_of UBERON:0003101
intersection_of: UBERON:0000359 ! preputial gland
intersection_of: part_of UBERON:0003101 ! male organism
relationship: part_of UBERON:0001332 ! prepuce of penis
[Term]
id: UBERON:0005302
name: female preputial gland
def: "A preputial gland that is part of a female organism [Obol]." [OBOL:automatic]
comment: TODO: check MA terms
synonym: "clitoral gland" EXACT [MA:0001702]
synonym: "preputial gland of female" EXACT [EMAPA:30499]
xref: BTO:0003119
xref: EMAPA:30499
xref: EMAPA:30711
xref: MA:0001702
xref: MA:0001703
is_a: UBERON:0000359 ! implied link automatically realized ! preputial gland
relationship: part_of UBERON:0003100
intersection_of: UBERON:0000359 ! preputial gland
intersection_of: part_of UBERON:0003100 ! female organism
[Term]
id: UBERON:0005303
name: hypogastric nerve
def: "the transition between the superior hypogastric plexus and the inferior hypogastric plexus." [Wikipedia:Hypogastric_nerve]
comment: check plexus vs nerve. WP indicates it is a 'transition'
synonym: "hypogastric nerve plexus" EXACT [MA:0001140]
synonym: "hypogastric plexus" EXACT [EMAPA:18225]
xref: EMAPA:18225
xref: FMA:77596
xref: http://upload.wikimedia.org/wikipedia/commons/thumb/2/2d/Gray847.png/200px-Gray847.png
xref: MA:0001140
is_a: UBERON:0001816 ! autonomic nerve plexus
[Term]
id: UBERON:0005304
name: submucous nerve plexus
def: "The nerves of the small intestines are derived from the plexuses of parasympathetic nerves around the superior mesenteric artery. From this source they run to the myenteric plexus of nerves and ganglia situated between the circular muscular fibers and the mucosal cells. From this a secondary plexus, the plexus of the submucosa (Meissner's plexus, Submucous plexus, submucosal plexus) is derived, and it is formed by branches that have perforated the circular muscular fibers. This plexus lies in the submucous coat of the intestine; it also contains ganglia from which nerve fibers pass to the muscularis mucosae and to the mucous membrane. The nerve bundles of the submucous plexus are finer than those of the myenteric plexus. Its function is to innervate cells in the epithelial layer and the smooth muscle of the[WP]." [Wikipedia:Meissner's_plexus]
comment: check myenteric vs submucosal
synonym: "Henle's plexus" RELATED []
synonym: "meissner's plexus" RELATED []
synonym: "Meissner's plexus" RELATED [MA:0001149]
synonym: "submucosal nerve plexus" EXACT [FMA:21542, Wikipedia:Meissner's_plexus]
xref: FMA:21542
xref: GAID:801
xref: MA:0001149
is_a: UBERON:0001816 ! autonomic nerve plexus
relationship: part_of UBERON:0000429 ! enteric plexus
[Term]
id: UBERON:0005305
name: thyroid follicle
def: "Discrete, cystlike units of the thyroid gland that are lined with cuboidal epithelium and are filled with a colloid substance, about 30 to each lobule[BTO]." [BTO:0004708]
subset: uberon_slim
synonym: "thyroid gland follicle" EXACT []
xref: BTO:0004708
xref: FMA:68805
xref: MA:0000726
xref: TAO:0001072
xref: ZFA:0001072
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002046 ! thyroid gland
[Term]
id: UBERON:0005306
name: blastema
def: "A blastema is a mass of cells capable of growth and regeneration into organs or body parts. Historically blastema have been thought to be composed of undifferentiated pluripotent cells, but recent research indicates that in some organisms blastema may retain memory of tissue origin.[1] Blastemata are typically found in the early stages of an organism's development such as in embryos, and in the regeneration of tissues, organs and bone[WP]. A regenerating tissue composed of a proliferative mass of undifferentiated progenitor cells from which new differentiated structures arise[ZFA]." [Wikipedia:Blastema, ZFA:0001270, ZFIN:ZDB-PUB-061108-12]
synonym: "regeneration blastema" EXACT [ZFIN:ZDB-PUB-061108-12]
xref: BTO:0001638
xref: TAO:0001270
xref: ZFA:0001270
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0005307
name: chorion-containing eggshell
def: "An eggshell that contains chorion. An example of this is found in Drosophila melanogaster." [GO:0007304]
is_a: UBERON:0005079 ! eggshell
relationship: has_part UBERON:0000920 ! egg chorion
[Term]
id: UBERON:0005308
name: nephrostome
def: "The nephrostome is the opening of the pronephros into the body cavity[GO]." [GO:0039018]
xref: XAO:0000062
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0005309
name: pronephric nephron
def: "A pronephric nephron is the functional unit of the pronephros[GO]." [GO:0039019]
xref: XAO:0000285
xref: ZFA:0000151
is_a: UBERON:0001285 ! implied link automatically realized ! nephron
relationship: part_of UBERON:0002120
intersection_of: UBERON:0001285 ! nephron
intersection_of: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0005310
name: pronephric nephron tubule
def: "The pronephric nephron tubule is an epithelial tube that is part of the pronephric nephron and connects the filtration unit (glomerulus or glomus) of the pronephros to the pronephric duct[GO]." [GO:0039020]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0001231 ! implied link automatically realized ! renal tubule
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: part_of UBERON:0002120
intersection_of: UBERON:0001231 ! renal tubule
intersection_of: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0005311
name: mammary placode
def: "The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
comment: TODO develops_from
is_a: UBERON:0005085 ! ectodermal placode
[Term]
id: UBERON:0005312
name: primary ureteric bud
def: ".[GO]." [GO:0060682]
is_a: UBERON:0000084 ! ureteric bud
[Term]
id: UBERON:0005313
name: mammary duct terminal end bud
def: ".[GO]." [GO:0060763]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001765 ! lactiferous duct
[Term]
id: UBERON:0005314
name: alveolar primary septum
def: "A primary alveolar septum is a specialized epithelium that surrounds the saccule as it forms[GO]." [GO:0061143]
comment: TODO - check UBERON:0004893 interalveolar septum
is_a: UBERON:0000115 ! lung epithelium
relationship: surrounds UBERON:0000116 ! lung saccule
[Term]
id: UBERON:0005315
name: alveolar secondary septum
def: "A secondary alveolar septum is a specialized epithelium that subdivides the initial saccule[GO]." [GO:0061144]
comment: TODO - check UBERON:0004893 interalveolar septum
is_a: UBERON:0000115 ! lung epithelium
relationship: part_of UBERON:0000116 ! lung saccule
[Term]
id: UBERON:0005316
name: endocardial endothelium
def: "The endocardium is an anatomical structure comprised of an endothelium and an extracellular matrix that forms the innermost layer of tissue of the heart, and lines the heart chambers[GO]." [GO:0061147]
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004852 ! implied link automatically realized ! cardiovascular system endothelium
relationship: part_of UBERON:0002165
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0002165 ! endocardium
[Term]
id: UBERON:0005317
name: pulmonary artery endothelium
def: "An pulmonary artery endothelium is an epithelium that lines the pulmonary artery[GO]." [GO:0061155]
synonym: "pulmonary artery endothelial tube" EXACT [GO:0061155]
is_a: UBERON:0001917 ! implied link automatically realized ! endothelium of artery
relationship: part_of UBERON:0002012
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0002012 ! pulmonary artery
[Term]
id: UBERON:0005318
name: paramesonephric duct
def: "These ducts are made of tissue of mesodermal origin[GO]." [GO:0061205]
xref: EMAPA:27665
is_a: UBERON:0000058 ! duct
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0005319
name: mesonephric collecting duct
def: "The collecting duct is the final common path through which urine flows before entering the ureter and then emptying into the bladder[GO]." [GO:0061211]
xref: XAO:0000151
is_a: UBERON:0001232 ! implied link automatically realized ! collecting duct of renal tubule
relationship: part_of UBERON:0000080
intersection_of: UBERON:0001232 ! collecting duct of renal tubule
intersection_of: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005320
name: mesonephric juxtaglomerular apparatus
def: "The juxtaglomerular apparatus lies adjacent to the glomerulus and regulates kidney function by maintaining the blood flow to the kidney and the filtration rate[GO]." [GO:0061212]
is_a: UBERON:0002303 ! implied link automatically realized ! juxtaglomerular apparatus
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0000080
intersection_of: UBERON:0002303 ! juxtaglomerular apparatus
intersection_of: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005321
name: mesonephric smooth muscle tissue
def: ".[GO]." [GO:0061214]
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
relationship: part_of UBERON:0002113
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0005322
name: mesonephric nephron
def: "A nephron is the functional unit of the kidney[GO]." [GO:0061215]
xref: XAO:0000292
is_a: UBERON:0001285 ! implied link automatically realized ! nephron
relationship: part_of UBERON:0000080
intersection_of: UBERON:0001285 ! nephron
intersection_of: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005323
name: mesonephric mesenchyme
def: "Mesonephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the mesonephros[GO]." [GO:0061219]
xref: EMAPA:27585
xref: EMAPA:27661
xref: XAO:0000291
is_a: UBERON:0003918 ! implied link automatically realized ! mesenchyme of kidney
relationship: part_of UBERON:0000080
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005324
name: mesonephric macula densa
def: "The mesonephric macula densa is an area of specialized cells in the distal tubule of the mesonephros that makes contact with the vascular pole of the glomerulus[GO]." [GO:0061220]
is_a: UBERON:0002335 ! implied link automatically realized ! macula densa
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0000080
intersection_of: UBERON:0002335 ! macula densa
intersection_of: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005325
name: mesonephric glomerulus
def: "The mesonephric glomerulus is a capillary tuft which forms a close network with the visceral epithelium (podocytes) and the mesangium to form the filtration barrier and is surrounded by Bowman's capsule in nephrons of the mature vertebrate kidney, or mesonephros[GO]." [GO:0061224]
xref: EMAPA:30568
xref: EMAPA:30580
is_a: UBERON:0000074 ! implied link automatically realized ! renal glomerulus
relationship: part_of UBERON:0000080
intersection_of: UBERON:0000074 ! renal glomerulus
intersection_of: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005326
name: mesonephric glomerulus vasculature
def: "The mesonephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the mesonephric glomerulus[GO]." [GO:0061231]
is_a: UBERON:0004190 ! implied link automatically realized ! glomerulus vasculature
relationship: part_of UBERON:0000080
intersection_of: UBERON:0004190 ! glomerulus vasculature
intersection_of: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005327
name: mesonephric glomerular epithelium
def: "A mesonephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the mesonephros[GO]." [GO:0061232]
is_a: UBERON:0004188 ! implied link automatically realized ! glomerular epithelium
is_a: UBERON:0005330 ! implied link automatically realized ! mesonephric nephron epithelium
relationship: part_of UBERON:0000080
intersection_of: UBERON:0004188 ! glomerular epithelium
intersection_of: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005328
name: mesonephric comma-shaped body
def: "The mesonephric comma-shaped body is the precursor structure to the mesonephric S-shaped body that contributes to the morphogenesis of a nephron in the mesonephros[GO]." [GO:0061236]
is_a: UBERON:0004198 ! implied link automatically realized ! comma-shaped body
relationship: part_of UBERON:0000080
intersection_of: UBERON:0004198 ! comma-shaped body
intersection_of: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005329
name: mesonephric nephron tubule
def: "A mesonephric nephron tubule is an epithelial tube that is part of the mesonephric nephron, the functional part of the mesonephros[GO]." [GO:0061240]
comment: TODO - check renal tubule vs nephron tubule - assume for now. Also FMA has 'region of renal tubule' - not clear what is a subclass and what is a part
is_a: UBERON:0000083 ! implied link automatically realized ! mesonephric tubule
is_a: UBERON:0001231 ! renal tubule
is_a: UBERON:0005330 ! implied link automatically realized ! mesonephric nephron epithelium
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005330
name: mesonephric nephron epithelium
def: "The mesonephric nephron epithelium is a tissue that covers the surface of a nephron in the mesonephros[GO]." [GO:0061241]
is_a: UBERON:0004211 ! implied link automatically realized ! nephron epithelium
is_a: UBERON:0005103 ! implied link automatically realized ! mesonephric epithelium
relationship: part_of UBERON:0000080
intersection_of: UBERON:0004211 ! nephron epithelium
intersection_of: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005331
name: mesonephric renal vesicle
def: "The renal vesicle is the primordial structure of the mesonephric nephron epithelium, and is formed by the condensation of mesenchymal cells[GO]." [GO:0061243]
is_a: UBERON:0004209 ! implied link automatically realized ! renal vesicle
relationship: part_of UBERON:0000080
intersection_of: UBERON:0004209 ! renal vesicle
intersection_of: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005332
name: mesonephric S-shaped body
def: "The mesonephric S-shaped body is the successor of the mesonephric comma-shaped body that contributes to the morphogenesis of a nephron in the mesonephros[GO]." [GO:0061244]
is_a: UBERON:0004199 ! implied link automatically realized ! S-shaped body
relationship: part_of UBERON:0000080
intersection_of: UBERON:0004199 ! S-shaped body
intersection_of: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0005333
name: mammary bud
def: "produced along the length of the embryonic mammary ridge these buds represent the future locations of the mammary glands. Invagination of ectoderm at each bud leads to the development of epithelial diverticula, later maturing as lactiferous ducts." [http://medical-dictionary.thefreedictionary.com/mammary+bud]
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0005153 ! epithelial bud
is_a: UBERON:0005291 ! implied link automatically realized ! embryonic tissue
relationship: develops_from UBERON:0005311 ! mammary placode
relationship: part_of UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0005334
name: oral lamina propria
synonym: "lamina propria of oral mucosa" EXACT []
xref: EMAPA:26947
is_a: UBERON:0004780 ! implied link automatically realized ! gastrointestinal system lamina propria
relationship: part_of UBERON:0003343
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0003343 ! mucosa of oral region
[Term]
id: UBERON:0005335
name: chorioallantoic membrane
def: "The chorioallantoic membrane ( also called the chorioallantois or abbreviated to CAM ) is a vascular membrane found in eggs of some amniotes, such as birds and reptiles. It is formed by the fusion of the mesodermal layers of two developmental structures: the allantois and the chorion. Three different layers compose the chorioallantoic membrane; these are called the chorionic epithelium, the mesenchyme and the allantoic epithelium. Blood capillaries and sinuses are found between epithelial cells of the chorionic layer, allowing close contact (within 0.2 N' shaped notch. The maxillary process forms the lateral wall and floor of the orbit, and in it are ossified the zygomatic bone and the greater part of the maxilla; it meets with the lateral nasal process, from which, however, it is separated for a time by a groove, the naso-optic furrow, that extends from the furrow encircling the eyeball to the olfactory pit. The maxillary processes ultimately fuse with the lateral nasal and globular processes, and form the lateral parts of the upper lip and the posterior boundaries of the nares. It is innervated by the maxillary nerve." [Wikipedia:Maxillary_prominence]
synonym: "maxillary process" EXACT [EHDAA2:0001070]
xref: EHDAA:5877
xref: EHDAA2:0001070
xref: EMAPA:17359
is_a: UBERON:0002050 ! embryonic structure
disjoint_from: UBERON:0005869 ! maxillary process of inferior nasal concha
relationship: develops_from UBERON:0004362 ! mandibular arch
relationship: part_of UBERON:0000166 ! oral opening
[Term]
id: UBERON:0005869
name: maxillary process of inferior nasal concha
def: "From the lower border of the inferior nasal concha, a thin lamina, the maxillary process, curves downward and lateralward; it articulates with the maxilla and forms a part of the medial wall of the maxillary sinus." [Wikipedia:Maxillary_process_of_inferior_nasal_concha]
synonym: "maxillary process of inferior concha" EXACT [FMA:54741]
synonym: "maxillary process of inferior nasal turbinate" EXACT [FMA:54741]
synonym: "maxillary process of inferior turbinate" EXACT [FMA:54741]
synonym: "processus maxillaris (concha nasalis inferior)" EXACT [FMA:54741]
xref: FMA:54741
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0005922 ! inferior nasal concha
[Term]
id: UBERON:0005870
name: olfactory pit
def: "By the upgrowth of the surrounding parts the olfactory areas are converted into pits, the olfactory pits, which indent the fronto-nasal process and divide it into a medial and two lateral nasal processes[WP]. an indentation of the olfactory placode which ends when the pits hollows out to form the nasopharynx[GO]." [GO:0060166, Wikipedia:Olfactory_pit]
comment: we represent the relationship as develops from, though in fact the pit is formed as an indentation in the placode
synonym: "nasal pit" EXACT [XAO:0000275]
xref: EHDAA:4772
xref: EHDAA2:0001295
xref: EMAPA:16800
xref: XAO:0000275
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: develops_from UBERON:0003050 ! olfactory placode
[Term]
id: UBERON:0005871
name: palatine process of maxilla
def: "The palatine process of the maxilla (palatal process), thick and strong, is horizontal and projects medialward from the nasal surface of the bone. It forms a considerable part of the floor of the nose and the roof of the mouth and is much thicker in front than behind. Its inferior surface is concave, rough and uneven, and forms, with the palatine process of the opposite bone, the anterior three-fourths of the hard palate. It is perforated by numerous foramina for the passage of the nutrient vessels; is channelled at the back part of its lateral border by a groove, sometimes a canal, for the transmission of the descending palatine vessels and the anterior palatine nerve from the spheno-palatine ganglion; and presents little depressions for the lodgement of the palatine glands. When the two maxillae are articulated, a funnel-shaped opening, the incisive foramen, is seen in the middle line, immediately behind the incisor teeth. In this opening the orifices of two lateral canals are visible; they are named the incisive canals or foramina of Stenson; through each of them passes the terminal branch of the descending palatine artery and the nasopalatine nerve. Occasionally two additional canals are present in the middle line; they are termed the foramina of Scarpa, and when present transmit the nasopalatine nerves, the left passing through the anterior, and the right through the posterior canal. On the under surface of the palatine process, a delicate linear suture, well seen in young skulls, may sometimes be noticed extending lateralward and forward on either side from the incisive foramen to the interval between the lateral incisor and the canine tooth. The small part in front of this suture constitutes the premaxilla (os incisivum), which in most vertebrates forms an independent bone; it includes the whole thickness of the alveolus, the corresponding part of the floor of the nose and the anterior nasal spine, and contains the sockets of the incisor teeth. The upper surface of the palatine process is concave from side to side, smooth, and forms the greater part of the floor of the nasal cavity. It presents, close to its medial margin, the upper orifice of the incisive canal. The lateral border of the process is incorporated with the rest of the bone. The medial border is thicker in front than behind, and is raised above into a ridge, the nasal crest, which, with the corresponding ridge of the opposite bone, forms a groove for the reception of the vomer. The front part of this ridge rises to a considerable height, and is named the incisor crest; it is prolonged forward into a sharp process, which forms, together with a similar process of the opposite bone, the anterior nasal spine. The posterior border is serrated for articulation with the horizontal part of the palatine bone." [Wikipedia:Palatine_process_of_maxilla]
synonym: "palatal process" EXACT [Wikipedia:Palatine_process_of_maxilla]
synonym: "palatine process" EXACT [Wikipedia:Palatine_process_of_maxilla]
synonym: "processus palatinus (maxilla)" EXACT [FMA:52896]
xref: FMA:52896
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
is_a: UBERON:0004529 ! anatomical projection
is_a: UBERON:0004530 ! implied link automatically realized ! bony projection
relationship: part_of UBERON:0002397 ! maxilla
[Term]
id: UBERON:0005872
name: 1st arch branchial groove
xref: EHDAA2:0000008
is_a: UBERON:0005879 ! branchial groove
relationship: part_of UBERON:0004362 ! mandibular arch
[Term]
id: UBERON:0005873
name: 2nd arch branchial groove
xref: EHDAA2:0000054
is_a: UBERON:0005879 ! branchial groove
relationship: part_of UBERON:0003066 ! hyoid arch
[Term]
id: UBERON:0005874
name: 3rd arch branchial groove
xref: EHDAA2:0000071
is_a: UBERON:0005879 ! branchial groove
relationship: part_of UBERON:0003114 ! pharyngeal arch 3
[Term]
id: UBERON:0005875
name: 4th arch branchial groove
xref: EHDAA2:0000088
is_a: UBERON:0005879 ! branchial groove
relationship: part_of UBERON:0003115 ! pharyngeal arch 4
[Term]
id: UBERON:0005876
name: genital tubercle
def: "A genital tubercle is a body of tissue present in the development of the urinary and reproductive organs. It forms in the ventral, caudal region of mammalian embryos of both sexes, and eventually develops into a phallus. In the human fetus the genital tubercle develops around week 4 of gestation, and by week 9 becomes recognizably either a clitoris or penis. This should not be confused with the sinus tubercle which is a proliferation of endoderm induced by paramesonephic ducts. Even after the phallus is developed, the term genital tubercle remains, but only as the terminal end of it[2], which develops into either the glans penis or the glans clitoridis. The genital tubercle is sensitive to dihydrotestosterone and rich in 5-alpha-reductase, so that the amount of fetal testosterone present after the second month is a major determinant of phallus size at birth.[WP]." [Wikipedia:Genital_tubercle]
xref: EHDAA2:0000705
xref: EMAPA:17382
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: develops_from UBERON:0004874 ! somatopleure
relationship: part_of UBERON:0000990 ! reproductive system
[Term]
id: UBERON:0005879
name: branchial groove
def: "the counterpart of the branchial pouch on the ectodermal side. The first pharyngeal groove produces the external auditory meatus.[2] The rest (2, 3, and 4) are overlapped by the growing 2nd pharyngeal arch, and form the floor of the depression termed the cervical sinus, which opens ventrally, and finally obliterated[WP]." [Wikipedia:Pharyngeal_groove]
is_a: UBERON:0002050 ! embryonic structure
relationship: adjacent_to UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0005880
name: prepollex
def: "a rudimentary additional digit on the preaxial side of the thumb of certain amphibians and mammals[dictionary.com]. A prepollex does not contain phalanges nor does it articulate with a metacarpal. It articulates with elements of the carpal (wrist) skeleton[AAO:DB]. Two or more elements located ventral and medial to the metacarpal of digit II(I). The proximal prepollex is small and round whereas distal prepollex 1 is usually large and wedge-shaped. When more elements are present, they are smaller than previous elements." [AAO:0000852, AAO:Fabrezi_and_Alberch_1996, AAO:Maglia_et_al_2007]
comment: not homologous to digit 1 of tetrapods. TODO: add articulation relations
synonym: "cartilago pre-pollicis" RELATED [AAO:0000852]
synonym: "pseudothumb" RELATED [doi:10.1098/rsbl.2009.1038]
xref: AAO:0000852
is_a: UBERON:0005881 ! distal limb segment
[Term]
id: UBERON:0005881
name: distal limb segment
synonym: "limb outgrowth" RELATED []
is_a: UBERON:0002529 ! limb segment
[Term]
id: UBERON:0005882
name: alar plate
def: "the mantle layer of the neural tube that lies dorsal to the sulcus limitans and contains primarily sensory neurons and interneurons involved in communication of sensory impulses; the alar plate develops into the dorsal horn in the grey matter of the spinal cord." [MP:0009692, Wikipedia:Alar_plate]
synonym: "alar lamina" RELATED [Wikipedia:Alar_lamina]
synonym: "spinal cord alar column" EXACT [MP:0009692]
synonym: "spinal cord alar lamina" EXACT [MP:0009692]
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0005883
name: neural tube lateral wall mantle layer
xref: EHDAA2:0001261
is_a: UBERON:0004061 ! neural tube mantle layer
relationship: part_of UBERON:0005496 ! neural tube lateral wall
[Term]
id: UBERON:0005884
name: hyoid arch skeleton
xref: XAO:0003177
xref: ZFA:0001276
is_a: UBERON:0005886 ! implied link automatically realized ! branchial arch skeleton
relationship: part_of UBERON:0003066
intersection_of: UBERON:0000075 ! subdivision of skeletal system
intersection_of: part_of UBERON:0003066 ! hyoid arch
[Term]
id: UBERON:0005886
name: branchial arch skeleton
xref: XAO:0003180
xref: ZFA:0000095
is_a: UBERON:0000075 ! implied link automatically realized ! subdivision of skeletal system
relationship: part_of UBERON:0002539
intersection_of: UBERON:0000075 ! subdivision of skeletal system
intersection_of: part_of UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0005888
name: optic fiber layer
def: "Fiber layer adjacent the retinal ganglion cell layer which is comprised of their axons as they traverse to the optic nerve." [ZFA:0001619]
comment: TODO - check
xref: XAO:0003220
xref: ZFA:0001619
is_a: UBERON:0001781 ! layer of retina
is_a: UBERON:0003902 ! implied link automatically realized ! retinal neural layer
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0005889
name: zygote cortex
synonym: "cortex" RELATED [XAO:0000216]
xref: XAO:0000216
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0005890
name: gonad germinal epithelium
synonym: "coelomic epithelium" RELATED [EMAPA:17384]
synonym: "germinal epithelium" EXACT [EHDAA2:0000706]
xref: EHDAA2:0000706
xref: EMAPA:17384
xref: HOG:0000629
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004909 ! implied link automatically realized ! epithelium of gonad
relationship: part_of UBERON:0000991 ! gonad
relationship: part_of UBERON:0005891 ! coelomic epithelium
[Term]
id: UBERON:0005891
name: coelomic epithelium
def: "The epithelial lining of the coelom." [Wikipedia:Coelomic_epithelium, XAO:0000329]
xref: XAO:0000329
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: develops_from UBERON:0004871 ! somatic layer of lateral plate mesoderm
relationship: develops_from UBERON:0004872 ! splanchnic layer of lateral plate mesoderm
[Term]
id: UBERON:0005892
name: mesonephric early distal tubule
def: "The mesonephric equivalent of the ascending limb, or straight distal segment, of metanephric nephrons." [XB:curator]
synonym: "mesonephric ascending limb" RELATED [XAO:0000333]
synonym: "mesonephric straight distal segment" RELATED [XAO:0000333]
xref: XAO:0000333
is_a: UBERON:0000083 ! mesonephric tubule
relationship: develops_from UBERON:0005322 ! mesonephric nephron
[Term]
id: UBERON:0005893
name: leg bone
xref: MA:0000670
is_a: UBERON:0003464 ! hindlimb bone
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0005894
name: locomotive weight-bearing appendage
def: "A leg is a limb on which an animal walks and stands (GO:0035110)." [GO:0035110, Wikipedia:Leg]
comment: Functional grouping, currently encompasses vertebrate and insect legs
subset: functional_classification
synonym: "leg" RELATED []
is_a: UBERON:0000026 ! appendage
[Term]
id: UBERON:0005895
name: insect leg
def: "The walking appendages of each segment of the ventral adult external thorax." [FBbt:00004640]
xref: FBbt:00004640
xref: MAT:0000095
xref: MIAA:0000095
is_a: UBERON:0005894 ! locomotive weight-bearing appendage
[Term]
id: UBERON:0005896
name: jointed/prehensile appendage
def: "A jointed or prehensible appendage used for locomotion or manipulation. Examples: human arm, human leg, octopus tentacle, insect limb[Wikipedia]. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin[GO]." [GO:0035108, Wikipedia:Limb_(anatomy)]
synonym: "extremity" RELATED []
synonym: "limb" RELATED [BTO:0001492]
xref: AEO:0000172
xref: BTO:0001492
is_a: UBERON:0000026 ! appendage
[Term]
id: UBERON:0005897
name: hand bone
xref: MA:0000619
is_a: UBERON:0002428 ! implied link automatically realized ! limb bone
relationship: part_of UBERON:0002398
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0005899
name: foot bone
xref: GAID:192
xref: MA:0000643
is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone
relationship: part_of UBERON:0002387
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0005902
name: occipital region
def: "Anatomical cluster that is located in the posterior region of the cranium and forms the margin of the foramen magnum and occipital condyles." [TAO:0001414]
comment: TODO - check
xref: TAO:0001414
xref: XAO:0003173
xref: ZFA:0001414
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0005903
name: duct of seminal vesicle
synonym: "ductus excretorius (vesicula seminalis)" EXACT [FMA:19473]
synonym: "excretory duct of seminal gland" EXACT [FMA:19473]
synonym: "seminal vesicle duct" EXACT [FMA:19473]
xref: EMAPA:29282
xref: FMA:19473
is_a: UBERON:0000058 ! duct
is_a: UBERON:0005904 ! implied link automatically realized ! duct of male reproductive system
relationship: part_of UBERON:0000998 ! seminal vesicle
[Term]
id: UBERON:0005904
name: duct of male reproductive system
is_a: UBERON:0000058 ! implied link automatically realized ! duct
is_a: UBERON:0005156 ! implied link automatically realized ! reproductive structure
relationship: part_of UBERON:0000079
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0005905
name: insect labrum
def: "A mouthpart of insects." [Wikipedia:Insect_mouthparts#Labrum]
synonym: "labium" RELATED [BTO:0004104]
synonym: "labrum" RELATED [BTO:0004104]
xref: BTO:0004104
xref: FBbt:00004522
xref: HAO:0000456
xref: TADS:0000039
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0005906
name: serous sac
def: "Organ with organ cavity, which has as parts a serous membrane and a serous cavity . Examples: pleural sac, pericardial sac, tendon sheath, bursa." [FMA:9689]
xref: FMA:9689
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0005908
name: conjunctival sac
def: "Serous sac, which has as parts the conjunctiva and the cavity of conjunctiva. Examples: There are only two conjunctival sacs, the right and the left." [FMA:20291]
xref: FMA:20291
is_a: UBERON:0005906 ! serous sac
relationship: part_of UBERON:0000019 ! camera-type eye
relationship: part_of UBERON:0001811 ! conjunctiva
[Term]
id: UBERON:0005910
name: transitional epithelium
def: "Multilaminar epithelium, which of consists of more than one layer of epithelial cells, in contact with a basement membrane, that can undergo distention and contraction without losing its integrity and consistency. Examples: urothelium." [FMA:63914, Wikipedia:Transitional_epithelium]
comment: see comments for urothelium
synonym: "epithelium transitionale" EXACT [FMA:63914]
synonym: "urothelium" NARROW [EMAPA:28089, Wikipedia:Transitional_epithelium]
xref: FMA:63914
is_a: UBERON:0000486 ! multilaminar epithelium
is_a: UBERON:0005911 ! endo-epithelium
[Term]
id: UBERON:0005911
name: endo-epithelium
def: "Epithelium that derives from the endoderm. Examples: urothelium, transitional epithelium of ureter, epithelium of prostatic gland." [FMA:69065]
xref: FMA:69065
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
is_a: UBERON:0004119 ! implied link automatically realized ! endoderm-derived structure
relationship: develops_from UBERON:0000925
intersection_of: UBERON:0000483 ! epithelium
intersection_of: develops_from UBERON:0000925 ! endoderm
[Term]
id: UBERON:0005912
name: transitional epithelium of major calyx
synonym: "urothelium of major calyx" EXACT [OBOL:automatic]
xref: FMA:263266
is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa
is_a: UBERON:0004788 ! implied link automatically realized ! kidney pelvis urothelium
relationship: part_of UBERON:0005007
intersection_of: UBERON:0001254 ! urothelium of ureter
intersection_of: part_of UBERON:0005007 ! mucosa of major calyx
[Term]
id: UBERON:0005913
name: zone of bone organ
synonym: "bone organ zone" EXACT [FMA:10483]
xref: FMA:10483
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0001474 ! bone
[Term]
id: UBERON:0005919
name: supreme nasal concha
def: "a thin bony plate occasionally found projecting from the inner wall of the ethmoid labyrinth, above the bony superior nasal concha, and the mucous membrane covering the plate." [http://medical-dictionary.thefreedictionary.com/supreme+nasal+concha]
synonym: "highest nasal concha" EXACT [FMA:57457]
synonym: "supreme nasal turbinate" EXACT [FMA:57457]
synonym: "supreme turbinate" EXACT [FMA:57457]
xref: FMA:57457
is_a: UBERON:0003973 ! nasal concha of ethmoid bone
[Term]
id: UBERON:0005920
name: superior nasal concha
def: "The back part of the medial surface of the labyrinth of ethmoid is subdivided by a narrow oblique fissure, the superior meatus of the nose, bounded above by a thin, curved plate, the superior nasal concha. The bone found in superior nasal concha is part of the ethmoid bone." [Wikipedia:Superior_nasal_concha]
synonym: "superior concha" RELATED [Wikipedia:Superior_nasal_concha]
synonym: "superior nasal turbinate" EXACT [FMA:57458]
synonym: "superior turbinate" EXACT [FMA:57458]
xref: FMA:57458
is_a: UBERON:0003973 ! nasal concha of ethmoid bone
[Term]
id: UBERON:0005921
name: middle nasal concha
def: "The medial surface of the labyrinth of ethmoid consists of a thin lamella, which descends from the under surface of the cribriform plate, and ends below in a free, convoluted margin, the middle nasal concha. It is rough, and marked above by numerous grooves, directed nearly vertically downward from the cribriform plate; they lodge branches of the olfactory nerves, which are distributed to the mucous membrane covering the superior nasal concha." [Wikipedia:Middle_nasal_concha]
synonym: "middle concha" RELATED [Wikipedia:Middle_nasal_concha]
synonym: "middle nasal turbinate" EXACT [FMA:57459]
synonym: "middle turbinate" EXACT [FMA:57459]
xref: FMA:57459
is_a: UBERON:0003973 ! nasal concha of ethmoid bone
[Term]
id: UBERON:0005922
name: inferior nasal concha
def: "The inferior nasal concha (Inferior Turbinated Bone) is one of the turbinates in the nose. It extends horizontally along the lateral wall of the nasal cavity [Fig. 1] and consists of a of spongy bone, curled upon itself like a scroll. Each inferior nasal concha is considered a facial pair of bones since they arise from the maxillae bones and projects horizontally into the nasal cavity. They are also termed 'inferior nasal turbinates' because they function similar to that of a turbine. As the air passes through the turbinates, the air is churned against these mucosa-lined bones in order to receive warmth, moisture and cleansing. Superior to inferior nasal concha are the middle nasal concha and superior nasal concha which arise from the cranial portion of the skull. Hence, these two are considered as a part of the cranial bones. It has two surfaces, two borders, and two extremities." [Wikipedia:Inferior_nasal_concha]
comment: note that in FMA this is not classified with the other turbinates. In Uberon we subdivide the turbinates into the ethmoturbinates and the inferior turbinate. TODO: check ethmoidal process of inferior nasal concha
synonym: "inferior concha" RELATED [Wikipedia:Inferior_nasal_concha]
synonym: "inferior nasal turbinate" EXACT [FMA:54736]
synonym: "inferior turbinate" EXACT [FMA:54736]
synonym: "inferior turbinated" RELATED [Wikipedia:Inferior_nasal_concha]
xref: FMA:54736
is_a: UBERON:0001762 ! nasal concha
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0005925
name: ethmoidal process of inferior nasal concha
def: "Behind the lacrimal process of the inferior nasal conchae lies a broad, thin plate, the ethmoidal process, which ascends to join the uncinate process of the ethmoid; from its lower border a thin lamina, the maxillary process, curves downward and lateralward; it articulates with the maxilla and forms a part of the medial wall of the maxillary sinus." [Wikipedia:Ethmoidal_process_of_inferior_nasal_concha]
synonym: "ethmoidal process of inferior concha" EXACT [FMA:54742]
synonym: "ethmoidal process of inferior nasal turbinate" EXACT [FMA:54742]
synonym: "ethmoidal process of inferior turbinate" EXACT [FMA:54742]
synonym: "processus ethmoidalis (concha nasalis inferior)" EXACT [FMA:54742]
xref: FMA:54742
is_a: UBERON:0000073 ! implied link automatically realized ! regional part of nervous system
is_a: UBERON:0000078 ! implied link automatically realized ! mixed ectoderm/mesoderm/endoderm-derived structure
is_a: UBERON:0004530 ! bony projection
relationship: part_of UBERON:0005922 ! inferior nasal concha
[Term]
id: UBERON:0005928
name: external naris
def: "Surface structure that provides one of the small external openings of the head that give passage to air for breathing." [OMD:nostril, Wikipedia:Nostril]
comment: Fish have two pairs of external nostrils. There is a case for classifying ZFA:0001427 here as well as anterior naris.
synonym: "anterior naris" EXACT [ZFA:0001427]
synonym: "nostril" EXACT [FMA:59645, XAO:0003033]
xref: AAO:0000024
xref: EHDAA2:0001275
xref: FMA:59645
xref: HOG:0000544
xref: MA:0001320
xref: ncithesaurus:Nostril
xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA
xref: TAO:0001427
xref: XAO:0003033
xref: ZFA:0001427
is_a: UBERON:0000003 ! naris
is_a: UBERON:0003102 ! surface structure
[Term]
id: UBERON:0005931
name: primary choana
def: "initial opening of the nasal pits and olfactory sac of the embryo into the rostral part of the primordial oronasal cavity, before the formation of the secondary palate." [http://www.drugs.com/dict/primary-choana.html]
comment: TODO - check. MA says part_of external naris.
xref: EHDAA:9087
xref: EMAPA:17851
xref: MA:0001322
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0005928 ! external naris
[Term]
id: UBERON:0005932
name: bulb of hair follicle
comment: TODO - add distinct subclasses for coat hair vs vibrissa hair
synonym: "coat hair bulb" NARROW SENSU [MA:0000161]
synonym: "hair bulb" EXACT [FMA:70666]
synonym: "hair follicle bulb" EXACT [FMA:70666]
xref: FMA:70666
xref: MA:0000161
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002073 ! hair follicle
[Term]
id: UBERON:0005933
name: hair root sheath
xref: EMAPA:18772
xref: MA:0000162
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0005932 ! bulb of hair follicle
[Term]
id: UBERON:0005941
name: hair inner root sheath
def: "The cells of the inner root sheath are interlocked with those of the cuticle of the hair, firmly anchoring the hair in the follicle. The inner root sheath must grow at the same rate as the hair, or faster as it molds and guides the shaft in its passage outward[BTO]. the multilayered tube composed of terminally differentiated hair follicle keratinocytes that is surrounded by the outer root sheath; the layers of the inner root sheath include the companion layer, Henle's layer, Huxley's layer and the inner root sheath cuticle[MP]." [Keratin.com:http\://www.keratin.com/, MP:0010685]
synonym: "hair follicle inner root sheath" EXACT [MP:0010685]
synonym: "inner root sheath" RELATED [BTO:0003971]
synonym: "inner root sheath of hair follicle" EXACT [FMA:70935]
xref: BTO:0003971
xref: FMA:70935
xref: MA:0000779
is_a: UBERON:0005933 ! hair root sheath
[Term]
id: UBERON:0005942
name: hair outer root sheath
def: "It surrounds the hair follicle like a sleeve all the way to the bulb. The outer root sheath is essentially a stratified epithelium that is contiguous with the epidermis." [Keratin.com:http\://www.keratin.com/]
synonym: "hair follicle outer root sheath" EXACT [BTO:0003969]
synonym: "ORS" RELATED [BTO:0003969]
synonym: "outer root sheath" RELATED [BTO:0003969]
synonym: "outer root sheath of hair follicle" EXACT [FMA:70943]
xref: BTO:0003969
xref: FMA:70943
xref: MA:0000780
is_a: UBERON:0005933 ! hair root sheath
[Term]
id: UBERON:0005943
name: hair root sheath matrix
xref: MA:0000781
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0005933 ! hair root sheath
[Term]
id: UBERON:0005944
name: axial skeleton
def: "Subdivision of skeleton which consists of skull, set of all vertebrae, set of all ribs and sternum. Examples: There is only one axial skeleton." [FMA:71221, Wikipedia:Axial_skeleton]
subset: uberon_slim
xref: FMA:71221
xref: ncithesaurus:Axial_Skeleton
is_a: UBERON:0000075 ! subdivision of skeletal system
[Term]
id: UBERON:0005945
name: neurocranial trabecula
synonym: "neurocranial trabeculae" EXACT PLURAL [ZFA:0001321]
synonym: "trabecula" BROAD SENSU [ZFA:0001321]
synonym: "trabecular cartilage" BROAD [ZFA:0001321]
xref: ZFA:0001321
is_a: UBERON:0000440 ! trabecula
is_a: UBERON:0003932 ! chondrocranium cartilage
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0003112 ! olfactory region
[Term]
id: UBERON:0005946
name: outflow tract of atrium
synonym: "outflow part of atrium" EXACT [FMA:14141]
xref: FMA:14141
is_a: UBERON:0004145 ! implied link automatically realized ! outflow tract
relationship: part_of UBERON:0002081
intersection_of: UBERON:0004145 ! outflow tract
intersection_of: part_of UBERON:0002081 ! cardiac atrium
relationship: continuous_with UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0005953
name: outflow part of right ventricle
def: "Outflow part of ventricle which is continuous with the pulmonary trunk[FNA]. The right ventricular outflow tract (RVOT) is an infundibular extension of the ventricular cavity which connects to the pulmonary artery[WP]." [FMA:7216]
synonym: "conus arteriosus (infundibulum)" EXACT [FMA:7216]
synonym: "infundibulum of right ventricle" EXACT [FMA:7216]
synonym: "outflow tract of right ventricle" EXACT [FMA:7216]
synonym: "pulmonary conus" EXACT [FMA:7216]
synonym: "RVOT" EXACT []
xref: FMA:7216
is_a: UBERON:0005337 ! implied link automatically realized ! outflow tract of ventricle
relationship: part_of UBERON:0002080
intersection_of: UBERON:0005337 ! outflow tract of ventricle
intersection_of: part_of UBERON:0002080 ! right ventricle
relationship: continuous_with UBERON:0002333 ! pulmonary trunk
[Term]
id: UBERON:0005956
name: outflow part of left ventricle
def: "Outflow part of ventricle which is continuous with the aorta[FMA]. The left ventricular outflow tract (LVOT), which connects to the aorta, is nearly indistinguishable from the rest of the ventricle[WP]." [FMA:9473]
synonym: "aortic vestibule" EXACT [FMA:9473]
synonym: "left ventricular outflow" EXACT [FMA:9473]
synonym: "LVOT" EXACT []
synonym: "outflow tract of left ventricle" EXACT [FMA:9473]
xref: FMA:9473
is_a: UBERON:0005337 ! implied link automatically realized ! outflow tract of ventricle
relationship: part_of UBERON:0002084
intersection_of: UBERON:0005337 ! outflow tract of ventricle
intersection_of: part_of UBERON:0002084 ! left ventricle
[Term]
id: UBERON:0005965
name: outflow part of right atrium
def: "Outflow part of atrium which consists of wall and cavity of the outflow part of right atrium and the tricuspid valve." [FMA:9550]
synonym: "main part of right atrium" EXACT [FMA:9550]
synonym: "outflow tract of right atrium" EXACT [FMA:9550]
xref: FMA:9550
is_a: UBERON:0005946 ! implied link automatically realized ! outflow tract of atrium
relationship: part_of UBERON:0002078
intersection_of: UBERON:0005946 ! outflow tract of atrium
intersection_of: part_of UBERON:0002078 ! right atrium
[Term]
id: UBERON:0005966
name: outflow part of left atrium
synonym: "main part of left atrium" EXACT [FMA:9551]
synonym: "outflow tract of left atrium" EXACT [FMA:9551]
xref: FMA:9551
is_a: UBERON:0005946 ! implied link automatically realized ! outflow tract of atrium
relationship: part_of UBERON:0002079
intersection_of: UBERON:0005946 ! outflow tract of atrium
intersection_of: part_of UBERON:0002079 ! left atrium
[Term]
id: UBERON:0005967
name: conotruncal ridge
def: "One of of the pair of spiral mesenchymal swellings in the primordial ventricular outflow tract, that eventually fuse to form the conotruncal septum, dividing the subvalvular outflow tract and contributing to the membranous interventricular septum[MP]" [MP:0010585, PMID:8823298]
synonym: "aortico-pulmonary spiral ridges" EXACT [MP:0010585]
synonym: "bulbar ridge" EXACT [MP:0010585]
synonym: "conotruncal cushion" EXACT [MP:0010585]
synonym: "endocardial ridge" EXACT [MP:0010585]
synonym: "outflow tract cushion" EXACT [MP:0010585]
synonym: "outflow tract endocardial cushion" EXACT [MP:0010585]
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0003313 ! implied link automatically realized ! mesenchyme of embryo
relationship: part_of UBERON:0004706 ! bulbus cordis
relationship: part_of UBERON:0005337 ! outflow tract of ventricle
[Term]
id: UBERON:0005968
name: infundibulum of hair follicle
synonym: "dermal piliary canal" EXACT [FMA:70722]
synonym: "hair follicle infundibulum" EXACT [FMA:70722]
xref: FMA:70722
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
disjoint_from: UBERON:0003014 ! infundibulum of hypophysis
relationship: part_of UBERON:0002073 ! hair follicle
[Term]
id: UBERON:0005969
name: reticulum trabeculare
def: "The trabecular meshwork is an area of tissue in the eye located around the base of the cornea, near the ciliary body, and is responsible for draining the aqueous humor from the eye via the anterior chamber (the chamber on the front of the eye covered by the cornea). The tissue is spongy and lined by trabeculocytes; it allows fluid to drain into a set of tubes called Schlemm's canal flowing into the blood system." [Wikipedia:Trabecular_meshwork]
synonym: "cribiform ligament" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "Hueck's ligament" RELATED [BTO:0001605]
synonym: "iridis" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "ligamentum peactin-tum iridis" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "ligamentum pectinatum" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "ligamentum pectinatum anguli iridocornealis" RELATED [BTO:0001605]
synonym: "ligamentum pectinatum iridis" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "pectinate ligament" RELATED [BTO:0001605]
synonym: "pectinate ligament of iris" RELATED [BTO:0001605]
synonym: "scleral trabeculae" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "scleral trabecular" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "scleral trabecule" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "scribiform ligament" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "trabecular mesh" RELATED [Wikipedia:Trabecular_meshwork]
synonym: "trabecular meshwork" RELATED [BTO:0001605]
synonym: "trabecular meshwork of the eye" RELATED [Wikipedia:Trabecular_meshwork]
xref: BTO:0001605
xref: GAID:897
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0005970
name: brain commissure
is_a: UBERON:0001020 ! implied link automatically realized ! commissure
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0000955
intersection_of: UBERON:0001020 ! commissure
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0005971
name: amniotic fold
def: "the folded edge of the amnion where it rises over and finally encloses the embryo[TFD]." [http://medical-dictionary.thefreedictionary.com/amniotic+fold]
xref: EMAPA:16076
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0005972
name: tunnel of Corti
def: "A triangular, fluid-filled space normally found between the inner and outer rows of supporting pillar cells in the organ of Corti." [MP:0003151]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002227 ! spiral organ of cochlea
[Term]
id: UBERON:0005973
name: blood-inner ear barrier
def: "the function of the group of barriers and transport systems which regulate the transport of various substances from blood to inner ear tissue and maintain the microhomeostasis and functional integrity of the inner ear; the endothelial cells of the inner ear blood capillaries, linked to each other by tight junctions, represent the main component of the blood-inner ear barrier" [MP:0004999]
is_a: UBERON:0001981 ! blood vessel
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0005974
name: posterior cerebellomedullary cistern
def: "A space between the cerebellum and the dorsal surface of the medulla." [MP:0009036]
xref: FMA:83721
is_a: UBERON:0004049 ! cerebellomedullary cistern
[Term]
id: UBERON:0005975
name: hair follicle bulge
def: "the area located in the bottom of the permanent portion of a resting (telogen) hair follicle where the cells of the external root sheath of the hair follicle are contiguous with the basal layer of the epidermis; this portion of the follicle is involved in the generation of a new hair at the onset of the hair growth cycle (anagen) and contains the hair follicle stem cells" [MP:0009759]
xref: BTO:0004904
xref: FMA:70735
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002073 ! hair follicle
[Term]
id: UBERON:0005976
name: ansiform lobule crus I
def: "." [MP:0010002]
comment: TODO - check
synonym: "crus II of the ansiform lobule (HVII)" EXACT [NIF_GrossAnatomy:nlx_anat_20081209]
synonym: "hemispheric lobule viibi" EXACT [NIF_GrossAnatomy:nlx_anat_20081209]
synonym: "lobulus ansiform crus II" EXACT [NIF_GrossAnatomy:nlx_anat_20081209]
synonym: "lobulus semilunaris inferior" EXACT [NIF_GrossAnatomy:nlx_anat_20081209]
synonym: "superior semilunar lobule " EXACT [FMA:72524]
xref: FMA:72524
xref: NIF_GrossAnatomy:nlx_anat_20081209
is_a: UBERON:0005348 ! ansiform lobule
[Term]
id: UBERON:0005977
name: ansiform lobule crus II
def: "." [MP:0010003]
comment: TODO - check
synonym: "crus I of the ansiform lobule (HVII)" EXACT [NIF_GrossAnatomy:nlx_anat_20081208]
synonym: "hemispheric lobule viia" EXACT [NIF_GrossAnatomy:nlx_anat_20081208]
synonym: "inferior semilunar lobule" EXACT [FMA:72525]
synonym: "lobulus ansiform crus I" EXACT [NIF_GrossAnatomy:nlx_anat_20081208]
synonym: "lobulus semilunaris superior" EXACT [NIF_GrossAnatomy:nlx_anat_20081208]
xref: FMA:72525
xref: NIF_GrossAnatomy:nlx_anat_20081208
is_a: UBERON:0005348 ! ansiform lobule
[Term]
id: UBERON:0005978
name: olfactory bulb outer nerve layer
def: "the outermost layer of the olfactory bulb; consists primarily of olfactory afferent axons and ensheathing glia" [MP:0010057]
is_a: UBERON:0004001 ! olfactory bulb layer
relationship: part_of UBERON:0002264 ! olfactory bulb
[Term]
id: UBERON:0005979
name: crista terminalis
def: "the vertical crest of the interior wall of the right atrium that lies to the right of the sinus of the vena cava and separates this from the remainder of the right atrium" [MP:0010495]
xref: FMA:9236
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002078 ! right atrium
[Term]
id: UBERON:0005980
name: pectinate muscle
def: "the prominent ridges of atrial myocardium located on the inner surface of most of the right atrium and both the right and left auricular regions" [MP:0010496]
xref: FMA:12226
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002302 ! myocardium of atrium
[Term]
id: UBERON:0005981
name: vena cava sinus
def: "the portion of the cavity of the right atrium of the heart that receives the blood from the vena cavae and is separated from the rest of the atrium by the crista terminalis" [MP:0010497]
synonym: "cavity of inflow part of right atrium" EXACT [FMA:13246]
synonym: "posterior right atrial cavity" EXACT [FMA:13246]
synonym: "sinus venarum cavarum" EXACT [FMA:13246]
xref: FMA:13246
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002078 ! right atrium
[Term]
id: UBERON:0005982
name: Bachmann's bundle
def: "the impulse conduction tract that originates in the sinoatrial node and transmits signal to the left atrium" [MP:0010517]
synonym: "anterior interatrial band" EXACT [UBERON:gg]
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0005983
name: heart layer
def: "the laminar structure of the heart" [MP:0010545]
is_a: UBERON:0004923 ! organ component layer
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0005984
name: subendocardium layer
def: "the layer of loose fibrous tissue located between the endocardium and myocardium which contains the nerves and the impulse-conducting system (Purkinje fibers) of the heart" [MP:0010546]
is_a: UBERON:0005983 ! heart layer
[Term]
id: UBERON:0005985
name: coronary vessel
def: "any of the arteries or veins that supply blood to the heart or return blood from the heart muscles to the circulation" [MP:0010551]
comment: TODO - change relation from part_of
is_a: UBERON:0000055 ! implied link automatically realized ! vessel
relationship: part_of UBERON:0000948
intersection_of: UBERON:0000055 ! vessel
intersection_of: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0005986
name: left posterior bundle
def: "the left branch of the atrioventricular bundle that separates at the bundle of His, descends the septal wall of the left ventricle and connects to the terminal Purkinje fiber" [MP:0010566]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: in_left_side_of UBERON:0002353 ! atrioventricular bundle
[Term]
id: UBERON:0005987
name: right bundle
def: "the right branch of the atrioventricular bundle that separates just below the bundle of His, descends the septal wall of the right ventricle and connects to the terminal Purkinje fibers" [MP:0010567]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: in_right_side_of UBERON:0002353 ! atrioventricular bundle
[Term]
id: UBERON:0005988
name: atrium myocardial trabecula
def: "the supporting bundles of muscular fibers lining the walls of the atria" [MP:0010581]
synonym: "atrial trabecula" EXACT []
synonym: "trabecula of atrium" EXACT []
is_a: UBERON:0000440 ! trabecula
relationship: part_of UBERON:0002302 ! myocardium of atrium
[Term]
id: UBERON:0005989
name: atrioventricular septum
def: "the wall of the heart that separates the right atrium and left ventricle; and is located just above the septal cusp of the tricuspid valve" [MP:0010592]
xref: FMA:7136
is_a: UBERON:0002099 ! implied link automatically realized ! cardiac septum
relationship: adjacent_to UBERON:0002078
relationship: adjacent_to UBERON:0002084
intersection_of: UBERON:0002099 ! cardiac septum
intersection_of: adjacent_to UBERON:0002078 ! right atrium
intersection_of: adjacent_to UBERON:0002084 ! left ventricle
[Term]
id: UBERON:0005990
name: aortic valve cusp
def: "the three fibrous triangular components and associated flap of the aortic valve" [MP:0010595]
synonym: "cusp of aortic valve" EXACT [FMA:7251]
xref: FMA:7251
is_a: UBERON:0006009 ! cusp of cardiac valve
relationship: part_of UBERON:0002137 ! aortic valve
[Term]
id: UBERON:0005991
name: aortic valve anulus
def: "the fibrous ring of the aortic valve that attaches the cusps of aortic valve to the wall of left ventricle, and which consists of portions of the fibrous scallops of the posterior, right anterior and left anterior cusps" [MP:0010598]
xref: FMA:9502
is_a: UBERON:0006008 ! fibrous ring of heart
relationship: part_of UBERON:0002137 ! aortic valve
[Term]
id: UBERON:0005992
name: pulmonary valve cusp
def: "the three fibrous triangular components and associated flap of the pulmonary valve" [MP:0010602]
xref: FMA:7248
is_a: UBERON:0006009 ! cusp of cardiac valve
relationship: part_of UBERON:0002146 ! pulmonary valve
[Term]
id: UBERON:0005993
name: pulmonary valve anulus
def: "the fibrous ring of the pulmonary valve that attaches the cusps of pulmonary valve to the wall of right ventricle, and which consists of portions of the fibrous scallops of the anterior, right posterior and left posterior cusps" [MP:0010606]
xref: FMA:9503
is_a: UBERON:0006008 ! fibrous ring of heart
relationship: part_of UBERON:0002146 ! pulmonary valve
[Term]
id: UBERON:0005994
name: chordae tendineae
def: "the tendinous strands that connect the papillary muscles on the wall of the ventricles to the leaflets of the atrioventricular valves; the chordae tendineae serve to prevent the AV valves from prolapsing back into the atria" [MP:0010608, Wikipedia:Chordae_tendineae]
xref: GAID:564
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002133 ! atrioventricular valve
[Term]
id: UBERON:0005995
name: mitral valve anulus
def: "the fibrous ring of the mitral valve that attaches the cusps of mitral valve to the heart, and which consists of portions of the fibrous scallops of the anterior and posterior cusps" [MP:0010613]
xref: FMA:9498
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0006008 ! fibrous ring of heart
relationship: part_of UBERON:0002135 ! mitral valve
[Term]
id: UBERON:0005996
name: mitral valve cusp
def: "the two fibrous components and associated flaps of the mitral valve" [MP:0010614]
comment: TODO - add generic parent
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0006009 ! cusp of cardiac valve
relationship: part_of UBERON:0002135 ! mitral valve
[Term]
id: UBERON:0005997
name: tricuspid valve anulus
def: "the fibrous ring of the tricuspid valve that attaches the cusps of tricuspid valve to the heart, and which consists of portions of the fibrous scallops of the anterior cusp (infundibular cusp), the posterior cusp (marginal cusp), and the septal cusp (medial cusp)" [MP:0010621]
xref: FMA:9500
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0006008 ! fibrous ring of heart
relationship: part_of UBERON:0002134 ! tricuspid valve
[Term]
id: UBERON:0005998
name: tricuspid valve cusp
def: "the three fibrous triangular components and associated flaps of the tricuspid valve" [MP:0010622]
comment: TODO - check
synonym: "septal leaflet of tricuspid valve" EXACT [FMA:7240]
xref: FMA:7240
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0006009 ! cusp of cardiac valve
relationship: part_of UBERON:0002134 ! tricuspid valve
[Term]
id: UBERON:0005999
name: aorticopulmonary septum
def: "the spiral septum that separates the truncus arteriosus into a ventral pulmonary trunk and the dorsal aorta" [MP:0010650]
is_a: UBERON:0002099 ! implied link automatically realized ! cardiac septum
relationship: adjacent_to UBERON:0002333
relationship: adjacent_to UBERON:0005805
intersection_of: UBERON:0002099 ! cardiac septum
intersection_of: adjacent_to UBERON:0002333 ! pulmonary trunk
intersection_of: adjacent_to UBERON:0005805 ! dorsal aorta
[Term]
id: UBERON:0006001
name: intersomitic artery
def: "the small branching sprouts of the dorsal aorta that grow across the medial surface of the somite, turn right angles to grow over that surface and then fuse with other sprouts and form the vertebral arteries adjacent to the neural tube; the intersomitic arteries supply the body wall and persist in the adult as the posterior intercostal, subcostal and the lumbar arteries" [MP:0010662]
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
relationship: part_of UBERON:0005805 ! dorsal aorta
[Term]
id: UBERON:0006002
name: vitelline artery
def: "the paired arteries that carry blood to the yolk sac from the dorsal aorta; the vitelline arteries give rise to the celiac artery, superior mesenteric artery, and inferior mesenteric artery in the adult" [MP:0010664]
xref: EMAPA:16207
is_a: UBERON:0001637 ! implied link automatically realized ! artery
relationship: continuous_with UBERON:0001040
relationship: continuous_with UBERON:0005805
intersection_of: UBERON:0001637 ! artery
intersection_of: continuous_with UBERON:0001040 ! yolk sac
intersection_of: continuous_with UBERON:0005805 ! dorsal aorta
[Term]
id: UBERON:0006003
name: skin adnexa
def: "the tissue or structures associated with or embedded in the skin such as hair and hair follicles, sweat glands, sebaceous glands and claws or nails" [MP:0010678]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0002416 ! integumental system
[Term]
id: UBERON:0006004
name: hair follicle matrix region
def: "the bulb region adjacent to the dermal papilla that contains rapidly proliferating matrix cells that give rise to the various cell lineages of the hair shaft and inner root sheath" [MP:0010686]
synonym: "germinal matrix of hair bulb" EXACT [FMA:70772]
synonym: "lower part of bulb of hair follicle" EXACT [FMA:70772]
synonym: "lower zone of bulb of hair follicle" EXACT [FMA:70772]
xref: FMA:70772
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0005932 ! bulb of hair follicle
[Term]
id: UBERON:0006005
name: hair follicle isthmus
def: "the middle part of the hair follicle that extends from the sebaceous duct to the bulge" [MP:0010694]
xref: FMA:70723
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002073 ! hair follicle
[Term]
id: UBERON:0006006
name: metoptic pilar
def: "posterior border of the optic nerve foramen." [MP:0010705]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
relationship: part_of UBERON:0005745 ! optic canal
[Term]
id: UBERON:0006007
name: pre-Botzinger complex
def: "the group of interneurons within the medulla oblongata's ventral respiratory group that are important for the generation of ventilatory (inspiratory) rhythmogenesis" [MP:0010745]
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0000011 ! parasympathetic nervous system
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0006008
name: fibrous ring of heart
def: "The right and left fibrous rings of heart (anulus fibrosus cordis) surround the atrioventricular and arterial orifices, and are stronger upon the left than on the right side of the heart. The right fibrous ring is known as the anulus fibrosus dexter cordis, and the left is known as the anulus fibrosus sinister cordis. The atrioventricular rings serve for the attachment of the muscular fibers of the atria and ventricles, and for the attachment of the bicuspid and tricuspid valves. The left atrioventricular ring is closely connected, by its right margin, with the aortic arterial ring; between these and the right atrioventricular ring is a triangular mass of fibrous tissue, the trigonum fibrosum, which represents the os cordis seen in the heart of some of the larger animals, as the ox and elephant. Lastly, there is the tendinous band, already referred to, the posterior surface of the conus arteriosus. The fibrous rings surrounding the arterial orifices serve for the attachment of the great vessels and semilunar valves, they are known as The aortic annulus. Each ring receives, by its ventricular margin, the attachment of some of the muscular fibers of the ventricles; its opposite margin presents three deep semicircular notches, to which the middle coat of the artery is firmly fixed. The attachment of the artery to its fibrous ring is strengthened by the external coat and serous membrane externally, and by the endocardium internally. From the margins of the semicircular notches the fibrous structure of the ring is continued into the segments of the valves. The middle coat of the artery in this situation is thin, and the vessel is dilated to form the sinuses of the aorta and pulmonary artery." [Wikipedia:Fibrous_rings_of_heart]
synonym: "annulus fibrosus cordis" RELATED [Wikipedia:Fibrous_rings_of_heart]
synonym: "anulus fibrosus cordis" RELATED [Wikipedia:Fibrous_rings_of_heart]
synonym: "anulus fibrosus of heart" EXACT [FMA:9497]
synonym: "aortic annulus" RELATED [Wikipedia:Fibrous_rings_of_heart]
synonym: "fibrous ring of heart" RELATED [Wikipedia:Fibrous_rings_of_heart]
xref: FMA:9497
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0006009
name: cusp of cardiac valve
def: "Organ component which has as its parts the cusp proper, lunule and nodule of semilunar valvule[FMA]. The cusps of the heart valves serve to seal the heart valves when closed. There are three cusps for each valve except for the mitral valve, which has only two (hence its alternate name, \"bicuspid valve\"). \"Nodules\" are located at the tip of the valve, to form a tighter seal[WP]." [FMA:7232, Wikipedia:Cusps_of_heart_valves]
synonym: "cardiac valve cusp" EXACT [FMA:7232]
synonym: "cardiac valvular cusp" EXACT [FMA:7232]
synonym: "cardiac valvule" EXACT [FMA:7232]
synonym: "cardial valve cusp" EXACT []
synonym: "semilunar valvule" EXACT [FMA:7232]
xref: FMA:7232
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000946 ! cardial valve
[Term]
id: UBERON:0006010
name: hyaloid canal
def: "Hyaloid canal is a small transparent canal running through the vitreous body from the optical nerve disc to the lens; in foetus it contains a prolongation of the central artery of the retina, the hyaloid artery. Other names: Cloquet's canal, Stilling's canal. The function of the canal is to provide an adjustable reservoir of mobile liquid which may be easily and rapidly displaced backwards in positive accommodation, forwards in negative accommodation[WP]. a passage running from in front of the optic disk to the lens of the eye; in the fetus, it transmits the hyaloid artery[TFD]." [http://medical-dictionary.thefreedictionary.com/Hyaloid+canal, Wikipedia:Hyaloid_canal]
comment: in FMA, this is_a FMA:67388 portion of vitreous humor
synonym: "canal of cloquet" EXACT [FMA:58837]
synonym: "cloquet's canal" EXACT [FMA:58837]
synonym: "stilling's canal" EXACT [FMA:58837]
xref: FMA:58837
is_a: UBERON:0004111 ! anatomical conduit
relationship: part_of UBERON:0001798 ! vitreous body
[Term]
id: UBERON:0006011
name: hyaloid vein
def: "Vein internal to the eye." [ZFIN:ZDB-PUB-010205-5]
synonym: "hyaloid veins" EXACT PLURAL [ZFA:0005047]
xref: ZFA:0005047
is_a: UBERON:0001638 ! vein
is_a: UBERON:0005492 ! hyaloid vessel
[Term]
id: UBERON:0006012
name: interdigital region
synonym: "interdigit" RELATED []
synonym: "interdigit region" EXACT []
is_a: UBERON:0000061 ! anatomical structure
relationship: adjacent_to UBERON:0002544 {cardinality="2"} ! digit
relationship: part_of UBERON:0002470 ! autopod
[Term]
id: UBERON:0006013
name: hand interdigital region
synonym: "hand interdigit region" EXACT [MA:0000627]
xref: HOG:0000991
xref: MA:0000627
is_a: UBERON:0006012 ! implied link automatically realized ! interdigital region
relationship: part_of UBERON:0002398
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: part_of UBERON:0002398 ! hand
relationship: adjacent_to UBERON:0002389 {cardinality="2"} ! finger
[Term]
id: UBERON:0006014
name: foot interdigital region
synonym: "foot interdigit region" EXACT [MA:0000651]
xref: HOG:0000992
xref: MA:0000651
is_a: UBERON:0006012 ! implied link automatically realized ! interdigital region
relationship: part_of UBERON:0002387
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: part_of UBERON:0002387 ! foot
relationship: adjacent_to UBERON:0001466 {cardinality="2"} ! toe
[Term]
id: UBERON:0006015
name: webbed interdigital region
def: "Interdigital webbing is the presence of membranes of skin between the digits. Normally in mammals, webbing is present in the embryo but resorbed later in development, but in various mammal species it occasionally persists in adulthood.[1] In humans, it can be found in those suffering from LEOPARD syndrome and from Aarskog-Scott syndrome. Webbing between the digits of the hindfoot is also present in several mammals that spend part of their time in the water.[3] Webbing accommodates movement in the water[WP]." [Wikipedia:Interdigital_webbing]
synonym: "interdigital webbing" EXACT []
is_a: UBERON:0006012 ! interdigital region
[Term]
id: UBERON:0006016
name: interdigital region between digits 1 and 2
is_a: UBERON:0006012 ! interdigital region
relationship: adjacent_to UBERON:0006048
relationship: adjacent_to UBERON:0006049
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: adjacent_to UBERON:0006048 ! digit 1
intersection_of: adjacent_to UBERON:0006049 ! digit 2
relationship: part_of UBERON:0002470 ! autopod
[Term]
id: UBERON:0006019
name: interdigital region between digits 2 and 3
is_a: UBERON:0006012 ! interdigital region
relationship: adjacent_to UBERON:0006049
relationship: adjacent_to UBERON:0006050
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: adjacent_to UBERON:0006049 ! digit 2
intersection_of: adjacent_to UBERON:0006050 ! digit 3
relationship: part_of UBERON:0002470 ! autopod
[Term]
id: UBERON:0006022
name: interdigital region between digits 3 and 4
is_a: UBERON:0006012 ! interdigital region
relationship: adjacent_to UBERON:0006050
relationship: adjacent_to UBERON:0006051
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: adjacent_to UBERON:0006050 ! digit 3
intersection_of: adjacent_to UBERON:0006051 ! digit 4
relationship: part_of UBERON:0002470 ! autopod
[Term]
id: UBERON:0006025
name: interdigital region between digits 4 and 5
is_a: UBERON:0006012 ! interdigital region
relationship: adjacent_to UBERON:0006051
relationship: adjacent_to UBERON:0006052
intersection_of: UBERON:0006012 ! interdigital region
intersection_of: adjacent_to UBERON:0006051 ! digit 4
intersection_of: adjacent_to UBERON:0006052 ! digit 5
relationship: part_of UBERON:0002470 ! autopod
[Term]
id: UBERON:0006026
name: interdigital region between fingers 1 and 2
xref: EHDAA:6298
xref: EHDAA2:0000844
xref: EMAPA:17445
is_a: UBERON:0006013 ! implied link automatically realized ! hand interdigital region
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0006029
name: interdigital region between fingers 2 and 3
xref: EHDAA:6304
xref: EHDAA2:0000847
xref: EMAPA:17448
is_a: UBERON:0006013 ! implied link automatically realized ! hand interdigital region
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0006032
name: interdigital region between fingers 3 and 4
xref: EHDAA:6310
xref: EHDAA2:0000850
xref: EMAPA:17451
is_a: UBERON:0006013 ! implied link automatically realized ! hand interdigital region
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0006035
name: interdigital region between fingers 4 and 5
xref: EHDAA:6316
xref: EHDAA2:0000853
xref: EMAPA:17454
is_a: UBERON:0006013 ! implied link automatically realized ! hand interdigital region
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0006038
name: interdigital region between toes 1 and 2
xref: EHDAA:6148
xref: EHDAA2:0000856
xref: EMAPA:17476
is_a: UBERON:0006014 ! implied link automatically realized ! foot interdigital region
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0006041
name: interdigital region between toes 2 and 3
xref: EHDAA:6154
xref: EHDAA2:0000859
xref: EMAPA:17479
is_a: UBERON:0006014 ! implied link automatically realized ! foot interdigital region
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0006044
name: interdigital region between toes 3 and 4
xref: EHDAA:6160
xref: EHDAA2:0000862
xref: EMAPA:17482
is_a: UBERON:0006014 ! implied link automatically realized ! foot interdigital region
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0006047
name: interdigital region between toes 4 and 5
xref: EHDAA:6166
xref: EHDAA2:0000865
xref: EMAPA:17485
is_a: UBERON:0006014 ! implied link automatically realized ! foot interdigital region
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0006048
name: digit 1
comment: comment: This class represents all instances of the 1st digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
is_a: UBERON:0002544 ! digit
[Term]
id: UBERON:0006049
name: digit 2
comment: comment: This class represents all instances of the 2nd digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
is_a: UBERON:0002544 ! digit
[Term]
id: UBERON:0006050
name: digit 3
comment: comment: This class represents all instances of the 3rd digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
is_a: UBERON:0002544 ! digit
[Term]
id: UBERON:0006051
name: digit 4
comment: comment: This class represents all instances of the 4th digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
is_a: UBERON:0002544 ! digit
[Term]
id: UBERON:0006052
name: digit 5
comment: comment: This class represents all instances of the 5th digit of the in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
is_a: UBERON:0002544 ! digit
[Term]
id: UBERON:0006054
name: surface of occiput
def: "The occiput is the anatomical term for the posterior (back) portion of the head." [Wikipedia:Occiput]
synonym: "occiput" RELATED [FMA:46479]
synonym: "occiput surface" EXACT [FMA:46479]
synonym: "regio occipitalis (capitis)" EXACT [FMA:46479]
xref: FMA:46479
is_a: UBERON:0006056 ! posterior surface of head
[Term]
id: UBERON:0006056
name: posterior surface of head
is_a: UBERON:0000015 ! anatomical boundary
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0006057
name: multi-segment region
is_a: UBERON:0000061 ! anatomical structure
relationship: has_part UBERON:0000914 ! organismal segment
[Term]
id: UBERON:0006058
name: multi-limb segment region
is_a: UBERON:0006057 ! multi-segment region
relationship: has_part UBERON:0002529 ! limb segment
[Term]
id: UBERON:0006059
name: falx cerebri
def: "The falx cerebri, also known as the cerebral falx, so named from its sickle-like form, is a strong, arched fold of dura mater which descends vertically in the longitudinal fissure between the cerebral hemispheres. It is narrow in front, where it is attached to the crista galli of the ethmoid; and broad behind, where it is connected with the upper surface of the tentorium cerebelli. Its upper margin is convex, and attached to the inner surface of the skull in the middle line, as far back as the internal occipital protuberance; it contains the superior sagittal sinus. Its lower margin is free and concave, and contains the inferior sagittal sinus. The falx cerebri is known to calcify with age." [Wikipedia:Falx_cerebri]
synonym: "cerebral falx" EXACT [FMA:83967]
xref: EMAPA:18551
xref: FMA:83967
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0004120 ! implied link automatically realized ! mesoderm-derived structure
is_a: UBERON:0004121 ! implied link automatically realized ! ectoderm-derived structure
relationship: part_of UBERON:0002363 ! dura mater
[Term]
id: UBERON:0006060
name: conotruncus
def: "The distal portion of Bulbus cordis that forms an outflow channel and gives rise to the proximal conus cordis." [UBERON:gg]
synonym: "rostral half of bulbus cordis" RELATED [EMAPA:16221]
xref: EMAPA:16221
xref: EMAPA:16338
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0004706 ! bulbus cordis
[Typedef]
id: adjacent_to
name: adjacent_to
xref: OBO_REL:adjacent_to
[Typedef]
id: anterior_to
name: anterior_to
is_transitive: true
created_by: cjm
creation_date: 2009-07-31T02:15:46Z
[Typedef]
id: attached_to
name: attached_to
xref: FMA:85882
[Typedef]
id: bearer_of
name: bearer of
namespace: BFO
xref: BFO:0000053
[Typedef]
id: bounds
name: bounds
[Typedef]
id: branch_of
name: branch_of
comment: we need to check if FMA branch_of implies part_of. the relation we intend to use here should - for example, see vestibulocochlear nerve
is_a: part_of ! part_of
[Typedef]
id: capable_of
name: capable_of
namespace: CL
def: "A relation between a material entity (such as a cell) and a process. This is a shortcut relation, translation rule for which is: capable_of P <-> bearer_of (some realized_by only P). Example: osteoclast capable of bone resorption." [GOC:cjm]
comment: At the CL meeting we discussed a separate case, capable_of P <-> bearer_of (some realized_by only (P or part_of some P)). We need to look at specific cases.
expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000053 some (http://purl.obolibrary.org/obo/BFO_0000054 only ?Y)" []
is_class_level: true
[Typedef]
id: capable_of_regulation_of
name: capable_of_regulation_of
holds_over_chain: capable_of regulates
[Typedef]
id: coincides_with
name: coincides_with
def: "Relation between occurrents, shares start and end boundaries." [Allen:starts, UBERON:cjm]
synonym: "coincides_with" EXACT []
is_a: finishes ! finishes
is_a: starts ! starts
intersection_of: finishes ! finishes
intersection_of: starts ! starts
[Typedef]
id: connects
name: connects
[Typedef]
id: continuous_with
name: continuous_with
xref: FMA:85972
[Typedef]
id: develops_from
name: develops_from
is_transitive: true
holds_over_chain: part_of develops_from
transitive_over: part_of ! part_of
[Typedef]
id: develops_into
name: develops_into
inverse_of: develops_from ! develops_from
[Typedef]
id: directly_preceded_by
name: directly_preceded_by
holds_over_chain: has_start end_of
is_a: preceded_by ! preceded_by
[Typedef]
id: distal_to
name: distal_to
[Typedef]
id: encloses
name: encloses
def: "x encloses y iff the convex hull formed by x contains all or the majority of y." [UBERON:cjm]
[Typedef]
id: end_of
name: end_of
[Typedef]
id: existence_ends_at
name: existence_ends_at
def: "instance: c existence_ends_at e iff c exists_at e and not ( exists e2 : c exists_at e2 and e before e2). Type: all Cc, exists Ee, c existence_ends_at e." [UBERON:cjm]
[Typedef]
id: existence_ends_before
name: existence_ends_before
def: "Relation between continuant c and occurrent s, such that every instance of c ceases to exist before s." [UBERON:cjm]
holds_over_chain: existence_ends_during precedes
[Typedef]
id: existence_ends_during
name: existence_ends_during
def: "Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely." [UBERON:cjm]
is_a: existence_starts_or_ends_during ! implied link automatically realized ! existence_starts_or_ends_during
transitive_over: part_of ! part_of
[Typedef]
id: existence_ends_with
name: existence_ends_with
def: "Relation between continuant and occurrent, such that c ceases to exist at the end of p." [UBERON:cjm]
[Typedef]
id: existence_starts_after
name: existence_starts_after
def: "Relation between continuant c and occurrent s, such that every instance of c comes into existing after some s has completed." [UBERON:cjm]
holds_over_chain: existence_starts_during preceded_by
disjoint_from: existence_starts_during ! existence_starts_during
[Typedef]
id: existence_starts_and_ends_during
name: existence_starts_and_ends_during
is_a: existence_ends_during ! existence_ends_during
is_a: existence_starts_during ! existence_starts_during
intersection_of: existence_ends_during ! existence_ends_during
intersection_of: existence_starts_during ! existence_starts_during
[Typedef]
id: existence_starts_at
name: existence_starts_at
def: "instance: c existence_starts_at e iff c exists_at e and not ( exists e2 : c exists_at e2 and e2 before e). Type: all Cc, exists Ee, c existence_starts_at e." [UBERON:cjm]
[Typedef]
id: existence_starts_during
name: existence_starts_during
def: "Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s." [UBERON:cjm]
is_a: existence_starts_or_ends_during ! implied link automatically realized ! existence_starts_or_ends_during
transitive_over: part_of ! part_of
[Typedef]
id: existence_starts_or_ends_during
name: existence_starts_or_ends_during
union_of: existence_ends_during ! existence_ends_during
union_of: existence_starts_during ! existence_starts_during
[Typedef]
id: existence_starts_with
name: existence_starts_with
def: "Relation between continuant and occurrent, such that c comes into existence at the start of p." [UBERON:cjm]
holds_over_chain: existence_starts_at start_of
[Typedef]
id: exists_during
name: exists_during
[Typedef]
id: finishes
name: finishes
def: "Relation between occurrents, shares an end boundary with." [Allen:starts, UBERON:cjm, ZFS:finishes]
xref: ncithesaurus:Finish
is_a: part_of ! part_of
[Typedef]
id: has_end
name: has_end
[Typedef]
id: has_part
name: has part
xref: BFO:0000051
is_transitive: true
inverse_of: part_of ! part_of
[Typedef]
id: has_quality
name: has_quality
[Typedef]
id: has_start
name: has_start
[Typedef]
id: homologous_to
name: homologous_to
[Typedef]
id: in_distal_side_of
name: in_distal_side_of
def: "X distal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the distal portion." [BSPO:PATO_mtg_2009]
inverse_of: BSPO:0000121
[Typedef]
id: in_left_side_of
name: in_left_side_of
def: "X left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion." [BSPO:PATO_mtg_2009]
xref: BSPO:0000120
is_a: part_of ! part_of
inverse_of: BSPO:0000121
[Typedef]
id: in_proximal_side_of
name: in_proximal_side_of
def: "X proximal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the proximal portion." [BSPO:PATO_mtg_2009]
[Typedef]
id: in_right_side_of
name: in_right_side_of
def: "X right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion." [BSPO:PATO_mtg_2009]
xref: BSPO:0000121
is_a: part_of ! part_of
[Typedef]
id: induced_by
name: induced_by
def: "t1 induced_by t2 if there is a process of organ induction (GO:0001759) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor tissue type T to T', where T' develops_from T." [GO:0001759]
comment: sources for induced_by relationships in Uberon: Developmental Biology, Gilbert, 8th edition, figure 6.5(F)
[Typedef]
id: inheres_in_progenitor_of
name: inheres_in_progenitor_of
[Typedef]
id: location_of
name: location_of
created_by: cjm
creation_date: 2009-07-30T10:22:21Z
[Typedef]
id: never_in_taxon
name: never_in_taxon
is_class_level: true
[Typedef]
id: only_in_taxon
name: only_in_taxon
is_class_level: true
[Typedef]
id: output_of
name: output_of
[Typedef]
id: overlaps
name: overlaps
namespace: RO
def: "overlaps y <-> has_part some (part_of some y)" []
expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" []
[Typedef]
id: part_of
name: part_of
xref: BFO:0000050
is_reflexive: true
is_transitive: true
[Typedef]
id: participates_in
name: participates in
namespace: BFO
xref: BFO:0000056
[Typedef]
id: preceded_by
name: preceded_by
xref: OBO_REL:preceded_by
is_transitive: true
disjoint_from: part_of ! part_of
[Typedef]
id: precedes
name: precedes
xref: OBO_REL:precedes
is_transitive: true
inverse_of: preceded_by ! preceded_by
[Typedef]
id: proximal_to
name: proximal_to
[Typedef]
id: realized_by
name: realized by
namespace: BFO
xref: BFO:0000054
[Typedef]
id: regulates
name: regulates
[Typedef]
id: replaces
name: replaces
[Typedef]
id: secreted_by
name: secreted_by
[Typedef]
id: secretes
name: secretes
[Typedef]
id: separated_from_by
name: separated_from_by
[Typedef]
id: site_of
name: site_of
def: "C site_of P iff exists species S such that P occurs_in C for all members of S. Example: bursa of Fabricius site_of B-cell differentiation." [GOC:cjm]
[Typedef]
id: spatially_disjoint_from
name: spatially_disjoint_from
def: "A is spatially_disjoint_from B if they have no parts in common." [SO:cjm]
synonym: "non_overlapping_with" EXACT []
synonym: "shares_no_parts_with" EXACT []
expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 exactly 0 (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" []
is_class_level: true
is_metadata_tag: true
[Typedef]
id: start_of
name: start_of
[Typedef]
id: starts
name: starts
def: "Relation between occurrents, shares a start boundary with." [Allen:starts, UBERON:cjm, ZFS:starts]
holds_over_chain: has_start start_of
is_a: part_of ! part_of
[Typedef]
id: surrounded_by
name: surrounded_by
[Typedef]
id: surrounds
name: surrounds
xref: ncithesaurus:Surrounding
[Typedef]
id: systemic_part_of
name: systemic_part_of
comment: we use this in a weaker sense than mereological part_of - e.g. sense organ may be a systemic part of the nervous system, but it does not follow that the epithelium of the nose is part of the nervous system. systemic parts must at least share parts in common
is_a: overlaps ! overlaps
[Typedef]
id: transports
name: transports