format-version: 1.2
date: 10:02:2010 15:06
subsetdef: uberon_slim "Uberon slim"
synonymtypedef: PLURAL "plural term"
default-namespace: uberon
remark: cvs version $Revision: 1.79 $
treat-xrefs-as-equivalent: CARO
[Term]
id: UBERON:0000000
name: processual entity
def: "An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity." [span:ProcessualEntity]
disjoint_from: UBERON:0001062 ! anatomical entity
created_by: cjm
creation_date: 2009-04-09T05:51:24Z
[Term]
id: UBERON:0000002
name: cervix
def: "Lower, narrow portion of the uterus where it joins with the top end of the vagina." [Wikipedia:Cervix]
comment: This class was created automatically from a combination of ontologies.
subset: uberon_slim
synonym: "Cervical canal" EXACT []
synonym: "cervical canal" EXACT []
synonym: "Cervical canal of uterus" EXACT []
synonym: "cervical canal of uterus" EXACT []
synonym: "cervix" EXACT []
synonym: "Cervix of uterus" EXACT []
synonym: "cervix of uterus" EXACT []
synonym: "Neck of uterus" EXACT []
synonym: "neck of uterus" EXACT []
synonym: "Uterine cervix" EXACT []
synonym: "uterine cervix" EXACT []
xref: BTO:0001421
xref: EFO:0000979
xref: FMA:17740
xref: GAID:376
xref: HOG:0001359
xref: MA:0000392
xref: MAT:0000292
xref: OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA
is_a: UBERON:0001560 ! neck of organ
relationship: continuous_with UBERON:0000996 ! vagina
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0000003
name: naris
def: "One of the two channels of the nose, from the point where they bifurcate to the external opening. In birds and mammals, they contain branched bones or cartilages called turbinates, whose function is to warm air on inhalation and remove moisture on exhalation. Fish do not breathe through their noses, but they do have two small holes used for smelling which may be called nostrils." [Wikipedia:Naris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "olfactory pits" RELATED []
xref: AAO:0000311
xref: EHDAA:9083
xref: FMA:59645
xref: HOG:0000663
xref: MA:0001320
xref: TAO:0001427
xref: XAO:0003033
xref: ZFA:0001427
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002109 ! set of nares
[Term]
id: UBERON:0000004
name: olfactory apparatus
def: "Surface structure that houses the nostrils, or nares, which admit and expel air for respiration in conjunction with the mouth. and behind the nose is the olfactory mucosa and the sinuses. Behind the nasal cavity, air next passes through the pharynx, shared with the digestive system, and then into the rest of the respiratory system. In humans, the nose is located centrally on the face; on most other mammals, it is on the upper tip of the snout. In cetaceans, the nose has been reduced to the nostrils, which have migrated to the top of the head, producing a more streamlined body shape and the ability to breathe while mostly submerged. Conversely, the elephant's nose has elaborated into a long, muscular, manipulative organ called the trunk. GO: The nose is the specialized structure of the face that serves as the organ of the sense of smell and as part of the respiratory system. Includes the nasi externus (external nose) and cavitas nasi (nasal cavity)." [Wikipedia:Nose]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nose" EXACT []
synonym: "peripheral olfactory organ" EXACT []
synonym: "proboscis" RELATED []
xref: BTO:0000840
xref: EFO:0000828
xref: EHDAA:1502
xref: FMA:46472
xref: GAID:77
xref: MA:0000281
xref: MAT:0000139
xref: MIAA:0000139
xref: ncithesaurus:Nose
xref: OpenCyc:Mx4rvViCbJwpEbGdrcN5Y29ycA
xref: TAO:0000047
xref: ZFA:0000047
is_a: UBERON:0000005 ! chemosensory sensory organ
relationship: develops_from UBERON:0003050 ! olfactory placode
[Term]
id: UBERON:0000005
name: chemosensory sensory organ
def: "." [Wikipedia:Olfactory_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "olfactory system" EXACT []
xref: AAO:0000334
xref: BILA:0000144
xref: EFO:0001973
xref: FBbt:00005157
xref: FMA:7190
xref: MA:0002445
xref: TAO:0001149
xref: XAO:0000201
xref: ZFA:0001149
is_a: UBERON:0000020 ! sense organ
[Term]
id: UBERON:0000006
name: islet of Langerhans
def: "." [Wikipedia:Islet_of_Langerhans]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "endocrine pancreas" RELATED []
synonym: "islet of Langerhans" EXACT []
synonym: "islet of langerhans" RELATED []
synonym: "Islets of Langerhans" EXACT []
synonym: "islets of langerhans" EXACT []
synonym: "Pancreatic insula" EXACT []
synonym: "pancreatic insula" EXACT []
synonym: "Pancreatic islet" EXACT []
synonym: "pancreatic islet" EXACT []
xref: BTO:0000991
xref: EFO:0000856
xref: FMA:16016
xref: GAID:324
xref: HOG:0000646
xref: MA:0000127
xref: MAT:0000076
xref: MIAA:0000076
xref: ncithesaurus:Islet_of_Langerhans
xref: XAO:0000159
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0000007
name: pituitary gland
def: "The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN]." [Wikipedia:Pituitary_gland, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hypophysis" RELATED []
synonym: "Hypophysis cerebri" EXACT []
synonym: "hypophysis cerebri" RELATED []
synonym: "Pituitary" EXACT []
synonym: "pituitary" EXACT []
synonym: "Pituitary gland" EXACT []
xref: EFO:0000857
xref: EHDAA:2183
xref: EHDAA:4477
xref: FMA:13889
xref: GAID:457
xref: MA:0000176
xref: MAT:0000077
xref: MIAA:0000077
xref: ncithesaurus:Pituitary_Gland
xref: OpenCyc:Mx4rv6NQYJwpEbGdrcN5Y29ycA
xref: TAO:0000118
xref: XAO:0000161
xref: ZFA:0000118
is_a: UBERON:0002530 ! gland
is_a: UBERON:0003296 ! implied link automatically realized ! gland of diencephalon
relationship: part_of UBERON:0000949 ! endocrine system
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0000009
name: submucosa
def: "." [Wikipedia:Submucosa]
subset: uberon_slim
xref: BTO:0002107
xref: FMA:85391
xref: ncithesaurus:Submucosa
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000010
name: peripheral nervous system
def: "Nervous structures including ganglia outside of the central nervous system. Divided into somatic nervous system and autonomic nervous system" [FB:gg, OMD:peripheral+nervous+system, Wikipedia:Peripheral_nervous_system, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "PNS" RELATED []
xref: AAO:0000429
xref: BILA:0000081
xref: BTO:0001028
xref: EFO:0000891
xref: EHDAA:2893
xref: FBbt:00005098
xref: FMA:9903
xref: GAID:715
xref: HOG:0000399
xref: MA:0000218
xref: MAT:0000338
xref: MIAA:0000338
xref: ncithesaurus:Peripheral_Nervous_System
xref: NIF_GrossAnatomy:birnlex_1111
xref: TAO:0000142
xref: XAO:0000178
xref: ZFA:0000142
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0000011
name: parasympathetic nervous system
def: "The parasympathetic nervous system (PSNS) is a division of the autonomic nervous system (ANS), along with the sympathetic nervous system (SNS) and enteric nervous system (ENS). The ANS is a subdivision of the peripheral nervous system (PNS). ANS sends fibers to three tissues: cardiac muscle, smooth muscle, or glandular tissue. This stimulation, sympathetic or parasympathetic, is to control smooth muscle contraction, regulate cardiac muscle, or stimulate or inhibit glandular secretion [Wikipedia]. The parasympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia [GO]." [Wikipedia:Parasympathetic_nervous_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Parasympathetic nervous system" EXACT []
synonym: "Parasympathetic part of autonomic division of nervous system" EXACT []
synonym: "parasympathetic part of autonomic division of nervous system" EXACT []
synonym: "PNS - parasympathetic" EXACT []
synonym: "pns - parasympathetic" EXACT []
xref: BTO:0001833
xref: EFO:0000894
xref: EHDA:10096
xref: FMA:9907
xref: GAID:708
xref: HOG:0000755
xref: MA:0000223
xref: MAT:0000101
xref: MIAA:0000101
xref: ncithesaurus:Parasympathetic_Nervous_System
xref: NIF_GrossAnatomy:birnlex_2517
xref: TAO:0001575
xref: ZFA:0001575
is_a: UBERON:0002410 ! autonomic nervous system
relationship: part_of UBERON:0002410 ! autonomic nervous system
[Term]
id: UBERON:0000012
name: somatic nervous system
def: "." [Wikipedia:Somatic_nervous_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "PNS - somatic" EXACT []
synonym: "pns - somatic" EXACT []
xref: EFO:0000892
xref: EFO:0000898
xref: FMA:9904
xref: MA:0002850
xref: MAT:0000099
xref: MAT:0000342
xref: MIAA:0000099
xref: MIAA:0000342
xref: WBbt:0005760
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0000013
name: sympathetic nervous system
def: "The Sympathetic Nervous System (SNS) is a branch of the autonomic nervous system along with the enteric nervous system and parasympathetic nervous system. It is always active at a basal level (called sympathetic tone) and becomes more active during times of stress. Its actions during the stress response comprise the fight-or-flight response [Wikipedia]. he sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [GO]." [Wikipedia:Sympathetic_nervous_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sympathetic nervous system" EXACT []
synonym: "sympathetic nervous system" EXACT []
synonym: "Sympathetic part of autonomic division of nervous system" EXACT []
synonym: "sympathetic part of autonomic division of nervous system" EXACT []
xref: BTO:0001832
xref: EFO:0000893
xref: FMA:9906
xref: GAID:710
xref: HOG:0000384
xref: MA:0000225
xref: MIAA:0000100
xref: ncithesaurus:Sympathetic_Nervous_System
xref: NIF_GrossAnatomy:birnlex_2516
xref: TAO:0001576
xref: ZFA:0001576
is_a: UBERON:0002410 ! autonomic nervous system
relationship: part_of UBERON:0002410 ! autonomic nervous system
[Term]
id: UBERON:0000014
name: zone of skin
xref: FMA:86166
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002097 ! skin
[Term]
id: UBERON:0000015
name: anatomical boundary
def: "Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface." [CARO:MAH]
synonym: "anatomical line" EXACT []
xref: BILA:0000008
xref: CARO:0000008
xref: FMA:256502
xref: HAO:0000008
xref: ZFA:0001689
is_a: UBERON:0000466 ! immaterial anatomical entity
disjoint_from: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0000016
name: endocrine pancreas
def: "The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin[GO]. // The zebrafish endocrine pancreas is composed of small groups of islet cells that are distributed throughout the exocrine pancreas[ZFIN]. The islet cells produce insulin, glucagon and somatostatin." [GOC:GO, Wikipedia:Endocrine_pancreas]
subset: uberon_slim
synonym: "Endocrine pancreas" EXACT []
synonym: "endocrine pancreas" EXACT []
synonym: "Pars endocrina pancreatis" EXACT []
synonym: "pars endocrina pancreatis" EXACT []
xref: BTO:0000650
xref: FMA:16018
xref: HOG:0000049
xref: MA:0001582
xref: ncithesaurus:Endocrine_Pancreas
xref: TAO:0001260
xref: ZFA:0001260
is_a: UBERON:0002075 ! viscus
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0000017
name: exocrine pancreas
def: "The exocrine pancreas produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells [GO] // The exocrine pancreas is composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion." [GOC:GO, Wikipedia:Exocrine_pancreas]
subset: uberon_slim
synonym: "Exocrine pancreas" EXACT []
synonym: "exocrine pancreas" EXACT []
synonym: "Pars exocrina pancreatis" EXACT []
synonym: "pars exocrina pancreatis" EXACT []
xref: BTO:0000434
xref: FMA:16017
xref: HOG:0000048
xref: MA:0002415
xref: ncithesaurus:Exocrine_Pancreas
xref: TAO:0001249
xref: XAO:0000137
xref: ZFA:0001249
is_a: UBERON:0002075 ! viscus
relationship: part_of UBERON:0001264 ! pancreas
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0000018
name: compound eye
def: "A light sensing organ composed of ommatidia" [FB:gg, Wikipedia:Compound_eye]
subset: uberon_slim
synonym: "adult compound eye" RELATED []
synonym: "insect eye" RELATED []
xref: BTO:0001921
xref: FBbt:00004508
xref: HAO:0000217
is_a: UBERON:0000970 ! eye
relationship: has_part UBERON:0000971 ! ommatidium
[Term]
id: UBERON:0000019
name: camera-type eye
alt_id: UBERON:FMA_12513-MIAA_0000283-XAO_0000181
def: "GO: The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field. Organ with organ cavity which is connected to the optic nerve, allowing light to enter it and project onto a light-sensitive panel of cells, known as the retina, at the rear of the eye [FMA]." [FMA:12513, GO:0043010, Image:http\://genome.cshlp.org/content/14/8/1555/F1.large.jpg, Image:http\://www.pnas.org/content/94/6/2098/F1.large.jpg]
subset: uberon_slim
synonym: "Orbital part of face" RELATED []
synonym: "Orbital region" RELATED []
synonym: "vertebrate eye" EXACT []
xref: FMA:12513
xref: MA:0000261
xref: TAO:0000107
xref: XAO:0000179
xref: ZFA:0000107
is_a: UBERON:0000047 ! simple eye
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0000020
name: sense organ
def: "An organ that is part of a sense organ system." [Wikipedia:Sense_organ]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sensillum" NARROW [WBbt:0006929]
synonym: "sensor" RELATED []
synonym: "sensory organ" EXACT []
xref: BTO:0000202
xref: EHDAA:500
xref: FBbt:00005155
xref: FMA:75259
xref: GAID:63
xref: HAO:0000930
xref: HOG:0001407
xref: MA:0000017
xref: WBbt:0006929
is_a: UBERON:0000062 ! organ
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0001032 ! sense organ system
relationship: part_of UBERON:0001032 ! sense organ system
[Term]
id: UBERON:0000021
name: cutaneous appendage
def: "Appendage that protrudes from the skin" []
subset: uberon_slim
is_a: UBERON:0000026 ! appendage
relationship: part_of UBERON:0002097 ! skin
[Term]
id: UBERON:0000022
name: feather
def: "." [Wikipedia:Feather]
subset: uberon_slim
xref: BTO:0000447
xref: EFO:0000955
xref: GAID:1214
xref: MAT:0000156
xref: OpenCyc:Mx4rvVjW-5wpEbGdrcN5Y29ycA
is_a: UBERON:0000021 ! cutaneous appendage
[Term]
id: UBERON:0000023
name: wing
def: "Appendage that is used to produce lift for flight through the air." [Wikipedia:Wing]
comment: This class is not monophyletic. See also: GO:0007629
subset: uberon_slim
xref: BTO:0001463
xref: EFO:0000885
xref: GAID:1217
xref: MAT:0000202
xref: MIAA:0000202
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000024
name: forelimb wing
def: "Forelimb that is used to produce lift for flight through the air." []
subset: uberon_slim
is_a: UBERON:0000023 ! wing
is_a: UBERON:0002102 ! forelimb
[Term]
id: UBERON:0000025
name: tube
def: "Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts. with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system" [GO:0035295, PMID:12526790]
xref: ncithesaurus:Tube
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000026
name: appendage
def: "Organ or organ part that is attached to the trunk of an organism. For example a limb[GO]." [GO:0048736, Wikipedia:Appendage]
subset: uberon_slim
xref: BILA:0000018
xref: EFO:0000799
xref: HAO:0000144
xref: MAT:0000023
xref: ncithesaurus:Appendage
xref: OpenCyc:Mx4rvViC-JwpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
relationship: attached_to UBERON:0002100 ! trunk
[Term]
id: UBERON:0000027
name: hind digit
comment: This class was created automatically from a combination of ontologies
synonym: "hind digit" EXACT []
synonym: "hindlimb digit" RELATED []
xref: AAO:0000888
xref: XAO:0003035
is_a: UBERON:0002544 ! digit
[Term]
id: UBERON:0000028
name: fore digit
def: "A digit of the forelimb." [UBERON:xp]
comment: This class was created automatically from a combination of ontologies
synonym: "fore digit" EXACT []
synonym: "forelimb digit" RELATED []
xref: AAO:0000857
xref: XAO:0003036
is_a: UBERON:0002544 ! digit
intersection_of: UBERON:0002544 ! digit
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0000029
name: lymph node
def: "Oval or bean shaped bodies (1 - 30 mm in diameter) located along the lymphatic system. Lymph nodes are garrisons of B, T, and other immune cells. Lymph nodes are found all through the body, and act as filters or traps for foreign particles. They contain white blood cells that use oxygen to process. Thus they are important in the proper functioning of the immune system[WP]." [GAID:947, Wikipedia:Lymph_node]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000784
xref: EFO:0000872
xref: FMA:5034
xref: GAID:947
xref: HOG:0001273
xref: MA:0000139
xref: MAT:0000442
xref: ncithesaurus:Lymph_Node
is_a: UBERON:0000064 ! organ part
relationship: continuous_with UBERON:0001473 ! lymphatic vessel
relationship: has_part UBERON:0002391 ! lymph
relationship: part_of UBERON:0002465 ! lymphoid system
[Term]
id: UBERON:0000030
name: lamina propria
def: "A thin layer of loose connective tissue which lies beneath the epithelium and together with the epithelium constitutes the mucosa[WP]. The lamina propria contains capillaries and a central lacteal (lymph vessel) in the small intestine, as well as lymphoid tissue. Lamina propria also contains glands with the ducts opening on to the mucosal epithelium, that secrete mucus and serous secretions." [Wikipedia:Lamina_propria]
subset: uberon_slim
synonym: "lamina propria mucosa" EXACT []
synonym: "lamina propria mucosae" EXACT []
xref: BTO:0002330
xref: ncithesaurus:Lamina_Propria
is_a: UBERON:0002384 ! connective tissue
relationship: adjacent_to UBERON:0000483 ! epithelium
relationship: part_of UBERON:0000344 ! mucosa
[Term]
id: UBERON:0000031
name: lamina propria of trachea
synonym: "trachea lamina propria" EXACT []
synonym: "tracheal lamina propria" EXACT []
xref: FMA:62517
xref: MA:0001858
xref: ncithesaurus:Trachea_Lamina_Propria
is_a: UBERON:0000030 ! lamina propria
is_a: UBERON:0003571 ! implied link automatically realized ! trachea connective tissue
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0001005 ! trachea
relationship: part_of UBERON:0001005 ! trachea
[Term]
id: UBERON:0000032
name: cranial structure
def: "Bony structure in the head of the animal. Encompasses structures consisting of bone or sclerite." [Wikipedia:Cranium]
subset: uberon_slim
synonym: "cranium" RELATED []
synonym: "skull" RELATED []
xref: HAO:0000234
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0000033
name: head
alt_id: UBERON:FBbt_00000004-FBbt_00003007-FMA_46565-FMA_7154-FMA_87596-MA_0000023-MA_0000316-MIAA_0000017-MIAA_0000149-MIAA_0000294-MIAA_0000340-WBbt_0005739-XAO_0003024-ZFA_0000737-ZFA_0001114
def: "The head is the anterior-most division of the body [GO]. Subdivision of skeletal system which consists of the skeleton of the head and its joints. // Cardinal body part, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the skull, it is partially surrounded by skin of head. Examples: There is only one head. // anterior-most body region containing the pharynx. // Organism subdivision that is the part of the body consisting of the cranial and pharyngeal regions. // Skeletal system which is part of the skull, including the splanchnocranium, chondrocranium, and dermatocranium. // Organism subdivision which is the part of the body which consists of the cranial and pharygeal regions." [WB:rynl, Wikipedia:Head, ZFA:0001114, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adult head" EXACT []
synonym: "chondrocranium" RELATED []
synonym: "cranial skeleton" RELATED []
synonym: "epicranial plate" RELATED []
synonym: "Head" EXACT []
synonym: "head tissue" RELATED []
xref: BILA:0000115
xref: BTO:0000282
xref: EFO:0000964
xref: EHDAA:9184
xref: FBbt:00000004
xref: FMA:7154
xref: GAID:61
xref: galen:Head
xref: HAO:0000397
xref: MA:0000023
xref: MAT:0000294
xref: MIAA:0000294
xref: ncithesaurus:Head
xref: NIF_GrossAnatomy:birnlex_1230
xref: OpenCyc:Mx4rvVi6YJwpEbGdrcN5Y29ycA
xref: TAO:0001114
xref: WBbt:0005739
xref: XAO:0003024
xref: ZFA:0001114
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000035
name: primary ovarian follicle
synonym: "Folliculus ovaricus primarius" EXACT [FMA:18634]
synonym: "folliculus ovaricus primarius" EXACT []
synonym: "preantral follicle of ovary" EXACT []
synonym: "primary egg follicle" RELATED []
synonym: "primary follicle of ovary" EXACT [FMA:18634]
xref: FMA:18634
is_a: UBERON:0001305 ! follicle of ovary
[Term]
id: UBERON:0000036
name: secondary ovarian follicle
synonym: "antral follicle of ovary" EXACT []
synonym: "Folliculus ovaricus secondarius" EXACT [FMA:18637]
synonym: "folliculus ovaricus secondarius" EXACT []
synonym: "secondary egg follicle" RELATED []
synonym: "secondary follicle of ovary" EXACT []
xref: FMA:18637
is_a: UBERON:0001305 ! follicle of ovary
relationship: develops_from UBERON:0000035 ! primary ovarian follicle
[Term]
id: UBERON:0000037
name: tertiary ovarian follicle
def: "." [Wikipedia:Graafian_follicle]
subset: uberon_slim
synonym: "Folliculus ovaricus tertiarius" EXACT [FMA:18641]
synonym: "folliculus ovaricus tertiarius" EXACT []
synonym: "Folliculus ovaricus tertiarius (vesiculous)" EXACT [FMA:18641]
synonym: "folliculus ovaricus tertiarius (vesiculous)" EXACT []
synonym: "Graafian follicle" EXACT []
synonym: "graafian follicle" EXACT []
synonym: "tertiary egg follicle" RELATED []
xref: FMA:18641
xref: ncithesaurus:Graafian_Follicle
is_a: UBERON:0001305 ! follicle of ovary
relationship: develops_from UBERON:0000036 ! secondary ovarian follicle
[Term]
id: UBERON:0000038
name: follicular fluid
def: "The fluid surrounding the OVUM and GRANULOSA CELLS in the Graafian follicle ( OVARIAN FOLLICLE). The follicular fluid contains sex steroids, glycoprotein hormones, plasma proteins, mucopolysaccharides, and enzymes." [MESH:D015571, Wikipedia:Follicular_fluid]
comment: Follicular fluid is a liquid which fills the follicular antrum and surrounds the ovum in an ovarian follicle. This fluid is rich in hyaluronic acid.
subset: uberon_slim
synonym: "antral fluid, ovarian follicle" RELATED []
synonym: "liquor folliculi" RELATED []
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001305 ! follicle of ovary
relationship: surrounded_by UBERON:0000039 ! follicular antrum
[Term]
id: UBERON:0000039
name: follicular antrum
def: "Region of ovarian follicle filled with follicular fluid." [http://en.wikipedia.org/wiki/Follicular_antrum, Wikipedia:Follicular_antrum]
subset: uberon_slim
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001305 ! follicle of ovary
[Term]
id: UBERON:0000040
name: Leydig's organ
def: "Along with the spleen and special tissue around the gonads, this structure produces red blood cells and it is nestled along the top and bottom of the esophagus. Found in elasmobranchs (sharks and rays) but with some exceptions. Leydig's organ can be quite large - a 1.6-kilogram (3.5-pound) one was reported from a 1.8-metre (6-foot) long Bluntnose Sixgill Shark (Hexanchus griseus)" [http://www.elasmo-research.org/education/topics/p_blood_cells.htm, Wikipedia:Leydig's_organ]
subset: uberon_slim
is_a: UBERON:0003103 ! compound organ
[Term]
id: UBERON:0000041
name: dermal denticle
def: "small outgrowths which cover the skin of many cartilaginous fish including sharks. They are similar in structure to teeth, and teeth may have evolved from denticle-like structures in primitive fish.[citation needed] The placoid scales in sharks are formed of dentine with dermal papillae located in the core. These scales develop from the dermal layer of the skin, which is in contrast to the epidermal development seen the in the elasmoid scales of tetrapods. The shape of denticle varies from species to species and can be used in identification. Studies have found that the denticles create tiny vortices that reduce drag to make swimming more efficient. Denticles also allow sharks to swim silently compared to other fish that generate considerable noise when they ply the water." [http://en.wikipedia.org/wiki/Dermal_denticle, Wikipedia:Dermal_denticle]
comment: TODO check dentin def
subset: uberon_slim
synonym: "placoid scale" EXACT []
is_a: UBERON:0000481 ! multi-tissue structure
relationship: has_part UBERON:0001751 ! dentine
[Term]
id: UBERON:0000042
name: serous membrane
def: "a smooth membrane consisting of a thin layer of cells which excrete serous fluid. Serous membranes line and enclose several body cavities, known as serous cavities, where they secrete a lubricating fluid which reduces friction from muscle movement. Serosa is not to be confused with adventitia, a connective tissue layer which binds together structures rather than reducing friction between them[WP]." [Wikipedia:Serosa, Wikipedia:Serous_membrane]
comment: TODO - add generic membrane parent?
subset: uberon_slim
synonym: "serosa" EXACT []
xref: FMA:45637
xref: FMA:9581
xref: ncithesaurus:Serosa
is_a: UBERON:0000061 ! anatomical structure
relationship: has_part UBERON:0001136 ! mesothelium
relationship: has_part UBERON:0002384 ! connective tissue
[Term]
id: UBERON:0000043
name: tendon
def: "A fibrous, strong, connective tissue that connects muscle to bone or integument and is capable of withstanding tension. Tendons are similar to ligaments except that ligaments join one bone to another. Tendons and muscles work together and can only exert a pulling force." [BTO:0000421, http://en.wikipedia.org/wiki/Tendon, OMD:connective+tissue, OMD:tendon, Wikipedia:Tendon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Tendon" EXACT []
xref: BTO:0001356
xref: EFO:0000952
xref: FMA:9721
xref: GAID:276
xref: HAO:0000996
xref: HOG:0001286
xref: MA:0000115
xref: ncithesaurus:Tendon
xref: OpenCyc:Mx4rvVjefJwpEbGdrcN5Y29ycA
xref: XAO:0000173
is_a: UBERON:0002384 ! connective tissue
relationship: attached_to UBERON:0002385 ! muscle tissue
[Term]
id: UBERON:0000044
name: dorsal root ganglion
def: "Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves" [Wikipedia:Dorsal_root_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dorsal root ganglia" RELATED []
synonym: "Dorsal root ganglion" EXACT []
synonym: "dorsal root ganglion" EXACT []
synonym: "DRG" RELATED []
synonym: "Ganglion spinalis" EXACT []
synonym: "ganglion spinalis" EXACT []
synonym: "Spinal ganglion" EXACT []
synonym: "spinal ganglion" RELATED []
xref: BTO:0001264
xref: EFO:0000900
xref: EHDAA:2899
xref: FMA:5888
xref: HOG:0000222
xref: MA:0000232
xref: MAT:0000162
xref: MIAA:0000162
xref: ncithesaurus:Dorsal_Root_Ganglion
xref: NIF_GrossAnatomy:birnlex_2596
xref: TAO:0000200
xref: XAO:0000210
xref: ZFA:0000200
is_a: UBERON:0001800 ! sensory ganglion
is_a: UBERON:0003339 ! implied link automatically realized ! ganglion of central nervous system
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0002261 ! dorsal root
relationship: develops_from UBERON:0003083 ! trunk neural crest
relationship: part_of UBERON:0002261 ! dorsal root
[Term]
id: UBERON:0000045
name: ganglion
alt_id: UBERON:FBbt_00005137-FMA_5884-FMA_5888-MA_0000232-MA_0002406-MIAA_0000162-MIAA_0000207-MIAA_0000343-WBbt_0005189-XAO_0000209-XAO_0000210-ZFA_0000190-ZFA_0000200
def: "Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system. // Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com) //" [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, NLM:ganglion, WB:rynl, Wikipedia:Ganglion, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ganglia" RELATED []
synonym: "Ganglion" EXACT []
synonym: "invertebrate ganglion" EXACT []
xref: BTO:0000497
xref: EFO:0000890
xref: EFO:0000899
xref: EHDAA:2897
xref: EHDAA:4662
xref: EHDAA:5621
xref: EHDAA:918
xref: FBbt:00005137
xref: FMA:5884
xref: HOG:0000156
xref: MA:0002406
xref: MAT:0000207
xref: MAT:0000343
xref: MIAA:0000207
xref: MIAA:0000343
xref: ncithesaurus:Ganglion
xref: NIF_GrossAnatomy:birnlex_2596
xref: TAO:0000190
xref: WBbt:0005189
xref: XAO:0000209
xref: ZFA:0000190
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0000046
name: stemma
def: "eye-spots which may be set into a pit to reduce the angles of light that enters and affects the eyespot, to allow the organism to deduce the angle of incoming light" [Wikipedia:Eye#Pit_eyes, Wikipedia:Stemma]
subset: uberon_slim
synonym: "pit eye" EXACT [Wikipedia:Eye#Pit_eyes]
is_a: UBERON:0000047 ! simple eye
[Term]
id: UBERON:0000047
name: simple eye
def: "An eye with one concave chamber. Note that \"simple\" does not imply a reduced level of complexity or acuity." [Wikipedia:Eye#Simple_eyes]
subset: uberon_slim
is_a: UBERON:0000970 ! eye
[Term]
id: UBERON:0000048
name: pinhole eye
def: "Simple eye that has a small aperture (which may be adjustable) and deep pit. It is only found in the nautiloids." [DOI:10.1146/annurev.ne.15.030192.000245, Wikipedia:Pinhole_eye]
subset: uberon_slim
is_a: UBERON:0000047 ! simple eye
[Term]
id: UBERON:0000049
name: spherical lensed eye
def: "simple eye that consists of a lens of one refractive index" [Wikipepedia:Eye#Spherical_lensed_eye]
is_a: UBERON:0000047 ! simple eye
[Term]
id: UBERON:0000050
name: simple eye with multiple lenses
def: "simple eye that has two or more lenses. Some marine organisms bear more than one lens; for instance the copeopod Pontella has three. The outer has a parabolic surface, countering the effects of spherical aberration while allowing a sharp image to be formed. Copilla's eyes have two lenses, which move in and out like a telescope" [Wikipedia:Eye#Multiple_lenses]
subset: uberon_slim
is_a: UBERON:0000047 ! simple eye
relationship: has_part UBERON:0000965 ! lens
[Term]
id: UBERON:0000051
name: fornix of vagina
def: "." [Wikipedia:Fornix_vaginae]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fornix" BROAD []
synonym: "vaginal fornix" EXACT []
xref: FMA:19985
xref: ncithesaurus:Vaginal_Fornix
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0000052
name: fornix of brain
def: "." [Wikipedia:Fornix_of_brain]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "brain fornix" EXACT []
synonym: "fornix" BROAD []
xref: MA:0002747
xref: NIF_GrossAnatomy:birnlex_705
is_a: UBERON:0002437 ! cerebral white matter
[Term]
id: UBERON:0000053
name: macula lutea
def: "Oval yellow spot near the center of the retina of the human eye. It has a diameter of around 5 mm and is often histologically defined as having two or more layers of ganglion cells. Near its center is the fovea, a small pit that contains the largest concentration of cone cells in the eye and is responsible for central vision, and also contains the parafovea and perifovea." [Wikipedia:Macula_lutea]
subset: uberon_slim
synonym: "Macula" EXACT []
synonym: "macula" EXACT []
synonym: "Macula lutea" EXACT []
synonym: "maculae" RELATED []
xref: BTO:0003015
xref: FMA:58637
xref: GAID:909
xref: MA:0001306
xref: ncithesaurus:Macula
xref: NIF_GrossAnatomy:birnlex_2540
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0000054
name: macula
def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern." [ZFIN:curator]
subset: uberon_slim
synonym: "Macula" EXACT []
synonym: "macula" EXACT []
synonym: "maculae" RELATED []
xref: ncithesaurus:Macula
xref: TAO:0000386
xref: ZFA:0000386
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0000055
name: vessel
def: "A tubular structure that contains, conveys body fluid, suchas blood or lymph." [UBERON:cjm]
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000056
name: ureter
def: "The ureter is one of a pair of thick-walled tubes that transports urine from the kidney pelvis to the urinary bladder[GO]. Muscular duct that propels urine from the kidneys to the urinary bladder, or related organs. In humans, organ with organ cavity which connects the renal sinus to the urinary bladder. Examples: There are only two ureters, the right and the left ureters." [Wikipedia:Ureter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001409
xref: EFO:0000930
xref: EHDAA:9341
xref: FBbt:00005793
xref: FMA:9704
xref: GAID:438
xref: HOG:0000605
xref: MA:0000378
xref: MAT:0000120
xref: MIAA:0000120
xref: ncithesaurus:Ureter
xref: OpenCyc:Mx4rvhmm6JwpEbGdrcN5Y29ycA
xref: WBbt:0005777
xref: XAO:0000144
is_a: UBERON:0000062 ! organ
relationship: continuous_with UBERON:0001255 ! urinary bladder
relationship: continuous_with UBERON:0002113 ! kidney
[Term]
id: UBERON:0000057
name: urethra
def: "Organ with organ cavity which connects the cavity of the urinary bladder to the exterior. Examples: There is only one urethra." [Wikipedia:Urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001426
xref: EFO:0000931
xref: FMA:19667
xref: GAID:390
xref: HOG:0001264
xref: MA:0000379
xref: MAT:0000121
xref: MIAA:0000121
xref: ncithesaurus:Urethra
xref: OpenCyc:Mx4rvVjkypwpEbGdrcN5Y29ycA
xref: WBbt:0005777
xref: XAO:0000153
is_a: UBERON:0000062 ! organ
relationship: continuous_with UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0000058
name: duct
def: "A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171]
xref: FMA:30320
xref: galen:Duct
xref: HAO:0000282
xref: ncithesaurus:Duct
xref: ZFA:0005171
is_a: UBERON:0000063 ! organ segment
[Term]
id: UBERON:0000059
name: large intestine
def: "The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal. Examples: There is only large intestine [FMA]." [Wikipedia:Large_intestine_(anatomy)]
xref: BTO:0000706
xref: EFO:0000840
xref: FMA:7201
xref: galen:LargeIntestine
xref: HOG:0000054
xref: MA:0000333
xref: MIAA:0000046
xref: ncithesaurus:Large_Intestine
xref: OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA
xref: XAO:0000131
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001555 ! gut
[Term]
id: UBERON:0000060
name: anatomical wall
def: "anatomical structure with bona-fide boundary that functions as a barrier." [UBERON:cjm]
synonym: "wall" EXACT []
xref: ncithesaurus:Wall
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000061
name: anatomical structure
alt_id: UBERON:CARO_0000003-CARO_0000024-FBbt_00000001-FBbt_00007001-FMA_67135-FMA_67498-WBbt_0003760-WBbt_0007833-XAO_0003000-XAO_0003041-ZFA_0000037-ZFA_0000496-ZFA_0001094
def: "Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome." [CARO:0000003]
comment: This class was created automatically from a combination of ontologies
synonym: "Biological structure" EXACT []
synonym: "biological structure" EXACT []
xref: BILA:0000003
xref: CARO:0000003
xref: FBbt:00007001
xref: FMA:67135
xref: HAO:0000003
xref: TAO:0000037
xref: XAO:0003000
xref: ZFA:0000037
is_a: UBERON:0000465 ! material anatomical entity
[Term]
id: UBERON:0000062
name: organ
def: "Anatomical structure that performs a specific function or group of functions [WP]. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions[GO]." [Wikipedia:Organ_(anatomy)]
comment: More specific definition from CARO -- Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types.
xref: BILA:0000053
xref: CARO:0000024
xref: EFO:0000634
xref: FMA:67498
xref: HOG:0000671
xref: ncithesaurus:Organ
xref: OpenCyc:Mx4rwP3iWpwpEbGdrcN5Y29ycA
xref: XAO:0003041
xref: ZFA:0000496
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000467 ! anatomical system
[Term]
id: UBERON:0000063
name: organ segment
def: "Organ region with one or more fixed or anchored fiat boundaries. Examples: artery, trunk of nerve, cervical part of esophagus, pelvic part of vagina, horn of thyroid cartilage, anterior segment of eyeball[FMA]." [FMA:86140]
xref: FMA:86140
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000064
name: organ part
def: "anatomical structure which has as its direct parts two or more types of tissue and is continuous with one or more anatomical structures likewise constituted by two or more portions of tissues distinct from those of their complement. Examples: osteon, cortical bone, neck of femur, bronchopulmonary segment, left lobe of liver, anterior right side of heart, interventricular branch of left coronary artery, right atrium, mitral valve, head of pancreas[FMA]." [FMA:82472]
synonym: "cardinal organ part" EXACT []
xref: EFO:0000635
xref: FMA:82472
is_a: UBERON:0000061 ! anatomical structure
disjoint_from: UBERON:0000062 ! organ
relationship: part_of UBERON:0000062 ! organ
[Term]
id: UBERON:0000065
name: respiratory tract
def: "anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [UBERON:cjm]
xref: HOG:0000393
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_from UBERON:0000925 ! endoderm
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0000066
name: fully formed stage
def: "The stage of development at which the animal is fully formed, including immaturity and maturity. Includes both juvenile stage, and adult stage. " [UBERON:cjm]
synonym: "adult stage" BROAD []
synonym: "fully formed animal stage" EXACT []
synonym: "juvenile-adult stage" EXACT []
xref: FBdv:00005369
xref: XAO:1000009
is_a: UBERON:0000092 ! post-embryonic stage
relationship: preceded_by UBERON:0000111 ! organogenesis stage
[Term]
id: UBERON:0000067
name: embryo stage part
def: "A stage that is part of the embryo stage." [UBERON:cjm]
synonym: "embryonic stage" EXACT []
xref: FBdv:00005289
xref: XAO:1000012
is_a: UBERON:0000105 ! life cycle stage
intersection_of: UBERON:0000105 ! life cycle stage
intersection_of: part_of UBERON:0000068 ! embryo stage
relationship: part_of UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0000068
name: embryo stage
def: "A life cycle stage that starts with fertilization and ends with the fully formed embryo." []
synonym: "embryogenesis" RELATED []
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000104 ! life cycle
[Term]
id: UBERON:0000069
name: larval stage
synonym: "larva stage" EXACT []
xref: EFO:0001303
xref: FBdv:00005336
is_a: UBERON:0000092 ! post-embryonic stage
relationship: directly_preceded_by UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0000070
name: pupal stage
synonym: "pupa stage" EXACT []
xref: FBdv:00005349
is_a: UBERON:0000092 ! post-embryonic stage
relationship: directly_preceded_by UBERON:0000069 ! larval stage
[Term]
id: UBERON:0000071
name: death stage
def: "End of the life of an organism." [XAO:0000437]
synonym: "death" EXACT []
xref: ncithesaurus:Death
xref: XAO:0000437
is_a: UBERON:0000105 ! life cycle stage
relationship: finishes UBERON:0000104 ! life cycle
relationship: part_of UBERON:0000104 ! life cycle
[Term]
id: UBERON:0000072
name: segment of respiratory tract
xref: MA:0000434
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000065 ! respiratory tract
[Term]
id: UBERON:0000073
name: regional part of nervous system
synonym: "neural segment" EXACT []
synonym: "neuromere" EXACT []
xref: FBbt:00005140
xref: TAO:0001328
xref: ZFA:0001328
is_a: UBERON:0000061 ! anatomical structure
created_by: Melissa Haendel
creation_date: 2009-06-18T09:00:04Z
[Term]
id: UBERON:0000074
name: renal glomerulus
synonym: "glomerular tuft " RELATED []
synonym: "glomerulus" NARROW []
synonym: "renal corpuscle " RELATED []
xref: BTO:0000530
xref: FMA:15624
xref: MA:0001657
xref: XAO:0000146
xref: ZFA:0001288
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001230 ! glomerular capsule
created_by: Melissa Haendel
creation_date: 2009-06-18T09:26:37Z
[Term]
id: UBERON:0000075
name: subdivision of skeleton
synonym: "skeleton part" RELATED []
xref: FMA:23879
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
relationship: part_of UBERON:0001434 ! skeleton
created_by: cjm
creation_date: 2009-07-30T03:53:53Z
[Term]
id: UBERON:0000076
name: external ectoderm
def: "." [Wikipedia:External_ectoderm]
comment: In vertebrates, the ectoderm has three parts: external ectoderm (also known as surface ectoderm), the neurectoderm (neural crest, and neural tube).
synonym: "surface ectoderm" EXACT []
xref: FMA:87656
xref: ncithesaurus:Surface_Ectoderm
is_a: UBERON:0000923 ! germ layer
relationship: part_of UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0000077
name: mixed endoderm/mesoderm-derived structure
def: "An anatomical structure that develops from the endoderm." [UBERON:cjm]
comment: Grouping term for query purposes
is_a: UBERON:0000061 ! anatomical structure
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000925 ! endoderm
intersection_of: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0000078
name: mixed ectoderm/mesoderm/endoderm-derived structure
def: "An anatomical structure that develops from the endoderm." [UBERON:cjm]
comment: Grouping term for query purposesnGrouping term for query purposes
is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: develops_from UBERON:0000924 ! ectoderm
intersection_of: develops_from UBERON:0000925 ! endoderm
intersection_of: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0000079
name: male reproductive system
synonym: "male genitalia" NARROW []
xref: BTO:0000082
xref: EFO:0000970
xref: FBbt:00004828
xref: HAO:0000505
xref: HOG:0000725
xref: MA:0000396
xref: ncithesaurus:Male_Reproductive_System
xref: OpenCyc:Mx4rvViCepwpEbGdrcN5Y29ycA
is_a: UBERON:0000990 ! reproductive system
intersection_of: UBERON:0000990 ! reproductive system
intersection_of: part_of UBERON:0003101 ! male organism
disjoint_from: UBERON:0000474 ! female reproductive system
relationship: part_of UBERON:0003101 ! male organism
[Term]
id: UBERON:0000080
name: mesonephros
def: "In mammals, the mesonephros is the second of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the mesonephros will form the mature kidney[GO]. One of three excretory organs that develop in vertebrates. It serves as the main excretory organ of aquatic vertebrates and as a temporary kidney in higher vertebrates. composed of the mesonephric duct (also called the Wolffian duct), mesonephric tubules, and associated capillary tufts. A single tubule and its associated capillary tuft is called a mesonephric excretory unit; these units are similar in structure and function to nephrons of the adult kidney. The mesonephros is derived from intermediate mesoderm in the vertebrate embryo." [GO:0001823, Wikipedia:Mesonephros]
xref: EFO:0000928
xref: FMA:72171
xref: HOG:0000038
xref: ncithesaurus:Mesonephros
xref: ZFA:0000529
is_a: UBERON:0002113 ! kidney
relationship: develops_from UBERON:0002120 ! pronephros
[Term]
id: UBERON:0000081
name: metanephros
def: "In mammals, the metanephros is the excretory organ of the fetus, which develops into the mature kidney and is formed from the rear portion of the nephrogenic cord[GO]. During the fifth week of gestation, the mesonephric duct develops an outpouching, the ureteric bud, near its attachment to the cloaca. This bud, also called the metanephrogenic diverticulum, grows posteriorly and towards the head of the embryo. The elongated stalk of the ureteric bud, the metanephric duct, later forms the ureter. As the cranial end of the bud extends into the intermediate mesoderm, it undergoes a series of branchings to form the collecting duct system of the kidney. It also forms the major and minor calyces and the renal pelvis." [GO:0001656, Wikipedia:Metanephros#Metanephros]
xref: FMA:72172
xref: HOG:0000039
xref: ncithesaurus:Metanephros
is_a: UBERON:0002113 ! kidney
relationship: develops_from UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0000082
name: adult mammalian kidney
is_a: UBERON:0002113 ! kidney
relationship: develops_from UBERON:0000081 ! metanephros
relationship: develops_from UBERON:0000084 ! ureteric bud
[Term]
id: UBERON:0000083
name: mesonephric tubule
def: "Genital ridge that is next to the mesonephros." [Wikipedia:Mesonephric_tubules]
xref: HOG:0000500
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0000084
name: ureteric bud
def: "a protrusion from the mesonephric duct during the development of the urinary and reproductive organs. It later develops into the adult kidney, except for the nephrons, which, in contrast, originate from the metanephric blastema." [Wikipedia:Ureteric_bud]
synonym: "metanephric diverticulum" RELATED []
xref: BTO:0001646
xref: HOG:0000541
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0003074 ! mesonephric duct
[Term]
id: UBERON:0000085
name: morula
def: "An embryo at an early stage of embryonic development, consisting of cells (called blastomeres) in a solid ball contained within the zona pellucida." [Wikipedia:Morula]
xref: BTO:0001508
xref: ncithesaurus:Morula
is_a: UBERON:0000922 ! embryo
relationship: existence_starts_and_ends_during UBERON:0000108 ! blastula stage
relationship: surrounded_by UBERON:0000086 ! zona pellucida
[Term]
id: UBERON:0000086
name: zona pellucida
def: "A glycoprotein membrane surrounding the plasma membrane of an oocyte. It is a vital constitutive part of the latter, external but not extraneous to it. The zona pellucida first appears in multilaminar primary oocytes." [Wikipedia:Zona_pellucida]
synonym: "vitelline membrane" RELATED []
xref: BTO:0003135
xref: EHDAA:31
xref: EHDAA:62
xref: FMA:18674
xref: GAID:410
xref: MA:0001715
xref: ncithesaurus:Zona_Pellucida
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000087
name: inner cell mass
def: "Mass of cells inside the primordial embryo that will eventually give rise to the definitive structures of the fetus. This structure forms in the earliest steps of development, before implantation into the endometrium of the uterus has occurred. The ICM lies within the blastocoele (more correctly termed \"blastocyst cavity\", as it is not strictly homologous to the blastocoele of anamniote vertebrates) and is entirely surrounded by the single layer of cells called trophoblast." [Wikipedia:Inner_cell_mass]
synonym: "embryoblast" RELATED []
synonym: "pluriblast" RELATED []
xref: EFO:0000547
xref: FMA:86557
xref: HOG:0000742
xref: ncithesaurus:Inner_Cell_Mass
is_a: UBERON:0002050 ! embryonic structure
relationship: surrounded_by UBERON:0000088 ! trophoblast
[Term]
id: UBERON:0000088
name: trophoblast
def: "Aggregate of cells forming the outer layer of a blastocyst, which provide nutrients to the embryo and develop into a large part of the placenta. They are formed during the first stage of pregnancy and are the first cells to differentiate from the fertilized egg." [Wikipedia:Trophoblast]
synonym: "trophoblast layer" RELATED [MP:0005031]
xref: BTO:0001079
xref: FMA:83029
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000089
name: hypoblast
def: "The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm. Kimmel et al, 1995." [Wikipedia:Hypodermis, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hypoblast" EXACT []
synonym: "mesendoderm" RELATED []
xref: AAO:0000229
xref: EFO:0001930
xref: HOG:0001222
xref: MAT:0000418
xref: MIAA:0000418
xref: ncithesaurus:Hypoblast
xref: TAO:0000117
xref: XAO:0003044
xref: ZFA:0000117
is_a: UBERON:0002050 ! embryonic structure
relationship: adjacent_to UBERON:0002532 ! epiblast
relationship: part_of UBERON:0000091 ! bilaminar disc
[Term]
id: UBERON:0000090
name: blastocele
def: "fluid-filled central region of a blastocyst. A blastocoele forms during embryogenesis when a zygote (a fertilized ovum) divides into many cells through mitosis." [Wikipedia:Blastocele]
synonym: "blastocyst cavity" RELATED []
synonym: "cleavage cavity" EXACT []
synonym: "segmentation cavity" EXACT []
is_a: UBERON:0002553 ! anatomical cavity
relationship: surrounded_by UBERON:0002532 ! epiblast
[Term]
id: UBERON:0000091
name: bilaminar disc
def: "the epiblast and the hypoblast, evolved from the embryoblast" [Wikipedia:Bilaminar_disc]
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0000087 ! inner cell mass
[Term]
id: UBERON:0000092
name: post-embryonic stage
def: "stage succeeding embryo, including mature structure" [UBERON:cjm]
is_a: UBERON:0000105 ! life cycle stage
disjoint_from: UBERON:0000068 ! embryo stage
relationship: part_of UBERON:0000104 ! life cycle
relationship: preceded_by UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0000093
name: sulcus
def: "a depression or fissure in the surface of an organ." [Wikipedia:Sulcus_(anatomy)]
is_a: UBERON:0000464 ! anatomical space
created_by: cjm
creation_date: 2009-04-09T06:23:22Z
[Term]
id: UBERON:0000094
name: membrane organ
def: "Nonparenchymatous organ that primarily consists of dense connective tissue organized into a sheet which interconnects two or more organs, separates two or more body spaces from one another, or surrounds an organ or body part. Examples: interosseous membrane of forearm, obturator membrane, tympanic membrane, fibrous pericardium, fascia lata, dura mater. [FMA]" [FMA:7145]
synonym: "membrane of organ" EXACT []
xref: FMA:7145
is_a: UBERON:0000062 ! organ
created_by: cjm
creation_date: 2009-07-30T05:19:13Z
[Term]
id: UBERON:0000095
name: cardiac neural crest
def: "portion of neural crest that develops from the dorsal neural tube. It overlaps the vagal neural crest and migrates to populate the pharyngeal arches 3, 4 and 6 (producing structures in the head) and to the heart, forming connective tissue that separates the great vessels of the heart. [Wikipedia]" [Wikipedia:Cardiac_neural_crest]
xref: ZFA:0001648
is_a: UBERON:0000479 ! portion of tissue
created_by: cjm
creation_date: 2009-07-30T07:57:38Z
[Term]
id: UBERON:0000100
name: blastopore
def: "Structure around the opening into the archenteron during the embryonic stages of an organism. The distinction between protostomes and deuterostomes is based on the direction in which the mouth (stoma) develops in relation to the blastopore." [Wikipedia:Blastopore]
xref: BTO:0001695
xref: XAO:0000208
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000101
name: lobe of lung
def: "A lung lobe is one of the rounded projections that compose the lung[GO]." [GOC:GO]
synonym: "lung lobe" EXACT []
synonym: "pulminory lobe" EXACT []
xref: FMA:7311
xref: ncithesaurus:Lung_Lobe
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0000102
name: lung vasculature
def: "The lung vasculature is composed of the tubule structures that carry blood or lymph in the lungs[GO]." [GOC:GO]
xref: FMA:73750
is_a: UBERON:0002049 ! vasculature
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0000103
name: life cycle stage boundary
def: "Instant starting or ending a life cycle stage. These can be arbitrary/fiat." [UBERON:cjm]
synonym: "life cycle stage transition event" EXACT []
synonym: "life cycle stage transition instant" EXACT []
xref: span:ProcessBoundary
is_a: UBERON:0000000 ! processual entity
disjoint_from: UBERON:0000105 ! life cycle stage
[Term]
id: UBERON:0000104
name: life cycle
def: "An entire span of an organism's life, commencing with the zygote stage and ending in the death of the organism." [UBERON:cjm]
synonym: "life" EXACT []
synonym: "lifespan" EXACT []
xref: FBdv_root:00000000
xref: ncithesaurus:Life
is_a: UBERON:0000105 ! life cycle stage
[Term]
id: UBERON:0000105
name: life cycle stage
def: "A spatiotemporal region encompassing some part of the life cycle of an organism." [UBERON:cjm]
synonym: "developmental stage" EXACT []
xref: BILS:0000105
xref: EFO:0000399
xref: ncithesaurus:Developmental_Stage
xref: XAO:1000000
xref: ZFS:0100000
is_a: UBERON:0000000 ! processual entity
relationship: has_end UBERON:0000103 ! life cycle stage boundary
relationship: has_start UBERON:0000103 ! life cycle stage boundary
[Term]
id: UBERON:0000106
name: zygote stage
synonym: "one cell stage" RELATED []
xref: BILS:0000106
is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: starts UBERON:0000104 ! life cycle
[Term]
id: UBERON:0000107
name: cleavage stage
def: "The first few specialized divisions of an activated animal egg. // Stage consisting of division of cells in the early embryo. The zygotes of many species undergo rapid cell cycles with no significant growth, producing a cluster of cells the same size as the original zygote. The different cells derived from cleavage are called blastomeres and form a compact mass called the morula. Cleavage ends with the formation of the blastula." [GO:0040016, Wikipedia:Cleavage_(embryo)]
xref: BILS:0000107
xref: EFO:0001290
xref: XAO:1000004
is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000106 ! zygote stage
[Term]
id: UBERON:0000108
name: blastula stage
xref: BILS:0000108
xref: EFO:0001282
xref: XAO:1000003
is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000107 ! cleavage stage
[Term]
id: UBERON:0000109
name: gastrula stage
xref: BILS:0000109
xref: EFO:0001296
xref: FBdv:00005317
xref: XAO:1000005
is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000108 ! blastula stage
[Term]
id: UBERON:0000110
name: neurula stage
def: "The formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system." [GO:0001841]
xref: BILS:0000110
xref: XAO:1000006
is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000109 ! gastrula stage
[Term]
id: UBERON:0000111
name: organogenesis stage
def: "Process by which the ectoderm, endoderm, and mesoderm develop into the internal organs of the organism." [Wikipedia:Organogenesis]
synonym: "segmentation stage" RELATED []
xref: BILS:0000111
is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000068 ! embryo stage
relationship: preceded_by UBERON:0000110 ! neurula stage
[Term]
id: UBERON:0000112
name: juvenile stage
def: "The stage of being a sexually immature adult animal." [XAO:1000010]
xref: BILS:0000112
xref: EFO:0001300
xref: XAO:1000010
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000066 ! fully formed stage
[Term]
id: UBERON:0000113
name: post-juvenile adult stage
alt_id: UBERON:MIAA_0000403-XAO_1000009
def: "The stage of being a sexually mature adult animal." [UBERON:cjm]
synonym: "adult stage" BROAD []
xref: BILS:0000113
xref: MIAA:0000403
xref: ZFS:0000044
is_a: UBERON:0000105 ! life cycle stage
relationship: part_of UBERON:0000066 ! fully formed stage
relationship: preceded_by UBERON:0000112 ! juvenile stage
[Term]
id: UBERON:0000114
name: lung connective tissue
xref: MA:0001782
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue
is_a: UBERON:0003593 ! implied link automatically realized ! thoracic cavity connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0000115
name: lung epithelium
xref: BTO:0001653
xref: MA:0001783
is_a: UBERON:0000483 ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0000116
name: lung saccule
def: "Primitive gas exchange portion of the lung composed of type I and type II cells[GO]." [GO:0060430]
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0000117
name: respiratory tube
def: "A tube in the respiratory tract." [GO:0030323]
is_a: UBERON:0000025 ! tube
intersection_of: UBERON:0000025 ! tube
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0000065 ! respiratory tract
[Term]
id: UBERON:0000118
name: lung bud
def: "Structure derived from foregut that becomes a lung." [GO:0060431, Wikipedia:Lung_buds]
synonym: "primary lung bud" EXACT []
xref: BTO:0001643
is_a: UBERON:0000062 ! organ
relationship: develops_from UBERON:0000925 ! endoderm
[Term]
id: UBERON:0000119
name: cell layer
def: "Portion of tissue, that consists of one or more layers of cells connected to each other by cell junctions" [UBERON:cjm]
synonym: "cell sheath" RELATED []
synonym: "layer of cells" EXACT []
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0000120
name: blood brain barrier
def: "Cell layer consisting of lining cells that separates the central nervous system and the bloodstream. The BBB may consist of endothelial cells or glial cells. An endothelial barrier may have arisen independently several times during evolution. In bichir and lungfish the barrier is formed by brain endothelial cells, while in sturgeon it is formed by a complex perivascular glial sheath, but with no detectable tight junctions." [DOI:10.1002/glia.20642, Wikipedia:Blood-brain_barrier]
synonym: "BBB" RELATED []
synonym: "blood-brain barrier" EXACT []
xref: ncithesaurus:Blood-Brain_Barrier
is_a: UBERON:0000119 ! cell layer
relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid
relationship: adjacent_to UBERON:0000955 ! brain
[Term]
id: UBERON:0000121
name: perineurium
def: "Connective tissue surrounding a fascicle." [Wikipedia:Perineurium]
xref: BTO:0003153
xref: FMA:52585
xref: ncithesaurus:Perineurium
is_a: UBERON:0002384 ! connective tissue
relationship: surrounds UBERON:0001019 ! fascicle
[Term]
id: UBERON:0000122
name: nerve fiber bundle
def: "multi-cell component structure consisting of a cluster of nerve fibers." [UBERON:cjm]
synonym: "funiculus" EXACT []
xref: FBbt:00005099
xref: FMA:76738
is_a: UBERON:0000477 ! anatomical cluster
relationship: has_part UBERON:0001021 ! nerve
[Term]
id: UBERON:0000123
name: endodeurium
def: "a layer of delicate connective tissue that encloses the myelin sheath of a nerve fiber within a funiculus." [Wikipedia:Endodeurium]
xref: FMA:52586
is_a: UBERON:0002384 ! connective tissue
relationship: surrounds UBERON:0001021 ! nerve
[Term]
id: UBERON:0000124
name: epineurium
def: "outermost layer of connective tissue surrounding a peripheral nerve. It includes the blood vessels supplying the nerve. It consists of adipose tissue and fibrocollagenous tissues." [Wikipedia:Epineurium]
xref: BTO:0003154
xref: FMA:12234
xref: ncithesaurus:Epineurium
is_a: UBERON:0002384 ! connective tissue
relationship: surrounds UBERON:0002003 ! peripheral nerve
[Term]
id: UBERON:0000125
name: neural nucleus
def: "Anatomical structure consisting of a discrete aggregate of neuronal soma[GO]." [GO:0048857, GO_REF:0000021, Wikipedia:Nucleus_(neuroanatomy)]
synonym: "nucleus" BROAD []
synonym: "nucleus of neuraxis" RELATED []
xref: FMA:83686
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0000126
name: cranial nerve nucleus
def: "collection of neurons (gray matter) in the brain stem that is associated with one or more cranial nerves." [Wikipedia:Cranial_nerve_nucleus]
synonym: "Nucleus of cranial nerve" EXACT []
synonym: "nucleus of cranial nerve" EXACT []
xref: FMA:54501
is_a: UBERON:0002308 ! nucleus of brain
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0000127
name: facial nucleus
synonym: "facial nerve nucleus" EXACT []
xref: FMA:54572
xref: ncithesaurus:Facial_Nerve_Nucleus
is_a: UBERON:0000126 ! cranial nerve nucleus
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0001647 ! facial nerve
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0000128
name: olivary body
def: "prominent oval structure in the medulla oblongata, present in pairs, the lower portion of the brainstem. They contain the olivary nuclei" [Wikipedia:Olivary_body]
synonym: "olive" RELATED []
synonym: "olive body" EXACT []
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0000151
name: pectoral fin
def: "The paired pectoral fins are located on each side, usually just behind the operculum, and are homologous to the forelimbs of tetrapods." [Wikipedia:Pectoral_fin#Fins]
xref: TAO:0001161
xref: ZFA:0001161
is_a: UBERON:0002534 ! fin
[Term]
id: UBERON:0000152
name: pelvic fin
def: "The paired pelvic or ventral fins are located ventrally below the pectoral fins. They are homologous to the hindlimbs of tetrapods. The pelvic fin assists the fish in going up or down through the water, turning sharply, and stopping quickly." [Wikipedia:Pectoral_fin#Fins]
xref: TAO:0001184
xref: ZFA:0001184
is_a: UBERON:0002534 ! fin
[Term]
id: UBERON:0000153
name: anterior region of body
is_a: UBERON:0002100 ! trunk
[Term]
id: UBERON:0000154
name: posterior region of body
is_a: UBERON:0002100 ! trunk
[Term]
id: UBERON:0000155
name: theca cell layer
def: "A layer of the ovarian follicles. They appear as the follicles become tertiary follicles. The theca folliculi are responsible for the production of testosterone from androstenedione in females, and indirectly the production of estrogens by supplying the neighboring granulosa cells with androstenedione that can then be used as a substrate for aromatase." [Wikipedia:Theca_of_follicle]
synonym: "layer of theca cells" EXACT []
synonym: "theca cell layer of ovarian follicle" EXACT []
synonym: "theca folliculi" RELATED []
synonym: "theca of follicle" EXACT []
xref: FMA:18656
xref: TAO:0001113
xref: ZFA:0001113
is_a: UBERON:0000119 ! cell layer
relationship: part_of UBERON:0001305 ! follicle of ovary
[Term]
id: UBERON:0000156
name: theca externa
def: "The theca externa is the outer layers of the theca folliculi. It contains abundant collagen and is mainly supportive." [Wikipedia:Theca_externa#Theca_externa]
xref: BTO:0002852
xref: FMA:18657
is_a: UBERON:0000158 ! membranous layer
relationship: part_of UBERON:0000155 ! theca cell layer
relationship: surrounds UBERON:0000157 ! theca interna
[Term]
id: UBERON:0000157
name: theca interna
def: "Theca interna cells express receptors for luteinizing hormone, which when activated will stimulate the production of androstenedione from cholesterol by the enzyme desmolase. Androstenedione ultimately gives the granulosa cells the precursor substrate for estrogen manufacturing." [Wikipedia:Theca_externa#Theca_interna]
xref: BTO:0002851
xref: FMA:18658
is_a: UBERON:0000158 ! membranous layer
relationship: part_of UBERON:0000155 ! theca cell layer
[Term]
id: UBERON:0000158
name: membranous layer
xref: FMA:82500
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0000159
name: anal canal
def: "Organ with organ cavity which is continuous proximally with the rectum and distally terminates with the anus. Examples: There is only one anal canal. // A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages. // a feature of the male tail, caudal to the proctodeum, where the vas deferens and the intestine open out jointly near the tail tip to discharge their contents." [WA:dh, Wikipedia:Anal_canal]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adult alimentary canal" RELATED []
synonym: "Anal canal" EXACT []
synonym: "anal canal" EXACT []
synonym: "Anal canal viewed anatomically" EXACT []
synonym: "anal canal viewed anatomically" EXACT []
synonym: "anal pad" RELATED []
synonym: "anal region" EXACT []
synonym: "Anatomical anal canal" EXACT []
synonym: "anatomical anal canal" EXACT []
synonym: "anus" RELATED []
synonym: "cloaca" RELATED []
synonym: "cloacal chamber" RELATED []
synonym: "mesenteron" RELATED []
xref: BTO:0001978
xref: EFO:0000847
xref: EHDAA:2931
xref: FMA:15703
xref: galen:AnalCanal
xref: HOG:0000395
xref: MA:0000330
xref: MAT:0000042
xref: MIAA:0000042
xref: ncithesaurus:Anal_Canal
xref: TAO:0000330
xref: ZFA:0000330
is_a: UBERON:0002075 ! viscus
relationship: part_of UBERON:0001046 ! hindgut
relationship: part_of UBERON:0001353 ! anal part of perineum
[Term]
id: UBERON:0000160
name: intestine
alt_id: UBERON:FBbt_00005785-FMA_15703-FMA_7199-MA_0000328-MA_0000330-MIAA_0000042-MIAA_0000043-WBbt_0005772-WBbt_0005774-XAO_0000129-XAO_0000244-ZFA_0000330-ZFA_0001338
def: "Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine." [GOC:GO, Wikipedia:Intestine]
subset: uberon_slim
synonym: "bowel" EXACT []
xref: BTO:0000648
xref: EFO:0000834
xref: FMA:7199
xref: galen:Intestine
xref: HOG:0000056
xref: MA:0000328
xref: MIAA:0000043
xref: ncithesaurus:Intestine
xref: TAO:0001338
xref: WBbt:0005772
xref: XAO:0000129
xref: ZFA:0001338
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001555 ! gut
[Term]
id: UBERON:0000161
name: orifice
def: "Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis." [FMA:3724]
synonym: "anatomical orifice" EXACT [FMA:3724]
xref: FMA:3724
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0000162
name: cloaca
def: "Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca]
comment: Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP]
synonym: "cloacal chamber" RELATED []
synonym: "vent" RELATED []
xref: AAO:0000095
xref: HOG:0001186
xref: ncithesaurus:Cloaca
xref: WBbt:0005774
xref: XAO:0000244
xref: ZFA:0000330
is_a: UBERON:0000161 ! orifice
[Term]
id: UBERON:0000163
name: embryonic cloaca
def: "Structure in the development of the urinary and reproductive organs." [Wikipedia:Cloaca_(embryology)]
comment: compare UBERON:0000162 cloaca
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0003064 ! intermediate mesoderm
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0000164
name: urogenital sinus
def: "part of the human body only present in the development of the urinary and reproductive organs. It is the ventral part of the cloaca, formed after the cloaca separates from the rectum. It eventually becomes, among other things, the bladder." [Wikipedia:Urogenital_sinus]
xref: HOG:0000414
xref: ncithesaurus:Urogenital_Sinus
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_from UBERON:0003064 ! intermediate mesoderm
[Term]
id: UBERON:0000165
name: mouth
def: "First portion of the alimentary canal that receives food and begins digestion by mechanically breaking up the solid food particles into smaller pieces and mixing them with saliva. The oral mucosa is the mucous membrane epithelium lining the inside of the mouth." [Wikipedia:Mouth]
subset: uberon_slim
synonym: "adult mouth" EXACT []
xref: BTO:0001090
xref: EFO:0000825
xref: FMA:49184
xref: GAID:75
xref: HOG:0000812
xref: MA:0002474
xref: MAT:0000038
xref: MIAA:0000038
xref: OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA
xref: TAO:0000547
xref: XAO:0003029
xref: ZFA:0000547
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_from UBERON:0000930 ! stomodeum
relationship: part_of UBERON:0001555 ! gut
[Term]
id: UBERON:0000166
name: oral opening
def: "The opening of the head through which food passes into the body." [NLM:mouth]
subset: uberon_slim
synonym: "adult mouth" RELATED []
synonym: "mouth" RELATED []
synonym: "Oral part of face" EXACT []
synonym: "oral part of face" EXACT []
synonym: "Oral region" EXACT []
synonym: "oral region" EXACT []
synonym: "Subdivision of mouth" EXACT []
synonym: "subdivision of mouth" EXACT []
xref: EHDAA:542
xref: FMA:59806
xref: HOG:0000280
xref: MA:0000341
xref: TAO:0000590
xref: ZFA:0000590
is_a: UBERON:0000161 ! orifice
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0000167
name: oral cavity
subset: uberon_slim
synonym: "cavity of mouth" EXACT []
xref: AAO:0000053
xref: EFO:0001975
xref: EHDAA:6970
xref: FMA:20292
xref: HAO:0000669
xref: HOG:0000188
xref: ncithesaurus:Oral_Cavity
xref: TAO:0001027
xref: WBbt:0005255
xref: XAO:0000126
xref: ZFA:0001027
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0000168
name: segment of colon
xref: FMA:222905
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0000170
name: pair of lungs
synonym: "Lungs" EXACT []
synonym: "lungs" EXACT []
synonym: "Lungs pair" EXACT []
synonym: "lungs pair" EXACT []
synonym: "Pair of lungs" EXACT []
synonym: "Set of lungs" EXACT []
synonym: "set of lungs" EXACT []
xref: BTO:0000763
xref: EFO:0000934
xref: FMA:68877
xref: ncithesaurus:Lung
xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA
relationship: has_part UBERON:0002167 ! right lung
relationship: has_part UBERON:0002168 ! left lung
[Term]
id: UBERON:0000171
name: respiration organ
def: "Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms." [GO:0007585]
synonym: "breathing organ" EXACT []
synonym: "gas exchange organ" RELATED []
synonym: "respiratory organ" EXACT []
is_a: UBERON:0000062 ! organ
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0000172
name: vomit
def: "Vomit is a bodily fluid consisting of the expulsed contents of the stomach of an organism disgorged through the mouth or nose." [ENVO:00000338]
xref: ENVO:00000338
xref: OpenCyc:Mx4rvViQTJwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000173
name: amniotic fluid
def: "Amniotic fluid is a bodily fluid consisting of watery liquid surrounding and cushioning a growing fetus within the amnion. It allows the fetus to move freely without the walls of the uterus being too tight against its body. Buoyancy is also provided." [ENVO:02000021]
xref: BTO:0000068
xref: ENVO:02000021
xref: HOG:0001267
xref: MA:0002893
xref: ncithesaurus:Amniotic_Fluid
is_a: UBERON:0000463 ! portion of organism substance
relationship: surrounds UBERON:0000922 ! embryo
[Term]
id: UBERON:0000174
name: excreta
alt_id: UBERON:0000324
alt_id: UBERON:BTO_0000491-FMA_9674
def: "Excreta are bodily fluids consisting of waste matter, such as sweat or feces, discharged from the body." [ENVO:02000022]
synonym: "excretion" EXACT []
xref: BTO:0000491
xref: ENVO:02000022
xref: FMA:9674
xref: galen:Excretion
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000175
name: pleural effusion
def: "Pleural effusion is a bodily fluid that is produced in exess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation." [ENVO:02000033]
xref: ENVO:02000033
xref: ncithesaurus:Pleural_Effusion
xref: OpenCyc:Mx4rLaTGCK2TEduAAAAOpmP6tw
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000176
name: oronasal secretion
def: "Oronasal secretion is a bodily fluid secreted from the body via the mouth or nose." [ENVO:02000035]
xref: ENVO:02000035
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000177
name: pus
def: "Pus is a bodily fluid consisting of a whitish-yellow or yellow substance produced during inflammatory responses of the body that can be found in regions of pyogenic bacterial infections. Pus is produced from the dead and living cells which travel into the intercellular spaces around the affected cells." [ENVO:02000038]
xref: ENVO:02000038
xref: ncithesaurus:Pus
xref: OpenCyc:Mx4rvVjG6ZwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000178
name: blood
def: "Circulating body substance which consists of blood plasma and hemoglobin-carrying red blood cells. Excludes blood analogues (see UBERON:0000179 haemolymphatic fluid)." [FMA:9670, Wikipedia:Blood]
subset: uberon_slim
synonym: "blood" EXACT []
synonym: "portion of blood" EXACT []
xref: BTO:0000089
xref: EFO:0000296
xref: ENVO:02000027
xref: FMA:9670
xref: galen:Blood
xref: HOG:0000224
xref: MA:0000059
xref: MIAA:0000315
xref: ncithesaurus:Blood
xref: OpenCyc:Mx4rvVjI8JwpEbGdrcN5Y29ycA
xref: TAO:0000007
xref: XAO:0000124
xref: ZFA:0000007
is_a: UBERON:0000179 ! haemolymphatic fluid
relationship: part_of UBERON:0002390 ! hematopoietic system
[Term]
id: UBERON:0000179
name: haemolymphatic fluid
def: "Circulating fluid that is part of the hemolymphoid system. Blood, lymph, interstitial fluid or its analogs." []
synonym: "blood or blood analog" RELATED []
is_a: UBERON:0000463 ! portion of organism substance
intersection_of: UBERON:0000463 ! portion of organism substance
intersection_of: part_of UBERON:0002390 ! hematopoietic system
created_by: cjm
creation_date: 2009-04-08T04:38:19Z
[Term]
id: UBERON:0000200
name: gyrus
def: "A ridge on the cerebral cortex. It is generally surrounded by one or more sulci." [Wikipedia:Gyrus]
is_a: UBERON:0000064 ! organ part
created_by: cjm
creation_date: 2009-04-09T07:21:39Z
[Term]
id: UBERON:0000201
name: endothelial blood brain barrier
def: "A blood brain barrier that is composed of endothelial cells." [UBERON:cjm]
is_a: UBERON:0000120 ! blood brain barrier
created_by: cjm
creation_date: 2009-04-10T08:15:44Z
[Term]
id: UBERON:0000202
name: glial blood brain barrier
def: "A blood brain barrier composed of glial cells." [UBERON:cjm]
xref: FBbt:00007091
is_a: UBERON:0000120 ! blood brain barrier
created_by: cjm
creation_date: 2009-04-10T08:42:24Z
[Term]
id: UBERON:0000203
name: pallium
def: "Roof of the telencephalon. In humans the cerebrum has three parts: the archipallium, the paleopallium and the neopallium. The developing telencephalon or forebrain is divided into pallium and subpallium. In amphibians, the cerebrum includes archipallium, paleopallium and some of the basal nuclei. Reptiles first developed a neopallium, which continued to develop in the brains of more recent species to become the neocortex of humans and Old World monkeys. In fish, the archipallium is the largest part of the cerebrum. Some researchers suggest the early archipallium gave rise to the human hippocampus." [GO:0021543, Wikipedia:Pallium_(neuroanatomy)]
xref: ZFA:0007007
relationship: part_of UBERON:0001893 ! telencephalon
created_by: cjm
creation_date: 2009-04-18T12:03:09Z
[Term]
id: UBERON:0000204
name: subpallium
def: "Base region of the telencephalon." [GO:0021544]
synonym: "ventral telencephalon" EXACT [ZFA:0000304]
xref: BTO:0003401
xref: ZFA:0000304
relationship: part_of UBERON:0001893 ! telencephalon
created_by: cjm
creation_date: 2009-04-18T12:12:27Z
[Term]
id: UBERON:0000205
name: echinoderm gill
def: "Respiration in the Echinodermata (includes starfish and sea urchins) is carried out using a very primitive version of gills called papulli. These are thin protuberances on the surface of the body containing diverticula of the water vascular system." []
is_a: UBERON:0002535 ! gill
created_by: cjm
creation_date: 2009-04-18T01:13:57Z
[Term]
id: UBERON:0000206
name: pharyngeal gill
def: "Gills of vertebrates are developed in the walls of the pharynx along a series of gill slits opening to the exterior. In fish, the gills are located on both sides of the pharynx. Gills are made of filaments which help increase surface area for oxygen exchange. In bony fish, the gills are covered by a bony cover called an operculum. When a fish breathes, it opens its mouth at regular times and draws in a mouthful of water. It then draws the sides of its throat together, forcing the water through the gill openings. The water passes over the gills on the outside. Valves inside the mouth keep the water from escaping through the mouth again. The operculum can be very important in adjusting the pressure of water inside of the pharynx to allow proper ventilation of the gills. Lampreys and sharks lack an operculum, they have multiple gill openings. Also, they must use different methods to force water over the gills. In sharks and rays, this ventilation of the gills is achieved either by the use of spiracles or ram ventilation (ventilation by constantly swimming). Although some animals use this method it is much better for animals to use a spiracle because they are less susceptible to injury." [Wikipedia:Gill#Vertebrate_gills]
is_a: UBERON:0002535 ! gill
relationship: adjacent_to UBERON:0001042 ! pharynx
created_by: cjm
creation_date: 2009-04-18T01:18:17Z
[Term]
id: UBERON:0000207
name: acellular lens
def: "A chitinous extracellular secretion of the four underlying cone cells and the pigment cells." [GO:0048058]
synonym: "compound eye corneal lens" EXACT [GO:0048058]
synonym: "invertebrate lens" RELATED []
xref: FBbt:00004199
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0000965 ! lens
created_by: cjm
creation_date: 2009-04-18T01:35:32Z
[Term]
id: UBERON:0000208
name: cellular lens
synonym: "vertebrate lens" RELATED []
is_a: UBERON:0000965 ! lens
created_by: cjm
creation_date: 2009-04-18T01:37:39Z
[Term]
id: UBERON:0000209
name: tetrapod frontal bone
alt_id: UBERON:FMA_9613-MA_0001469-ZFA_0000486
def: "In humans: A bone resembling a cockleshell in two portions the squama frontalis, corresponding with the region of the forehead, and an orbital or horizontal portion, the pars orbitalis, which enters into the formation of the roofs of the orbital and nasal cavities. In teleost fish, where it is called the parietal bone: Paired dermal bone that covers the hind part of the cranium, overlapping the dorsal edge of the sphenotic, pterotic, epiotic and the anterior edge of the supraoccipital. The parietal are overlapped anteriorly by the frontal." [Wikipedia:Frontal_bone, ZFA:0000486]
comment: The frontal bone in teleost fish is the homolog of the parietal bone in vertebrates
synonym: "frontal bone" NARROW [FMA:52734]
synonym: "parietal bone" NARROW [TAO:0000486]
synonym: "post parietal" RELATED [ZFA:0000486]
synonym: "teleost parietal bone" EXACT [TAO:0000486]
xref: FMA:52734
xref: GAID:226
xref: MA:0001466
xref: TAO:0000486
xref: ZFA:0000486
is_a: UBERON:0002514 ! intramembranous bone
relationship: part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0000210
name: tetrapod parietal bone
alt_id: UBERON:FMA_52734-MA_0001466-ZFA_0000514
def: "In humans: bone forming side and roof of cranium. Each bone is irregularly quadrilateral in form, and has two surfaces, four borders, and four angles. In teleost fish, where it is called the frontal bone: Large elongated paired dermal bones that roof the cranium and bear part of the supraorbital canal. The frontal bones cover the upper edge of the lateral ethmoid, orbitosphenoid and pterosphenoids and overlaps the parietal bone posteriorly." [Wikipedia:Parietal_bone, ZFA:0000514]
comment: This class was created automatically from a combination of ontologies
synonym: "frontal bone" NARROW [TAO:0000514]
synonym: "parietal bone" NARROW [FMA:9613]
synonym: "teleost frontal bone" NARROW [TAO:0000514]
xref: FMA:9613
xref: GAID:229
xref: MA:0001469
xref: TAO:0000514
xref: ZFA:0000514
is_a: UBERON:0002514 ! intramembranous bone
relationship: part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0000211
name: ligament
def: "Short band of tough fibrous dense regular connective tissue composed mainly of long, stringy collagen fibers. Ligaments connect bones to other bones to form a joint." [Wikipedia:Ligament]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "articular ligament" EXACT [Wikipedia:Ligament]
synonym: "fibrous ligament" EXACT [Wikipedia:Ligament]
synonym: "true ligament" EXACT [Wikipedia:Ligament]
xref: EFO:0001966
xref: FMA:21496
xref: GAID:118
xref: galen:Ligament
xref: HOG:0001272
xref: MA:0000113
xref: ncithesaurus:Ligament
xref: OpenCyc:Mx4rvVjqpZwpEbGdrcN5Y29ycA
xref: TAO:0001682
xref: ZFA:0001675
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0000212
name: toilet claw
def: "specialized claw or nail on the foot of certain primates, used for personal grooming." [Wikipedia:Toilet-claw]
is_a: UBERON:0001705 ! nail
created_by: cjm
creation_date: 2009-05-19T08:19:58Z
[Term]
id: UBERON:0000301
name: amniotic cavity
alt_id: UBERON:BTO_0000025-FMA_63941
xref: BTO:0000025
xref: FMA:63941
xref: HOG:0000855
xref: ncithesaurus:Amniotic_Cavity
is_a: UBERON:0000464 ! anatomical space
relationship: has_part UBERON:0000173 ! amniotic fluid
[Term]
id: UBERON:0000303
name: adductor longus
alt_id: UBERON:BTO_0000029-FMA_22441
xref: BTO:0000029
xref: FMA:22441
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0000304
name: tendon sheath
alt_id: UBERON:BTO_0000051-FMA_76715
def: "A layer of membrane around a tendon. It has 2 layers: synovial sheath + fibrous tendon sheath" [Wikipedia:Tendon_sheath]
comment: TODO: add layer relations
xref: BTO:0000051
xref: FMA:76715
is_a: UBERON:0000479 ! portion of tissue
relationship: has_part UBERON:0002018 ! synovial membrane
relationship: surrounds UBERON:0000043 ! tendon
[Term]
id: UBERON:0000305
name: amnion
alt_id: UBERON:BTO_0000065-FMA_80223
def: "A membrane building the amniotic sac that surrounds and protects an embryo. It is developed in reptiles, birds, and mammals, which are hence called “Amniota”; but not in amphibians and fish (Ichthyopsida), which are consequently termed “Anamniota”. The primary function of this is the protection of the embryo for its development. It stems from parts of the mesoderm on the outer side and the ectoderm on the inner side[WP]." [Wikipedia:Amnion]
xref: BTO:0000065
xref: FMA:80223
xref: HOG:0000721
xref: ncithesaurus:Amnion
is_a: UBERON:0000478 ! extraembryonic structure
relationship: surrounds UBERON:0000922 ! embryo
[Term]
id: UBERON:0000307
name: blastula
alt_id: UBERON:BTO_0000128-FMA_83041
def: "An early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula]
comment: TODO - check relationship with epiblast
synonym: "blastosphere" RELATED [Wikipedia:Blastula]
synonym: "Blastula" EXACT [FMA:83041]
xref: BTO:0000128
xref: FMA:83041
xref: OGEM:000006
xref: OGES:000003
xref: OGES:000016
xref: OGES:000021
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000309
name: body wall
alt_id: UBERON:BTO_0000139-FMA_10427
synonym: "Trunk wall" EXACT [FMA:10427]
synonym: "Wall of trunk" EXACT [FMA:10427]
xref: BTO:0000139
xref: FMA:10427
xref: galen:BodyWall
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0000310
name: breast
alt_id: UBERON:BTO_0000149-FMA_9601
synonym: "mammary part of chest" EXACT [FMA:9601]
synonym: "mammary region" EXACT [FMA:9601]
xref: BTO:0000149
xref: FMA:9601
xref: galen:Breast
xref: ncithesaurus:Breast
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0000311
name: extensor
alt_id: UBERON:BTO_0000151-FMA_74561
xref: BTO:0000151
xref: FMA:74561
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000312
name: cambium
alt_id: UBERON:BTO_0000170-FMA_234358
synonym: "Cambial layer" EXACT [FMA:234358]
synonym: "Cambium" EXACT [FMA:234358]
synonym: "Cambium layer of periosteum" EXACT [FMA:234358]
synonym: "Inner cambial layer of periosteum" EXACT [FMA:234358]
xref: BTO:0000170
xref: EFO:0001016
xref: FMA:234358
is_a: UBERON:0000064 ! organ part
relationship: constitutional_part_of UBERON:0002515 ! periosteum
[Term]
id: UBERON:0000313
name: tibial cartilage
alt_id: UBERON:BTO_0000207-FMA_33923
synonym: "Tibial cartilage" EXACT [FMA:33923]
xref: BTO:0000207
xref: FMA:33923
is_a: UBERON:0002384 ! connective tissue
[Term]
id: UBERON:0000314
name: cecum mucosa
alt_id: UBERON:BTO_0000213-FMA_14998
synonym: "Cecal mucosa" EXACT [FMA:14998]
synonym: "Cecum mucosa" EXACT [FMA:14998]
xref: BTO:0000213
xref: FMA:14998
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000317 ! implied link automatically realized ! colonic mucosa
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001153 ! cecum
[Term]
id: UBERON:0000315
name: subarachnoid space
alt_id: UBERON:BTO_0000230-FMA_83716
xref: BTO:0000230
xref: FMA:83716
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0000316
name: cervical mucus
alt_id: UBERON:BTO_0000242-FMA_83689
def: "Thick acidic mucus that blocks the cervical os after mestruation[WP]. This 'infertile' mucus blocks spermatozoa from entering the uterus." [Wikipedia:Cervix#Cervical_mucus]
xref: BTO:0000242
xref: FMA:83689
is_a: UBERON:0000912 ! mucus
[Term]
id: UBERON:0000317
name: colonic mucosa
alt_id: UBERON:0003347
alt_id: UBERON:BTO_0000271-FMA_14984
synonym: "colon mucosa" EXACT [FMA:14984]
synonym: "colonic mucous membrane" EXACT [FMA:14984]
synonym: "mucosa of colon" EXACT [FMA:14984]
xref: BTO:0000271
xref: EMAPA:27375
xref: FMA:14984
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0001207 ! implied link automatically realized ! mucosa of large intestine
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0000319
name: cytotrophoblast
alt_id: UBERON:BTO_0000322-FMA_83039
synonym: "Cellular trophoblast" EXACT [FMA:83039]
synonym: "Cytotrophoblastic cell" EXACT [FMA:83039]
xref: BTO:0000322
xref: FMA:83039
xref: ncithesaurus:Cytotrophoblast
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000320
name: duodenal mucosa
alt_id: UBERON:BTO_0000367-FMA_14942
synonym: "Doudenal mucosa" EXACT [FMA:14942]
synonym: "Duodenal mucosa" EXACT [FMA:14942]
synonym: "Duodenal mucous membrane" EXACT [FMA:14942]
xref: BTO:0000367
xref: FMA:14942
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000322
name: cerebral lobe
alt_id: UBERON:BTO_0000445-FMA_77800
synonym: "Cerebral lobes" EXACT [FMA:77800]
synonym: "Cerebral lobes set" EXACT [FMA:77800]
xref: BTO:0000445
xref: FMA:77800
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000323
name: fetus
alt_id: UBERON:BTO_0000449-FMA_63919
comment: TODO - check fetus/embryo. WP: An embryo (irregularly from Greek: ἔμβρυον, plural ἔμβρυα, lit. "that which grows," from en- "in" + bryein "to swell, be full"; the proper Latinate form would be embryum) is a multicellular diploid eukaryote in its earliest stage of development, from the time of first cell division until birth, hatching, or germination. In humans, it is called an embryo until about eight weeks after fertilization (i.e. ten weeks LMP), and from then it is instead called a fetus.
xref: BTO:0000449
xref: EFO:0001323
xref: EV:0300011
xref: FMA:63919
xref: ncithesaurus:Fetus
xref: OGES:000023
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000325
name: gastric gland
alt_id: UBERON:BTO_0000503-FMA_14919
xref: BTO:0000503
xref: FMA:14919
is_a: UBERON:0002530 ! gland
[Term]
id: UBERON:0000326
name: pancreatic juice
alt_id: UBERON:BTO_0000504-FMA_62973
def: "Pancreatic juice is slightly alkaline and contains numerous enzymes and inactive enzyme precursors including alpha-amylase, chymotrypsinogen, lipase, procarboxypeptidase, proelastase, prophospholipase A2, ribonuclease, and trypsinogen. Its high concentration of bicarbonate ions helps to neutralize the acid from the stomach." [GO:0030157]
xref: BTO:0000504
xref: FMA:62973
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000328
name: gut wall
alt_id: UBERON:BTO_0000547-FMA_45653
synonym: "Gut wall" EXACT [FMA:45653]
xref: BTO:0000547
xref: FMA:45653
is_a: UBERON:0000477 ! anatomical cluster
relationship: constitutional_part_of UBERON:0001555 ! gut
relationship: systemic_part_of UBERON:0001555 ! gut
[Term]
id: UBERON:0000329
name: hair root
alt_id: UBERON:BTO_0000555-FMA_70730
def: "The root of the hair ends in an enlargement, the hair bulb, which is whiter in color and softer in texture than the shaft, and is lodged in a follicular involution of the epidermis called the hair follicle. [Wikipedia]." [Wikipedia:Hair_root]
synonym: "Root of hair" EXACT [FMA:70730]
xref: BTO:0000555
xref: FMA:70730
xref: ncithesaurus:Hair_Root
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001037 ! hair
[Term]
id: UBERON:0000331
name: ileal mucosa
alt_id: UBERON:BTO_0000619-FMA_14956
synonym: "Ileal mucosa" EXACT [FMA:14956]
synonym: "Ileal mucous membrane" EXACT [FMA:14956]
synonym: "Ileum mucosa" EXACT [FMA:14956]
xref: BTO:0000619
xref: FMA:14956
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0001204 ! implied link automatically realized ! mucosa of small intestine
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002116 ! ileum
[Term]
id: UBERON:0000332
name: yellow bone marrow
alt_id: UBERON:BTO_0000635-FMA_74596
xref: BTO:0000635
xref: FMA:74596
is_a: UBERON:0002371 ! bone marrow
[Term]
id: UBERON:0000333
name: intestinal gland
alt_id: UBERON:BTO_0000640-FMA_15052
comment: TODO check UBERON:0001983
synonym: "Glandula intestinalis" EXACT [FMA:15052]
xref: BTO:0000640
xref: FMA:15052
is_a: UBERON:0002530 ! gland
is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001242 ! intestinal mucosa
relationship: part_of UBERON:0001242 ! intestinal mucosa
[Term]
id: UBERON:0000341
name: throat
alt_id: UBERON:BTO_0000828-FMA_228738
xref: BTO:0000828
xref: FMA:228738
xref: ncithesaurus:Throat
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000344
name: mucosa
alt_id: UBERON:BTO_0000886-FMA_85355
def: "A lining of mostly endodermal origin, covered in epithelium, which is involved in absorption and secretion. They line various body cavities that are exposed to the external environment and internal organs. It is at several places continuous with skin: at the nostrils, the lips, the ears, the genital area, and the anus. The sticky, thick fluid secreted by the mucous membranes and gland is termed mucus. The term mucous membrane refers to where they are found in the body and not every mucous membrane secretes mucus[WP]" [Wikipedia:Mucous_membrane]
comment: TODO - check - mucosa vs region of mucosa
synonym: "Mucosa of organ" EXACT [FMA:85355]
synonym: "Mucous membrane" EXACT [FMA:85355]
synonym: "Organ mucosa" EXACT [FMA:85355]
xref: BTO:0000886
xref: FMA:85355
xref: ncithesaurus:Mucosa
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000345
name: myelin
alt_id: UBERON:BTO_0000894-FMA_62977
xref: BTO:0000894
xref: FMA:62977
xref: ncithesaurus:Myelin
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000346
name: myelin membrane
alt_id: UBERON:BTO_0000895-FMA_73417
comment: BTO has def The multilamellar myelin membrane is a specisalised lipid-rich domain of the glial cell plasma membrane. FMA has primary term name Myelinated plasma membrane of Schwann cell
synonym: "Myelin membrane" EXACT [FMA:73417]
xref: BTO:0000895
xref: FMA:73417
is_a: UBERON:0000470 ! cell part
relationship: has_part UBERON:0000345 ! myelin
[Term]
id: UBERON:0000347
name: myelin sheath
alt_id: UBERON:BTO_0000900-FMA_62983
xref: BTO:0000900
xref: FMA:62983
xref: GO:0043209
xref: ncithesaurus:Myelin_Sheath
is_a: UBERON:0000470 ! cell part
relationship: has_part UBERON:0000345 ! myelin
[Term]
id: UBERON:0000348
name: ophthalmic nerve
alt_id: UBERON:BTO_0000926-FMA_52621
synonym: "First division of fifth cranial nerve" EXACT [FMA:52621]
synonym: "First division of trigeminal nerve" EXACT [FMA:52621]
synonym: "Nervus ophthalmicus (V1)" EXACT [FMA:52621]
synonym: "Nervus ophthalmicus (Va)" EXACT [FMA:52621]
synonym: "Ophthalmic division [V1]" EXACT [FMA:52621]
synonym: "Ophthalmic division [Va]" EXACT [FMA:52621]
synonym: "Ophthalmic division of fifth cranial nerve" EXACT [FMA:52621]
synonym: "Ophthalmic division of trigeminal nerve (V1)" EXACT [FMA:52621]
synonym: "Ophthalmic division of trigeminal nerve (Va)" EXACT [FMA:52621]
synonym: "Ophthalmic nerve [V1]" EXACT [FMA:52621]
synonym: "Ophthalmic nerve [Va]" EXACT [FMA:52621]
xref: BTO:0000926
xref: FMA:52621
xref: ncithesaurus:Ophthalmic_Nerve
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0001021 ! nerve
relationship: branch_of UBERON:0001645 ! trigeminal nerve
[Term]
id: UBERON:0000349
name: limbic system
alt_id: UBERON:BTO_0000928-FMA_242000
def: "A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. [BirnLex]. including the hippocampus, amygdala, anterior thalamic nuclei, and limbic cortex, which support a variety of functions including emotion, behavior, long term memory, and olfaction [Wikipedia]." [BIRNLEX:Limbic_system]
comment: obsoletion recommended. The current part_of children were chosen as the intersection of what is stated in wikipedia and in the FMA. NIF: We are including Limbic System because it is still used by neuroscientists and others, but as a data annotation term, it is very poor because it is not a clearly defined entity.
xref: BTO:0000928
xref: FMA:242000
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0000351
name: nuchal ligament
alt_id: UBERON:BTO_0000952-FMA_13427
synonym: "Ligament of neck" EXACT [FMA:13427]
synonym: "Nuchal ligament" EXACT [FMA:13427]
xref: BTO:0000952
xref: FMA:13427
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0000353
name: parenchyma
alt_id: UBERON:BTO_0000999-FMA_45732
def: "functional part of an organ in the body. This is in contrast to the stroma, which refers to the structural tissue of organs, being exactly, connective tissues. Early in development the mammalian embryo has three distinct layers: ectoderm (external layer), endoderm (internal layer) and in between those two layers the middle layer or mesoderm. The parenchyma of most organs is of ectodermal (brain, skin) or endodermal origin (lungs, gastrointestinal tract, liver, pancreas). The parenchyma of a few organs (spleen, kidneys, heart) is of mesodermal origin. The stroma of all organs is of mesodermal origin[WP]." [Wikipedia:Parenchyma]
xref: BTO:0000999
xref: FMA:45732
xref: ncithesaurus:Parenchyma
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000355
name: pharyngeal mucosa
alt_id: UBERON:0003344
alt_id: UBERON:BTO_0001047-FMA_55031
synonym: "Mucous membrane of pharynx" EXACT [FMA:55031]
synonym: "Pharyngeal mucosa" EXACT [FMA:55031]
xref: BTO:0001047
xref: EMAPA:26957
xref: EMAPA:26965
xref: FMA:55031
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0000358
name: blastocyst
alt_id: UBERON:BTO_0001099-FMA_83041
def: "The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]." [GO:0001824]
synonym: "Blastula" EXACT [FMA:83041]
xref: BTO:0001099
xref: EFO:0000295
xref: FMA:83041
xref: ncithesaurus:Blastocyst
xref: OGEM:000006
xref: OGES:000003
xref: OGES:000016
xref: OGES:000021
is_a: UBERON:0002050 ! embryonic structure
relationship: has_part UBERON:0000087 ! inner cell mass
[Term]
id: UBERON:0000359
name: preputial gland
alt_id: UBERON:BTO_0001111-FMA_71652
synonym: "Preputial glands" EXACT [FMA:71652]
synonym: "Preputial glands set" EXACT [FMA:71652]
xref: BTO:0001111
xref: FMA:71652
xref: ncithesaurus:Prepucial_Gland_MMHCC
is_a: UBERON:0002530 ! gland
[Term]
id: UBERON:0000360
name: rectal gland
alt_id: UBERON:BTO_0001157-FMA_15724
xref: BTO:0001157
xref: FMA:15724
is_a: UBERON:0002530 ! gland
is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0000361
name: red bone marrow
alt_id: UBERON:BTO_0001160-FMA_74595
xref: BTO:0001160
xref: FMA:74595
is_a: UBERON:0002371 ! bone marrow
[Term]
id: UBERON:0000362
name: renal medulla
alt_id: UBERON:BTO_0001167-FMA_86327
synonym: "Renal medullae" EXACT [FMA:86327]
synonym: "Renal medullae set" EXACT [FMA:86327]
xref: BTO:0001167
xref: FMA:86327
xref: ncithesaurus:Renal_Medulla
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000958 ! implied link automatically realized ! medulla
intersection_of: UBERON:0000958 ! medulla
intersection_of: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0000363
name: reticuloendothelial system
alt_id: UBERON:BTO_0001174-FMA_84189
synonym: "Reticuloendothelial system" EXACT [FMA:84189]
xref: BTO:0001174
xref: FMA:84189
xref: ncithesaurus:Reticuloendothelial_System
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000364
name: rootlet
alt_id: UBERON:BTO_0001192-FMA_76787
synonym: "Rootlets" EXACT [FMA:76787]
synonym: "Rootlets set" EXACT [FMA:76787]
xref: BTO:0001192
xref: FMA:76787
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000365
name: urothelium
alt_id: UBERON:BTO_0001245-FMA_67695
synonym: "Uroepithelium" EXACT [FMA:67695]
xref: BTO:0001245
xref: FMA:67695
xref: ncithesaurus:Urothelium
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0000366
name: flexor
alt_id: UBERON:BTO_0001257-FMA_74559
xref: BTO:0001257
xref: FMA:74559
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000368
name: adductor brevis
alt_id: UBERON:BTO_0001288-FMA_22442
synonym: "Musculus adductos brevis" EXACT [FMA:22442]
xref: BTO:0001288
xref: FMA:22442
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0000369
name: corpus striatum
alt_id: UBERON:BTO_0001311-FMA_77616
xref: BTO:0001311
xref: EFO:0000381
xref: FMA:77616
xref: HOG:0001175
xref: ncithesaurus:Corpus_Striatum
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000370
name: adductor magnus
alt_id: UBERON:BTO_0001312-FMA_22443
xref: BTO:0001312
xref: FMA:22443
xref: galen:AdductorMagnus
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0000371
name: syncytiotrophoblast
alt_id: UBERON:BTO_0001335-FMA_83040
synonym: "Syncytiotrophoblast" EXACT [FMA:83040]
xref: BTO:0001335
xref: FMA:83040
xref: ncithesaurus:Syncytiotrophoblast
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000372
name: extensor digitorum brevis
alt_id: UBERON:BTO_0001337-FMA_51140
xref: BTO:0001337
xref: FMA:51140
is_a: UBERON:0001498 ! muscle of foot
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0000373
name: tapetum of corpus callosum
alt_id: UBERON:BTO_0001350-FMA_77208
def: "On either side of the corpus collosum, the fibers radiate in the white substance and pass to the various parts of the cerebral cortex; those curving forward from the genu into the frontal lobe constitute the forceps anterior, and those curving backward into the occipital lobe, the forceps posterior. Between these two parts is the main body of the fibers which constitute the tapetum and extend laterally on either side into the temporal lobe, and cover in the central part of the lateral ventricle. [Wikipedia via Greys]" [Wikipedia:Tapetum_of_corpus_callosum]
comment: not to be confused with BTO:0001350 or GO:0048655-tapetal layer morphogenesis
xref: FMA:77208
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0000374
name: thigh muscle
alt_id: UBERON:BTO_0001367-FMA_22470
synonym: "Thigh muscle" EXACT [FMA:22470]
xref: BTO:0001367
xref: FMA:22470
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0000375
name: mandibular nerve
alt_id: UBERON:BTO_0001375-FMA_52996
synonym: "Inferior maxillary nerve" EXACT [FMA:52996]
synonym: "Mandibular division [V3]" EXACT [FMA:52996]
synonym: "Mandibular division [Vc]" EXACT [FMA:52996]
synonym: "Mandibular division of fifth cranial nerve" EXACT [FMA:52996]
synonym: "Mandibular division of trigeminal nerve [Vc; V3]" EXACT [FMA:52996]
synonym: "Mandibular nerve [V3]" EXACT [FMA:52996]
synonym: "Mandibular nerve [Vc]" EXACT [FMA:52996]
synonym: "Nervus mandibularis [Vc; V3]" EXACT [FMA:52996]
synonym: "Third division of fifth cranial nerve" EXACT [FMA:52996]
synonym: "Third division of trigeminal nerve" EXACT [FMA:52996]
xref: BTO:0001375
xref: FMA:52996
xref: ncithesaurus:Inferior_Maxillary_Nerve
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0001021 ! nerve
relationship: branch_of UBERON:0001645 ! trigeminal nerve
[Term]
id: UBERON:0000376
name: upper leg
alt_id: UBERON:BTO_0001376-FMA_24967
synonym: "Proximal segment of free lower limb" EXACT [FMA:24967]
synonym: "stylopod of lower limb" EXACT []
synonym: "thigh" EXACT []
xref: BTO:0001376
xref: EFO:0001943
xref: FMA:24967
xref: MA:0000052
xref: ncithesaurus:Thigh
is_a: UBERON:0002472 ! stylopod
intersection_of: UBERON:0002472 ! stylopod
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0000377
name: maxillary nerve
alt_id: UBERON:BTO_0001378-FMA_52724
synonym: "Maxillary division [V2]" EXACT [FMA:52724]
synonym: "Maxillary division [Vb]" EXACT [FMA:52724]
synonym: "Maxillary division of fifth cranial nerve" EXACT [FMA:52724]
synonym: "Maxillary division of trigeminal nerve (Vb; V2)" EXACT [FMA:52724]
synonym: "Maxillary nerve [V2]" EXACT [FMA:52724]
synonym: "Maxillary nerve [Vb]" EXACT [FMA:52724]
synonym: "Nervus maxillaris (Vb; V2)" EXACT [FMA:52724]
synonym: "Second division of fifth cranial nerve" EXACT [FMA:52724]
synonym: "Second division of trigeminal nerve" EXACT [FMA:52724]
xref: BTO:0001378
xref: FMA:52724
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0001021 ! nerve
relationship: branch_of UBERON:0001645 ! trigeminal nerve
[Term]
id: UBERON:0000378
name: tongue muscle
alt_id: UBERON:BTO_0001386-FMA_46689
synonym: "Tongue muscle" EXACT [FMA:46689]
xref: BTO:0001386
xref: FMA:46689
xref: ncithesaurus:Tongue_Muscle
is_a: UBERON:0002376 ! muscle of head
is_a: UBERON:0003212 ! implied link automatically realized ! gustatory organ
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0000379
name: tracheal mucosa
alt_id: UBERON:BTO_0001390-FMA_7471
synonym: "Mucous membrane of trachea" EXACT [FMA:7471]
synonym: "Tracheal mucosa" EXACT [FMA:7471]
synonym: "Tracheal mucous membrane" EXACT [FMA:7471]
synonym: "Tunica mucosa (tracheae)" EXACT [FMA:7471]
xref: BTO:0001390
xref: FMA:7471
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001005 ! trachea
[Term]
id: UBERON:0000380
name: tuber
alt_id: UBERON:BTO_0001400-FMA_75430
xref: BTO:0001400
xref: EFO:0001015
xref: FMA:75430
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000381
name: detrusor
alt_id: UBERON:BTO_0001453-FMA_68018
xref: BTO:0001453
xref: FMA:68018
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000382
name: apocrine sweat gland
alt_id: UBERON:BTO_0001458-FMA_59155
xref: BTO:0001458
xref: FMA:59155
xref: ncithesaurus:Apocrine_Sweat_Gland
is_a: UBERON:0001820 ! sweat gland
relationship: constitutional_part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0000383
name: muscular system
alt_id: UBERON:BTO_0001485-FMA_72954
synonym: "Set of all muscles" EXACT [FMA:72954]
synonym: "Set of muscles of body" EXACT [FMA:72954]
xref: BTO:0001485
xref: EFO:0000801
xref: FMA:72954
is_a: UBERON:0001015 ! muscle system
relationship: constitutional_part_of UBERON:0002204 ! musculoskeletal system
relationship: systemic_part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0000385
name: labial gland
alt_id: UBERON:BTO_0001548-FMA_71613
synonym: "Labial glands" EXACT [FMA:71613]
synonym: "Labial glands set" EXACT [FMA:71613]
xref: BTO:0001548
xref: FMA:71613
xref: HAO:0000449
is_a: UBERON:0002530 ! gland
[Term]
id: UBERON:0000387
name: meniscus
alt_id: UBERON:BTO_0001592-FMA_76690
def: "crescent-shaped fibrocartilaginous structure present in the knee, acromioclavicular, sternoclavicular, and temporomandibular joints[2] that, in contrast to articular disks, only partly divides a joint cavity.[3] A small meniscus also occurs in the radio-carpal joint." [Wikipedia:Meniscus_(anatomy)]
synonym: "Meniscus" EXACT [FMA:76690]
xref: BTO:0001592
xref: FMA:76690
xref: ncithesaurus:Meniscus
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000388
name: epiglottis
alt_id: UBERON:BTO_0001628-FMA_55130
xref: BTO:0001628
xref: FMA:55130
xref: ncithesaurus:Epiglottis
is_a: UBERON:0000477 ! anatomical cluster
relationship: systemic_part_of UBERON:0001051 ! hypopharynx
[Term]
id: UBERON:0000389
name: lens cortex
alt_id: UBERON:BTO_0001632-FMA_58970
synonym: "Lens cortex" EXACT [FMA:58970]
xref: BTO:0001632
xref: FMA:58970
is_a: UBERON:0001851 ! cortex
relationship: part_of UBERON:0000965 ! lens
[Term]
id: UBERON:0000390
name: lens nucleus
alt_id: UBERON:BTO_0001633-FMA_58971
synonym: "Lens nucleus" EXACT [FMA:58971]
xref: BTO:0001633
xref: FMA:58971
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000965 ! lens
[Term]
id: UBERON:0000391
name: leptomeninx
alt_id: UBERON:BTO_0001634-FMA_231515
xref: BTO:0001634
xref: FMA:231515
is_a: UBERON:0002360 ! meninx
[Term]
id: UBERON:0000392
name: longissimus
alt_id: UBERON:BTO_0001648-FMA_77178
xref: BTO:0001648
xref: FMA:77178
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0000395
name: cochlear ganglion
alt_id: UBERON:BTO_0001688-FMA_53445
synonym: "Corti's ganglion" EXACT [FMA:53445]
synonym: "Ganglion of Corti" EXACT [FMA:53445]
synonym: "Spiral ganglion" EXACT [FMA:53445]
xref: BTO:0001688
xref: FMA:53445
is_a: UBERON:0001714 ! ganglion of cranial nerve
[Term]
id: UBERON:0000396
name: vallate papilla
alt_id: UBERON:BTO_0001705-FMA_71449
synonym: "Vallate papillae" EXACT [FMA:71449]
synonym: "Vallate papillae set" EXACT [FMA:71449]
xref: BTO:0001705
xref: FMA:71449
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000397
name: colonic epithelium
alt_id: UBERON:BTO_0001709-FMA_17302
synonym: "Colon epithelium" EXACT [FMA:17302]
synonym: "Colonic epithelium" EXACT [FMA:17302]
xref: BTO:0001709
xref: FMA:17302
xref: ZFA:0005128
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0001278 ! implied link automatically realized ! epithelium of large intestine
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0000398
name: sternal cartilage
alt_id: UBERON:BTO_0001721-FMA_32567
synonym: "Sternal cartilage" EXACT [FMA:32567]
xref: BTO:0001721
xref: FMA:32567
is_a: UBERON:0002384 ! connective tissue
[Term]
id: UBERON:0000399
name: jejunal mucosa
alt_id: UBERON:0003349
alt_id: UBERON:BTO_0001742-FMA_14949
synonym: "jejunal mucous membrane" EXACT [FMA:14949]
synonym: "jejunum mucosa" EXACT [FMA:14949]
synonym: "mucosa of jejunum" EXACT [FMA:14949]
xref: BTO:0001742
xref: EMAPA:27109
xref: EMAPA:27347
xref: FMA:14949
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0001204 ! implied link automatically realized ! mucosa of small intestine
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002115 ! jejunum
[Term]
id: UBERON:0000400
name: jejunal epithelium
alt_id: UBERON:BTO_0001743-FMA_17232
xref: BTO:0001743
xref: FMA:17232
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0000401
name: mandibular ramus
alt_id: UBERON:BTO_0001751-FMA_52828
synonym: "Mandibular ramus" EXACT [FMA:52828]
xref: BTO:0001751
xref: FMA:52828
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000402
name: nasal vestibule
alt_id: UBERON:BTO_0001761-FMA_59644
synonym: "Vestibular part of nasal cavity" EXACT [FMA:59644]
xref: BTO:0001761
xref: FMA:59644
is_a: UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0000403
name: scalp
alt_id: UBERON:BTO_0001809-FMA_46494
xref: BTO:0001809
xref: FMA:46494
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0000407
name: sympathetic chain
alt_id: UBERON:BTO_0001834-FMA_6258
synonym: "Sympathetic chain" EXACT [FMA:6258]
xref: BTO:0001834
xref: FMA:6258
is_a: UBERON:0000062 ! organ
relationship: systemic_part_of UBERON:0000013 ! sympathetic nervous system
[Term]
id: UBERON:0000408
name: vertebral ganglion
alt_id: UBERON:BTO_0001835-FMA_6572
synonym: "Intermediate ganglion" EXACT [FMA:6572]
xref: BTO:0001835
xref: FMA:6572
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001991 ! cervical ganglion
[Term]
id: UBERON:0000409
name: serous gland
alt_id: UBERON:BTO_0001837-FMA_62889
xref: BTO:0001837
xref: FMA:62889
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002365 ! exocrine gland
[Term]
id: UBERON:0000410
name: bronchial mucosa
alt_id: UBERON:BTO_0001846-FMA_62652
synonym: "Bronchial mucosa" EXACT [FMA:62652]
synonym: "Mucous membrane of bronchus" EXACT [FMA:62652]
xref: BTO:0001846
xref: FMA:62652
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0000411
name: visual cortex
alt_id: UBERON:BTO_0001857-FMA_242644
def: "Area including V1 and extrastriate visual cortical areas such as V2, V3, V4, and V5." [Wikipedia:Visual_cortex]
synonym: "V1" EXACT [Wikipedia:Visual_cortex]
xref: BTO:0001857
xref: EFO:0000916
xref: FMA:242644
is_a: UBERON:0003208
[Term]
id: UBERON:0000412
name: dermal papilla
alt_id: UBERON:BTO_0001858-FMA_70737
synonym: "Follicular papilla" EXACT [FMA:70737]
xref: BTO:0001858
xref: FMA:70737
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000414
name: mucous gland
alt_id: UBERON:BTO_0001979-FMA_62888
xref: BTO:0001979
xref: FMA:62888
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002365 ! exocrine gland
[Term]
id: UBERON:0000415
name: artery wall
alt_id: UBERON:BTO_0002009-FMA_14155
synonym: "Arterial wall" EXACT [FMA:14155]
xref: BTO:0002009
xref: FMA:14155
xref: galen:ArterialWall
is_a: UBERON:0000060 ! implied link automatically realized ! anatomical wall
is_a: UBERON:0000064 ! organ part
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0001637 ! artery
[Term]
id: UBERON:0000416
name: subdural space
alt_id: UBERON:BTO_0002082-FMA_83803
xref: BTO:0002082
xref: FMA:83803
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0000417
name: primitive endoderm
alt_id: UBERON:BTO_0002123-FMA_85520
xref: BTO:0002123
xref: FMA:85520
is_a: UBERON:0000925 ! endoderm
is_a: UBERON:0003256 ! implied link automatically realized ! endoderm of embryo
[Term]
id: UBERON:0000418
name: tubercle
alt_id: UBERON:BTO_0002173-FMA_75429
is_obsolete: true
[Term]
id: UBERON:0000420
name: myoepithelium
alt_id: UBERON:BTO_0002308-FMA_67805
synonym: "Myoepithelium" EXACT [FMA:67805]
xref: BTO:0002308
xref: FMA:67805
is_a: UBERON:0000488 ! atypical epithelium
[Term]
id: UBERON:0000423
name: eccrine sweat gland
alt_id: UBERON:BTO_0002323-FMA_59154
synonym: "Eccrine gland" EXACT [FMA:59154]
xref: BTO:0002323
xref: FMA:59154
xref: ncithesaurus:Eccrine_Sweat_Gland
is_a: UBERON:0001820 ! sweat gland
relationship: constitutional_part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0000424
name: gastric pit
alt_id: UBERON:0000425
alt_id: UBERON:BTO_0002364-FMA_62947
synonym: "Gastric pit" EXACT [FMA:62947]
xref: BTO:0002364
xref: FMA:62947
xref: ncithesaurus:Gastric_Pit
is_a: UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0000426
name: extravillous trophoblast
alt_id: UBERON:BTO_0002366-FMA_86561
synonym: "Extravillous trophoblast" EXACT [FMA:86561]
xref: BTO:0002366
xref: FMA:86561
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000427
name: cytotrophoblastic cell
alt_id: UBERON:BTO_0002367-FMA_83039
synonym: "Cellular trophoblast" EXACT [FMA:83039]
synonym: "Cytotrophoblastic cell" EXACT [FMA:83039]
xref: BTO:0002367
xref: FMA:83039
xref: ncithesaurus:Cytotrophoblastic_Cell
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000428
name: prostate epithelium
alt_id: UBERON:0002452
alt_id: UBERON:BTO_0002397-FMA_66812
comment: TODO - check 2 FMA IDs
synonym: "prostate gland epithelium" EXACT []
synonym: "Prostatic gland epithelium" EXACT [FMA:79643]
synonym: "prostatic gland epithelium" EXACT []
xref: BTO:0002397
xref: FMA:66812
xref: FMA:79643
xref: MA:0001737
xref: ncithesaurus:Prostatic_Epithelium
is_a: UBERON:0000485 ! simple columnar epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002367 ! prostate
[Term]
id: UBERON:0000429
name: enteric plexus
alt_id: UBERON:BTO_0002437-FMA_77597
synonym: "Enteric nerve plexus" EXACT [FMA:77597]
synonym: "Sympathetic enteric nerve plexus" EXACT [FMA:77597]
xref: BTO:0002437
xref: FMA:77597
is_a: UBERON:0001816 ! autonomic nerve plexus
[Term]
id: UBERON:0000430
name: ventral intermediate nucleus of thalamus
alt_id: UBERON:BTO_0002469-FMA_84347
xref: BTO:0002469
xref: FMA:84347
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0000431
name: ventral medial complex of thalamus
alt_id: UBERON:BTO_0002470-FMA_77795
synonym: "Ventral medial complex of thalamus" EXACT [FMA:77795]
synonym: "Ventral medial nuclei of thalamus" EXACT [FMA:77795]
xref: BTO:0002470
xref: FMA:77795
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000432
name: endopeduncular nucleus
alt_id: UBERON:BTO_0002475-FMA_77691
xref: BTO:0002475
xref: FMA:77691
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0000433
name: posterior paraventricular nucleus of thalamus
alt_id: UBERON:BTO_0002477-FMA_76961
synonym: "Posterior paraventricular nucleus of thalamus" EXACT [FMA:76961]
xref: BTO:0002477
xref: FMA:76961
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0000434
name: anterior paraventricular nucleus of thalamus
alt_id: UBERON:BTO_0002478-FMA_76962
synonym: "Anterior paraventricular nucleus of thalamus" EXACT [FMA:76962]
xref: BTO:0002478
xref: FMA:76962
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0000435
name: lateral tuberal nucleus
alt_id: UBERON:BTO_0002481-FMA_62336
synonym: "Lateral tuberal hypothalamic nuclei" EXACT [FMA:62336]
synonym: "Lateral tuberal nuclei" EXACT [FMA:62336]
xref: BTO:0002481
xref: FMA:62336
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0002430 ! lateral hypothalamic area
[Term]
id: UBERON:0000437
name: arachnoid barrier layer
alt_id: UBERON:BTO_0002498-FMA_231559
xref: BTO:0002498
xref: FMA:231559
is_a: UBERON:0000064 ! organ part
relationship: constitutional_part_of UBERON:0002362 ! arachnoid mater
[Term]
id: UBERON:0000438
name: set of arachnoid trabecula
alt_id: UBERON:BTO_0002500-FMA_77761
synonym: "Arachnoid trabeculae set" EXACT [FMA:77761]
xref: BTO:0002500
xref: FMA:77761
is_a: UBERON:0000061 ! anatomical structure
relationship: has_part UBERON:0000439 ! arachnoid trabecula
[Term]
id: UBERON:0000439
name: arachnoid trabecula
alt_id: UBERON:BTO_0002500-FMA_83979
def: "a small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue." [GO:0060343]
xref: BTO:0002500
xref: FMA:83979
is_a: UBERON:0000440 ! trabecula
relationship: constitutional_part_of UBERON:0002362 ! arachnoid mater
[Term]
id: UBERON:0000440
name: trabecula
alt_id: UBERON:BTO_0002501-FMA_85273
def: "A small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue. On histological section, a trabecula can look like a septum, but in three dimensions they are topologically distinct, with trabeculae being roughly rod or pillar-shaped and septa being sheet-like.. Trabeculae are usually composed of dense fibrous tissue, i.e. mainly of collagen, and in most cases provide mechanical strengthening or stiffening to a soft solid organ, such as the spleen. They can be composed of other materials, such as bone or muscle[WP]." [Wikipedia:Trabecula]
xref: BTO:0002501
xref: FMA:85273
xref: ZFA:0001321
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000442
name: right testicular vein
alt_id: UBERON:BTO_0002679-FMA_14341
synonym: "Vena testicularis (adrenalis) dextra" EXACT [FMA:14341]
xref: BTO:0002679
xref: FMA:14341
is_a: UBERON:0001144 ! testicular vein
[Term]
id: UBERON:0000443
name: left testicular vein
alt_id: UBERON:BTO_0002680-FMA_14345
xref: BTO:0002680
xref: FMA:14345
is_a: UBERON:0001144 ! testicular vein
[Term]
id: UBERON:0000444
name: lymphoid follicle
alt_id: UBERON:BTO_0002684-FMA_55222
synonym: "Lymphoid follicle" EXACT [FMA:55222]
synonym: "Lymphoid nodule" EXACT [FMA:55222]
xref: BTO:0002684
xref: FMA:55222
xref: ncithesaurus:Lymphoid_Follicle
is_a: UBERON:0001744 ! lymphoid tissue
[Term]
id: UBERON:0000445
name: habenular trigone
alt_id: UBERON:BTO_0002700-FMA_74868
xref: BTO:0002700
xref: FMA:74868
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0000446
name: septum of telencephalon
alt_id: UBERON:BTO_0002705-FMA_61842
def: "Subdivision of the telencephalon on the midline between the lateral ventricles which contains the septum pellucidum and the septal nuclei[FMA]." [FMA:61842]
synonym: "septal area" EXACT [FMA:61842]
synonym: "septum (NN)" EXACT [FMA:61842]
synonym: "telencephalon septum" EXACT [FMA:61842]
xref: BTO:0002705
xref: FMA:61842
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0000449
name: decidual cell
alt_id: UBERON:BTO_0002770-FMA_86480
xref: BTO:0002770
xref: FMA:86480
xref: ncithesaurus:Decidual_Cell
is_a: UBERON:0000478 ! extraembryonic structure
[Term]
id: UBERON:0000450
name: corpus albicans
alt_id: UBERON:BTO_0002784-FMA_18620
synonym: "Corpus albicans of ovary" EXACT [FMA:18620]
xref: BTO:0002784
xref: FMA:18620
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000451
name: prefrontal cortex
alt_id: UBERON:BTO_0002807-FMA_224850
synonym: "Prefrontal association cortex" EXACT [FMA:224850]
xref: BTO:0002807
xref: EFO:0001384
xref: FMA:224850
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000452
name: gubernaculum testis
alt_id: UBERON:BTO_0002813-FMA_20421
xref: BTO:0002813
xref: FMA:20421
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000453
name: decidua basalis
alt_id: UBERON:BTO_0002819-FMA_86477
xref: BTO:0002819
xref: EFO:0001918
xref: FMA:86477
xref: MA:0002905
xref: ncithesaurus:Decidua_Basalis
is_a: UBERON:0000478 ! extraembryonic structure
[Term]
id: UBERON:0000454
name: cerebral subcortex
alt_id: UBERON:BTO_0002858-FMA_242188
synonym: "Cerebral medulla" EXACT [FMA:242188]
xref: BTO:0002858
xref: FMA:242188
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0000456
name: secretion
alt_id: UBERON:BTO_0002979-FMA_9675
xref: BTO:0002979
xref: FMA:9675
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000457
name: cavernous artery
alt_id: UBERON:BTO_0002996-FMA_70527
synonym: "Cavernous branch of cavernous part of internal carotid artery" EXACT [FMA:70527]
xref: BTO:0002996
xref: FMA:70527
is_a: UBERON:0000063 ! organ segment
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0000458
name: endocervix
alt_id: UBERON:BTO_0003002-FMA_86485
xref: BTO:0003002
xref: FMA:86485
xref: ncithesaurus:Endocervix
is_a: UBERON:0000063 ! organ segment
[Term]
id: UBERON:0000459
name: uterine wall
alt_id: UBERON:BTO_0003083-FMA_17560
synonym: "Uterine wall" EXACT [FMA:17560]
xref: BTO:0003083
xref: FMA:17560
is_a: UBERON:0000060 ! implied link automatically realized ! anatomical wall
is_a: UBERON:0000064 ! organ part
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000995 ! uterus
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0000460
name: major vestibular gland
alt_id: UBERON:BTO_0003115-FMA_9598
def: "Gland found in pairs located slightly below and to the left and right of the opening of the vagina in women. Bartholin's glands are homologous to bulbourethral glands in males. However, while Bartholin's glands are located in the superficial perineal pouch, bulbourethral glands are located in the deep perineal pouch. They secrete mucus to provide vaginal lubrication." [Wikipedia:Bartholin's_glands]
synonym: "Bartholin's gland" EXACT [FMA:9598]
synonym: "Duverney's gland" EXACT [FMA:9598]
synonym: "Major vestibular gland" EXACT [FMA:9598]
synonym: "Tiedemann's gland" EXACT [FMA:9598]
synonym: "Vulvovaginal gland" EXACT [FMA:9598]
xref: BTO:0003115
xref: FMA:9598
is_a: UBERON:0002530 ! gland
is_a: UBERON:0003297 ! implied link automatically realized ! gland of integumental system
relationship: systemic_part_of UBERON:0002416 ! integumental system
[Term]
id: UBERON:0000461
name: minor vestibular gland
alt_id: UBERON:BTO_0003116-FMA_20019
synonym: "Glandula vestibular minor" EXACT [FMA:20019]
synonym: "Minor vestibular gland" EXACT [FMA:20019]
xref: BTO:0003116
xref: FMA:20019
is_a: UBERON:0002530 ! gland
[Term]
id: UBERON:0000462
name: villus
is_obsolete: true
[Term]
id: UBERON:0000463
name: portion of organism substance
alt_id: UBERON:CARO_0000004-FBbt_00007019
def: "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [CARO:MAH]
comment: This class was created automatically from a combination of ontologies
xref: BILA:0000004
xref: CARO:0000004
xref: FBbt:00007019
xref: HAO:0000004
xref: ZFA:0001487
is_a: UBERON:0000465 ! material anatomical entity
disjoint_from: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000464
name: anatomical space
alt_id: UBERON:CARO_0000005-FBbt_00007017-FMA_5897-ZFA_0001643
def: "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures. // Non-material physical anatomical entity of three dimensions, which is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more body substances or anatomical structures. Examples: celom, thoracic cavity, lesser sac of peritoneum, cavity of right atrium, lumen of aorta, mediastinum, anterior compartment of forearm, intervertebral foramen. // Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "Anatomical space" EXACT []
xref: BILA:0000005
xref: CARO:0000005
xref: FBbt:00007017
xref: FMA:5897
xref: HAO:0000005
xref: TAO:0001668
xref: ZFA:0001643
is_a: UBERON:0000466 ! immaterial anatomical entity
relationship: surrounded_by UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000465
name: material anatomical entity
alt_id: UBERON:CARO_0000006-FBbt_00007016-FMA_67165-ZFA_0001487
def: "Anatomical entity that has mass." [CARO:MAH]
comment: This class was created automatically from a combination of ontologies
synonym: "Material anatomical entity" EXACT []
xref: BILA:0000006
xref: CARO:0000006
xref: FBbt:00007016
xref: FMA:67165
xref: HAO:0000006
xref: TAO:0001836
is_a: UBERON:0001062 ! anatomical entity
[Term]
id: UBERON:0000466
name: immaterial anatomical entity
alt_id: UBERON:CARO_0000007-FBbt_00007015
def: "Anatomical entity that has no mass." [CARO:MAH]
comment: This class was created automatically from a combination of ontologies
xref: BILA:0000007
xref: CARO:0000007
xref: FBbt:00007015
xref: FMA:67112
xref: HAO:0000007
is_a: UBERON:0001062 ! anatomical entity
disjoint_from: UBERON:0000465 ! material anatomical entity
[Term]
id: UBERON:0000467
name: anatomical system
alt_id: UBERON:CARO_0000011-XAO_0003002-ZFA_0001439
alt_id: UBERON:FBbt_00004856-FBbt_00004969-FMA_7149-FMA_72979-MA_0000003-MA_0000014-MIAA_0000033-WBbt_0005730-XAO_0000176
def: "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity[CARO]. A group of organs that work together to perform a certain task [Wikipedia]." [CARO:0000011, CARO:MAH, Wikipedia:Organ_system, ZFIN:curator]
subset: uberon_slim
synonym: "Organ system" EXACT []
synonym: "organ system" EXACT []
xref: AAO:0000007
xref: BILA:0000011
xref: CARO:0000011
xref: EHDAA:392
xref: FBbt:00004856
xref: FMA:7149
xref: galen:AnatomicalSystem
xref: HAO:0000011
xref: MA:0000003
xref: ncithesaurus:Organ_System
xref: TAO:0001439
xref: XAO:0003002
xref: ZFA:0001439
is_a: UBERON:0000480 ! anatomical group
[Term]
id: UBERON:0000468
name: multi-cellular organism
alt_id: UBERON:CARO_0000012-XAO_0003004
def: "Anatomical structure that is an individual member of a species and consists of more than one cell. // Anatomical structure that is an individual member of Xenopus laevis." [CARO:0000012, CARO:MAH, Wikipedia:Multi-cellular_organism]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "body" RELATED []
synonym: "whole organism" EXACT []
xref: BILA:0000012
xref: CARO:0000012
xref: FMA:256133
xref: HAO:0000012
xref: ncithesaurus:Whole_Organism
xref: TAO:0001094
xref: XAO:0003004
xref: ZFA:0001094
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000470
name: cell part
alt_id: UBERON:CARO_0000014-FBbt_00007012-FMA_86454
def: "Anatomical structure that is a direct part of the cell." [CARO:MAH]
comment: This class was created automatically from a combination of ontologies
synonym: "cell component" EXACT []
xref: BILA:0000014
xref: CARO:0000014
xref: FBbt:00007012
xref: FMA:86454
xref: GO:0044464
xref: HAO:0000014
xref: ncithesaurus:Cell_Part
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000471
name: compound organ component
alt_id: UBERON:CARO_0000019-XAO_0003039-ZFA_0001489
def: "Multi-tissue structure that is part of a compound organ. // Multi-tissue structure that is part of a compound organ. // Multi-tissue structure that is part of a compound organ." [CARO:0000019, CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: BILA:0000019
xref: CARO:0000019
xref: HAO:0000019
xref: TAO:0001489
xref: XAO:0003039
xref: ZFA:0001489
is_a: UBERON:0000481 ! multi-tissue structure
[Term]
id: UBERON:0000472
name: simple organ
alt_id: UBERON:CARO_0000021-XAO_0003038-ZFA_0001492
def: "Multi-tissue structure that is not part of a compound organ. // Multi-tissue structure that is not part of a compound organ. // Multi-tissue structure that is not part of a compound organ." [CARO:0000021, CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: BILA:0000021
xref: CARO:0000021
xref: HAO:0000021
xref: TAO:0001492
xref: XAO:0003038
xref: ZFA:0001492
is_a: UBERON:0000481 ! multi-tissue structure
[Term]
id: UBERON:0000473
name: testis
alt_id: UBERON:CARO_0000027-FBbt_00004927-FBbt_00004928-FBbt_00007004-FMA_45664-FMA_7210-MA_0000396-MA_0000411-MIAA_0000029-MIAA_0000132-WBbt_0006794-XAO_0000155-XAO_0000157-XAO_0003006-ZFA_0000242-ZFA_0000598
def: "gonad of a male animal, produces sperm. // The organs of the male reproductive system. // Reproductive organ that produces and releases sperm. // MMale reproductive organ." [CARO:0000027, CARO:MAH, FB:FBrf0007735, FB:FBrf0034075, NLM:genitalia, WB:wjc, Wikipedia:Testis, XB:curator, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "male" RELATED []
xref: AAO:0000606
xref: BILA:0000124
xref: BTO:0001363
xref: EFO:0000984
xref: EHDAA:8146
xref: FBbt:00004928
xref: FMA:7210
xref: GAID:396
xref: HAO:0001007
xref: HOG:0000252
xref: MA:0000411
xref: MAT:0000132
xref: MIAA:0000132
xref: ncithesaurus:Testis
xref: TAO:0000598
xref: WBbt:0006794
xref: XAO:0000157
xref: ZFA:0000598
is_a: UBERON:0000991 ! gonad
intersection_of: UBERON:0000991 ! gonad
intersection_of: part_of UBERON:0000079 ! male reproductive system
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0000474
name: female reproductive system
alt_id: UBERON:CARO_0000028-FBbt_00004864-FBbt_00007011-FMA_45663-MA_0000381-MIAA_0000028-XAO_0000156-XAO_0003005-ZFA_0000303
def: "The organs of the female reproductive system." [FB:FBrf0007735, FB:FBrf0034074, NLM:genitalia, Wikipedia:Female_genitalia]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "female genital system" RELATED []
synonym: "female genitalia" RELATED []
xref: BTO:0000083
xref: EFO:0000969
xref: FBbt:00004827
xref: FBbt:00004864
xref: FMA:45663
xref: GAID:364
xref: HAO:0000324
xref: HOG:0000726
xref: MA:0000381
xref: MIAA:0000028
xref: ncithesaurus:Female_Reproductive_System
xref: OpenCyc:Mx4rvVipTZwpEbGdrcN5Y29ycA
xref: XAO:0000156
is_a: UBERON:0000990 ! reproductive system
intersection_of: UBERON:0000990 ! reproductive system
intersection_of: part_of UBERON:0003100 ! female organism
relationship: part_of UBERON:0003100 ! female organism
[Term]
id: UBERON:0000475
name: organism subdivision
alt_id: UBERON:CARO_0000032-FBbt_00007009-FMA_67504-MIAA_0000293-XAO_0003013-ZFA_0001308
alt_id: UBERON:MA_0002433-Principal
def: "Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism. // Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism. // Anatomical structure, which is a subdivision of a cardinal body part; it may exclude bones; is demarcated from other subdivisions of the same cardinal body part by anatomical surfaces or lines or topographical references; together with other contiguous subdivisions of the same cardinal body part, it constitutes a cardinal body part. Examples: thorax, perineum, back of neck, forearm, hand, phalanx, nose, auricle of ear, scrotum. // Anatomical structure that is a primary subdivision of the whole organism. // Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism." [CARO:0000032, CARO:MAH, Wikipedia:Body_part, ZFIN:curator]
subset: uberon_slim
synonym: "anatomic region" EXACT []
synonym: "anatomical site" RELATED []
synonym: "body part" EXACT []
synonym: "Principal body part subdivision" EXACT []
synonym: "principal body part subdivision" EXACT []
synonym: "Subdivision of cardinal body part" EXACT []
synonym: "subdivision of cardinal body part" RELATED []
xref: BILA:0000032
xref: CARO:0000032
xref: EFO:0000808
xref: FBbt:00007009
xref: FMA:67504
xref: galen:BodyPart
xref: HAO:0000032
xref: MA:0002433
xref: MAT:0000293
xref: MIAA:0000293
xref: ncithesaurus:Body_Part
xref: NULL:Principal
xref: TAO:0001308
xref: XAO:0003013
xref: ZFA:0001308
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0000476
name: acellular anatomical structure
alt_id: UBERON:CARO_0000040-FBbt_00007013-FMA_63863-ZFA_0000382
def: "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue. // Anatomical structure which consists of cell parts and cell substances and together does not constitute a cell or a tissue. Examples: basement membrane, osteoid, prostatic concretion. // Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." [CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "Acellular anatomical structure" EXACT []
xref: BILA:0000040
xref: CARO:0000040
xref: FBbt:00007013
xref: FMA:63863
xref: HAO:0000040
xref: TAO:0000382
xref: XAO:0003162
xref: ZFA:0000382
is_a: UBERON:0000061 ! anatomical structure
disjoint_from: UBERON:0000480 ! anatomical group
[Term]
id: UBERON:0000477
name: anatomical cluster
alt_id: UBERON:CARO_0000041-FMA_49443-ZFA_0001478
def: "Anatomical group that has its parts adjacent to one another. // Anatomical structure, which has as its parts a heterogeneous collection of organs, organ parts, cells or body part subdivisions that are adjacent to, or continuous with one another; does not constitute an organ, organ system or organ system subdivision, or body part or body part subdivision. Examples: joint, adnexa of uterus, root of lung, renal pedicle, back. // Anatomical group that has its parts adjacent to one another." [CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "Anatomical cluster" EXACT []
xref: BILA:0000041
xref: CARO:0000041
xref: FMA:49443
xref: HAO:0000041
xref: TAO:0001478
xref: XAO:0003160
xref: ZFA:0001478
is_a: UBERON:0000480 ! anatomical group
disjoint_from: UBERON:0000467 ! anatomical system
[Term]
id: UBERON:0000478
name: extraembryonic structure
alt_id: UBERON:CARO_0000042-FBbt_00005835-FMA_85537-MIAA_0000061-ZFA_0000020
def: "Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Extra-embryonic structure" EXACT []
synonym: "extra-embryonic structure" EXACT []
synonym: "extraembryonic component" RELATED []
synonym: "extraembryonic tissue" EXACT []
xref: BILA:0000042
xref: BTO:0003360
xref: CARO:0000042
xref: EFO:0001406
xref: FBbt:00005835
xref: FMA:85537
xref: HAO:0000042
xref: HOG:0000292
xref: MAT:0000061
xref: MIAA:0000061
xref: ncithesaurus:Extraembryonic_Structure
xref: TAO:0000020
xref: ZFA:0000020
is_a: UBERON:0000061 ! anatomical structure
disjoint_from: UBERON:0002050 ! embryonic structure
relationship: adjacent_to UBERON:0002050 ! embryonic structure
relationship: existence_starts_and_ends_during UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0000479
name: portion of tissue
alt_id: UBERON:CARO_0000043-FBbt_00007003-XAO_0003040-ZFA_0001477
def: "Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships. // Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships. // Anatomical structure that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships. // Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships." [CARO:0000043, CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "tissue" RELATED []
synonym: "tissue portion" EXACT []
xref: BILA:0000043
xref: CARO:0000043
xref: FBbt:00007003
xref: FMA:9637
xref: HAO:0000043
xref: TAO:0001477
xref: XAO:0003040
xref: ZFA:0001477
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000480
name: anatomical group
alt_id: UBERON:CARO_0000054-XAO_0003001-ZFA_0001512
def: "Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue. // Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue. // Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue." [CARO:0000054, CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: BILA:0000054
xref: CARO:0000054
xref: HAO:0000054
xref: TAO:0001512
xref: XAO:0003001
xref: ZFA:0001512
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0000481
name: multi-tissue structure
alt_id: UBERON:CARO_0000055-FBbt_00007010-XAO_0003037-ZFA_0001488
def: "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. // Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. // Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. // Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." [CARO:0000055, CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: BILA:0000055
xref: CARO:0000055
xref: FBbt:00007010
xref: HAO:0000055
xref: TAO:0001488
xref: XAO:0003037
xref: ZFA:0001488
is_a: UBERON:0000061 ! anatomical structure
relationship: has_part UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0000482
name: basal lamina
alt_id: UBERON:CARO_0000065-FMA_62918-ZFA_0001485
def: "Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue. // Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue." [CARO:MAH, Wikipedia:Basal_lamina, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Basal lamina" EXACT []
synonym: "Basal lamina of connective tissue" EXACT []
synonym: "basal lamina of connective tissue" EXACT []
xref: BILA:0000065
xref: CARO:0000065
xref: FMA:62918
xref: GO:0005605
xref: HAO:0000065
xref: ncithesaurus:Basal_Lamina
xref: TAO:0001485
xref: WBbt:0005756
xref: XAO:0003163
xref: ZFA:0001485
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: adjacent_to UBERON:0000483 ! epithelium
[Term]
id: UBERON:0000483
name: epithelium
alt_id: UBERON:CARO_0000066-FBbt_00007005-FMA_9639-XAO_0003045-ZFA_0001486
def: "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium." [CARO:MAH, Wikipedia:Epithelium, ZFA:0001486, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Epithelial tissue" EXACT []
synonym: "epithelial tissue" EXACT []
synonym: "Epithelium" EXACT []
xref: AAO:0000144
xref: BILA:0000066
xref: BTO:0000416
xref: CARO:0000066
xref: EHDAA:1545
xref: EHDAA:2126
xref: EHDAA:3792
xref: EHDAA:3800
xref: EHDAA:3806
xref: EHDAA:4168
xref: EHDAA:4174
xref: EHDAA:4182
xref: EHDAA:4188
xref: EHDAA:4196
xref: EHDAA:4696
xref: EHDAA:4702
xref: EHDAA:4710
xref: EHDAA:4722
xref: EHDAA:4724
xref: EHDAA:4730
xref: EHDAA:4743
xref: EHDAA:5003
xref: EHDAA:5007
xref: EHDAA:510
xref: EHDAA:5145
xref: EHDAA:5155
xref: EHDAA:5161
xref: EHDAA:5167
xref: EHDAA:5173
xref: EHDAA:5198
xref: EHDAA:5204
xref: EHDAA:6100
xref: EHDAA:6106
xref: EHDAA:6116
xref: EHDAA:6126
xref: EHDAA:6136
xref: EHDAA:6144
xref: EHDAA:6150
xref: EHDAA:6156
xref: EHDAA:6162
xref: EHDAA:6168
xref: EHDAA:6180
xref: EHDAA:6186
xref: EHDAA:6192
xref: EHDAA:6202
xref: EHDAA:6214
xref: EHDAA:6220
xref: EHDAA:6230
xref: EHDAA:6236
xref: EHDAA:6246
xref: EHDAA:6256
xref: EHDAA:6266
xref: EHDAA:6276
xref: EHDAA:6286
xref: EHDAA:6294
xref: EHDAA:6300
xref: EHDAA:6306
xref: EHDAA:6312
xref: EHDAA:6318
xref: EHDAA:6526
xref: EHDAA:6803
xref: EHDAA:6966
xref: EHDAA:7090
xref: EHDAA:7765
xref: EHDAA:7787
xref: EHDAA:7794
xref: EHDAA:7800
xref: EHDAA:7806
xref: EHDAA:7991
xref: EHDAA:7999
xref: EHDAA:8013
xref: EHDAA:8019
xref: EHDAA:8027
xref: EHDAA:8037
xref: EHDAA:8049
xref: EHDAA:8055
xref: EHDAA:8173
xref: EHDAA:8185
xref: EHDAA:8201
xref: EHDAA:8211
xref: EHDAA:8223
xref: EHDAA:9035
xref: EHDAA:9043
xref: EHDAA:9049
xref: EHDAA:9248
xref: EHDAA:9257
xref: EHDAA:9285
xref: EHDAA:931
xref: FBbt:00007005
xref: FMA:9639
xref: GAID:402
xref: HAO:0000066
xref: HOG:0000387
xref: ncithesaurus:Epithelium
xref: TAO:0001486
xref: XAO:0003045
xref: ZFA:0001486
is_a: UBERON:0000119 ! cell layer
[Term]
id: UBERON:0000484
name: simple cuboidal epithelium
alt_id: UBERON:CARO_0000067-FMA_45566-ZFA_0001497
def: "Unilaminar epithelium that consists of a single layer of cuboidal cells. // Unilaminar epithelium, which consists of a single layer of cuboidal cells. Examples: epithelium of proximal renal tubule, pigmented layer of retina, epithelium of lens. // Unilaminar epithelium that consists of a single layer of cuboidal cells." [CARO:MAH, Wikipedia:Simple_cuboidal_epithelium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Epithelium simplex cuboideum" EXACT []
synonym: "epithelium simplex cuboideum" EXACT []
synonym: "Simple cuboidal epithelium" EXACT []
xref: BILA:0000067
xref: CARO:0000067
xref: FMA:45566
xref: HAO:0000067
xref: ncithesaurus:Simple_Cuboidal_Epithelium
xref: TAO:0001497
xref: ZFA:0001497
is_a: UBERON:0000490 ! unilaminar epithelium
[Term]
id: UBERON:0000485
name: simple columnar epithelium
alt_id: UBERON:CARO_0000068-FMA_45567-ZFA_0001496
def: "Unilaminar epithelium, which consists of a single layer of columnar cells. Examples: ciliated columnar epithelium, gastric epithelium, microvillus columnar epithelium." [CARO:MAH, Wikipedia:Simple_columnar_epithelium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Epithelium simplex columnare" EXACT []
synonym: "epithelium simplex columnare" EXACT []
synonym: "Simple columnar epithelium" EXACT []
synonym: "simple columnar epithelium" EXACT []
xref: CARO:0000068
xref: FMA:45567
xref: HAO:0000068
xref: ncithesaurus:Simple_Columnar_Epithelium
xref: TAO:0001496
xref: ZFA:0001496
is_a: UBERON:0000490 ! unilaminar epithelium
[Term]
id: UBERON:0000486
name: multilaminar epithelium
alt_id: UBERON:CARO_0000069-FMA_45562-ZFA_0001494
def: "Epithelium which consists of more than one layer of epithelial cells that may or may not be in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, ciliated stratified columnar epithelium." [CARO:MAH, Wikipedia:Stratified_epithelium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Multilaminar epithelium" EXACT []
synonym: "Stratified epithelium" EXACT []
synonym: "stratified epithelium" EXACT []
xref: BILA:0000069
xref: BTO:0002074
xref: CARO:0000069
xref: FMA:45562
xref: HAO:0000069
xref: ncithesaurus:Stratified_Epithelium
xref: TAO:0001494
xref: ZFA:0001494
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0000487
name: simple squamous epithelium
alt_id: UBERON:CARO_0000070-FMA_45565-ZFA_0001498
def: "Unilaminar epithelium that consists of a single layer of squamous cells. // Unilaminar epithelium which consists of a single layer of squamous cells. Examples: pulmonary alveolar epithelium, endothelium. // Unilaminar epithelium that consists of a single layer of squamous cells." [CARO:MAH, Wikipedia:Simple_squamous_epithelium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Epithelium simplex squamosum" EXACT []
synonym: "epithelium simplex squamosum" EXACT []
synonym: "Simple squamous epithelium" EXACT []
xref: BILA:0000070
xref: CARO:0000070
xref: FMA:45565
xref: HAO:0000070
xref: ncithesaurus:Simple_Squamous_Epithelium
xref: TAO:0001498
xref: ZFA:0001498
is_a: UBERON:0000490 ! unilaminar epithelium
[Term]
id: UBERON:0000488
name: atypical epithelium
alt_id: UBERON:CARO_0000071-FMA_61741-ZFA_0001493
def: "Epithelium that consists of epithelial cells not arranged in one ore more layers. // Epithelium the cells of which do not conform to the typical arrangement of unilaminar and multilaminar epithelium. Examples: olfactory epithelium; epithelium of ciliary body. // Epithelium that consists of epithelial cells not arranged in one or more layers." [CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "Atypical epithelium" EXACT []
synonym: "Heterogenous epithelium" EXACT []
synonym: "heterogenous epithelium" EXACT []
xref: BILA:0000071
xref: CARO:0000071
xref: FMA:61741
xref: HAO:0000071
xref: TAO:0001493
xref: ZFA:0001493
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0000489
name: cavitated compound organ
alt_id: UBERON:CARO_0000072-ZFA_0001490
def: "Compound organ that contains one or more macroscopic anatomical spaces. // Compound organ that contains one or more macroscopic anatomical spaces." [CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: BILA:0000072
xref: CARO:0000072
xref: HAO:0000072
xref: TAO:0001490
xref: XAO:0003165
xref: ZFA:0001490
is_a: UBERON:0003103 ! compound organ
[Term]
id: UBERON:0000490
name: unilaminar epithelium
alt_id: UBERON:CARO_0000073-FMA_45561-ZFA_0001495
def: "Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium." [CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "Simple epithelium" EXACT []
synonym: "simple epithelium" EXACT []
synonym: "Unilaminar epithelium" EXACT []
xref: BILA:0000073
xref: CARO:0000073
xref: FMA:45561
xref: HAO:0000073
xref: ncithesaurus:Simple_Epithelium
xref: TAO:0001495
xref: ZFA:0001495
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0000491
name: solid compound organ
alt_id: UBERON:CARO_0000074-ZFA_0001491
def: "Compound organ that does not contain macroscopic anatomical spaces. // Compound organ that does not contain macroscopic anatomical spaces." [CARO:MAH, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: BILA:0000074
xref: CARO:0000074
xref: HAO:0000074
xref: TAO:0001491
xref: XAO:0003164
xref: ZFA:0001491
is_a: UBERON:0003103 ! compound organ
[Term]
id: UBERON:0000908
name: hippocampal commissure
alt_id: UBERON:Commissure-MA_0002723
def: "The lateral portions of the body of the fornix are joined by a thin triangular lamina, named the psalterium (lyra). This lamina contains some transverse fibers that connect the two hippocampi across the middle line and constitute the commissure of fornix (hippocampal commissure)." [Wikipedia:Hippocampal_commissure]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "commissure of fornix" RELATED [Wikipedia:Commissure_of_fornix]
xref: FMA:61970
xref: MA:0002723
xref: NULL:Commissure
is_a: UBERON:0000061 ! anatomical structure
relationship: attached_to UBERON:0001954 ! hippocampus
relationship: part_of UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0000909
name: cerebellum lobule vi
alt_id: UBERON:Declive-MA_0001003
comment: This class was created automatically from a combination of ontologies
synonym: "cerebellum lobule VI" EXACT []
synonym: "declive" RELATED []
xref: MA:0001003
xref: NULL:Declive
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0000910
name: chyme
alt_id: UBERON:ENVO_02000026-FMA_62961
def: "Chyme is a bodily fluid consisting of a liquid substance found in the stomach before passing through the pyloric valve and entering the duodenum. It results from the mechanical and chemical breakdown of a bolus and consists of partially digested food, water, hydrochloric acid, and various digestive enzymes." [Wikipedia:Chyme]
synonym: "chymus" EXACT [ENVO:02000026]
xref: ENVO:02000026
xref: FMA:62961
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000911
name: chyle
alt_id: UBERON:ENVO_02000030-FMA_61403
def: "Chyle is a bodily fluid consisting of a milky fluid consisting of lymph and emulsified fats; formed in the small intestine during digestion of ingested fats." [http://wordnet.princeton.edu/perl/webwn?s=chyle, Wikipedia:Chyle]
xref: ENVO:02000030
xref: FMA:61403
is_a: UBERON:0002391 ! lymph
[Term]
id: UBERON:0000912
name: mucus
alt_id: UBERON:ENVO_02000040-FMA_66938
def: "Mucus is a bodily fluid consisting of a slippery secretion of the lining of the mucous membranes in the body. It is a viscous colloid containing antiseptic enzymes (such as lysozyme) and immunoglobulins. Mucus is produced by goblet cells in the mucous membranes that cover the surfaces of the membranes. It is made up of mucins and inorganic salts suspended in water." [Wikipedia:Mucus]
xref: ENVO:02000040
xref: FMA:66938
xref: ncithesaurus:Mucus
xref: OpenCyc:Mx4rvVjHq5wpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000913
name: interstitial fluid
alt_id: UBERON:ENVO_02000042-FMA_9673
def: "Transudate which surrounds cells within a tissue. // Interstitial fluid is a bodily fluid consisting of a solution which bathes and surrounds the cells of multicellular animals. It is the main component of the extracellular fluid, which also includes plasma and transcellular fluid." [FMA:9673, Wikipedia:Interstitial_fluid]
synonym: "intercellular fluid" EXACT [ENVO:02000042]
synonym: "tissue fluid" EXACT [ENVO:02000042]
xref: ENVO:02000042
xref: FMA:9673
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0000914
name: segment
alt_id: UBERON:FBbt_00000003-FMA_11367-MIAA_0000271
def: "One of the repeated divisions of the whole organism." [FB:gg, Wikipedia:Segment]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FBbt:00000003
xref: HAO:0000929
xref: MAT:0000271
xref: MIAA:0000271
xref: ncithesaurus:Segmental
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000915
name: thorax
alt_id: UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295
def: "Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [ISBN:3110148986, Wikipedia:Thorax]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Thorax" EXACT []
synonym: "upper body" RELATED []
xref: BTO:0001368
xref: EFO:0000965
xref: FBbt:00000015
xref: FMA:9576
xref: GAID:91
xref: HAO:0001015
xref: MA:0000022
xref: MAT:0000295
xref: MIAA:0000295
xref: ncithesaurus:Thorax
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000916
name: abdomen
alt_id: UBERON:FBbt_00000020-FMA_9577-MA_0000029-MIAA_0000298
def: "In vertebrates such as mammals the abdomen (belly) constitutes the part of the body between the thorax (chest) and pelvis. The region enclosed by the abdomen is termed the abdominal cavity. In arthropods it is the most distal section of the body which lies behind the thorax or cephalothorax. //Dmel: The third large region of the insect body, which originally comprised twelve segments, each segment is usually formed by a dorsal tergite and a ventral sternite and carries on both sides a spiracle, sometimes, both the dorsal and the ventral plates are further subdivided to give rise to laterotergites and laterosternites. In the context of Drosophila refers to the most posterior of the three main tagmata or divisions of the body plan, after the head and the thorax. // Subdivision of trunk, which is demarcated from the thorax internally by the inferior surface of the sternocostal part of the diaphragm and externally by the costal margin, from the pelvis by the plane of the superior pelvic aperture and from the lower limbs by the inguinal folds; together with the thorax, pelvis, and perineum, it constitutes the trunk. Examples: There is only one abdomen." [FB:gg, ISBN:3110148986, Wikipedia:Abdomen]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Abdomen" EXACT []
synonym: "adult abdomen" RELATED []
synonym: "belly" RELATED []
xref: BTO:0000020
xref: EFO:0000213
xref: FBbt:00000020
xref: FMA:9577
xref: GAID:16
xref: galen:Abdomen
xref: HAO:0000015
xref: MA:0000029
xref: MAT:0000298
xref: MIAA:0000298
xref: OpenCyc:Mx4rvVjgyZwpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000917
name: abdominal segment
alt_id: UBERON:FBbt_00000021-SPD_0000055
xref: FBbt:00000021
xref: HAO:0000016
xref: SPD:0000055
is_a: UBERON:0000914 ! segment
intersection_of: UBERON:0000914 ! segment
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0000918
name: yolk
alt_id: UBERON:FBbt_00000035-MIAA_0000335-XAO_0000281
def: "The nutritive substance contained in the egg." [FB:gg, Wikipedia:Yolk]
comment: TODO - check - embryonic structure vs cell component
subset: uberon_slim
synonym: "vegetal yolk mass" BROAD []
synonym: "yolk cell" RELATED []
xref: FBbt:00000035
xref: GO:0060417 yolk
xref: MAT:0000335
xref: MIAA:0000335
xref: TAO:0000084
xref: XAO:0000281
xref: ZFA:0000084
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000919
name: lipid droplet
alt_id: UBERON:FBbt_00000037-FMA_62962
def: "Cell substance contained in lipid vacoule." []
comment: In GO this is a cellular component; in FMA it is a acellular anatomical structure. These two parent classes are disjoint in CARO
subset: uberon_slim
synonym: "Lipid droplet" EXACT []
xref: FBbt:00000037
xref: FMA:62962
xref: GO:0005811
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: part_of UBERON:0000918 ! yolk
[Term]
id: UBERON:0000920
name: chorion (egg)
alt_id: UBERON:FBbt_00000038-FMA_80224-ZFA_0000329
alt_id: UBERON:FMA_18674-MA_0001715
def: "A hard shell external to the vitelline membrane of the egg[FBbt]. The egg shell[ZFA]. A protective, noncellular membrane that surrounds the eggs of various animals including insects and fish [GO]." [FB:gg, GO:0042600, Wikipedia:Chorion_(egg)]
subset: uberon_slim
synonym: "chorion" RELATED []
xref: FBbt:00000038
xref: GO:0042600
xref: TAO:0000329
xref: ZFA:0000329
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: surrounds UBERON:0003125 ! vitelline membrane
[Term]
id: UBERON:0000921
name: pronucleus
alt_id: UBERON:FBbt_00000048-FMA_84673
def: "." [Wikipedia:Pronucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pronucleus" EXACT []
xref: FBbt:00000048
xref: FMA:84673
xref: GO:0045120
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0000922
name: embryo
alt_id: UBERON:FBbt_00000052-FMA_69068-MIAA_0000019-XAO_0000113
def: "Anatomical entity that comprises the organism in the early stages of growth and differentiation that are characterized by cleavage, the laying down of fundamental tissues, and the formation of primitive organs and organ systems. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant." [BTO:0000379, FB:FBrf0039741, FB:FBrf0041814, GO:0009790, Wikipedia:Embryo]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "developmental tissue" EXACT []
synonym: "Embryo" EXACT []
xref: BTO:0000379
xref: EFO:0001367
xref: EHDAA:38
xref: EV:0300001
xref: FBbt:00000052
xref: FMA:69068
xref: GAID:963
xref: MAT:0000226
xref: MIAA:0000019
xref: ncithesaurus:Embryo
xref: OGEM:000001
xref: OGES:000000
xref: OGES:000022
xref: XAO:0000113
xref: XAO:1000012
is_a: UBERON:0002050 ! embryonic structure
relationship: existence_ends_with UBERON:0000068 ! embryo stage
relationship: existence_starts_with UBERON:0000068 ! embryo stage
[Term]
id: UBERON:0000923
name: germ layer
alt_id: UBERON:FBbt_00000110-FMA_69069
alt_id: UBERON:XAO_0003011-ZFA_0001122
def: "A layer of cells produced during the process of gastrulation during the early development of the animal embryo, which is distinct from other such layers of cells, as an early step of cell differentiation. The three types of germ layers are the endoderm, ectoderm, and mesoderm." [Wikipedia:Germ_layer]
subset: uberon_slim
synonym: "embryonic germ layer" RELATED []
synonym: "embryonic germ layers" RELATED []
synonym: "Embryonic tissue" EXACT []
synonym: "embryonic tissue" EXACT []
synonym: "Germ layer" EXACT []
synonym: "germ layer" RELATED []
synonym: "primary germ layer" EXACT []
xref: AAO:0000480
xref: BILA:0000035
xref: BTO:0000556
xref: FBbt:00000110
xref: FMA:69069
xref: GAID:1303
xref: HOG:0001223
xref: ncithesaurus:Embryonic_Tissue
xref: TAO:0001122
xref: XAO:0003011
xref: ZFA:0001122
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0001048 ! primordium
relationship: develops_from UBERON:0002532 ! epiblast
[Term]
id: UBERON:0000924
name: ectoderm
alt_id: UBERON:FBbt_00000111-FMA_69070-MIAA_0000173-XAO_0000001-ZFA_0000016
def: "The outermost germ layer of the embryo. // Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [FB:gg, OMD:ectoderm, Wikipedia:Ectoderm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ectoderm" EXACT []
xref: AAO:0000137
xref: BILA:0000036
xref: BTO:0000315
xref: EFO:0000414
xref: EHDAA:1084
xref: EHDAA:1090
xref: EHDAA:132
xref: EHDAA:138
xref: EHDAA:1636
xref: EHDAA:1652
xref: EHDAA:1667
xref: EHDAA:1673
xref: EHDAA:1701
xref: EHDAA:2360
xref: EHDAA:538
xref: EHDAA:577
xref: EHDAA:585
xref: EHDAA:597
xref: EHDAA:609
xref: EHDAA:615
xref: EHDAA:621
xref: FBbt:00000111
xref: FMA:69070
xref: GAID:1304
xref: MAT:0000155
xref: MAT:0000173
xref: MIAA:0000173
xref: ncithesaurus:Ectoderm
xref: TAO:0000016
xref: XAO:0000001
xref: ZFA:0000016
is_a: UBERON:0000923 ! germ layer
[Term]
id: UBERON:0000925
name: endoderm
alt_id: UBERON:FBbt_00000125-FMA_69071-MIAA_0000175-XAO_0000090-ZFA_0000017
def: "The innermost germ layer of the embryo. // Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [FB:gg, OMD:endoderm, Wikipedia:Endoderm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Endoderm" EXACT []
synonym: "entoderm" RELATED []
xref: AAO:0000139
xref: BILA:0000038
xref: BTO:0000800
xref: EFO:0002545
xref: EHDAA:103
xref: EHDAA:1088
xref: EHDAA:1092
xref: EHDAA:1638
xref: EHDAA:1654
xref: EHDAA:166
xref: EHDAA:1671
xref: EHDAA:1675
xref: EHDAA:524
xref: EHDAA:530
xref: EHDAA:540
xref: EHDAA:581
xref: EHDAA:587
xref: EHDAA:599
xref: EHDAA:619
xref: EHDAA:623
xref: FBbt:00000125
xref: FMA:69071
xref: GAID:1305
xref: MAT:0000175
xref: MIAA:0000175
xref: ncithesaurus:Endoderm
xref: TAO:0000017
xref: XAO:0000090
xref: ZFA:0000017
is_a: UBERON:0000923 ! germ layer
[Term]
id: UBERON:0000926
name: mesoderm
alt_id: UBERON:FBbt_00000126-FMA_69072-MIAA_0000174-XAO_0000050-ZFA_0000041
def: "The middle germ layer of the embryo, between the endoderm and ectoderm. // Primary germ layer that is the middle of the embryo's three germ layers." [FB:gg, OMD:mesoderm, Wikipedia:Mesoderm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Mesoderm" EXACT []
synonym: "mesodermal mantle" RELATED []
xref: AAO:0000304
xref: BILA:0000037
xref: BTO:0000839
xref: EFO:0001981
xref: EHDAA:124
xref: EHDAA:140
xref: EHDAA:154
xref: EHDAA:160
xref: EHDAA:168
xref: EHDAA:183
xref: FBbt:00000126
xref: FMA:69072
xref: GAID:522
xref: MAT:0000174
xref: MIAA:0000174
xref: ncithesaurus:Mesoderm
xref: TAO:0000041
xref: XAO:0000050
xref: ZFA:0000041
is_a: UBERON:0000923 ! germ layer
[Term]
id: UBERON:0000927
name: mesectoderm
alt_id: UBERON:FBbt_00000136-MIAA_0000243
def: "A double row of cells which are located at the midline from the end of gastrulations. The morphology of these cells is distinct from adjacent ectodermal cells - they are elongated such that one end remains exposed to the outside of the embryo at the mideline while the other end bissects the internalised mesoderm." [FB:FBrf0089570]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "MesEc" RELATED []
xref: FBbt:00000136
xref: MAT:0000243
xref: MIAA:0000243
is_a: UBERON:0000923 ! germ layer
relationship: adjacent_to UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0000928
name: embryonic segment
alt_id: UBERON:FBbt_00000154-MIAA_0000244
comment: This class was created automatically from a combination of ontologies
synonym: "segment - embryonic" EXACT []
xref: FBbt:00000154
xref: MAT:0000244
xref: MIAA:0000244
is_a: UBERON:0000914 ! segment
intersection_of: UBERON:0000914 ! segment
intersection_of: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0000929
name: pharyngeal branch
alt_id: UBERON:FBbt_00000394-FMA_6234
def: "Motor nerve of the pharynx, arises from the upper part of the ganglion nodosum, and consists principally of filaments from the cranial portion of the accessory nerve." [Wikipedia:Pharyngeal_branch_of_vagus_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pharyngeal branch" EXACT []
synonym: "Pharyngeal branch of inferior vagal ganglion" EXACT []
synonym: "pharyngeal branch of inferior vagal ganglion" EXACT []
synonym: "Pharyngeal branch of vagus" EXACT []
synonym: "pharyngeal branch of vagus" EXACT []
synonym: "Pharyngeal branch of vagus nerve" EXACT []
synonym: "pharyngeal branch of vagus nerve" EXACT []
synonym: "Ramus pharyngealis nervi vagalis" EXACT []
synonym: "ramus pharyngealis nervi vagalis" EXACT []
synonym: "Tenth cranial nerve pharyngeal branch" EXACT []
synonym: "tenth cranial nerve pharyngeal branch" EXACT []
synonym: "Vagal pharyngeal branch" EXACT []
synonym: "vagal pharyngeal branch" EXACT []
synonym: "Vagus nerve pharyngeal branch" EXACT []
synonym: "vagus nerve pharyngeal branch" EXACT []
xref: FMA:6234
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0003443 ! implied link automatically realized ! thoracic cavity nerve
relationship: part_of UBERON:0001005 ! trachea
relationship: part_of UBERON:0001759 ! vagus nerve
[Term]
id: UBERON:0000930
name: stomodeum
alt_id: UBERON:FBbt_00000439-ZFA_0001290
def: "Wikipedia: Depression between the brain and the pericardium in an embryo, and is the precursor of the mouth and the anterior lobe of the pituitary gland." [Wikipedia:Stomodeum]
subset: uberon_slim
synonym: "stomatodeum" EXACT [Wikipedia:Stomodeum]
xref: FBbt:00000439
xref: ncithesaurus:Stomodeum
xref: ZFA:0001290
relationship: part_of UBERON:0001555 ! gut
[Term]
id: UBERON:0000931
name: proctodeum
alt_id: UBERON:FBbt_00000440-WBbt_0006795
def: "The posterior part of the alimentary canal that is derived from the amnioproctodeal invagination of the ectoderm. // junction between the alimentary and genital tracts in the male." [FB:gg, WB:Paper00000462, Wikipedia:Proctodeum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FBbt:00000440
xref: HOG:0000139
xref: ncithesaurus:Proctodeum
xref: WBbt:0006795
xref: XAO:0001019
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0001046 ! hindgut
[Term]
id: UBERON:0000932
name: ventral longitudinal muscle
alt_id: UBERON:FBbt_00000482-WBbt_0005814
comment: This class was created automatically from a combination of ontologies
xref: FBbt:00000482
xref: WBbt:0005814
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0000990 ! reproductive system
[Term]
id: UBERON:0000933
name: pharyngeal muscle
alt_id: UBERON:FBbt_00000487-FMA_46619-MA_0001797
def: "A muscle that forms part of the pharynx." [GO:0043282]
comment: TODO: this is probably an inappropriate grouping term. In drosophila this is a cell. In mammals an organ.
synonym: "Muscle of pharynx" EXACT []
synonym: "muscle of pharynx" EXACT []
synonym: "Pharyngeal muscle" EXACT []
synonym: "pharynx muscle" EXACT []
xref: BTO:0001048
xref: FBbt:00000487
xref: FMA:46619
xref: GAID:154
xref: MA:0001797
xref: ncithesaurus:Pharyngeal_Muscle
is_a: UBERON:0002377 ! muscle of neck
is_a: UBERON:0003831 ! implied link automatically realized ! respiratory system muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001042 ! pharynx
relationship: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0000934
name: ventral nerve cord
alt_id: UBERON:FBbt_00001102-MIAA_0000339-WBbt_0005829
def: "a large process bundle that runs along the vental mid-line extending from the ventral region of the nerve ring." [WB:Paper00000938, Wikipedia:Ventral_nerve_cord]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ventral cord" RELATED []
xref: BTO:0002328
xref: EFO:0000896
xref: FBbt:00001102
xref: MAT:0000339
xref: MIAA:0000339
xref: WBbt:0005829
is_a: UBERON:0000045 ! ganglion
[Term]
id: UBERON:0000935
name: anterior commissure
alt_id: UBERON:FBbt_00001105-FMA_61961-MA_0002722-ZFA_0001108
def: "bundle of nerve fibers (white matter), connecting the two cerebral hemispheres across the midline, and placed in front of the columns of the fornix. The great majority of fibers connecting the two hemispheres travel through the corpus callosum, which is over 10 times larger than the anterior commissure, and other routes of communication pass through the hippocampal commissure or, indirectly, via subcortical connections. Nevertheless, the anterior commissure is a significant pathway that can be clearly distinguished in the brains of all mammals." [Wikipedia:Anterior_commissure]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anterior commissure" EXACT []
synonym: "commissura anterior" RELATED []
synonym: "commissura rostral" RELATED []
synonym: "Commissura rostralis" EXACT []
synonym: "commissura rostralis" EXACT []
synonym: "precommisure" RELATED [Wikipedia:Anterior_commisure]
synonym: "rostral commissure" RELATED []
xref: BTO:0002169
xref: FMA:61961
xref: MA:0002722
xref: ncithesaurus:Anterior_Commissure
xref: TAO:0001108
xref: ZFA:0001108
is_a: UBERON:0002473 ! intercerebral commissure
[Term]
id: UBERON:0000936
name: posterior commissure
alt_id: UBERON:FBbt_00001120-FMA_62072-MA_0002743-ZFA_0000320
def: "Rounded band of white fibers crossing the middle line on the dorsal aspect of the upper end of the cerebral aqueduct. It is important in the bilateral pupillary light reflex." [Wikipedia:Posterior_commissure]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Caudal commissure" EXACT []
synonym: "caudal commissure" EXACT []
synonym: "Epithalamic commissure" EXACT []
synonym: "epithalamic commissure" EXACT []
synonym: "Posterior commissure" EXACT []
xref: FMA:62072
xref: MA:0002743
xref: ncithesaurus:Posterior_Commissure
xref: NIF_GrossAnatomy:birnlex_1026
xref: TAO:0000320
xref: ZFA:0000320
is_a: UBERON:0001020 ! commissure
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0000934 ! ventral nerve cord
relationship: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0000937
name: proneural cluster
alt_id: UBERON:FBbt_00001135-ZFA_0000068
synonym: "proneural clusters" RELATED [ZFA:0000068]
xref: FBbt:00001135
xref: ZFA:0000068
relationship: part_of UBERON:0003075 ! neural plate
[Term]
id: UBERON:0000939
name: imaginal disc
alt_id: UBERON:FBbt_00001761-MIAA_0000064
def: "A tissue in the larva which gives rise to the adult external cuticle." [FB:gg, Wikipedia:Imaginal_disc]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "imaginal disk" RELATED []
xref: FBbt:00001761
xref: MAT:0000064
xref: MIAA:0000064
is_a: UBERON:0000481 ! multi-tissue structure
[Term]
id: UBERON:0000941
name: optic nerve
alt_id: UBERON:FBbt_00001956-FMA_50863-MA_0001097-XAO_0000188-ZFA_0000435
def: "Nerve trunk which is continuous with the retina and the optic chiasm. // Cranial nerve that runs to the eye. // Cranial nerve which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. // transmits visual information from the retina to the brain." [ISBN:0471209627, Wikipedia:Optic_nerve, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CN-II" RELATED []
synonym: "cranial nerve II" RELATED []
synonym: "optic" RELATED []
synonym: "optic II nerve" EXACT []
synonym: "optic ii nerve" EXACT []
synonym: "Optic nerve" EXACT []
synonym: "Optic nerve [II]" EXACT []
synonym: "optic nerve [ii]" EXACT []
synonym: "Second cranial nerve" EXACT []
synonym: "second cranial nerve" EXACT []
xref: BTO:0000966
xref: EHDAA:6788
xref: FBbt:00001956
xref: FMA:50863
xref: GAID:831
xref: HOG:0000543
xref: MA:0001097
xref: ncithesaurus:Optic_Nerve
xref: NIF_GrossAnatomy:birnlex_1640
xref: OpenCyc:Mx4rvVjLm5wpEbGdrcN5Y29ycA
xref: TAO:0000435
xref: XAO:0000188
xref: ZFA:0000435
is_a: UBERON:0001785 ! cranial nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000970 ! eye
relationship: continuous_with UBERON:0000966 ! retina
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0000942
name: frontal nerve
alt_id: UBERON:FBbt_00002630-FMA_52638
def: "." [Wikipedia:Frontal_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Frontal nerve" EXACT []
xref: FBbt:00002630
xref: FMA:52638
xref: ncithesaurus:Frontal_Nerve
is_a: UBERON:0001021 ! nerve
[Term]
id: UBERON:0000943
name: labial sensillum
alt_id: UBERON:FBbt_00002721-WBbt_0005107
def: "sensillum of inner or outer labial." [WB:rynl]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FBbt:00002721
xref: WBbt:0005107
is_a: UBERON:0002536 ! arthropod sensillum
[Term]
id: UBERON:0000944
name: dorsal branch
alt_id: UBERON:FBbt_00003051-FMA_76733
comment: This class was created automatically from a combination of ontologies
synonym: "Dorsal branch" EXACT []
synonym: "Dorsal vein" EXACT []
synonym: "dorsal vein" EXACT []
xref: FBbt:00003051
xref: FMA:76733
is_a: UBERON:0001005 ! trachea
[Term]
id: UBERON:0000945
name: stomach
alt_id: UBERON:FBbt_00003138-FMA_7148-MA_0000353-MIAA_0000051-XAO_0000128
def: "The middle region of the alimentary canal, the epithelium of which is lined with peritrophic membrane (not chitinous intima as for the foregut and hindgut. // Organ with organ cavity which is continuous proximally with the esophagus and distally with the small intestine. Examples: There is only one stomach. // Internal organ that is the dilated portion of the alimentary tract situated between the esophagus and the beginning of the duodenum. It produces gastric juices involved in the breakdown of food." [FB:FBrf0007735, OMD:stomach, Wikipedia:Stomach]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior intestine" RELATED []
synonym: "mesenteron" RELATED []
synonym: "Stomach" EXACT []
synonym: "stomach" RELATED []
synonym: "ventriculus" EXACT []
xref: AAO:0000579
xref: BTO:0001307
xref: EFO:0000837
xref: EHDAA:2993
xref: FMA:7148
xref: GAID:293
xref: HOG:0000408
xref: MA:0000353
xref: MAT:0000051
xref: MIAA:0000051
xref: ncithesaurus:Stomach
xref: OpenCyc:Mx4rvVjlqpwpEbGdrcN5Y29ycA
xref: XAO:0000128
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001041 ! foregut
[Term]
id: UBERON:0000946
name: cardial valve
alt_id: UBERON:FBbt_00003140-FMA_7110-MA_0000086-ZFA_0005065
def: "A deep fold in the foregut epithelium enclosed by the ventricular wall which makes up the outer layer of the cardia. The space between the two layers of this fold is filled with longitudinal muscle fibers. The stomodeal intima continues over both layers. The cells of the epithelium are cuboidal to columnar and are vacuolate. // Anatomical valve which has as its parts the endocardium and fibroelastic connective tissue attached to the fibrous ring of heart." [FB:FBrf007735, Wikipedia:Cardiac_valve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cardiac valve" EXACT []
synonym: "cardiac valve" RELATED []
synonym: "Heart valve" EXACT []
synonym: "heart valve" EXACT []
synonym: "heart valves" RELATED []
synonym: "stomodaeal valve" RELATED []
synonym: "Valve of heart" EXACT []
synonym: "valve of heart" EXACT []
xref: BTO:0000564
xref: FBbt:00003140
xref: FMA:7110
xref: GAID:176
xref: galen:HeartValve
xref: HOG:0000818
xref: MA:0000086
xref: ncithesaurus:Cardiac_Valve
xref: OpenCyc:Mx4rv8oyuJwpEbGdrcN5Y29ycA
xref: TAO:0005065
xref: ZFA:0005065
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0000947
name: aorta
alt_id: UBERON:FBbt_00003153-FMA_3734-MA_0000062-MA_0000476-MIAA_0000035-XAO_0003010-ZFA_0000014
def: "Artery carrying blood from the heart to all the organs and other structures of the body, bringing oxygenated blood to all parts of the body in the systemic circulation" [Wikipedia:Aorta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adult aorta" EXACT []
synonym: "Aorta" EXACT []
synonym: "DA" RELATED []
synonym: "dorsal aorta" EXACT []
synonym: "Trunk of aortic tree" EXACT []
synonym: "trunk of aortic tree" EXACT []
synonym: "Trunk of systemic arterial tree" EXACT []
synonym: "trunk of systemic arterial tree" EXACT []
xref: BTO:0000135
xref: EFO:0000265
xref: EHDAA:402
xref: FBbt:00003153
xref: FMA:3734
xref: GAID:469
xref: galen:Aorta
xref: HOG:0000264
xref: MA:0000062
xref: MA:0000476
xref: MAT:0000035
xref: MIAA:0000035
xref: ncithesaurus:Aorta
xref: OpenCyc:Mx4rvVjvTpwpEbGdrcN5Y29ycA
xref: TAO:0000014
xref: XAO:0003010
xref: ZFA:0000014
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0000948
name: heart
alt_id: UBERON:FBbt_00003154-FMA_7088-MA_0000072-MIAA_0000036-XAO_0000064-ZFA_0000114
def: "A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood[GO]." [GO:0007507]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Heart" EXACT []
synonym: "heart" EXACT []
xref: BILA:0000020
xref: BTO:0000562
xref: EFO:0000815
xref: EHDAA:420
xref: FBbt:00003154
xref: FMA:7088
xref: GAID:174
xref: galen:Heart
xref: HOG:0000276
xref: MA:0000072
xref: MAT:0000036
xref: MIAA:0000036
xref: ncithesaurus:Heart
xref: OpenCyc:Mx4rvVjvDpwpEbGdrcN5Y29ycA
xref: TAO:0000114
xref: XAO:0000064
xref: ZFA:0000114
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002075 ! viscus
relationship: part_of UBERON:0001009 ! circulatory system
relationship: part_of UBERON:0002323 ! body cavity
[Term]
id: UBERON:0000949
name: endocrine system
alt_id: UBERON:FBbt_00003214-FBbt_00005068-FMA_9668-MA_0000012-XAO_0000158-ZFA_0001158
def: "Anatomical system that consists of the glands and parts of glands that produce endocrine secretions and help to integrate and control bodily metabolic activity." [NLM:endocrine+system, Wikipedia:Endocrine_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Endocrine system" EXACT []
synonym: "endocrine system" EXACT []
synonym: "exocrine system" BROAD []
synonym: "Systema endocrinum" EXACT []
synonym: "systema endocrinum" EXACT []
xref: FBbt:00003214
xref: FBbt:00005068
xref: FMA:9668
xref: GAID:439
xref: HOG:0000098
xref: MA:0000012
xref: ncithesaurus:Endocrine_System
xref: TAO:0001158
xref: XAO:0000158
xref: ZFA:0001158
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
[Term]
id: UBERON:0000950
name: gracilis
alt_id: UBERON:FBbt_00003277-FMA_43882-MA_0002311
def: "The most superficial muscle on the medial side of the thigh. It is thin and flattened, broad above, narrow and tapering below. It arises by a thin aponeurosis from the anterior margins of the lower half of the symphysis pubis and the upper half of the pubic arch." [Wikipedia:Gracilis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gracilis muscle" EXACT []
xref: BTO:0000536
xref: FMA:43882
xref: galen:Gracilis
xref: MA:0002311
xref: ncithesaurus:Gracilis
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0000951
name: rotator muscle
alt_id: UBERON:FBbt_00003314-FMA_23081
comment: This class was created automatically from a combination of ontologies
synonym: "Rotator muscle" EXACT []
xref: FMA:23081
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0000952
name: adductor muscle
alt_id: UBERON:FBbt_00003317-FMA_74998
def: "Muscle that causes adduction can be called an adductor muscle. For example in biology, the muscle or muscles in the interior of a bivalve mollusk which serve to close the valves are called adductor muscles, and the large foot to shell muscle in gastropods such as the abalone and limpet is also known as an adductor muscle." [Wikipedia:Adductor_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Adductor muscle" EXACT []
synonym: "Adductor muscle of hip" NARROW []
xref: FBbt:00003317
xref: FMA:74998
xref: ZFA:0005268
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0000953
name: visceral muscle
alt_id: UBERON:FBbt_00003525-MIAA_0000303-XAO_0000175
def: "." [Wikipedia:Smooth_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adult visceral muscle" RELATED []
synonym: "smooth muscle" EXACT []
xref: BTO:0001260
xref: EFO:0000889
xref: FBbt:00003525
xref: GAID:167
xref: HOG:0001246
xref: MAT:0000303
xref: MIAA:0000303
xref: WBbt:0005781
xref: XAO:0000175
xref: ZFA:0005274
is_a: UBERON:0001630 ! muscle organ
relationship: develops_from UBERON:0003081 ! lateral plate mesoderm
[Term]
id: UBERON:0000954
name: intestine muscle
alt_id: UBERON:FBbt_00003537-WBbt_0005796
def: "intestinal muscle cell, attach to intestine and body wall anterior to anus" [WB:Paper00000653]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intestinal muscle" EXACT []
xref: BTO:0000643
xref: FBbt:00003537
xref: WBbt:0005796
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000953 ! visceral muscle
is_a: UBERON:0002378 ! implied link automatically realized ! muscle of abdomen
relationship: part_of UBERON:0000160 ! intestine
[Term]
id: UBERON:0000955
name: brain
alt_id: UBERON:FBbt_00003624-FBbt_00005095-FMA_50801-MA_0000168-MIAA_0000098-MIAA_0000341-WBbt_0005440-XAO_0000010-ZFA_0000008
def: "The supra-esophageal ganglion of the central nervous system, composed of three primitive ganglia known as protocerebrum, deutocerebrum and tritocerebrum. In the context of Drosophila refers to the preoral ganglionic mass of the central nervous system containing the ventral ganglia. // Organ component of neuraxis that has as its parts gray matter and white matter that surround the cerebral ventricular system; Examples: There is only one brain. // Organ that is a component of the central nervous system and is responsible for the coordination and control of bodily activities and the interpretation of information from the senses. It appears when the neural tube segregates in forebrain, midbrain, and hindbrain at NF stage 22. The general pattern of the brain has been mainly established at NF stage 28. Yolky material is consumed and the fibre tracts and later the commissures develop. In general all of its parts are well developed at NF stage 53 and later development consists mainly of growth and some further cytological differentiation. In the period of metamorphosis only topographical changes take place." [FB:gg, ISBN:0815318960, ISBN:3110148986, OMD:brain, Wikipedia:Brain]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Brain" EXACT []
synonym: "brain" EXACT []
synonym: "central nervous system" RELATED []
synonym: "synganglion" RELATED []
xref: BILA:0000135
xref: BTO:0000142
xref: EFO:0000302
xref: EHDAA:2641
xref: EHDAA:6485
xref: FBbt:00003624
xref: FBbt:00005095
xref: FMA:50801
xref: GAID:571
xref: galen:Brain
xref: HOG:0000157
xref: MA:0000168
xref: MAT:0000098
xref: MIAA:0000098
xref: ncithesaurus:Brain
xref: NIF_GrossAnatomy:birnlex_796
xref: OpenCyc:Mx4rvVjT65wpEbGdrcN5Y29ycA
xref: TAO:0000008
xref: XAO:0000010
xref: ZFA:0000008
is_a: UBERON:0000489 ! cavitated compound organ
relationship: develops_from UBERON:0001049 ! neural tube
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0000956
name: cerebral cortex
alt_id: UBERON:FBbt_00003625-FMA_61830-MA_0000185-MIAA_0000108
def: "." [Wikipedia:Cerebral_cortex]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cerebral cortex" EXACT []
synonym: "Cortex of cerebral hemisphere" EXACT []
synonym: "cortex of cerebral hemisphere" EXACT []
xref: BTO:0000233
xref: EFO:0000328
xref: EHDAA:5464
xref: FBbt:00003625
xref: FMA:61830
xref: GAID:629
xref: HOG:0000722
xref: MA:0000185
xref: MAT:0000108
xref: MIAA:0000108
xref: ncithesaurus:Cortex
xref: NIF_GrossAnatomy:birnlex_1494
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001869 ! cerebral hemisphere
[Term]
id: UBERON:0000957
name: lamina
alt_id: UBERON:FBbt_00003708-FMA_67265
def: "Any thin layer or plate. In the context of Drosophila refers to the first optic neuropil." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Lamina]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "La" RELATED []
synonym: "Lamin A" EXACT []
synonym: "lamin a" EXACT []
xref: FBbt:00003708
xref: FMA:67265
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0000958
name: medulla
alt_id: UBERON:FBbt_00003748-FMA_61108
def: "Middle part of an organ (as opposed to the cortex)[WP]." [Wikipedia:Medulla]
comment: This class is used in a very general sense
subset: uberon_slim
synonym: "Medulla" EXACT []
xref: FMA:61108
is_a: UBERON:0000471 ! compound organ component
relationship: surrounded_by UBERON:0001851 ! cortex
[Term]
id: UBERON:0000959
name: optic chiasma
alt_id: UBERON:FBbt_00003921-FMA_62045-MA_0001098-ZFA_0000556
def: "The projection of axons between the lamina and medulla (1st optric chiasma) or between the medulla and lobula (2nd optic chiasma). The linear order of axons along each horizontal row of retinotopic columns (see optic cartridges) is reversed by the chiasma. // Nerve trunk which is continuous with right and left optic nerves and right and left optic tracts. // Decussation of cranial nerve II axons whereby some cross the midline and some remain ipsilateral." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Optic_chiasma, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Decussation of optic nerve fibers" EXACT []
synonym: "decussation of optic nerve fibers" EXACT []
synonym: "Optic chiasm" EXACT []
synonym: "optic chiasm" EXACT []
synonym: "Optic chiasma" EXACT []
xref: EHDAA:10227
xref: FBbt:00003921
xref: FMA:62045
xref: GAID:832
xref: HOG:0000190
xref: MA:0001098
xref: NIF_GrossAnatomy:birnlex_1416
xref: TAO:0000556
xref: ZFA:0000556
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0000941 ! optic nerve
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0000960
name: pharyngeal nerve
alt_id: UBERON:FBbt_00004021-FMA_77524-WBbt_0005441
def: "." [Wikipedia:Pharyngeal_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pharyngeal nerve" EXACT []
xref: FBbt:00004021
xref: FMA:77524
xref: WBbt:0005441
is_a: UBERON:0001021 ! nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0000961
name: thoracic ganglion
alt_id: UBERON:FBbt_00004052-FMA_6471-MA_0001159
def: "." [Wikipedia:Thoracic_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Thoracic ganglion" EXACT []
synonym: "Thoracic paravertebral ganglion" EXACT []
synonym: "thoracic paravertebral ganglion" EXACT []
synonym: "Thoracic splanchnic ganglion" EXACT []
synonym: "thoracic splanchnic ganglion" EXACT []
synonym: "Thoracic sympathetic ganglion" EXACT []
synonym: "thoracic sympathetic ganglion" EXACT []
xref: BTO:0001831
xref: FBbt:00004052
xref: FMA:6471
xref: HOG:0000515
xref: MA:0001159
xref: ncithesaurus:Thoracic_Ganglion
is_a: UBERON:0001807 ! paravertebral ganglion
is_a: UBERON:0003339 ! implied link automatically realized ! ganglion of central nervous system
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0000915 ! thorax
relationship: part_of UBERON:0000915 ! thorax
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0000962
name: cervical nerve
alt_id: UBERON:FBbt_00004053-FMA_5859
def: "." [Wikipedia:Cervical_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cervical nerve" EXACT []
synonym: "Cervical nerve tree" EXACT []
synonym: "cervical nerve tree" EXACT []
synonym: "Cervical spinal nerve" EXACT []
synonym: "cervical spinal nerve" EXACT []
xref: FBbt:00004053
xref: FMA:5859
xref: ncithesaurus:Cervical_Nerve
is_a: UBERON:0001780 ! spinal nerve
is_a: UBERON:0003266 ! implied link automatically realized ! nerve of central nervous system
is_a: UBERON:0003444 ! implied link automatically realized ! pelvis nerve
is_a: UBERON:0003824 ! implied link automatically realized ! thoracic segment nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000002 ! cervix
relationship: part_of UBERON:0000961 ! thoracic ganglion
[Term]
id: UBERON:0000963
name: head sensillum
alt_id: UBERON:FBbt_00004114-MIAA_0000204
comment: This class was created automatically from a combination of ontologies
xref: FBbt:00004114
xref: MAT:0000204
xref: MIAA:0000204
is_a: UBERON:0002536 ! arthropod sensillum
[Term]
id: UBERON:0000964
name: cornea
alt_id: UBERON:FBbt_00004191-FMA_58238-MA_0000266-XAO_0000180-ZFA_0000640
def: "transparent front part of the eye that covers the iris, pupil, and anterior chamber. Together with the lens, the cornea refracts light, accounting for approximately two-thirds of the eye's total optical power." [Wikipedia:Cornea]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cornea" EXACT []
synonym: "tunica cornea" RELATED []
xref: BTO:0000286
xref: EFO:0000377
xref: EHDAA:10199
xref: FBbt:00004191
xref: FMA:58238
xref: GAID:892
xref: HOG:0000164
xref: MA:0000266
xref: ncithesaurus:Cornea
xref: OpenCyc:Mx4rvViBa5wpEbGdrcN5Y29ycA
xref: TAO:0000640
xref: XAO:0000180
xref: ZFA:0000640
is_a: UBERON:0003102 ! surface structure
relationship: part_of UBERON:0000965 ! lens
[Term]
id: UBERON:0000965
name: lens
alt_id: UBERON:FBbt_00004199-FMA_58241-MA_0000275-MIAA_0000141-XAO_0000008-ZFA_0000035
def: "Transparent part of eye that helps to refract light to be focused on the retina." [Wikipedia:Lens_(anatomy)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "eye lens" EXACT []
synonym: "Lens" EXACT []
xref: BTO:0000723
xref: EHDAA:9057
xref: FMA:58241
xref: HOG:0000169
xref: MA:0000275
xref: MAT:0000141
xref: MIAA:0000141
xref: ncithesaurus:Crystalline_Lens
xref: TAO:0000035
xref: XAO:0000008
xref: ZFA:0000035
is_a: UBERON:0000064 ! organ part
relationship: develops_from UBERON:0003073 ! lens placode
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
[Term]
id: UBERON:0000966
name: retina
alt_id: UBERON:FBbt_00004200-FMA_58301-MA_0000276-MIAA_0000142-XAO_0000009-ZFA_0000152
def: "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates. // The array of photoreceptors & the cells that support them in a compound eye. // Layer of wall of eyeball which is continuous with optic nerve. // Sensory membrane that lines the posterior chamber of the eye and functions as the immediate instrument of vision by receiving the image formed by the lens and converting it into chemical and nervous signals which reach the brain by way of the optic nerve. // The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995." [FB:ds, NLM:retina, Wikipedia:Retina, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Inner layer of eyeball" EXACT []
synonym: "inner layer of eyeball" EXACT []
synonym: "Retina" EXACT []
synonym: "Tunica interna of eyeball" EXACT []
synonym: "tunica interna of eyeball" EXACT []
xref: BTO:0001175
xref: EFO:0000832
xref: EHDAA:4757
xref: FBbt:00004200
xref: FMA:58301
xref: GAID:755
xref: HOG:0000229
xref: MA:0000276
xref: MAT:0000142
xref: MIAA:0000142
xref: ncithesaurus:Retina
xref: NIF_GrossAnatomy:birnlex_1153
xref: NIF_GrossAnatomy:birnlex_1156
xref: OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA
xref: TAO:0000152
xref: XAO:0000009
xref: ZFA:0000152
is_a: UBERON:0000481 ! multi-tissue structure
relationship: develops_from UBERON:0003072 ! eye vesicle
relationship: part_of UBERON:0001802 ! posterior segment of eyeball
[Term]
id: UBERON:0000967
name: adult thoracic sensillum
alt_id: UBERON:FBbt_00004245-MIAA_0000205
comment: This class was created automatically from a combination of ontologies
synonym: "thoracic sensillum" EXACT []
xref: FBbt:00004245
xref: MAT:0000205
xref: MIAA:0000205
is_a: UBERON:0002536 ! arthropod sensillum
intersection_of: UBERON:0002536 ! arthropod sensillum
intersection_of: part_of UBERON:0000915 ! thorax
relationship: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0000968
name: adult abdominal sensillum
alt_id: UBERON:FBbt_00004461-MIAA_0000206
comment: This class was created automatically from a combination of ontologies
synonym: "abdominal sensillum" EXACT []
xref: FBbt:00004461
xref: MAT:0000206
xref: MIAA:0000206
is_a: UBERON:0002536 ! arthropod sensillum
intersection_of: UBERON:0002536 ! arthropod sensillum
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0000969
name: suture
alt_id: UBERON:FBbt_00004479-FMA_7493-MA_0001475
def: "The meeting line of two primary body plates, as a rule forming a furrow-like impression. // Fibrous joint in which the articulating bones or cartilages of the skull are connected by sutural ligaments (scant amount of collagenous dense connective tissue). Examples: sagittal suture, frontal suture." [ISBN:3110148986, Wikipedia:Suture]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Suture" EXACT []
xref: FBbt:00004479
xref: FMA:7493
xref: HAO:0000982
is_a: UBERON:0002209 ! fibrous joint
[Term]
id: UBERON:0000970
name: eye
alt_id: UBERON:FBbt_00004508-FMA_54448-MA_0000261-MIAA_0000140-XAO_0000179-ZFA_0000107
def: "organ that detects light" [http://en.wikipedia.org/wiki/Eye, UBERON:cjm, Wikipedia:Eye]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Eye" EXACT []
synonym: "eyes" RELATED []
synonym: "visual apparatus" RELATED []
xref: BILA:0000017
xref: BTO:0000439
xref: EFO:0000827
xref: FMA:54448
xref: GAID:69
xref: HOG:0000275
xref: MAT:0000140
xref: MIAA:0000140
xref: ncithesaurus:Eye
xref: NIF_GrossAnatomy:birnlex_1169
xref: OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0002104 ! visual system
[Term]
id: UBERON:0000971
name: ommatidium
alt_id: UBERON:FBbt_00004510-MIAA_0000143
def: "One of the small facets of the compound eye." [ISBN:3110148986, Wikipedia:Ommatidium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "omatidium" EXACT []
xref: BTO:0001922
xref: FBbt:00004510
xref: HAO:0000666
xref: MAT:0000143
xref: MIAA:0000143
is_a: UBERON:0002536 ! arthropod sensillum
relationship: has_part UBERON:0000965 ! lens
relationship: part_of UBERON:0000018 ! compound eye
[Term]
id: UBERON:0000972
name: antenna
alt_id: UBERON:FBbt_00004511-MIAA_0000086
def: "The paired, usually multiple jointed, sensory organs articulating on the procephalic region of the head capsule; its highly versatile sensory structures are capable to detect the various environmental stimuli. In the context of Drosophila refers to they are the most anterior segmented sensory appendage of the head." [FB:gg, ISBN:3110148986, Wikipedia:Antenna]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000074
xref: EFO:0000874
xref: FBbt:00004511
xref: HAO:0000101
xref: MAT:0000086
xref: MIAA:0000086
is_a: UBERON:0000026 ! appendage
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0000973
name: labrum
alt_id: UBERON:FBbt_00004522-FMA_76808
is_obsolete: true
[Term]
id: UBERON:0000974
name: neck
alt_id: UBERON:FBbt_00004550-FMA_7155-MA_0000024-MIAA_0000297
def: "Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck." [Wikipedia:Neck]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Neck" EXACT []
synonym: "Neck (volume)" EXACT []
synonym: "neck (volume)" EXACT []
xref: BTO:0000420
xref: EFO:0000967
xref: FBbt:00004550
xref: FMA:7155
xref: GAID:86
xref: MA:0000024
xref: MAT:0000297
xref: MIAA:0000297
xref: ncithesaurus:Neck
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0000975
name: vertebrate sternum
alt_id: UBERON:FBbt_00004557-FMA_7485-MA_0001331
def: "Long flat bone shaped like a capital 'T' located in the center of the thorax (chest)." [ISBN:3110148986, Wikipedia:Sternum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sternum" EXACT []
xref: AAO:0000765
xref: BTO:0001302
xref: FBbt:00004557
xref: FMA:7485
xref: GAID:246
xref: HAO:0000956
xref: HOG:0000856
xref: MA:0001331
xref: ncithesaurus:Sternum
xref: OpenCyc:Mx4rvVjO6JwpEbGdrcN5Y29ycA
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003827 ! implied link automatically realized ! thoracic segment bone
relationship: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0000976
name: postpronotum
alt_id: UBERON:FBbt_00004562-FMA_13303-MA_0001356
def: "Long bone which is part of the arm." [Wikipedia:Humerus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "humeral callus" RELATED []
synonym: "Humerus" EXACT []
synonym: "humerus" RELATED []
synonym: "prescutal lobe" RELATED []
xref: AAO:0000679
xref: EFO:0001398
xref: FBbt:00004562
xref: FMA:13303
xref: GAID:183
xref: galen:Humerus
xref: HOG:0001158
xref: MA:0001356
xref: ncithesaurus:Humerus
is_a: UBERON:0001440 ! skeleton of upper limb
relationship: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0000977
name: mesothoracic pleurum
alt_id: UBERON:FBbt_00004591-FMA_9583-MA_0000433
def: "." [Wikipedia:Pleura]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pleura" EXACT []
synonym: "pleura" RELATED []
synonym: "Wall of pleural sac" EXACT []
synonym: "wall of pleural sac" EXACT []
xref: BTO:0001791
xref: EFO:0001980
xref: FBbt:00004591
xref: FMA:9583
xref: GAID:360
xref: HOG:0000394
xref: MA:0000433
xref: ncithesaurus:Pleural_Tissue
xref: OpenCyc:Mx4rv3zwLZwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0002402 ! pleural cavity
[Term]
id: UBERON:0000978
name: leg
alt_id: UBERON:FBbt_00004640-FMA_24979-MA_0000047-MIAA_0000095
def: "A leg is a limb on which an animal walks and stands (GO:0035110)." [GO:0035110, Wikipedia:Leg]
comment: Functional grouping, currently encompasses vertebrate and insect legs
subset: uberon_slim
synonym: "Intermediate segment of free lower limb" NARROW []
synonym: "Leg" EXACT []
xref: BTO:0000721
xref: EFO:0001411
xref: EHDAA:5151
xref: EHDAA:6176
xref: EHDAA:8289
xref: FBbt:00004640
xref: FMA:24979
xref: GAID:49
xref: galen:Leg
xref: HAO:0000494
xref: HOG:0000345
xref: MA:0000047
xref: MAT:0000095
xref: MIAA:0000095
xref: ncithesaurus:Leg
xref: OpenCyc:Mx4rvViYzZwpEbGdrcN5Y29ycA
is_a: UBERON:0002101 ! limb
[Term]
id: UBERON:0000979
name: tibia
alt_id: UBERON:FBbt_00004642-FMA_24476-MA_0001361
def: "Larger and stronger of the two bones in the leg below the knee in vertebrates and connects the knee with the ankle bones." [Wikipedia:Tibia]
comment: Does not include the tibia segment of the arthropod leg FBbt:00004642
subset: uberon_slim
synonym: "shankbone" EXACT [Wikipedia:Tibia]
synonym: "shinbone" EXACT [Wikipedia:Tibia]
synonym: "Tibia" EXACT []
xref: AAO:0000890
xref: BTO:0001252
xref: FMA:24476
xref: GAID:204
xref: MA:0001361
xref: ncithesaurus:Tibia
is_a: UBERON:0002495 ! long bone
is_a: UBERON:0003608 ! implied link automatically realized ! hindlimb long bone
relationship: part_of UBERON:0001441 ! skeleton of lower limb
[Term]
id: UBERON:0000980
name: trochanter
alt_id: UBERON:FBbt_00004643-FMA_82513
def: "part of the thigh bone." [Wikipedia:Trochanter]
comment: Excludes FBbt:00004643 HAO:0001034
subset: uberon_slim
synonym: "Trochanter" EXACT []
xref: FMA:82513
xref: MA:0002821
xref: ncithesaurus:Trochanter
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0000981
name: femur
alt_id: UBERON:FBbt_00004644-FMA_9611-MA_0001359
def: "The femur, or thigh bone, is the most proximal (closest to the body) bone of the leg in vertebrates capable of walking or jumping, such as most land mammals, birds, many reptiles such as lizards, and amphibians such as frogs. In vertebrates with four legs, the femur is found only in the rear legs. Some species of whales[1], snakes[2], and other non-walking vertebrates have vestigial femurs. One of the earliest known vertebrates to have a femur is the Eusthenopteron, a prehistoric lobe-finned fish from the Late Devonian period." [Wikipedia:Femur]
comment: exlcudes FBbt:00004644. In invertebrates, the name femur is also given to the most proximal full-length jointed segment of the legs of some arthropods such as spiders. excludes HAO:0000327
subset: uberon_slim
synonym: "Femur" EXACT []
synonym: "Thigh bone" EXACT []
synonym: "thigh bone" EXACT []
xref: AAO:0000889
xref: BTO:0001284
xref: EFO:0001396
xref: FMA:9611
xref: GAID:199
xref: galen:Femur
xref: HOG:0001159
xref: MA:0001359
xref: ncithesaurus:Femur
xref: OpenCyc:Mx4rvVjOJJwpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0001441 ! skeleton of lower limb
relationship: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0000982
name: joint
alt_id: UBERON:FBbt_00004645-FMA_228659-FMA_7490-MA_0000319-MIAA_0000188-XAO_0000171-ZFA_0001596
def: "Heterogeneous cluster which consists of two or more adjacent bones or cartilages, parts of which are interconnected by organ parts that consist of various types of connective tissue. Together with other joints and bones, a joint constitutes the skeletal system. Examples: pubic symphysis, knee joint, temporomandibular joint. // The point of contact between elements of the skeleton. // Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue." [NLM:joint, Wikipedia:Joint, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Joint" EXACT []
synonym: "Set of all joints" EXACT []
synonym: "set of all joints" BROAD []
xref: BTO:0001686
xref: EFO:0000948
xref: FBbt:00004645
xref: FMA:7490
xref: GAID:102
xref: galen:Joint
xref: HOG:0001276
xref: MA:0000319
xref: MAT:0000188
xref: MIAA:0000188
xref: ncithesaurus:Joint
xref: OpenCyc:Mx4rvVjjdpwpEbGdrcN5Y29ycA
xref: TAO:0000367
xref: XAO:0000171
xref: ZFA:0001596
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0000983
name: metatarsus
alt_id: UBERON:FBbt_00004648-FMA_24997-MA_0000049
def: "Limb segment that consists of the long bones of the foot. The metatarsals are analogous to the metacarpal bones of the hand." [Wikipedia:Metatarsus]
comment: excludes FBbt:00004648
subset: uberon_slim
synonym: "Metatarsal part of foot" EXACT []
synonym: "metatarsal part of foot" EXACT []
synonym: "Metatarsal region" EXACT []
synonym: "metatarsal region" EXACT []
synonym: "Metatarsus" EXACT []
xref: FMA:24997
xref: GAID:43
xref: MA:0000049
xref: OpenCyc:Mx4rva_rBJwpEbGdrcN5Y29ycA
xref: XAO:0003212
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0000984
name: thoracic wing
alt_id: UBERON:FBbt_00004729-MIAA_0000202
def: "A flight organ of the adult external thorax that is derived from a dorsal mesothoracic disc." [FB:gg]
comment: TODO: review. hymenoptera thorax = fusion of thorax and mesosoma/metasoma
subset: uberon_slim
synonym: "adult mesothoracic wing" RELATED []
synonym: "adult metathoracic wing" RELATED []
xref: FBbt:00004729
xref: HAO:0001089
is_a: UBERON:0000023 ! wing
intersection_of: UBERON:0000023 ! wing
intersection_of: part_of UBERON:0000915 ! thorax
relationship: develops_from UBERON:0000939 ! imaginal disc
relationship: part_of UBERON:0000914 ! segment
[Term]
id: UBERON:0000985
name: axillary vein
alt_id: UBERON:FBbt_00004754-FMA_13329-MA_0002084
def: "." [Wikipedia:Axillary_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Axillary vein" EXACT []
synonym: "subcostal vein" RELATED []
xref: FBbt:00004754
xref: FMA:13329
xref: GAID:527
xref: galen:AxillaryVein
xref: MA:0002084
xref: ncithesaurus:Axillary_Vein
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003506 ! implied link automatically realized ! chest blood vessel
is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel
relationship: part_of UBERON:0000481 ! multi-tissue structure
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0000987
name: haltere
alt_id: UBERON:FBbt_00004783-MIAA_0000203
def: "The capitate stalk on both sides of the thorax having developed from the dorsal metathoracic wing-buds, it is freely movable and capable of vibration, representing the hind wing of Diptera; used for flight balance." [FB:gg, ISBN:3110148986, Wikipedia:Haltere]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "balancer organ" RELATED []
xref: EFO:0000886
xref: FBbt:00004783
xref: MAT:0000203
xref: MIAA:0000203
is_a: UBERON:0000026 ! appendage
relationship: develops_from UBERON:0000939 ! imaginal disc
relationship: part_of UBERON:0000914 ! segment
[Term]
id: UBERON:0000988
name: pons
alt_id: UBERON:FBbt_00004840-FMA_67943-MA_0000204-MIAA_0000115-ZFA_0001618
def: "A bridge-like component of the male terminalia. // Organ component of neuraxis that has as its parts the pontine tegmentum and basal part of pons. Examples: There is only one pons." [FB:gg, Wikipedia:Pons]
comment: TODO: check fly
subset: uberon_slim
synonym: "Pons" EXACT []
synonym: "Pons of Varolius" EXACT []
synonym: "pons of varolius" EXACT []
xref: BTO:0001101
xref: EFO:0001394
xref: FBbt:00004840
xref: FMA:67943
xref: GAID:578
xref: HOG:0001176
xref: MA:0000204
xref: MAT:0000115
xref: MIAA:0000115
xref: NIF_GrossAnatomy:birnlex_733
xref: ZFA:0001618
is_a: UBERON:0002680 ! regional part of metencephalon
relationship: part_of UBERON:0001895 ! metencephalon
relationship: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0000989
name: penis
alt_id: UBERON:FBbt_00004852-FMA_9707-MA_0000408-MIAA_0000186
def: "." [Wikipedia:Penis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Penis" EXACT []
synonym: "phallus" RELATED []
xref: BTO:0000405
xref: EFO:0000987
xref: FBbt:00004852
xref: FMA:9707
xref: GAID:389
xref: HOG:0000727
xref: MA:0000408
xref: MAT:0000186
xref: MIAA:0000186
xref: ncithesaurus:Penis
xref: OpenCyc:Mx4rvVjkCZwpEbGdrcN5Y29ycA
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0000079 ! male reproductive system
[Term]
id: UBERON:0000990
name: reproductive system
alt_id: UBERON:FBbt_00004857-FMA_7160-MA_0000326-MIAA_0000305-WBbt_0005747-XAO_0000142-ZFA_0000632
def: "Anatomical system that has as its parts the organs concerned with reproduction." [NLM:genitourinary+tract, Wikipedia:Reproductive_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Genital system" RELATED []
synonym: "genital system" RELATED []
synonym: "genitalia" NARROW []
synonym: "Reproductive system" EXACT []
xref: BILA:0000103
xref: BTO:0000081
xref: EFO:0000809
xref: EHDAA:5923
xref: FBbt:00004826
xref: FBbt:00004857
xref: FMA:7160
xref: HAO:0000374
xref: HAO:0000895
xref: HOG:0000182
xref: MA:0000326
xref: MIAA:0000305
xref: ncithesaurus:Reproductive_System
xref: OpenCyc:Mx4rvVja4ZwpEbGdrcN5Y29ycA
xref: TAO:0000632
xref: WBbt:0005747
xref: XAO:0000142
xref: ZFA:0000632
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0000991
name: gonad
alt_id: UBERON:FBbt_00004858-FMA_18250-MA_0002420-WBbt_0005175-XAO_0003146-ZFA_0000413
def: "organ that makes gametes [Wikipedia]. The organs of the reproductive system in which the germ cells reside. // General anatomical term which refers to ovary or testis. // organ producing either sperm or ova. // Reproductive organ that produces and releases eggs (ovary) or sperm (testis). // The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis)." [FB:gg, ISBN:0140512888, Wikipedia:Gonad, ZFA:0000413, ZFIN:curator]
comment: FMA xref is a 'general anatomical term'
subset: uberon_slim
synonym: "Gonad" EXACT []
synonym: "Gonada" EXACT []
synonym: "gonada" EXACT []
xref: AAO:0000213
xref: BILA:0000123
xref: BTO:0000534
xref: FBbt:00004858
xref: FMA:18250
xref: GAID:368
xref: HAO:0000379
xref: HOG:0000397
xref: MA:0002420
xref: ncithesaurus:Gonad
xref: TAO:0000413
xref: WBbt:0005175
xref: XAO:0003146
xref: ZFA:0000413
is_a: UBERON:0000489 ! cavitated compound organ
relationship: part_of UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0002323 ! body cavity
[Term]
id: UBERON:0000992
name: ovary
alt_id: UBERON:FBbt_00004865-FMA_7209-MA_0000384-MIAA_0000125-XAO_0000258-ZFA_0000403
def: "Reproductive organ that produces and releases eggs. // Female reproductive organ." [Wikipedia:Ovary, XB:curator, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ovaries" RELATED []
synonym: "Ovary" EXACT []
xref: AAO:0000371
xref: BILA:0000125
xref: BTO:0000975
xref: EHDAA:8124
xref: FBbt:00004865
xref: FMA:7209
xref: GAID:367
xref: HOG:0000251
xref: MA:0000384
xref: MIAA:0000125
xref: ncithesaurus:Ovary
xref: OpenCyc:Mx4rvVi9QJwpEbGdrcN5Y29ycA
xref: TAO:0000403
xref: XAO:0000258
xref: ZFA:0000403
is_a: UBERON:0000991 ! gonad
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0000993
name: oviduct
alt_id: UBERON:FBbt_00004911-FMA_18245-MA_0000385-MIAA_0000126-XAO_0003052-ZFA_0000560
def: "passage from the ovaries to the outside of the body[Wikipedia:Oviduct]." [Wikipedia:Oviduct]
subset: uberon_slim
synonym: "uterine tube" EXACT []
xref: BTO:0000980
xref: EFO:0000974
xref: FBbt:00004911
xref: GAID:366
xref: HOG:0001136
xref: MAT:0000126
xref: MIAA:0000126
xref: ncithesaurus:Fallopian_Tube
xref: TAO:0000560
xref: XAO:0003052
xref: ZFA:0000560
is_a: UBERON:0000058 ! duct
relationship: connects UBERON:0000992 ! ovary
[Term]
id: UBERON:0000994
name: spermathecum
alt_id: UBERON:FBbt_00004921-MIAA_0000168-WBbt_0005319
def: "an accordion-like tube that contains sperm and is the site of oocyte fertilization." [WA:dh]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "seminal receptacle" RELATED []
synonym: "spermatheca" RELATED []
xref: EFO:0000977
xref: FBbt:00004921
xref: MAT:0000168
xref: MIAA:0000168
xref: WBbt:0005319
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000991 ! gonad
relationship: part_of UBERON:0002537 ! hermaphrodite gonad
[Term]
id: UBERON:0000995
name: uterus
alt_id: UBERON:FBbt_00004924-FMA_17558-MA_0000389-MIAA_0000127-WBbt_0006760
def: "Organ with organ cavity which is continuous proximally with the right and left uterine tubes and distally is connected to the vagina. Examples: There is only one uterus. // The organ in which the eggs are developed and protected until laid." [ISBN:0198611862, WB:rynl, Wikipedia:Uterus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "uterine horn" RELATED []
synonym: "uterine horns" RELATED []
synonym: "Uterus" EXACT []
xref: BTO:0001424
xref: EFO:0000975
xref: FBbt:00004924
xref: FMA:17558
xref: GAID:172
xref: HOG:0001137
xref: MA:0000389
xref: MAT:0000127
xref: MIAA:0000127
xref: ncithesaurus:Uterus
xref: OpenCyc:Mx4rvViojJwpEbGdrcN5Y29ycA
xref: WBbt:0006760
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0000991 ! gonad
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0000996
name: vagina
alt_id: UBERON:FBbt_00004925-FMA_19949-MA_0000394-MIAA_0000128
def: "Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina. Examples: There is only one vagina." [Wikipedia:Vagina]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Vagina" EXACT []
xref: BTO:0000243
xref: EFO:0000976
xref: FBbt:00004925
xref: FMA:19949
xref: GAID:381
xref: HOG:0001138
xref: MA:0000394
xref: MAT:0000128
xref: MIAA:0000128
xref: ncithesaurus:Vagina
xref: OpenCyc:Mx4rvVj1B5wpEbGdrcN5Y29ycA
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0000474 ! female reproductive system
[Term]
id: UBERON:0000997
name: vulva
alt_id: UBERON:FBbt_00004926-FMA_20462-FMA_225311-MA_0000395-MIAA_0000169-WBbt_0006748
def: "female genitalia" [WB:rynl, Wikipedia:Vulva]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Female pudendum" EXACT []
synonym: "female pudendum" EXACT []
synonym: "Puboperineal region" EXACT []
synonym: "puboperineal region" EXACT []
synonym: "Skin of female pudendum" EXACT []
synonym: "skin of female pudendum" EXACT []
synonym: "Skin of vulva" EXACT []
synonym: "skin of vulva" EXACT []
synonym: "Vulva" EXACT []
xref: BTO:0001055
xref: EFO:0000978
xref: FBbt:00004926
xref: FMA:20462
xref: GAID:383
xref: HAO:0001087
xref: HOG:0001458
xref: MA:0000395
xref: MAT:0000169
xref: MIAA:0000169
xref: ncithesaurus:Vulva
xref: OpenCyc:Mx4rvgAWeJwpEbGdrcN5Y29ycA
xref: WBbt:0006748
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0000998
name: seminal vesicle
alt_id: UBERON:FBbt_00004958-FMA_19386-MA_0000410-MIAA_0000171-WBbt_0006870
def: "part of male gonad that holds mature sperm, made of a total of 12 nuclei." [WB:Paper00000193, WB:rynl, Wikipedia:Seminal_vesicle]
comment: The mesonephros persists and form the permanent kidneys in fishes and amphibians, but in reptiles, birds, and mammals, it atrophies and for the most part disappears rapidly as the permanent kidney (metanephros) begins to develop during the sixth or seventh week. By the beginning of the fifth month only the ducts and a few of the tubules of the mesonephros remain.
subset: uberon_slim
synonym: "gon_male_sves" RELATED []
synonym: "Seminal gland" EXACT []
synonym: "seminal gland" EXACT []
synonym: "Seminal vesicle" EXACT []
synonym: "vas efferens" RELATED []
xref: BTO:0001234
xref: EFO:0000986
xref: FBbt:00004958
xref: FMA:19386
xref: GAID:394
xref: HOG:0001379
xref: MA:0000410
xref: MAT:0000171
xref: MIAA:0000171
xref: ncithesaurus:Seminal_Vesicle
xref: WBbt:0006870
is_a: UBERON:0002530 ! gland
relationship: develops_from UBERON:0000080 ! mesonephros
relationship: part_of UBERON:0002117 ! testicle
[Term]
id: UBERON:0000999
name: ejaculatory duct
alt_id: UBERON:FBbt_00004965-FMA_19325-MIAA_0000170
def: "." [Wikipedia:Ejaculatory_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ejaculatory duct" EXACT []
xref: BTO:0001580
xref: EFO:0000985
xref: FBbt:00004965
xref: FMA:19325
xref: GAID:388
xref: MAT:0000170
xref: MIAA:0000170
xref: ncithesaurus:Ejaculatory_Duct
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0000990 ! reproductive system
[Term]
id: UBERON:0001000
name: vas deferens
alt_id: UBERON:FBbt_00004968-FMA_19234-MA_0000413-MIAA_0000129-WBbt_0005337
def: "duct that transports sperm. In mammals this is from the epididymis." [Wikipedia:Vas_deferens]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Deferent duct" EXACT []
synonym: "deferent duct" RELATED []
synonym: "ductus deferens" RELATED [Wikipedia:Vas_deferens]
synonym: "sperm duct" RELATED []
synonym: "vas deferen" EXACT []
synonym: "Vas deferens" EXACT []
synonym: "vasa deferentia" RELATED []
xref: BTO:0001427
xref: EFO:0000981
xref: FBbt:00004968
xref: FMA:19234
xref: GAID:404
xref: HAO:0001052
xref: MA:0000413
xref: MIAA:0000129
xref: ncithesaurus:Vas_Deferens
xref: WBbt:0005337
is_a: UBERON:0000058 ! duct
[Term]
id: UBERON:0001001
name: chitin-based cuticle
alt_id: UBERON:FBbt_00004970
def: "The outer non-living layer of the integumentary system derived from the epidermis. The main structural component of arthropod cuticle is a polysaccharide, chitin, composed of N-acetylglucosamine units, together with proteins and lipids." [FB:gg, UBERON:cjm, Wikipedia:Exoskeleton]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "arthropod cuticle" RELATED []
synonym: "exoskeleton" EXACT []
synonym: "insect cuticle" RELATED []
xref: EFO:0000944
xref: FBbt:00004970
xref: MAT:0000150
xref: OpenCyc:Mx4rvVkBTJwpEbGdrcN5Y29ycA
is_a: UBERON:0001002 ! cuticle
[Term]
id: UBERON:0001002
name: cuticle
alt_id: UBERON:FBbt_00004970-MIAA_0000150-WBbt_0005755
def: "tough but flexible, non-mineral outer coverings of an organism, or parts of an organism, that provide protection. Cuticles are non-homologous, differing in their origin, structure and chemical composition. [Wikipedia]. The outer non-living layer of the integumentary system derived from the epidermis." [Wikipedia:Cuticle, Wikipedia:Eponychium]
comment: TODO - check cuticle vs eponychium
subset: uberon_slim
xref: BTO:0001600
xref: FBbt:00004970
xref: FMA:77859
xref: HAO:0000240
xref: MA:0002704
xref: MIAA:0000150
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: develops_from UBERON:0001003 ! epidermis
[Term]
id: UBERON:0001003
name: epidermis
alt_id: UBERON:FBbt_00004993-FBbt_00005401-FMA_70596-MA_0000153-MIAA_0000154-WBbt_0005733-XAO_0000028-ZFA_0000105
def: "Outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species[GO]. A cellular, multilayered epithelium derived from the ectoderm[ZFA]." [BTO:0000404, GO:0008544, Wikipedia:Epidermis, ZFIN:curator]
comment: Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. Epidermis, in invertebrates, the outermost layers of skin of up to 30 layers of stratified squamous epithelium.
subset: uberon_slim
synonym: "adult epidermis" EXACT []
synonym: "Epidermis" EXACT []
synonym: "hypoderm" RELATED []
synonym: "hypodermis" RELATED []
synonym: "skin" BROAD []
xref: AAO:0000143
xref: BTO:0000404
xref: EFO:0000954
xref: FBbt:00004993
xref: FBbt:00005401
xref: FMA:70596
xref: GAID:932
xref: HAO:0000298
xref: HOG:0000077
xref: MA:0000153
xref: MAT:0000154
xref: MIAA:0000154
xref: ncithesaurus:Epidermis
xref: TAO:0000105
xref: WBbt:0005733
xref: XAO:0000028
xref: ZFA:0000105
is_a: UBERON:0000483 ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: surrounds UBERON:0000468 ! multi-cellular organism
relationship: develops_from UBERON:0000924 ! ectoderm
relationship: part_of UBERON:0002199 ! integument
relationship: surrounds UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0001004
name: respiratory system
alt_id: UBERON:FBbt_00005024-FMA_7158-MA_0000327-MIAA_0000030-XAO_0000117-ZFA_0000272
def: "Functional system which consists of structures involved in respiration. // Anatomical system that has as its parts the organs involved in breathing in respiration (breathing)." [FB:FBrf0064787, OMD:respiratory+apparatus, Wikipedia:Respiratory_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Apparatus respiratorius" EXACT []
synonym: "apparatus respiratorius" EXACT []
synonym: "Respiratory system" EXACT []
synonym: "respiratory system" EXACT []
xref: AAO:0000541
xref: BTO:0000203
xref: EFO:0000804
xref: EHDAA:2203
xref: FMA:7158
xref: GAID:78
xref: HOG:0000202
xref: MA:0000327
xref: MAT:0000030
xref: MIAA:0000030
xref: ncithesaurus:Respiratory_System
xref: OpenCyc:Mx4rvVjzFJwpEbGdrcN5Y29ycA
xref: TAO:0000272
xref: XAO:0000117
xref: ZFA:0000272
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
[Term]
id: UBERON:0001005
name: trachea
alt_id: UBERON:FBbt_00005043-FMA_7394-MA_0000441-MIAA_0000137-XAO_0000118
def: "An airway through which respiratory air passes in organisms." [Wikipedia:Trachea]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Trachea" EXACT []
synonym: "Windpipe" EXACT []
synonym: "windpipe" EXACT []
xref: BTO:0001388
xref: EFO:0000935
xref: EHDAA:3078
xref: FBbt:00005043
xref: FMA:7394
xref: GAID:361
xref: HOG:0000371
xref: MA:0000441
xref: MAT:0000137
xref: MIAA:0000137
xref: ncithesaurus:Trachea
xref: OpenCyc:Mx4rvViOX5wpEbGdrcN5Y29ycA
xref: XAO:0000118
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001004 ! respiratory system
relationship: part_of UBERON:0001558 ! lower respiratory tract
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0001006
name: spiracle
alt_id: UBERON:FBbt_00005054-MIAA_0000208
def: "The mostly slit-like opening on the body surface through which air is taken into the respiratory system." [ISBN:3110148986, Wikipedia:Spiracle]
comment: This class was created automatically from a combination of ontologies. In elasmobranchs (sharks and rays), a spiracle is found behind each eye, and is often used to pump water through the gills while the animal is at rest (Fouts, 2003). A spiracle is also found in primitive bony fishes as the chirrups.
subset: uberon_slim
synonym: "spiracular gland" RELATED []
xref: EFO:0000936
xref: FBbt:00005054
xref: HAO:0000950
xref: MAT:0000208
xref: MIAA:0000208
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0001007
name: digestive system
alt_id: UBERON:FBbt_00005055-FMA_7152-MA_0000323-MIAA_0000018-WBbt_0005748-XAO_0000125-ZFA_0000339
def: "The organ system involved in the absorption of nutrients. // Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes." [FB:gg, NLM:alimentary+system, Wikipedia:Digestive_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Alimentary system" EXACT []
synonym: "alimentary system" RELATED []
synonym: "alimentary tract" RELATED []
synonym: "Digestive system" EXACT []
synonym: "gastrointestinal system" EXACT []
synonym: "gut" RELATED []
xref: AAO:0000129
xref: BILA:0000082
xref: EFO:0000793
xref: EHDAA:514
xref: FBbt:00005055
xref: FMA:7152
xref: GAID:278
xref: GAID:294
xref: galen:DigestiveSystem
xref: HOG:0000412
xref: MA:0000323
xref: MAT:0000018
xref: MIAA:0000018
xref: ncithesaurus:Gastrointestinal_System
xref: TAO:0000339
xref: WBbt:0005748
xref: XAO:0000125
xref: ZFA:0000339
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
[Term]
id: UBERON:0001008
name: urinary system
alt_id: UBERON:FBbt_00005056-FMA_7159-MIAA_0000027-WBbt_0005736-XAO_0000143-ZFA_0000163
def: "Anatomical system that has as its parts the organs concerned with the production and excretion of urine." [NLM:genitourinary+tract, Wikipedia:Excretory_system]
comment: In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page)
subset: uberon_slim
synonym: "excretory system" EXACT []
synonym: "renal system" EXACT []
synonym: "renal/urinary system" RELATED []
synonym: "Systema urinaria" EXACT []
synonym: "systema urinaria" EXACT []
synonym: "Urinary system" EXACT []
synonym: "urinary system" RELATED []
xref: BILA:0000015
xref: BTO:0003092
xref: EFO:0000803
xref: FBbt:00005056
xref: FMA:7159
xref: GAID:391
xref: HOG:0000723
xref: MAT:0000027
xref: MIAA:0000027
xref: ncithesaurus:Urinary_System
xref: TAO:0000163
xref: WBbt:0005736
xref: XAO:0000143
xref: ZFA:0000163
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
[Term]
id: UBERON:0001009
name: circulatory system
alt_id: UBERON:FBbt_00005057-FMA_7161-MA_0000010-MIAA_0000016-XAO_0000100-ZFA_0000010
def: "Organ system which consists of the heart, the systemic and pulmonary arterial and venous system, the lymphatic and the portal venous system. // Anatomical system that has as its parts the heart and blood vessels." [BTO:0000088, Wikipedia:Circulatory_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cardiovascular system" EXACT []
synonym: "cardiovascular system" EXACT []
xref: BILA:0000016
xref: BTO:0000088
xref: EFO:0000791
xref: EHDAA:394
xref: FBbt:00005057
xref: FMA:7161
xref: GAID:467
xref: HOG:0000302
xref: MA:0000010
xref: MAT:0000016
xref: MIAA:0000016
xref: ncithesaurus:Cardiovascular_System
xref: OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA
xref: TAO:0000010
xref: XAO:0000100
xref: ZFA:0000010
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
[Term]
id: UBERON:0001011
name: hemolymph
alt_id: UBERON:FBbt_00005061-MIAA_0000054
def: "Blood analogue used by all arthropods and most mollusks that have an open circulatory system. In these animals there is no distinction between blood and interstitial fluid. The liquid fills all of the interior (the hemocoel) of the body and surrounds all cells." [Wikipedia:Hemolymph]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "haemolymph" RELATED []
xref: BTO:0000572
xref: FBbt:00005061
xref: GAID:1220
xref: MAT:0000054
xref: MIAA:0000054
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0002193 ! hemolymphoid system
[Term]
id: UBERON:0001013
name: adipose tissue
alt_id: UBERON:FBbt_00005065-FMA_20110-MA_0000009-MIAA_0000015-XAO_0003049
def: "Dense irregular connective tissue, which predominantly consists of adipocytes. // Connective tissue in which fat is stored." [NLM:adipose+tissue, Wikipedia:Adipose_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fat tissue" EXACT []
synonym: "fatty tissue" EXACT []
xref: AAO:0000001
xref: BTO:0001487
xref: EFO:0000234
xref: EFO:0000790
xref: FBbt:00005065
xref: FMA:20110
xref: GAID:920
xref: galen:FattyTissue
xref: HOG:0001284
xref: MA:0000009
xref: MAT:0000015
xref: MIAA:0000015
xref: ncithesaurus:Adipose_Tissue
xref: OpenCyc:Mx4rvVjc_ZwpEbGdrcN5Y29ycA
xref: XAO:0003049
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0001014
name: fat body
alt_id: UBERON:FBbt_00005066-FMA_58616-MA_0002481-MIAA_0000096-XAO_0003050
synonym: "Fat pad" EXACT []
synonym: "fat pad" EXACT []
is_obsolete: true
[Term]
id: UBERON:0001015
name: muscle system
alt_id: UBERON:FBbt_00005069-FMA_30316-FMA_32558-MA_0000015-MIAA_0000025-WBbt_0005737-XAO_0000172-ZFA_0000548-ZFA_0005145
def: "Anatomical system that allows the animal move, includes all muscles." [BTO:0000887, WB:rynl, Wikipedia:Muscular_system, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Muscle group" EXACT []
synonym: "muscle group" EXACT []
synonym: "Muscles" EXACT []
synonym: "muscles" RELATED []
synonym: "Muscles set" EXACT []
synonym: "muscles set" EXACT []
synonym: "muscular system" EXACT []
synonym: "musculature" EXACT []
synonym: "musculature system" RELATED []
synonym: "Set of muscles" EXACT []
synonym: "set of muscles" EXACT []
xref: BTO:0000887
xref: EFO:0001949
xref: FBbt:00005069
xref: FMA:32558
xref: HOG:0001245
xref: MA:0002888
xref: MAT:0000025
xref: MIAA:0000025
xref: ncithesaurus:Muscle
xref: TAO:0000548
xref: WBbt:0005737
xref: ZFA:0000548
is_a: UBERON:0000467 ! anatomical system
relationship: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0001016
name: nervous system
alt_id: UBERON:FBbt_00005093-FMA_7157-MA_0000016-MIAA_0000026-WBbt_0005735-XAO_0000177-ZFA_0000396
def: "a network of specialized cells that communicate information about an organism's surroundings and itself[Wikipedia]." [ISBN:0-14-051288-8, ISBN:3110148986, NLM:nervous+system, WB:rynl, Wikipedia:Nervous_system, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nerve net" NARROW [Wikipedia:Nerve_net "Nerve nets consist of interconnected neurons lacking a brain or any form of cephalization."]
synonym: "Nervous system" EXACT []
xref: AAO:0000324
xref: BILA:0000079
xref: BTO:0001484
xref: EFO:0000802
xref: EHDAA:826
xref: FBbt:00005093
xref: FMA:7157
xref: GAID:466
xref: HOG:0000402
xref: MA:0000016
xref: MAT:0000026
xref: MIAA:0000026
xref: ncithesaurus:Nervous_System
xref: NIF_GrossAnatomy:birnlex_844
xref: OpenCyc:Mx4rvViT_pwpEbGdrcN5Y29ycA
xref: TAO:0000396
xref: WBbt:0005735
xref: XAO:0000177
xref: ZFA:0000396
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
relationship: develops_from UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0001017
name: central nervous system
alt_id: UBERON:FBbt_00005094-FMA_55675-MA_0000167-XAO_0000215-ZFA_0000012
def: "The part of the nervous system which consists of the brain and spinal cord, to which sensory impulses are transmitted and from which motor impulses pass out, and which supervises and coordinates the activity of the entire nervous system[XAO]. Organ with organ cavity which consists of gray matter and white matter[FMA]. The brain and spinal cord[ZFA]." [FB:gg, ISBN:3110148986, NLM:central+nervous+system, Wikipedia:Central_nervous_system, ZFIN:curator]
subset: uberon_slim
synonym: "Central nervous system" EXACT []
synonym: "CNS" RELATED []
synonym: "cns" RELATED []
synonym: "Neuraxis" EXACT []
synonym: "neuraxis" EXACT []
xref: AAO:0000090
xref: BILA:0000080
xref: BTO:0000227
xref: EFO:0000908
xref: EHDAA:828
xref: FBbt:00005094
xref: FMA:55675
xref: GAID:570
xref: HOG:0000293
xref: MA:0000167
xref: MAT:0000457
xref: ncithesaurus:Central_Nervous_System
xref: NIF_GrossAnatomy:birnlex_1099
xref: TAO:0000012
xref: XAO:0000215
xref: ZFA:0000012
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001018
name: axon tract
alt_id: UBERON:FBbt_00005100-FMA_76739
def: "A group of axons linking two or more neuropils and having a common origin, termination." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html]
comment: This class was created automatically from a combination of ontologies
synonym: "Tract" EXACT []
synonym: "tract" EXACT []
xref: FBbt:00005100
xref: FMA:76739
is_a: UBERON:0000122 ! nerve fiber bundle
[Term]
id: UBERON:0001019
name: fascicle
alt_id: UBERON:FBbt_00005101-FMA_76740
def: "A slender bundle of axons linking one neuropil to another." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Fascicle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Fascicle" EXACT []
synonym: "Fasciculus" EXACT []
synonym: "fasciculus" EXACT []
synonym: "nerve fasciculus" EXACT [FMA:12235]
xref: FBbt:00005101
xref: FMA:12235
xref: ncithesaurus:Fascicle
xref: NIF_GrossAnatomy:birnlex_872
is_a: UBERON:0000122 ! nerve fiber bundle
[Term]
id: UBERON:0001020
name: commissure
alt_id: UBERON:FBbt_00005103-FMA_76741
def: "The transverse connection between two longitudinal parts, e.g. nerves, tracheae. In the context of Drosophila refers to a broad band of axons connecting the same neuropils each side of the brain." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, ISBN:3110148986, Wikipedia:Commissure]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Commissure" EXACT []
xref: FBbt:00005103
xref: FMA:83906
xref: ncithesaurus:Commissure
xref: OpenCyc:Mx4rdBrmE6gOEdudWQACs5b6Bw
is_a: UBERON:0001018 ! axon tract
[Term]
id: UBERON:0001021
name: nerve
alt_id: UBERON:FBbt_00005099-FMA_5914
alt_id: UBERON:FBbt_00005105-FMA_65132-MA_0000217-XAO_0003047-ZFA_0007009
def: "an enclosed, cable-like bundle of peripheral axons [wikipedia]. A portion of tissue which is a fasiculated group of axons[ZFA]." [Wikipedia:Nerve, ZFA:0007009, ZFIN:curator]
comment: TODO - nerve fiber. TODO - nerve in FMA, neural tree organ vs nerve. See also UBERON:0003714 portion of nerve tissue - ZFA refers to this?
subset: uberon_slim
synonym: "Nerve" EXACT []
synonym: "nerve fiber" RELATED []
synonym: "neural subtree" RELATED []
synonym: "neurofibrum" RELATED []
xref: BTO:0000925
xref: EHDAA:2851
xref: EHDAA:3776
xref: EHDAA:4657
xref: FBbt:00005105
xref: FMA:61284
xref: FMA:65132
xref: GAID:758
xref: MA:0000217
xref: ncithesaurus:Nerve
xref: TAO:0007009
xref: XAO:0003047
xref: ZFA:0007009
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001022
name: cell body
alt_id: UBERON:FBbt_00005107-FMA_67301
def: "The cell body of a neuron. // Cell component which consists of the plasma membrane and the cytoplasm surrounding the nucleus." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Cell_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cell body" EXACT []
synonym: "Cell soma" EXACT []
synonym: "cell soma" EXACT []
synonym: "soma" RELATED []
xref: FBbt:00005107
xref: FMA:67301
xref: GO:0043025
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0001023
name: dendrite
alt_id: UBERON:FBbt_00005110-FMA_67314
def: "The region of a neuron receiving inputs from other neurons, typically a slender neurite, often branched. In insect neurons, this is often not a clear designation and often presynaptic sites co-extend with postsynaptic ones. // Cell appendage of a neuron that consists of the dendrite proper and the dendritic spines." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Dendrite]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Dendrite" EXACT []
xref: FBbt:00005110
xref: FMA:67314
xref: GAID:749
xref: GO:0030425
xref: ncithesaurus:Dendrite
is_a: UBERON:0001024 ! neurite
[Term]
id: UBERON:0001024
name: neurite
alt_id: UBERON:FBbt_00005113-FMA_61814
def: "One of the processes or extensions of a neuron, axon or dendrite or cell body fiber. // Cell appendage of the neuron which includes the axon and the dendrite." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Neurite]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Neurite" EXACT []
xref: FBbt:00005113
xref: FMA:61814
xref: GAID:751
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0001025
name: synapse
alt_id: UBERON:FBbt_00005114-FMA_67408
def: "The structural contact that is the site of transmission between neurons, identified by a presynaptic ribbon and synaptic vesicles as the input element and one or (usually) more postsynaptic elements with various specializations (membrane densities, cisternae, etc.)." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Synapse]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Synapse" EXACT []
synonym: "Synaptic junction" EXACT []
synonym: "synaptic junction" EXACT []
xref: FBbt:00005114
xref: FMA:67408
xref: GAID:766
xref: GO:0045202
xref: ncithesaurus:Synapse
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0001026
name: motor nerve
alt_id: UBERON:FBbt_00005135-FMA_5867
def: "General anatomical term applied to nerves in which somatic efferent nerve fibers predominate[FMA]. A motor nerve is an efferent nerve that exclusively contains the axons of somatic and branchial motoneurons, which innervate skeletal muscles (that ensure locomotion) and branchial muscles (that motorize the face and neck)[WP]." [Wikipedia:Motor_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "efferent nerve" RELATED []
synonym: "Motor nerve" EXACT []
synonym: "Nervus motorius" EXACT []
synonym: "nervus motorius" EXACT []
xref: FBbt:00005135
xref: FMA:5867
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0003266 ! implied link automatically realized ! nerve of central nervous system
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0001027
name: sensory nerve
alt_id: UBERON:FBbt_00005136-FMA_5868
def: "General anatomical term applied to nerves in which somatic afferent nerve fibers predominate[FMA]. nerves that receive sensory stimuli made up of nerve fibers, called sensory fibers (mechanoreceptor fibers sense body movement and pressure placed against the body, and nociceptor fibers sense tissue injury)[WP]." [Wikipedia:Sensory_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "afferent nerve" RELATED []
synonym: "Nervus sensorius" EXACT []
synonym: "nervus sensorius" EXACT []
synonym: "Sensory nerve" EXACT []
xref: FBbt:00005136
xref: FMA:5868
xref: OpenCyc:Mx4rv0GdXpwpEbGdrcN5Y29ycA
is_a: UBERON:0001021 ! nerve
[Term]
id: UBERON:0001029
name: neuromuscular junction
alt_id: UBERON:FBbt_00005142-FMA_61803
def: "." [Wikipedia:Neuromuscular_junction]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Myoneural junction" EXACT []
synonym: "myoneural junction" EXACT []
synonym: "Neuromuscular junction" EXACT []
xref: FBbt:00005142
xref: FMA:61803
xref: GAID:809
xref: GO:0031594
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001030
name: synaptic ribbon
alt_id: UBERON:FBbt_00005143-FMA_67107
comment: This class was created automatically from a combination of ontologies
synonym: "Ribbon synapse" EXACT []
synonym: "ribbon synapse" EXACT []
synonym: "Synaptic ribbon" EXACT []
xref: FBbt:00005143
xref: FMA:67107
is_a: UBERON:0001025 ! synapse
relationship: part_of UBERON:0001029 ! neuromuscular junction
[Term]
id: UBERON:0001031
name: neurilemma
alt_id: UBERON:FBbt_00005151-FMA_62976
def: "Neural tissue which consists of Schwann cells." [Wikipedia:Neurilemma]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Neurilemma" EXACT []
synonym: "Neurolemma" EXACT []
synonym: "neurolemma" EXACT []
synonym: "Sheath of Schwann" EXACT []
synonym: "sheath of schwann" EXACT []
xref: BTO:0003048
xref: FBbt:00005151
xref: FMA:62976
xref: GAID:730
xref: ncithesaurus:Sheath_of_Schwann
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001032
name: sense organ system
alt_id: UBERON:FBbt_00005155-FMA_78499-MA_0002442-MIAA_0000031-WBbt_0005832-ZFA_0000282
def: "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information." [Wikipedia:Sensory_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sense organ system" EXACT []
synonym: "Sensory organ system" EXACT []
synonym: "sensory organ system" EXACT []
synonym: "sensory system" EXACT []
xref: AAO:0000555
xref: BILA:0000099
xref: EFO:0000805
xref: FMA:78499
xref: MA:0002442
xref: MAT:0000031
xref: MIAA:0000031
xref: TAO:0000282
xref: ZFA:0000282
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
relationship: overlaps UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001033
name: gustatory system
alt_id: UBERON:FBbt_00005159-FMA_7194-MA_0002446-MIAA_0000275-ZFA_0001101
def: "A sensory system for the sensing of taste." [Wikipedia:Gustatory_system]
subset: uberon_slim
synonym: "gustatory organ system" EXACT []
synonym: "taste system" EXACT []
xref: BILA:0000143
xref: EFO:0000830
xref: FMA:7194
xref: MA:0002446
xref: MAT:0000275
xref: MIAA:0000275
xref: TAO:0001101
xref: ZFA:0001101
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
[Term]
id: UBERON:0001034
name: photoreceptor
alt_id: UBERON:FBbt_00005162-FMA_85613
def: "Can refer to a light sensitive organ, a photoreceptor cell or a photoreceptor protein. This class was made obsolete because it was ambiguous" [Wikipedia:Photoreceptor]
xref: BTO:0001060
xref: FBbt:00005162
xref: FMA:85613
xref: GAID:778
is_obsolete: true
consider: CL:0000210
[Term]
id: UBERON:0001035
name: socket
alt_id: UBERON:FBbt_00005172-FMA_7495-MA_0001499
def: "Fibrous joint in which the periodontal ligament connects a tooth to the alveolar bone of the maxilla or mandible. Examples: Dento-alveolar joint of incisor tooth." []
comment: This class was created automatically from a combination of ontologies
synonym: "Dento-alveolar joint" EXACT []
synonym: "dento-alveolar joint" EXACT []
synonym: "Dento-alveolar syndesmosis" EXACT []
synonym: "dento-alveolar syndesmosis" EXACT []
synonym: "gomphosis" EXACT []
synonym: "Peg-and-socket joint" EXACT []
synonym: "peg-and-socket joint" EXACT []
synonym: "Socket" EXACT []
xref: FMA:7495
xref: MA:0001499
is_a: UBERON:0002209 ! fibrous joint
is_a: UBERON:0002213 ! cartilaginous joint
[Term]
id: UBERON:0001037
name: hair
alt_id: UBERON:FBbt_00005182-FMA_53667-MA_0000155-MIAA_0000160
def: "." [Wikipedia:Hair]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "coat hair" EXACT []
synonym: "Hair" EXACT []
synonym: "microchaeta" RELATED []
synonym: "setulae" RELATED []
synonym: "vibrissa" RELATED []
xref: BTO:0001501
xref: EFO:0000958
xref: FMA:53667
xref: GAID:71
xref: HOG:0001191
xref: MA:0000155
xref: MAT:0000160
xref: MIAA:0000160
xref: ncithesaurus:Hair
xref: OpenCyc:Mx4rvVjOX5wpEbGdrcN5Y29ycA-Mp88EdaAAACgycbRww
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002199 ! integument
[Term]
id: UBERON:0001038
name: chordotonal organ
alt_id: UBERON:FBbt_00005215-MIAA_0000209
def: "Chordotonal organs are arthropod sensory structures consisting of special sensilla called the scolopidia, which are mechano-transducers and respond mainly to stretch or flexion. In insects, they consist of bundles of internal sensilla, each of which has a cap cell, an enveloping cell and one or more sense cells. The distal end of the organ is usually attached to the cuticle of the body wall, marked by a pit, a thickened disc or a nodule of chitin, and the base of the organ is connected with the hypodermis, often by a special ligament. // An auditory and vibration detector in insects" [FB:FBrf0056378, Wikipedia:Chordotonal_organ]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ch" RELATED []
synonym: "scolopophorous organ" RELATED []
xref: EFO:0000940
xref: FBbt:00005215
xref: MAT:0000209
xref: MIAA:0000209
is_a: UBERON:0000020 ! sense organ
[Term]
id: UBERON:0001040
name: yolk sac
alt_id: UBERON:FBbt_00005376-FMA_87180
def: "Membranous sac attached to an embryo, providing early nourishment in the form of yolk in bony fishes, sharks, reptiles, birds, and primitive mammals. It functions as the developmental circulatory system of the human embryo, before internal circulation begins. In the mouse, the yolk sac is the first site of blood formation, generating primitive macrophages and erythrocytes." [Wikipedia:Yolk_sac]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Yolk sac" EXACT []
xref: BTO:0001471
xref: EHDAA:164
xref: FMA:87180
xref: GAID:1301
xref: HOG:0000830
xref: ncithesaurus:Yolk_Sac
is_a: UBERON:0000478 ! extraembryonic structure
[Term]
id: UBERON:0001041
name: foregut
alt_id: UBERON:FBbt_00005379-FMA_45616-MA_0001526-XAO_0000232
def: "An anterior part of the alimentary canal derived from the ectoderm." [FB:gg, Wikipedia:Foregut]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Foregut" EXACT []
xref: BILA:0000085
xref: BTO:0000507
xref: EHDAA:520
xref: FBbt:00005379
xref: FMA:45616
xref: HOG:0000285
xref: MA:0001526
xref: ncithesaurus:Foregut
xref: XAO:0000232
is_a: UBERON:0000481 ! multi-tissue structure
relationship: part_of UBERON:0001555 ! gut
[Term]
id: UBERON:0001042
name: pharynx
alt_id: UBERON:FBbt_00005380-FMA_46688-MA_0000432-MIAA_0000049-WBbt_0003681-ZFA_0000056
def: "the feeding organ, a neuro-muscular pump in the head of the animal, used to ingest food, bacteria suspended in liquid, filter them out, grind them up and transport posteriorly into the instestine. // ZFA: Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills. Kimmel et al, 1995." [WB:rynl, Wikipedia:Pharynx, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "esophagus" RELATED []
synonym: "Pharynx" EXACT []
xref: BTO:0001049
xref: EFO:0000836
xref: EHDAA:2947
xref: FBbt:00005380
xref: FMA:46688
xref: GAID:155
xref: HOG:0000462
xref: MA:0000432
xref: MAT:0000049
xref: MIAA:0000049
xref: ncithesaurus:Pharynx
xref: OpenCyc:Mx4rvViv7ZwpEbGdrcN5Y29ycA
xref: TAO:0000056
xref: WBbt:0003681
xref: ZFA:0000056
is_a: UBERON:0000477 ! anatomical cluster
relationship: continuous_with UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0001043
name: esophagus
alt_id: UBERON:FBbt_00005381-FMA_7131-MA_0000352-MIAA_0000048-XAO_0000127-ZFA_0000204
def: "Organ with organ cavity which is continuous proximally with the pharynx and distally with the stomach. Examples: There is only one esophagus. // Tube that connects the pharynx to the stomach. At NF stage 57 it is a straight tube, round in cross section, and starting from the pharynx runs backward along the dorsal side of the abdominal cavity. Its lining consists of a columnar glandular epithelium with mucus secreting cells. It is thrown into longitudinal folds." [ISBN:0815318960, OMD:esophagus, Wikipedia:Esophagus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Esophagus" EXACT []
synonym: "Gullet" EXACT []
synonym: "gullet" EXACT []
synonym: "oesophagus" EXACT []
xref: AAO:0000145
xref: BTO:0000959
xref: EFO:0000835
xref: EHDAA:2937
xref: FBbt:00005381
xref: FMA:7131
xref: GAID:291
xref: galen:Esophagus
xref: HOG:0000450
xref: MA:0000352
xref: MAT:0000048
xref: MIAA:0000048
xref: ncithesaurus:Esophagus
xref: OpenCyc:Mx4rvVj9Q5wpEbGdrcN5Y29ycA
xref: TAO:0000204
xref: XAO:0000127
xref: ZFA:0000204
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001041 ! foregut
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0001044
name: salivary gland
alt_id: UBERON:FBbt_00005382-FMA_9597-MA_0000346-MIAA_0000079
def: "saliva-secreting exocrine glands of the oral cavity[GO]. Lobular organ the parenchyma of which consists of glandular acini which communicate the oral cavity. Examples: parotid gland, sublingual gland, lingual salivary gland[FMA]." [GO:0007431, Wikipedia:Salivary_gland]
subset: uberon_slim
synonym: "Salivary gland" EXACT []
xref: BTO:0001203
xref: EFO:0000859
xref: EHDAA:7987
xref: FBbt:00005382
xref: FMA:9597
xref: GAID:937
xref: HOG:0000376
xref: MA:0000346
xref: MAT:0000079
xref: MIAA:0000079
xref: ncithesaurus:Salivary_Gland
xref: OpenCyc:Mx4rvVjl5ZwpEbGdrcN5Y29ycA
is_a: UBERON:0002530 ! gland
is_a: UBERON:0003294 ! implied link automatically realized ! gland of foregut
intersection_of: UBERON:0002530 ! gland
intersection_of: secretes UBERON:0001836 ! saliva
relationship: part_of UBERON:0000167 ! oral cavity
relationship: part_of UBERON:0001041 ! foregut
[Term]
id: UBERON:0001045
name: midgut
alt_id: UBERON:FBbt_00005383-FMA_45617-MA_0001564-XAO_0000103
def: "In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon. That part of the alimentary canal which lies between the gizzard and the hind intestine. In the context of Drosophila refers to the part of the alimentary canal derived from the endoderm." [FB:gg, ISBN:3110148986, Wikipedia:Midgut]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Midgut" EXACT []
xref: BILA:0000086
xref: BTO:0000863
xref: EFO:0001950
xref: FBbt:00003138
xref: FMA:45617
xref: HOG:0000290
xref: MA:0001564
xref: ncithesaurus:Midgut
xref: XAO:0000103
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002075 ! viscus
relationship: part_of UBERON:0001555 ! gut
[Term]
id: UBERON:0001046
name: hindgut
alt_id: UBERON:FBbt_00005384-FMA_45618-MA_0001527-XAO_0000104
def: "A posterior part of the alimentary canal derived from the ectoderm." [FB:gg, Wikipedia:Hindgut]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hindgut" EXACT []
xref: BILA:0000087
xref: BTO:0000510
xref: FBbt:00005384
xref: FMA:45618
xref: HOG:0000459
xref: MA:0001527
xref: ncithesaurus:Hindgut
xref: XAO:0000104
is_a: UBERON:0000481 ! multi-tissue structure
relationship: part_of UBERON:0001555 ! gut
[Term]
id: UBERON:0001047
name: neural glomerulus
alt_id: UBERON:FBbt_00005386
def: "Roundish subunit structure of a neuropil, often ensheathed by glial lamellae. Also, unit structure of the antennal lobe." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Glomerulus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Glomerulus" EXACT []
xref: FBbt:00005386
xref: ncithesaurus:Glomerulus
is_a: UBERON:0001021 ! nerve
[Term]
id: UBERON:0001048
name: primordium
alt_id: UBERON:FBbt_00005495-FMA_86589-XAO_0003043
def: "Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue. // An embryonic structure that is the rudiment or commencement of a part or organ." [BTO:0001886, FB:DJS, FB:FBrf0089570, FB:FBrf0178740, Wikipedia:Primordium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "P" RELATED []
synonym: "placode" RELATED []
synonym: "Primordium" EXACT []
xref: BTO:0001886
xref: EFO:0001652
xref: FBbt:00005495
xref: FMA:86589
xref: MAT:0000482
xref: ncithesaurus:Primordium
xref: XAO:0003043
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0001049
name: neural tube
alt_id: UBERON:FBbt_00005554-MIAA_0000069-ZFA_0001135
def: "." [Wikipedia:Neural_tube]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "presumptive central nervous system" RELATED []
xref: BTO:0001057
xref: EHDAA:2869
xref: EHDAA:908
xref: HOG:0000307
xref: MAT:0000069
xref: MIAA:0000069
xref: ncithesaurus:Neural_Tube
xref: TAO:0001135
xref: ZFA:0001135
is_a: UBERON:0002346 ! neural ectoderm
relationship: develops_from UBERON:0000483 ! epithelium
relationship: develops_from UBERON:0002346 ! neural ectoderm
[Term]
id: UBERON:0001050
name: atrium
alt_id: UBERON:FBbt_00005615-FMA_85574-ZFA_0000471
def: "Anatomical chamber. Examples: right atrium of heart, atrium of middle nasal meatus, atrium of tympanic cavity, atrium of alveolus. // One of four heart chambers." []
subset: uberon_slim
synonym: "Atrium" EXACT [FMA:85574]
xref: BTO:0000903
xref: EFO:0000277
xref: EHDAA:1265
xref: FMA:85574
xref: galen:Atrium
xref: MAT:0000496
xref: OpenCyc:Mx4rDJ89oqgPEdudWQACs5b6Bw
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0001051
name: hypopharynx
alt_id: UBERON:FBbt_00005751-FMA_54880-MA_0001796
def: "Bottom part of the pharynx, and is the part of the throat that connects to the esophagus." [Wikipedia:Hypopharynx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hypopharynx" EXACT []
synonym: "Laryngeal pharynx" EXACT []
synonym: "laryngeal pharynx" EXACT []
synonym: "Laryngopharynx" EXACT []
synonym: "laryngopharynx" EXACT []
xref: BTO:0001740
xref: EFO:0001388
xref: FMA:54880
xref: GAID:338
xref: HOG:0000445
xref: MA:0001796
xref: ncithesaurus:Hypopharynx
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0001052
name: rectum
alt_id: UBERON:FBbt_00005756-FMA_14544-MA_0000336-MIAA_0000050-WBbt_0005773-XAO_0000238
def: "Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine. Examples: There is only one small intestine. // The passage from the posterior intestine, from the rectal valve to the opening to the exterior. // The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005." [WA:dh, Wikipedia:Rectum, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "rectal sac" RELATED []
xref: BTO:0001158
xref: EFO:0000848
xref: EHDAA:5836
xref: FBbt:00005756
xref: FMA:14544
xref: GAID:311
xref: HOG:0000427
xref: MA:0000336
xref: MAT:0000050
xref: MIAA:0000050
xref: ncithesaurus:Rectum
xref: OpenCyc:Mx4rvVjaU5wpEbGdrcN5Y29ycA
xref: WBbt:0005773
xref: XAO:0000238
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0001053
name: neurohemal organ
alt_id: UBERON:FBbt_00005757-MIAA_0000212
comment: This class was created automatically from a combination of ontologies
synonym: "neurohaemal organ" RELATED []
xref: BTO:0002106
xref: EFO:0000864
xref: FBbt:00005757
xref: MAT:0000212
xref: MIAA:0000212
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001054
name: malpighian tubule
alt_id: UBERON:FBbt_00005786-MIAA_0000123
def: "The most important structure of the insect's excretory organ, which may comprise cystiform or labyrinthine highly versatile tubules having their outlet into the inital section of the rectum." [ISBN:3110148986, Wikipedia:Malpighian_tubule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Malpighian tubule" EXACT []
synonym: "Malpighian tubules" EXACT []
synonym: "malpighian tubules" EXACT []
xref: BTO:0000810
xref: EFO:0000243
xref: FBbt:00005786
xref: GAID:1228
xref: MAT:0000123
xref: MIAA:0000123
is_a: UBERON:0000481 ! multi-tissue structure
relationship: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0001055
name: ureter
alt_id: UBERON:FBbt_00005793-FMA_19667-FMA_9704-MA_0000378-MA_0000379-MIAA_0000120-MIAA_0000121-WBbt_0004540-WBbt_0005777-XAO_0000144-XAO_0000153
is_obsolete: true
consider: UBERON:0000056
consider: UBERON:0000057
[Term]
id: UBERON:0001056
name: corpus cardiacum
alt_id: UBERON:FBbt_00005799-MIAA_0000211
comment: This class was created automatically from a combination of ontologies
xref: BTO:0000432
xref: EFO:0000380
xref: FBbt:00005799
xref: MAT:0000211
xref: MIAA:0000211
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0001057
name: corpus allatum
alt_id: UBERON:FBbt_00005800-MIAA_0000210
def: "A neurosecretory organ forming part of the retrocerebral complex." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0000291
xref: EFO:0000379
xref: FBbt:00005800
xref: MAT:0000210
xref: MIAA:0000210
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0001058
name: mushroom body
alt_id: UBERON:FBbt_00005801-MIAA_0000336
def: "Paired neuropils, thought to be crucial to olfactory associative learning and memory. Mushroom body neuropils are divided into calyces, pedunculus, and its subsequent lobes. In Drosophila these are the alpha, beta, and gamma lobes." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Mushroom_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0002675
xref: EFO:0000925
xref: FBbt:00005801
xref: GAID:1231
xref: MAT:0000336
xref: MIAA:0000336
is_a: UBERON:0000045 ! ganglion
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
is_a: UBERON:0003339 ! implied link automatically realized ! ganglion of central nervous system
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0001059
name: pars intercerebralis
alt_id: UBERON:FBbt_00005802-MIAA_0000337
def: "A medial cleft or depression dividing the left and right protocerebrum and containing numerous large and small somata of neurosecretory and neuromodulatory neurons." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EFO:0000926
xref: FBbt:00005802
xref: MAT:0000337
xref: MIAA:0000337
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0001062
name: anatomical entity
alt_id: UBERON:FBbt_root_00000000-FMA_62955
def: "Biological entity, which constitutes the structural organization of a biological organism, or is an attribute of that organization. Examples: cell, heart, head, peritoneal cavity, apex of lung, anatomical term, sagittal plane." [CARO:MAH]
comment: This class was created automatically from a combination of ontologies
xref: BILA:0000000
xref: FBbt_root:00000000
xref: FMA:62955
xref: HAO:0000000
xref: NIF_GrossAnatomy:birnlex_1002
xref: TAO:0100000
xref: ZFA:0100000
[Term]
id: UBERON:0001063
name: flocculus
alt_id: UBERON:Flocculus-MA_0000992
def: "." [Wikipedia:Flocculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: MA:0000992
xref: NIF_GrossAnatomy:birnlex_1329
xref: NULL:Flocculus
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex
relationship: part_of UBERON:0002245 ! hemisphere of cerebellum
[Term]
id: UBERON:0001064
name: pancreatic duct
alt_id: UBERON:FMA_10419-MA_0000124-ZFA_0001372
def: "." [Wikipedia:Pancreatic_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pancreatic duct" EXACT []
xref: BTO:0002362
xref: EHDAA:9194
xref: FMA:10419
xref: GAID:337
xref: HOG:0000254
xref: MA:0000124
xref: ncithesaurus:Pancreatic_Duct
xref: TAO:0001372
xref: ZFA:0001372
is_a: UBERON:0000058 ! duct
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0001264 ! pancreas
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0001065
name: parotid duct
alt_id: UBERON:FMA_10420-MA_0002697
def: "." [Wikipedia:Parotid_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Duct of parotid gland" EXACT []
synonym: "duct of parotid gland" EXACT []
synonym: "Parotid duct" EXACT []
synonym: "Stenon duct" EXACT []
synonym: "stenon duct" EXACT []
synonym: "Stensen's duct" EXACT []
synonym: "stensen's duct" EXACT []
synonym: "Stensens's duct" EXACT []
synonym: "stensens's duct" EXACT []
xref: FMA:10420
xref: MA:0002697
xref: ncithesaurus:Parotid_Duct
is_a: UBERON:0001837 ! duct of salivary gland
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0001831 ! parotid gland
relationship: part_of UBERON:0001831 ! parotid gland
[Term]
id: UBERON:0001066
name: intervertebral disk
alt_id: UBERON:FMA_10446-MA_0000110
def: "cartiliginous organ that lies between adjacent vertebrae in the spine. Each disc forms a cartilaginous joint to allow slight movement of the vertebrae, and acts as a ligament to hold the vertebrae together[WP]." [Wikipedia:Intervertebral_disk]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intervertebral disc" EXACT []
synonym: "spinal disc" EXACT [Wikipedia:Spinal_disc]
xref: BTO:0003625
xref: EFO:0001370
xref: FMA:10446
xref: GAID:105
xref: MA:0000110
xref: ncithesaurus:Intervertebral_Disc
xref: OpenCyc:Mx4rv11AcpwpEbGdrcN5Y29ycA
is_a: UBERON:0000062 ! organ
relationship: adjacent_to UBERON:0002412 {minCardinality="2"} ! vertebra
relationship: part_of UBERON:0001468 ! intervertebral symphysis
[Term]
id: UBERON:0001067
name: vertebral arch joint
alt_id: UBERON:FMA_10447-MA_0001513
def: "a synovial joint between the superior articular process of one vertebra and the inferior articular process of the vertebra directly above it. There are two facet joints in each spinal motion segment[WP]." [Wikipedia:Facet_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Facet joint" EXACT []
synonym: "facet joint" EXACT []
synonym: "Joint of vertebral arch" EXACT []
synonym: "joint of vertebral arch" EXACT []
synonym: "Joint of vertebral articular process" EXACT []
synonym: "joint of vertebral articular process" EXACT []
synonym: "Vertebral arch joint" EXACT []
synonym: "Zygapophyseal joint" EXACT []
synonym: "zygapophyseal joint" EXACT []
synonym: "Zygapophysial joint" EXACT []
synonym: "zygapophysial joint" EXACT []
xref: FMA:10447
xref: GAID:275
xref: MA:0001513
xref: ncithesaurus:Facet_Joint
is_a: UBERON:0002217 ! synovial joint
relationship: adjacent_to UBERON:0002412 ! vertebra
relationship: part_of UBERON:0003861 ! neural arch
[Term]
id: UBERON:0001068
name: skin of back
alt_id: UBERON:FMA_10462-MA_0000498
comment: This class was created automatically from a combination of ontologies
synonym: "Back skin" EXACT []
synonym: "back skin" EXACT []
synonym: "Skin of back" EXACT []
xref: FMA:10462
xref: FMA:22985
xref: MA:0000498
is_a: UBERON:0001085 ! skin of trunk
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001137 ! back
relationship: part_of UBERON:0001137 ! back
[Term]
id: UBERON:0001069
name: head of pancreas
alt_id: UBERON:FMA_10468-MA_0000122
def: "." [Wikipedia:Head_of_pancreas]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Head of pancreas" EXACT []
synonym: "pancreas head" EXACT []
synonym: "Pancreatic head" EXACT []
synonym: "pancreatic head" EXACT []
synonym: "Right extremity of pancreas" EXACT []
synonym: "right extremity of pancreas" EXACT []
xref: FMA:10468
xref: HOG:0000448
xref: MA:0000122
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0001070
name: external carotid artery
alt_id: UBERON:FMA_10635-MA_0001929-XAO_0000345-ZFA_0005022
def: "The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch. Isogai et al. 2001." [Wikipedia:External_carotid_artery, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "External carotid artery" EXACT []
synonym: "opercular artery" EXACT []
synonym: "ORA" RELATED []
xref: EFO:0001953
xref: FMA:10635
xref: GAID:480
xref: HOG:0000265
xref: MA:0001929
xref: ncithesaurus:External_Carotid_Artery
xref: TAO:0005022
xref: XAO:0000345
xref: ZFA:0005022
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001071
name: superficial cervical artery
alt_id: UBERON:FMA_10665-MA_0002052
def: "." [Wikipedia:Superficial_cervical_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Superficial cervical artery" EXACT []
xref: FMA:10665
xref: MA:0002052
xref: ncithesaurus:Superficial_Cervical_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001072
name: inferior vena cava
alt_id: UBERON:FMA_10951-MA_0000480-XAO_0000388
def: "Trunk of systemic vein which is formed by the union of the right common iliac vein and the left common iliac vein and terminates in the right atrium." [Wikipedia:Inferior_vena_cava]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Inferior vena cava" EXACT []
synonym: "Posterior vena cava" EXACT []
synonym: "posterior vena cava" EXACT []
xref: BTO:0002682
xref: FMA:10951
xref: GAID:548
xref: galen:InferiorVenaCava
xref: HOG:0001194
xref: MA:0000480
xref: ncithesaurus:Inferior_Vena_Cava
xref: XAO:0000388
is_a: UBERON:0000063 ! organ segment
relationship: develops_from UBERON:0001143 ! hepatic vein
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0001073
name: ileocecal junction
alt_id: UBERON:FMA_11338-MA_0000332
comment: This class was created automatically from a combination of ontologies
synonym: "ileocaecal junction" EXACT []
synonym: "Ileocecal junction" EXACT []
xref: FMA:11338
xref: MA:0000332
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000160 ! intestine
[Term]
id: UBERON:0001074
name: pericardial cavity
alt_id: UBERON:FMA_11350-MA_0000053
def: "Cavity of serous sac surrounded by serous pericardium." [Wikipedia:Pericardial_cavity]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cavity of pericardial sac" EXACT []
synonym: "cavity of pericardial sac" EXACT []
synonym: "Pericardial cavity" EXACT []
xref: FMA:11350
xref: HOG:0000556
xref: MA:0000053
xref: ncithesaurus:Pericardial_Cavity
xref: ZFA:0001655
is_a: UBERON:0002323 ! body cavity
relationship: part_of UBERON:0002406 ! pericardial sac
[Term]
id: UBERON:0001075
name: body of vertebra
alt_id: UBERON:FMA_11945-MA_0001457
def: "." [Wikipedia:Body_of_vertebra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Body of vertebra" EXACT []
synonym: "centrum" EXACT []
synonym: "Corpus vertebrae (vertebrale)" EXACT []
synonym: "corpus vertebrae (vertebrale)" EXACT []
synonym: "Vertebral body" EXACT []
synonym: "vertebral body" EXACT []
synonym: "vertebral centrum" EXACT []
xref: AAO:0000697
xref: FMA:11945
xref: MA:0001457
xref: ncithesaurus:Vertebral_Body
xref: OpenCyc:Mx4rvXU4VpwpEbGdrcN5Y29ycA
xref: ZFA:0000126
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001076
name: spinous process of vertebra
alt_id: UBERON:FMA_11948-MA_0001455
def: "." [Wikipedia:Processus_spinosus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "neural spine" RELATED []
synonym: "Processus spinosus" EXACT []
synonym: "processus spinosus" EXACT []
synonym: "Spinous process of vertebra" EXACT []
synonym: "vertebra spinous process" EXACT []
xref: FMA:11948
xref: MA:0001455
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001077
name: transverse process of vertebra
alt_id: UBERON:FMA_11949-MA_0001456
def: "." [Wikipedia:Processus_transversus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Processus transversus" EXACT []
synonym: "processus transversus" EXACT []
synonym: "Transverse process of vertebra" EXACT []
synonym: "vertebra transverse process" EXACT []
xref: FMA:11949
xref: MA:0001456
is_a: UBERON:0003109 ! transverse process
is_a: UBERON:0003463 ! implied link automatically realized ! trunk bone
is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue
intersection_of: UBERON:0003109 ! transverse process
intersection_of: part_of UBERON:0002412 ! vertebra
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001078
name: pedicle of vertebra
alt_id: UBERON:FMA_11950-MA_0001458
def: "." [Wikipedia:Pedicle_of_vertebral_arch]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pedicle of vertebra" EXACT []
synonym: "Pedicle of vertebral arch" EXACT []
synonym: "pedicle of vertebral arch" EXACT []
synonym: "Vertebral pedicle" EXACT []
synonym: "vertebral pedicle" EXACT []
xref: FMA:11950
xref: MA:0001458
xref: OpenCyc:Mx4rvYdjdJwpEbGdrcN5Y29ycA
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001079
name: superior articular process of vertebra
alt_id: UBERON:FMA_11953-MA_0001452
comment: This class was created automatically from a combination of ontologies
synonym: "Cranial articular process of vertebra" EXACT []
synonym: "cranial articular process of vertebra" EXACT []
synonym: "prezygapophysis" RELATED []
synonym: "Processus articularis superior" EXACT []
synonym: "processus articularis superior" EXACT []
synonym: "Superior articular process of vertebra" EXACT []
synonym: "vertebra cranial articular process" EXACT []
xref: FMA:11953
xref: MA:0001452
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001080
name: inferior articular process of vertebra
alt_id: UBERON:FMA_11954-MA_0001451
comment: This class was created automatically from a combination of ontologies
synonym: "Caudal articular process of vertebra" EXACT []
synonym: "caudal articular process of vertebra" EXACT []
synonym: "Inferior articular process of vertebra" EXACT []
synonym: "postzygapophysis" RELATED []
synonym: "Processus articularis inferior" EXACT []
synonym: "processus articularis inferior" EXACT []
synonym: "vertebra caudal articular process" EXACT []
xref: FMA:11954
xref: MA:0001451
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001081
name: endocardium of ventricle
alt_id: UBERON:FMA_12148-MA_0000079-ZFA_0001615
def: "Endocardium that is part of the cardiac ventricle." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "Endocardium of ventricle" EXACT []
synonym: "ventricle endocardium" EXACT []
synonym: "Ventricular endocardium" EXACT []
synonym: "ventricular endocardium" EXACT []
xref: FMA:12148
xref: HOG:0000607
xref: MA:0000079
xref: ZFA:0001615
is_a: UBERON:0002165 ! endocardium
intersection_of: UBERON:0002165 ! endocardium
intersection_of: part_of UBERON:0002300 ! ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0001082
name: epicardium of ventricle
alt_id: UBERON:FMA_12150-ZFA_0005058
def: "The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space. Hu et al. 2001.." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "Epicardium of ventricle" EXACT []
synonym: "Ventricular epicardium" EXACT []
synonym: "ventricular epicardium" EXACT []
xref: FMA:12150
xref: TAO:0005058
xref: ZFA:0005058
is_a: UBERON:0002348 ! epicardium
intersection_of: UBERON:0002348 ! epicardium
intersection_of: part_of UBERON:0002300 ! ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0001083
name: myocardium of ventricle
alt_id: UBERON:FMA_12151-MA_0000082-ZFA_0005061
def: "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer Hu et al. 2001.." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "Myocardium of ventricle" EXACT []
synonym: "ventricle myocardium" EXACT []
synonym: "Ventricular myocardium" EXACT []
synonym: "ventricular myocardium" EXACT []
xref: FMA:12151
xref: HOG:0000604
xref: MA:0000082
xref: TAO:0005061
xref: ZFA:0005061
is_a: UBERON:0002349 ! myocardium
intersection_of: UBERON:0002349 ! myocardium
intersection_of: part_of UBERON:0002300 ! ventricle
relationship: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0001084
name: skin of head
alt_id: UBERON:FMA_12166-MA_0000582
comment: This class was created automatically from a combination of ontologies
synonym: "Head skin" EXACT []
synonym: "head skin" EXACT []
synonym: "Skin of head" EXACT []
xref: FMA:12166
xref: FMA:24756
xref: MA:0000582
xref: ncithesaurus:Head_Skin
is_a: UBERON:0000014 ! zone of skin
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0001085
name: skin of trunk
alt_id: UBERON:FMA_12167-MA_0000517
comment: This class was created automatically from a combination of ontologies
synonym: "Skin of trunk" EXACT []
synonym: "Trunk skin" EXACT []
synonym: "trunk skin" EXACT []
xref: FMA:12167
xref: FMA:23093
xref: MA:0000517
is_a: UBERON:0000014 ! zone of skin
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0001086
name: articular cartilage
alt_id: UBERON:FMA_12264-MA_0000487-ZFA_0001644
def: "." [Wikipedia:Articular_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Articular cartilage" EXACT []
synonym: "Cartilago articularis" EXACT []
synonym: "cartilago articularis" EXACT []
xref: BTO:0001572
xref: EFO:0001902
xref: FMA:12264
xref: GAID:101
xref: galen:ArticularCartilage
xref: MA:0000487
xref: ncithesaurus:Articular_Cartilage
xref: TAO:0001670
xref: ZFA:0001644
is_a: UBERON:0001994 ! hyaline cartilage
[Term]
id: UBERON:0001087
name: pleural fluid
alt_id: UBERON:FMA_12273-MA_0002532
def: "Transudate contained in the pleural cavity." [Wikipedia:Pleural_fluid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pleural fluid" EXACT []
xref: BTO:0003080
xref: FMA:12273
xref: MA:0002532
xref: MAT:0000500
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001088
name: urine
alt_id: UBERON:FMA_12274-MA_0002545-MIAA_0000058
def: "Excretion in liquid state processed by the kidney." [Wikipedia:Urine]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Urine" EXACT []
xref: BTO:0001419
xref: EFO:0001939
xref: ENVO:00002047
xref: FMA:12274
xref: GAID:1189
xref: MA:0002545
xref: MAT:0000058
xref: MIAA:0000058
xref: ncithesaurus:Urine
xref: OpenCyc:Mx4rvVjGppwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001089
name: sweat
alt_id: UBERON:FMA_12275-MA_0002539
def: "Secretion produced by a sweat gland." [Wikipedia:Sweat]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sweat" EXACT []
xref: BTO:0001254
xref: ENVO:02000025
xref: FMA:12275
xref: GAID:1172
xref: MA:0002539
xref: ncithesaurus:Sweat
xref: OpenCyc:Mx4rvVjJtZwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001090
name: synovial fluid
alt_id: UBERON:FMA_12277-MA_0002544
def: "Transudate contained in the synovial cavity of joints, and in the cavity of tendon sheaths and bursae." [Wikipedia:Synovial_fluid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Joint fluid" EXACT []
synonym: "joint fluid" EXACT []
synonym: "Synovial fluid" EXACT []
xref: ENVO:02000039
xref: FMA:12277
xref: GAID:265
xref: MA:0002544
xref: ncithesaurus:Synovial_Fluid
xref: ZFA:0005154
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001091
name: calcareous tooth
alt_id: UBERON:FMA_12516-MA_0000348-MIAA_0000041-XAO_0000431-ZFA_0000644-ZFA_0000694
def: "Organ with a cavity which consist of dentine surrounded by enamel. Examples: incisor, molar." [Wikipedia:Tooth_(animal), ZFIN:curator]
subset: uberon_slim
synonym: "ceratobranchial 5 tooth" NARROW []
synonym: "dentine containing tooth" EXACT []
synonym: "tooth" EXACT []
synonym: "vertebrate tooth" EXACT []
xref: BTO:0000397
xref: EFO:0000839
xref: EHDAA:8009
xref: EHDAA:8045
xref: FMA:12516
xref: GAID:1260
xref: HAO:0001019
xref: HOG:0000127
xref: MA:0000348
xref: MAT:0000041
xref: MIAA:0000041
xref: ncithesaurus:Tooth
xref: OpenCyc:Mx4rvVjUEZwpEbGdrcN5Y29ycA
xref: TAO:0000694
xref: XAO:0000431
xref: ZFA:0000694
is_a: UBERON:0000481 ! multi-tissue structure
relationship: develops_from UBERON:0001048 ! primordium
relationship: has_part UBERON:0001751 ! dentine
relationship: has_part UBERON:0001752 ! enamel
[Term]
id: UBERON:0001092
name: atlas
alt_id: UBERON:FMA_12519-MA_0001421
def: "." [Wikipedia:Atlas_(anatomy)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Atlas" EXACT []
synonym: "Atlas (CI)" EXACT []
synonym: "atlas (ci)" EXACT []
synonym: "C1 vertebra" EXACT []
synonym: "c1 vertebra" EXACT []
synonym: "cervical vertebra 1" EXACT []
synonym: "First cervical vertebra" EXACT []
synonym: "first cervical vertebra" EXACT []
xref: AAO:0000709
xref: EHDAA:10606
xref: FMA:12519
xref: GAID:236
xref: MA:0001421
xref: ncithesaurus:C1_Vertebra
is_a: UBERON:0002413 ! cervical vertebra
[Term]
id: UBERON:0001093
name: second cervical vertebra
alt_id: UBERON:FMA_12520-MA_0001422-ZFA_0000092
def: "second cervical vertebra (C2) of the spine." [Wikipedia:Axis_(anatomy)]
comment: note: not the same as ZFA term 'axis'
subset: uberon_slim
synonym: "Axis (CII)" EXACT []
synonym: "axis (cii)" EXACT []
synonym: "C2 vertebra" EXACT []
synonym: "midline" RELATED []
xref: EHDAA:10608
xref: FMA:12520
xref: GAID:237
xref: ncithesaurus:Axis
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001094
name: sacral vertebra
alt_id: UBERON:FMA_12526-XAO_0003078
def: "." [Wikipedia:Sacral_vertebra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sacral segment" EXACT []
synonym: "sacral segment" EXACT []
synonym: "Sacral vertebra" EXACT []
synonym: "Segment of sacrum" EXACT []
synonym: "segment of sacrum" EXACT []
xref: FMA:12526
xref: MA:0000313
xref: ncithesaurus:Sacral_Vertebra
xref: OpenCyc:Mx4rv-ZsXpwpEbGdrcN5Y29ycA
xref: XAO:0003078
is_a: UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001095
name: coccygeal vertebra
alt_id: UBERON:FMA_12527-XAO_0003079-ZFA_0000326
def: "Vertebrae bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae. " [Wikipedia:Caudal_vertebra, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Caudal vertebra" EXACT []
synonym: "caudal vertebra" EXACT []
synonym: "caudal vertebrae" RELATED []
synonym: "Coccygeal segment" EXACT []
synonym: "coccygeal segment" EXACT []
synonym: "Coccygeal vertebra" EXACT []
xref: FMA:12527
xref: galen:CoccygealVertebra
xref: MA:0001420
xref: ncithesaurus:Coccygeal_Vertebra
xref: OpenCyc:Mx4rv9IEzZwpEbGdrcN5Y29ycA
xref: TAO:0000326
xref: XAO:0003079
xref: ZFA:0000326
is_a: UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001096
name: wall of esophagus
alt_id: UBERON:FMA_12611-MA_0002691
comment: This class was created automatically from a combination of ontologies
synonym: "Esophageal wall" EXACT []
synonym: "esophageal wall" EXACT []
synonym: "Esophagus wall" EXACT []
synonym: "esophagus wall" EXACT []
synonym: "Wall of esophagus" EXACT []
xref: FMA:12611
xref: MA:0002691
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0003697 ! implied link automatically realized ! abdominal wall
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0001097
name: axillary lymph node
alt_id: UBERON:FMA_12771-MA_0000735
def: "." [Wikipedia:Axillary_lymph_node]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Axillary lymph node" EXACT []
synonym: "Axillary node" EXACT []
synonym: "axillary node" EXACT []
xref: FMA:12771
xref: MA:0000735
xref: ncithesaurus:Axillary_Lymph_Node
is_a: UBERON:0000029 ! lymph node
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001098
name: incisor tooth
alt_id: UBERON:FMA_12823-MA_0000349
def: "." [Wikipedia:Incisor_tooth]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "incisor" EXACT []
synonym: "Incisor tooth" EXACT []
xref: BTO:0001741
xref: EHDAA:8011
xref: EHDAA:8047
xref: FMA:12823
xref: GAID:1263
xref: MA:0000349
xref: ncithesaurus:Incisor
is_a: UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0001099
name: subcostal vein
alt_id: UBERON:FMA_12845-MA_0002222
def: "." [Wikipedia:Subcostal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Subcostal vein" EXACT []
xref: FMA:12845
xref: MA:0002222
xref: ncithesaurus:Subcostal_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001100
name: pectoralis minor
alt_id: UBERON:FMA_13109-MA_0002355
def: "." [Wikipedia:Pectoralis_minor]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pectoralis minor" EXACT []
xref: EHDAA:8313
xref: FMA:13109
xref: HOG:0000902
xref: MA:0002355
xref: ncithesaurus:Pectoralis_Minor
is_a: UBERON:0001495 ! pectoral muscle
[Term]
id: UBERON:0001101
name: external jugular vein
alt_id: UBERON:FMA_13110-MA_0002156
def: "." [Wikipedia:External_jugular_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "External jugular vein" EXACT []
synonym: "External jugular venous tree" EXACT []
synonym: "external jugular venous tree" EXACT []
xref: FMA:13110
xref: galen:ExternalJugularVein
xref: MA:0002156
xref: ncithesaurus:External_Jugular_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001102
name: cartilage of main bronchus
alt_id: UBERON:FMA_13117-MA_0001846
comment: This class was created automatically from a combination of ontologies
synonym: "Cartilage of main bronchus" EXACT []
synonym: "Main bronchial cartilage" EXACT []
synonym: "main bronchial cartilage" EXACT []
synonym: "main bronchus cartilage" EXACT []
xref: FMA:13117
xref: MA:0001846
is_a: UBERON:0001956 ! cartilage of bronchus
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0002182 ! main bronchus
relationship: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0001103
name: diaphragm
alt_id: UBERON:FMA_13295-MA_0001904
def: "The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs[GO]." [GO:0060539, Wikipedia:Diaphragm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Diaphragm" EXACT []
synonym: "Thoracic diaphragm" EXACT []
synonym: "thoracic diaphragm" EXACT []
xref: BTO:0000341
xref: EFO:0000937
xref: FMA:13295
xref: GAID:158
xref: HOG:0000713
xref: MA:0001904
xref: MAT:0000502
xref: ncithesaurus:Diaphragm
xref: OpenCyc:Mx4rvVivz5wpEbGdrcN5Y29ycA
is_a: UBERON:0002426 ! chest muscle
is_a: UBERON:0003831 ! implied link automatically realized ! respiratory system muscle
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0001104
name: anterior jugular vein
alt_id: UBERON:FMA_13318-MA_0002155
def: "." [Wikipedia:Anterior_jugular_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anterior external jugular vein" EXACT []
synonym: "anterior external jugular vein" EXACT []
synonym: "Anterior jugular vein" EXACT []
xref: FMA:13318
xref: MA:0002155
xref: ncithesaurus:Anterior_Jugular_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001105
name: clavicle
alt_id: UBERON:FMA_13321-MA_0001329
def: "." [Wikipedia:Clavicle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Clavicle" EXACT []
synonym: "Collar bone" EXACT []
synonym: "collar bone" EXACT []
xref: AAO:0000761
xref: FMA:13321
xref: GAID:182
xref: galen:Clavicle
xref: HOG:0000849
xref: MA:0001329
xref: ncithesaurus:Clavicle
xref: OpenCyc:Mx4rvVjijZwpEbGdrcN5Y29ycA
is_a: UBERON:0001440 ! skeleton of upper limb
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001106
name: cephalic vein
alt_id: UBERON:FMA_13324-MA_0002092
def: "." [Wikipedia:Cephalic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cephalic vein" EXACT []
synonym: "Cephalic vein of forearm" EXACT []
synonym: "cephalic vein of forearm" EXACT []
xref: FMA:13324
xref: galen:CephalicVein
xref: MA:0002092
xref: ncithesaurus:Cephalic_Vein
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0001107
name: sternohyoid
alt_id: UBERON:FMA_13341-MA_0002383-ZFA_0000283
def: "." [Wikipedia:Sternohyoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sternohyoid" EXACT []
xref: FMA:13341
xref: MA:0002383
xref: ncithesaurus:Sternohyoid
xref: TAO:0000283
xref: ZFA:0000283
is_a: UBERON:0002376 ! implied link automatically realized ! muscle of head
is_a: UBERON:0002377 ! muscle of neck
relationship: part_of UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0002376 ! muscle of head
relationship: part_of UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0001108
name: omohyoid
alt_id: UBERON:FMA_13342-MA_0002348
def: "." [Wikipedia:Omohyoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Omohyoid" EXACT []
xref: FMA:13342
xref: MA:0002348
xref: ncithesaurus:Omohyoid
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001109
name: sternothyroid
alt_id: UBERON:FMA_13343-MA_0002386
def: "." [Wikipedia:Sternothyroid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sternothyroid" EXACT []
xref: FMA:13343
xref: MA:0002386
xref: ncithesaurus:Sternothyroid
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001110
name: thyrohyoid
alt_id: UBERON:FMA_13344-MA_0002393
def: "." [Wikipedia:Thyrohyoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Thyrohyoid" EXACT []
xref: FMA:13344
xref: MA:0002393
xref: ncithesaurus:Thyrohyoid
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001111
name: intercostal muscle
alt_id: UBERON:FMA_13354-MA_0002324
def: "." [Wikipedia:Intercostal_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Intercostal muscle" EXACT []
synonym: "intercostales" EXACT []
xref: EFO:0001368
xref: FMA:13354
xref: GAID:159
xref: HOG:0000903
xref: MA:0002324
xref: ncithesaurus:Intercostal_Muscle
is_a: UBERON:0002426 ! chest muscle
[Term]
id: UBERON:0001112
name: latissimus dorsi
alt_id: UBERON:FMA_13357-MA_0002331
def: "." [Wikipedia:Latissimus_dorsi]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Latissimus dorsi" EXACT []
xref: EHDAA:8307
xref: FMA:13357
xref: HOG:0000930
xref: MA:0002331
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0001113
name: lobe of liver
alt_id: UBERON:FMA_13361-MA_0000360
comment: This class was created automatically from a combination of ontologies
synonym: "Hepatic lobe" EXACT []
synonym: "hepatic lobe" EXACT []
synonym: "Liver lobe" EXACT []
synonym: "liver lobe" EXACT []
synonym: "Lobe of liver" EXACT []
synonym: "Lobus hepatis" EXACT []
synonym: "lobus hepatis" EXACT []
xref: FMA:13361
xref: MA:0000360
xref: ncithesaurus:Liver_Lobe
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0001114
name: right lobe of liver
alt_id: UBERON:FMA_13362-MA_0000363
def: "." [Wikipedia:Right_lobe_of_liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "liver right lobe" EXACT []
synonym: "Right lobe of liver" EXACT []
xref: FMA:13362
xref: HOG:0001424
xref: MA:0000363
is_a: UBERON:0001113 ! lobe of liver
[Term]
id: UBERON:0001115
name: left lobe of liver
alt_id: UBERON:FMA_13363-MA_0000361
def: "." [Wikipedia:Left_lobe_of_liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Left liver lobe" EXACT []
synonym: "left liver lobe" EXACT []
synonym: "Left lobe of liver" EXACT []
synonym: "liver left lobe" EXACT []
xref: FMA:13363
xref: HOG:0001423
xref: MA:0000361
xref: ZFA:0005172
is_a: UBERON:0001113 ! lobe of liver
[Term]
id: UBERON:0001116
name: quadrate lobe of liver
alt_id: UBERON:FMA_13364-MA_0000365
def: "." [Wikipedia:Quadrate_lobe_of_liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "liver quadrate lobe" EXACT []
synonym: "Lobus quadratus" EXACT []
synonym: "lobus quadratus" EXACT []
synonym: "Quadrate lobe of liver" EXACT []
xref: FMA:13364
xref: HOG:0000509
xref: MA:0000365
xref: ncithesaurus:Lobus_Quadratus
is_a: UBERON:0001114 ! right lobe of liver
[Term]
id: UBERON:0001117
name: caudate lobe of liver
alt_id: UBERON:FMA_13365-MA_0000364
def: "." [Wikipedia:Caudate_lobe_of_liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Caudate lobe of liver" EXACT []
synonym: "Hepatovenous segment I" EXACT []
synonym: "hepatovenous segment i" EXACT []
synonym: "liver caudate lobe" EXACT []
synonym: "liver caudate process" RELATED []
synonym: "Lobus caudatus" EXACT []
synonym: "lobus caudatus" EXACT []
synonym: "Posterior hepatic segment I" EXACT []
synonym: "posterior hepatic segment i" EXACT []
synonym: "Posterior liver" EXACT []
synonym: "posterior liver" EXACT []
synonym: "Posterior part of liver" EXACT []
synonym: "posterior part of liver" EXACT []
synonym: "Segment I of liver" EXACT []
synonym: "segment i of liver" EXACT []
synonym: "Spiegelian lobe" EXACT []
synonym: "spiegelian lobe" EXACT []
synonym: "Spigel lobe" EXACT []
synonym: "spigel lobe" EXACT []
xref: FMA:13365
xref: HOG:0000508
xref: MA:0000364
xref: ncithesaurus:Lobus_Caudatus
is_a: UBERON:0001114 ! right lobe of liver
relationship: part_of UBERON:0001113 ! lobe of liver
[Term]
id: UBERON:0001118
name: lobe of thyroid gland
alt_id: UBERON:FMA_13367-MA_0000131
comment: This class was created automatically from a combination of ontologies
synonym: "Lobe of thyroid gland" EXACT []
synonym: "Lobus (glandula thyroidea)" EXACT []
synonym: "lobus (glandula thyroidea)" EXACT []
synonym: "Thyroid gland lobe" EXACT []
synonym: "thyroid gland lobe" EXACT []
xref: FMA:13367
xref: MA:0000131
xref: ncithesaurus:Thyroid_Gland_Lobe
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002046 ! thyroid follicle
[Term]
id: UBERON:0001119
name: right lobe of thyroid gland
alt_id: UBERON:FMA_13368-MA_0000729
comment: This class was created automatically from a combination of ontologies
synonym: "Lobus dexter (glandula thyroidea)" EXACT []
synonym: "lobus dexter (glandula thyroidea)" EXACT []
synonym: "Right lobe of thyroid gland" EXACT []
synonym: "thyroid gland right lobe" EXACT []
xref: FMA:13368
xref: MA:0000729
is_a: UBERON:0001118 ! lobe of thyroid gland
[Term]
id: UBERON:0001120
name: left lobe of thyroid gland
alt_id: UBERON:FMA_13369-MA_0000728
comment: This class was created automatically from a combination of ontologies
synonym: "Left lobe of thyroid gland" EXACT []
synonym: "Lobus sinister (glandula thyroidea)" EXACT []
synonym: "lobus sinister (glandula thyroidea)" EXACT []
synonym: "thyroid gland left lobe" EXACT []
xref: FMA:13369
xref: MA:0000728
is_a: UBERON:0001118 ! lobe of thyroid gland
[Term]
id: UBERON:0001121
name: longus colli
alt_id: UBERON:FMA_13370-MA_0002341
def: "." [Wikipedia:Longus_colli]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Longus colli" EXACT []
xref: FMA:13370
xref: MA:0002341
xref: ncithesaurus:Longus_Colli
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0001122
name: scalenus medius
alt_id: UBERON:FMA_13386-MA_0002370
def: "." [Wikipedia:Scalenus_medius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Medial scalene muscle" EXACT []
synonym: "medial scalene muscle" EXACT []
synonym: "Middle scalene" EXACT []
synonym: "middle scalene" EXACT []
synonym: "Scalenus medius" EXACT []
xref: FMA:13386
xref: MA:0002370
xref: ncithesaurus:Scalenus_Medius
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001123
name: scalenus posterior
alt_id: UBERON:FMA_13387-MA_0002369
def: "." [Wikipedia:Scalenus_posterior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Posterior scalene" EXACT []
synonym: "posterior scalene" EXACT []
synonym: "Posterior scalene muscle" EXACT []
synonym: "posterior scalene muscle" EXACT []
synonym: "scalenus dorsalis" EXACT []
synonym: "Scalenus posterior" EXACT []
xref: FMA:13387
xref: MA:0002369
xref: ncithesaurus:Scalenus_Dorsalis
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001124
name: scapula
alt_id: UBERON:FMA_13394-MA_0001330-ZFA_0000583
def: "." [Wikipedia:Scapula]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Scapula" EXACT []
synonym: "Shoulder blade" EXACT []
synonym: "shoulder blade" EXACT []
xref: AAO:0000751
xref: BTO:0001218
xref: EFO:0001400
xref: FMA:13394
xref: GAID:186
xref: HOG:0001398
xref: MA:0001330
xref: ncithesaurus:Scapula
xref: OpenCyc:Mx4rvVji0JwpEbGdrcN5Y29ycA
xref: TAO:0000583
xref: ZFA:0000583
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003461 ! implied link automatically realized ! shoulder bone
relationship: part_of UBERON:0001440 ! skeleton of upper limb
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001125
name: serratus anterior
alt_id: UBERON:FMA_13397-MA_0002378
def: "." [Wikipedia:Serratus_anterior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Boxer's muscle" EXACT []
synonym: "boxer's muscle" EXACT []
synonym: "Serratus anterior" EXACT []
synonym: "Serratus anterior muscle" EXACT []
synonym: "serratus anterior muscle" EXACT []
synonym: "serratus ventralis" EXACT []
xref: FMA:13397
xref: HOG:0000679
xref: MA:0002378
xref: ncithesaurus:Serratus_Ventralis
xref: OpenCyc:Mx4rvWn_D5wpEbGdrcN5Y29ycA
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0001126
name: serratus posterior superior
alt_id: UBERON:FMA_13401-MA_0002377
def: "." [Wikipedia:Serratus_posterior_superior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "serratus dorsalis cranialis" EXACT []
synonym: "Serratus posterior superior" EXACT []
synonym: "Superior serratus posterior" EXACT []
synonym: "superior serratus posterior" EXACT []
xref: FMA:13401
xref: MA:0002377
xref: ncithesaurus:Serratus_Dorsalis_Cranialis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001127
name: serratus posterior inferior
alt_id: UBERON:FMA_13402-MA_0002376
def: "." [Wikipedia:Serratus_posterior_inferior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Inferior serratus posterior" EXACT []
synonym: "inferior serratus posterior" EXACT []
synonym: "serratus dorsalis caudalis" EXACT []
synonym: "Serratus posterior inferior" EXACT []
xref: FMA:13402
xref: MA:0002376
xref: ncithesaurus:Serratus_Dorsalis_Caudalis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001128
name: sternocleidomastoid
alt_id: UBERON:FMA_13407-MA_0002384
def: "." [Wikipedia:Sternocleidomastoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sternocleidomastoid" EXACT []
synonym: "Sternocleidomastoid muscle" EXACT []
synonym: "sternocleidomastoid muscle" EXACT []
synonym: "sternomastoid" EXACT []
xref: FMA:13407
xref: MA:0002384
xref: ncithesaurus:Sternocleidomastoid_Muscle
xref: OpenCyc:Mx4rv2bMg5wpEbGdrcN5Y29ycA
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001129
name: subscapularis
alt_id: UBERON:FMA_13413-MA_0002388
def: "." [Wikipedia:Subscapularis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Subscapularis" EXACT []
synonym: "Subscapularis muscle" EXACT []
synonym: "subscapularis muscle" EXACT []
xref: EHDAA:8317
xref: FMA:13413
xref: HOG:0000850
xref: MA:0002388
xref: ncithesaurus:Subscapularis
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0001130
name: vertebral column
alt_id: UBERON:FMA_13478-MA_0002416-XAO_0003074-ZFA_0001559
def: "." [Wikipedia:Vertebral_column]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Backbone" EXACT []
synonym: "backbone" EXACT []
synonym: "Spinal column" EXACT []
synonym: "spinal column" EXACT []
synonym: "Spine" EXACT []
synonym: "spine" EXACT []
synonym: "Vertebral column" EXACT []
xref: AAO:0000734
xref: BTO:0000818
xref: EFO:0001369
xref: EHDA:10119
xref: EMAPA:16666
xref: FMA:13478
xref: GAID:106
xref: HOG:0001142
xref: MA:0002416
xref: ncithesaurus:Vertebral_Column
xref: OpenCyc:Mx4rv6GF55wpEbGdrcN5Y29ycA
xref: TAO:0001559
xref: XAO:0003074
xref: ZFA:0001559
is_a: UBERON:0000075 ! subdivision of skeleton
relationship: part_of UBERON:0001137 ! back
relationship: part_of UBERON:0002090 ! axial skeleton
[Term]
id: UBERON:0001131
name: vertebral foramen
alt_id: UBERON:FMA_13479-MA_0001454
def: "." [Wikipedia:Vertebral_foramen]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "vertebra neural canal" EXACT []
synonym: "Vertebral foramen" EXACT []
xref: FMA:13479
xref: MA:0001454
xref: OpenCyc:Mx4rv_EvQZwpEbGdrcN5Y29ycA
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0001132
name: parathyroid gland
alt_id: UBERON:FMA_13890-MA_0000128-MIAA_0000082-XAO_0000167
def: "The parathyroid gland is an organ specialised for secretion of parathyroid hormone[GO]." [Wikipedia:Parathyroid_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "inferior parathyroid" BROAD []
synonym: "parathyroid" EXACT []
synonym: "Parathyroid gland" EXACT []
synonym: "parathyroid secreting cell" RELATED []
synonym: "superior parrathyroid" BROAD []
xref: BTO:0000997
xref: EFO:0000862
xref: FMA:13890
xref: GAID:452
xref: HOG:0001188
xref: MA:0000128
xref: MAT:0000082
xref: MIAA:0000082
xref: ncithesaurus:Parathyroid_Gland
xref: XAO:0000167
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0001133
name: cardiac muscle tissue
alt_id: UBERON:FMA_14068-MA_0002441
def: "Muscle composed of cardiac muscle cells that is part of the heart[ZFA]. involuntary striated muscle found in the walls of the heart, specifically the myocardium[Wikipedia]. Tissue which consists of cardiac myocytes surrounded by cardiac endomysium. Examples: Cardiac muscle tissue proper, conducting tissue of heart[FMA]." [FMA:14068]
comment: check relationship with myocardium
subset: uberon_slim
synonym: "cardiac muscle" EXACT []
synonym: "Cardiac muscle tissue" EXACT []
xref: BTO:0000199
xref: FMA:14068
xref: galen:CardiacMuscle
xref: galen:CardiacMuscleTissue
xref: MA:0002441
xref: ZFA:0005280
is_a: UBERON:0002036 ! striated muscle tissue
intersection_of: UBERON:0002385 ! muscle tissue
intersection_of: part_of UBERON:0002349 ! myocardium
relationship: part_of UBERON:0002349 ! myocardium
[Term]
id: UBERON:0001134
name: skeletal muscle tissue
alt_id: UBERON:FMA_14069-MA_0002439
def: "Tissue which consists of skeletal muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue of biceps, Skeletal muscle tissue of diaphragm." [Wikipedia:Skeletal_muscle]
comment: TODO - add skeletal muscle organ? See GO:0060538 skeletal muscle organ development
subset: uberon_slim
synonym: "skeletal muscle" EXACT []
synonym: "Skeletal muscle tissue" EXACT []
xref: BTO:0001103
xref: EFO:0000888
xref: EHDAA:2923
xref: EHDAA:5035
xref: EHDAA:5043
xref: EHDAA:5978
xref: EHDAA:5984
xref: EHDAA:8277
xref: EHDAA:8291
xref: EHDAA:8326
xref: EHDAA:9146
xref: FMA:14069
xref: HOG:0000319
xref: MA:0002439
xref: MAT:0000302
xref: MIAA:0000302
xref: ncithesaurus:Skeletal_Muscle_Tissue
xref: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA
xref: XAO:0000174
xref: ZFA:0005277
is_a: UBERON:0002036 ! striated muscle tissue
relationship: develops_from UBERON:0003082 ! myotome
[Term]
id: UBERON:0001135
name: smooth muscle tissue
alt_id: UBERON:FMA_14070-MA_0002440
def: "Tissue which consists of smooth muscle fibers surrounded by a reticulum of collagen and elastic fibers. Examples: Arrector muscle of hair, Muscularis mucosae." [Wikipedia:Smooth_muscle_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Involuntary muscle" EXACT []
synonym: "involuntary muscle" EXACT []
synonym: "Non-striated muscle" EXACT []
synonym: "non-striated muscle" EXACT []
synonym: "smooth muscle" EXACT []
synonym: "Smooth muscle tissue" EXACT []
xref: BTO:0001260
xref: EFO:0000889
xref: FMA:14070
xref: HOG:0001246
xref: MA:0000166
xref: MA:0002440
xref: MAT:0000303
xref: ncithesaurus:Smooth_Muscle_Tissue
xref: WBbt:0005780
xref: ZFA:0005274
is_a: UBERON:0002385 ! muscle tissue
[Term]
id: UBERON:0001136
name: mesothelium
alt_id: UBERON:FMA_14074-MA_0000565
def: "Simple squamous epithelium of mesodermal origin which lines serous membranes. Examples: mesothelium of pleura, mesothelium of peritoneum. Wikipedia: The mesothelium is a membrane that forms the lining of several body cavities: the pleura (thoracal cavity), peritoneum (abdominal cavity including the mesentery) and pericardium (heart sac). Mesothelial tissue also surrounds the male internal reproductive organs (the tunica vaginalis testis) and covers the internal reproductive organs of women (the tunica serosa uteri). Mesothelium that covers the internal organs is called visceral mesothelium, while the layer that covers the body walls is called the parietal mesothelium." [http://en.wikipedia.org/wiki/Mesothelium, Wikipedia:Mesothelium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Meso-epithelium" EXACT []
synonym: "meso-epithelium" EXACT []
synonym: "Mesothelium" EXACT []
xref: BTO:0002422
xref: EHDAA:2331
xref: EHDAA:2339
xref: EHDAA:2349
xref: EHDAA:295
xref: EHDAA:6073
xref: EHDAA:640
xref: EHDAA:646
xref: FMA:14074
xref: MA:0000565
xref: ncithesaurus:Mesothelium
is_a: UBERON:0000487 ! simple squamous epithelium
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0001137
name: back
alt_id: UBERON:FMA_14181-MA_0000020
def: "." [Wikipedia:Back]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Back" EXACT []
xref: EFO:0001405
xref: FMA:14181
xref: GAID:30
xref: galen:Back
xref: MA:0000020
xref: ncithesaurus:Back
xref: OpenCyc:Mx4rvVkEU5wpEbGdrcN5Y29ycA
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0001138
name: superior mesenteric vein
alt_id: UBERON:FMA_14332-MA_0002179
def: "." [Wikipedia:Superior_mesenteric_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Superior mesenteric vein" EXACT []
xref: BTO:0002783
xref: EHDAA:5414
xref: FMA:14332
xref: HOG:0000552
xref: MA:0002179
xref: ncithesaurus:Superior_Mesenteric_Vein
is_a: UBERON:0002017 ! portal vein
[Term]
id: UBERON:0001139
name: common iliac vein
alt_id: UBERON:FMA_14333-MA_0002143
def: "." [Wikipedia:Common_iliac_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Common iliac vein" EXACT []
synonym: "Common iliac venous tree" EXACT []
synonym: "common iliac venous tree" EXACT []
xref: FMA:14333
xref: galen:CommonIliacVein
xref: MA:0002143
xref: ncithesaurus:Common_Iliac_Vein
xref: OpenCyc:Mx4rv92CGZwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001140
name: renal vein
alt_id: UBERON:FMA_14334-MA_0002210
def: "." [Wikipedia:Renal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Renal vein" EXACT []
synonym: "Renal venous tree" EXACT []
synonym: "renal venous tree" EXACT []
xref: BTO:0002681
xref: EHDAA:8722
xref: FMA:14334
xref: GAID:544
xref: MA:0002210
xref: MA:0002591
xref: ncithesaurus:Renal_Vein
xref: OpenCyc:Mx4rvdUXKJwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003517 ! implied link automatically realized ! kidney blood vessel
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001141
name: right renal vein
alt_id: UBERON:FMA_14335-MA_0002212
comment: This class was created automatically from a combination of ontologies
synonym: "Right renal vein" EXACT []
xref: FMA:14335
xref: MA:0002212
xref: ncithesaurus:Right_Renal_Vein
is_a: UBERON:0001140 ! renal vein
[Term]
id: UBERON:0001142
name: left renal vein
alt_id: UBERON:FMA_14336-MA_0002211
def: "." [Wikipedia:Left_renal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Left renal vein" EXACT []
xref: FMA:14336
xref: MA:0002211
xref: ncithesaurus:Left_Renal_Vein
is_a: UBERON:0001140 ! renal vein
[Term]
id: UBERON:0001143
name: hepatic vein
alt_id: UBERON:FMA_14337-XAO_0000387-ZFA_0000670
def: "." [Wikipedia:Hepatic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hepatic vein" EXACT []
synonym: "hepatic veins" RELATED []
synonym: "Vena hepatica" EXACT []
synonym: "vena hepatica" EXACT []
xref: FMA:14337
xref: GAID:534
xref: galen:HepaticVein
xref: ncithesaurus:Hepatic_Vein
xref: OpenCyc:Mx4rv5GivJwpEbGdrcN5Y29ycA
xref: TAO:0000670
xref: XAO:0000387
xref: ZFA:0000670
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0001144
name: testicular vein
alt_id: UBERON:FMA_14344-MA_0002234
def: "." [Wikipedia:Testicular_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Testicular vein" EXACT []
synonym: "Testicular venous tree" EXACT []
synonym: "testicular venous tree" EXACT []
xref: BTO:0002678
xref: FMA:14344
xref: MA:0002234
xref: OpenCyc:Mx4rv1WIHpwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003848 ! implied link automatically realized ! gonadal vein
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002117 ! testicle
[Term]
id: UBERON:0001145
name: ovarian vein
alt_id: UBERON:FMA_14346-MA_0002186
def: "." [Wikipedia:Ovarian_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ovarian vein" EXACT []
xref: FMA:14346
xref: MA:0002186
xref: ncithesaurus:Ovarian_Vein
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003520 ! implied link automatically realized ! pelvis blood vessel
is_a: UBERON:0003848 ! implied link automatically realized ! gonadal vein
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0000992 ! ovary
[Term]
id: UBERON:0001146
name: suprarenal vein
alt_id: UBERON:FMA_14348-MA_0002229
def: "." [Wikipedia:Suprarenal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Suprarenal vein" EXACT []
xref: EHDAA:8731
xref: FMA:14348
xref: MA:0002229
xref: ncithesaurus:Suprarenal_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001147
name: trunk of peripheral nerve
alt_id: UBERON:FMA_14383-MA_0000229
comment: This class was created automatically from a combination of ontologies
synonym: "peripheral nerve trunk" EXACT []
synonym: "Peripheral neural trunk" EXACT []
synonym: "peripheral neural trunk" EXACT []
synonym: "Trunk of peripheral nerve" EXACT []
xref: FMA:14383
xref: MA:0000229
is_a: UBERON:0002464 ! nerve trunk
[Term]
id: UBERON:0001148
name: median nerve
alt_id: UBERON:FMA_14385-MA_0001168
def: "." [Wikipedia:Median_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Median nerve" EXACT []
xref: EHDAA:5648
xref: FMA:14385
xref: GAID:843
xref: MA:0001168
xref: ncithesaurus:Median_Nerve
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve
relationship: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001814 ! brachial nerve plexus
[Term]
id: UBERON:0001149
name: bare area of liver
alt_id: UBERON:FMA_14480-MA_0000359
comment: This class was created automatically from a combination of ontologies
synonym: "Area nuda (Hepar)" EXACT []
synonym: "area nuda (hepar)" EXACT []
synonym: "Area nuda hepatis" EXACT []
synonym: "area nuda hepatis" EXACT []
synonym: "Bare area of liver" EXACT []
synonym: "liver bare area" EXACT []
xref: FMA:14480
xref: MA:0000359
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001114 ! right lobe of liver
[Term]
id: UBERON:0001150
name: body of pancreas
alt_id: UBERON:FMA_14518-MA_0000121
def: "." [Wikipedia:Body_of_pancreas]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Body of pancreas" EXACT []
synonym: "pancreas body" EXACT []
synonym: "pancreas corpus" RELATED []
synonym: "Pancreatic body" EXACT []
synonym: "pancreatic body" EXACT []
xref: FMA:14518
xref: HOG:0000451
xref: MA:0000121
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0001151
name: tail of pancreas
alt_id: UBERON:FMA_14519-MA_0000123
def: "." [Wikipedia:Tail_of_pancreas]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Left extremity of pancreas" EXACT []
synonym: "left extremity of pancreas" EXACT []
synonym: "pancreas tail" EXACT []
synonym: "Pancreatic tail" EXACT []
synonym: "pancreatic tail" EXACT []
synonym: "Tail of pancreas" EXACT []
xref: FMA:14519
xref: HOG:0000452
xref: MA:0000123
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0001152
name: cystic duct
alt_id: UBERON:FMA_14539-MA_0000355
def: "." [Wikipedia:Cystic_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cystic duct" EXACT []
xref: EHDAA:3045
xref: FMA:14539
xref: GAID:290
xref: galen:CysticDuct
xref: HOG:0000213
xref: MA:0000355
xref: ncithesaurus:Cystic_Duct
xref: OpenCyc:Mx4rveBeC5wpEbGdrcN5Y29ycA
xref: ZFA:0005166
is_a: UBERON:0002394 ! bile duct
relationship: part_of UBERON:0001173 ! biliary tree
[Term]
id: UBERON:0001153
name: cecum
alt_id: UBERON:FMA_14541-MA_0000334-MIAA_0000288
def: "Pouch, connecting the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction." [Wikipedia:Cecum]
comment: The cecum is present in mammals and squid,[1] and two ceca are present in most birds (and some reptiles). Most herbivores have a relatively large cecum , hosting a large number of bacteria, which aid in the enzymatic breakdown of plant materials such as cellulose. Exclusive carnivores, whose diets contain little or no plant material, have a reduced cecum; often partially or wholly replaced by the vermiform appendix. It is in the large intestine which is near the small intestine.
subset: uberon_slim
synonym: "caecum" EXACT []
synonym: "Intestinum crassum caecum" EXACT []
synonym: "intestinum crassum caecum" EXACT []
xref: BTO:0000166
xref: EFO:0000850
xref: FMA:14541
xref: GAID:307
xref: galen:Cecum
xref: MA:0000334
xref: MIAA:0000288
xref: ncithesaurus:Cecum
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001156 ! ascending colon
[Term]
id: UBERON:0001154
name: appendix
alt_id: UBERON:FMA_14542-MA_0001540-MIAA_0000287
def: "Organ with organ cavity which is continuous proximally with the cecum and distally terminates in the tip of the appendix. Examples: There is only one appendix.[FMA]. a narrowed, thickened, lymphoid-rich caecal apex [Fisher 2000]." [Wikipedia:Vermiform_appendix]
subset: uberon_slim
synonym: "apex of cecum" RELATED []
synonym: "Appendix" EXACT []
synonym: "caecal appendix" EXACT []
synonym: "Vermiform appendix" EXACT []
synonym: "vermiform appendix" EXACT []
synonym: "vermix" EXACT []
xref: BTO:0000084
xref: EFO:0000849
xref: FMA:14542
xref: GAID:308
xref: HOG:0001306
xref: MA:0001540
xref: MAT:0000287
xref: MIAA:0000287
xref: ncithesaurus:Vermiform_Appendix
xref: OpenCyc:Mx4rvVjGgJwpEbGdrcN5Y29ycA
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001153 ! cecum
[Term]
id: UBERON:0001155
name: colon
alt_id: UBERON:FMA_14543-FMA_7201-MA_0000333-MA_0000335-MAP_0000001-MIAA_0000046-XAO_0000131-XAO_0000243-ZFA_0000706
def: "Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005." [Wikipedia:Colon_(anatomy), ZFIN:curator]
comment: TODO: abstract this such that it legitemately covers all vertebrates
subset: uberon_slim
synonym: "Colon" EXACT []
synonym: "hindgut" RELATED []
synonym: "Large bowel" EXACT []
synonym: "large bowel" EXACT []
synonym: "posterior intestine" NARROW []
synonym: "posterior intestine - zebrafish" BROAD []
xref: BTO:0000269
xref: EFO:0000361
xref: FMA:14543
xref: GAID:309
xref: galen:Colon
xref: HOG:0000648
xref: MA:0000335
xref: MAP:0000001
xref: MAT:0000526
xref: ncithesaurus:Colon
xref: OpenCyc:Mx4rvgLEM5wpEbGdrcN5Y29ycA
xref: TAO:0000706
xref: XAO:0000243
xref: ZFA:0000706
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0000059 ! large intestine
[Term]
id: UBERON:0001156
name: ascending colon
alt_id: UBERON:FMA_14545-MA_0001541-MIAA_0000311
def: "Organ part which is continuous with the cecum proximally and the transverse colon distally." [Wikipedia:Ascending_colon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ascending colon" EXACT []
xref: EFO:0000843
xref: FMA:14545
xref: galen:AscendingColon
xref: MA:0001541
xref: MAT:0000311
xref: MIAA:0000311
xref: ncithesaurus:Ascending_Colon
xref: OpenCyc:Mx4rv3H0FZwpEbGdrcN5Y29ycA
is_a: UBERON:0000168 ! segment of colon
is_a: UBERON:0001155 ! colon
relationship: continuous_with UBERON:0001157 ! transverse colon
[Term]
id: UBERON:0001157
name: transverse colon
alt_id: UBERON:FMA_14546-MA_0001543-MIAA_0000312
def: "." [Wikipedia:Transverse_colon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Transverse colon" EXACT []
xref: EFO:0000844
xref: FMA:14546
xref: MA:0001543
xref: MAT:0000312
xref: MIAA:0000312
xref: ncithesaurus:Transverse_Colon
xref: OpenCyc:Mx4rvg7qyJwpEbGdrcN5Y29ycA
is_a: UBERON:0000168 ! segment of colon
is_a: UBERON:0001155 ! colon
relationship: continuous_with UBERON:0001158 ! descending colon
[Term]
id: UBERON:0001158
name: descending colon
alt_id: UBERON:FMA_14547-MA_0001542-MIAA_0000313
def: "." [Wikipedia:Descending_colon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Descending colon" EXACT []
xref: EFO:0000845
xref: FMA:14547
xref: galen:DescendingColon
xref: MA:0001542
xref: MAT:0000313
xref: MIAA:0000313
xref: ncithesaurus:Descending_Colon
is_a: UBERON:0000168 ! segment of colon
is_a: UBERON:0001155 ! colon
relationship: continuous_with UBERON:0001159 ! sigmoid colon
[Term]
id: UBERON:0001159
name: sigmoid colon
alt_id: UBERON:FMA_14548-MIAA_0000314
def: "." [Wikipedia:Sigmoid_colon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sigmoid colon" EXACT []
xref: EFO:0000846
xref: FMA:14548
xref: MAT:0000314
xref: MIAA:0000314
xref: ncithesaurus:Sigmoid_Colon
is_a: UBERON:0000168 ! segment of colon
relationship: continuous_with UBERON:0001052 ! rectum
relationship: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0001160
name: fundus of stomach
alt_id: UBERON:FMA_14559-MA_0001612
def: "The fundus is the portion of the stomach that lies above the cardiac notch[GO]." [GO:0014825, Wikipedia:Fundus_of_stomach]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Fundus gastricus (ventricularis)" EXACT []
synonym: "fundus gastricus (ventricularis)" EXACT []
synonym: "Fundus of stomach" EXACT []
synonym: "Gastric fundus" EXACT []
synonym: "gastric fundus" RELATED []
synonym: "stomach fundus" EXACT []
xref: BTO:0000502
xref: EFO:0002554
xref: FMA:14559
xref: GAID:320
xref: galen:GastricFundus
xref: HOG:0000421
xref: MA:0001612
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0001161
name: body of stomach
alt_id: UBERON:FMA_14560-MA_0002559
def: "The body of stomach is the part of the stomach that lies between the fundus above and the pyloric antrum below; its boundaries are poorly defined[GO]." [GO:0014845, Wikipedia:Body_of_stomach]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Body of stomach" EXACT []
synonym: "Corpus gastricum (ventriculare)" EXACT []
synonym: "corpus gastricum (ventriculare)" EXACT []
synonym: "Gastric body" EXACT []
synonym: "gastric body" EXACT []
synonym: "Gastric corpus" EXACT []
synonym: "gastric corpus" RELATED []
synonym: "stomach body" EXACT []
xref: BTO:0000505
xref: FMA:14560
xref: galen:GastricCorpus
xref: MA:0002559
xref: ncithesaurus:Body_of_Stomach
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0001162
name: cardia of stomach
alt_id: UBERON:FMA_14561-MA_0001609
comment: This class was created automatically from a combination of ontologies
synonym: "Cardia of stomach" EXACT []
synonym: "Cardial part of stomach" EXACT []
synonym: "cardial part of stomach" EXACT []
synonym: "Gastric cardia" EXACT []
synonym: "gastric cardia" EXACT []
synonym: "Pars cardiaca (gaster)" EXACT []
synonym: "pars cardiaca (gaster)" EXACT []
synonym: "stomach cardiac region" EXACT []
xref: FMA:14561
xref: MA:0001609
xref: ncithesaurus:Cardia
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0001163
name: lesser curvature of stomach
alt_id: UBERON:FMA_14572-MA_0001616
def: "." [Wikipedia:Lesser_curvature_of_stomach]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lesser curvature of stomach" EXACT []
synonym: "stomach lesser curvature" EXACT []
xref: FMA:14572
xref: galen:LesserCurvatureOfStomach
xref: MA:0001616
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0001164
name: greater curvature of stomach
alt_id: UBERON:FMA_14574-MA_0001615
def: "." [Wikipedia:Greater_curvature_of_stomach]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Greater curvature of stomach" EXACT []
synonym: "stomach greater curvature" EXACT []
xref: FMA:14574
xref: galen:GreaterCurvatureOfStomach
xref: MA:0001615
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0001165
name: pyloric antrum
alt_id: UBERON:FMA_14579-MA_0001624
def: "." [Wikipedia:Pyloric_antrum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Antrum of stomach" EXACT []
synonym: "antrum of stomach" EXACT []
synonym: "Gastric antrum" EXACT []
synonym: "gastric antrum" RELATED []
synonym: "Pyloric antrum" EXACT []
synonym: "stomach antrum" RELATED []
synonym: "stomach pyloric antrum" EXACT []
xref: BTO:0001732
xref: EFO:0002555
xref: FMA:14579
xref: GAID:332
xref: MA:0001624
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0001166
name: pylorus
alt_id: UBERON:FMA_14581-MA_0002560
def: "." [Wikipedia:Pylorus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pyloric part of stomach" EXACT []
synonym: "pyloric part of stomach" EXACT []
synonym: "Pylorus" EXACT []
synonym: "stomach pyloric region" EXACT []
xref: FMA:14581
xref: GAID:333
xref: MA:0002560
xref: ncithesaurus:Pylorus
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0001167
name: wall of stomach
alt_id: UBERON:FMA_14582-MA_0002692
comment: This class was created automatically from a combination of ontologies
synonym: "Gastric wall" EXACT []
synonym: "gastric wall" EXACT []
synonym: "Stomach wall" EXACT []
synonym: "stomach wall" EXACT []
synonym: "Wall of stomach" EXACT []
xref: FMA:14582
xref: MA:0002692
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0003697 ! implied link automatically realized ! abdominal wall
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0001168
name: wall of small intestine
alt_id: UBERON:FMA_14615-MA_0002696
comment: This class was created automatically from a combination of ontologies
synonym: "Small intestinal wall" EXACT []
synonym: "small intestinal wall" EXACT []
synonym: "small intestine wall" EXACT []
synonym: "Wall of small intestine" EXACT []
xref: FMA:14615
xref: MA:0002696
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0003697 ! implied link automatically realized ! abdominal wall
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0001169
name: wall of large intestine
alt_id: UBERON:FMA_14619-MA_0002695
comment: This class was created automatically from a combination of ontologies
synonym: "Large intestinal wall" EXACT []
synonym: "large intestinal wall" EXACT []
synonym: "large intestine wall" EXACT []
synonym: "Wall of large intestine" EXACT []
xref: FMA:14619
xref: MA:0002695
is_a: UBERON:0000060 ! anatomical wall
is_a: UBERON:0001262 ! implied link automatically realized ! wall of intestine
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001262 ! wall of intestine
[Term]
id: UBERON:0001170
name: mesentery of small intestine
alt_id: UBERON:FMA_14643-MA_0001555
comment: This class was created automatically from a combination of ontologies
synonym: "Mesentery of small intestine" EXACT []
synonym: "Mesentery proper" EXACT []
synonym: "mesentery proper" EXACT []
synonym: "Small intestinal mesentery" EXACT []
synonym: "small intestinal mesentery" EXACT []
synonym: "small intestine mesentery" EXACT []
xref: FMA:14643
xref: MA:0001555
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001206 ! implied link automatically realized ! serosa of small intestine
is_a: UBERON:0002095 ! mesentery
is_a: UBERON:0003393 ! implied link automatically realized ! mesentery of urinary system
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001178 ! visceral peritoneum
[Term]
id: UBERON:0001171
name: portal lobule
alt_id: UBERON:FMA_14653-MA_0002498
comment: This class was created automatically from a combination of ontologies
synonym: "Portal lobule" EXACT []
xref: FMA:14653
xref: MA:0002498
xref: ncithesaurus:Portal_Lobule
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001280 ! liver parenchyma
[Term]
id: UBERON:0001172
name: hepatic acinus
alt_id: UBERON:FMA_14654-MA_0002496
comment: This class was created automatically from a combination of ontologies
synonym: "Hepatic acinus" EXACT []
synonym: "liver acinus" EXACT []
synonym: "Portal acinus" EXACT []
synonym: "portal acinus" EXACT []
xref: FMA:14654
xref: MA:0002496
xref: ncithesaurus:Liver_Acinus
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001171 ! portal lobule
[Term]
id: UBERON:0001173
name: biliary tree
alt_id: UBERON:FMA_14665-XAO_0000455
def: "Hollow tree organ, the organ parts of which consists of the bile ducts. Examples: There is only one biliary tree." [Wikipedia:Biliary_tree]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Biliary tree" EXACT []
xref: FMA:14665
xref: XAO:0000455
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0001174
name: common bile duct
alt_id: UBERON:FMA_14667-MA_0001631
def: "." [Wikipedia:Common_bile_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Common bile duct" EXACT []
synonym: "Ductus choledochus (biliaris)" EXACT []
synonym: "ductus choledochus (biliaris)" EXACT []
xref: EHDAA:3981
xref: FMA:14667
xref: GAID:282
xref: galen:CommonBileDuct
xref: HOG:0000214
xref: MA:0001631
xref: ncithesaurus:Common_Bile_Duct
xref: ZFA:0005165
is_a: UBERON:0002394 ! bile duct
relationship: part_of UBERON:0001173 ! biliary tree
[Term]
id: UBERON:0001175
name: common hepatic duct
alt_id: UBERON:FMA_14668-ZFA_0001100
def: "A duct that carries bile from the liver to the small intestine. Crosnier et al. 2005" [Wikipedia:Intestinal_villus, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Intestinal villus" EXACT []
synonym: "Villus intestinalis (Intestinum tenue)" EXACT []
synonym: "villus intestinalis (intestinum tenue)" EXACT []
xref: FMA:15072
xref: TAO:0005125
xref: ZFA:0005125
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0001277 ! intestinal epithelium
[Term]
id: UBERON:0001214
name: pancreatic tributary of splenic vein
alt_id: UBERON:FMA_15388-MA_0002189
def: "." [Wikipedia:Pancreatic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pancreatic tributary of splenic vein" EXACT []
synonym: "Pancreatic vein" EXACT []
synonym: "pancreatic vein" EXACT []
xref: FMA:15388
xref: MA:0002189
xref: ncithesaurus:Pancreatic_Vein
is_a: UBERON:0002017 ! portal vein
[Term]
id: UBERON:0001215
name: inferior mesenteric vein
alt_id: UBERON:FMA_15391-MA_0002178
def: "." [Wikipedia:Inferior_mesenteric_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Inferior mesenteric vein" EXACT []
xref: BTO:0002782
xref: EHDAA:8712
xref: FMA:15391
xref: HOG:0001118
xref: MA:0002178
xref: ncithesaurus:Inferior_Mesenteric_Vein
xref: OpenCyc:Mx4rvcV53ZwpEbGdrcN5Y29ycA
is_a: UBERON:0002017 ! portal vein
[Term]
id: UBERON:0001216
name: jejunal vein
alt_id: UBERON:FMA_15402-MA_0002153
comment: This class was created automatically from a combination of ontologies
synonym: "Jejunal vein" EXACT []
xref: FMA:15402
xref: MA:0002153
is_a: UBERON:0002017 ! portal vein
relationship: part_of UBERON:0001138 ! superior mesenteric vein
[Term]
id: UBERON:0001217
name: ileal vein
alt_id: UBERON:FMA_15405-MA_0002140
comment: This class was created automatically from a combination of ontologies
synonym: "Ileal vein" EXACT []
xref: FMA:15405
xref: MA:0002140
xref: ncithesaurus:Ileal_Vein
is_a: UBERON:0002017 ! portal vein
relationship: part_of UBERON:0001138 ! superior mesenteric vein
[Term]
id: UBERON:0001218
name: middle colic vein
alt_id: UBERON:FMA_15406-MA_0002181
def: "." [Wikipedia:Middle_colic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Middle colic vein" EXACT []
synonym: "Vena colica media (intermedia)" EXACT []
synonym: "vena colica media (intermedia)" EXACT []
xref: FMA:15406
xref: MA:0002181
is_a: UBERON:0002017 ! portal vein
relationship: part_of UBERON:0001138 ! superior mesenteric vein
[Term]
id: UBERON:0001219
name: ileocolic vein
alt_id: UBERON:FMA_15408-MA_0002141
def: "." [Wikipedia:Ileocolic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ileocolic vein" EXACT []
xref: FMA:15408
xref: MA:0002141
xref: ncithesaurus:Ileocolic_Vein
is_a: UBERON:0002017 ! portal vein
relationship: part_of UBERON:0001138 ! superior mesenteric vein
[Term]
id: UBERON:0001220
name: quadratus lumborum
alt_id: UBERON:FMA_15569-MA_0002362
def: "." [Wikipedia:Quadratus_lumborum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Muscle of posterior abdominal wall" EXACT []
synonym: "muscle of posterior abdominal wall" EXACT []
synonym: "Quadratus lumborum" EXACT []
xref: FMA:15569
xref: MA:0002362
xref: ncithesaurus:Quadratus_Lumborum
is_a: UBERON:0002378 ! muscle of abdomen
[Term]
id: UBERON:0001221
name: transversus abdominis
alt_id: UBERON:FMA_15570-MA_0002396
def: "." [Wikipedia:Transversus_abdominis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Transverse abdominal" EXACT []
synonym: "transverse abdominal" EXACT []
synonym: "Transversus abdominis" EXACT []
xref: EHDAA:8254
xref: FMA:15570
xref: HOG:0000845
xref: MA:0002396
xref: ncithesaurus:Transversus_Abdominis
is_a: UBERON:0002461 ! anterior abdominal wall muscle
[Term]
id: UBERON:0001222
name: right ureter
alt_id: UBERON:FMA_15571-MA_0001685
comment: This class was created automatically from a combination of ontologies
synonym: "Right ureter" EXACT []
xref: FMA:15571
xref: MA:0001685
xref: ncithesaurus:Right_Ureter
is_a: UBERON:0000056 ! ureter
[Term]
id: UBERON:0001223
name: left ureter
alt_id: UBERON:FMA_15572-MA_0001684
comment: This class was created automatically from a combination of ontologies
synonym: "Left ureter" EXACT []
xref: FMA:15572
xref: MA:0001684
xref: ncithesaurus:Left_Ureter
is_a: UBERON:0000056 ! ureter
[Term]
id: UBERON:0001224
name: renal pelvis
alt_id: UBERON:FMA_15575-MA_0000374
def: "funnel-like dilated proximal part of the ureter in the kidney." [Wikipedia:Renal_pelvis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "kidney pelvis" EXACT []
synonym: "Pelvis of ureter" EXACT []
synonym: "pelvis of ureter" EXACT []
synonym: "Renal pelvis" EXACT []
xref: FMA:15575
xref: GAID:426
xref: MA:0000374
xref: ncithesaurus:Renal_Pelvis
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001225
name: cortex of kidney
alt_id: UBERON:FMA_15581-MA_0000372
def: "Region of parenchyma of kidney representing the outer portion." [Wikipedia:Kidney_cortex]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cortex of kidney" EXACT []
synonym: "kidney cortex" EXACT []
synonym: "Renal cortex" EXACT []
synonym: "renal cortex" RELATED []
xref: BTO:0001166
xref: FMA:15581
xref: GAID:424
xref: galen:CortexOfKidney
xref: MA:0000372
xref: ncithesaurus:Renal_Cortex
is_a: UBERON:0001851 ! cortex
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0002113 ! kidney
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001226
name: major calyx
alt_id: UBERON:FMA_15613-MA_0001644
def: "." [Wikipedia:Major_calyx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Major calix" EXACT []
synonym: "major calix" EXACT []
synonym: "Major calyx" EXACT []
xref: FMA:15613
xref: MA:0001644
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001224 ! renal pelvis
[Term]
id: UBERON:0001227
name: minor calyx
alt_id: UBERON:FMA_15614-MA_0001645
def: "." [Wikipedia:Minor_calyx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Minor calix" EXACT []
synonym: "minor calix" EXACT []
synonym: "Minor calyx" EXACT []
xref: FMA:15614
xref: MA:0001645
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001224 ! renal pelvis
[Term]
id: UBERON:0001228
name: renal papilla
alt_id: UBERON:FMA_15622-MA_0002730
def: "." [Wikipedia:Renal_papilla]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Renal papilla" EXACT []
xref: BTO:0003925
xref: FMA:15622
xref: MA:0002730
xref: ncithesaurus:Renal_Papilla
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001224 ! renal pelvis
relationship: part_of UBERON:0001294 ! inner medulla of kidney
[Term]
id: UBERON:0001229
name: renal corpuscle
alt_id: UBERON:FMA_15625-MA_0000376
def: "." [Wikipedia:Renal_corpuscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Corpusculum renale" EXACT []
synonym: "corpusculum renale" EXACT []
synonym: "cortical renal corpuscle" RELATED []
synonym: "malphighian corpuscle" RELATED []
synonym: "Malphigian corpuscle" EXACT []
synonym: "malphigian corpuscle" EXACT []
synonym: "Renal corpuscle" EXACT []
xref: BTO:0000333
xref: FMA:15625
xref: HOG:0001262
xref: MA:0000376
xref: ncithesaurus:Renal_Corpuscle
xref: ZFA:0005281
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0001230
name: glomerular capsule
alt_id: UBERON:FMA_15626-MA_0001660
def: "." [Wikipedia:Glomerular_capsule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bowman's capsule" EXACT []
synonym: "bowman's capsule" RELATED []
synonym: "Glomerular capsule" EXACT []
xref: FMA:15626
xref: MA:0001660
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001229 ! renal corpuscle
[Term]
id: UBERON:0001231
name: renal tubule
alt_id: UBERON:FMA_15627-ZFA_0001287
def: "." [Wikipedia:Renal_tubule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Renal tubule" EXACT []
synonym: "renal tubules" RELATED []
synonym: "Tubulus renalis" EXACT []
synonym: "tubulus renalis" EXACT []
xref: BTO:0000343
xref: FMA:15627
xref: MA:0000377
xref: ncithesaurus:Renal_Tubule
xref: TAO:0001287
xref: ZFA:0001287
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001285 ! nephron
[Term]
id: UBERON:0001232
name: collecting duct of renal tubule
alt_id: UBERON:FMA_15628-MA_0000371
def: "." [Wikipedia:Renal_collecting_tubule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Collecting duct of renal tubule" EXACT []
synonym: "collecting tubule" RELATED []
synonym: "kidney collecting duct" EXACT []
synonym: "Renal collecting tubule" EXACT []
synonym: "renal collecting tubule" EXACT []
synonym: "Tubulus renalis colligens" EXACT []
synonym: "tubulus renalis colligens" EXACT []
xref: FMA:15628
xref: MA:0000371
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001233
name: right adrenal gland
alt_id: UBERON:FMA_15629-MA_0000719
comment: This class was created automatically from a combination of ontologies
synonym: "Right adrenal gland" EXACT []
synonym: "Right suprarenal gland" EXACT []
synonym: "right suprarenal gland" EXACT []
xref: FMA:15629
xref: MA:0000719
xref: ncithesaurus:Right_Adrenal_Gland
is_a: UBERON:0002369 ! adrenal gland
[Term]
id: UBERON:0001234
name: left adrenal gland
alt_id: UBERON:FMA_15630-MA_0000718
comment: This class was created automatically from a combination of ontologies
synonym: "Left adrenal gland" EXACT []
synonym: "Left suprarenal gland" EXACT []
synonym: "left suprarenal gland" EXACT []
xref: FMA:15630
xref: MA:0000718
xref: ncithesaurus:Left_Adrenal_Gland
is_a: UBERON:0002369 ! adrenal gland
[Term]
id: UBERON:0001235
name: adrenal cortex
alt_id: UBERON:FMA_15632-MA_0000118-XAO_0000165
def: "." [Wikipedia:Adrenal_cortex]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Adrenal cortex" EXACT []
synonym: "adrenal gland cortex" EXACT []
synonym: "Cortex (Glandula suprarenalis)" EXACT []
synonym: "cortex (glandula suprarenalis)" EXACT []
synonym: "Cortex of adrenal gland" EXACT []
synonym: "cortex of adrenal gland" EXACT []
synonym: "Cortex of suprarenal gland" EXACT []
synonym: "cortex of suprarenal gland" EXACT []
synonym: "interrenal tissue" RELATED []
synonym: "Suprarenal cortex" EXACT []
synonym: "suprarenal cortex" EXACT []
xref: BTO:0000045
xref: EFO:0000237
xref: FMA:15632
xref: GAID:447
xref: HOG:0001481
xref: MA:0000118
xref: MAT:0000494
xref: ncithesaurus:Adrenal_Cortex
xref: XAO:0000165
is_a: UBERON:0001851 ! cortex
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0002369 ! adrenal gland
relationship: part_of UBERON:0002369 ! adrenal gland
[Term]
id: UBERON:0001236
name: adrenal medulla
alt_id: UBERON:FMA_15633-MA_0000119-XAO_0000166
def: "." [Wikipedia:Adrenal_medulla]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adrenal gland medulla" EXACT []
synonym: "Adrenal medulla" EXACT []
synonym: "chromaffin cells" RELATED []
synonym: "Medulla (Glandula suprarenalis)" EXACT []
synonym: "medulla (glandula suprarenalis)" EXACT []
synonym: "Medulla of suprarenal gland" EXACT []
synonym: "medulla of suprarenal gland" EXACT []
synonym: "Suprarenal medulla" EXACT []
synonym: "suprarenal medulla" EXACT []
xref: BTO:0000049
xref: EFO:0000852
xref: FMA:15633
xref: GAID:451
xref: HOG:0001378
xref: MA:0000119
xref: MAT:0000495
xref: ncithesaurus:Adrenal_Medulla
xref: XAO:0000166
is_a: UBERON:0000958 ! medulla
intersection_of: UBERON:0000958 ! medulla
intersection_of: part_of UBERON:0002369 ! adrenal gland
relationship: part_of UBERON:0002369 ! adrenal gland
[Term]
id: UBERON:0001237
name: paraaortic body
alt_id: UBERON:FMA_15647-MA_0001137
def: "." [Wikipedia:Organ_of_Zuckerkandl]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Organ of Zuckerkandl" EXACT []
synonym: "organ of zuckerkandl" EXACT []
synonym: "Para-aortic body" EXACT []
synonym: "para-aortic body" RELATED []
synonym: "Paraaortic body" EXACT []
synonym: "paraganglia of zuckerkandl" RELATED []
xref: FMA:15647
xref: GAID:444
xref: MA:0001137
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0001238
name: lamina propria of small intestine
alt_id: UBERON:FMA_15651-MA_0001554
def: "Lamina propria that is part_of the small intestine." [GOC:Obol]
synonym: "Lamina propria mucosae of small intestine" EXACT []
synonym: "lamina propria mucosae of small intestine" EXACT []
synonym: "Lamina propria of mucosa of small intestine" EXACT []
synonym: "lamina propria of mucosa of small intestine" EXACT []
synonym: "Lamina propria of small intestine" EXACT []
synonym: "Small intestine lamina propria" EXACT []
synonym: "small intestine lamina propria" EXACT []
xref: FMA:15651
xref: MA:0001554
xref: ncithesaurus:Small_Intestinal_Lamina_Propria
is_a: UBERON:0000030 ! lamina propria
is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001204 ! mucosa of small intestine
[Term]
id: UBERON:0001239
name: muscularis mucosae of large intestine
alt_id: UBERON:FMA_15655-MA_0002689
comment: This class was created automatically from a combination of ontologies
synonym: "Lamina muscularis of large intestine mucosa" EXACT []
synonym: "lamina muscularis of large intestine mucosa" EXACT []
synonym: "Lamina muscularis of large intestine mucous membrane" EXACT []
synonym: "lamina muscularis of large intestine mucous membrane" EXACT []
synonym: "large intestine muscularis mucosa" EXACT []
synonym: "Muscularis mucosae of large intestine" EXACT []
xref: FMA:15655
xref: MA:0002689
xref: ncithesaurus:Large_Intestinal_Muscularis_Mucosa
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: part_of UBERON:0001207 ! mucosa of large intestine
relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine
[Term]
id: UBERON:0001240
name: muscularis mucosae of intestine
alt_id: UBERON:FMA_15691-MA_0002694
comment: This class was created automatically from a combination of ontologies
synonym: "intestine muscularis mucosa" EXACT []
synonym: "Muscularis mucosae of intestine" EXACT []
xref: FMA:15691
xref: MA:0002694
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001242 ! intestinal mucosa
[Term]
id: UBERON:0001241
name: crypt of lieberkuhn of small intestine
alt_id: UBERON:FMA_15693-MA_0001552
comment: This class was created automatically from a combination of ontologies
synonym: "Crypt of Lieberkuhn of small intestine" EXACT []
synonym: "Small intestinal crypt of Lieberkuhn" EXACT []
synonym: "small intestinal crypt of lieberkuhn" EXACT []
synonym: "small intestine crypt of lieberkuhn" EXACT []
xref: FMA:15693
xref: MA:0001552
xref: ncithesaurus:Small_Intestinal_Crypt_of_Lieberkuhn
is_a: UBERON:0001983 ! crypt of lieberkuhn
intersection_of: UBERON:0001983 ! crypt of lieberkuhn
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0001242
name: intestinal mucosa
alt_id: UBERON:FMA_15695-MA_0001537
def: "." [Wikipedia:Intestinal_mucosa]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Intestinal mucosa" EXACT []
synonym: "intestine mucosa" EXACT []
synonym: "Mucosa of intestine" EXACT []
synonym: "mucosa of intestine" EXACT []
xref: BTO:0000642
xref: FMA:15695
xref: GAID:296
xref: MA:0001537
xref: ncithesaurus:Intestinal_Mucosa
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
is_a: UBERON:0000477 ! anatomical cluster
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001262 ! wall of intestine
[Term]
id: UBERON:0001243
name: serosa of intestine
alt_id: UBERON:FMA_15701-MA_0001538
comment: TODO - check serosa/peritoneum
synonym: "Intestinal serosa" EXACT []
synonym: "intestinal serosa" EXACT []
synonym: "intestine serosa" EXACT []
synonym: "Serosa of intestine" EXACT []
synonym: "Visceral peritoneum of intestine" EXACT []
synonym: "visceral peritoneum of intestine" EXACT []
xref: FMA:15701
xref: MA:0001538
is_a: UBERON:0000042 ! serous membrane
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001262 ! wall of intestine
relationship: part_of UBERON:0001262 ! wall of intestine
[Term]
id: UBERON:0001244
name: internal anal sphincter
alt_id: UBERON:FMA_15710-MA_0001534
def: "." [Wikipedia:Internal_anal_sphincter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Circular layer of anal muscularis externa" EXACT []
synonym: "circular layer of anal muscularis externa" EXACT []
synonym: "Circular layer of muscularis externa of anal canal" EXACT []
synonym: "circular layer of muscularis externa of anal canal" EXACT []
synonym: "Circular layer of muscularis propria of anal canal" EXACT []
synonym: "circular layer of muscularis propria of anal canal" EXACT []
synonym: "Circular muscle layer of anal canal" EXACT []
synonym: "circular muscle layer of anal canal" EXACT []
synonym: "Internal anal sphincter" EXACT []
xref: FMA:15710
xref: MA:0001534
xref: ncithesaurus:Internal_Anal_Sphincter
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001353 ! anal part of perineum
[Term]
id: UBERON:0001245
name: anus
alt_id: UBERON:FMA_15711-MA_0000331-ZFA_0000066
def: "Orifice at the opposite end of an animal's digestive tract from the mouth. Its function is to expel feces, unwanted semi-solid matter produced during digestion, which, depending on the type of animal, may be one or more of: matter which the animal cannot digest, such as bones; food material after all the nutrients have been extracted, for example cellulose or lignin; ingested matter which would be toxic if it remained in the digestive tract; and dead or excess gut bacteria and other endosymbionts." [Wikipedia:Anus, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anal orifice" EXACT []
synonym: "anal orifice" EXACT []
synonym: "Anus" EXACT []
synonym: "proctodeum" EXACT []
xref: BTO:0001680
xref: FMA:15711
xref: GAID:312
xref: galen:Anus
xref: HOG:0000139
xref: MA:0000331
xref: ncithesaurus:Proctodeum
xref: OpenCyc:Mx4rvVjaEZwpEbGdrcN5Y29ycA
xref: TAO:0000066
xref: WBbt:0005364
xref: ZFA:0000066
is_a: UBERON:0000161 ! orifice
relationship: develops_from UBERON:0000100 ! blastopore
relationship: part_of UBERON:0001353 ! anal part of perineum
relationship: part_of UBERON:0001555 ! gut
[Term]
id: UBERON:0001246
name: interlobular bile duct
alt_id: UBERON:FMA_15767-MA_0002668
comment: This class was created automatically from a combination of ontologies
synonym: "Interlobular bile duct" EXACT []
xref: FMA:15767
xref: MA:0002668
xref: ncithesaurus:Interlobular_Bile_Duct
is_a: UBERON:0002394 ! bile duct
relationship: part_of UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001279 ! portal triad
[Term]
id: UBERON:0001247
name: falciform ligament
alt_id: UBERON:FMA_15823-MA_0001622
def: "." [Wikipedia:Falciform_ligament]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Falciform ligament" EXACT []
synonym: "Falciform ligament of liver" EXACT []
synonym: "falciform ligament of liver" EXACT []
synonym: "Ligamentum falciforme (Hepatis)" EXACT []
synonym: "ligamentum falciforme (hepatis)" EXACT []
xref: EHDAA:4856
xref: FMA:15823
xref: HOG:0000355
xref: MA:0001622
xref: ncithesaurus:Falciform_Ligament
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0002095 ! mesentery
is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue
is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue
[Term]
id: UBERON:0001248
name: hilum of spleen
alt_id: UBERON:FMA_15841-MA_0002670
def: "." [Wikipedia:Splenic_hilum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hilum of spleen" EXACT []
synonym: "spleen hilum" EXACT []
synonym: "Splenic hilum" EXACT []
synonym: "splenic hilum" EXACT []
xref: FMA:15841
xref: MA:0002670
xref: ncithesaurus:Splenic_Hilum
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0001249
name: lymphoid nodule of spleen
alt_id: UBERON:FMA_15843-MA_0002672
def: "A lymphoid nodule that is part_of a spleen" [GOC:Obol]
synonym: "Lymphatic follicle of spleen" EXACT []
synonym: "lymphatic follicle of spleen" EXACT []
synonym: "Lymphoid follicle of spleen" EXACT []
synonym: "lymphoid follicle of spleen" EXACT []
synonym: "Lymphoid nodule of spleen" EXACT []
synonym: "Malpighian body" EXACT []
synonym: "malpighian body" EXACT []
synonym: "spleen lymphoid follicle" EXACT []
synonym: "spleen lymphoid nodule" RELATED []
synonym: "Splenic lymphatic follicle" EXACT []
synonym: "splenic lymphatic follicle" EXACT []
xref: FMA:15843
xref: MA:0002672
is_a: UBERON:0000444 ! implied link automatically realized ! lymphoid follicle
is_a: UBERON:0001744 ! lymphoid tissue
intersection_of: UBERON:0000444 ! lymphoid follicle
intersection_of: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0001959 ! white pulp of spleen
[Term]
id: UBERON:0001250
name: red pulp of spleen
alt_id: UBERON:FMA_15844-MA_0000756
def: "Red pulp of the spleen is composed of connective tissue known as the cords of Billroth and many splenic sinuses that are engorged with blood, giving it a red color. Its primary function is to filter the blood of antigens, microorganisms, and defective or worn-out red blood cells. The spleen is made of red pulp and white pulp, separated by the marginal zone; 76-79% of a normal spleen is red pulp. Unlike white pulp, which mainly contains lymphocytes such as T cells, red pulp is made up of several different types of blood cells, including platelets, granulocytes, red blood cells, and plasma." [Wikipedia:Red_pulp]
subset: uberon_slim
synonym: "red pulp" EXACT []
synonym: "Red pulp of spleen" EXACT []
synonym: "spleen red pulp" EXACT []
synonym: "Splenic red pulp" EXACT []
synonym: "splenic red pulp" EXACT []
xref: FMA:15844
xref: MA:0000756
xref: ncithesaurus:Splenic_Red_Pulp
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0001251
name: marginal zone of spleen
alt_id: UBERON:FMA_15852-MA_0000755
def: "region at the interface between the non-lymphoid red pulp and the lymphoid white-pulp of the spleen." [Wikipedia:Marginal_zone]
comment: WP says - (Some sources consider it to be the part of red pulp which borders on the white pulp, while other sources consider it to be neither red pulp nor white pulp.) - we use the adjacency relation here so it overlaps neither. FMA considers this an anatomical line
synonym: "Junctional zone of spleen" EXACT []
synonym: "junctional zone of spleen" EXACT []
synonym: "marginal zone" BROAD [Wikipedia:Marginal_zone]
synonym: "Marginal zone of spleen" EXACT []
synonym: "spleen marginal zone" EXACT []
xref: FMA:15852
xref: MA:0000755
is_a: UBERON:0000061 ! anatomical structure
relationship: adjacent_to UBERON:0001250 ! red pulp of spleen
relationship: adjacent_to UBERON:0001959 ! white pulp of spleen
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0001252
name: adventitia of ureter
alt_id: UBERON:FMA_15892-MA_0002652
comment: This class was created automatically from a combination of ontologies
synonym: "Adventitia of ureter" EXACT []
synonym: "External adventitia of ureter" EXACT []
synonym: "external adventitia of ureter" EXACT []
synonym: "ureter adventitia" EXACT []
synonym: "Ureteral adventitia" EXACT []
synonym: "ureteral adventitia" EXACT []
xref: FMA:15892
xref: MA:0002652
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0001253
name: lamina propria of ureter
alt_id: UBERON:FMA_15896-MA_0002653
comment: This class was created automatically from a combination of ontologies
synonym: "Lamina propria of ureter" EXACT []
synonym: "ureter lamina propria" EXACT []
xref: FMA:15896
xref: MA:0002653
is_a: UBERON:0000030 ! lamina propria
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0000056 ! ureter
relationship: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0001254
name: transitional epithelium of ureter
alt_id: UBERON:FMA_15897-MA_0002655
comment: This class was created automatically from a combination of ontologies
synonym: "Transitional epithelium of ureter" EXACT []
synonym: "ureter transitional epithelium" RELATED []
synonym: "ureter urothelium" EXACT []
synonym: "Urothelium of ureter" EXACT []
synonym: "urothelium of ureter" EXACT []
xref: FMA:15897
xref: MA:0002655
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0001255
name: urinary bladder
alt_id: UBERON:FMA_15900-FMA_7203-MA_0000368-MA_0000380-MIAA_0000118-MIAA_0000119-MIAA_0000122-WBbt_0005775-XAO_0000154-ZFA_0000529
def: "Organ with organ cavity which is continuous proximally with the right and left ureters and distally with the urethra. Examples: There is only one urinary bladder. // Four processes (canals) of the excretory canal cell each contain a central collecting lumen which feeds to a central lumenal canal in the cell body; the central canal forms a specialized membrane to release fluids into the excretory duct. These five canals form a continuous H-shaped channel which extends almost the full length of the body, generally in contact with the lateral hypodermis and the pseudocoelom." [WA:dh, Wikipedia:Urinary_bladder]
comment: This class was created automatically from a combination of ontologies. TODO: split
subset: uberon_slim
synonym: "Bladder" EXACT []
synonym: "bladder" EXACT []
synonym: "excretory canal" BROAD []
synonym: "Urinary bladder" EXACT []
xref: AAO:0000623
xref: BTO:0000123
xref: EFO:0000290
xref: EHDAA:9328
xref: FMA:15900
xref: GAID:0000004
xref: HOG:0000740
xref: MA:0000380
xref: MAT:0000122
xref: MIAA:0000122
xref: ncithesaurus:Bladder
xref: OpenCyc:Mx4rvVjMmZwpEbGdrcN5Y29ycA
xref: XAO:0000154
is_a: UBERON:0000489 ! cavitated compound organ
is_a: UBERON:0002075 ! viscus
relationship: develops_from UBERON:0000164 ! urogenital sinus
relationship: part_of UBERON:0001556 ! lower urinary tract
relationship: part_of UBERON:0002323 ! body cavity
relationship: part_of UBERON:0002355 ! pelvis
relationship: part_of UBERON:0002405 ! immune system
[Term]
id: UBERON:0001256
name: wall of urinary bladder
alt_id: UBERON:FMA_15902-MA_0002493
comment: This class was created automatically from a combination of ontologies
synonym: "Urinary bladder wall" EXACT []
synonym: "urinary bladder wall" EXACT []
synonym: "Wall of urinary bladder" EXACT []
xref: FMA:15902
xref: MA:0002493
is_a: UBERON:0000060 ! anatomical wall
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0001257
name: trigone of urinary bladder
alt_id: UBERON:FMA_15910-MA_0002492
def: "." [Wikipedia:Trigone_of_urinary_bladder]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Deep trigone" EXACT []
synonym: "deep trigone" EXACT []
synonym: "Lieutaud's trigone" EXACT []
synonym: "lieutaud's trigone" EXACT []
synonym: "Trigone of bladder" EXACT []
synonym: "trigone of bladder" EXACT []
synonym: "Trigone of urinary bladder" EXACT []
synonym: "Urinary bladder trigone" EXACT []
synonym: "urinary bladder trigone" EXACT []
synonym: "Vesical trigone" EXACT []
synonym: "vesical trigone" EXACT []
xref: FMA:15910
xref: MA:0002492
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0001258
name: neck of urinary bladder
alt_id: UBERON:FMA_15912-MA_0002491
def: "." [Wikipedia:Neck_of_urinary_bladder]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bladder neck" EXACT []
synonym: "bladder neck" EXACT []
synonym: "Neck of bladder" EXACT []
synonym: "neck of bladder" EXACT []
synonym: "Neck of urinary bladder" EXACT []
synonym: "Urinary bladder neck" EXACT []
synonym: "urinary bladder neck" EXACT []
synonym: "Vesical neck" EXACT []
synonym: "vesical neck" EXACT []
xref: FMA:15912
xref: MA:0002491
xref: ncithesaurus:Bladder_Neck
is_a: UBERON:0001560 ! neck of organ
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0001259
name: mucosa of urinary bladder
alt_id: UBERON:FMA_15928-MA_0001692
comment: This class was created automatically from a combination of ontologies
synonym: "Bladder mucosa" EXACT []
synonym: "bladder mucosa" EXACT []
synonym: "Mucosa of urinary bladder" EXACT []
synonym: "Mucous membrane of bladder" EXACT []
synonym: "mucous membrane of bladder" EXACT []
synonym: "Mucous membrane of urinary bladder" EXACT []
synonym: "mucous membrane of urinary bladder" EXACT []
synonym: "Urinary bladder mucosa" EXACT []
synonym: "urinary bladder mucosa" EXACT []
xref: EFO:0000293
xref: FMA:15928
xref: MA:0001692
xref: ncithesaurus:Bladder_Mucosa
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001256 ! wall of urinary bladder
[Term]
id: UBERON:0001260
name: serosa of urinary bladder
alt_id: UBERON:FMA_15932-MA_0001696
comment: TODO - check serosa/peritoneum
synonym: "Bladder serosa" EXACT []
synonym: "bladder serosa" EXACT []
synonym: "Serosa of bladder" EXACT []
synonym: "serosa of bladder" EXACT []
synonym: "Serosa of urinary bladder" EXACT []
synonym: "Serous coat of bladder" EXACT []
synonym: "serous coat of bladder" EXACT []
synonym: "Serous coat of urinary bladder" EXACT []
synonym: "serous coat of urinary bladder" EXACT []
synonym: "Urinary bladder serosa" EXACT []
synonym: "urinary bladder serosa" EXACT []
synonym: "Visceral peritoneum of urinary bladder" EXACT []
synonym: "visceral peritoneum of urinary bladder" EXACT []
xref: FMA:15932
xref: MA:0001696
is_a: UBERON:0000042 ! serous membrane
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0001261
name: lamina propria of urinary bladder
alt_id: UBERON:FMA_15935-MA_0001695
comment: This class was created automatically from a combination of ontologies
synonym: "Lamina propria of urinary bladder" EXACT []
synonym: "urinary bladder lamina propria" EXACT []
xref: FMA:15935
xref: MA:0001695
is_a: UBERON:0000030 ! lamina propria
is_a: UBERON:0003594 ! implied link automatically realized ! pelvis connective tissue
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0001255 ! urinary bladder
relationship: part_of UBERON:0001259 ! mucosa of urinary bladder
[Term]
id: UBERON:0001262
name: wall of intestine
alt_id: UBERON:FMA_15949-MA_0002693
comment: This class was created automatically from a combination of ontologies
synonym: "Intestinal wall" EXACT []
synonym: "intestinal wall" EXACT []
synonym: "intestine wall" EXACT []
synonym: "Wall of intestine" EXACT []
xref: BTO:0000647
xref: FMA:15949
xref: MA:0002693
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0003697 ! implied link automatically realized ! abdominal wall
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0000160 ! intestine
[Term]
id: UBERON:0001263
name: pancreatic acinus
alt_id: UBERON:FMA_16011-MA_0002417
comment: This class was created automatically from a combination of ontologies
synonym: "Acinus pancreaticus" EXACT []
synonym: "acinus pancreaticus" EXACT []
synonym: "Pancreatic acinus" EXACT []
xref: FMA:16011
xref: MA:0002417
xref: ncithesaurus:Pancreatic_Acinus
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0001264
name: pancreas
alt_id: UBERON:FMA_16017-FMA_16018-FMA_7198-MA_0000120-MA_0001582-MA_0002415-MIAA_0000075-XAO_0000136-XAO_0000137-ZFA_0000140-ZFA_0001249-ZFA_0001260
def: "Lobular organ the parenchyma of which consists of glandular acini which communicate via a duct system with the duodenum. Examples: There is only one pancreas. // Internal gland organ with distinct tissues with different endocrine and exocrine functions. Its rudiment has three parts, one dorsal and two ventral primordia. The ventral can be first detected at NF stage 37/38. The dorsal is clearly segregated from the duodenal wall by NF stage 39. At NF stage 40 the right and left primordia have fused just above the gasto-duodenal vein. At NF stage 42 blood vessels penetrate into the crevices between the pancreatic acini making them more conspicuous. // Pancreatic tissue composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion." [ISBN:0815318960, ISBN:0881679860, Wikipedia:Pancreas, ZFA:0001249, ZFIN:curator]
subset: uberon_slim
synonym: "Pancreas" EXACT []
xref: BTO:0000988
xref: EFO:0000855
xref: EHDAA:6893
xref: FMA:7198
xref: GAID:334
xref: HOG:0000050
xref: MA:0000120
xref: MAT:0000075
xref: MIAA:0000075
xref: ncithesaurus:Pancreas
xref: OpenCyc:Mx4rvVimZZwpEbGdrcN5Y29ycA
xref: TAO:0000140
xref: XAO:0000136
xref: ZFA:0000140
is_a: UBERON:0002075 ! viscus
relationship: develops_from UBERON:0000925 ! endoderm
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0001265
name: trabecula of spleen
alt_id: UBERON:FMA_16027-MA_0000758
comment: This class was created automatically from a combination of ontologies
synonym: "spleen trabeculum" EXACT []
synonym: "Splenic trabecula" EXACT []
synonym: "splenic trabecula" EXACT []
synonym: "Trabecula of spleen" EXACT []
xref: FMA:16027
xref: MA:0000758
xref: ncithesaurus:Splenic_Trabecula
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0001266
name: splenic cord
alt_id: UBERON:FMA_16031-MA_0002671
comment: This class was created automatically from a combination of ontologies
synonym: "Cord of Bilroth" EXACT []
synonym: "cord of bilroth" EXACT []
synonym: "Splenic cord" EXACT []
xref: FMA:16031
xref: MA:0002671
xref: ncithesaurus:Splenic_Cord
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001250 ! red pulp of spleen
[Term]
id: UBERON:0001267
name: femoral nerve
alt_id: UBERON:FMA_16486-MA_0001167
def: "." [Wikipedia:Femoral_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anterior crural nerve" EXACT []
synonym: "anterior crural nerve" EXACT []
synonym: "Femoral nerve" EXACT []
xref: EHDAA:5655
xref: FMA:16486
xref: GAID:850
xref: HOG:0001411
xref: MA:0001167
xref: ncithesaurus:Femoral_Nerve
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001268
name: peritoneal fluid
alt_id: UBERON:FMA_16515-MA_0002531
def: "Transudate contained in the peritoneal cavity." [Wikipedia:Peritoneal_fluid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Peritoneal fluid" EXACT []
xref: BTO:0001031
xref: FMA:16515
xref: MA:0002531
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001179 ! peritoneal cavity
[Term]
id: UBERON:0001269
name: acetabular part of hip bone
alt_id: UBERON:FMA_16579-MA_0001335
def: "." [Wikipedia:Acetabulum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Acetabular part of hip bone" EXACT []
synonym: "acetabulum" EXACT []
xref: AAO:0000770
xref: FMA:16579
xref: GAID:206
xref: MA:0001335
xref: ncithesaurus:Acetabulum
is_a: UBERON:0001271 ! pelvic girdle
relationship: part_of UBERON:0001486 ! hip joint
[Term]
id: UBERON:0001270
name: bony pelvis
alt_id: UBERON:FMA_16580-MA_0000532
comment: This class was created automatically from a combination of ontologies
synonym: "Bony pelvis" EXACT []
synonym: "pelvis bone" EXACT []
xref: FMA:16580
xref: MA:0000532
is_obsolete: true
[Term]
id: UBERON:0001271
name: pelvic girdle
alt_id: UBERON:FMA_16581-MA_0000293-MIAA_0000182-XAO_0003064-ZFA_0000565
def: "Subdivision of free lower limb, which is the proximal segment of a lower limb and links the free lower limb to the trunk; it is demarcated by the plane of the surface of the acetabular fossa from the free lower limb; together with the free lower limb, it constitutes the lower limb. Examples: There are only two instances, right and left pelvic girdles. // Arched skeletal structure that supports the hind limbs, begins to develop at NF stage 50, and is ossified by NF stage 66." [ISBN:0471209627, NLM:pelvic+girdle, Wikipedia:Pelvic_girdle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "girdle - pelvic" EXACT []
synonym: "Pelvic girdle" EXACT []
synonym: "pelvic girdle bone" EXACT []
xref: AAO:0000426
xref: EFO:0000947
xref: EHDAA:7149
xref: EHDAA:8324
xref: FMA:16581
xref: HOG:0000305
xref: MA:0000293
xref: MAT:0000182
xref: MIAA:0000182
xref: ncithesaurus:Pelvic_Girdle
xref: TAO:0000565
xref: XAO:0003064
xref: ZFA:0000565
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001272
name: hip bone
alt_id: UBERON:FMA_16585-ZFA_0000623
def: "." [Wikipedia:Hip_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "basipterygium" EXACT []
synonym: "Bone of pelvic girdle" EXACT []
synonym: "bone of pelvic girdle" EXACT []
synonym: "Coxal bone" EXACT []
synonym: "coxal bone" EXACT []
synonym: "Hip bone" EXACT []
synonym: "Innominate bone" EXACT []
synonym: "innominate bone" EXACT []
synonym: "Pelvic bone" EXACT []
synonym: "pelvic bone" RELATED []
xref: FMA:16585
xref: GAID:205
xref: MA:0000655
xref: ncithesaurus:Pelvic_Bone
xref: OpenCyc:Mx4rvVjcrZwpEbGdrcN5Y29ycA
xref: TAO:0000623
xref: ZFA:0000623
is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001464 ! hip
relationship: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0001273
name: ilium
alt_id: UBERON:FMA_16589-MA_0001336
def: "." [Wikipedia:Ilium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ilium" EXACT []
synonym: "Os iliacum" EXACT []
synonym: "os iliacum" EXACT []
synonym: "Os ilii" EXACT []
synonym: "os ilii" EXACT []
xref: AAO:0000772
xref: FMA:16589
xref: GAID:207
xref: galen:Ilium
xref: MA:0001336
xref: ncithesaurus:Ilium
is_a: UBERON:0001271 ! pelvic girdle
relationship: part_of UBERON:0001272 ! hip bone
[Term]
id: UBERON:0001274
name: ischium
alt_id: UBERON:FMA_16592-MA_0001337
def: "." [Wikipedia:Ischium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ischium" EXACT []
xref: AAO:0000860
xref: FMA:16592
xref: GAID:208
xref: galen:Ischium
xref: MA:0001337
xref: ncithesaurus:Ischium
is_a: UBERON:0001271 ! pelvic girdle
[Term]
id: UBERON:0001275
name: pubis
alt_id: UBERON:FMA_16595-MA_0001338
def: "." [Wikipedia:Pubis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pubis" EXACT []
xref: AAO:0000861
xref: FMA:16595
xref: MA:0001338
is_a: UBERON:0001271 ! pelvic girdle
relationship: part_of UBERON:0001272 ! hip bone
[Term]
id: UBERON:0001276
name: epithelium of stomach
alt_id: UBERON:FMA_17091-MA_0001610
comment: This class was created automatically from a combination of ontologies
synonym: "Epithelium of stomach" EXACT []
synonym: "Gastric epithelium" EXACT []
synonym: "gastric epithelium" RELATED []
synonym: "stomach epithelium" EXACT []
xref: BTO:0000500
xref: FMA:17091
xref: HOG:0001433
xref: MA:0001610
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000945 ! stomach
relationship: part_of UBERON:0001199 ! mucosa of stomach
[Term]
id: UBERON:0001277
name: intestinal epithelium
alt_id: UBERON:FMA_17229-ZFA_0005124
def: "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. Crosnier et al. 2005" [Wikipedia:Intestinal_epithelium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Intestinal epithelium" EXACT []
synonym: "intestine epithelium" RELATED []
xref: BTO:0000781
xref: FMA:17229
xref: MA:0001536
xref: ncithesaurus:Intestinal_Epithelium
xref: TAO:0005124
xref: ZFA:0005124
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000160 ! intestine
relationship: part_of UBERON:0001242 ! intestinal mucosa
[Term]
id: UBERON:0001278
name: epithelium of large intestine
alt_id: UBERON:FMA_17301-MA_0001545
comment: This class was created automatically from a combination of ontologies
synonym: "Epithelium of large intestine" EXACT []
synonym: "Large intestinal epithelium" EXACT []
synonym: "large intestinal epithelium" EXACT []
synonym: "large intestine epithelium" EXACT []
xref: FMA:17301
xref: MA:0001545
is_a: UBERON:0001277 ! intestinal epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001207 ! mucosa of large intestine
[Term]
id: UBERON:0001279
name: portal triad
alt_id: UBERON:FMA_17523-MA_0002499
def: "." [Wikipedia:Portal_triad]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Portal triad" EXACT []
synonym: "Trias hepatica" EXACT []
synonym: "trias hepatica" EXACT []
xref: FMA:17523
xref: MA:0002499
xref: ncithesaurus:Portal_Triad
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001172 ! hepatic acinus
[Term]
id: UBERON:0001280
name: liver parenchyma
alt_id: UBERON:0003223
alt_id: UBERON:FMA_17540-MA_0000366
comment: This class was created automatically from a combination of ontologies
synonym: "Hepatic parenchyma" EXACT []
synonym: "hepatic parenchyma" RELATED []
synonym: "Liver parenchyma" EXACT []
synonym: "Parenchyma of liver" EXACT []
synonym: "parenchyma of liver" EXACT []
xref: EHDAA:2201
xref: FMA:17540
xref: HOG:0000539
xref: MA:0000366
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0002107 ! liver
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0001281
name: hepatic sinusoid
alt_id: UBERON:0003275
alt_id: UBERON:FMA_17543-MA_0000367-ZFA_0005091
def: "Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [Wikipedia:Hepatic_sinusoid, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hepatic sinusoid" EXACT []
synonym: "hepatic sinusoids" RELATED []
synonym: "liver sinusoid" EXACT []
synonym: "Vas capillare sinusoideum" EXACT []
synonym: "vas capillare sinusoideum" EXACT []
xref: EHDAA:2199
xref: EHDAA:3997
xref: EHDAA:4003
xref: EHDAA:6992
xref: EHDAA:8084
xref: FMA:17543
xref: HOG:0000708
xref: MA:0000367
xref: ncithesaurus:Hepatic_Sinusoid
xref: TAO:0005091
xref: ZFA:0005091
is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
is_a: UBERON:0003909 ! sinusoid
intersection_of: UBERON:0003909 ! sinusoid
intersection_of: part_of UBERON:0002107 ! liver
relationship: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0001282
name: intralobular bile duct
alt_id: UBERON:FMA_17545-MA_0002669
def: "." [Wikipedia:Cholangiole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "canal of hering" RELATED []
synonym: "Canal of Herring" EXACT []
synonym: "canal of herring" RELATED []
synonym: "Cholangiole" EXACT []
synonym: "cholangiole" EXACT []
synonym: "Intralobular bile duct" EXACT []
xref: FMA:17545
xref: MA:0002669
is_a: UBERON:0002394 ! bile duct
relationship: part_of UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0001283
name: bile canaliculus
alt_id: UBERON:FMA_17547-MA_0002495
def: "." [Wikipedia:Bile_canaliculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bile canaliculus" EXACT []
xref: BTO:0002841
xref: FMA:17547
xref: MA:0002495
xref: ncithesaurus:Bile_Canaliculus
xref: ZFA:0005163
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001113 ! lobe of liver
[Term]
id: UBERON:0001284
name: renal column
alt_id: UBERON:FMA_17633-MA_0001651
def: "." [Wikipedia:Renal_column]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Renal column" EXACT []
synonym: "Renal column of Bertini" EXACT []
synonym: "renal column of bertini" EXACT []
xref: FMA:17633
xref: MA:0001651
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002189 ! outer cortex of kidney
[Term]
id: UBERON:0001285
name: nephron
alt_id: UBERON:FMA_17640-MA_0000375-XAO_0000145
def: "The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]" [PMID:9268568, Wikipedia:Nephron]
subset: uberon_slim
synonym: "Nephron" EXACT []
xref: BTO:0000924
xref: FMA:17640
xref: GAID:428
xref: MA:0000375
xref: ncithesaurus:Nephron
xref: XAO:0000145
xref: ZFA:0005282
is_a: UBERON:0000064 ! organ part
relationship: develops_from UBERON:0003220 ! metanephric blastema
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001286
name: bowman's space
alt_id: UBERON:FMA_17676-MA_0001664
def: "." [Wikipedia:Bowman's_space]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bowman's space" EXACT []
synonym: "Urinary space" EXACT []
synonym: "urinary space" EXACT []
xref: FMA:17676
xref: MA:0001664
xref: ncithesaurus:Urinary_Space
xref: ZFA:0005283
xref: ZFA:0005312
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001230 ! glomerular capsule
[Term]
id: UBERON:0001287
name: proximal convoluted tubule
alt_id: UBERON:FMA_17693-MA_0001669-ZFA_0001620
def: "Most anterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007). Wingert, 2007." [Wikipedia:Proximal_convoluted_tubule, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "first convoluted tubule" RELATED []
synonym: "PCT" RELATED []
synonym: "Proximal convoluted renal tubule" EXACT []
synonym: "proximal convoluted renal tubule" EXACT []
synonym: "Proximal convoluted tubule" EXACT []
synonym: "Tubulus contortus proximalis" EXACT []
synonym: "tubulus contortus proximalis" EXACT []
xref: FMA:17693
xref: MA:0001669
xref: ZFA:0001620
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0001231 ! renal tubule
[Term]
id: UBERON:0001288
name: loop of Henle
alt_id: UBERON:FMA_17698-MA_0001675
def: "Portion of the nephron that leads from the proximal convoluted tubule to the distal convoluted tubule. The loop has a hairpin bend in the renal medulla. The main function of this structure is to create a concentration gradient in the medulla of the kidney. By means of a countercurrent multiplier system, which utilizes sodium pumps, it creates an area of high sodium concentration deep in the medulla, near the collecting duct. Water present in the filtrate in the collecting duct flows through aquaporin channels out of the collecting duct, moving passively down its concentration gradient. This process reabsorbs water and creates a concentrated urine for excretion[WP]." [Wikipedia:Loop_of_henle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Henle loop" EXACT []
synonym: "henle's loop" EXACT []
synonym: "Loop of Henle" EXACT []
xref: FMA:17698
xref: GAID:437
xref: HOG:0001270
xref: MA:0001675
xref: ncithesaurus:Loop_of_Henle
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001231 ! renal tubule
[Term]
id: UBERON:0001289
name: descending limb of loop of Henle
alt_id: UBERON:FMA_17705-MA_0001679
def: "Portion of the renal tubule constituting the first part of the loop of Henle[WP]." [Wikipedia:Descending_limb_of_loop_of_henle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Descending limb of Henle's loop" EXACT []
synonym: "descending limb of henle's loop" EXACT []
synonym: "Descending limb of loop of Henle" EXACT []
synonym: "loop of henle descending limb" EXACT []
xref: FMA:17705
xref: MA:0001679
xref: ncithesaurus:Descending_Limb_of_the_Henle_s_Loop
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001288 ! loop of Henle
relationship: part_of UBERON:0003060 ! pronephric duct
[Term]
id: UBERON:0001290
name: proximal straight tubule
alt_id: UBERON:FMA_17716-MA_0002614-ZFA_0001621
def: "Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal convoluted tubule. Wingert, 2007." [Wikipedia:Proximal_straight_tubule, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pars recta" RELATED []
synonym: "Proximal straight tubule" EXACT []
synonym: "proximal tubule segment 3" RELATED []
synonym: "Thick descending limb of proximal tubule" EXACT []
synonym: "thick descending limb of proximal tubule" EXACT []
synonym: "Tubulus rectus proximalis" EXACT []
synonym: "tubulus rectus proximalis" EXACT []
xref: FMA:17716
xref: MA:0002614
xref: ZFA:0001621
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0001289 ! descending limb of loop of Henle
[Term]
id: UBERON:0001291
name: ascending limb of loop of Henle
alt_id: UBERON:FMA_17717-MA_0001676
def: "a segment of the nephron in the kidney. It can be divided into two parts: that in the renal medulla, and that in the renal cortex[Wikipedia:Thick_ascending_limb_of_loop_of_Henle]. sub-portion of the loop of Henle in the nephron of the kidney. As filtrate passes back up it, the concentration of the surrounding medulla decreases. The thin ascending limb is not permeable to water, but it is permeable to ions[Wikipedia:Thin_ascending_limb_of_loop_of_Henle]." [Wikipedia:Ascending_limb_of_loop_of_Henle]
comment: TODO: thick/thin check
subset: uberon_slim
synonym: "Ascending limb of Henle's loop" EXACT []
synonym: "ascending limb of henle's loop" EXACT []
synonym: "Ascending limb of loop of Henle" EXACT []
synonym: "distal straight tubule" NARROW []
synonym: "loop of henle ascending limb" EXACT []
synonym: "Thick ascending limb of Henle's loop" NARROW []
xref: FMA:17717
xref: MA:0001676
xref: ncithesaurus:Ascending_Limb_of_the_Henle_s_Loop
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001288 ! loop of Henle
[Term]
id: UBERON:0001292
name: distal convoluted tubule
alt_id: UBERON:FMA_17721-MA_0001666
def: "a portion of kidney nephron between the loop of Henle and the collecting duct system." [Wikipedia:Distal_convoluted_tubule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Distal convoluted renal tubule" EXACT []
synonym: "distal convoluted renal tubule" EXACT []
synonym: "Distal convoluted tubule" EXACT []
synonym: "second convoluted tubule" RELATED []
synonym: "Tubulus contortus distalis" EXACT []
synonym: "tubulus contortus distalis" EXACT []
xref: FMA:17721
xref: MA:0001666
xref: ncithesaurus:Distal_Convoluted_Tubule
is_a: UBERON:0000064 ! organ part
relationship: develops_from UBERON:0003220 ! metanephric blastema
relationship: part_of UBERON:0001225 ! cortex of kidney
relationship: part_of UBERON:0001231 ! renal tubule
[Term]
id: UBERON:0001293
name: outer medulla of kidney
alt_id: UBERON:FMA_17733-MA_0001653
comment: This class was created automatically from a combination of ontologies
synonym: "Outer medulla of kidney" EXACT []
synonym: "Outer renal medulla" EXACT []
synonym: "outer renal medulla" EXACT []
synonym: "Outer zone of medulla of kidney" EXACT []
synonym: "outer zone of medulla of kidney" EXACT []
synonym: "Outer zone of renal medulla" EXACT []
synonym: "outer zone of renal medulla" EXACT []
xref: FMA:17733
xref: MA:0001653
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001294
name: inner medulla of kidney
alt_id: UBERON:FMA_17734-MA_0001652
comment: This class was created automatically from a combination of ontologies
synonym: "Inner medulla of kidney" EXACT []
synonym: "Inner renal medulla" EXACT []
synonym: "inner renal medulla" EXACT []
synonym: "Inner zone of medulla of kidney" EXACT []
synonym: "inner zone of medulla of kidney" EXACT []
synonym: "Inner zone of renal medulla" EXACT []
synonym: "inner zone of renal medulla" EXACT []
xref: FMA:17734
xref: MA:0001652
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001295
name: endometrium
alt_id: UBERON:FMA_17742-MA_0000390-MIAA_0000319
def: "inner membrane of the mammalian uterus.." [Wikipedia:Endometrium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Endometrium" EXACT []
synonym: "Tunica mucosa (Endometrium)" EXACT []
synonym: "tunica mucosa (endometrium)" EXACT []
xref: EFO:0000980
xref: FMA:17742
xref: GAID:377
xref: HOG:0001285
xref: MA:0000390
xref: MAT:0000319
xref: MIAA:0000319
xref: ncithesaurus:Endometrium
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0001296
name: myometrium
alt_id: UBERON:FMA_17743-MA_0000391
def: "middle layer of the uterine wall consisting of smooth muscle cells and supporting stromal and vascular tissue." [http://en.wikipedia.org/wiki/Myometrium, Wikipedia:Myometrium]
comment: The inner layer of the uterine wall is the endometrium or uterine lining, and the outer layer the serosa or perimetrium. The myometrium stretches (the smooth muscle cells expand in both size and number[1]) during pregnancy to allow for the harboring of the pregnancy, and contracts in a coordinated fashion during the process of labor. After delivery the myometrium contracts to expel the placenta and reduce blood loss.
subset: uberon_slim
synonym: "Myometrium" EXACT []
synonym: "Tunica muscularis (Myometrium)" EXACT []
synonym: "tunica muscularis (myometrium)" EXACT []
synonym: "uterine smooth muscle" RELATED []
xref: BTO:0000907
xref: EFO:0001970
xref: FMA:17743
xref: GAID:171
xref: HOG:0001281
xref: MA:0000391
xref: MeSH:D009215
xref: ncithesaurus:Myometrium
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: part_of UBERON:0000995 ! uterus
relationship: surrounded_by UBERON:0001297 ! serosa of uterus
relationship: surrounds UBERON:0001295 ! endometrium
[Term]
id: UBERON:0001297
name: serosa of uterus
alt_id: UBERON:FMA_17744-MA_0001729
def: "Outer serosa layer of the uterus." [Wikipedia:Perimetrium]
comment: TODO - check for parallel structure with peritoneum
synonym: "perimetrium" RELATED [http://en.wikipedia.org/wiki/Perimetrium]
synonym: "Serosa of uterus" EXACT []
synonym: "Serous coat of uterus" EXACT []
synonym: "serous coat of uterus" EXACT []
synonym: "Tunica serosa (Perimetrium)" EXACT []
synonym: "tunica serosa (perimetrium)" EXACT []
synonym: "Uterine serosa" EXACT []
synonym: "uterine serosa" EXACT []
synonym: "uterus serosa" EXACT []
synonym: "Visceral peritoneum of uterus" EXACT []
synonym: "visceral peritoneum of uterus" EXACT []
xref: FMA:17744
xref: MA:0001729
is_a: UBERON:0000042 ! serous membrane
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0000995 ! uterus
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0001298
name: psoas major
alt_id: UBERON:FMA_18060-MA_0002358
def: "." [Wikipedia:Psoas_major]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Psoas major" EXACT []
synonym: "Psoas major muscle" EXACT []
synonym: "psoas major muscle" EXACT []
xref: BTO:0001877
xref: FMA:18060
xref: MA:0002358
xref: ncithesaurus:Psoas_Major
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001299
name: glans penis
alt_id: UBERON:FMA_18247-MA_0002726
def: "." [Wikipedia:Glans_penis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Glans penis" EXACT []
xref: BTO:0003118
xref: FMA:18247
xref: GAID:0000012
xref: HOG:0001475
xref: MA:0002726
xref: ncithesaurus:Glans_Penis
xref: OpenCyc:Mx4rvdCpE5wpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000989 ! penis
[Term]
id: UBERON:0001300
name: scrotum
alt_id: UBERON:FMA_18252-MA_0000409
def: "." [Wikipedia:Scrotum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Scrotum" EXACT []
xref: BTO:0003098
xref: FMA:18252
xref: GAID:393
xref: MA:0000409
xref: ncithesaurus:Scrotum
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001301
name: epididymis
alt_id: UBERON:FMA_18255-MA_0000397-MIAA_0000130
def: "A narrow, tightly-coiled tube connecting the efferent ducts from the rear of each testicle to its vas deferens." [Wikipedia:Epididymis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Epididymis" EXACT []
synonym: "epididymus" EXACT []
xref: BTO:0000408
xref: EFO:0000982
xref: FMA:18255
xref: GAID:397
xref: galen:Epididymis
xref: HOG:0001265
xref: MA:0000397
xref: MAT:0000130
xref: MIAA:0000130
xref: ncithesaurus:Epididymis
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0000473 ! testis
[Term]
id: UBERON:0001302
name: right uterine tube
alt_id: UBERON:FMA_18483-MA_0001717
comment: This class was created automatically from a combination of ontologies
synonym: "Right fallopian tube" EXACT []
synonym: "right fallopian tube" EXACT []
synonym: "Right oviduct" EXACT []
synonym: "right oviduct" EXACT []
synonym: "Right uterine tube" EXACT []
xref: FMA:18483
xref: MA:0001717
xref: ncithesaurus:Right_Fallopian_Tube
is_a: UBERON:0003889 ! fallopian tube
[Term]
id: UBERON:0001303
name: left uterine tube
alt_id: UBERON:FMA_18484-MA_0001716
comment: This class was created automatically from a combination of ontologies
synonym: "Left fallopian tube" EXACT []
synonym: "left fallopian tube" EXACT []
synonym: "Left oviduct" EXACT []
synonym: "left oviduct" EXACT []
synonym: "Left uterine tube" EXACT []
xref: FMA:18484
xref: MA:0001716
xref: ncithesaurus:Left_Fallopian_Tube
is_a: UBERON:0003889 ! fallopian tube
[Term]
id: UBERON:0001304
name: germinal epithelium of ovary
alt_id: UBERON:FMA_18629-MA_0001711
comment: This class was created automatically from a combination of ontologies
synonym: "Epithelium superficiale (Ovarium)" EXACT []
synonym: "epithelium superficiale (ovarium)" EXACT []
synonym: "Germinal epithelium of ovary" EXACT []
synonym: "ovary germinal epithelium" EXACT []
xref: FMA:18629
xref: HOG:0000630
xref: MA:0001711
is_a: UBERON:0000484 ! simple cuboidal epithelium
relationship: part_of UBERON:0001307 ! capsule of ovary
[Term]
id: UBERON:0001305
name: follicle of ovary
alt_id: UBERON:FMA_18640-MA_0001707-ZFA_0001110
def: "Oocyte development of zebrafish has been divided into five stages based on morphological criteria and on physiological and biochemical events. Stage I follicles (less than 140 microns) are primary growth stage, stage II follicles (140-340 microns) are cortical alveolus stage, stage III (340-690 microns) are vitellogenesis, stage IV (690-730 microns) are oocyte maturation, and stage V follicles are matured egg.Selman et al, 1993." [Wikipedia:Ovarian_follicle, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "egg follicle" RELATED []
synonym: "Follicle of ovary" EXACT []
synonym: "Follicle of ovary viewed macroscopically" EXACT []
synonym: "follicle of ovary viewed macroscopically" EXACT []
synonym: "Ovarian follicle" EXACT []
synonym: "ovarian follicle" EXACT []
synonym: "Ovary follicle" EXACT []
synonym: "ovary follicle" EXACT []
xref: BTO:0000475
xref: FMA:18640
xref: GAID:371
xref: HOG:0001536
xref: MA:0001707
xref: MAT:0000449
xref: ncithesaurus:Ovarian_Follicle
xref: TAO:0001110
xref: ZFA:0001110
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000992 ! ovary
[Term]
id: UBERON:0001306
name: cumulus oophorus
alt_id: UBERON:FMA_18659-MA_0002414
def: "." [Wikipedia:Cumulus_oophorus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cumulus oophorus" EXACT []
synonym: "Cumulus ovaricus" EXACT []
synonym: "cumulus ovaricus" EXACT []
xref: FMA:18659
xref: MA:0002414
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001305 ! follicle of ovary
[Term]
id: UBERON:0001307
name: capsule of ovary
alt_id: UBERON:FMA_18662-MA_0001706
comment: This class was created automatically from a combination of ontologies
synonym: "Capsule of ovary" EXACT []
synonym: "Ovarian capsule" EXACT []
synonym: "ovarian capsule" EXACT []
synonym: "Ovary capsule" EXACT []
synonym: "ovary capsule" EXACT []
xref: FMA:18662
xref: MA:0001706
xref: ncithesaurus:Ovarian_Capsule
is_a: UBERON:0003893 ! capsule
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0000992 ! ovary
relationship: surrounds UBERON:0000992 ! ovary
[Term]
id: UBERON:0001308
name: external iliac artery
alt_id: UBERON:FMA_18805-MA_0001973
def: "." [Wikipedia:External_iliac_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "External iliac artery" EXACT []
xref: FMA:18805
xref: galen:ExternalIliacArtery
xref: MA:0001973
xref: ncithesaurus:External_Iliac_Artery
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel
relationship: part_of UBERON:0001191 ! common iliac artery
[Term]
id: UBERON:0001309
name: internal iliac artery
alt_id: UBERON:FMA_18808-MA_0001974
def: "." [Wikipedia:Internal_iliac_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Internal iliac artery" EXACT []
xref: FMA:18808
xref: galen:InternalIliacArtery
xref: MA:0001974
xref: ncithesaurus:Internal_Iliac_Artery
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel
relationship: part_of UBERON:0001191 ! common iliac artery
[Term]
id: UBERON:0001310
name: umbilical artery
alt_id: UBERON:FMA_18820-MA_0002072
def: "." [Wikipedia:Umbilical_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Umbilical artery" EXACT []
xref: BTO:0000841
xref: EHDAA:1026
xref: EHDAA:410
xref: FMA:18820
xref: GAID:516
xref: MA:0002072
xref: ncithesaurus:Umbilical_Artery
xref: OpenCyc:Mx4rCWdhMGWbEd2AAABQjYGu0g
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001311
name: inferior vesical artery
alt_id: UBERON:FMA_18823-MA_0002079
def: "." [Wikipedia:Inferior_vesical_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Arteria vesicali inferior" EXACT []
synonym: "arteria vesicali inferior" EXACT []
synonym: "Inferior vesical artery" EXACT []
xref: FMA:18823
xref: MA:0002079
xref: ncithesaurus:Inferior_Vesical_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001312
name: superior vesical artery
alt_id: UBERON:FMA_18839-MA_0002080
def: "." [Wikipedia:Superior_vesical_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Arteria vesicalis superior" EXACT []
synonym: "arteria vesicalis superior" EXACT []
synonym: "Superior vesical artery" EXACT []
xref: FMA:18839
xref: MA:0002080
xref: ncithesaurus:Superior_Vesical_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001313
name: iliolumbar artery
alt_id: UBERON:FMA_18845-MA_0001976
def: "." [Wikipedia:Iliolumbar_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ilio-lumbar artery" EXACT []
synonym: "Iliolumbar artery" EXACT []
xref: FMA:18845
xref: MA:0001976
xref: ncithesaurus:Iliolumbar_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001314
name: obturator artery
alt_id: UBERON:FMA_18865-MA_0002008
def: "." [Wikipedia:Obturator_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Obturator artery" EXACT []
xref: FMA:18865
xref: MA:0002008
xref: ncithesaurus:Obturator_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001315
name: superior gluteal artery
alt_id: UBERON:FMA_18868-MA_0002054
def: "." [Wikipedia:Superior_gluteal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Arteria glutealis superior" EXACT []
synonym: "arteria glutealis superior" EXACT []
synonym: "Superior gluteal artery" EXACT []
xref: FMA:18868
xref: MA:0002054
xref: ncithesaurus:Gluteal_Artery
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0001015 ! muscle system
[Term]
id: UBERON:0001316
name: external iliac vein
alt_id: UBERON:FMA_18883-MA_0002144
def: "." [Wikipedia:External_iliac_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "External iliac vein" EXACT []
xref: FMA:18883
xref: galen:ExternalIliacVein
xref: MA:0002144
xref: ncithesaurus:External_Iliac_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001317
name: internal iliac vein
alt_id: UBERON:FMA_18884-MA_0002145
def: "." [Wikipedia:Internal_iliac_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Internal iliac vein" EXACT []
xref: FMA:18884
xref: galen:InternalIliacVein
xref: HOG:0000749
xref: MA:0002145
xref: ncithesaurus:Internal_Iliac_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001318
name: inferior vesical vein
alt_id: UBERON:FMA_18890-MA_0002264
comment: This class was created automatically from a combination of ontologies
synonym: "Inferior vesical vein" EXACT []
xref: FMA:18890
xref: MA:0002264
is_a: UBERON:0002460 ! vesical vein
[Term]
id: UBERON:0001319
name: vaginal vein
alt_id: UBERON:FMA_18899-MA_0002251
def: "." [Wikipedia:Vaginal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Vaginal vein" EXACT []
xref: FMA:18899
xref: MA:0002251
is_a: UBERON:0001638 ! vein
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0001320
name: iliolumbar vein
alt_id: UBERON:FMA_18902-MA_0002146
def: "." [Wikipedia:Iliolumbar_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ilio-lumbar vein" EXACT []
synonym: "Iliolumbar vein" EXACT []
xref: FMA:18902
xref: MA:0002146
xref: ncithesaurus:Iliolumbar_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001321
name: obturator vein
alt_id: UBERON:FMA_18914-MA_0002183
def: "." [Wikipedia:Obturator_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Obturator vein" EXACT []
xref: FMA:18914
xref: MA:0002183
xref: ncithesaurus:Obturator_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001322
name: sciatic nerve
alt_id: UBERON:FMA_19034-MA_0001172
def: "." [Wikipedia:Sciatic_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sciatic nerve" EXACT []
xref: BTO:0001221
xref: EFO:0001417
xref: EHDAA:5659
xref: FMA:19034
xref: GAID:852
xref: HOG:0000894
xref: MA:0001172
xref: ncithesaurus:Sciatic_Nerve
xref: NIF_GrossAnatomy:birnlex_1133
xref: OpenCyc:Mx4rv7MlDJwpEbGdrcN5Y29ycA
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve
relationship: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0001815 ! lumbosacral nerve plexus
[Term]
id: UBERON:0001323
name: tibial nerve
alt_id: UBERON:FMA_19035-MA_0001173
def: "." [Wikipedia:Tibial_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Medial popliteal nerve" EXACT []
synonym: "medial popliteal nerve" EXACT []
synonym: "Tibial nerve" EXACT []
xref: FMA:19035
xref: GAID:854
xref: MA:0001173
xref: ncithesaurus:Tibial_Nerve
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001324
name: common fibular nerve
alt_id: UBERON:FMA_19039-MA_0001169
def: "." [Wikipedia:Common_fibular_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Common fibular nerve" EXACT []
synonym: "Common peroneal nerve" EXACT []
synonym: "common peroneal nerve" EXACT []
synonym: "peroneal nerve" EXACT []
xref: FMA:19039
xref: GAID:853
xref: MA:0001169
xref: ncithesaurus:Peroneal_Nerve
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001325
name: muscle of pelvis
alt_id: UBERON:FMA_19086-MA_0000534
def: "Muscle (organ) which is a part of the pelvis. Examples: levator ani," []
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Muscle of pelvis" EXACT []
synonym: "Pelvic muscle" EXACT []
synonym: "pelvic muscle" EXACT []
synonym: "pelvis muscle" EXACT []
xref: FMA:19086
xref: MA:0000534
is_a: UBERON:0001774 ! muscle of trunk
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002355 ! pelvis
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0001326
name: levator ani
alt_id: UBERON:FMA_19087-MA_0002332
def: "." [Wikipedia:Levator_ani]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Levator ani" EXACT []
xref: FMA:19087
xref: MA:0002332
xref: ncithesaurus:Levator_Ani
is_a: UBERON:0001325 ! muscle of pelvis
relationship: part_of UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0001327
name: coccygeus
alt_id: UBERON:FMA_19088-MA_0002277
def: "." [Wikipedia:Coccygeus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Coccygeus" EXACT []
synonym: "Ischiococcygeus" EXACT []
synonym: "ischiococcygeus" EXACT []
xref: FMA:19088
xref: MA:0002277
is_a: UBERON:0001325 ! muscle of pelvis
[Term]
id: UBERON:0001328
name: lobe of prostate
alt_id: UBERON:FMA_19570-MA_0001738
comment: This class was created automatically from a combination of ontologies
synonym: "Lobe of prostate" EXACT []
synonym: "Lobe of prostate gland" EXACT []
synonym: "lobe of prostate gland" EXACT []
synonym: "prostate gland lobe" EXACT []
synonym: "Prostatic lobe" EXACT []
synonym: "prostatic lobe" EXACT []
xref: BTO:0000548
xref: FMA:19570
xref: MA:0001738
xref: ncithesaurus:Prostate_Gland_Lobe
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002367 ! prostate
[Term]
id: UBERON:0001329
name: anterior lobe of prostate
alt_id: UBERON:FMA_19574-MA_0002422
comment: This class was created automatically from a combination of ontologies
synonym: "Anterior lobe of prostate" EXACT []
synonym: "Anterior lobe of prostate gland" EXACT []
synonym: "anterior lobe of prostate gland" EXACT []
synonym: "Commissure of prostate" EXACT []
synonym: "commissure of prostate" EXACT []
synonym: "Isthmus of prostate" EXACT []
synonym: "isthmus of prostate" EXACT []
synonym: "Isthmus of prostate gland" EXACT []
synonym: "isthmus of prostate gland" EXACT []
synonym: "prostate gland anterior lobe" EXACT []
synonym: "Prostatic isthmus" EXACT []
synonym: "prostatic isthmus" EXACT []
xref: BTO:0003158
xref: FMA:19574
xref: MA:0002422
is_a: UBERON:0001328 ! lobe of prostate
[Term]
id: UBERON:0001330
name: pampiniform plexus
alt_id: UBERON:FMA_19607-MA_0001866
def: "." [Wikipedia:Pampiniform_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pampiniform plexus" EXACT []
synonym: "Pampiniform venous plexus" EXACT []
synonym: "pampiniform venous plexus" EXACT []
synonym: "Plexus of veins of fascia of prostate" EXACT []
synonym: "plexus of veins of fascia of prostate" EXACT []
synonym: "Venous plexus of fascia of prostate" EXACT []
synonym: "venous plexus of fascia of prostate" EXACT []
synonym: "Venous plexus of fascia of prostate gland" EXACT []
synonym: "venous plexus of fascia of prostate gland" EXACT []
xref: FMA:19607
xref: MA:0001866
is_a: UBERON:0001593 ! venous plexus
[Term]
id: UBERON:0001331
name: skin of penis
alt_id: UBERON:FMA_19638-MA_0002727
comment: This class was created automatically from a combination of ontologies
synonym: "Penile skin" EXACT []
synonym: "penile skin" EXACT []
synonym: "penis skin" EXACT []
synonym: "Skin of penis" EXACT []
xref: FMA:19638
xref: MA:0002727
is_a: UBERON:0000014 ! zone of skin
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000989 ! penis
relationship: continuous_with UBERON:0001085 ! skin of trunk
relationship: part_of UBERON:0000989 ! penis
[Term]
id: UBERON:0001332
name: prepuce of penis
alt_id: UBERON:FMA_19639-MA_0000407
def: "." [Wikipedia:Foreskin]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Foreskin" EXACT []
synonym: "foreskin" EXACT []
synonym: "Penile prepuce" EXACT []
synonym: "penile prepuce" EXACT []
synonym: "prepuce" EXACT []
synonym: "Prepuce of penis" EXACT []
xref: BTO:0001113
xref: EFO:0001664
xref: FMA:19639
xref: MA:0000407
xref: ncithesaurus:Prepuce
xref: OpenCyc:Mx4rvVjlTZwpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0001331 ! skin of penis
[Term]
id: UBERON:0001333
name: male urethra
alt_id: UBERON:FMA_19668-MA_0002640
def: "." [Wikipedia:Male_urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Male urethra" EXACT []
xref: FMA:19668
xref: MA:0002640
xref: ncithesaurus:Male_Urethra
is_a: UBERON:0000057 ! urethra
relationship: part_of UBERON:0003101 ! male organism
[Term]
id: UBERON:0001334
name: female urethra
alt_id: UBERON:FMA_19669-MA_0002637
def: "." [Wikipedia:Female_urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Female urethra" EXACT []
xref: FMA:19669
xref: MA:0002637
xref: ncithesaurus:Female_Urethra
is_a: UBERON:0000057 ! urethra
[Term]
id: UBERON:0001335
name: prostatic urethra
alt_id: UBERON:FMA_19673-MA_0002646
def: "." [Wikipedia:Prostatic_urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Prostatic part of urethra" EXACT []
synonym: "prostatic part of urethra" EXACT []
synonym: "Prostatic urethra" EXACT []
xref: BTO:0003163
xref: FMA:19673
xref: MA:0002646
xref: ncithesaurus:Prostatic_Portion_of_the_Male_Urethra
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001333 ! male urethra
[Term]
id: UBERON:0001336
name: membranous urethra
alt_id: UBERON:FMA_19674-MA_0002647
def: "." [Wikipedia:Membranous_urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Intermediate part of urethra" EXACT []
synonym: "intermediate part of urethra" EXACT []
synonym: "Intermediate urethra" EXACT []
synonym: "intermediate urethra" EXACT []
synonym: "Membranous part of urethra" EXACT []
synonym: "membranous part of urethra" EXACT []
synonym: "Membranous urethra" EXACT []
synonym: "Pars membranacea (urethrae)" EXACT []
synonym: "pars membranacea (urethrae)" EXACT []
xref: FMA:19674
xref: MA:0002647
xref: ncithesaurus:Membranous_Urethra
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0001337
name: spongiose part of urethra
alt_id: UBERON:FMA_19675-MA_0002643
def: "." [Wikipedia:Penile_urethra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Penile urethra" EXACT []
synonym: "penile urethra" EXACT []
synonym: "Spongiose part of urethra" EXACT []
synonym: "Spongiose urethra" EXACT []
synonym: "spongiose urethra" EXACT []
synonym: "Spongy urethra (male)" EXACT []
synonym: "spongy urethra (male)" EXACT []
xref: FMA:19675
xref: MA:0002643
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001333 ! male urethra
[Term]
id: UBERON:0001338
name: urethral gland
alt_id: UBERON:FMA_19683-MA_0001688
def: "." [Wikipedia:Urethral_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "urethra gland" EXACT []
synonym: "Urethral gland" EXACT []
xref: FMA:19683
xref: MA:0001688
is_a: UBERON:0002530 ! gland
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0001339
name: ischiocavernosus
alt_id: UBERON:FMA_19730-MA_0002330
def: "." [Wikipedia:Ischiocavernosus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ischiocavernosus" EXACT []
xref: FMA:19730
xref: MA:0002330
xref: ncithesaurus:Ischiocavernosus
is_a: UBERON:0002379 ! perineal muscle
[Term]
id: UBERON:0001340
name: dorsal artery of penis
alt_id: UBERON:FMA_19795-MA_0001946
def: "." [Wikipedia:Dorsal_artery_of_penis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Dorsal artery of penis" EXACT []
synonym: "Dorsal penile artery" EXACT []
synonym: "dorsal penile artery" EXACT []
synonym: "dorsal penis artery" EXACT []
xref: FMA:19795
xref: MA:0001946
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0000989 ! penis
[Term]
id: UBERON:0001341
name: lesser sac
alt_id: UBERON:FMA_19800-MA_0000445
def: "." [Wikipedia:Lesser_sac]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lesser sac" EXACT []
synonym: "Omental bursa" EXACT []
synonym: "omental bursa" EXACT []
xref: EHDAA:2335
xref: FMA:19800
xref: HOG:0000458
xref: MA:0000445
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001179 ! peritoneal cavity
[Term]
id: UBERON:0001342
name: mesovarium
alt_id: UBERON:FMA_19815-ZFA_0000333
def: "." [Wikipedia:Mesovarium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Mesovarium" EXACT []
xref: FMA:19815
xref: TAO:0000333
xref: ZFA:0000333
is_a: UBERON:0002095 ! mesentery
relationship: part_of UBERON:0000992 ! ovary
relationship: part_of UBERON:0002095 ! mesentery
[Term]
id: UBERON:0001343
name: seminiferous tubule of testis
alt_id: UBERON:FMA_19825-XAO_0003088
def: "." [Wikipedia:Seminiferous_tubule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Seminiferous tubule" EXACT []
synonym: "seminiferous tubule" EXACT []
synonym: "Seminiferous tubule of testis" EXACT []
xref: BTO:0001235
xref: EFO:0001404
xref: FMA:19825
xref: GAID:400
xref: HOG:0001363
xref: MA:0000412
xref: MAT:0000503
xref: ncithesaurus:Seminiferous_Tubule
xref: XAO:0003088
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0002117 ! testicle
[Term]
id: UBERON:0001344
name: epithelium of vagina
alt_id: UBERON:FMA_19978-MA_0001730
comment: This class was created automatically from a combination of ontologies
synonym: "Epithelium of vagina" EXACT []
synonym: "vagina epithelium" EXACT []
synonym: "Vaginal epithelium" EXACT []
synonym: "vaginal epithelium" EXACT []
xref: BTO:0000422
xref: FMA:19978
xref: MA:0001730
xref: ncithesaurus:Vaginal_Epithelium
is_a: UBERON:0000486 ! multilaminar epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000996 ! vagina
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0001345
name: fornix
alt_id: UBERON:FMA_19985-MA_0002747
def: "This class was obsoleted." [Wikipedia:Fornix]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
is_obsolete: true
consider: UBERON:0000051
consider: UBERON:0000052
[Term]
id: UBERON:0001346
name: hymen of vagina
alt_id: UBERON:FMA_20005-MA_0002465
comment: This class was created automatically from a combination of ontologies
synonym: "Hymen of vagina" EXACT []
synonym: "Hymen vaginae" EXACT []
synonym: "hymen vaginae" EXACT []
synonym: "Vaginal hymen" EXACT []
synonym: "vaginal hymen" EXACT []
xref: FMA:20005
xref: MA:0002465
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0001347
name: white adipose tissue
alt_id: UBERON:FMA_20117-MA_0000058-MIAA_0000199
def: "Adipose tissue, cells of which contain a single large lipid droplet." [Wikipedia:White_adipose_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Adipocytus unigutturalis" EXACT []
synonym: "adipocytus unigutturalis" EXACT []
synonym: "Textus adiposus albus" EXACT []
synonym: "textus adiposus albus" EXACT []
synonym: "Unilocular adipose tissue" EXACT []
synonym: "unilocular adipose tissue" EXACT []
synonym: "White adipose tissue" EXACT []
synonym: "White fat" EXACT []
synonym: "white fat" EXACT []
xref: BTO:0001456
xref: EFO:0000813
xref: FMA:20117
xref: MA:0000058
xref: MAT:0000199
xref: MIAA:0000199
xref: ncithesaurus:White_Adipose_Tissue
is_a: UBERON:0001013 ! adipose tissue
[Term]
id: UBERON:0001348
name: brown adipose tissue
alt_id: UBERON:FMA_20118-MA_0000057-MIAA_0000198
def: "Adipose tissue, cells of which contain multiple small lipid droplets." [Wikipedia:Brown_adipose_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Adipocytus multigutturalis" EXACT []
synonym: "adipocytus multigutturalis" EXACT []
synonym: "Brown adipose tissue" EXACT []
synonym: "Brown fat" EXACT []
synonym: "brown fat" EXACT []
synonym: "Multilocular adipose tissue" EXACT []
synonym: "multilocular adipose tissue" EXACT []
synonym: "Textus adiposus fuscus" EXACT []
synonym: "textus adiposus fuscus" EXACT []
xref: BTO:0000156
xref: EFO:0000812
xref: FMA:20118
xref: GAID:921
xref: MA:0000057
xref: MAT:0000198
xref: MIAA:0000198
xref: ncithesaurus:Brown_Adipose_Tissue
is_a: UBERON:0001013 ! adipose tissue
[Term]
id: UBERON:0001349
name: vestibule
alt_id: UBERON:FMA_20192-XAO_0000199
def: "Anatomical cavity that connects an organ cavity, organ cavity subdivision or cavity of body part subdivision to the exterior, completely or partially surrounded by organs or organ parts that are lined by epithelium. Examples: preputial cavity, vestibule of vagina." [Wikipedia:Vestibule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Vestibule" EXACT []
xref: FMA:20192
xref: GAID:881
xref: ncithesaurus:Vestibule
xref: XAO:0000199
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001839 ! bony labyrinth
[Term]
id: UBERON:0001350
name: coccyx
alt_id: UBERON:FMA_20229-MA_0000696
def: "." [Wikipedia:Coccyx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Coccyx" EXACT []
synonym: "Coccyx [coccygeal vertebrae I-IV]" EXACT []
synonym: "coccyx [coccygeal vertebrae i-iv]" EXACT []
synonym: "tail bone" EXACT []
synonym: "Tailbone" EXACT []
synonym: "tailbone" EXACT []
xref: AAO:0000731
xref: FMA:20229
xref: GAID:239
xref: galen:Coccyx
xref: MA:0000696
xref: ncithesaurus:Coccyx
xref: OpenCyc:Mx4rv1XqHJwpEbGdrcN5Y29ycA
is_a: UBERON:0001474 ! bone
relationship: part_of UBERON:0002415 ! tail
[Term]
id: UBERON:0001351
name: lacrimal sac
alt_id: UBERON:FMA_20289-MA_0001298
def: "." [Wikipedia:Lacrimal_sac]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lacrimal sac" EXACT []
xref: FMA:20289
xref: MA:0001298
xref: ncithesaurus:Lacrimal_Sac
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001850 ! lacrimal duct
[Term]
id: UBERON:0001352
name: external acoustic meatus
alt_id: UBERON:FMA_20290-MA_0000260
def: "A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter." [Wikipedia:External_acoustic_meatus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Auditory canal" EXACT []
synonym: "auditory canal" EXACT []
synonym: "ear canal" EXACT [Wikipedia:Ear_canal]
synonym: "External acoustic meatus" EXACT []
synonym: "External auditory canal" EXACT []
synonym: "external auditory canal" EXACT []
synonym: "External auditory meatus" EXACT []
synonym: "external auditory meatus" RELATED []
synonym: "Lumen of external acoustic tube" EXACT []
synonym: "lumen of external acoustic tube" EXACT []
xref: EHDAA:8975
xref: FMA:20290
xref: FMA:61734
xref: GAID:864
xref: galen:ExternalAuditoryMeatus
xref: HOG:0000977
xref: MA:0000260
xref: ncithesaurus:External_Acoustic_Meatus
is_a: UBERON:0000464 ! anatomical space
relationship: connects UBERON:0001691 ! external ear
relationship: connects UBERON:0001756 ! middle ear
[Term]
id: UBERON:0001353
name: anal part of perineum
alt_id: UBERON:FMA_20347-MA_0000329
def: "." [Wikipedia:Anal_triangle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anal part of perineum" EXACT []
synonym: "Anal region" EXACT []
synonym: "anal region" EXACT []
synonym: "Anal triangle" EXACT []
synonym: "anal triangle" EXACT []
xref: EFO:0000847
xref: EHDAA:2931
xref: FMA:20347
xref: HOG:0000395
xref: MA:0000329
xref: MAT:0000042
xref: ncithesaurus:Anal_Region
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001354
name: inferior epigastric artery
alt_id: UBERON:FMA_20686-MA_0001978
def: "." [Wikipedia:Inferior_epigastric_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Inferior epigastric artery" EXACT []
xref: FMA:20686
xref: MA:0001978
xref: ncithesaurus:Inferior_Epigastric_Artery
xref: OpenCyc:Mx4rdBvQc6gOEdudWQACs5b6Bw
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel
relationship: part_of UBERON:0001308 ! external iliac artery
[Term]
id: UBERON:0001355
name: deep femoral artery
alt_id: UBERON:FMA_20741-MA_0002027
def: "." [Wikipedia:Deep_femoral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Arteria profunda femoris" EXACT []
synonym: "arteria profunda femoris" EXACT []
synonym: "Deep femoral artery" EXACT []
synonym: "Profunda femoris artery" EXACT []
synonym: "profunda femoris artery" EXACT []
xref: FMA:20741
xref: MA:0002027
xref: ncithesaurus:Deep_Femoral_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001356
name: medial circumflex femoral artery
alt_id: UBERON:FMA_20799-MA_0001996
def: "." [Wikipedia:Medial_circumflex_femoral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Medial circumflex femoral artery" EXACT []
synonym: "Medial femoral circumflex artery" EXACT []
synonym: "medial femoral circumflex artery" EXACT []
xref: FMA:20799
xref: MA:0001996
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001357
name: inferior rectal artery
alt_id: UBERON:FMA_20824-MA_0001979
def: "." [Wikipedia:Inferior_rectal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Inferior hemorrhoidal artery" EXACT []
synonym: "inferior hemorrhoidal artery" EXACT []
synonym: "Inferior rectal artery" EXACT []
xref: FMA:20824
xref: MA:0001979
xref: ncithesaurus:Inferior_Rectal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001358
name: perineal artery
alt_id: UBERON:FMA_20836-MA_0002017
def: "." [Wikipedia:Perineal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Perineal artery" EXACT []
xref: FMA:20836
xref: MA:0002017
xref: ncithesaurus:Perineal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001359
name: cerebrospinal fluid
alt_id: UBERON:FMA_20935-MA_0002503
def: "Transudate contained in the subarachnoid space." [Wikipedia:Cerebrospinal_fluid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cerebrospinal fluid" EXACT []
synonym: "CSF" EXACT []
synonym: "csf" EXACT []
xref: BTO:0000237
xref: EFO:0000329
xref: ENVO:02000029
xref: FMA:20935
xref: GAID:1181
xref: HOG:0001278
xref: MA:0002503
xref: MAT:0000499
xref: ncithesaurus:Cerebrospinal_Fluid
xref: ZFA:0001626
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001360
name: deep circumflex iliac vein
alt_id: UBERON:FMA_21182-MA_0002099
def: "." [Wikipedia:Deep_circumflex_iliac_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Deep circumflex iliac vein" EXACT []
synonym: "deep iliac circumflex vein" EXACT []
synonym: "Vena circumflexa iliaca profunda" EXACT []
synonym: "vena circumflexa iliaca profunda" EXACT []
xref: FMA:21182
xref: MA:0002099
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001361
name: femoral vein
alt_id: UBERON:FMA_21185-MA_0002118
def: "." [Wikipedia:Femoral_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Femoral vein" EXACT []
xref: FMA:21185
xref: GAID:533
xref: galen:FemoralVein
xref: MA:0002118
xref: ncithesaurus:Femoral_Vein
is_a: UBERON:0001638 ! vein
relationship: part_of UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001362
name: perineal vein
alt_id: UBERON:FMA_21246-MA_0002193
comment: This class was created automatically from a combination of ontologies
synonym: "Perineal vein" EXACT []
xref: FMA:21246
xref: MA:0002193
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001363
name: great saphenous vein
alt_id: UBERON:FMA_21376-MA_0002216
def: "." [Wikipedia:Great_saphenous_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Great saphenous vein" EXACT []
synonym: "Greater saphenous vein" EXACT []
synonym: "greater saphenous vein" EXACT []
synonym: "Long saphenous vein" EXACT []
synonym: "long saphenous vein" EXACT []
xref: BTO:0003271
xref: FMA:21376
xref: galen:GreaterSaphenousVein
xref: galen:GreatSaphenousVein
xref: MA:0002216
xref: ncithesaurus:Long_Saphenous_Vein
is_a: UBERON:0001638 ! vein
relationship: part_of UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001364
name: circumpennate
alt_id: UBERON:FMA_21431-ZFA_0000271
synonym: "Circumpennate" EXACT []
synonym: "Radial" EXACT []
synonym: "radial" EXACT []
synonym: "radials" RELATED []
xref: AAO:0000790
xref: FMA:21431
xref: OpenCyc:Mx4rvVjBSZwpEbGdrcN5Y29ycA
xref: TAO:0000271
xref: ZFA:0000271
is_obsolete: true
[Term]
id: UBERON:0001365
name: sacro-iliac joint
alt_id: UBERON:FMA_21440-MA_0001506
def: "." [Wikipedia:Sacro-iliac_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Articulatio sacro-iliaca" EXACT []
synonym: "articulatio sacro-iliaca" EXACT []
synonym: "Sacro-iliac joint" EXACT []
synonym: "Sacroiliac joint" EXACT []
synonym: "sacroiliac joint" EXACT []
xref: FMA:21440
xref: GAID:268
xref: MA:0001506
xref: ncithesaurus:Sacroiliac_Joint
is_a: UBERON:0002217 ! synovial joint
[Term]
id: UBERON:0001366
name: parietal peritoneum
alt_id: UBERON:FMA_21451-ZFA_0005131
def: "The peritoneum that lines the walls of the peritoneal cavity." [Wikipedia:Parietal_peritoneum, ZFIN:curator]
comment: fix coordinated with ZFA
subset: uberon_slim
synonym: "Parietal peritoneum" EXACT []
xref: FMA:21451
xref: HOG:0001527
xref: TAO:0005131
xref: ZFA:0005131
is_a: UBERON:0000064 ! organ part
relationship: bounds UBERON:0001179 ! peritoneal cavity
relationship: part_of UBERON:0002358 ! peritoneum
relationship: surrounds UBERON:0003684 ! abdominal cavity
[Term]
id: UBERON:0001367
name: external anal sphincter
alt_id: UBERON:FMA_21930-MA_0001531
def: "." [Wikipedia:External_anal_sphincter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "External anal sphincter" EXACT []
synonym: "External sphincter ani" EXACT []
synonym: "external sphincter ani" EXACT []
synonym: "Sphincter ani externus" EXACT []
synonym: "sphincter ani externus" RELATED []
xref: FMA:21930
xref: MA:0001531
xref: ncithesaurus:External_Anal_Sphincter
is_a: UBERON:0002379 ! perineal muscle
relationship: part_of UBERON:0001353 ! anal part of perineum
[Term]
id: UBERON:0001368
name: obturator externus
alt_id: UBERON:FMA_22299-MA_0002347
def: "." [Wikipedia:Obturator_externus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "External obturator" EXACT []
synonym: "external obturator" EXACT []
synonym: "Obturator externus" EXACT []
xref: FMA:22299
xref: MA:0002347
is_a: UBERON:0002000 ! gluteal muscle
[Term]
id: UBERON:0001369
name: iliacus
alt_id: UBERON:FMA_22310-MA_0002318
def: "." [Wikipedia:Iliacus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anterior muscle of pelvic girdle" EXACT []
synonym: "anterior muscle of pelvic girdle" EXACT []
synonym: "Iliacus" EXACT []
xref: FMA:22310
xref: MA:0002318
xref: ncithesaurus:Iliacus
is_a: UBERON:0001497 ! muscle of pelvic girdle
[Term]
id: UBERON:0001370
name: gluteus maximus
alt_id: UBERON:FMA_22314-MA_0002309
def: "." [Wikipedia:Gluteus_maximus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Gluteus maximus" EXACT []
synonym: "gluteus superficialis" RELATED []
synonym: "M.gluteus maximus" EXACT []
synonym: "m.gluteus maximus" EXACT []
xref: FMA:22314
xref: MA:0002309
xref: ncithesaurus:Gluteus_Maximus
xref: OpenCyc:Mx4rvVjdMZwpEbGdrcN5Y29ycA
is_a: UBERON:0002000 ! gluteal muscle
[Term]
id: UBERON:0001371
name: gluteus medius
alt_id: UBERON:FMA_22315-MA_0002310
def: "." [Wikipedia:Gluteus_medius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Gluteus medius" EXACT []
xref: FMA:22315
xref: galen:GluteusMedius
xref: MA:0002310
xref: ncithesaurus:Gluteus_Medius
is_a: UBERON:0002000 ! gluteal muscle
[Term]
id: UBERON:0001372
name: psoas minor
alt_id: UBERON:FMA_22350-MA_0002359
def: "." [Wikipedia:Psoas_minor]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Psoas minor" EXACT []
synonym: "Psoas minor muscle" EXACT []
synonym: "psoas minor muscle" EXACT []
xref: BTO:0001878
xref: FMA:22350
xref: MA:0002359
xref: ncithesaurus:Psoas_Minor
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001373
name: sartorius
alt_id: UBERON:FMA_22353-MA_0002368
def: "." [Wikipedia:Sartorius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sartorius" EXACT []
xref: BTO:0001215
xref: EHDAA:10583
xref: FMA:22353
xref: HOG:0001192
xref: MA:0002368
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001374
name: biceps femoris
alt_id: UBERON:FMA_22356-MA_0002270
def: "." [Wikipedia:Biceps_femoris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Biceps femoris" EXACT []
xref: BTO:0003418
xref: EFO:0001418
xref: FMA:22356
xref: galen:BicepsFemoris
xref: MA:0002270
xref: ncithesaurus:Biceps_Femoris
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001375
name: semitendinosus
alt_id: UBERON:FMA_22357-MA_0002375
def: "." [Wikipedia:Semitendinosus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Semitendinosus" EXACT []
synonym: "Semitendinosus muscle" EXACT []
synonym: "semitendinosus muscle" EXACT []
xref: BTO:0001236
xref: FMA:22357
xref: MA:0002375
xref: ncithesaurus:Semitendinosus
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001376
name: tensor fasciae latae
alt_id: UBERON:FMA_22423-MA_0002391
def: "." [Wikipedia:Tensor_fasciae_latae]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "tensor fasciae lata" EXACT []
synonym: "Tensor fasciae latae" EXACT []
synonym: "Tensor of fascia lata" EXACT []
synonym: "tensor of fascia lata" EXACT []
xref: FMA:22423
xref: MA:0002391
xref: ncithesaurus:Tensor_Fasciae_Lata
is_a: UBERON:0002000 ! gluteal muscle
[Term]
id: UBERON:0001377
name: quadriceps femoris
alt_id: UBERON:FMA_22428-MA_0002363
def: "." [Wikipedia:Quadriceps_femoris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Quadriceps" EXACT []
synonym: "quadriceps" EXACT []
synonym: "Quadriceps femoris" EXACT []
xref: BTO:0001149
xref: EFO:0001938
xref: EHDAA:8299
xref: FMA:22428
xref: HOG:0000828
xref: MA:0002363
xref: OpenCyc:Mx4rvVjd-JwpEbGdrcN5Y29ycA
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001378
name: rectus femoris
alt_id: UBERON:FMA_22430-MA_0002365
def: "." [Wikipedia:Rectus_femoris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Musculus rectos femoris" EXACT []
synonym: "musculus rectos femoris" EXACT []
synonym: "Rectus femoris" EXACT []
xref: BTO:0001564
xref: FMA:22430
xref: MA:0002365
xref: ncithesaurus:Rectus_Femoris
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0001377 ! quadriceps femoris
[Term]
id: UBERON:0001379
name: vastus lateralis
alt_id: UBERON:FMA_22431-MA_0002402
def: "." [Wikipedia:Vastus_lateralis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Vastus lateralis" EXACT []
xref: BTO:0001563
xref: EFO:0001937
xref: FMA:22431
xref: MA:0002402
xref: ncithesaurus:Vastus_Lateralis
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0001377 ! quadriceps femoris
[Term]
id: UBERON:0001380
name: vastus medialis
alt_id: UBERON:FMA_22432-MA_0002403
def: "." [Wikipedia:Vastus_medialis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Vastus medialis" EXACT []
xref: FMA:22432
xref: MA:0002403
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0001377 ! quadriceps femoris
[Term]
id: UBERON:0001381
name: semimembranosus
alt_id: UBERON:FMA_22438-MA_0002371
def: "." [Wikipedia:Semimembranosus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Semimembranosus" EXACT []
xref: BTO:0003177
xref: FMA:22438
xref: MA:0002371
xref: ncithesaurus:Semimembranosus
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001382
name: pectineus
alt_id: UBERON:FMA_22440-MA_0002353
def: "." [Wikipedia:Pectineus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pectineus" EXACT []
xref: FMA:22440
xref: MA:0002353
xref: ncithesaurus:Pectineus
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001383
name: muscle of leg
alt_id: UBERON:FMA_22471-MA_0000672
def: "." [Wikipedia:Leg_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Leg muscle" EXACT []
synonym: "leg muscle" EXACT []
synonym: "Muscle of leg" EXACT []
xref: BTO:0000722
xref: FMA:22471
xref: MA:0000672
is_a: UBERON:0003661 ! implied link automatically realized ! limb muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001384
name: primary motor cortex
alt_id: UBERON:FMA_224854-MA_0000907
def: "a brain region that in humans is located in the posterior portion of the frontal lobe. It works in association with pre-motor areas to plan and execute movements. M1 contains large neurons known as Betz cells which send long axons down the spinal cord to synapse onto alpha motor neurons which connect to the muscles. Pre-motor areas are involved in planning actions (in concert with the basal ganglia) and refining movements based upon sensory input (this requires the cerebellum). The human primary motor cortex is located in the dorsal part of the precentral gyrus and the anterior bank of the central sulcus. The precentral gyrus is in front of the postcentral gyrus from which it is separated by the central sulcus. Its anterior border is the precentral sulcus, while inferiorly it borders to the lateral fissure (Sylvian fissure). Medially, it is contiguous with the paracentral lobule." [Wikipedia:Primary_motor_cortex]
comment: TODO: in MA this is asserted to be part_of BOTH frontal and parietal cortex. FMA makes no commitment beyond cerebral cortex. Wikipedia says frontal lobe. Check if species difference or difference in definition
subset: uberon_slim
synonym: "Primary motor cortex" EXACT []
xref: EFO:0002472
xref: FMA:224854
xref: MA:0000907
is_a: UBERON:0003208
relationship: part_of UBERON:0001870 ! frontal lobe
relationship: part_of UBERON:0001872 ! parietal lobe
[Term]
id: UBERON:0001385
name: tibialis anterior
alt_id: UBERON:FMA_22532-MA_0002395
def: "." [Wikipedia:Tibialis_anterior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Tibialis anterior" EXACT []
synonym: "tibilais cranialis" EXACT []
xref: BTO:0001382
xref: FMA:22532
xref: MA:0002395
is_a: UBERON:0001383 ! muscle of leg
[Term]
id: UBERON:0001386
name: extensor digitorum longus
alt_id: UBERON:FMA_22534-MA_0002295
def: "." [Wikipedia:Extensor_digitorum_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Extensor digitorum longus" EXACT []
xref: BTO:0000436
xref: FMA:22534
xref: MA:0002295
xref: ncithesaurus:Extensor_Digitorum_Longus
is_a: UBERON:0001383 ! muscle of leg
[Term]
id: UBERON:0001387
name: fibularis longus
alt_id: UBERON:FMA_22539-MA_0002356
def: "." [Wikipedia:Fibularis_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Fibularis longus" EXACT []
synonym: "Peroneus longus" EXACT []
synonym: "peroneus longus" EXACT []
xref: FMA:22539
xref: MA:0002356
xref: ncithesaurus:Peroneus_Longus
is_a: UBERON:0001383 ! muscle of leg
[Term]
id: UBERON:0001388
name: gastrocnemius
alt_id: UBERON:FMA_22541-MA_0002306
def: "." [Wikipedia:Gastrocnemius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Gastrocnemius" EXACT []
synonym: "M.gastrocnemius" EXACT []
synonym: "m.gastrocnemius" EXACT []
xref: BTO:0000506
xref: EFO:0001413
xref: EHDAA:8293
xref: FMA:22541
xref: galen:Gastrocnemius
xref: HOG:0001193
xref: MA:0002306
is_a: UBERON:0001383 ! muscle of leg
relationship: part_of UBERON:0001665 ! triceps surae
[Term]
id: UBERON:0001389
name: soleus
alt_id: UBERON:FMA_22542-MA_0002424
def: "a powerful muscle in the back part of the lower leg (the calf). It runs from just below the knee to the heel, and is involved in standing and walking. It is closely connected to the gastrocnemius muscle and some anatomists consider them to be a single muscle, the triceps surae. Its name is derived from the solefish whose shape it resembles. The soleus is located in the superficial posterior compartment of the leg. Not all mammals have a soleus muscle; one familiar species that lacks the soleus is the dog." [Wikipedia:Soleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Soleus" EXACT []
xref: BTO:0001265
xref: FMA:22542
xref: MA:0002424
xref: ncithesaurus:Soleus
is_a: UBERON:0001383 ! muscle of leg
relationship: part_of UBERON:0001665 ! triceps surae
[Term]
id: UBERON:0001390
name: sural artery
alt_id: UBERON:FMA_22570-MA_0002058
def: "." [Wikipedia:Sural_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sural artery" EXACT []
xref: FMA:22570
xref: MA:0002058
xref: ncithesaurus:External_Sural_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001391
name: popliteus
alt_id: UBERON:FMA_22590-MA_0002554
def: "." [Wikipedia:Popliteus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "M.popliteus" EXACT []
synonym: "m.popliteus" EXACT []
synonym: "Popliteal muscle" EXACT []
synonym: "popliteal muscle" EXACT []
synonym: "Popliteus" EXACT []
xref: FMA:22590
xref: MA:0002554
is_a: UBERON:0001383 ! muscle of leg
[Term]
id: UBERON:0001392
name: flexor hallucis longus
alt_id: UBERON:FMA_22593-MA_0002301
def: "." [Wikipedia:Flexor_hallucis_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Flexor hallucis longus" EXACT []
xref: FMA:22593
xref: MA:0002301
xref: ncithesaurus:Flexor_Hallucis_Longus
is_a: UBERON:0001383 ! muscle of leg
[Term]
id: UBERON:0001393
name: auditory cortex
alt_id: UBERON:FMA_226221-MA_0000942
def: "." [Wikipedia:Auditory_cortex]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Auditory cortex" EXACT []
xref: FMA:226221
xref: GAID:682
xref: MA:0000942
xref: ncithesaurus:Auditory_Cortex
is_a: UBERON:0003208
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0001394
name: axillary artery
alt_id: UBERON:FMA_22654-MA_0002573
def: "." [Wikipedia:Axillary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Axillary artery" EXACT []
synonym: "Axillary part of trunk of subclavian artery" EXACT []
synonym: "axillary part of trunk of subclavian artery" EXACT []
xref: FMA:22654
xref: GAID:473
xref: galen:AxillaryArtery
xref: MA:0002573
xref: ncithesaurus:Axillary_Artery
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001009 ! circulatory system
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001395
name: thoraco-acromial artery
alt_id: UBERON:FMA_22671-MA_0002064
def: "." [Wikipedia:Thoraco-acromial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Acromiothoracic artery" EXACT []
synonym: "acromiothoracic artery" EXACT []
synonym: "Thoraco-acromial artery" EXACT []
synonym: "Thoracoacromial artery" EXACT []
synonym: "thoracoacromial artery" EXACT []
xref: FMA:22671
xref: MA:0002064
xref: ncithesaurus:Acromial_Thoracic_Artery
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003506 ! implied link automatically realized ! chest blood vessel
is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001396
name: lateral thoracic artery
alt_id: UBERON:FMA_22674-MA_0001989
def: "." [Wikipedia:Lateral_thoracic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "External mammary artery" EXACT []
synonym: "external mammary artery" EXACT []
synonym: "Lateral thoracic artery" EXACT []
xref: FMA:22674
xref: MA:0001989
xref: ncithesaurus:Lateral_Thoracic_Artery
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003506 ! implied link automatically realized ! chest blood vessel
is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001397
name: subscapular artery
alt_id: UBERON:FMA_22677-MA_0002050
def: "." [Wikipedia:Subscapular_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Subscapular artery" EXACT []
xref: FMA:22677
xref: MA:0002050
xref: ncithesaurus:Subscapular_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001398
name: brachial artery
alt_id: UBERON:FMA_22689-MA_0001921
def: "." [Wikipedia:Brachial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Brachial artery" EXACT []
synonym: "Brachial part of trunk of subclavian artery" EXACT []
synonym: "brachial part of trunk of subclavian artery" EXACT []
xref: FMA:22689
xref: GAID:475
xref: galen:BrachialArtery
xref: MA:0001921
xref: ncithesaurus:Brachial_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001399
name: deep brachial artery
alt_id: UBERON:FMA_22695-MA_0002026
def: "." [Wikipedia:Deep_brachial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Deep brachial artery" EXACT []
synonym: "Profunda brachii artery" EXACT []
synonym: "profunda brachii artery" EXACT []
xref: FMA:22695
xref: MA:0002026
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0001400
name: iliocostalis thoracis
alt_id: UBERON:FMA_22703-MA_0002320
def: "." [Wikipedia:Iliocostalis_thoracis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Iliocostalis thoracis" EXACT []
xref: FMA:22703
xref: MA:0002320
is_a: UBERON:0002251 ! iliocostalis
[Term]
id: UBERON:0001401
name: longissimus thoracis
alt_id: UBERON:FMA_22709-MA_0002339
def: "." [Wikipedia:Longissimus_thoracis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Longissimus thoracis" EXACT []
xref: BTO:0001651
xref: FMA:22709
xref: MA:0002339
xref: ncithesaurus:Longissimus_Thoracis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001402
name: longissimus cervicis
alt_id: UBERON:FMA_22711-MA_0002337
def: "." [Wikipedia:Longissimus_cervicis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Longissimus cervicis" EXACT []
xref: BTO:0001650
xref: FMA:22711
xref: MA:0002337
xref: ncithesaurus:Longissimus_Cervicis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001403
name: longissimus capitis
alt_id: UBERON:FMA_22714-MA_0002336
def: "." [Wikipedia:Longissimus_capitis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Longissimus capitis" EXACT []
xref: BTO:0001649
xref: FMA:22714
xref: MA:0002336
xref: ncithesaurus:Longissimus_Capitis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001404
name: radial artery
alt_id: UBERON:FMA_22730-MA_0002034
def: "." [Wikipedia:Radial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Radial artery" EXACT []
xref: FMA:22730
xref: GAID:506
xref: MA:0002034
xref: ncithesaurus:Radial_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001405
name: spinalis thoracis
alt_id: UBERON:FMA_22765-MA_0002381
def: "." [Wikipedia:Spinalis_thoracis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Spinalis thoracis" EXACT []
xref: FMA:22765
xref: MA:0002381
xref: ncithesaurus:Spinalis_Thoracis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001406
name: ulnar artery
alt_id: UBERON:FMA_22796-MA_0002069
def: "." [Wikipedia:Ulnar_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ulnar artery" EXACT []
xref: FMA:22796
xref: GAID:515
xref: MA:0002069
xref: ncithesaurus:Ulnar_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001407
name: semispinalis thoracis
alt_id: UBERON:FMA_22828-MA_0002374
def: "." [Wikipedia:Semispinalis_thoracis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Semispinalis thoracis" EXACT []
xref: FMA:22828
xref: MA:0002374
xref: ncithesaurus:Semispinalis_Thoracis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001408
name: semispinalis cervicis
alt_id: UBERON:FMA_22829-MA_0002373
def: "." [Wikipedia:Semispinalis_cervicis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Semispinalis cervicis" EXACT []
xref: FMA:22829
xref: MA:0002373
xref: ncithesaurus:Semispinalis_Cervicis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001409
name: semispinalis capitis
alt_id: UBERON:FMA_22830-MA_0002372
def: "." [Wikipedia:Semispinalis_capitis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Semispinalis capitis" EXACT []
xref: FMA:22830
xref: MA:0002372
xref: ncithesaurus:Semispinalis_Capitis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001410
name: common palmar digital artery
alt_id: UBERON:FMA_22852-MA_0001957
def: "." [Wikipedia:Common_palmar_digital_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "common palmar digital arteries" EXACT []
synonym: "Common palmar digital artery" EXACT []
xref: FMA:22852
xref: MA:0001957
xref: ncithesaurus:Common_Palmar_Digital_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001411
name: basilic vein
alt_id: UBERON:FMA_22908-MA_0002086
def: "." [Wikipedia:Basilic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Basilic vein" EXACT []
synonym: "Basilic vein of forearm" EXACT []
synonym: "basilic vein of forearm" EXACT []
xref: FMA:22908
xref: galen:BasilicVein
xref: MA:0002086
xref: ncithesaurus:Basilic_Vein
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0001412
name: common palmar digital vein
alt_id: UBERON:FMA_22923-MA_0002121
comment: This class was created automatically from a combination of ontologies
synonym: "Common palmar digital vein" EXACT []
xref: FMA:22923
xref: MA:0002121
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001413
name: brachial vein
alt_id: UBERON:FMA_22934-MA_0002087
def: "." [Wikipedia:Brachial_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Brachial vein" EXACT []
xref: FMA:22934
xref: galen:BrachialVein
xref: MA:0002087
xref: ncithesaurus:Brachial_Vein
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0001414
name: median cubital vein
alt_id: UBERON:FMA_22963-MA_0002176
def: "." [Wikipedia:Median_cubital_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Median cubital vein" EXACT []
xref: FMA:22963
xref: MA:0002176
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001415
name: skin of pelvis
alt_id: UBERON:FMA_22984-MA_0000546
comment: This class was created automatically from a combination of ontologies
synonym: "Pelvic skin" EXACT []
synonym: "pelvic skin" EXACT []
synonym: "pelvis skin" EXACT []
synonym: "Skin of pelvis" EXACT []
xref: FMA:22984
xref: MA:0000546
is_a: UBERON:0001085 ! skin of trunk
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002355 ! pelvis
relationship: part_of UBERON:0001085 ! skin of trunk
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0001416
name: skin of abdomen
alt_id: UBERON:FMA_22988-MA_0000523
comment: This class was created automatically from a combination of ontologies
synonym: "abdomen skin" EXACT []
synonym: "Abdominal skin" EXACT []
synonym: "abdominal skin" EXACT []
synonym: "Skin of abdomen" EXACT []
xref: EFO:0000214
xref: FMA:22988
xref: FMA:23000
xref: MA:0000523
xref: ncithesaurus:Abdominal_Skin
is_a: UBERON:0001085 ! skin of trunk
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0001417
name: skin of neck
alt_id: UBERON:FMA_23021-MA_0000590
comment: This class was created automatically from a combination of ontologies
synonym: "Neck skin" EXACT []
synonym: "neck skin" EXACT []
synonym: "Skin of neck" EXACT []
xref: FMA:23021
xref: FMA:23022
xref: MA:0000590
xref: ncithesaurus:Neck_Skin
is_a: UBERON:0000014 ! zone of skin
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0001418
name: skin of thorax
alt_id: UBERON:FMA_23028-MA_0000564
comment: This class was created automatically from a combination of ontologies
synonym: "Skin of thorax" EXACT []
synonym: "Thoracic skin" EXACT []
synonym: "thoracic skin" EXACT []
synonym: "thorax skin" EXACT []
synonym: "upper body skin" RELATED []
xref: FMA:23028
xref: FMA:23029
xref: MA:0000564
is_a: UBERON:0001085 ! skin of trunk
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000915 ! thorax
relationship: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0001419
name: skin of limb
alt_id: UBERON:FMA_23100-MA_0000694
comment: This class was created automatically from a combination of ontologies
synonym: "Limb skin" EXACT []
synonym: "limb skin" EXACT []
synonym: "Skin of limb" EXACT []
xref: FMA:23100
xref: MA:0000694
is_a: UBERON:0000014 ! zone of skin
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0001420
name: subscapular vein
alt_id: UBERON:FMA_23113-MA_0002224
comment: This class was created automatically from a combination of ontologies
synonym: "Subscapular vein" EXACT []
xref: FMA:23113
xref: MA:0002224
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001421
name: pectoral girdle
alt_id: UBERON:FMA_23217-MA_0000292-MIAA_0000181-XAO_0003063-ZFA_0000407
def: "Subdivision of free upper limb, which is the proximal segment of an upper limb and links the free upper limb to the trunk; it is demarcated by the plane of the surface of the glenoid fossa from the free upper limb; together with the free upper limb, it constitutes the upper limb. Examples: There are only two instances, right and left pectoral girdles. // Arched skeletal structure that supports the forelimbs, the rudiments of which can be distinguished in mesenchyme at NF stage 51, and is complete by NF stage 60." [ISBN:0471209627, NLM:pectoral+girdle, Wikipedia:Pectoral_girdle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "girdle - pectoral" EXACT []
synonym: "Pectoral girdle" EXACT []
synonym: "pectoral girdle bone" EXACT []
synonym: "shoulder bones" RELATED []
synonym: "Shoulder girdle" EXACT []
synonym: "shoulder girdle" RELATED []
synonym: "Upper limb girdle" EXACT []
synonym: "upper limb girdle" EXACT []
xref: AAO:0000422
xref: EFO:0000946
xref: FMA:23217
xref: HOG:0001156
xref: MA:0000292
xref: MAT:0000181
xref: MIAA:0000181
xref: ncithesaurus:Shoulder_Girdle
xref: TAO:0000407
xref: XAO:0003063
xref: ZFA:0000407
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0001422
name: facial lymphatic vessel
alt_id: UBERON:FMA_233946-ZFA_0005108
comment: This class was created automatically from a combination of ontologies
synonym: "Buccal lymphatic vessel" EXACT []
synonym: "buccal lymphatic vessel" EXACT []
synonym: "Facial lymphatic vessel" EXACT []
synonym: "FL" RELATED []
xref: FMA:233946
xref: TAO:0005108
xref: ZFA:0005108
is_a: UBERON:0001473 ! lymphatic vessel
intersection_of: UBERON:0001473 ! lymphatic vessel
intersection_of: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0001423
name: radius
alt_id: UBERON:FMA_23463-MA_0001357
def: "." [Wikipedia:Radius_(bone)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Radius" EXACT []
xref: AAO:0000788
xref: FMA:23463
xref: GAID:185
xref: MA:0001357
xref: ncithesaurus:Radius
is_a: UBERON:0001440 ! skeleton of upper limb
relationship: part_of UBERON:0002386 ! lower segment of arm
[Term]
id: UBERON:0001424
name: ulna
alt_id: UBERON:FMA_23466-MA_0001358
def: "." [Wikipedia:Ulna]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ulna" EXACT []
xref: AAO:0000789
xref: FMA:23466
xref: GAID:188
xref: MA:0001358
xref: ncithesaurus:Ulna
is_a: UBERON:0001440 ! skeleton of upper limb
relationship: part_of UBERON:0002386 ! lower segment of arm
[Term]
id: UBERON:0001425
name: pectoral lymphatic vessel
alt_id: UBERON:FMA_234865-ZFA_0005107
comment: This class was created automatically from a combination of ontologies
synonym: "Pectoral lymphatic vessel" EXACT []
synonym: "PL" RELATED []
xref: FMA:234865
xref: TAO:0005107
xref: ZFA:0005107
is_a: UBERON:0001473 ! lymphatic vessel
[Term]
id: UBERON:0001426
name: jugular lymphatic vessel
alt_id: UBERON:FMA_234908-ZFA_0005109
comment: This class was created automatically from a combination of ontologies
synonym: "JL" RELATED []
synonym: "Jugular lymphatic vessel" EXACT []
xref: FMA:234908
xref: TAO:0005109
xref: ZFA:0005109
is_a: UBERON:0001473 ! lymphatic vessel
[Term]
id: UBERON:0001427
name: scaphoid
alt_id: UBERON:FMA_23709-MA_0002555
def: "." [Wikipedia:Scaphoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Navicular bone of hand" EXACT []
synonym: "navicular bone of hand" EXACT []
synonym: "navicular of hand" RELATED []
synonym: "radial carpal bone" RELATED []
synonym: "Scaphoid" EXACT []
synonym: "Scaphoid bone" EXACT []
synonym: "scaphoid bone" EXACT []
xref: FMA:23709
xref: GAID:180
xref: MA:0002555
xref: ncithesaurus:Scaphoid_Bone
is_a: UBERON:0001480 ! proximal carpal bone
relationship: part_of UBERON:0001462 ! wrist
relationship: part_of UBERON:0001480 ! proximal carpal bone
[Term]
id: UBERON:0001428
name: lunate
alt_id: UBERON:FMA_23712-MA_0002556
def: "." [Wikipedia:Lunate]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Intermediate carpal bone" EXACT []
synonym: "intermediate carpal bone" RELATED []
synonym: "Lunate" EXACT []
synonym: "Lunate bone" EXACT []
synonym: "lunate bone" EXACT []
synonym: "semilunar" RELATED []
synonym: "Semilunar bone" EXACT []
synonym: "semilunar bone" EXACT []
xref: FMA:23712
xref: GAID:181
xref: MA:0002556
xref: ncithesaurus:Lunate_Bone
is_a: UBERON:0001480 ! proximal carpal bone
relationship: part_of UBERON:0001462 ! wrist
relationship: part_of UBERON:0001480 ! proximal carpal bone
[Term]
id: UBERON:0001429
name: pisiform
alt_id: UBERON:FMA_23718-MA_0001339
def: "." [Wikipedia:Pisiform]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "accessory carpal bone" RELATED []
synonym: "Pisiform" EXACT []
synonym: "Pisiform bone" EXACT []
synonym: "pisiform bone" EXACT []
xref: FMA:23718
xref: MA:0001339
xref: ncithesaurus:Pisiform_Bone
is_a: UBERON:0001480 ! proximal carpal bone
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001430
name: trapezium
alt_id: UBERON:FMA_23721-MA_0001340
def: "." [Wikipedia:Trapezium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Greater multangular bone" EXACT []
synonym: "greater multangular bone" EXACT []
synonym: "greater multiangular" RELATED []
synonym: "hand distal carpal bone 1" RELATED []
synonym: "Trapezial bone" EXACT []
synonym: "trapezial bone" EXACT []
synonym: "Trapezium" EXACT []
synonym: "Trapezium bone" EXACT []
synonym: "trapezium bone" EXACT []
xref: FMA:23721
xref: MA:0001340
xref: ncithesaurus:Trapezial_Bone
xref: OpenCyc:Mx4rv3CbrJwpEbGdrcN5Y29ycA
is_a: UBERON:0001481 ! distal carpal bone
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001431
name: trapezoid
alt_id: UBERON:FMA_23724-MA_0001341
def: "." [Wikipedia:Trapezoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hand distal carpal bone 2" RELATED []
synonym: "Lesser multangular bone" EXACT []
synonym: "lesser multangular bone" EXACT []
synonym: "lesser multiangular" RELATED []
synonym: "Trapezoid" EXACT []
synonym: "Trapezoid bone" EXACT []
synonym: "trapezoid bone" EXACT []
xref: FMA:23724
xref: MA:0001341
xref: ncithesaurus:Trapezoid_Bone
xref: OpenCyc:Mx4rvVvsjpwpEbGdrcN5Y29ycA
is_a: UBERON:0001481 ! distal carpal bone
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001432
name: capitate
alt_id: UBERON:FMA_23727-MA_0001342
def: "." [Wikipedia:Capitate]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Capitate" EXACT []
synonym: "Capitate bone" EXACT []
synonym: "capitate bone" EXACT []
synonym: "hand distal carpal bone 3" RELATED []
synonym: "Os Magnum (Carpus)" EXACT []
synonym: "os magnum (carpus)" EXACT []
xref: FMA:23727
xref: galen:Capitate
xref: MA:0001342
xref: ncithesaurus:Capitate_Bone
xref: OpenCyc:Mx4rvZFPrZwpEbGdrcN5Y29ycA
is_a: UBERON:0001481 ! distal carpal bone
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001433
name: hamate
alt_id: UBERON:FMA_23730-MA_0001343
def: "." [Wikipedia:Hamate]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hamate" EXACT []
synonym: "Hamate bone" EXACT []
synonym: "hamate bone" EXACT []
synonym: "hand distal carpal bone 4" RELATED []
synonym: "unciform" RELATED []
synonym: "Unciform bone" EXACT []
synonym: "unciform bone" EXACT []
synonym: "uncinate" RELATED []
xref: FMA:23730
xref: galen:Hamate
xref: MA:0001343
xref: ncithesaurus:Hamate_Bone
is_a: UBERON:0001481 ! distal carpal bone
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001434
name: skeleton
alt_id: UBERON:FMA_23875-FMA_23881-MA_0000018-MIAA_0000032-XAO_0003060-ZFA_0000434
def: "Set of organ system subdivision which consists of all the bones in the body. // Anatomical system that provides physical support to the organism." [AAO:0000566, Wikipedia:Skeleton]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "set of all bones" EXACT []
synonym: "set of bones of body" EXACT []
synonym: "skeletal system" EXACT []
synonym: "skeleton component" RELATED []
synonym: "skeleton system" EXACT []
xref: AAO:0000566
xref: BTO:0001486
xref: EFO:0000806
xref: EHDAA:5047
xref: EHDAA:8005
xref: EHDAA:8041
xref: FMA:23875
xref: FMA:23881
xref: GAID:177
xref: HOG:0001254
xref: MA:0000018
xref: MAT:0000032
xref: MIAA:0000032
xref: ncithesaurus:Skeletal_System
xref: OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA
xref: TAO:0000434
xref: XAO:0003060
xref: ZFA:0000434
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001474 ! bone
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
relationship: part_of UBERON:0002204 ! musculoskeletal system
relatiosnhip: has_part UBERON:0001474
[Term]
id: UBERON:0001435
name: carpal bone
alt_id: UBERON:FMA_23889-MA_0000296
def: "." [Wikipedia:Carpal_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bone of carpus" EXACT []
synonym: "bone of carpus" EXACT []
synonym: "Carpal bone" EXACT []
xref: FMA:23889
xref: GAID:179
xref: galen:CarpalBone
xref: MA:0000296
xref: ncithesaurus:Carpal_Bone
is_a: UBERON:0001442 ! skeleton of hand
[Term]
id: UBERON:0001436
name: phalanx of finger
alt_id: UBERON:FMA_23914-MA_0000306
def: "a phalanx that is part of a finger[Obol]." [Obol:obol]
comment: This class was created automatically from a combination of ontologies
synonym: "Hand phalanx" EXACT []
synonym: "hand phalanx" EXACT []
synonym: "Phalanx of finger" EXACT []
synonym: "Phalanx of hand" EXACT []
synonym: "phalanx of hand" EXACT []
xref: FMA:23914
xref: MA:0000306
xref: ncithesaurus:Hand_Phalanx
is_a: UBERON:0003221 ! phalanx
is_a: UBERON:0003460 ! implied link automatically realized ! arm bone
is_a: UBERON:0003607 ! implied link automatically realized ! forelimb long bone
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0002389 ! finger
relationship: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0001437
name: epiphysis
alt_id: UBERON:FMA_24012-ZFA_0000019
def: "Subdivision of long bone which forms its expanded proximal or distal articular end; together with other the subdivisions of long bone, it constitutes the long bone. Examples: proximal epiphysis of humerus, distal epiphysis of femur." [Wikipedia:Epiphysis, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "End of long bone" EXACT []
synonym: "end of long bone" EXACT []
synonym: "Epiphysis" EXACT []
synonym: "pineal gland" RELATED []
xref: AAO:0000742
xref: BTO:0000413
xref: FMA:24012
xref: TAO:0000019
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0001474 ! bone
[Term]
id: UBERON:0001438
name: metaphysis
alt_id: UBERON:FMA_24014-MA_0001363
def: "Subdivision of diaphysis which forms the proximal or distal end of diaphysis next to the epiphysis; together with diaphysis proper, it constitutes the diaphysis. Examples: proximal metaphysis of humerus, distal metaphysis of femur." [Wikipedia:Metaphysis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Diaphyseal end of long bone" EXACT []
synonym: "diaphyseal end of long bone" EXACT []
synonym: "long bone metaphysis" EXACT []
synonym: "Metaphysis" EXACT []
xref: FMA:24014
xref: MA:0001363
xref: ncithesaurus:Metaphysis
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002428 ! limb bone
[Term]
id: UBERON:0001439
name: compact bone
alt_id: UBERON:FMA_24018-MA_0001461
def: "." [Wikipedia:Compact_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Compact bone" EXACT []
synonym: "Compact bone tissue" EXACT []
synonym: "compact bone tissue" EXACT []
synonym: "Cortical bone" EXACT []
synonym: "cortical bone" EXACT []
synonym: "Substantia compacta (Pars ossea)" EXACT []
synonym: "substantia compacta (pars ossea)" EXACT []
xref: FMA:24018
xref: galen:CorticalBone
xref: MA:0001461
xref: ncithesaurus:Cortical_Bone
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001474 ! bone
[Term]
id: UBERON:0001440
name: skeleton of upper limb
alt_id: UBERON:FMA_24139-MA_0000612
comment: This class was created automatically from a combination of ontologies
synonym: "Bones of upper limb" EXACT []
synonym: "bones of upper limb" EXACT []
synonym: "forelimb bone" EXACT []
synonym: "Set of bones of upper limb" EXACT []
synonym: "set of bones of upper limb" EXACT []
synonym: "Skeleton of upper limb" EXACT []
synonym: "Upper limb skeleton" EXACT []
synonym: "upper limb skeleton" EXACT []
xref: FMA:24139
xref: MA:0000612
is_a: UBERON:0000075 ! subdivision of skeleton
intersection_of: UBERON:0000075 ! subdivision of skeleton
intersection_of: part_of UBERON:0002102 ! forelimb
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0001441
name: skeleton of lower limb
alt_id: UBERON:FMA_24140-MA_0000670
def: "." [Wikipedia:Leg_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bones of lower limb" EXACT []
synonym: "bones of lower limb" EXACT []
synonym: "leg bone" EXACT []
synonym: "Lower limb skeleton" EXACT []
synonym: "lower limb skeleton" EXACT []
synonym: "Set of bones of lower limb" EXACT []
synonym: "set of bones of lower limb" EXACT []
synonym: "Skeleton of lower limb" EXACT []
xref: FMA:24140
xref: GAID:198
xref: MA:0000670
xref: OpenCyc:Mx4rvZcKkZwpEbGdrcN5Y29ycA
is_a: UBERON:0002091 ! implied link automatically realized ! appendicular skeleton
intersection_of: UBERON:0000075 ! subdivision of skeleton
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: has_part UBERON:0002428 ! limb bone
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001442
name: skeleton of hand
alt_id: UBERON:FMA_24159-MA_0000619
comment: This class was created automatically from a combination of ontologies
synonym: "Bones of hand" EXACT []
synonym: "bones of hand" EXACT []
synonym: "hand bone" EXACT []
synonym: "Hand skeleton" EXACT []
synonym: "hand skeleton" EXACT []
synonym: "Set of bones of hand" EXACT []
synonym: "set of bones of hand" EXACT []
synonym: "Skeleton of hand" EXACT []
xref: FMA:24159
xref: MA:0000619
xref: OpenCyc:Mx4rvdHPJJwpEbGdrcN5Y29ycA
is_a: UBERON:0001440 ! skeleton of upper limb
intersection_of: UBERON:0000075 ! subdivision of skeleton
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0001443
name: chest
alt_id: UBERON:FMA_24216-MA_0000031
def: "Subdivision of thorax, which is the anterolateral part of the thorax and is demarcated from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the back of the thorax, it constitutes the thorax. Examples: There is only one chest." [Wikipedia:Chest]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anterior thoracic region" EXACT []
synonym: "anterior thoracic region" EXACT []
synonym: "Anterolateral part of thorax" EXACT []
synonym: "anterolateral part of thorax" EXACT []
synonym: "Chest" EXACT []
synonym: "Front of thorax" EXACT []
synonym: "front of thorax" EXACT []
synonym: "thoracic body wall" RELATED []
xref: EFO:0000965
xref: FMA:24216
xref: FMA:24816
xref: galen:Chest
xref: MA:0000031
xref: ncithesaurus:Chest
xref: OpenCyc:Mx4rvVikFZwpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0001444
name: subdivision of head
alt_id: UBERON:FMA_24218-XAO_0000040
comment: This class was created automatically from a combination of ontologies
synonym: "Head region" EXACT []
synonym: "head region" EXACT []
synonym: "Head subdivision" EXACT []
synonym: "head subdivision" EXACT []
synonym: "Region of head" EXACT []
synonym: "region of head" EXACT []
synonym: "Subdivision of head" EXACT []
xref: FMA:24218
xref: XAO:0000040
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0001445
name: skeleton of foot
alt_id: UBERON:FMA_24222-MA_0000643
comment: This class was created automatically from a combination of ontologies
synonym: "foot bone" EXACT []
synonym: "Foot skeleton" EXACT []
synonym: "foot skeleton" EXACT []
synonym: "Set of bones of foot" EXACT []
synonym: "set of bones of foot" EXACT []
synonym: "Skeleton of foot" EXACT []
xref: FMA:24222
xref: GAID:192
xref: MA:0000643
xref: ncithesaurus:Foot_Bone
is_a: UBERON:0001441 ! implied link automatically realized ! skeleton of lower limb
intersection_of: UBERON:0000075 ! subdivision of skeleton
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0001446
name: fibula
alt_id: UBERON:FMA_24479-MA_0001360
def: "." [Wikipedia:Fibula]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Fibula" EXACT []
xref: AAO:0000891
xref: BTO:0002346
xref: FMA:24479
xref: GAID:202
xref: galen:Fibula
xref: MA:0001360
xref: ncithesaurus:Fibula
is_a: UBERON:0001441 ! skeleton of lower limb
[Term]
id: UBERON:0001447
name: tarsal bone
alt_id: UBERON:FMA_24491-MA_0000297
def: "." [Wikipedia:Ankle_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ankle bone" EXACT []
synonym: "ankle bone" EXACT []
synonym: "Bone of ankle" EXACT []
synonym: "bone of ankle" EXACT []
synonym: "Bone of tarsus" EXACT []
synonym: "bone of tarsus" EXACT []
synonym: "Tarsal bone" EXACT []
xref: BTO:0002343
xref: FMA:24491
xref: GAID:194
xref: MA:0000297
xref: ncithesaurus:Tarsal_Bone
is_a: UBERON:0001445 ! skeleton of foot
is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002388 ! ankle
[Term]
id: UBERON:0001448
name: metatarsal bone
alt_id: UBERON:FMA_24492-MA_0000303
def: "." [Wikipedia:Metatarsal_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Metatarsal bone" EXACT []
xref: BTO:0002347
xref: FMA:24492
xref: GAID:193
xref: MA:0000303
xref: ncithesaurus:Metatarsal_Bone
is_a: UBERON:0001445 ! skeleton of foot
is_a: UBERON:0003821 ! metacarpal/metatarsal bone
relationship: part_of UBERON:0000983 ! metatarsus
[Term]
id: UBERON:0001449
name: phalanx of toe
alt_id: UBERON:FMA_24493-MA_0000305
comment: This class was created automatically from a combination of ontologies
synonym: "phalanx of foot digit 1" EXACT []
xref: FMA:24493
xref: MA:0001381
is_a: UBERON:0003221 ! phalanx
is_a: UBERON:0003608 ! implied link automatically realized ! hindlimb long bone
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0001466 ! toe
relationship: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0001450
name: calcaneus
alt_id: UBERON:FMA_24496-MA_0001348
def: "." [Wikipedia:Calcaneus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "calcaneum" EXACT []
synonym: "Calcaneus" EXACT []
synonym: "fibulare" RELATED []
synonym: "Os calcis" EXACT []
synonym: "os calcis" EXACT []
xref: FMA:24496
xref: galen:Calcaneum
xref: MA:0001348
xref: ncithesaurus:Calcaneum
is_a: UBERON:0001447 ! tarsal bone
[Term]
id: UBERON:0001451
name: navicular bone of foot
alt_id: UBERON:FMA_24499-MA_0001349
def: "." [Wikipedia:Navicular]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "central tarsal bone" RELATED []
synonym: "centrale" RELATED []
synonym: "Navicular" EXACT []
synonym: "navicular" EXACT []
synonym: "Navicular bone of foot" EXACT []
synonym: "Navicular of foot" EXACT []
synonym: "navicular of foot" EXACT []
xref: FMA:24499
xref: MA:0001349
xref: OpenCyc:Mx4rv67esJwpEbGdrcN5Y29ycA
is_a: UBERON:0001447 ! tarsal bone
[Term]
id: UBERON:0001452
name: medial cuneiform bone
alt_id: UBERON:FMA_24518-MA_0001352
def: "." [Wikipedia:Medial_cuneiform_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "First cuneiform bone" EXACT []
synonym: "first cuneiform bone" EXACT []
synonym: "foot distal carpal bone 1" RELATED []
synonym: "Medial cuneiform" EXACT []
synonym: "medial cuneiform" EXACT []
synonym: "Medial cuneiform bone" EXACT []
xref: BTO:0002360
xref: FMA:24518
xref: MA:0001352
xref: OpenCyc:Mx4rvYtfH5wpEbGdrcN5Y29ycA
is_a: UBERON:0001447 ! tarsal bone
[Term]
id: UBERON:0001453
name: intermediate cuneiform bone
alt_id: UBERON:FMA_24519-MA_0001353
def: "." [Wikipedia:Intermediate_cuneiform_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "foot distal carpal bone 2" RELATED []
synonym: "Intermediate cuneiform" EXACT []
synonym: "intermediate cuneiform" EXACT []
synonym: "Intermediate cuneiform bone" EXACT []
synonym: "Middle cuneiform" EXACT []
synonym: "middle cuneiform" EXACT []
synonym: "Second cuneiform bone" EXACT []
synonym: "second cuneiform bone" EXACT []
synonym: "Second cuneiform bone of foot" EXACT []
synonym: "second cuneiform bone of foot" EXACT []
xref: BTO:0002359
xref: FMA:24519
xref: galen:IntermediateCuneiform
xref: MA:0001353
is_a: UBERON:0001447 ! tarsal bone
[Term]
id: UBERON:0001454
name: lateral cuneiform bone
alt_id: UBERON:FMA_24520-MA_0001354
def: "." [Wikipedia:Lateral_cuneiform_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "foor distal carpal bone 3" RELATED []
synonym: "Lateral cuneiform" EXACT []
synonym: "lateral cuneiform" EXACT []
synonym: "Lateral cuneiform bone" EXACT []
synonym: "Third cuneiform bone" EXACT []
synonym: "third cuneiform bone" EXACT []
xref: BTO:0002358
xref: FMA:24520
xref: galen:LateralCuneiform
xref: MA:0001354
is_a: UBERON:0001447 ! tarsal bone
[Term]
id: UBERON:0001455
name: cuboid bone
alt_id: UBERON:FMA_24527-MA_0001355
def: "." [Wikipedia:Cuboid_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cuboid" EXACT []
synonym: "cuboid" EXACT []
synonym: "Cuboid bone" EXACT []
synonym: "foot distal carpal bone 4 and 5" RELATED []
xref: BTO:0002357
xref: FMA:24527
xref: galen:Cuboid
xref: MA:0001355
xref: ncithesaurus:Cuboid_Bone
is_a: UBERON:0001447 ! tarsal bone
[Term]
id: UBERON:0001456
name: face
alt_id: UBERON:FMA_24728-MA_0002473
def: "Subdivision of head which consists of the viscerocranium and all layers superficial to it. Examples: There is only one face." [Wikipedia:Face]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Face" EXACT []
xref: BTO:0003369
xref: FMA:24728
xref: GAID:64
xref: galen:Face
xref: HAO:0000316
xref: MA:0002473
xref: ncithesaurus:Face
xref: OpenCyc:Mx4rvVi5GZwpEbGdrcN5Y29ycA
is_a: UBERON:0001444 ! subdivision of head
[Term]
id: UBERON:0001457
name: skin of eyelid
alt_id: UBERON:FMA_24760-MA_0001256
comment: This class was created automatically from a combination of ontologies
synonym: "Eyelid skin" EXACT []
synonym: "eyelid skin" EXACT []
synonym: "Skin of eyelid" EXACT []
xref: FMA:24760
xref: MA:0001256
xref: ncithesaurus:Eyelid_Skin
is_a: UBERON:0000014 ! zone of skin
is_a: UBERON:0001084 ! implied link automatically realized ! skin of head
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001711 ! eyelid
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0001458
name: skin of lip
alt_id: UBERON:FMA_24764-MA_0001579
comment: This class was created automatically from a combination of ontologies
synonym: "Lip skin" EXACT []
synonym: "lip skin" EXACT []
synonym: "Skin of lip" EXACT []
xref: FMA:24764
xref: MA:0001579
is_a: UBERON:0000014 ! zone of skin
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001833 ! lip
[Term]
id: UBERON:0001459
name: skin of external ear
alt_id: UBERON:FMA_24775-MA_0001233
comment: This class was created automatically from a combination of ontologies
synonym: "ear skin" EXACT []
synonym: "External ear skin" EXACT []
synonym: "external ear skin" EXACT []
synonym: "Skin of external ear" EXACT []
xref: FMA:24775
xref: MA:0001233
xref: ncithesaurus:Ear_Skin
is_a: UBERON:0000014 ! zone of skin
is_a: UBERON:0001084 ! implied link automatically realized ! skin of head
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001691 ! external ear
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0001460
name: arm
alt_id: UBERON:FMA_24890-MA_0000033
def: "In humans, the arms are the two upper limbs of the body from the shoulder to the hand[GO]." [Wikipedia:Arm]
comment: TODO -- resolve ambiguity -- In anatomy, an arm is one of the upper limbs of an animal. The term arm can also be used for analogous structures, such as one of the paired upper limbs of a four-legged animal, or the arms of cephalopods. In the lexicon of human anatomy, the term arm refers specifically to the segment between the shoulder and the elbow. The segment between the elbow and wrist is the forearm. However, in colloquial speech the term arm often refers to the entire upper limb from shoulder to wrist.
subset: uberon_slim
synonym: "Arm" EXACT []
synonym: "Brachial region" EXACT []
synonym: "brachial region" EXACT []
synonym: "Proximal segment of free upper limb" EXACT []
synonym: "proximal segment of free upper limb" EXACT []
xref: BTO:0001435
xref: EFO:0001410
xref: EHDAA:4164
xref: EHDAA:6210
xref: EHDAA:8275
xref: FMA:24890
xref: GAID:52
xref: galen:Arm
xref: HOG:0000339
xref: MA:0000033
xref: ncithesaurus:Arm
xref: OpenCyc:Mx4rvVjp5ZwpEbGdrcN5Y29ycA
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0001461
name: elbow
alt_id: UBERON:FMA_24901-MA_0000036
def: "." [Wikipedia:Elbow]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cubital region" EXACT []
synonym: "cubital region" EXACT []
synonym: "Elbow" EXACT []
xref: EHDAA:4166
xref: EHDAA:6212
xref: FMA:24901
xref: GAID:54
xref: galen:Elbow
xref: HOG:0000340
xref: MA:0000036
xref: OpenCyc:Mx4rvVjjNZwpEbGdrcN5Y29ycA
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0001462
name: wrist
alt_id: UBERON:FMA_24922-MA_0000039
def: "." [Wikipedia:Wrist]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Carpal region" EXACT []
synonym: "carpal region" EXACT []
synonym: "Wrist" EXACT []
xref: EHDAA:5196
xref: FMA:24922
xref: GAID:59
xref: MA:0000039
xref: OpenCyc:Mx4rvVjncpwpEbGdrcN5Y29ycA
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0001463
name: hand digit 1
alt_id: UBERON:FMA_24938-MA_0000454
def: "lateral-most digit of the hand in mouse and human[Wikipedia]." [Wikipedia:Thumb]
comment: This class represents all instances of the first digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
subset: uberon_slim
synonym: "First digit of hand" EXACT []
synonym: "first digit of hand" EXACT []
synonym: "Pollex; Digitus primus [I]" EXACT []
synonym: "pollex; digitus primus [i]" EXACT []
synonym: "thumb" EXACT []
xref: FMA:24938
xref: GAID:58
xref: MA:0000454
xref: ncithesaurus:Hand_Digit_1
xref: OpenCyc:Mx4rvVjVbpwpEbGdrcN5Y29ycA
is_a: UBERON:0002389 ! finger
[Term]
id: UBERON:0001464
name: hip
alt_id: UBERON:FMA_24964-MA_0000045
def: "." [Wikipedia:Hip]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hip" EXACT []
synonym: "Hip region" EXACT []
synonym: "hip region" EXACT []
synonym: "Regio coxae" EXACT []
synonym: "regio coxae" EXACT []
xref: BTO:0001457
xref: EFO:0001929
xref: EHDAA:5153
xref: EHDAA:6178
xref: FMA:24964
xref: GAID:47
xref: galen:Hip
xref: HOG:0000346
xref: MA:0000045
xref: ncithesaurus:Hip
xref: OpenCyc:Mx4rvVjhy5wpEbGdrcN5Y29ycA
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0001271 ! pelvic girdle
[Term]
id: UBERON:0001465
name: knee
alt_id: UBERON:FMA_24974-MA_0000046
def: "." [Wikipedia:Knee]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Knee" EXACT []
xref: BTO:0003595
xref: EFO:0001957
xref: EHDAA:5159
xref: EHDAA:6184
xref: FMA:24974
xref: GAID:48
xref: galen:Knee
xref: HOG:0000347
xref: MA:0000046
xref: OpenCyc:Mx4rvVjPKZwpEbGdrcN5Y29ycA
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0001466
name: toe
alt_id: UBERON:FMA_25046-MA_0000048
def: "A digit that is part_of a foot[Obol]." [Wikipedia:Toe]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Digit of foot" EXACT []
synonym: "digit of foot" EXACT []
synonym: "Digitus pedis" EXACT []
synonym: "digitus pedis" EXACT []
synonym: "foot digit" EXACT []
synonym: "Toe" EXACT []
xref: BTO:0002348
xref: FMA:25046
xref: GAID:44
xref: MA:0000048
xref: ncithesaurus:Toe
xref: OpenCyc:Mx4rvVjCHZwpEbGdrcN5Y29ycA
is_a: UBERON:0000027 ! hind digit
intersection_of: UBERON:0002544 ! digit
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0001467
name: shoulder
alt_id: UBERON:FMA_25202-MA_0000038
def: "." [Wikipedia:Shoulder]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Shoulder" EXACT []
xref: EHDAA:4180
xref: EHDAA:6228
xref: FMA:25202
xref: GAID:60
xref: HOG:0000342
xref: MA:0000038
xref: ncithesaurus:Shoulder
xref: OpenCyc:Mx4rvViCM5wpEbGdrcN5Y29ycA
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0001421 ! pectoral girdle
[Term]
id: UBERON:0001468
name: intervertebral symphysis
alt_id: UBERON:FMA_25511-MA_0001514
comment: This class was created automatically from a combination of ontologies
synonym: "Intervertebral symphysis" EXACT []
synonym: "Joint of vertebral body" EXACT []
synonym: "joint of vertebral body" EXACT []
xref: FMA:25511
xref: MA:0001514
is_a: UBERON:0002216 ! symphysis
relationship: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0001469
name: sternoclavicular joint
alt_id: UBERON:FMA_25883-MA_0001507
def: "." [Wikipedia:Sternoclavicular_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sternoclavicular joint" EXACT []
xref: FMA:25883
xref: GAID:270
xref: MA:0001507
xref: ncithesaurus:Sternoclavicular_Joint
xref: OpenCyc:Mx4rv_eLJZwpEbGdrcN5Y29ycA
is_a: UBERON:0000982 ! joint
is_a: UBERON:0003657 ! implied link automatically realized ! limb joint
[Term]
id: UBERON:0001470
name: glenohumeral joint
alt_id: UBERON:FMA_25912-MA_0000459
def: "." [Wikipedia:Glenohumeral_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Glenohumeral joint" EXACT []
synonym: "Humeral joint" EXACT []
synonym: "humeral joint" EXACT []
synonym: "Shoulder joint" EXACT []
synonym: "shoulder joint" EXACT []
xref: FMA:25912
xref: GAID:269
xref: HOG:0001002
xref: MA:0000459
xref: ncithesaurus:Shoulder_Joint
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003839 ! implied link automatically realized ! forelimb joint
intersection_of: UBERON:0000982 ! joint
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001471
name: skin of prepuce of penis
alt_id: UBERON:FMA_27648-MA_0001744
comment: This class was created automatically from a combination of ontologies
synonym: "Foreskin of penis" EXACT []
synonym: "foreskin of penis" EXACT []
synonym: "penis foreskin" EXACT []
synonym: "Preputial skin" EXACT []
synonym: "preputial skin" EXACT []
synonym: "Skin of prepuce of penis" EXACT []
xref: FMA:27648
xref: HOG:0001342
xref: MA:0001744
is_a: UBERON:0000014 ! zone of skin
is_a: UBERON:0001331 ! implied link automatically realized ! skin of penis
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001332 ! prepuce of penis
[Term]
id: UBERON:0001472
name: vaginal venous plexus
alt_id: UBERON:FMA_29713-MA_0002257
def: "." [Wikipedia:Vaginal_venous_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Vaginal venous plexus" EXACT []
synonym: "venous vaginal plexus" EXACT []
xref: FMA:29713
xref: MA:0002257
is_a: UBERON:0001593 ! venous plexus
intersection_of: UBERON:0001593 ! venous plexus
intersection_of: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0001473
name: lymphatic vessel
alt_id: UBERON:FMA_30315-FMA_5034-MA_0000138-MA_0000139-MIAA_0000197-XAO_0000375-ZFA_0005105
def: "Segment of lymphatic tree organ, the wall and lumen of which are continuous with those of the veins, directly or indirectly; together with other lymphatic vessels and lymph nodes, it constitutes the lymphatic tree organ. Examples: bronchomediastinal lymph duct, thoracic duct. // A vessel that contains or conveys lymph. // A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [BTO:0000752, Wikipedia:Lymphatic_vessel, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lymph vessel" EXACT []
synonym: "lymph vessel" EXACT []
synonym: "lymphatic system" RELATED []
synonym: "Lymphatic vessel" EXACT []
xref: BTO:0000752
xref: EFO:0000873
xref: EHDAA:8677
xref: FMA:30315
xref: HOG:0001249
xref: MA:0000138
xref: MAT:0000197
xref: MAT:0000443
xref: ncithesaurus:Lymphatic_Vessel
xref: TAO:0005105
xref: XAO:0000375
xref: ZFA:0005105
is_a: UBERON:0000055 ! vessel
disjoint_from: UBERON:0001981 ! blood vessel
relationship: has_part UBERON:0002391 ! lymph
relationship: part_of UBERON:0002049 ! vasculature
relationship: part_of UBERON:0002465 ! lymphoid system
[Term]
id: UBERON:0001474
name: bone
alt_id: UBERON:FMA_30317-MA_0001459-MIAA_0000299-XAO_0000169-ZFA_0001514
def: "The hard form of connective tissue that constitutes the majority of the skeleton. // Portion of tissue which is calcified connective tissue making up the structural elements of the skeletal system. Organ with cavitated organ parts, which primarily consists of compact (cortical) and cancellous bone, which surround bone marrow cavities; together with other bones, cartilages and joints, it constitutes the skeletal system. Examples: femur, sternum, maxilla, vertebra, talus[FMA]" [BTO:0000140, FMA:5018, Wikipedia:Bone, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "bone organ" EXACT []
xref: AAO:0000047
xref: BTO:0000140
xref: EFO:0000298
xref: ENVO:00002039
xref: FMA:5018
xref: GAID:92
xref: galen:Bone
xref: HOG:0001190
xref: MA:0001459
xref: MAT:0000299
xref: MIAA:0000299
xref: ncithesaurus:Bone
xref: OpenCyc:Mx4rvViDlpwpEbGdrcN5Y29ycA
xref: OpenCyc:Mx4rvVkCG5wpEbGdrcN5Y29ycA
xref: TAO:0001514
xref: XAO:0000169
xref: ZFA:0001514
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0001434 ! skeleton
[Term]
id: UBERON:0001475
name: ligament
alt_id: UBERON:FMA_30319-FMA_76821-MA_0000113-MIAA_0000113
comment: made obsolete as it incorrectly grouped classes
is_obsolete: true
consider: UBERON:0000211
consider: UBERON:0002360
[Term]
id: UBERON:0001476
name: deltoid
alt_id: UBERON:FMA_32521-MA_0002286
def: "Intrinsic muscle of shoulder which attaches to the spine of scapula, clavicle and humerus." [Wikipedia:Deltoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Deltoid" EXACT []
xref: EFO:0001412
xref: FMA:32521
xref: HOG:0000846
xref: MA:0002286
xref: ncithesaurus:Deltoid
xref: OpenCyc:Mx4rvVjdc5wpEbGdrcN5Y29ycA
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0001477
name: infraspinatus muscle
alt_id: UBERON:FMA_32546-MA_0002323
def: "." [Wikipedia:Infraspinatus_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Infraspinatus" EXACT []
synonym: "infraspinatus" EXACT []
synonym: "Infraspinatus muscle" EXACT []
xref: EHDAA:8305
xref: FMA:32546
xref: HOG:0000921
xref: MA:0002323
xref: ncithesaurus:Infraspinatus
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0001478
name: teres major
alt_id: UBERON:FMA_32549-MA_0002392
def: "." [Wikipedia:Teres_major]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Teres major" EXACT []
synonym: "Teres major muscle" EXACT []
synonym: "teres major muscle" EXACT []
xref: EHDAA:8321
xref: FMA:32549
xref: HOG:0000750
xref: MA:0002392
xref: ncithesaurus:Teres_Major_Muscle
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0001479
name: sesamoid bone
alt_id: UBERON:FMA_32672-MA_0001375
def: "." [Wikipedia:Sesamoid_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sesamoid bone" EXACT []
xref: FMA:32672
xref: GAID:210
xref: MA:0001375
xref: ncithesaurus:Sesamoid_Bone
is_a: UBERON:0002428 ! limb bone
[Term]
id: UBERON:0001480
name: proximal carpal bone
alt_id: UBERON:FMA_33302-MA_0002557
comment: This class was created automatically from a combination of ontologies
synonym: "Proximal carpal bone" EXACT []
xref: FMA:33302
xref: MA:0002557
is_a: UBERON:0001435 ! carpal bone
[Term]
id: UBERON:0001481
name: distal carpal bone
alt_id: UBERON:FMA_33303-MA_0002558
comment: This class was created automatically from a combination of ontologies
synonym: "Distal carpal bone" EXACT []
xref: FMA:33303
xref: MA:0002558
is_a: UBERON:0001435 ! carpal bone
[Term]
id: UBERON:0001482
name: muscle of shoulder
alt_id: UBERON:FMA_33531-MA_0000633
comment: This class was created automatically from a combination of ontologies
synonym: "Muscle of shoulder" EXACT []
synonym: "Shoulder muscle" EXACT []
synonym: "shoulder muscle" EXACT []
xref: FMA:33531
xref: MA:0000633
is_a: UBERON:0002426 ! implied link automatically realized ! chest muscle
is_a: UBERON:0003662 ! implied link automatically realized ! forelimb muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001483
name: skin of shoulder
alt_id: UBERON:FMA_34830-MA_0000635
comment: This class was created automatically from a combination of ontologies
synonym: "Shoulder skin" EXACT []
synonym: "shoulder skin" EXACT []
synonym: "Skin of shoulder" EXACT []
xref: FMA:34830
xref: MA:0000635
is_a: UBERON:0001419 ! skin of limb
is_a: UBERON:0001868 ! implied link automatically realized ! skin of chest
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001419 ! skin of limb
relationship: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0001484
name: articular capsule
alt_id: UBERON:FMA_34836-MA_0001519
def: "." [Wikipedia:Articular_capsule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Articular capsule" EXACT []
synonym: "Fibrous capsule of joint" EXACT []
synonym: "fibrous capsule of joint" EXACT []
synonym: "Joint capsule" EXACT []
synonym: "joint capsule" EXACT []
synonym: "joint fibrous capsule" EXACT []
xref: FMA:34836
xref: GAID:263
xref: galen:JointCapsule
xref: MA:0001519
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0002217 ! synovial joint
[Term]
id: UBERON:0001485
name: knee joint
alt_id: UBERON:FMA_35175-MA_0000471
def: "." [Wikipedia:Knee_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Knee joint" EXACT []
xref: EFO:0001957
xref: FMA:35175
xref: GAID:114
xref: galen:KneeJoint
xref: HOG:0001003
xref: MA:0000471
xref: ncithesaurus:Knee_Joint
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003840 ! implied link automatically realized ! hindlimb joint
intersection_of: UBERON:0000982 ! joint
intersection_of: part_of UBERON:0001465 ! knee
relationship: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0001486
name: hip joint
alt_id: UBERON:FMA_35178-MA_0000470
def: "." [Wikipedia:Hip_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Articulatio coxofemoralis" EXACT []
synonym: "articulatio coxofemoralis" EXACT []
synonym: "Hip joint" EXACT []
xref: BTO:0001502
xref: FMA:35178
xref: GAID:262
xref: galen:HipJoint
xref: HOG:0001001
xref: MA:0000470
xref: ncithesaurus:Hip_Joint
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003840 ! implied link automatically realized ! hindlimb joint
intersection_of: UBERON:0000982 ! joint
intersection_of: part_of UBERON:0001464 ! hip
relationship: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0001487
name: joint of foot
alt_id: UBERON:FMA_35194-MA_0000464
comment: This class was created automatically from a combination of ontologies
synonym: "Foot joint" EXACT []
synonym: "foot joint" EXACT []
synonym: "Joint of foot" EXACT []
xref: FMA:35194
xref: FMA:71349
xref: GAID:256
xref: MA:0000464
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003840 ! implied link automatically realized ! hindlimb joint
is_a: UBERON:0003841 ! implied link automatically realized ! autopod joint
intersection_of: UBERON:0000982 ! joint
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0001488
name: ankle joint
alt_id: UBERON:FMA_35195-MA_0000463
def: "." [Wikipedia:Ankle_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ankle joint" EXACT []
synonym: "Talocrural joint" EXACT []
synonym: "talocrural joint" EXACT []
xref: EFO:0001409
xref: FMA:35195
xref: GAID:257
xref: galen:AnkleJoint
xref: MA:0000463
xref: ncithesaurus:Ankle_Joint
is_a: UBERON:0001487 ! joint of foot
intersection_of: UBERON:0000982 ! joint
intersection_of: part_of UBERON:0002388 ! ankle
relationship: part_of UBERON:0002388 ! ankle
[Term]
id: UBERON:0001489
name: joint of hand
alt_id: UBERON:FMA_35245-MA_0000452
comment: This class was created automatically from a combination of ontologies
synonym: "Hand joint" EXACT []
synonym: "hand joint" EXACT []
synonym: "Joint of hand" EXACT []
xref: FMA:35245
xref: FMA:71345
xref: MA:0000452
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003839 ! implied link automatically realized ! forelimb joint
is_a: UBERON:0003841 ! implied link automatically realized ! autopod joint
intersection_of: UBERON:0000982 ! joint
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0001490
name: elbow joint
alt_id: UBERON:FMA_35289-MA_0000451
def: "." [Wikipedia:Elbow_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Elbow joint" EXACT []
xref: FMA:35289
xref: GAID:253
xref: galen:ElbowJoint
xref: HOG:0000997
xref: MA:0000451
xref: ncithesaurus:Elbow_Joint
is_a: UBERON:0002217 ! synovial joint
is_a: UBERON:0003839 ! implied link automatically realized ! forelimb joint
intersection_of: UBERON:0000982 ! joint
intersection_of: part_of UBERON:0001461 ! elbow
relationship: part_of UBERON:0001461 ! elbow
[Term]
id: UBERON:0001491
name: wrist joint
alt_id: UBERON:FMA_35291-MA_0000460
def: "." [Wikipedia:Wrist_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Joint of wrist" EXACT []
synonym: "joint of wrist" EXACT []
synonym: "Radiocarpal joint" EXACT []
synonym: "radiocarpal joint" EXACT []
synonym: "Wrist joint" EXACT []
xref: FMA:35291
xref: GAID:274
xref: MA:0000460
xref: ncithesaurus:Wrist_Joint
xref: OpenCyc:Mx4rvZD2PJwpEbGdrcN5Y29ycA
is_a: UBERON:0001489 ! joint of hand
intersection_of: UBERON:0000982 ! joint
intersection_of: part_of UBERON:0001462 ! wrist
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001492
name: radial nerve
alt_id: UBERON:FMA_37069-MA_0001171
def: "." [Wikipedia:Radial_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Radial nerve" EXACT []
xref: EHDAA:5650
xref: FMA:37069
xref: GAID:845
xref: HOG:0000896
xref: MA:0001171
xref: ncithesaurus:Radial_Nerve
xref: OpenCyc:Mx4rvfk7E5wpEbGdrcN5Y29ycA
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve
relationship: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001814 ! brachial nerve plexus
[Term]
id: UBERON:0001493
name: axillary nerve
alt_id: UBERON:FMA_37072-MA_0001166
def: "." [Wikipedia:Axillary_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Axillary nerve" EXACT []
synonym: "Circumflex humeral nerve" EXACT []
synonym: "circumflex humeral nerve" EXACT []
xref: FMA:37072
xref: MA:0001166
xref: ncithesaurus:Axillary_Nerve
xref: OpenCyc:Mx4rvgwMfpwpEbGdrcN5Y29ycA
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve
is_a: UBERON:0003436 ! implied link automatically realized ! shoulder nerve
relationship: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001467 ! shoulder
relationship: part_of UBERON:0001814 ! brachial nerve plexus
[Term]
id: UBERON:0001494
name: ulnar nerve
alt_id: UBERON:FMA_37319-MA_0001174
def: "." [Wikipedia:Ulnar_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ulnar nerve" EXACT []
xref: FMA:37319
xref: GAID:846
xref: HOG:0000922
xref: MA:0001174
xref: ncithesaurus:Ulnar_Nerve
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve
relationship: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001814 ! brachial nerve plexus
[Term]
id: UBERON:0001495
name: pectoral muscle
alt_id: UBERON:FMA_37349-MA_0002423
def: "." [Wikipedia:Pectoral_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Muscle of pectoral part of chest" EXACT []
synonym: "muscle of pectoral part of chest" EXACT []
synonym: "Muscle of pectoral region" EXACT []
synonym: "muscle of pectoral region" EXACT []
synonym: "Pectoral muscle" EXACT []
synonym: "pectoralis muscle" EXACT []
xref: BTO:0000023
xref: FMA:37349
xref: GAID:153
xref: MA:0002423
xref: ncithesaurus:Pectoralis_Muscle
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001496
name: ascending aorta
alt_id: UBERON:FMA_3736-MA_0002570
def: "a portion of the aorta commencing at the upper part of the base of the left ventricle, on a level with the lower border of the third costal cartilage behind the left half of the sternum; it passes obliquely upward, forward, and to the right, in the direction of the heart’s axis, as high as the upper border of the second right costal cartilage, describing a slight curve in its course, and being situated, about 6 cm behind the posterior surface of the sternum. The total length is about 5 cm in length [Wikipedia]" [Wikipedia:Ascending_aorta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ascending aorta" EXACT []
synonym: "Pars ascendens aortae" EXACT []
synonym: "pars ascendens aortae" EXACT []
xref: FMA:3736
xref: MA:0002570
xref: ncithesaurus:Ascending_Aorta
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001515 ! thoracic aorta
[Term]
id: UBERON:0001497
name: muscle of pelvic girdle
alt_id: UBERON:FMA_37367-MA_0000537
comment: This class was created automatically from a combination of ontologies
synonym: "Muscle of pelvic girdle" EXACT []
synonym: "Pelvic girdle muscle" EXACT []
synonym: "pelvic girdle muscle" EXACT []
xref: AAO:0000427
xref: FMA:37367
xref: MA:0000537
is_a: UBERON:0001325 ! muscle of pelvis
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001271 ! pelvic girdle
[Term]
id: UBERON:0001498
name: muscle of foot
alt_id: UBERON:FMA_37369-MA_0000652
comment: This class was created automatically from a combination of ontologies
synonym: "Foot muscle" EXACT []
synonym: "foot muscle" EXACT []
synonym: "Muscle of foot" EXACT []
xref: BTO:0000477
xref: FMA:37369
xref: MA:0000652
is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0001499
name: muscle of arm
alt_id: UBERON:FMA_37370-MA_0000594
comment: This class was created automatically from a combination of ontologies
synonym: "Arm muscle" EXACT []
synonym: "arm muscle" EXACT []
synonym: "Muscle of arm" EXACT []
xref: FMA:37370
xref: MA:0000594
is_a: UBERON:0003662 ! implied link automatically realized ! forelimb muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0001500
name: muscle of hand
alt_id: UBERON:FMA_37372-MA_0000628
comment: This class was created automatically from a combination of ontologies
synonym: "Hand muscle" EXACT []
synonym: "hand muscle" EXACT []
synonym: "Muscle of hand" EXACT []
xref: FMA:37372
xref: MA:0000628
is_a: UBERON:0001499 ! implied link automatically realized ! muscle of arm
is_a: UBERON:0001630 ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0001501
name: lumbrical of hand
alt_id: UBERON:FMA_37385-MA_0002316
comment: This class was created automatically from a combination of ontologies
synonym: "Hand lumbrical" EXACT []
synonym: "hand lumbrical" EXACT []
synonym: "hand lumbrical muscle" EXACT []
synonym: "Lumbrical of hand" EXACT []
xref: FMA:37385
xref: MA:0002316
is_a: UBERON:0001500 ! muscle of hand
[Term]
id: UBERON:0001502
name: interosseous muscle of hand
alt_id: UBERON:FMA_37417-MA_0002313
comment: This class was created automatically from a combination of ontologies
synonym: "hand interosseous muscle" EXACT []
synonym: "Interosseous muscle of hand" EXACT []
xref: FMA:37417
xref: MA:0002313
xref: ncithesaurus:Hand_Interosseous_Muscle
is_a: UBERON:0001500 ! muscle of hand
[Term]
id: UBERON:0001503
name: dorsal interosseous of hand
alt_id: UBERON:FMA_37418-MA_0002314
comment: This class was created automatically from a combination of ontologies
synonym: "dorsal hand interosseus muscle" EXACT []
synonym: "Dorsal interosseous of hand" EXACT []
xref: FMA:37418
xref: MA:0002314
is_a: UBERON:0001502 ! interosseous muscle of hand
[Term]
id: UBERON:0001504
name: lumbrical of foot
alt_id: UBERON:FMA_37453-MA_0002305
comment: This class was created automatically from a combination of ontologies
synonym: "Foot lumbrical" EXACT []
synonym: "foot lumbrical" EXACT []
synonym: "foot lumbrical muscle" EXACT []
synonym: "Lumbrical of foot" EXACT []
xref: FMA:37453
xref: MA:0002305
is_a: UBERON:0001498 ! muscle of foot
[Term]
id: UBERON:0001505
name: coracobrachialis
alt_id: UBERON:FMA_37664-MA_0002282
def: "." [Wikipedia:Coracobrachialis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "coracobrachial" EXACT []
synonym: "Coracobrachialis" EXACT []
synonym: "Pirogoff's aponeurosis" EXACT []
synonym: "pirogoff's aponeurosis" EXACT []
xref: FMA:37664
xref: MA:0002282
xref: ncithesaurus:Coracobrachialis
is_a: UBERON:0001499 ! muscle of arm
relationship: part_of UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0001506
name: brachialis
alt_id: UBERON:FMA_37667-MA_0002271
def: "." [Wikipedia:Brachialis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Brachialis" EXACT []
synonym: "Casserio's muscle" EXACT []
synonym: "casserio's muscle" EXACT []
xref: EHDAA:8281
xref: FMA:37667
xref: HOG:0001026
xref: MA:0002271
xref: ncithesaurus:Brachialis
is_a: UBERON:0001499 ! muscle of arm
[Term]
id: UBERON:0001507
name: biceps brachii
alt_id: UBERON:FMA_37670-MA_0002269
def: "." [Wikipedia:Biceps_brachii]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Biceps brachii" EXACT []
xref: BTO:0003419
xref: FMA:37670
xref: MA:0002269
is_a: UBERON:0001499 ! muscle of arm
relationship: part_of UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0001508
name: arch of aorta
alt_id: UBERON:FMA_3768-MA_0000475-MIAA_0000059
def: "." [Wikipedia:Arch_of_aorta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Aortic arch" EXACT []
synonym: "aortic arch" RELATED []
synonym: "Arch of aorta" EXACT []
xref: EFO:0002526
xref: EHDAA:571
xref: EHDAA:7327
xref: FMA:3768
xref: HOG:0000122
xref: MA:0000475
xref: MAT:0000059
xref: MIAA:0000059
xref: ncithesaurus:Aortic_Arch
xref: ZFA:0005004
is_a: UBERON:0000481 ! multi-tissue structure
relationship: part_of UBERON:0001515 ! thoracic aorta
[Term]
id: UBERON:0001509
name: triceps brachii
alt_id: UBERON:FMA_37688-MA_0002399
def: "." [Wikipedia:Triceps_brachii]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Triceps brachii" EXACT []
xref: FMA:37688
xref: MA:0002399
is_a: UBERON:0001499 ! muscle of arm
[Term]
id: UBERON:0001510
name: skin of knee
alt_id: UBERON:FMA_37800-MA_0000668
comment: This class was created automatically from a combination of ontologies
synonym: "Knee skin" EXACT []
synonym: "knee skin" EXACT []
synonym: "Skin of knee" EXACT []
xref: FMA:37800
xref: MA:0000668
xref: ncithesaurus:Knee_Skin
is_a: UBERON:0001419 ! skin of limb
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001465 ! knee
relationship: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0001511
name: skin of leg
alt_id: UBERON:FMA_37828-MA_0000674
comment: This class was created automatically from a combination of ontologies
synonym: "Leg skin" EXACT []
synonym: "leg skin" EXACT []
synonym: "Skin of leg" EXACT []
xref: FMA:37828
xref: MA:0000674
xref: ncithesaurus:Leg_Skin
is_a: UBERON:0001419 ! skin of limb
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0000978 ! leg
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001512
name: skin of ankle
alt_id: UBERON:FMA_37831-MA_0000641
comment: This class was created automatically from a combination of ontologies
synonym: "Ankle skin" EXACT []
synonym: "ankle skin" EXACT []
synonym: "Skin of ankle" EXACT []
xref: FMA:37831
xref: MA:0000641
xref: ncithesaurus:Ankle_Skin
is_a: UBERON:0001419 ! skin of limb
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002388 ! ankle
relationship: part_of UBERON:0002388 ! ankle
[Term]
id: UBERON:0001513
name: skin of foot
alt_id: UBERON:FMA_37834-MA_0000654
comment: This class was created automatically from a combination of ontologies
synonym: "Foot skin" EXACT []
synonym: "foot skin" EXACT []
synonym: "Skin of foot" EXACT []
xref: FMA:37834
xref: MA:0000654
xref: ncithesaurus:Foot_Skin
is_a: UBERON:0001419 ! skin of limb
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002387 ! foot
relationship: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0001514
name: descending aorta
alt_id: UBERON:FMA_3784-MA_0002571
def: "." [Wikipedia:Descending_aorta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Descending aorta" EXACT []
synonym: "Pars descendens aortae" EXACT []
synonym: "pars descendens aortae" EXACT []
xref: FMA:3784
xref: MA:0002571
xref: ncithesaurus:Descending_Aorta
xref: OpenCyc:Mx4rv4EE35wpEbGdrcN5Y29ycA
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0001515
name: thoracic aorta
alt_id: UBERON:FMA_3786-MA_0002569
def: "." [Wikipedia:Thoracic_aorta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Thoracic aorta" EXACT []
synonym: "Thoracic part of aorta" EXACT []
synonym: "thoracic part of aorta" EXACT []
xref: EFO:0002525
xref: FMA:3786
xref: GAID:471
xref: MA:0002569
xref: ncithesaurus:Thoracic_Aorta
xref: OpenCyc:Mx4rveb9TpwpEbGdrcN5Y29ycA
is_a: UBERON:0000947 ! aorta
is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel
intersection_of: UBERON:0000947 ! aorta
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0001516
name: abdominal aorta
alt_id: UBERON:FMA_3789-MA_0000474
def: "." [Wikipedia:Abdominal_aorta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Abdominal aorta" EXACT []
synonym: "Abdominal part of aorta" EXACT []
synonym: "abdominal part of aorta" EXACT []
synonym: "Descending abdominal aorta" EXACT []
synonym: "descending abdominal aorta" EXACT []
synonym: "Pars abdominalis aortae" EXACT []
synonym: "pars abdominalis aortae" EXACT []
xref: BTO:0002976
xref: EFO:0002524
xref: FMA:3789
xref: GAID:470
xref: galen:AbdominalAorta
xref: MA:0000474
xref: ncithesaurus:Abdominal_Aorta
xref: OpenCyc:Mx4rvYhWCZwpEbGdrcN5Y29ycA
is_a: UBERON:0000947 ! aorta
is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel
intersection_of: UBERON:0000947 ! aorta
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0001514 ! descending aorta
[Term]
id: UBERON:0001517
name: skin of elbow
alt_id: UBERON:0003399
alt_id: UBERON:FMA_38250-MA_0000610
comment: This class was created automatically from a combination of ontologies
synonym: "elbow skin" EXACT []
xref: EMAPA:18051
xref: FMA:38250
xref: MA:0000610
xref: ncithesaurus:Elbow_Skin
is_a: UBERON:0002427 ! arm skin
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001461 ! elbow
relationship: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001461 ! elbow
[Term]
id: UBERON:0001518
name: skin of wrist
alt_id: UBERON:FMA_38280-MA_0000638
comment: This class was created automatically from a combination of ontologies
synonym: "Skin of wrist" EXACT []
synonym: "Wrist skin" EXACT []
synonym: "wrist skin" EXACT []
xref: FMA:38280
xref: MA:0000638
xref: ncithesaurus:Wrist_Skin
is_a: UBERON:0001419 ! skin of limb
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001462 ! wrist
relationship: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0001519
name: skin of hand
alt_id: UBERON:FMA_38295-MA_0000630
comment: This class was created automatically from a combination of ontologies
synonym: "Hand skin" EXACT []
synonym: "hand skin" EXACT []
synonym: "Skin of hand" EXACT []
xref: FMA:38295
xref: MA:0000630
xref: ncithesaurus:Hand_Skin
is_a: UBERON:0001419 ! skin of limb
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0001520
name: pronator teres
alt_id: UBERON:FMA_38450-MA_0002357
def: "." [Wikipedia:Pronator_teres]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pronator teres" EXACT []
xref: FMA:38450
xref: MA:0002357
xref: ncithesaurus:Pronator_Teres
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001521
name: flexor carpi radialis
alt_id: UBERON:FMA_38459-MA_0002297
def: "." [Wikipedia:Flexor_carpi_radialis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Flexor carpi radialis" EXACT []
xref: FMA:38459
xref: MA:0002297
xref: ncithesaurus:Flexor_Carpi_Radialis
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001522
name: flexor carpi ulnaris
alt_id: UBERON:FMA_38465-MA_0002298
def: "." [Wikipedia:Flexor_carpi_ulnaris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Flexor carpi ulnaris" EXACT []
xref: FMA:38465
xref: MA:0002298
xref: ncithesaurus:Flexor_Carpi_Ulnaris
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001523
name: flexor digitorum profundus
alt_id: UBERON:FMA_38478-MA_0002300
def: "." [Wikipedia:Flexor_digitorum_profundus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Flexor digitorum profundus" EXACT []
xref: BTO:0001246
xref: FMA:38478
xref: MA:0002300
xref: ncithesaurus:Flexor_Digitorum_Profundus
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001524
name: extensor carpi radialis longus
alt_id: UBERON:FMA_38494-MA_0002291
def: "." [Wikipedia:Extensor_carpi_radialis_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Extensor carpi radialis longus" EXACT []
xref: FMA:38494
xref: MA:0002291
xref: ncithesaurus:Extensor_Carpi_Radialis_Longus
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001525
name: extensor carpi radialis brevis
alt_id: UBERON:FMA_38497-MA_0002290
def: "." [Wikipedia:Extensor_carpi_radialis_brevis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Extensor carpi radialis brevis" EXACT []
xref: FMA:38497
xref: MA:0002290
xref: ncithesaurus:Extensor_Carpi_Radialis_Brevis
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001526
name: extensor carpi ulnaris
alt_id: UBERON:FMA_38506-MA_0002292
def: "." [Wikipedia:Extensor_carpi_ulnaris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Extensor carpi ulnaris" EXACT []
xref: FMA:38506
xref: MA:0002292
xref: ncithesaurus:Extensor_Carpi_Ulnaris
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0001527
name: abductor pollicis longus
alt_id: UBERON:FMA_38515-MA_0002266
def: "." [Wikipedia:Abductor_pollicis_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Abductor pollicis longus" EXACT []
xref: FMA:38515
xref: MA:0002266
xref: ncithesaurus:Abductor_Pollicis_Longus
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001528
name: radio-ulnar joint
alt_id: UBERON:FMA_38863-MA_0000462
def: "." [Wikipedia:Radio-ulnar_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Radio-ulnar joint" EXACT []
synonym: "Radioulnar joint" EXACT []
synonym: "radioulnar joint" EXACT []
xref: FMA:38863
xref: MA:0000462
is_a: UBERON:0001491 ! wrist joint
[Term]
id: UBERON:0001529
name: brachiocephalic artery
alt_id: UBERON:FMA_3932-MA_0001922
def: "." [Wikipedia:Brachiocephalic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Brachiocephalic artery" EXACT []
synonym: "Brachiocephalic trunk" EXACT []
synonym: "brachiocephalic trunk" EXACT []
synonym: "Innominate artery" EXACT []
synonym: "innominate artery" RELATED []
xref: EFO:0002550
xref: FMA:3932
xref: GAID:476
xref: MA:0001922
xref: ncithesaurus:Innominate_Artery
xref: OpenCyc:Mx4rv9mMTpwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001530
name: common carotid artery
alt_id: UBERON:FMA_3939-ZFA_0000097
def: "Artery originating at the junction of the first two aortic arches and supplying the anterior brain. Kimmel et al, 1995." [Wikipedia:Common_carotid_artery, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Carotid artery" EXACT []
synonym: "carotid artery" EXACT []
synonym: "Common carotid artery" EXACT []
synonym: "Trunk of common carotid tree" EXACT []
synonym: "trunk of common carotid tree" EXACT []
xref: BTO:0000168
xref: EFO:0000818
xref: EHDAA:6385
xref: EHDAA:7331
xref: FMA:3939
xref: GAID:478
xref: GAID:479
xref: galen:CarotidArtery
xref: HOG:0000266
xref: HOG:0000272
xref: MA:0001926
xref: MAT:0000501
xref: ncithesaurus:Carotid_Artery
xref: OpenCyc:Mx4rvg7rcJwpEbGdrcN5Y29ycA
xref: TAO:0000097
xref: ZFA:0000097
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001531
name: right common carotid artery
alt_id: UBERON:FMA_3941-MA_0001928
def: "." [Wikipedia:Right_common_carotid_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Right common carotid artery" EXACT []
synonym: "Trunk of right common carotid tree" EXACT []
synonym: "trunk of right common carotid tree" EXACT []
xref: FMA:3941
xref: MA:0001928
xref: ncithesaurus:Right_Common_Carotid_Artery
xref: OpenCyc:Mx4rtW9-AqgEEdudWQACs5b6Bw
is_a: UBERON:0001530 ! common carotid artery
[Term]
id: UBERON:0001532
name: internal carotid artery
alt_id: UBERON:FMA_3947-MA_0001930-XAO_0000366-ZFA_0005081
def: "." [Wikipedia:Internal_carotid_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ICA" RELATED []
synonym: "Internal carotid artery" EXACT []
xref: EFO:0001952
xref: EHDAA:408
xref: EHDAA:6389
xref: FMA:3947
xref: GAID:481
xref: HOG:0000267
xref: MA:0001930
xref: ncithesaurus:Internal_Carotid_Artery
xref: OpenCyc:Mx4rvYx8KZwpEbGdrcN5Y29ycA
xref: TAO:0005081
xref: XAO:0000366
xref: ZFA:0005081
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel
relationship: part_of UBERON:0001530 ! common carotid artery
[Term]
id: UBERON:0001533
name: subclavian artery
alt_id: UBERON:FMA_3951-MA_0002045-ZFA_0005086
def: "The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch. Kimmel et al. 1993" [Wikipedia:Subclavian_artery, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Arterial tree of upper limb" EXACT []
synonym: "arterial tree of upper limb" EXACT []
synonym: "PA" RELATED []
synonym: "pectoral artery" EXACT []
synonym: "Subclavian arterial tree" EXACT []
synonym: "subclavian arterial tree" EXACT []
synonym: "Subclavian artery" EXACT []
xref: EHDAA:4357
xref: FMA:3951
xref: GAID:511
xref: MA:0002045
xref: ncithesaurus:Subclavian_Artery
xref: TAO:0005086
xref: ZFA:0005086
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001534
name: right subclavian artery
alt_id: UBERON:FMA_3953-MA_0002047
def: "." [Wikipedia:Right_subclavian_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Right subclavian artery" EXACT []
xref: FMA:3953
xref: MA:0002047
xref: ncithesaurus:Right_Subclavian_Artery
xref: OpenCyc:Mx4rtW7hwqgEEdudWQACs5b6Bw
is_a: UBERON:0001533 ! subclavian artery
[Term]
id: UBERON:0001535
name: vertebral artery
alt_id: UBERON:FMA_3956-MA_0002077-ZFA_0005033
def: "." [Wikipedia:Vertebral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Vertebral artery" EXACT []
xref: EHDAA:5328
xref: FMA:3956
xref: GAID:518
xref: HOG:0000263
xref: MA:0002077
xref: ncithesaurus:Vertebral_Artery
xref: OpenCyc:Mx4rvg_ir5wpEbGdrcN5Y29ycA
xref: TAO:0005033
xref: ZFA:0005033
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel
relationship: part_of UBERON:0001533 ! subclavian artery
[Term]
id: UBERON:0001536
name: left common carotid artery
alt_id: UBERON:FMA_4058-MA_0001927
def: "." [Wikipedia:Left_common_carotid_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Left common carotid artery" EXACT []
synonym: "Trunk of left common carotid tree" EXACT []
synonym: "trunk of left common carotid tree" EXACT []
xref: FMA:4058
xref: MA:0001927
xref: ncithesaurus:Left_Common_Carotid_Artery
xref: OpenCyc:Mx4rdz4xcLVIEduAAAAOpmP6tw
is_a: UBERON:0001530 ! common carotid artery
[Term]
id: UBERON:0001537
name: anterior tibial artery
alt_id: UBERON:FMA_43894-MA_0002574
def: "." [Wikipedia:Anterior_tibial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anterior tibial artery" EXACT []
xref: FMA:43894
xref: MA:0002574
xref: ncithesaurus:Anterior_Tibial_Artery
xref: OpenCyc:Mx4rvaHcEZwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001538
name: posterior tibial artery
alt_id: UBERON:FMA_43895-MA_0002575
def: "." [Wikipedia:Posterior_tibial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Posterior tibial artery" EXACT []
xref: FMA:43895
xref: MA:0002575
xref: ncithesaurus:Posterior_Tibial_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001539
name: dorsalis pedis artery
alt_id: UBERON:FMA_43915-MA_0001942
def: "." [Wikipedia:Dorsalis_pedis_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Dorsal artery of foot" EXACT []
synonym: "dorsal artery of foot" EXACT []
synonym: "Dorsalis pedis artery" EXACT []
xref: FMA:43915
xref: galen:DorsalisPedisArtery
xref: MA:0001942
xref: ncithesaurus:Dorsalis_Pedis_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001540
name: peroneal artery
alt_id: UBERON:FMA_43921-MA_0002018
def: "." [Wikipedia:Peroneal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Fibular artery" EXACT []
synonym: "fibular artery" EXACT []
synonym: "Peroneal artery" EXACT []
xref: FMA:43921
xref: MA:0002018
xref: ncithesaurus:Peroneal_Artery
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel
relationship: part_of UBERON:0001538 ! posterior tibial artery
[Term]
id: UBERON:0001541
name: medial plantar artery
alt_id: UBERON:FMA_43925-MA_0001997
def: "." [Wikipedia:Medial_plantar_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Medial plantar artery" EXACT []
xref: FMA:43925
xref: MA:0001997
xref: ncithesaurus:Medial_Plantar_Artery
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel
relationship: part_of UBERON:0001538 ! posterior tibial artery
[Term]
id: UBERON:0001542
name: inguinal lymph node
alt_id: UBERON:FMA_44226-MA_0000737
def: "." [Wikipedia:Inguinal_lymph_node]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Inguinal lymph node" EXACT []
xref: FMA:44226
xref: MA:0000737
xref: ncithesaurus:Inguinal_Lymph_Node
is_a: UBERON:0000029 ! lymph node
[Term]
id: UBERON:0001543
name: popliteal lymph node
alt_id: UBERON:FMA_44227-MA_0000738
def: "." [Wikipedia:Popliteal_lymph_node]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Popliteal lymph node" EXACT []
xref: FMA:44227
xref: MA:0000738
xref: ncithesaurus:Popliteal_Lymph_Node
is_a: UBERON:0000029 ! lymph node
[Term]
id: UBERON:0001544
name: popliteal vein
alt_id: UBERON:FMA_44327-MA_0002197
def: "." [Wikipedia:Popliteal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Popliteal vein" EXACT []
xref: FMA:44327
xref: GAID:537
xref: MA:0002197
xref: ncithesaurus:Popliteal_Vein
xref: OpenCyc:Mx4rv8Ch-JwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel
relationship: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0001545
name: anterior tibial vein
alt_id: UBERON:FMA_44331-MA_0002244
def: "." [Wikipedia:Anterior_tibial_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anterior tibial vein" EXACT []
xref: FMA:44331
xref: galen:AnteriorTibialVein
xref: MA:0002244
xref: ncithesaurus:Anterior_Tibial_Vein
xref: OpenCyc:Mx4rvXYDl5wpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003503 ! implied link automatically realized ! leg blood vessel
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0001546
name: posterior tibial vein
alt_id: UBERON:FMA_44332-MA_0002245
def: "." [Wikipedia:Posterior_tibial_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Posterior tibial vein" EXACT []
xref: FMA:44332
xref: MA:0002245
xref: ncithesaurus:Posterior_Tibial_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001547
name: small saphenous vein
alt_id: UBERON:FMA_44333-MA_0002217
def: "." [Wikipedia:Small_saphenous_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lesser saphenous vein" EXACT []
synonym: "lesser saphenous vein" EXACT []
synonym: "Short saphenous vein" EXACT []
synonym: "short saphenous vein" EXACT []
synonym: "Small saphenous vein" EXACT []
xref: BTO:0003272
xref: FMA:44333
xref: galen:LesserSaphenousVein
xref: MA:0002217
xref: ncithesaurus:Short_Saphenous_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001548
name: lateral marginal vein
alt_id: UBERON:FMA_44359-MA_0002160
comment: This class was created automatically from a combination of ontologies
synonym: "Lateral marginal vein" EXACT []
synonym: "Lateral marginal vein of foot" EXACT []
synonym: "lateral marginal vein of foot" EXACT []
synonym: "Vena marginalis lateralis" EXACT []
synonym: "vena marginalis lateralis" EXACT []
xref: FMA:44359
xref: MA:0002160
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001549
name: dorsal metatarsal vein
alt_id: UBERON:FMA_44377-MA_0002105
comment: This class was created automatically from a combination of ontologies
synonym: "Dorsal metatarsal vein" EXACT []
synonym: "Metatarsal vein" EXACT []
synonym: "metatarsal vein" EXACT []
xref: FMA:44377
xref: MA:0002105
xref: ncithesaurus:Dorsal_Metatarsal_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001550
name: medial marginal vein
alt_id: UBERON:FMA_44420-MA_0002171
comment: This class was created automatically from a combination of ontologies
synonym: "Medial marginal vein" EXACT []
synonym: "Medial marginal vein of foot" EXACT []
synonym: "medial marginal vein of foot" EXACT []
synonym: "Vena marginalis medialis" EXACT []
synonym: "vena marginalis medialis" EXACT []
xref: FMA:44420
xref: MA:0002171
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001551
name: sural vein
alt_id: UBERON:FMA_44561-MA_0002231
comment: This class was created automatically from a combination of ontologies
synonym: "Sural vein" EXACT []
xref: FMA:44561
xref: MA:0002231
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001552
name: arcuate artery
alt_id: UBERON:FMA_44594-MA_0002583
def: "." [Wikipedia:Arcuate_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Arcuate artery" EXACT []
xref: FMA:44594
xref: MA:0002583
relationship: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0001553
name: medial tarsal artery
alt_id: UBERON:FMA_44598-MA_0001998
comment: This class was created automatically from a combination of ontologies
synonym: "Medial tarsal artery" EXACT []
xref: FMA:44598
xref: MA:0001998
xref: ncithesaurus:Medial_Tarsal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001554
name: skin of hip
alt_id: UBERON:FMA_45282-MA_0000658
comment: This class was created automatically from a combination of ontologies
synonym: "Hip skin" EXACT []
synonym: "hip skin" EXACT []
synonym: "Skin of hip" EXACT []
xref: FMA:45282
xref: MA:0000658
is_a: UBERON:0001419 ! skin of limb
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001464 ! hip
relationship: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0001555
name: gut
alt_id: UBERON:FMA_45615-MA_0000917-ZFA_0000112
def: "The alimentary or digestive tract, and associated organs. Extends from the beginning of the intestines to the anus" [Wikipedia:Gastrointestinal_tract, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "alimentary canal" RELATED []
synonym: "digestive tract" EXACT []
synonym: "excretory canal" RELATED []
synonym: "excretory tract " RELATED []
synonym: "Gut" EXACT []
synonym: "gut tube" RELATED []
synonym: "lower gastrointestinal tract" EXACT []
xref: BILA:0000083
xref: BTO:0000545
xref: EHDAA:518
xref: FBbt:00003125
xref: FMA:45615
xref: HOG:0000309
xref: MA:0000917
xref: ncithesaurus:Lower_Gastrointestinal_Tract
xref: OpenCyc:Mx4rvVi0GpwpEbGdrcN5Y29ycA
xref: TAO:0000112
xref: ZFA:0000112
is_a: UBERON:0000481 ! multi-tissue structure
relationship: develops_from UBERON:0000925 ! endoderm
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0001556
name: lower urinary tract
alt_id: UBERON:FMA_45659-MA_0002636
def: "*Subdivision of urinary system which consists of the urinary bladder and the urethra." []
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lower urinary tract" EXACT []
xref: FMA:45659
xref: MA:0002636
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0001557
name: upper respiratory tract
alt_id: UBERON:FMA_45661-MA_0000442
def: "Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx" [Wikipedia:Upper_respiratory_tract]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Upper respiratory tract" EXACT []
xref: FMA:45661
xref: HOG:0000406
xref: MA:0000442
xref: OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ
is_a: UBERON:0000072 ! segment of respiratory tract
[Term]
id: UBERON:0001558
name: lower respiratory tract
alt_id: UBERON:FMA_45662-MA_0000435
def: "Subdivision of respiratory system which consists of the tracheobronchial tree, right lung and left lung." [Wikipedia:Lower_respiratory_tract]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lower respiratory tract" EXACT []
xref: FMA:45662
xref: HOG:0000382
xref: MA:0000435
xref: OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g
is_a: UBERON:0000072 ! segment of respiratory tract
[Term]
id: UBERON:0001559
name: head of organ
alt_id: UBERON:FMA_45729-MA_0000581
comment: This class was created automatically from a combination of ontologies
synonym: "Head of organ" EXACT []
synonym: "Organ head" EXACT []
synonym: "organ head" EXACT []
xref: FMA:45729
is_a: UBERON:0000481 ! multi-tissue structure
[Term]
id: UBERON:0001560
name: neck of organ
alt_id: UBERON:FMA_45733-MA_0000589
comment: This class was created automatically from a combination of ontologies
synonym: "Neck of organ" EXACT []
synonym: "Organ neck" EXACT []
synonym: "organ neck" EXACT []
xref: FMA:45733
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0001561
name: subcostal artery
alt_id: UBERON:FMA_4613-MA_0002048
def: "." [Wikipedia:Subcostal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Subcostal artery" EXACT []
xref: FMA:4613
xref: MA:0002048
xref: ncithesaurus:Subcostal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001562
name: digastric
alt_id: UBERON:FMA_46291-MA_0002288
def: "." [Wikipedia:Digastric]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Digastric" EXACT []
xref: FMA:46291
xref: MA:0002288
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001563
name: longus capitis
alt_id: UBERON:FMA_46308-MA_0002340
def: "." [Wikipedia:Longus_capitis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Longus capitis" EXACT []
xref: FMA:46308
xref: MA:0002340
xref: ncithesaurus:Longus_Capitis
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001564
name: mylohyoid
alt_id: UBERON:FMA_46320-MA_0002344
def: "." [Wikipedia:Mylohyoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Mylohyoid" EXACT []
xref: FMA:46320
xref: MA:0002344
xref: ncithesaurus:Mylohyoid
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001565
name: geniohyoid
alt_id: UBERON:FMA_46325-MA_0002308
def: "." [Wikipedia:Geniohyoid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Geniohyoid" EXACT []
xref: FMA:46325
xref: MA:0002308
xref: ncithesaurus:Geniohyoid
is_a: UBERON:0002377 ! muscle of neck
[Term]
id: UBERON:0001566
name: cricothyroid muscle
alt_id: UBERON:FMA_46417-MA_0002284
def: "." [Wikipedia:Cricothyroid_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cricothyroid" EXACT []
synonym: "cricothyroid" EXACT []
synonym: "Cricothyroid muscle" EXACT []
xref: FMA:46417
xref: MA:0002284
xref: ncithesaurus:Cricothyroid_Muscle
is_a: UBERON:0001568 ! muscle of larynx
[Term]
id: UBERON:0001567
name: cheek
alt_id: UBERON:FMA_46476-MA_0002475
def: "." [Wikipedia:Cheek]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cheek" EXACT []
xref: BTO:0001754
xref: FMA:46476
xref: GAID:65
xref: galen:Cheek
xref: MA:0002475
xref: ncithesaurus:Cheek
xref: OpenCyc:Mx4rvVi5WZwpEbGdrcN5Y29ycA
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0001568
name: muscle of larynx
alt_id: UBERON:FMA_46562-MA_0001768
comment: This class was created automatically from a combination of ontologies
synonym: "Laryngeal muscle" EXACT []
synonym: "laryngeal muscle" EXACT []
synonym: "larynx muscle" EXACT []
synonym: "Muscle of larynx" EXACT []
xref: BTO:0001626
xref: FMA:46562
xref: GAID:144
xref: MA:0001768
xref: ncithesaurus:Laryngeal_Muscle
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002377 ! muscle of neck
is_a: UBERON:0003831 ! implied link automatically realized ! respiratory system muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0001569
name: constrictor muscle of pharynx
alt_id: UBERON:FMA_46620-MA_0002278
def: "." [Wikipedia:Constrictor_muscle_of_pharynx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Constrictor muscle of pharynx" EXACT []
synonym: "Pharyngeal constrictor muscle" EXACT []
synonym: "pharyngeal constrictor muscle" EXACT []
xref: FMA:46620
xref: MA:0002278
is_a: UBERON:0000933 ! pharyngeal muscle
[Term]
id: UBERON:0001570
name: inferior pharyngeal constrictor
alt_id: UBERON:FMA_46623-MA_0002279
def: "." [Wikipedia:Inferior_pharyngeal_constrictor]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "constrictor muscle of pharynx inferior" EXACT []
synonym: "Inferior constrictor" EXACT []
synonym: "inferior constrictor" EXACT []
synonym: "Inferior constrictor of pharynx" EXACT []
synonym: "inferior constrictor of pharynx" EXACT []
synonym: "Inferior constrictor pharyngeus" EXACT []
synonym: "inferior constrictor pharyngeus" EXACT []
synonym: "Inferior pharyngeal constrictor" EXACT []
xref: FMA:46623
xref: MA:0002279
is_a: UBERON:0001569 ! constrictor muscle of pharynx
[Term]
id: UBERON:0001571
name: genioglossus
alt_id: UBERON:FMA_46690-MA_0002307
def: "." [Wikipedia:Genioglossus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Genioglossus" EXACT []
xref: EHDAA:9150
xref: FMA:46690
xref: HOG:0000847
xref: MA:0002307
xref: ncithesaurus:Genioglossus
is_a: UBERON:0001575 ! extrinsic muscle of tongue
is_a: UBERON:0003212 ! implied link automatically realized ! gustatory organ
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0001572
name: hyoglossus
alt_id: UBERON:FMA_46691-MA_0002317
def: "." [Wikipedia:Hyoglossus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hyoglossus" EXACT []
xref: FMA:46691
xref: MA:0002317
is_a: UBERON:0001575 ! extrinsic muscle of tongue
is_a: UBERON:0003212 ! implied link automatically realized ! gustatory organ
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0001573
name: styloglossus
alt_id: UBERON:FMA_46692-MA_0002387
def: "." [Wikipedia:Styloglossus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Styloglossus" EXACT []
xref: FMA:46692
xref: MA:0002387
xref: ncithesaurus:Styloglossus
is_a: UBERON:0001575 ! extrinsic muscle of tongue
is_a: UBERON:0003212 ! implied link automatically realized ! gustatory organ
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0001574
name: palatoglossus
alt_id: UBERON:FMA_46697-MA_0002351
def: "." [Wikipedia:Palatoglossus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Palatoglossus" EXACT []
xref: FMA:46697
xref: MA:0002351
is_a: UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0001575
name: extrinsic muscle of tongue
alt_id: UBERON:FMA_46699-MA_0002296
comment: This class was created automatically from a combination of ontologies
synonym: "Extrinsic muscle of tongue" EXACT []
synonym: "extrinsic tongue muscle" EXACT []
xref: FMA:46699
xref: HOG:0000825
xref: MA:0002296
is_a: UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0001576
name: intrinsic muscle of tongue
alt_id: UBERON:FMA_46701-MA_0002327
comment: This class was created automatically from a combination of ontologies
synonym: "Intrinsic lingual muscle" EXACT []
synonym: "intrinsic lingual muscle" EXACT []
synonym: "Intrinsic muscle of tongue" EXACT []
synonym: "intrinsic tongue muscle" EXACT []
xref: FMA:46701
xref: HOG:0000748
xref: MA:0002327
is_a: UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0001577
name: muscle of face
alt_id: UBERON:FMA_46751-XAO_0001013
def: "." [Wikipedia:Facial_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Face muscle" EXACT []
synonym: "face muscle" EXACT []
synonym: "Facial muscle" EXACT []
synonym: "facial muscle" EXACT []
synonym: "Muscle of face" EXACT []
xref: FMA:46751
xref: GAID:143
xref: ncithesaurus:Facial_Muscle
xref: XAO:0001013
is_a: UBERON:0002376 ! muscle of head
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0001578
name: orbicularis oculi
alt_id: UBERON:FMA_46779-MA_0001254
def: "." [Wikipedia:Orbicularis_oculi]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Orbicularis oculi" EXACT []
xref: FMA:46779
xref: MA:0001254
xref: ncithesaurus:Orbicularis_Oculi
is_a: UBERON:0000020 ! implied link automatically realized ! sense organ
is_a: UBERON:0001577 ! muscle of face
relationship: part_of UBERON:0001601 ! extra-ocular muscle
[Term]
id: UBERON:0001579
name: olfactory nerve
alt_id: UBERON:FMA_46787-MA_0001096-XAO_0000426-ZFA_0000249
def: "Segment of neural tree organ which is continuous with the olfactory epithelium and an olfactory bulb. // Cranial nerve that supplies the nasal organ." [ISBN:0471209627, Wikipedia:Olfactory_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CN-I" RELATED []
synonym: "cranial nerve I" RELATED []
synonym: "First cranial nerve" EXACT []
synonym: "first cranial nerve" EXACT []
synonym: "olfactory I nerve" EXACT []
synonym: "olfactory i nerve" EXACT []
synonym: "Olfactory nerve" EXACT []
synonym: "Olfactory nerve [I]" EXACT []
synonym: "olfactory nerve [i]" EXACT []
xref: BTO:0003648
xref: FMA:46787
xref: GAID:830
xref: HOG:0000703
xref: MA:0001096
xref: ncithesaurus:Olfactory_Nerve
xref: NIF_GrossAnatomy:birnlex_1319
xref: OpenCyc:Mx4rvZuXAJwpEbGdrcN5Y29ycA
xref: TAO:0000249
xref: XAO:0000426
xref: ZFA:0000249
is_a: UBERON:0001785 ! cranial nerve
relationship: develops_from UBERON:0003050 ! olfactory placode
[Term]
id: UBERON:0001580
name: levator labii superioris
alt_id: UBERON:FMA_46805-MA_0002333
def: "." [Wikipedia:Levator_labii_superioris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Levator labii superioris" EXACT []
xref: FMA:46805
xref: MA:0002333
xref: ncithesaurus:Levator_Labii_Superioris
is_a: UBERON:0001577 ! muscle of face
[Term]
id: UBERON:0001581
name: depressor labii inferioris
alt_id: UBERON:FMA_46816-MA_0002287
def: "." [Wikipedia:Depressor_labii_inferioris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Depressor labii inferioris" EXACT []
xref: FMA:46816
xref: MA:0002287
xref: ncithesaurus:Depressor_Labii_Inferioris
is_a: UBERON:0001577 ! muscle of face
[Term]
id: UBERON:0001582
name: buccinator
alt_id: UBERON:FMA_46834-MA_0002272
def: "." [Wikipedia:Buccinator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Buccinator" EXACT []
xref: FMA:46834
xref: MA:0002272
xref: ncithesaurus:Buccinator
is_a: UBERON:0001577 ! muscle of face
[Term]
id: UBERON:0001583
name: extrinsic auricular muscle
alt_id: UBERON:FMA_46854-MA_0001230
comment: This class was created automatically from a combination of ontologies
synonym: "Extrinsic auricular muscle" EXACT []
xref: FMA:46854
xref: MA:0001230
is_a: UBERON:0001595 ! auricular muscle
relationship: part_of UBERON:0001595 ! auricular muscle
[Term]
id: UBERON:0001584
name: left subclavian artery
alt_id: UBERON:FMA_4694-MA_0002046
def: "." [Wikipedia:Left_subclavian_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Left subclavian artery" EXACT []
xref: FMA:4694
xref: MA:0002046
xref: ncithesaurus:Left_Subclavian_Artery
xref: OpenCyc:Mx4rtW7hw6gEEdudWQACs5b6Bw
is_a: UBERON:0001533 ! subclavian artery
[Term]
id: UBERON:0001585
name: superior vena cava
alt_id: UBERON:FMA_4720-MA_0000481
def: "Trunk of systemic vein which is formed by the union of the right and left brachiocephalic veins and terminates in the right atrium." [Wikipedia:Superior_vena_cava]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anterior vena cava" EXACT []
synonym: "anterior vena cava" EXACT []
synonym: "Superior vena cava" EXACT []
xref: BTO:0002683
xref: EHDAA:8726
xref: FMA:4720
xref: GAID:549
xref: HOG:0001195
xref: MA:0000481
xref: ncithesaurus:Superior_Vena_Cava
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001009 ! circulatory system
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0001586
name: internal jugular vein
alt_id: UBERON:FMA_4724-MA_0002157
def: "." [Wikipedia:Internal_jugular_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Internal jugular vein" EXACT []
synonym: "Internal jugular venous tree" EXACT []
synonym: "internal jugular venous tree" EXACT []
xref: EHDAA:5407
xref: FMA:4724
xref: galen:InternalJugularVein
xref: MA:0002157
xref: ncithesaurus:Internal_Jugular_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001587
name: subclavian vein
alt_id: UBERON:FMA_4725-MA_0002221
def: "." [Wikipedia:Subclavian_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Subclavian vein" EXACT []
synonym: "Subclavian venous tree" EXACT []
synonym: "subclavian venous tree" EXACT []
xref: EHDAA:4455
xref: FMA:4725
xref: GAID:546
xref: MA:0002221
xref: ncithesaurus:Subclavian_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001588
name: vertebral vein
alt_id: UBERON:FMA_4727-MA_0002262
def: "." [Wikipedia:Vertebral_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Vertebral vein" EXACT []
xref: FMA:4727
xref: MA:0002262
xref: ncithesaurus:Vertebral_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001589
name: internal thoracic vein
alt_id: UBERON:FMA_4729-MA_0002237
def: "." [Wikipedia:Internal_thoracic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Internal thoracic vein" EXACT []
xref: FMA:4729
xref: MA:0002237
xref: ncithesaurus:Internal_Thoracic_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001590
name: pericardiacophrenic vein
alt_id: UBERON:FMA_4742-MA_0002187
def: "Vena comitans of the pericardiacophrenic arteries." [Wikipedia:Pericardiacophrenic_veins]
comment: This class was created automatically from a combination of ontologies
synonym: "Pericardiacophrenic vein" EXACT []
xref: FMA:4742
xref: MA:0002187
xref: ncithesaurus:Pericardiacophrenic_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001591
name: thymic vein
alt_id: UBERON:FMA_4747-MA_0002246
comment: This class was created automatically from a combination of ontologies
synonym: "Thymic tributary of brachiocephalic vein" EXACT []
synonym: "thymic tributary of brachiocephalic vein" EXACT []
synonym: "Thymic vein" EXACT []
xref: FMA:4747
xref: MA:0002246
xref: ncithesaurus:Thymic_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001592
name: bronchial vein
alt_id: UBERON:FMA_4749-MA_0002088
def: "." [Wikipedia:Bronchial_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bronchial vein" EXACT []
synonym: "Bronchial venous tree" EXACT []
synonym: "bronchial venous tree" EXACT []
xref: FMA:4749
xref: MA:0002088
xref: ncithesaurus:Bronchial_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001593
name: venous plexus
alt_id: UBERON:FMA_4767-MA_0000069
def: "a congregation of multiple veins." [Wikipedia:Venous_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Venous network" EXACT []
synonym: "venous network" EXACT []
synonym: "Venous plexus" EXACT []
xref: FMA:4767
xref: MA:0000069
is_a: UBERON:0000063 ! organ segment
relationship: has_part UBERON:0001638 ! vein
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0001594
name: azygos vein
alt_id: UBERON:FMA_4838-MA_0002085
def: "." [Wikipedia:Azygos_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Azygos vein" EXACT []
synonym: "Azygos venous tree" EXACT []
synonym: "azygos venous tree" EXACT []
xref: FMA:4838
xref: GAID:528
xref: galen:AzygosVein
xref: MA:0002085
xref: ncithesaurus:Azygos_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001595
name: auricular muscle
alt_id: UBERON:FMA_48966-MA_0001229
comment: This class was created automatically from a combination of ontologies
synonym: "Auricular muscle" EXACT []
synonym: "Muscle of auricle" EXACT []
synonym: "muscle of auricle" EXACT []
xref: FMA:48966
xref: MA:0001229
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0001596
name: intrinsic auricular muscle
alt_id: UBERON:FMA_48967-MA_0001231
comment: This class was created automatically from a combination of ontologies
synonym: "Intrinsic auricular muscle" EXACT []
xref: FMA:48967
xref: MA:0001231
is_a: UBERON:0001595 ! auricular muscle
relationship: part_of UBERON:0001595 ! auricular muscle
[Term]
id: UBERON:0001597
name: masseter
alt_id: UBERON:FMA_48996-MA_0002343
def: "." [Wikipedia:Masseter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Masseter" EXACT []
xref: BTO:0001755
xref: EHDAA:10561
xref: FMA:48996
xref: HOG:0000823
xref: MA:0002343
is_a: UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0001598
name: temporalis
alt_id: UBERON:FMA_49006-MA_0002390
def: "." [Wikipedia:Temporalis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Temporal muscle" EXACT []
synonym: "temporal muscle" EXACT []
synonym: "Temporalis" EXACT []
xref: EHDAA:10565
xref: FMA:49006
xref: GAID:148
xref: HOG:0000929
xref: MA:0002390
xref: ncithesaurus:Temporal_Muscle
is_a: UBERON:0002376 ! muscle of head
relationship: part_of UBERON:0001444 ! subdivision of head
[Term]
id: UBERON:0001599
name: stapedius
alt_id: UBERON:FMA_49027-MA_0001220
def: "." [Wikipedia:Stapedius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Stapedius" EXACT []
xref: FMA:49027
xref: GAID:164
xref: MA:0001220
relationship: part_of UBERON:0001756 ! middle ear
[Term]
id: UBERON:0001600
name: tensor tympani
alt_id: UBERON:FMA_49028-MA_0001221
def: "." [Wikipedia:Tensor_tympani]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Eustachian muscle" EXACT []
synonym: "eustachian muscle" EXACT []
synonym: "Tensor tympani" EXACT []
xref: FMA:49028
xref: GAID:166
xref: MA:0001221
xref: ncithesaurus:Tensor_Tympani
relationship: part_of UBERON:0001756 ! middle ear
[Term]
id: UBERON:0001601
name: extra-ocular muscle
alt_id: UBERON:FMA_49033-MA_0000271
def: "." [Wikipedia:Extra-ocular_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Extra-ocular muscle" EXACT []
synonym: "Extraocular muscle" EXACT []
synonym: "extraocular muscle" EXACT []
synonym: "Extrinsic muscle of eyeball" EXACT []
synonym: "extrinsic muscle of eyeball" EXACT []
synonym: "eye muscle" EXACT []
xref: AAO:0000156
xref: BTO:0001579
xref: EFO:0001921
xref: FMA:49033
xref: HOG:0000549
xref: MA:0000271
is_a: UBERON:0000020 ! implied link automatically realized ! sense organ
is_a: UBERON:0001577 ! muscle of face
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0001602
name: medial rectus
alt_id: UBERON:FMA_49037-ZFA_0000301
def: "." [Wikipedia:Medial_rectus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Medial rectus" EXACT []
xref: FMA:49037
xref: TAO:0000301
xref: ZFA:0000301
is_a: UBERON:0001601 ! extra-ocular muscle
relationship: part_of UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0001603
name: lateral rectus
alt_id: UBERON:FMA_49038-ZFA_0000383
def: "." [Wikipedia:Lateral_rectus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lateral rectus" EXACT []
xref: FMA:49038
xref: TAO:0000383
xref: ZFA:0000383
is_a: UBERON:0001601 ! extra-ocular muscle
relationship: part_of UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0001604
name: levator palpebrae superioris
alt_id: UBERON:FMA_49041-MA_0001272
def: "." [Wikipedia:Levator_palpebrae_superioris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Levator palpebrae superioris" EXACT []
xref: FMA:49041
xref: MA:0001272
xref: ncithesaurus:Levator_Palpebrae_Superioris
is_a: UBERON:0001601 ! extra-ocular muscle
is_a: UBERON:0003660 ! implied link automatically realized ! eyelid muscle
relationship: part_of UBERON:0001601 ! extra-ocular muscle
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0001605
name: ciliary muscle
alt_id: UBERON:FMA_49151-MA_0001269
def: "." [Wikipedia:Ciliary_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ciliary muscle" EXACT []
xref: BTO:0000654
xref: FMA:49151
xref: MA:0001269
xref: ncithesaurus:Ciliary_Muscle
is_a: UBERON:0001601 ! extra-ocular muscle
relationship: part_of UBERON:0001775 ! ciliary body
[Term]
id: UBERON:0001606
name: muscle of iris
alt_id: UBERON:FMA_49154-MA_0001287
def: "." [Wikipedia:Iris_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Iris muscle" EXACT []
synonym: "iris muscle" EXACT []
synonym: "Muscle of iris" EXACT []
xref: FMA:49154
xref: MA:0001287
is_a: UBERON:0000020 ! implied link automatically realized ! sense organ
is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001769 ! iris
relationship: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0001607
name: sphincter pupillae
alt_id: UBERON:FMA_49157-MA_0001289
def: "." [Wikipedia:Sphincter_pupillae]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sphincter pupillae" EXACT []
xref: FMA:49157
xref: MA:0001289
is_a: UBERON:0001606 ! muscle of iris
[Term]
id: UBERON:0001608
name: dilatator pupillae
alt_id: UBERON:FMA_49158-MA_0001288
def: "." [Wikipedia:Dilator_pupillae]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Dilatator pupillae" EXACT []
synonym: "Dilator muscle of pupil" EXACT []
synonym: "dilator muscle of pupil" EXACT []
synonym: "Dilator of pupil" EXACT []
synonym: "dilator of pupil" EXACT []
synonym: "Dilator pupillae" EXACT []
synonym: "dilator pupillae" EXACT []
xref: FMA:49158
xref: MA:0001288
is_a: UBERON:0001606 ! muscle of iris
[Term]
id: UBERON:0001609
name: isthmus of thyroid gland
alt_id: UBERON:FMA_49178-MA_0000727
def: "." [Wikipedia:Thyroid_isthmus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Isthmus glandulae thyroideae" EXACT []
synonym: "isthmus glandulae thyroideae" EXACT []
synonym: "Isthmus of thyroid gland" EXACT []
synonym: "Thyroid gland isthmus" EXACT []
synonym: "thyroid gland isthmus" EXACT []
synonym: "Thyroid isthmus" EXACT []
synonym: "thyroid isthmus" EXACT []
xref: FMA:49178
xref: MA:0000727
xref: ncithesaurus:Thyroid_Gland_Isthmus
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002046 ! thyroid follicle
[Term]
id: UBERON:0001610
name: lingual artery
alt_id: UBERON:FMA_49526-MA_0001992
def: "The lingual artery arises from the external carotid between the superior thyroid and facial artery[WP]." [Wikipedia:Lingual_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lingual artery" EXACT []
synonym: "Lingual branch of external carotid artery" EXACT []
synonym: "lingual branch of external carotid artery" EXACT []
xref: FMA:49526
xref: MA:0001992
xref: ncithesaurus:Lingual_Artery
xref: OpenCyc:Mx4rvfqDCZwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001611
name: sublingual artery
alt_id: UBERON:FMA_49543-MA_0002049
def: "." [Wikipedia:Sublingual_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sublingual artery" EXACT []
synonym: "Sublingual branch of lingual artery" EXACT []
synonym: "sublingual branch of lingual artery" EXACT []
xref: FMA:49543
xref: MA:0002049
xref: ncithesaurus:Sublingual_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001612
name: facial artery
alt_id: UBERON:FMA_49549-MA_0001950
def: "." [Wikipedia:Facial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "External maxillary artery" EXACT []
synonym: "external maxillary artery" EXACT []
synonym: "Facial artery" EXACT []
xref: FMA:49549
xref: MA:0001950
xref: ncithesaurus:Facial_Artery
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0001613
name: occipital artery
alt_id: UBERON:FMA_49586-MA_0002009
def: "." [Wikipedia:Occipital_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Occipital artery" EXACT []
xref: FMA:49586
xref: MA:0002009
xref: ncithesaurus:Occipital_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001614
name: superficial temporal artery
alt_id: UBERON:FMA_49650-MA_0002062
def: "." [Wikipedia:Superficial_temporal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Superficial temporal artery" EXACT []
xref: BTO:0003747
xref: FMA:49650
xref: MA:0002062
xref: OpenCyc:Mx4rv33WkZwpEbGdrcN5Y29ycA
is_a: UBERON:0001632 ! temporal artery
[Term]
id: UBERON:0001615
name: transverse facial artery
alt_id: UBERON:FMA_49657-MA_0002068
def: "." [Wikipedia:Transverse_facial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Transverse facial artery" EXACT []
xref: FMA:49657
xref: MA:0002068
xref: ncithesaurus:Transverse_Facial_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001616
name: maxillary artery
alt_id: UBERON:FMA_49675-MA_0001919
def: "." [Wikipedia:Maxillary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Internal maxillary artery" EXACT []
synonym: "internal maxillary artery" EXACT []
synonym: "Maxillary artery" EXACT []
xref: EHDAA:7357
xref: FMA:49675
xref: GAID:498
xref: MA:0001919
xref: ncithesaurus:Maxillary_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001617
name: mental artery
alt_id: UBERON:FMA_49701-MA_0002002
def: "." [Wikipedia:Mental_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Mental artery" EXACT []
synonym: "Mental branch of inferior alveolar artery" EXACT []
synonym: "mental branch of inferior alveolar artery" EXACT []
xref: FMA:49701
xref: MA:0002002
xref: ncithesaurus:Mental_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001618
name: buccal artery
alt_id: UBERON:FMA_49754-MA_0001924
def: "." [Wikipedia:Buccal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Buccal artery" EXACT []
xref: FMA:49754
xref: MA:0001924
xref: ncithesaurus:Buccal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001619
name: ophthalmic artery
alt_id: UBERON:FMA_49868-MA_0002011
def: "." [Wikipedia:Ophthalmic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ophthalmic artery" EXACT []
xref: EHDAA:7363
xref: FMA:49868
xref: GAID:503
xref: MA:0002011
xref: OpenCyc:Mx4rvcCxpJwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001620
name: central retinal artery
alt_id: UBERON:FMA_49879-MA_0002038
def: "." [Wikipedia:Central_retinal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Central artery of retina" EXACT []
synonym: "central artery of retina" EXACT []
synonym: "Central retinal artery" EXACT []
synonym: "Retinal artery" EXACT []
synonym: "retinal artery" EXACT []
synonym: "Zinn's artery" EXACT []
synonym: "zinn's artery" EXACT []
xref: FMA:49879
xref: GAID:508
xref: MA:0002038
xref: ncithesaurus:Retinal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001621
name: coronary artery
alt_id: UBERON:FMA_49893-MA_0002453
def: "Systemic artery which supplies the heart." [Wikipedia:Coronary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Coronary arterial tree" EXACT []
synonym: "coronary arterial tree" EXACT []
synonym: "Coronary artery" EXACT []
xref: BTO:0000290
xref: EFO:0002551
xref: FMA:49893
xref: galen:CoronaryArtery
xref: MA:0002453
xref: ncithesaurus:Coronary_Artery
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003498 ! implied link automatically realized ! heart blood vessel
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0001622
name: lacrimal artery
alt_id: UBERON:FMA_49927-MA_0001988
def: "." [Wikipedia:Lacrimal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lacrimal artery" EXACT []
xref: FMA:49927
xref: MA:0001988
xref: ncithesaurus:Lacrimal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001623
name: dorsal nasal artery
alt_id: UBERON:FMA_50000-MA_0001945
def: "." [Wikipedia:Dorsal_nasal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Dorsal nasal artery" EXACT []
synonym: "Dorsal nasal branch of ophthalmic artery" EXACT []
synonym: "dorsal nasal branch of ophthalmic artery" EXACT []
synonym: "External nasal artery" EXACT []
synonym: "external nasal artery" EXACT []
xref: FMA:50000
xref: MA:0001945
xref: ncithesaurus:Dorsal_Nasal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001624
name: anterior cerebral artery
alt_id: UBERON:FMA_50028-MA_0001915
def: "." [Wikipedia:Anterior_cerebral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anterior cerebral artery" EXACT []
xref: EHDAA:5296
xref: FMA:50028
xref: GAID:485
xref: MA:0001915
xref: ncithesaurus:Anterior_Cerebral_Artery
xref: OpenCyc:Mx4rv8biO5wpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001625
name: right coronary artery
alt_id: UBERON:FMA_50039-MA_0002455
def: "Coronary artery which emerges from the anterior aortic sinus, between the right auricle and the pulmonary trunk, and supplies the right side of the heart." [Wikipedia:Right_coronary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Right coronary arterial tree" EXACT []
synonym: "right coronary arterial tree" EXACT []
synonym: "Right coronary artery" EXACT []
xref: FMA:50039
xref: MA:0002455
xref: ncithesaurus:Right_Coronary_Artery
is_a: UBERON:0001621 ! coronary artery
[Term]
id: UBERON:0001626
name: left coronary artery
alt_id: UBERON:FMA_50040-MA_0002454
def: "Coronary artery which emerges from the left posterior aortic sinus, between the left auricle and the pulmonary trunk, and supplies the left side of the heart." [Wikipedia:Left_coronary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Left coronary arterial tree" EXACT []
synonym: "left coronary arterial tree" EXACT []
synonym: "Left coronary artery" EXACT []
xref: FMA:50040
xref: MA:0002454
xref: ncithesaurus:Left_Coronary_Artery
is_a: UBERON:0001621 ! coronary artery
[Term]
id: UBERON:0001627
name: middle cerebral artery
alt_id: UBERON:FMA_50079-MA_0001935
def: "." [Wikipedia:Middle_cerebral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Middle cerebral artery" EXACT []
synonym: "Sylvian artery" EXACT []
synonym: "sylvian artery" EXACT []
xref: EHDAA:5298
xref: FMA:50079
xref: GAID:487
xref: MA:0001935
xref: ncithesaurus:Middle_Cerebral_Artery
xref: OpenCyc:Mx4rvh3qQ5wpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001628
name: posterior communicating artery
alt_id: UBERON:FMA_50084-MA_0002023-ZFA_0005001
def: "An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery. Isogai et al. 2001." [Wikipedia:Posterior_communicating_artery, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "caudal communicating segment" RELATED []
synonym: "PCA" RELATED []
synonym: "PCS" RELATED []
synonym: "Posterior communicating artery" EXACT []
synonym: "posterior communicating segment of the basilar artery" RELATED []
xref: EHDAA:3352
xref: FMA:50084
xref: MA:0002023
xref: ncithesaurus:Posterior_Communicating_Artery
xref: TAO:0005001
xref: ZFA:0005001
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001629
name: carotid body
alt_id: UBERON:FMA_50095-MA_0002463
def: "." [Wikipedia:Carotid_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Carotid body" EXACT []
xref: BTO:0000204
xref: FMA:50095
xref: GAID:813
xref: MA:0002463
xref: ncithesaurus:Carotid_Body
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0001630
name: muscle organ
alt_id: UBERON:FMA_5022-MIAA_0000302-XAO_0000174
def: "Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]. Nonparenchymatous organ that primarily consists of skeletal muscle tissue aggregated into macroscopic fasciculi by connective tissue; together with other muscles, it constitutes the muscular system. Examples: biceps, diaphragm, masseter, right third external intercostal muscle, external oblique, levator ani, serratus anterior[FMA]. // A body tissue consisting of long cells that contract when stimulated and produce motion. // Portion of tissue composed of contractile fibers." [GO:0007517, Wikipedia:Skeletal_muscle]
subset: uberon_slim
synonym: "adult somatic muscle" RELATED []
synonym: "Muscle organ" EXACT []
xref: BTO:0001103
xref: FMA:5022
xref: GAID:131
xref: MA:0000015
xref: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA
xref: TAO:0005145
xref: XAO:0000172
xref: ZFA:0005145
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001015 ! muscle system
[Term]
id: UBERON:0001631
name: thoracic duct
alt_id: UBERON:FMA_5031-ZFA_0005110
def: "Lymphatic trunk that connects all tributaries of the thoracic duct tree to the trunk of the left brachiocephalic vein. Examples: There is only one thoracic duct tree." [Wikipedia:Thoracic_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Thoracic duct" EXACT []
synonym: "Trunk of thoracic duct tree" EXACT []
synonym: "trunk of thoracic duct tree" EXACT []
xref: FMA:5031
xref: GAID:1290
xref: MA:0002801
xref: ncithesaurus:Thoracic_Duct
xref: TAO:0005110
xref: ZFA:0005110
is_a: UBERON:0001473 ! lymphatic vessel
relationship: develops_from UBERON:0002065 ! postcardinal vein
[Term]
id: UBERON:0001632
name: temporal artery
alt_id: UBERON:FMA_50438-MA_0002061
def: "." [Wikipedia:Temporal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Temporal artery" EXACT []
xref: FMA:50438
xref: GAID:489
xref: MA:0002061
xref: ncithesaurus:Temporal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001633
name: basilar artery
alt_id: UBERON:FMA_50542-MA_0001920-ZFA_0005002
def: "." [Wikipedia:Basilar_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "BA" RELATED []
synonym: "Basilar artery" EXACT []
xref: EHDAA:5285
xref: FMA:50542
xref: GAID:474
xref: HOG:0000237
xref: MA:0001920
xref: ncithesaurus:Basilar_Artery
xref: TAO:0005002
xref: ZFA:0005002
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
relationship: part_of UBERON:0002200 ! vasculature of head
[Term]
id: UBERON:0001634
name: mesencephalic artery
alt_id: UBERON:FMA_50570-ZFA_0001068
def: "Develops from the proximal portion of the primitive mesencephalic artery. Isogai et al.2001." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Mesencephalic artery" EXACT []
synonym: "MsA" RELATED []
xref: FMA:50570
xref: TAO:0001068
xref: ZFA:0001068
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001635
name: superior cerebellar artery
alt_id: UBERON:FMA_50573-MA_0001934
def: "." [Wikipedia:Superior_cerebellar_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Superior cerebellar artery" EXACT []
xref: FMA:50573
xref: MA:0001934
xref: ncithesaurus:Superior_Cerebellar_Artery
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel
relationship: part_of UBERON:0001633 ! basilar artery
[Term]
id: UBERON:0001636
name: posterior cerebral artery
alt_id: UBERON:FMA_50583-MA_0002022
def: "." [Wikipedia:Posterior_cerebral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Posterior cerebral artery" EXACT []
xref: FMA:50583
xref: GAID:488
xref: MA:0002022
xref: ncithesaurus:Posterior_Cerebral_Artery
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel
relationship: part_of UBERON:0001633 ! basilar artery
[Term]
id: UBERON:0001637
name: artery
alt_id: UBERON:FMA_50720-MA_0000061-MA_0000064-MIAA_0000034-XAO_0000114-ZFA_0000005
def: "A vessel carrying blood away from the heart" [GO:0014824]
comment: in FMA an artery is a tree
subset: uberon_slim
synonym: "arterial blood vessel" EXACT []
synonym: "Arterial subtree" EXACT []
synonym: "arterial subtree" EXACT []
synonym: "arterial system" RELATED []
synonym: "Arterial tree organ part" EXACT []
synonym: "arterial tree organ part" EXACT []
synonym: "Arterial vessel" EXACT []
synonym: "arterial vessel" EXACT []
synonym: "Artery" EXACT []
xref: BTO:0000573
xref: EFO:0000814
xref: FMA:50720
xref: GAID:468
xref: galen:Artery
xref: HOG:0001251
xref: MA:0000064
xref: MAT:0000034
xref: MIAA:0000034
xref: ncithesaurus:Artery
xref: OpenCyc:Mx4rvVjknZwpEbGdrcN5Y29ycA
xref: TAO:0000005
xref: XAO:0000114
xref: ZFA:0000005
is_a: UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0001638
name: vein
alt_id: UBERON:FMA_50723-MA_0000066-MA_0000067-MIAA_0000037-XAO_0000115-ZFA_0000082
def: "Subdivision of venous tree (organ) which consists of branching sets of tubes (venous trunks) that form a tree; together with other venous trees (organ part), it constitutes a venous tree (organ). Examples: subclavian venous tree, jugular tree, extrahepatic portal tree, common iliac venous tree. // Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [NLM:vein, Wikipedia:Vein]
comment: TODO - check with MA - vein vs venous blood vessel
subset: uberon_slim
synonym: "Vein" EXACT []
synonym: "venous blood vessel" EXACT []
synonym: "Venous subtree" EXACT []
synonym: "venous subtree" EXACT []
synonym: "venous system" RELATED []
synonym: "Venous tree organ part" EXACT []
synonym: "venous tree organ part" EXACT []
synonym: "Venous vessel" EXACT []
synonym: "venous vessel" EXACT []
xref: BTO:0000234
xref: EFO:0000816
xref: FMA:50723
xref: GAID:492
xref: HOG:0001252
xref: MA:0000067
xref: MAT:0000037
xref: MIAA:0000037
xref: ncithesaurus:Vein
xref: OpenCyc:Mx4rvVjkWpwpEbGdrcN5Y29ycA
xref: TAO:0000082
xref: XAO:0000115
xref: ZFA:0000082
is_a: UBERON:0003920 ! venous blood vessel
[Term]
id: UBERON:0001639
name: hepatic portal vein
alt_id: UBERON:FMA_50735-MA_0002132-ZFA_0005090
def: "." [Wikipedia:Hepatic_portal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hepatic portal tree" EXACT []
synonym: "hepatic portal tree" EXACT []
synonym: "Hepatic portal vein" EXACT []
synonym: "HPV" RELATED []
synonym: "primary hepatic portal veins" RELATED []
xref: FMA:50735
xref: HOG:0000642
xref: MA:0002132
xref: TAO:0005090
xref: ZFA:0005090
is_a: UBERON:0001143 ! implied link automatically realized ! hepatic vein
is_a: UBERON:0002017 ! portal vein
intersection_of: UBERON:0002017 ! portal vein
intersection_of: part_of UBERON:0002107 ! liver
[Term]
id: UBERON:0001640
name: celiac artery
alt_id: UBERON:FMA_50737-MA_0001931
def: "." [Wikipedia:Celiac_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Celiac artery" EXACT []
synonym: "Celiac tree" EXACT []
synonym: "celiac tree" EXACT []
synonym: "Coeliac artery" EXACT []
synonym: "coeliac artery" RELATED []
xref: FMA:50737
xref: GAID:483
xref: MA:0001931
xref: ncithesaurus:Coeliac_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0001641
name: transverse sinus
alt_id: UBERON:FMA_50763-MA_0001868
def: "." [Wikipedia:Transverse_sinus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lateral sinus" EXACT []
synonym: "lateral sinus" EXACT []
synonym: "Transverse sinus" EXACT []
xref: FMA:50763
xref: MA:0001868
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001642
name: superior sagittal sinus
alt_id: UBERON:FMA_50767-MA_0001867
def: "." [Wikipedia:Superior_sagittal_sinus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Superior sagittal sinus" EXACT []
xref: FMA:50767
xref: MA:0001867
xref: ncithesaurus:Superior_Sagittal_Sinus
xref: OpenCyc:Mx4rv9naEJwpEbGdrcN5Y29ycA
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001643
name: oculomotor nerve
alt_id: UBERON:FMA_50864-MA_0001095-XAO_0003090-ZFA_0000405
def: "Cranial nerve which connects the midbrain to the extra-ocular and intra-ocular muscles. // Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Oculomotor_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CN-III" RELATED []
synonym: "cranial nerve III" RELATED []
synonym: "occulomotor" RELATED []
synonym: "oculomotor III nerve" EXACT []
synonym: "oculomotor iii nerve" EXACT []
synonym: "Oculomotor nerve" EXACT []
synonym: "Oculomotor nerve [III]" EXACT []
synonym: "oculomotor nerve [iii]" EXACT []
synonym: "Oculomotor nerve tree" EXACT []
synonym: "oculomotor nerve tree" EXACT []
synonym: "Third cranial nerve" EXACT []
synonym: "third cranial nerve" EXACT []
xref: FMA:50864
xref: GAID:829
xref: HOG:0000692
xref: MA:0001095
xref: ncithesaurus:Oculomotor_Nerve
xref: NIF_GrossAnatomy:birnlex_1646
xref: TAO:0000405
xref: XAO:0003090
xref: ZFA:0000405
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0001644
name: trochlear nerve
alt_id: UBERON:FMA_50865-MA_0001105-XAO_0003091-ZFA_0000600
def: "Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Trochlear_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CN-IV" RELATED []
synonym: "cranial nerve IV" RELATED []
synonym: "Fourth cranial nerve" EXACT []
synonym: "fourth cranial nerve" EXACT []
synonym: "pathetic nerve" RELATED []
synonym: "Superior oblique nerve" EXACT []
synonym: "superior oblique nerve" EXACT []
synonym: "trochlear" RELATED []
synonym: "trochlear IV nerve" EXACT []
synonym: "trochlear iv nerve" EXACT []
synonym: "Trochlear nerve" EXACT []
synonym: "Trochlear nerve [IV]" EXACT []
synonym: "trochlear nerve [iv]" EXACT []
synonym: "Trochlear nerve tree" EXACT []
synonym: "trochlear nerve tree" EXACT []
xref: FMA:50865
xref: GAID:838
xref: HOG:0000705
xref: MA:0001105
xref: ncithesaurus:Trochlear_Nerve
xref: NIF_GrossAnatomy:birnlex_1654
xref: TAO:0000600
xref: XAO:0003091
xref: ZFA:0000600
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0001645
name: trigeminal nerve
alt_id: UBERON:FMA_50866-MA_0001100-XAO_0003092-ZFA_0000697
def: "Cranial nerve that branches into the ophthalmic (supplying the skin of the nose and upper jaw) and the mandibular (supplying the lower jaw)." [ISBN:0471209627, Wikipedia:Trigeminal_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CN-V" RELATED []
synonym: "cranial nerve V" RELATED []
synonym: "Fifth cranial nerve" EXACT []
synonym: "fifth cranial nerve" EXACT []
synonym: "Trigeminal nerve" EXACT []
synonym: "Trigeminal nerve [V]" EXACT []
synonym: "trigeminal nerve [v]" EXACT []
synonym: "Trigeminal nerve tree" EXACT []
synonym: "trigeminal nerve tree" EXACT []
synonym: "trigeminal V nerve" EXACT []
synonym: "trigeminal v nerve" EXACT []
xref: BTO:0001072
xref: EFO:0001402
xref: FMA:50866
xref: GAID:726
xref: HOG:0000704
xref: MA:0001100
xref: ncithesaurus:Trigeminal_Nerve
xref: NIF_GrossAnatomy:birnlex_869
xref: TAO:0000697
xref: XAO:0003092
xref: ZFA:0000697
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0001646
name: abducens nerve
alt_id: UBERON:FMA_50867-MA_0001087-XAO_0003093-ZFA_0000310
def: "Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Abducens_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Abducens nerve" EXACT []
synonym: "Abducens nerve [VI]" EXACT []
synonym: "abducens nerve [vi]" EXACT []
synonym: "Abducens nerve tree" EXACT []
synonym: "abducens nerve tree" EXACT []
synonym: "abducens VI nerve" EXACT []
synonym: "abducens vi nerve" EXACT []
synonym: "Abducent nerve" EXACT []
synonym: "abducent nerve" RELATED []
synonym: "Abducent nerve [VI]" EXACT []
synonym: "abducent nerve [vi]" EXACT []
synonym: "CN-VI" RELATED []
synonym: "cranial nerve VI" RELATED []
synonym: "Lateral rectus nerve" EXACT []
synonym: "lateral rectus nerve" EXACT []
synonym: "Nervus abducens" EXACT []
synonym: "nervus abducens" EXACT []
synonym: "Sixth cranial nerve" EXACT []
synonym: "sixth cranial nerve" EXACT []
xref: FMA:50867
xref: GAID:824
xref: HOG:0000697
xref: MA:0001087
xref: ncithesaurus:Abducens_Nerve
xref: NIF_GrossAnatomy:birnlex_876
xref: TAO:0000310
xref: XAO:0003093
xref: ZFA:0000310
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0001647
name: facial nerve
alt_id: UBERON:FMA_50868-MA_0001091-XAO_0003094-ZFA_0000664
def: "Cranial nerve that branches into the supraorbital (supplying the skin of the eye region and the lateral line organs here), the palatine (to the roof of the buccal cavity), and the hyomandibular (dividing into the jugular and mental branches)." [ISBN:0471209627, Wikipedia:Facial_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Branchiomeric cranial nerve" EXACT []
synonym: "branchiomeric cranial nerve" EXACT []
synonym: "CN-VII" RELATED []
synonym: "cranial nerve VII" RELATED []
synonym: "Facial nerve" EXACT []
synonym: "Facial nerve [VII]" EXACT []
synonym: "facial nerve [vii]" EXACT []
synonym: "Facial nerve tree" EXACT []
synonym: "facial nerve tree" EXACT []
synonym: "facial VII nerve" EXACT []
synonym: "facial vii nerve" EXACT []
synonym: "Seventh cranial nerve" EXACT []
synonym: "seventh cranial nerve" EXACT []
xref: FMA:50868
xref: GAID:719
xref: HOG:0000706
xref: MA:0001091
xref: ncithesaurus:Facial_Nerve
xref: NIF_GrossAnatomy:birnlex_827
xref: TAO:0000664
xref: XAO:0003094
xref: ZFA:0000664
is_a: UBERON:0001785 ! cranial nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0001033 ! gustatory system
[Term]
id: UBERON:0001648
name: vestibulocochlear nerve
alt_id: UBERON:FMA_50869-FMA_53431-MA_0001109-XAO_0003095-ZFA_0000247
def: "Cranial nerve that runs to the ear." [ISBN:0471209627, Wikipedia:Vestibulocochlear_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Acoustic nerve" EXACT []
synonym: "acoustic nerve" EXACT []
synonym: "Acoustic nerve (Crosby)" EXACT []
synonym: "acoustic nerve (crosby)" EXACT []
synonym: "Auditory nerve" EXACT []
synonym: "auditory nerve" EXACT []
synonym: "CN-VIII" RELATED []
synonym: "Cochlear nerve" EXACT []
synonym: "cochlear nerve" EXACT []
synonym: "Cochlear root of acoustic nerve" EXACT []
synonym: "cochlear root of acoustic nerve" EXACT []
synonym: "Cochlear root of eighth cranial nerve" EXACT []
synonym: "cochlear root of eighth cranial nerve" EXACT []
synonym: "Cochlear-vestibular nerve" EXACT []
synonym: "cochlear-vestibular nerve" EXACT []
synonym: "Cochleovestibular nerve" EXACT []
synonym: "cochleovestibular nerve" EXACT []
synonym: "cranial nerve VIII" RELATED []
synonym: "Eighth cranial nerve" EXACT []
synonym: "eighth cranial nerve" EXACT []
synonym: "octaval nerve" RELATED []
synonym: "Stato-acoustic nerve" EXACT []
synonym: "stato-acoustic nerve" EXACT []
synonym: "Statoacoustic nerve" EXACT []
synonym: "statoacoustic nerve" RELATED []
synonym: "Vestibulocochlear nerve" EXACT []
synonym: "Vestibulocochlear nerve [VIII]" EXACT []
synonym: "vestibulocochlear nerve [viii]" EXACT []
synonym: "Vestibulocochlear nerve tree" EXACT []
synonym: "vestibulocochlear nerve tree" EXACT []
synonym: "vestibulocochlear VIII nerve" EXACT []
synonym: "vestibulocochlear viii nerve" EXACT []
xref: BTO:0003490
xref: FMA:50869
xref: FMA:53431
xref: GAID:723
xref: GAID:839
xref: HOG:0000695
xref: MA:0001109
xref: ncithesaurus:Cochlear_Nerve
xref: NIF_GrossAnatomy:birnlex_890
xref: OpenCyc:Mx4rvVjMFZwpEbGdrcN5Y29ycA
xref: TAO:0000247
xref: XAO:0003095
xref: ZFA:0000247
is_a: UBERON:0001785 ! cranial nerve
relationship: continuous_with UBERON:0001844 ! cochlea
[Term]
id: UBERON:0001649
name: glossopharyngeal nerve
alt_id: UBERON:FMA_50870-MA_0001093-XAO_0003096-ZFA_0000668
def: "Cranial nerve that branches into the ramus communicans (to the skin), the pretrematic (to the walls of the pharynx and mouth, viscero-sensory fibers), and the larval post-trematic branch (lost in the adult)." [ISBN:0471209627, Wikipedia:Glossopharyngeal_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CN-IX" RELATED []
synonym: "cranial nerve IX" RELATED []
synonym: "glossopharyngeal IX nerve" EXACT []
synonym: "glossopharyngeal ix nerve" EXACT []
synonym: "Glossopharyngeal nerve" EXACT []
synonym: "Glossopharyngeal nerve [IX]" EXACT []
synonym: "glossopharyngeal nerve [ix]" EXACT []
synonym: "Glossopharyngeal nerve tree" EXACT []
synonym: "glossopharyngeal nerve tree" EXACT []
synonym: "Ninth cranial nerve" EXACT []
synonym: "ninth cranial nerve" EXACT []
xref: FMA:50870
xref: GAID:827
xref: HOG:0000701
xref: MA:0001093
xref: ncithesaurus:Glossopharyngeal_Nerve
xref: NIF_GrossAnatomy:birnlex_899
xref: TAO:0000668
xref: XAO:0003096
xref: ZFA:0000668
is_a: UBERON:0001785 ! cranial nerve
relationship: part_of UBERON:0001033 ! gustatory system
[Term]
id: UBERON:0001650
name: hypoglossal nerve
alt_id: UBERON:FMA_50871-MA_0001094
def: "Nerve that innervates all the intrinsic and all but one of the extrinsic muscles of the tongue." [GO:0021566, Wikipedia:Hypoglossal_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hypoglossal nerve" EXACT []
synonym: "Hypoglossal nerve [XII]" EXACT []
synonym: "hypoglossal nerve [xii]" EXACT []
synonym: "Hypoglossal nerve tree" EXACT []
synonym: "hypoglossal nerve tree" EXACT []
synonym: "hypoglossal XII nerve" EXACT []
synonym: "hypoglossal xii nerve" EXACT []
synonym: "Twelfth cranial nerve" EXACT []
synonym: "twelfth cranial nerve" EXACT []
xref: BTO:0003386
xref: FMA:50871
xref: GAID:828
xref: HOG:0000693
xref: MA:0001094
xref: ncithesaurus:Hypoglossal_Nerve
xref: NIF_GrossAnatomy:birnlex_820
xref: OpenCyc:Mx4rv9eWA5wpEbGdrcN5Y29ycA
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0001651
name: right pulmonary artery
alt_id: UBERON:FMA_50872-MA_0002500
def: "." [Wikipedia:Right_pulmonary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Right main pulmonary artery" EXACT []
synonym: "right main pulmonary artery" EXACT []
synonym: "Right pulmonary arterial tree" EXACT []
synonym: "right pulmonary arterial tree" EXACT []
synonym: "Right pulmonary artery" EXACT []
xref: FMA:50872
xref: MA:0002500
xref: ncithesaurus:Right_Pulmonary_Artery
is_a: UBERON:0002012 ! pulmonary artery
[Term]
id: UBERON:0001652
name: left pulmonary artery
alt_id: UBERON:FMA_50873-MA_0002032
def: "." [Wikipedia:Left_pulmonary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Left main pulmonary artery" EXACT []
synonym: "left main pulmonary artery" EXACT []
synonym: "Left pulmonary arterial tree" EXACT []
synonym: "left pulmonary arterial tree" EXACT []
synonym: "Left pulmonary artery" EXACT []
xref: FMA:50873
xref: galen:LeftPulmonaryArtery
xref: MA:0002032
xref: ncithesaurus:Left_Pulmonary_Artery
is_a: UBERON:0002012 ! pulmonary artery
[Term]
id: UBERON:0001653
name: facial vein
alt_id: UBERON:FMA_50874-MA_0002115
def: "." [Wikipedia:Facial_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Facial vein" EXACT []
xref: FMA:50874
xref: MA:0002115
xref: ncithesaurus:Facial_Vein
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0001654
name: supra-orbital vein
alt_id: UBERON:FMA_50904-MA_0002228
def: "." [Wikipedia:Supra-orbital_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Supra-orbital vein" EXACT []
synonym: "Supraorbital vein" EXACT []
synonym: "supraorbital vein" EXACT []
xref: FMA:50904
xref: MA:0002228
xref: ncithesaurus:Supra-orbital_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001655
name: submental vein
alt_id: UBERON:FMA_50925-MA_0002223
comment: This class was created automatically from a combination of ontologies
synonym: "Submental vein" EXACT []
xref: FMA:50925
xref: MA:0002223
xref: ncithesaurus:Submental_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001656
name: retromandibular vein
alt_id: UBERON:FMA_50928-MA_0002117
def: "." [Wikipedia:Retromandibular_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "posterior facial vein" EXACT []
synonym: "Retromandibular vein" EXACT []
xref: FMA:50928
xref: MA:0002117
xref: ncithesaurus:Temporo-maxillary_Vein
xref: OpenCyc:Mx4rv0bn95wpEbGdrcN5Y29ycA
is_a: UBERON:0001653 ! facial vein
[Term]
id: UBERON:0001657
name: superficial temporal vein
alt_id: UBERON:FMA_50932-MA_0002242
def: "." [Wikipedia:Superficial_temporal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Superficial temporal vein" EXACT []
xref: BTO:0003748
xref: FMA:50932
xref: MA:0002242
xref: ncithesaurus:Superficial_Temporal_Vein
is_a: UBERON:0001671 ! temporal vein
[Term]
id: UBERON:0001658
name: middle temporal vein
alt_id: UBERON:FMA_50935-MA_0002241
comment: This class was created automatically from a combination of ontologies
synonym: "Middle temporal vein" EXACT []
xref: FMA:50935
xref: MA:0002241
is_a: UBERON:0001671 ! temporal vein
[Term]
id: UBERON:0001659
name: transverse facial vein
alt_id: UBERON:FMA_50938-MA_0002247
def: "." [Wikipedia:Transverse_facial_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Transverse facial vein" EXACT []
xref: FMA:50938
xref: MA:0002247
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001660
name: maxillary vein
alt_id: UBERON:FMA_50941-MA_0002169
def: "." [Wikipedia:Maxillary_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Maxillary vein" EXACT []
xref: FMA:50941
xref: MA:0002169
xref: ncithesaurus:Internal_Maxillary_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001661
name: deep temporal vein
alt_id: UBERON:FMA_50954-MA_0002240
comment: This class was created automatically from a combination of ontologies
synonym: "Deep temporal vein" EXACT []
xref: FMA:50954
xref: MA:0002240
xref: ncithesaurus:Deep_Temporal_Vein
is_a: UBERON:0001671 ! temporal vein
[Term]
id: UBERON:0001662
name: anterior auricular vein
alt_id: UBERON:FMA_50956-MA_0002083
comment: This class was created automatically from a combination of ontologies
synonym: "Anterior auricular vein" EXACT []
xref: FMA:50956
xref: MA:0002083
xref: ncithesaurus:Anterior_Auricular_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001663
name: cerebral vein
alt_id: UBERON:FMA_50981-MA_0002096
comment: This class was created automatically from a combination of ontologies
synonym: "Cerebral vein" EXACT []
xref: FMA:50981
xref: GAID:530
xref: MA:0002096
xref: ncithesaurus:Cerebral_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001664
name: inferior cerebral vein
alt_id: UBERON:FMA_50986-MA_0002097
def: "." [Wikipedia:Inferior_cerebral_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Inferior cerebral vein" EXACT []
xref: FMA:50986
xref: MA:0002097
is_a: UBERON:0001663 ! cerebral vein
[Term]
id: UBERON:0001665
name: triceps surae
alt_id: UBERON:FMA_51062-MA_0002400
def: "." [Wikipedia:Triceps_surae]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sural triceps" RELATED []
synonym: "Triceps surae" EXACT []
xref: FMA:51062
xref: MA:0002400
xref: ncithesaurus:Triceps_Surae
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0001666
name: flexor digitorum longus
alt_id: UBERON:FMA_51071-MA_0002299
def: "." [Wikipedia:Flexor_digitorum_longus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Flexor digitorum longus" EXACT []
xref: BTO:0000466
xref: FMA:51071
xref: MA:0002299
xref: ncithesaurus:Flexor_Digitorum_Longus
is_a: UBERON:0001383 ! muscle of leg
[Term]
id: UBERON:0001667
name: tibialis posterior
alt_id: UBERON:FMA_51099-MA_0002394
def: "." [Wikipedia:Tibialis_posterior]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "tibialis caudalis" EXACT []
synonym: "Tibialis posterior" EXACT []
xref: BTO:0000867
xref: FMA:51099
xref: MA:0002394
xref: ncithesaurus:Tibialis_Caudalis
is_a: UBERON:0001383 ! muscle of leg
[Term]
id: UBERON:0001668
name: cerebellar vein
alt_id: UBERON:FMA_51227-MA_0002093
comment: This class was created automatically from a combination of ontologies
synonym: "Cerebellar vein" EXACT []
xref: FMA:51227
xref: MA:0002093
xref: ncithesaurus:Cerebellar_Vein
is_a: UBERON:0001638 ! vein
is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum
is_a: UBERON:0003499 ! implied link automatically realized ! brain blood vessel
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0001669
name: superior cerebellar vein
alt_id: UBERON:FMA_51232-MA_0002095
def: "." [Wikipedia:Superior_cerebellar_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Superior cerebellar vein" EXACT []
synonym: "Vein of superior cerebellar hemisphere" EXACT []
synonym: "vein of superior cerebellar hemisphere" EXACT []
xref: FMA:51232
xref: MA:0002095
is_a: UBERON:0001668 ! cerebellar vein
[Term]
id: UBERON:0001670
name: inferior cerebellar vein
alt_id: UBERON:FMA_51233-MA_0002094
def: "." [Wikipedia:Inferior_cerebellar_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Inferior cerebellar vein" EXACT []
synonym: "Inferior vein of cerebellar hemisphere" EXACT []
synonym: "inferior vein of cerebellar hemisphere" EXACT []
xref: FMA:51233
xref: MA:0002094
is_a: UBERON:0001668 ! cerebellar vein
[Term]
id: UBERON:0001671
name: temporal vein
alt_id: UBERON:FMA_51302-MA_0002239
def: "." [Wikipedia:Temporal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Temporal vein" EXACT []
xref: FMA:51302
xref: MA:0002239
xref: ncithesaurus:Temporal_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001672
name: anterior cerebral vein
alt_id: UBERON:FMA_51306-ZFA_0001067
comment: This class was created automatically from a combination of ontologies
synonym: "ACeV" RELATED []
synonym: "Anterior cerebral vein" EXACT []
synonym: "rostral cerebral vein" RELATED []
xref: FMA:51306
xref: TAO:0001067
xref: ZFA:0001067
is_a: UBERON:0001663 ! cerebral vein
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
relationship: part_of UBERON:0002200 ! vasculature of head
[Term]
id: UBERON:0001673
name: central retinal vein
alt_id: UBERON:FMA_51799-MA_0002213
def: "." [Wikipedia:Central_retinal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Central retinal vein" EXACT []
synonym: "retinal vein" EXACT []
xref: FMA:51799
xref: GAID:524
xref: MA:0002213
xref: ncithesaurus:Retinal_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001674
name: masseteric vein
alt_id: UBERON:FMA_52519-MA_0002167
comment: This class was created automatically from a combination of ontologies
synonym: "Masseteric vein" EXACT []
xref: FMA:52519
xref: MA:0002167
xref: ncithesaurus:Masseteric_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0001675
name: trigeminal ganglion
alt_id: UBERON:FMA_52618-XAO_0000427-XAO_0000428-ZFA_0000295
def: "A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. Kimmel et al, 1995." [Wikipedia:Trigeminal_ganglion, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "gasserian ganglia" RELATED []
synonym: "Gasserian ganglion" EXACT []
synonym: "gasserian ganglion" EXACT []
synonym: "gV" RELATED []
synonym: "Semilunar ganglion" EXACT []
synonym: "semilunar ganglion" EXACT []
synonym: "trigeminal ganglia" RELATED []
synonym: "Trigeminal ganglion" EXACT []
synonym: "trigeminus ganglion" RELATED []
xref: BTO:0001231
xref: EFO:0000903
xref: FMA:52618
xref: GAID:725
xref: MAT:0000511
xref: ncithesaurus:Trigeminal_Ganglion
xref: TAO:0000295
xref: XAO:0000427
xref: XAO:0000428
xref: ZFA:0000295
is_a: UBERON:0001714 ! ganglion of cranial nerve
relationship: develops_from UBERON:0003070 ! trigeminal placode
[Term]
id: UBERON:0001676
name: occipital bone
alt_id: UBERON:FMA_52735-MA_0001468
def: "." [Wikipedia:Occipital_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Occipital bone" EXACT []
xref: FMA:52735
xref: GAID:227
xref: MA:0001468
xref: ncithesaurus:Occipital_Bone
is_a: UBERON:0001474 ! bone
[Term]
id: UBERON:0001677
name: sphenoid bone
alt_id: UBERON:FMA_52736-MA_0001472
def: "." [Wikipedia:Sphenoid_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sphenoid" EXACT []
synonym: "sphenoid" EXACT []
synonym: "Sphenoid bone" EXACT []
synonym: "Sphenoidal bone" EXACT []
synonym: "sphenoidal bone" EXACT []
xref: FMA:52736
xref: GAID:230
xref: MA:0001472
xref: ncithesaurus:Sphenoid_Bone
is_a: UBERON:0001474 ! bone
[Term]
id: UBERON:0001678
name: temporal bone
alt_id: UBERON:FMA_52737-MA_0001476
def: "." [Wikipedia:Temporal_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Temporal bone" EXACT []
xref: EHDAA:6035
xref: FMA:52737
xref: GAID:232
xref: HOG:0000800
xref: MA:0001476
xref: ncithesaurus:Temporal_Bone
xref: OpenCyc:Mx4rvbkAk5wpEbGdrcN5Y29ycA
is_a: UBERON:0001474 ! bone
[Term]
id: UBERON:0001679
name: ethmoid
alt_id: UBERON:FMA_52740-MA_0001483-ZFA_0000323
def: "Median unpaired cartilage bone that ossifies as a perichondral lamellae ensheathing the nasal septum anterodorsally and laterally (Harrington, 1955). In adult D. rerio, the center of the mesethmoid remains cartilaginous (Cubbage & Mabee, 1996). The mesethmoid meets the supraethmoid dorsally, the lateral ethmoids posterolaterally, and the vomer and parasphenoid ventrally in synostoses. Anterolaterally the mesthmoid meets the preethmoids in synchondroses." [Wikipedia:Ethmoid, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ethmoid" EXACT []
synonym: "ethmoid bone" EXACT []
synonym: "Ethmoidal bone" EXACT []
synonym: "ethmoidal bone" EXACT []
synonym: "mesethmoid bone" EXACT []
xref: FMA:52740
xref: GAID:212
xref: MA:0001483
xref: ncithesaurus:Ethmoid_Bone
xref: TAO:0000323
xref: ZFA:0000323
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone
is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue
relationship: part_of UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0001680
name: lacrimal bone
alt_id: UBERON:FMA_52741-MA_0001486
def: "." [Wikipedia:Lacrimal_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lacrimal bone" EXACT []
synonym: "lacrymal bone" RELATED []
xref: FMA:52741
xref: HOG:0001149
xref: MA:0001486
xref: ncithesaurus:Lacrimal_Bone
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0001681
name: nasal bone
alt_id: UBERON:FMA_52745-MA_0001494-ZFA_0000365
def: "Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish Cubbage and Mabee, 1996." [Wikipedia:Nasal_bone, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Nasal bone" EXACT []
xref: FMA:52745
xref: GAID:222
xref: HOG:0001370
xref: MA:0001494
xref: ncithesaurus:Nasal_Bone
xref: TAO:0000365
xref: ZFA:0000365
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone
relationship: part_of UBERON:0000004 ! olfactory apparatus
relationship: part_of UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0001682
name: palatine bone
alt_id: UBERON:FMA_52746-MA_0001495
def: "." [Wikipedia:Palatine_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Palatine bone" EXACT []
xref: FMA:52746
xref: MA:0001495
xref: ncithesaurus:Palatine_Bone
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0001683
name: zygomatic bone
alt_id: UBERON:FMA_52747-MA_0001497
def: "." [Wikipedia:Zygomatic_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cheek bone" EXACT []
synonym: "cheek bone" EXACT []
synonym: "Orbital bone" EXACT []
synonym: "orbital bone" EXACT []
synonym: "Zygomatic bone" EXACT []
xref: FMA:52747
xref: MA:0001497
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001567 ! cheek
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0001684
name: mandible
alt_id: UBERON:FMA_52748-MA_0001487
def: "." [Wikipedia:Mandible]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lower jaw bone" EXACT []
synonym: "lower jaw bone" EXACT []
synonym: "Mandible" EXACT []
synonym: "Mandibulla" EXACT []
synonym: "mandibulla" EXACT []
xref: BTO:0001748
xref: EFO:0001965
xref: EHDAA:8007
xref: FMA:52748
xref: GAID:68
xref: HAO:0000506
xref: MA:0001487
xref: ncithesaurus:Mandible
is_a: UBERON:0001474 ! bone
is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001710 ! lower jaw
relationship: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0001685
name: hyoid bone
alt_id: UBERON:FMA_52749-MA_0001484
def: "." [Wikipedia:Hyoid_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hyoid bone" EXACT []
xref: AAO:0000684
xref: FMA:52749
xref: GAID:197
xref: MA:0001484
xref: ncithesaurus:Hyoid_Bone
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0001686
name: auditory ossicle
alt_id: UBERON:FMA_52750-MA_0000254-XAO_0000214
def: "." [Wikipedia:Auditory_ossicle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "auditory bone" EXACT []
synonym: "Auditory ossicle" EXACT []
synonym: "ear bone" RELATED []
xref: FMA:52750
xref: HOG:0000461
xref: MA:0000254
xref: ncithesaurus:Auditory_Ossicle
xref: XAO:0000214
is_a: UBERON:0000020 ! implied link automatically realized ! sense organ
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001756 ! middle ear
[Term]
id: UBERON:0001687
name: stapes
alt_id: UBERON:FMA_52751-MA_0001217
def: "." [Wikipedia:Stapes]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Stapes" EXACT []
synonym: "Stirrup" EXACT []
synonym: "stirrup" EXACT []
xref: FMA:52751
xref: GAID:868
xref: MA:0001217
xref: ncithesaurus:Stapes
xref: OpenCyc:Mx4rv5UnkZwpEbGdrcN5Y29ycA
is_a: UBERON:0001686 ! auditory ossicle
[Term]
id: UBERON:0001688
name: incus
alt_id: UBERON:FMA_52752-MA_0001215
def: "." [Wikipedia:Incus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Incus" EXACT []
xref: FMA:52752
xref: GAID:866
xref: MA:0001215
xref: ncithesaurus:Incus
is_a: UBERON:0001686 ! auditory ossicle
[Term]
id: UBERON:0001689
name: malleus
alt_id: UBERON:FMA_52753-MA_0001216
def: "." [Wikipedia:Malleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Malleus" EXACT []
xref: FMA:52753
xref: GAID:867
xref: MA:0001216
xref: ncithesaurus:Malleus
is_a: UBERON:0001686 ! auditory ossicle
[Term]
id: UBERON:0001690
name: ear
alt_id: UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
def: "Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "auditory apparatus" RELATED []
synonym: "Ear" EXACT []
synonym: "otic vesicle" RELATED []
xref: BTO:0000368
xref: EFO:0000826
xref: EHDAA:502
xref: FMA:52780
xref: GAID:62
xref: galen:Ear
xref: HOG:0000330
xref: MA:0000236
xref: MAT:0000138
xref: MIAA:0000138
xref: ncithesaurus:Ear
xref: NIF_GrossAnatomy:birnlex_1062
xref: OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA
xref: XAO:0000189
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0000033 ! head
relationship: part_of UBERON:0002105 ! auditory system
[Term]
id: UBERON:0001691
name: external ear
alt_id: UBERON:FMA_52781-MA_0000258-MIAA_0000147-XAO_0000190
def: "Part of the ear external to the tympanum (eardrum). It consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull[GO]." [GO:0042473, Wikipedia:External_ear]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Auricular region" EXACT []
synonym: "auricular region" EXACT []
synonym: "Auricular region of head" EXACT []
synonym: "auricular region of head" EXACT []
synonym: "External ear" EXACT []
synonym: "outer ear" EXACT []
xref: BTO:0002100
xref: EHDAA:3786
xref: EHDAA:5343
xref: EHDAA:5352
xref: FMA:52781
xref: GAID:104
xref: HOG:0000311
xref: MA:0000258
xref: MAT:0000147
xref: MIAA:0000147
xref: ncithesaurus:External_Ear
xref: NIF_GrossAnatomy:birnlex_1705
xref: XAO:0000190
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001690 ! ear
[Term]
id: UBERON:0001692
name: basilar part of occipital bone
alt_id: UBERON:FMA_52858-MA_0001462-ZFA_0000472
def: "Large median unpaired cartilage bone that contacts the exocciptal, epiotic and pterotic dorsally, and the parasphenoid anteriorly. Forms the posteroventral hind margin of the cranium, articulates with the centrum of the first vertebra. Bears a posteroventral pharyngeal process that is flattened ventrally and opposes the pharyngeal teeth of the fifth pair of ceratobranchials." [Wikipedia:Basilar_part_of_occipital_bone, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Basilar part of occipital bone" EXACT []
synonym: "Basioccipital" EXACT []
synonym: "basioccipital" EXACT []
synonym: "basioccipital bone" EXACT []
xref: AAO:0000039
xref: FMA:52858
xref: HOG:0001152
xref: MA:0001462
xref: TAO:0000472
xref: ZFA:0000472
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone
relationship: part_of UBERON:0002021 ! occipital lobe
[Term]
id: UBERON:0001693
name: lateral part of occipital bone
alt_id: UBERON:FMA_52859-MA_0001464-ZFA_0000661
def: "Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Exoccipital" EXACT []
synonym: "exoccipital" EXACT []
synonym: "exoccipital bone" EXACT []
synonym: "Lateral part of occipital bone" EXACT []
xref: AAO:0000147
xref: FMA:52859
xref: HOG:0001151
xref: MA:0001464
xref: TAO:0000661
xref: ZFA:0000661
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone
relationship: part_of UBERON:0002021 ! occipital lobe
[Term]
id: UBERON:0001694
name: petrous part of temporal bone
alt_id: UBERON:FMA_52871-MA_0001477
def: "." [Wikipedia:Petrous_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pars petrosa (os temporale)" EXACT []
synonym: "pars petrosa (os temporale)" EXACT []
synonym: "Petromastoid part of temporal bone" EXACT []
synonym: "petromastoid part of temporal bone" EXACT []
synonym: "Petrosal bone" EXACT []
synonym: "petrosal bone" EXACT []
synonym: "Petrous bone" EXACT []
synonym: "petrous bone" EXACT []
synonym: "Petrous part of temporal bone" EXACT []
synonym: "temporal bone petrous part" EXACT []
xref: FMA:52871
xref: GAID:234
xref: MA:0001477
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001678 ! temporal bone
[Term]
id: UBERON:0001695
name: squamous part of temporal bone
alt_id: UBERON:FMA_52883-MA_0001473
comment: This class was created automatically from a combination of ontologies
synonym: "Pars squamosa (os temporale)" EXACT []
synonym: "pars squamosa (os temporale)" EXACT []
synonym: "squamosal bone" EXACT []
synonym: "Squamous bone" EXACT []
synonym: "squamous bone" EXACT []
synonym: "Squamous part of temporal bone" EXACT []
xref: FMA:52883
xref: MA:0001473
is_a: UBERON:0001474 ! bone
[Term]
id: UBERON:0001696
name: alveolar process of maxilla
alt_id: UBERON:FMA_52897-MA_0001492
def: "." [Wikipedia:Alveolar_process_of_maxilla]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Alveolar part of maxilla" EXACT []
synonym: "alveolar part of maxilla" EXACT []
synonym: "Alveolar process of maxilla" EXACT []
synonym: "maxilla alveolar process" EXACT []
synonym: "Processus alveolaris (maxilla)" EXACT []
synonym: "processus alveolaris (maxilla)" EXACT []
xref: FMA:52897
xref: MA:0001492
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0002397 ! maxilla
[Term]
id: UBERON:0001697
name: orbit
alt_id: UBERON:FMA_53074-MA_0002482
def: "." [Wikipedia:Orbit_(anatomy)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Orbit" EXACT []
synonym: "Orbit of skull" EXACT []
synonym: "orbit of skull" EXACT []
xref: AAO:0000343
xref: FMA:53074
xref: GAID:223
xref: HAO:0000672
xref: MA:0002482
xref: ncithesaurus:Orbit
xref: OpenCyc:Mx4rvW8EgZwpEbGdrcN5Y29ycA
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001456 ! face
[Term]
id: UBERON:0001698
name: foramen ovale
alt_id: UBERON:FMA_53155-MA_0001873
def: "." [Wikipedia:Foramen_ovale]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Foramen ovale" EXACT []
xref: EHDAA:10627
xref: FMA:53155
xref: galen:ForamenOvale
xref: HOG:0001189
xref: MA:0001873
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002085 ! interatrial septum
[Term]
id: UBERON:0001699
name: sensory root of facial nerve
alt_id: UBERON:FMA_53410-ZFA_0000679
def: "." [Wikipedia:Intermediate_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Intermediate nerve" EXACT []
synonym: "intermediate nerve" EXACT []
synonym: "Sensory root of facial nerve" EXACT []
synonym: "Wrisberg's nerve" EXACT []
synonym: "wrisberg's nerve" EXACT []
xref: FMA:53410
xref: TAO:0000679
xref: ZFA:0000679
is_a: UBERON:0002211 ! segment of nerve
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0001700
name: geniculate ganglion
alt_id: UBERON:FMA_53414-MA_0001076-ZFA_0001291
def: "." [Wikipedia:Geniculate_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "facial ganglion" EXACT []
synonym: "facial VII ganglion" EXACT []
synonym: "facial vii ganglion" EXACT []
synonym: "Ganglion genicularum" EXACT []
synonym: "ganglion genicularum" EXACT []
synonym: "Genicular ganglion" EXACT []
synonym: "genicular ganglion" EXACT []
synonym: "Geniculate ganglion" EXACT []
synonym: "gVII" RELATED []
xref: EHDAA:5567
xref: EHDAA:6644
xref: FMA:53414
xref: GAID:718
xref: HOG:0000707
xref: MA:0001076
xref: ncithesaurus:Geniculate_Ganglion
xref: TAO:0001291
xref: ZFA:0001291
is_a: UBERON:0002420 ! basal ganglia
[Term]
id: UBERON:0001701
name: glossopharyngeal ganglion
alt_id: UBERON:FMA_53471-ZFA_0001301
comment: This class was created automatically from a combination of ontologies
synonym: "Ganglion of glosspharyngeal nerve" EXACT []
synonym: "ganglion of glosspharyngeal nerve" EXACT []
synonym: "gIX" RELATED []
synonym: "Glossopharyngeal ganglion" EXACT []
synonym: "petrosal ganglion" RELATED []
xref: FMA:53471
xref: TAO:0001301
xref: ZFA:0001301
is_a: UBERON:0001714 ! ganglion of cranial nerve
is_a: UBERON:0003338 ! implied link automatically realized ! ganglion of peripheral nervous system
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0001702
name: eyelash
alt_id: UBERON:FMA_53669-MA_0002702
def: "." [Wikipedia:Eyelash]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Eyelash" EXACT []
xref: FMA:53669
xref: GAID:73
xref: MA:0002702
xref: ncithesaurus:Eyelash
xref: OpenCyc:Mx4rvVi41pwpEbGdrcN5Y29ycA
is_a: UBERON:0001037 ! hair
[Term]
id: UBERON:0001703
name: neurocranium
alt_id: UBERON:FMA_53672-ZFA_0001580
def: "Portion of the cranium which encloses the brain." [Wikipedia:Cranium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Brain Box" EXACT []
synonym: "brain box" EXACT []
synonym: "Neurocranium" EXACT []
xref: FMA:53672
xref: TAO:0001580
xref: ZFA:0001580
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0001704
name: viscerocranium
alt_id: UBERON:FMA_53673-MA_0000318
comment: This class was created automatically from a combination of ontologies
synonym: "facial bone" RELATED []
synonym: "Facial skeleton" EXACT []
synonym: "facial skeleton" EXACT []
synonym: "Viscerocranium" EXACT []
xref: EHDAA:8361
xref: FMA:53673
xref: HOG:0000315
xref: MA:0000318
is_a: UBERON:0000075 ! implied link automatically realized ! subdivision of skeleton
intersection_of: UBERON:0000075 ! subdivision of skeleton
intersection_of: part_of UBERON:0001456 ! face
relationship: part_of UBERON:0002090 ! axial skeleton
[Term]
id: UBERON:0001705
name: nail
alt_id: UBERON:FMA_54326-MA_0002703-MIAA_0000158
def: "a horn-like structure at the end of an animal's finger or toe." [Wikipedia:Nail_(anatomy)]
comment: TODO: check claw vs nail
subset: uberon_slim
synonym: "claw" RELATED []
synonym: "Nail" EXACT []
synonym: "Nail plate" EXACT []
synonym: "nail plate" EXACT []
xref: EFO:0000956
xref: FMA:54326
xref: GAID:1320
xref: MA:0002703
xref: MAT:0000158
xref: MIAA:0000158
xref: ncithesaurus:Nail
xref: OpenCyc:Mx4rvVjJv5wpEbGdrcN5Y29ycA
xref: XAO:0003103
is_a: UBERON:0000026 ! appendage
relationship: part_of UBERON:0002544 ! digit
[Term]
id: UBERON:0001706
name: nasal septum
alt_id: UBERON:FMA_54375-MA_0000285
def: "." [Wikipedia:Nasal_septum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Nasal septum" EXACT []
xref: EHDAA:6809
xref: FMA:54375
xref: GAID:115
xref: HOG:0000017
xref: MA:0000285
xref: ncithesaurus:Nasal_Septum
xref: OpenCyc:Mx4rv7e-k5wpEbGdrcN5Y29ycA
is_a: UBERON:0003037 ! septum
relationship: part_of UBERON:0000004 ! olfactory apparatus
[Term]
id: UBERON:0001707
name: nasal cavity
alt_id: UBERON:FMA_54378-MA_0000284-ZFA_0000130
def: "an indentation of the olfactory placode, and ends when the pits hollows out to form the nasopharynx." [Wikipedia:Nasal_cavity]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cavity of nose" EXACT []
synonym: "cavity of nose" EXACT []
synonym: "Nasal cavity" EXACT []
synonym: "nasal pit" RELATED []
synonym: "olfactory cavity" RELATED []
synonym: "olfactory pit" EXACT []
xref: AAO:0000314
xref: BTO:0002096
xref: EHDAA:4772
xref: EHDAA:6801
xref: FMA:54378
xref: GAID:350
xref: HOG:0000271
xref: MA:0000284
xref: ncithesaurus:Nasal_Cavity
xref: TAO:0000130
xref: ZFA:0000130
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0000004 ! olfactory apparatus
relationship: part_of UBERON:0001557 ! upper respiratory tract
[Term]
id: UBERON:0001708
name: jaw
alt_id: UBERON:FMA_54396-MA_0001905-ZFA_0001227
def: "Skeletal and cartilagenous elements of the first pharyngeal arch." [Wikipedia:Jaw, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Jaw" EXACT []
synonym: "jaw cartilage" RELATED []
synonym: "jaws" RELATED []
synonym: "mandibular arch" EXACT []
synonym: "oral jaw skeleton" RELATED []
synonym: "pharyngeal arch 1 skeleton" RELATED []
synonym: "visceral arch 1" RELATED []
xref: BTO:0001749
xref: FMA:54396
xref: GAID:214
xref: galen:Jaw
xref: MA:0001905
xref: ncithesaurus:Jaw
xref: OpenCyc:Mx4rvVjjEZwpEbGdrcN5Y29ycA
xref: TAO:0001227
xref: ZFA:0001227
is_a: UBERON:0002539 ! pharyngeal arch
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0001709
name: upper jaw
alt_id: UBERON:FMA_54397-MA_0001908-XAO_0003087-ZFA_0001272
def: "The dorsal portion of the first pharyngeal arch, comprising the upper jaw." [Wikipedia:Upper_jaw, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dorsal mandibular arch" RELATED []
synonym: "dorsal visceral arch 2" RELATED []
synonym: "palatoquadrate arch" EXACT []
synonym: "Upper jaw" EXACT []
synonym: "upper pharyngeal jaws" RELATED []
xref: AAO:0000620
xref: EHDAA:8025
xref: FMA:54397
xref: HOG:0000454
xref: MA:0001908
xref: ncithesaurus:Upper_Jaw
xref: TAO:0001272
xref: XAO:0003087
xref: ZFA:0001272
relationship: part_of UBERON:0001708 ! jaw
[Term]
id: UBERON:0001710
name: lower jaw
alt_id: UBERON:FMA_54398-MA_0001906-XAO_0003084-ZFA_0001273
def: "The ventral portion of the first pharyngeal arch, comprising the lower jaw." [Wikipedia:Lower_jaw, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lower jaw" EXACT []
synonym: "mandible" RELATED []
synonym: "mandibular series" RELATED []
synonym: "ventral mandibular arch" EXACT []
xref: AAO:0000272
xref: EHDAA:7995
xref: FMA:54398
xref: HOG:0000453
xref: MA:0001906
xref: ncithesaurus:Lower_Jaw
xref: TAO:0001273
xref: XAO:0003084
xref: ZFA:0001273
relationship: part_of UBERON:0001708 ! jaw
[Term]
id: UBERON:0001711
name: eyelid
alt_id: UBERON:FMA_54437-MA_0000268
def: "." [Wikipedia:Eyelid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Blepharon" EXACT []
synonym: "blepharon" EXACT []
synonym: "Eyelid" EXACT []
synonym: "Palpebra" EXACT []
synonym: "palpebra" RELATED []
xref: BTO:0002241
xref: EHDAA:9037
xref: FMA:54437
xref: GAID:72
xref: HOG:0000016
xref: MA:0000268
xref: ncithesaurus:Eyelid
xref: OpenCyc:Mx4rvVi4m5wpEbGdrcN5Y29ycA
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0001712
name: upper eyelid
alt_id: UBERON:FMA_54439-MA_0001267
def: "." [Wikipedia:Upper_eyelid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Superior eyelid" EXACT []
synonym: "superior eyelid" EXACT []
synonym: "Upper eyelid" EXACT []
xref: FMA:54439
xref: HOG:0000389
xref: MA:0001267
xref: ncithesaurus:Upper_Eyelid
xref: OpenCyc:Mx4rvg4ohJwpEbGdrcN5Y29ycA
is_a: UBERON:0001711 ! eyelid
[Term]
id: UBERON:0001713
name: lower eyelid
alt_id: UBERON:FMA_54442-MA_0001263-XAO_0000007
def: "." [Wikipedia:Lower_eyelid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Inferior eyelid" EXACT []
synonym: "inferior eyelid" EXACT []
synonym: "Lower eyelid" EXACT []
xref: FMA:54442
xref: HOG:0000388
xref: MA:0001263
xref: ncithesaurus:Lower_Eyelid
xref: OpenCyc:Mx4rvW6GtJwpEbGdrcN5Y29ycA
xref: XAO:0000007
is_a: UBERON:0001711 ! eyelid
is_a: UBERON:0003102 ! surface structure
[Term]
id: UBERON:0001714
name: ganglion of cranial nerve
alt_id: UBERON:FMA_54502-MA_0000213
def: "." [Wikipedia:Cranial_nerve_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cranial ganglion/nerve" EXACT []
synonym: "Cranial nerve ganglion" EXACT []
synonym: "cranial nerve ganglion" EXACT []
synonym: "Cranial neural ganglion" EXACT []
synonym: "cranial neural ganglion" EXACT []
synonym: "Ganglion of cranial nerve" EXACT []
xref: FMA:54502
xref: MA:0000213
is_a: UBERON:0000045 ! ganglion
is_a: UBERON:0003339 ! implied link automatically realized ! ganglion of central nervous system
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0001785 ! cranial nerve
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0001715
name: oculomotor nuclear complex
alt_id: UBERON:FMA_54510-ZFA_0000553
def: "." [Wikipedia:Nucleus_of_oculomotor_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "motor nucleus III" RELATED []
synonym: "nIII" RELATED []
synonym: "Nucleus of oculomotor nerve" EXACT []
synonym: "nucleus of oculomotor nerve" EXACT []
synonym: "Nucleus of third cranial nerve" EXACT []
synonym: "nucleus of third cranial nerve" EXACT []
synonym: "Oculomotor nuclear complex" EXACT []
synonym: "Oculomotor nucleus" EXACT []
synonym: "oculomotor nucleus" EXACT []
synonym: "Third cranial nerve nucleus" EXACT []
synonym: "third cranial nerve nucleus" EXACT []
xref: EFO:0002468
xref: FMA:54510
xref: ncithesaurus:Oculomotor_Nucleus
xref: NIF_GrossAnatomy:birnlex_1240
xref: TAO:0000553
xref: ZFA:0000553
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001716
name: palate
alt_id: UBERON:FMA_54549-FMA_55023-MA_0002476-MA_0002477-MIAA_0000161
def: "Partition that separates the nasal and oral cavities[GO]." [GO:0060021, Wikipedia:Palate]
comment: The soft palate is movable, consisting of muscle fibers sheathed in mucous membrane. It is responsible for closing off the nasal passages during the act of swallowing, and also for closing off the airway. During sneezing, it protects the nasal passage by diverting a portion of the excreted substance to the mouth.
subset: uberon_slim
synonym: "oral roof" EXACT []
synonym: "Palate" EXACT []
synonym: "roof of mouth" EXACT []
xref: BTO:0001779
xref: FMA:54549
xref: GAID:152
xref: MA:0002476
xref: ncithesaurus:Palate
is_a: UBERON:0000061 ! anatomical structure
relationship: adjacent_to UBERON:0000167 ! oral cavity
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0001717
name: spinal nucleus of trigeminal nerve
alt_id: UBERON:FMA_54565-MA_0001053
def: "." [Wikipedia:Spinal_trigeminal_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Spinal nucleus of cranial nerve V" EXACT []
synonym: "spinal nucleus of cranial nerve v" EXACT []
synonym: "Spinal nucleus of trigeminal nerve" EXACT []
synonym: "spinal trigeminal nucleus" EXACT []
synonym: "Trigeminal nerve spinal tract nucleus" EXACT []
synonym: "trigeminal nerve spinal tract nucleus" EXACT []
synonym: "Trigeminal spinal nucleus" EXACT []
synonym: "trigeminal spinal nucleus" EXACT []
synonym: "trigeminal V spinal sensory nucleus" EXACT []
synonym: "trigeminal v spinal sensory nucleus" EXACT []
xref: FMA:54565
xref: GAID:605
xref: MA:0001053
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001718
name: mesencephalic nucleus of trigeminal nerve
alt_id: UBERON:FMA_54568-ZFA_0000312
def: "." [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Mesencephalic nucleus of trigeminal nerve" EXACT []
synonym: "Mesencephalic trigeminal nucleus" EXACT []
synonym: "mesencephalic trigeminal nucleus" EXACT []
synonym: "Nucleus of mesencephalic root of V" EXACT []
synonym: "nucleus of mesencephalic root of v" EXACT []
synonym: "Trigeminal nerve mesencepahlic nucleus" EXACT []
synonym: "trigeminal nerve mesencepahlic nucleus" EXACT []
xref: FMA:54568
xref: NIF_GrossAnatomy:birnlex_1010
xref: TAO:0000312
xref: ZFA:0000312
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001719
name: nucleus ambiguus
alt_id: UBERON:FMA_54588-MA_0001050
def: "." [Wikipedia:Nucleus_ambiguus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ambiguus nucleus" EXACT []
synonym: "ambiguus nucleus" EXACT []
synonym: "Nucleus ambiguus" EXACT []
xref: FMA:54588
xref: MA:0001050
xref: ncithesaurus:Nucleus_Ambiguus
xref: NIF_GrossAnatomy:birnlex_2650
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001720
name: cochlear nucleus
alt_id: UBERON:FMA_54603-ZFA_0001638
def: "." [Wikipedia:Cochlear_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cochlear nucleus" EXACT []
synonym: "Cochlear nucleus of acoustic nerve" EXACT []
synonym: "cochlear nucleus of acoustic nerve" EXACT []
synonym: "Cochlear nucleus of eighth cranial nerve" EXACT []
synonym: "cochlear nucleus of eighth cranial nerve" EXACT []
synonym: "Nucleus of cochlear nerve" EXACT []
synonym: "nucleus of cochlear nerve" EXACT []
synonym: "statoacoustic (VIII) nucleus" EXACT []
synonym: "statoacoustic (viii) nucleus" EXACT []
synonym: "vestibulocochlear nucleus" RELATED []
xref: FMA:54603
xref: GAID:601
xref: ncithesaurus:Cochlear_Nucleus
xref: ZFA:0001638
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0001721
name: inferior vestibular nucleus
alt_id: UBERON:FMA_54608-MA_0001054
def: "." [Wikipedia:Inferior_vestibular_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Descending vestibular nucleus" EXACT []
synonym: "descending vestibular nucleus" EXACT []
synonym: "Inferior vestibular nucleus" EXACT []
synonym: "Spinal vestibular nucleus" EXACT []
synonym: "spinal vestibular nucleus" EXACT []
xref: FMA:54608
xref: MA:0001054
xref: ncithesaurus:Spinal_Vestibular_Nucleus
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001722
name: medial vestibular nucleus
alt_id: UBERON:FMA_54611-MA_0001048
def: "." [Wikipedia:Medial_vestibular_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Chief vestibular nucleus" EXACT []
synonym: "chief vestibular nucleus" EXACT []
synonym: "Dorsal vestibular nucleus" EXACT []
synonym: "dorsal vestibular nucleus" EXACT []
synonym: "Medial vestibular nucleus" EXACT []
synonym: "Nucleus of Schwalbe" EXACT []
synonym: "nucleus of schwalbe" EXACT []
synonym: "Principal vestibular nucleus" EXACT []
synonym: "principal vestibular nucleus" EXACT []
synonym: "Schwalbe's nucleus" EXACT []
synonym: "schwalbe's nucleus" EXACT []
synonym: "Triangular nucleus" EXACT []
synonym: "triangular nucleus" EXACT []
xref: FMA:54611
xref: MA:0001048
xref: ncithesaurus:Medial_Vestibular_Nucleus
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001723
name: tongue
alt_id: UBERON:FMA_54640-MA_0000347-MIAA_0000040-XAO_0000446
def: "The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in man other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech[GO]." [GO:0043586, Wikipedia:Tongue]
subset: uberon_slim
synonym: "Tongue" EXACT []
xref: BTO:0001385
xref: EFO:0000833
xref: EHDAA:9144
xref: FMA:54640
xref: GAID:816
xref: HOG:0000419
xref: MA:0000347
xref: MAT:0000040
xref: MIAA:0000040
xref: ncithesaurus:Tongue
xref: OpenCyc:Mx4rvVjmJ5wpEbGdrcN5Y29ycA_53KXLq9EdqAAAACs6hnmQ
xref: XAO:0000446
is_a: UBERON:0000062 ! organ
is_a: UBERON:0003212 ! implied link automatically realized ! gustatory organ
relationship: develops_from UBERON:0002539 ! pharyngeal arch
relationship: part_of UBERON:0001033 ! gustatory system
[Term]
id: UBERON:0001724
name: sphenoidal sinus
alt_id: UBERON:FMA_54683-MA_0001795
def: "." [Wikipedia:Sphenoidal_sinus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sphenoid sinus" EXACT []
synonym: "Sphenoidal sinus" EXACT []
xref: FMA:54683
xref: GAID:359
xref: MA:0001795
xref: ncithesaurus:Sphenoid_Sinus
is_a: UBERON:0001825 ! paranasal sinus
[Term]
id: UBERON:0001725
name: cranial synchondrosis
alt_id: UBERON:FMA_54816-MA_0001502
comment: This class was created automatically from a combination of ontologies
synonym: "Cranial synchondrosis" EXACT []
xref: FMA:54816
xref: MA:0001502
is_a: UBERON:0002215 ! synchondrosis
intersection_of: UBERON:0002215 ! synchondrosis
intersection_of: part_of UBERON:0000032 ! cranial structure
[Term]
id: UBERON:0001726
name: papilla of tongue
alt_id: UBERON:FMA_54819-MA_0001593
comment: This class was created automatically from a combination of ontologies
synonym: "Lingual papilla" EXACT []
synonym: "lingual papilla" EXACT []
synonym: "Papilla of tongue" EXACT []
synonym: "Tongue papilla" EXACT []
synonym: "tongue papilla" EXACT []
xref: FMA:54819
xref: MA:0001593
xref: NIF_GrossAnatomy:birnlex_4102
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0001727
name: taste bud
alt_id: UBERON:FMA_54825-MA_0001591-XAO_0000445-ZFA_0001074
def: "." [Wikipedia:Taste_bud]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Taste bud" EXACT []
synonym: "taste buds" RELATED []
xref: BTO:0000989
xref: FMA:54825
xref: GAID:815
xref: HOG:0000130
xref: MA:0001591
xref: NIF_GrossAnatomy:birnlex_4101
xref: OpenCyc:Mx4rvVjan5wpEbGdrcN5Y29ycA
xref: TAO:0001074
xref: XAO:0000445
xref: ZFA:0001074
is_a: UBERON:0000064 ! organ part
relationship: develops_from UBERON:0001723 ! tongue
relationship: develops_from UBERON:0001731 ! cavity of pharynx
relationship: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0001728
name: nasopharynx
alt_id: UBERON:FMA_54878-MA_0000443
def: "." [Wikipedia:Nasopharynx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Nasal part of pharynx" EXACT []
synonym: "nasal part of pharynx" EXACT []
synonym: "Nasopharynx" EXACT []
synonym: "Rhinopharynx" EXACT []
synonym: "rhinopharynx" EXACT []
xref: BTO:0000662
xref: EHDAA:7086
xref: FMA:54878
xref: GAID:339
xref: HOG:0000375
xref: MA:0000443
xref: MAT:0000447
xref: ncithesaurus:Nasopharynx
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001042 ! pharynx
relationship: part_of UBERON:0001557 ! upper respiratory tract
[Term]
id: UBERON:0001729
name: oropharynx
alt_id: UBERON:FMA_54879-MA_0000351
def: "." [Wikipedia:Oropharynx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Oral part of pharynx" EXACT []
synonym: "oral part of pharynx" EXACT []
synonym: "Oropharynx" EXACT []
xref: EFO:0001976
xref: FMA:54879
xref: GAID:340
xref: HOG:0000457
xref: MA:0000351
xref: MAT:0000446
xref: ncithesaurus:Oropharynx
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0001730
name: extrinsic ligament of larynx
alt_id: UBERON:FMA_54921-MA_0001756
comment: This class was created automatically from a combination of ontologies
synonym: "Extrinsic ligament of larynx" EXACT []
synonym: "laryngeal extrinsic ligament" EXACT []
xref: FMA:54921
xref: MA:0001756
is_a: UBERON:0001743 ! ligament of larynx
[Term]
id: UBERON:0001731
name: cavity of pharynx
alt_id: UBERON:FMA_54935-XAO_0000105
comment: This class was created automatically from a combination of ontologies
synonym: "Cavity of pharynx" EXACT []
synonym: "Lumen of pharynx" EXACT []
synonym: "lumen of pharynx" EXACT []
synonym: "Pharyngeal cavity" EXACT []
synonym: "pharyngeal cavity" EXACT []
xref: BTO:0002097
xref: FMA:54935
xref: XAO:0000105
is_a: UBERON:0002553 ! anatomical cavity
relationship: develops_from UBERON:0001041 ! foregut
relationship: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0001732
name: pharyngeal tonsil
alt_id: UBERON:FMA_54970-MA_0000774
def: "." [Wikipedia:Pharyngeal_tonsil]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Adenoid" EXACT []
synonym: "adenoid" EXACT []
synonym: "Nasopharyngeal tonsil" EXACT []
synonym: "nasopharyngeal tonsil" EXACT []
synonym: "Pharyngeal tonsil" EXACT []
synonym: "Tonsil of Luschka" EXACT []
synonym: "tonsil of luschka" EXACT []
xref: BTO:0000777
xref: EFO:0001401
xref: FMA:54970
xref: GAID:1288
xref: MA:0000774
xref: ncithesaurus:Pharyngeal_Tonsil
is_a: UBERON:0002372 ! tonsil
intersection_of: UBERON:0002372 ! tonsil
intersection_of: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0001733
name: soft palate
alt_id: UBERON:FMA_55021-MA_0002412-MIAA_0000039
def: "soft tissue constituting the back of the roof of the mouth. The soft palate is distinguished from the hard palate at the front of the mouth in that it does not contain bone[WP]. The soft palate is the posterior portion of the palate extending from the posterior edge of the hard palate[GO]." [GO:0060023, Wikipedia:Soft_palate]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "muscular palate" RELATED [Wikipedia:Soft_palate]
synonym: "velum" RELATED [Wikipedia:Soft_palate]
xref: FMA:55021
xref: GAID:1284
xref: MA:0002412
xref: MAT:0000039
xref: MIAA:0000039
xref: ncithesaurus:Soft_Palate
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0001716 ! palate
[Term]
id: UBERON:0001734
name: uvula
alt_id: UBERON:FMA_55022-MA_0001006
def: "Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers. The uvula, hanging from the end of the soft palate, is responsible for the sound of snoring. Touching the uvula or the end of the soft palate evokes a strong gag reflex in most people." [Wikipedia:Uvula]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cerebellum lobule IX" EXACT []
synonym: "cerebellum lobule ix" EXACT []
synonym: "Uvula" EXACT []
synonym: "Uvula of palate" EXACT []
synonym: "uvula of palate" EXACT []
xref: EFO:0001386
xref: FMA:55022
xref: GAID:1285
xref: MA:0001006
xref: ncithesaurus:Uvula
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0001735
name: tonsillar ring
alt_id: UBERON:FMA_55070-MA_0000752
def: "lymphoid tissue ring located in the pharynx and to the back of the oral cavity." [Wikipedia:Waldeyer's_ring]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "oropharyngeal lymphoid tissue" EXACT []
synonym: "Pharyngeal lymphatic ring" EXACT []
synonym: "pharyngeal lymphatic ring" EXACT []
synonym: "Pharyngeal lymphoid ring" EXACT []
synonym: "pharyngeal lymphoid ring" EXACT []
synonym: "Tonsillar ring" EXACT []
synonym: "Waldeyer's ring" EXACT []
synonym: "waldeyer's ring" RELATED []
synonym: "Waldeyer's tonsillar ring" EXACT []
synonym: "waldeyer's tonsillar ring" EXACT []
xref: FMA:55070
xref: MA:0000752
xref: ncithesaurus:Waldeyers_Tonsillar_Ring
is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue
relationship: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0001736
name: submandibular gland
alt_id: UBERON:FMA_55093-MA_0001589
def: "." [Wikipedia:Submandibular_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Submandibular gland" EXACT []
synonym: "Submaxillary gland" EXACT []
synonym: "submaxillary gland" RELATED []
xref: BTO:0001316
xref: EFO:0001387
xref: FMA:55093
xref: GAID:942
xref: HOG:0000364
xref: MA:0001589
xref: ncithesaurus:Submandibular_Gland
is_a: UBERON:0001829 ! major salivary gland
[Term]
id: UBERON:0001737
name: larynx
alt_id: UBERON:FMA_55097-MA_0000414-MIAA_0000187-XAO_0003081
def: "Heterogeneous cluster that connects the pharynx to the tracheobronchial tree. Examples: There is only one larynx." [Wikipedia:Larynx]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Larynx" EXACT []
xref: AAO:0000268
xref: BTO:0001208
xref: EFO:0000838
xref: FMA:55097
xref: GAID:108
xref: galen:Larynx
xref: HOG:0001279
xref: MA:0000414
xref: MAT:0000187
xref: MIAA:0000187
xref: ncithesaurus:Larynx
xref: OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA
xref: XAO:0003081
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001557 ! upper respiratory tract
[Term]
id: UBERON:0001738
name: thyroid cartilage
alt_id: UBERON:FMA_55099-MA_0001764
def: "." [Wikipedia:Thyroid_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Thyroid cartilage" EXACT []
xref: BTO:0003655
xref: FMA:55099
xref: GAID:112
xref: HOG:0001365
xref: MA:0001764
xref: ncithesaurus:Thyroid_Cartilage
is_a: UBERON:0001739 ! laryngeal cartilage
[Term]
id: UBERON:0001739
name: laryngeal cartilage
alt_id: UBERON:FMA_55108-MA_0001758
comment: This class was created automatically from a combination of ontologies
synonym: "Cartilage of larynx" EXACT []
synonym: "cartilage of larynx" EXACT []
synonym: "Laryngeal cartilage" EXACT []
synonym: "larynx cartilage" EXACT []
xref: BTO:0003660
xref: EHDAA:8157
xref: FMA:55108
xref: GAID:107
xref: MA:0001758
xref: ncithesaurus:Laryngeal_Cartilage
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002236 ! costal cartilage
is_a: UBERON:0003406 ! implied link automatically realized ! cartilage of respiratory system
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0001740
name: arytenoid cartilage
alt_id: UBERON:FMA_55109-MA_0001759
def: "." [Wikipedia:Arytenoid_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Arytenoid cartilage" EXACT []
xref: AAO:0000674
xref: FMA:55109
xref: GAID:109
xref: MA:0001759
xref: ncithesaurus:Arytenoid_Cartilage
is_a: UBERON:0001739 ! laryngeal cartilage
[Term]
id: UBERON:0001741
name: corniculate cartilage
alt_id: UBERON:FMA_55110-MA_0001885
def: "." [Wikipedia:Corniculate_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cartilage of Santorini" EXACT []
synonym: "cartilage of santorini" EXACT []
synonym: "Corniculate cartilage" EXACT []
synonym: "Santorini's cartilage" EXACT []
synonym: "santorini's cartilage" EXACT []
xref: FMA:55110
xref: MA:0001885
xref: ncithesaurus:Corniculate_Cartilage
is_a: UBERON:0001739 ! laryngeal cartilage
is_a: UBERON:0001996 ! elastic cartilage
[Term]
id: UBERON:0001742
name: epiglottic cartilage
alt_id: UBERON:FMA_55112-MA_0001763
def: "." [Wikipedia:Epiglottic_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Epiglottic cartilage" EXACT []
xref: FMA:55112
xref: MA:0001763
xref: ncithesaurus:Epiglottic_Cartilage
is_a: UBERON:0001739 ! laryngeal cartilage
is_a: UBERON:0001996 ! elastic cartilage
[Term]
id: UBERON:0001743
name: ligament of larynx
alt_id: UBERON:FMA_55131-MA_0001755
comment: This class was created automatically from a combination of ontologies
synonym: "Laryngeal ligament" EXACT []
synonym: "laryngeal ligament" EXACT []
synonym: "larynx ligament" EXACT []
synonym: "Ligament of larynx" EXACT []
xref: FMA:55131
xref: MA:0001755
xref: ncithesaurus:Laryngeal_Ligament
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000211 ! ligament
is_a: UBERON:0003583 ! implied link automatically realized ! larynx connective tissue
intersection_of: UBERON:0000211 ! ligament
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0001744
name: lymphoid tissue
alt_id: UBERON:FMA_55220-MA_0002436
def: "Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]." [Wikipedia:Lymphoid_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lymphatic tissue" EXACT []
synonym: "lymphocytic tissue" EXACT []
xref: BTO:0000753
xref: FMA:55220
xref: GAID:342
xref: MA:0002436
xref: ncithesaurus:Lymphoid_Tissue
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0002193 ! hemolymphoid system
[Term]
id: UBERON:0001745
name: secondary nodular lymphoid tissue
alt_id: UBERON:FMA_55224-MA_0000744
def: "sites within lymph nodes in peripheral lymph tissues where intense mature B lymphocytes, otherwise known as Centrocytes rapidly proliferate, differentiate, mutate through somatic hypermutation and class switch during antibody responses. Germinal centers are an important part of the B-cell humoral immune response. They develop dynamically after the activation of B-cells by T-dependent antigen. Histologically, the GCs describe microscopically distinguishable parts in lymphoid tissues[WP]. A germinal center is a specialized microenvironment formed when activated B cells enter lymphoid follicles. Germinal centers are the foci for B cell proliferation and somatic hypermutation[GO]." [GO:0002467, Wikipedia:Germinal_center]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "germinal center" EXACT []
synonym: "lymph node germinal center" RELATED []
synonym: "lymph node secondary follicle" EXACT []
synonym: "Peripheral lymphoid tissue" EXACT []
synonym: "peripheral lymphoid tissue" EXACT []
synonym: "Secondary lymphoid nodule" EXACT []
synonym: "secondary lymphoid nodule" EXACT []
synonym: "Secondary lymphoid tissue" EXACT []
synonym: "secondary lymphoid tissue" EXACT []
synonym: "Secondary nodular lymphoid tissue" EXACT []
xref: BTO:0003671
xref: FMA:55224
xref: GAID:946
xref: MA:0000744
xref: ncithesaurus:Germinal_Center
is_a: UBERON:0001744 ! lymphoid tissue
relationship: part_of UBERON:0000029 ! lymph node
[Term]
id: UBERON:0001746
name: fibrous capsule of thyroid gland
alt_id: UBERON:FMA_55513-MA_0002675
comment: This class was created automatically from a combination of ontologies
synonym: "Fibrous capsule of thyroid gland" EXACT []
synonym: "Thyroid capsule" EXACT []
synonym: "thyroid capsule" EXACT []
synonym: "thyroid gland capsule" EXACT []
xref: FMA:55513
xref: MA:0002675
xref: ncithesaurus:Thyroid_Gland_Capsule
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002046 ! thyroid follicle
[Term]
id: UBERON:0001747
name: parenchyma of thyroid gland
alt_id: UBERON:FMA_55515-MA_0000730
comment: This class was created automatically from a combination of ontologies
synonym: "Parenchyma of thyroid gland" EXACT []
synonym: "Thyroid gland parenchyma" EXACT []
synonym: "thyroid gland parenchyma" EXACT []
xref: FMA:55515
xref: MA:0000730
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0002046 ! thyroid follicle
relationship: part_of UBERON:0002046 ! thyroid follicle
[Term]
id: UBERON:0001748
name: capsule of parathyroid gland
alt_id: UBERON:FMA_55566-MA_0002676
comment: This class was created automatically from a combination of ontologies
synonym: "Capsule of parathyroid gland" EXACT []
synonym: "Parathyroid gland capsule" EXACT []
synonym: "parathyroid gland capsule" EXACT []
xref: FMA:55566
xref: MA:0002676
xref: ncithesaurus:Parathyroid_Gland_Capsule
is_a: UBERON:0003893 ! capsule
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0001132 ! parathyroid gland
relationship: surrounds UBERON:0001132 ! parathyroid gland
[Term]
id: UBERON:0001749
name: parenchyma of parathyroid gland
alt_id: UBERON:FMA_55569-MA_0002677
comment: This class was created automatically from a combination of ontologies
synonym: "Parathyroid gland parenchyma" EXACT []
synonym: "parathyroid gland parenchyma" EXACT []
synonym: "Parenchyma of parathyroid gland" EXACT []
xref: FMA:55569
xref: MA:0002677
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma
intersection_of: UBERON:0000353 ! parenchyma
intersection_of: part_of UBERON:0001132 ! parathyroid gland
relationship: part_of UBERON:0001132 ! parathyroid gland
[Term]
id: UBERON:0001750
name: lacrimal apparatus
alt_id: UBERON:FMA_55605-MA_0000274
def: "." [Wikipedia:Lacrimal_apparatus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lacrimal apparatus" EXACT []
xref: FMA:55605
xref: GAID:901
xref: MA:0000274
xref: ncithesaurus:Lacrimal_Apparatus
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0001751
name: dentine
alt_id: UBERON:FMA_55628-MA_0002542-ZFA_0005143
def: "Substance of tooth produced by odontoblasts; surrounds the pulp of the tooth and is subjacent to enamel and cement[FMA]. Mineralized collagen containing substance that forms the tooth structure[ZFA]. a calcified tissue of the body, and along with enamel, cementum, and pulp is one of the four major components of teeth[WP]." [Wikipedia:Dentin, ZFIN:curator]
comment: Dentine is found in the fossil record as early as the late Cambrian, in fish, where it may have had a role in electrochemical sensing of the environment as well as assisting in defense[WP].
subset: uberon_slim
synonym: "dentin" EXACT []
synonym: "dentine of tooth" EXACT []
synonym: "predentin" NARROW [GO:0070468]
xref: BTO:0003453
xref: FMA:55628
xref: GAID:1272
xref: MA:0002542
xref: ncithesaurus:Dentin
xref: TAO:0005143
xref: ZFA:0005143
is_a: UBERON:0001973 ! substance of tooth
relationship: develops_from UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0001752
name: enamel
alt_id: UBERON:FMA_55629-MA_0002543-ZFA_0005142
def: "A dentine-like hypermineralized substance that covers the tooth tip. Enamel's primary mineral is hydroxylapatite, which is a crystalline calcium phosphate. Unlike dentin and bone, enamel does not contain collagen. Instead, it has two unique classes of proteins called amelogenins and enamelins[WP]." [Wikipedia:Enamel, ZFIN:curator]
comment: Tooth enamel is also found in the dermal denticles of sharks UBERON:0000041. For the most part, research has shown that formation in animals is almost identical to formation in humans. The enamel organ, including the dental papilla, and ameloblasts function similarly.[53] The variations of enamel that are present are infrequent but sometimes important. Differences exist, certainly, in the morphology, number, and types of teeth among animals.
subset: uberon_slim
synonym: "Enamel" EXACT []
synonym: "Enamel of tooth" EXACT []
synonym: "enamel of tooth" EXACT []
synonym: "enameloid" EXACT []
synonym: "tooth enamel" EXACT []
xref: BTO:0001844
xref: FMA:55629
xref: MA:0002543
xref: ncithesaurus:Enamel
xref: TAO:0005142
xref: ZFA:0005142
is_a: UBERON:0001973 ! substance of tooth
[Term]
id: UBERON:0001753
name: cementum
alt_id: UBERON:FMA_55630-MA_0002541
def: "Substance of tooth produced by cementoblasts; surrounds the dentine of the root of the tooth[FMA]. a specialized calcified substance covering the root of a tooth. Cementum is excreted by cells called cementoblasts within the root of the tooth and is thickest at the root apex. Its coloration is yellowish and it is softer than enamel and dentin due to being less mineralized[WP]." [Wikipedia:Cementum]
comment: This class was created automatically from a combination of ontologies
synonym: "Cement" EXACT []
synonym: "Cement of tooth" EXACT []
synonym: "cement of tooth" EXACT []
synonym: "cementum" EXACT []
synonym: "Cementum of tooth" EXACT []
synonym: "cementum of tooth" EXACT []
xref: FMA:55630
xref: MA:0002541
xref: ncithesaurus:Cementum
is_a: UBERON:0001973 ! substance of tooth
[Term]
id: UBERON:0001754
name: dental pulp
alt_id: UBERON:FMA_55631-MA_0001599
def: "the part in the center of a tooth made up of living soft tissue and cells called odontoblasts[WP]." [Wikipedia:Dental_pulp]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Dental pulp" EXACT []
synonym: "Pulp of tooth" EXACT []
synonym: "pulp of tooth" EXACT []
xref: BTO:0000339
xref: FMA:55631
xref: GAID:1270
xref: HOG:0001469
xref: MA:0001599
xref: ncithesaurus:Dental_Pulp
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0001755
name: stylohyal
alt_id: UBERON:FMA_56472-ZFA_0001511
def: "The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "Distal part of styloid process" EXACT []
synonym: "distal part of styloid process" EXACT []
synonym: "interhyal bone" RELATED []
synonym: "interhyal cartilage" EXACT []
synonym: "Stylohyal" EXACT []
xref: FMA:56472
xref: TAO:0001511
xref: ZFA:0001511
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0001756
name: middle ear
alt_id: UBERON:FMA_56513-MA_0000253-MIAA_0000146-XAO_0000191
def: "The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window)[GO]." [GO:0042474, Wikipedia:Middle_ear]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Middle ear" EXACT []
synonym: "tympanic cavity" RELATED []
xref: BTO:0002099
xref: EHDAA:5693
xref: FMA:56513
xref: GAID:165
xref: HOG:0000312
xref: MA:0000253
xref: MAT:0000146
xref: MIAA:0000146
xref: ncithesaurus:Middle_Ear
xref: NIF_GrossAnatomy:birnlex_1695
xref: OpenCyc:Mx4rvbw1j5wpEbGdrcN5Y29ycA
xref: XAO:0000191
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001690 ! ear
[Term]
id: UBERON:0001757
name: pinna
alt_id: UBERON:FMA_56580-MA_0000259
def: "Visible part of the ear that resides outside of the head. The purpose of the pinna is to collect sound. It does so by acting as a funnel, amplifying the sound and directing it to the ear canal. While reflecting from the pinna, sound also goes through a filtering process which adds directional information to the sound (see sound localization, head-related transfer function, pinna notch). The filtering effect of the human pinna preferentially selects sounds in the frequency range of human speech. In various species, the pinna can also signal mood and radiate heat." [Wikipedia:Pinna_(anatomy)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Auricle" EXACT []
synonym: "auricle" EXACT []
synonym: "Auricle of ear" EXACT []
synonym: "auricle of ear" EXACT []
synonym: "Auricle of external ear" EXACT []
synonym: "auricle of external ear" EXACT []
synonym: "auricula" EXACT [Wikipedia:Auricula]
synonym: "Auricula (Auris externa)" EXACT []
synonym: "auricula (auris externa)" EXACT []
synonym: "Pinna" EXACT []
synonym: "Pinna of ear" EXACT []
synonym: "pinna of ear" EXACT []
xref: FMA:56580
xref: galen:Auricle
xref: HOG:0000460
xref: MA:0000259
xref: ncithesaurus:Auricle
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001691 ! external ear
[Term]
id: UBERON:0001758
name: periodontium
alt_id: UBERON:FMA_56665-MA_0002467
def: "Skeletal ligament (organ) that connects a tooth to the maxilla or mandible." [Wikipedia:Periodontium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Periodontal ligament" EXACT []
synonym: "periodontal ligament" EXACT []
synonym: "Periodontal membrane" EXACT []
synonym: "periodontal membrane" RELATED []
synonym: "Periodontium" EXACT []
xref: BTO:0001020
xref: BTO:0001021
xref: FMA:56665
xref: GAID:1259
xref: GAID:216
xref: MA:0002467
xref: ncithesaurus:Periodontium
is_a: UBERON:0000211 ! ligament
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0001759
name: vagus nerve
alt_id: UBERON:FMA_5731-MA_0001106-XAO_0003097-ZFA_0000453
def: "Cranial nerve that branches into the lateral (to body sense organs) and the intestino-accessorial (to the skin, muscles of shoulder, hyoid, larynx, gut, lungs, and heart)." [ISBN:0471209627, Wikipedia:Vagus_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CN-X" RELATED []
synonym: "cranial nerve X" RELATED []
synonym: "Tenth cranial nerve" EXACT []
synonym: "tenth cranial nerve" EXACT []
synonym: "vagal nerve" RELATED []
synonym: "Vagus" EXACT []
synonym: "vagus" EXACT []
synonym: "Vagus nerve" EXACT []
synonym: "Vagus nerve [X]" EXACT []
synonym: "vagus nerve [x]" EXACT []
synonym: "Vagus nerve tree" EXACT []
synonym: "vagus nerve tree" EXACT []
synonym: "vagus X nerve" EXACT []
synonym: "vagus x nerve" EXACT []
xref: BTO:0003472
xref: EFO:0002549
xref: FMA:5731
xref: GAID:721
xref: HOG:0000737
xref: MA:0001106
xref: ncithesaurus:Vagus_Nerve
xref: NIF_GrossAnatomy:birnlex_801
xref: TAO:0000453
xref: XAO:0003097
xref: ZFA:0000453
is_a: UBERON:0001785 ! cranial nerve
relationship: part_of UBERON:0001033 ! gustatory system
[Term]
id: UBERON:0001760
name: frontal sinus
alt_id: UBERON:FMA_57417-MA_0001793
def: "." [Wikipedia:Frontal_sinus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Frontal sinus" EXACT []
xref: FMA:57417
xref: GAID:357
xref: MA:0001793
xref: ncithesaurus:Frontal_Sinus
is_a: UBERON:0001825 ! paranasal sinus
[Term]
id: UBERON:0001761
name: foramen caecum
alt_id: UBERON:FMA_57443-MA_0000725
def: "." [Wikipedia:Foramen_caecum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Foramen caecum" EXACT []
xref: EHDAA:2150
xref: EHDAA:2977
xref: FMA:57443
xref: HOG:0000826
xref: MA:0000725
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0001762
name: nasal concha
alt_id: UBERON:FMA_57456-MA_0000286
def: "." [Wikipedia:Nasal_concha]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Nasal concha" EXACT []
synonym: "Nasal concha of ethmoid bone" EXACT []
synonym: "nasal concha of ethmoid bone" EXACT []
synonym: "Nasal turbinate" EXACT []
synonym: "nasal turbinate" EXACT []
synonym: "Turbinate" EXACT []
synonym: "turbinate" EXACT []
xref: FMA:57456
xref: GAID:224
xref: MA:0000286
xref: ncithesaurus:Nasal_Turbinate
xref: OpenCyc:Mx4rv07bVJwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0001763
name: dental papilla
alt_id: UBERON:FMA_57662-MA_0001598-ZFA_0005140
def: "Tissue of the developing tooth. It is composed of pre-odontoblast and undiffentiated mesnchyme cells and connects to the basal lamina." [Wikipedia:Dental_papilla, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Dental papilla" EXACT []
synonym: "pharyngeal tooth mesenchyme" RELATED []
synonym: "tooth mesenchyme" RELATED []
xref: BTO:0001839
xref: FMA:57662
xref: GAID:1277
xref: MA:0001598
xref: TAO:0005140
xref: ZFA:0005140
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000479 ! portion of tissue
relationship: develops_from UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0001828 ! gingiva
[Term]
id: UBERON:0001764
name: maxillary sinus
alt_id: UBERON:FMA_57715-MA_0001794
def: "." [Wikipedia:Maxillary_sinus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Antrum of Highmore" EXACT []
synonym: "antrum of highmore" EXACT []
synonym: "Maxillary sinus" EXACT []
xref: FMA:57715
xref: GAID:358
xref: MA:0001794
xref: ncithesaurus:Maxillary_Sinus
is_a: UBERON:0001825 ! paranasal sinus
[Term]
id: UBERON:0001765
name: lactiferous duct
alt_id: UBERON:FMA_58006-MA_0000791
def: "Ppithelial tube that transports milk[GO]." [GO:0060603, Wikipedia:Lactiferous_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "mammary duct" EXACT [GO:0060603]
synonym: "mammary gland duct" EXACT []
xref: BTO:0002845
xref: FMA:58006
xref: MA:0000791
xref: ncithesaurus:Lactiferous_Duct
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0001911 ! lactiferous gland
[Term]
id: UBERON:0001766
name: anterior chamber of eyeball
alt_id: UBERON:FMA_58078-MA_0000262
comment: This class was created automatically from a combination of ontologies
synonym: "Anterior chamber of eye" EXACT []
synonym: "anterior chamber of eye" EXACT []
synonym: "Anterior chamber of eyeball" EXACT []
synonym: "Camera anterior" EXACT []
synonym: "camera anterior" EXACT []
synonym: "eye anterior chamber" EXACT []
xref: FMA:58078
xref: HOG:0001431
xref: MA:0000262
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
[Term]
id: UBERON:0001767
name: posterior chamber of eyeball
alt_id: UBERON:FMA_58080-MA_0002460
comment: This class was created automatically from a combination of ontologies
synonym: "Camera posterior" EXACT []
synonym: "camera posterior" EXACT []
synonym: "eye posterior chamber" EXACT []
synonym: "Posterior chamber of eye" EXACT []
synonym: "posterior chamber of eye" EXACT []
synonym: "Posterior chamber of eyeball" EXACT []
xref: FMA:58080
xref: MA:0002460
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
[Term]
id: UBERON:0001768
name: vascular layer of eyeball
alt_id: UBERON:FMA_58103-MA_0002480
def: "." [Wikipedia:Uvea]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Tunica vasculosa of eyeball" EXACT []
synonym: "tunica vasculosa of eyeball" EXACT []
synonym: "Uvea" EXACT []
synonym: "uvea" EXACT []
synonym: "Uveal tract" EXACT []
synonym: "uveal tract" EXACT []
synonym: "Vascular layer of eyeball" EXACT []
xref: FMA:58103
xref: GAID:912
xref: MA:0002480
xref: ncithesaurus:Uvea
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001801 ! anterior segment of eyeball
[Term]
id: UBERON:0001769
name: iris
alt_id: UBERON:FMA_58235-MA_0000273-XAO_0000185-ZFA_0001238
def: "a membrane in the eye, responsible for controlling the amount of light reaching the retina. The iris consists of pigmented fibrovascular tissue known as a stroma. It is the most forward portion of the eye and the only one seen on superficial inspection. The stroma connects a sphincter muscle (sphincter pupillae), which contracts the pupil, and a set of dilator muscles (dilator pupillae) which open it. The back surface is covered by a heavily pigmented epithelial layer two cells thick (the iris pigment epithelium), but the front surface has no epithelium. The high pigment content blocks light from passing through the iris and restricts it to the pupil. The outer edge of the iris, known as the root, is attached to the sclera and the anterior ciliary body. The iris and ciliary body together are known as the anterior uvea. Just in front of the root of the iris is the region through which the aqueous humour constantly drains out of the eye, with the result that diseases of the iris often have important effects on intraocular pressure, and indirectly on vision. Depending on the amount of light, the iris makes the pupil larger or smaller." [Wikipedia:Iris_(anatomy)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Iris" EXACT []
xref: BTO:0000653
xref: FMA:58235
xref: GAID:917
xref: HOG:0000101
xref: MA:0000273
xref: ncithesaurus:Iris
xref: OpenCyc:Mx4rvVjbppwpEbGdrcN5Y29ycA
xref: TAO:0001238
xref: XAO:0000185
xref: ZFA:0001238
is_a: UBERON:0001768 ! vascular layer of eyeball
relationship: develops_from UBERON:0003072 ! eye vesicle
[Term]
id: UBERON:0001770
name: lacrimal canaliculus
alt_id: UBERON:FMA_58245-MA_0001294
def: "." [Wikipedia:Lacrimal_canaliculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lacrimal canaliculus" EXACT []
xref: FMA:58245
xref: MA:0001294
xref: ncithesaurus:Lacrimal_Canaliculus
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001850 ! lacrimal duct
[Term]
id: UBERON:0001771
name: pupil
alt_id: UBERON:FMA_58252-MA_0001292-XAO_0000283-ZFA_0001283
def: "sphere that is located in the center of the iris of the eye and that controls the amount of light that enters the eye." [Wikipedia:Pupil]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pupil" EXACT []
xref: FMA:58252
xref: GAID:918
xref: HOG:0000116
xref: MA:0001292
xref: ncithesaurus:Pupil
xref: OpenCyc:Mx4rvViBr5wpEbGdrcN5Y29ycA
xref: TAO:0001283
xref: XAO:0000283
xref: ZFA:0001283
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0001772
name: corneal epithelium
alt_id: UBERON:FMA_58263-MA_0001243
def: "." [Wikipedia:Corneal_epithelium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anterior corneal epithelium" EXACT []
synonym: "anterior corneal epithelium" EXACT []
synonym: "Corneal epithelium" EXACT []
synonym: "Epithelium anterius (Cornea)" EXACT []
synonym: "epithelium anterius (cornea)" EXACT []
synonym: "Epithelium of cornea" EXACT []
synonym: "epithelium of cornea" EXACT []
synonym: "External epithelium of cornea" EXACT []
synonym: "external epithelium of cornea" EXACT []
xref: BTO:0000287
xref: EFO:0001917
xref: FMA:58263
xref: GAID:895
xref: MA:0001243
xref: ncithesaurus:Corneal_Epithelium
xref: ZFA:0001683
is_a: UBERON:0000488 ! atypical epithelium
is_a: UBERON:0001803 ! implied link automatically realized ! epithelium of lens
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000964 ! cornea
relationship: part_of UBERON:0000964 ! cornea
[Term]
id: UBERON:0001773
name: sclera
alt_id: UBERON:FMA_58269-MA_0000280-XAO_0000183
def: "." [Wikipedia:Sclera]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sclera" EXACT []
xref: BTO:0001606
xref: FMA:58269
xref: GAID:911
xref: HOG:0001274
xref: MA:0000280
xref: ncithesaurus:Sclera
xref: OpenCyc:Mx4rv7yR55wpEbGdrcN5Y29ycA
xref: XAO:0000183
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0001774
name: muscle of trunk
alt_id: UBERON:FMA_58274-MA_0000514
def: "Muscle organ which is a part of the trunk. Examples: external intercostal muscle, external oblique, levator ani." []
comment: TODO - check muscle organ vs musculature
subset: uberon_slim
synonym: "Muscle of trunk" EXACT []
synonym: "Trunk muscle" EXACT []
synonym: "trunk muscle" EXACT []
synonym: "trunk musculature" EXACT []
xref: AAO:0000611
xref: FMA:58274
xref: MA:0000514
xref: XAO:0003230
xref: ZFA:0000473
is_a: UBERON:0001630 ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0001775
name: ciliary body
alt_id: UBERON:FMA_58295-MA_0000264-XAO_0000186-ZFA_0001203
def: "." [Wikipedia:Ciliary_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ciliary body" EXACT []
xref: BTO:0000260
xref: FMA:58295
xref: GAID:916
xref: HOG:0000102
xref: MA:0000264
xref: ncithesaurus:Ciliary_Body
xref: TAO:0001203
xref: XAO:0000186
xref: ZFA:0001203
is_a: UBERON:0001768 ! vascular layer of eyeball
relationship: part_of UBERON:0001768 ! vascular layer of eyeball
[Term]
id: UBERON:0001776
name: choroid
alt_id: UBERON:FMA_58298-MA_0000263
def: "." [Wikipedia:Choroid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Choroid" EXACT []
xref: BTO:0001829
xref: FMA:58298
xref: GAID:913
xref: MA:0000263
xref: ncithesaurus:Choroid
xref: ZFA:0005229
is_a: UBERON:0001768 ! vascular layer of eyeball
relationship: part_of UBERON:0001768 ! vascular layer of eyeball
[Term]
id: UBERON:0001777
name: substantia propria of cornea
alt_id: UBERON:FMA_58306-MA_0001245
def: "." [Wikipedia:Corneal_stroma]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "corneal stroma" EXACT []
synonym: "Stroma of cornea" EXACT []
synonym: "stroma of cornea" EXACT []
synonym: "substantia propria" RELATED []
synonym: "Substantia propria of cornea" EXACT []
xref: EFO:0002514
xref: FMA:58306
xref: GAID:893
xref: MA:0001245
xref: ncithesaurus:Corneal_Stroma
xref: ZFA:0001685
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000964 ! cornea
[Term]
id: UBERON:0001778
name: epithelium of ciliary body
alt_id: UBERON:FMA_58464-MA_0001238
comment: This class was created automatically from a combination of ontologies
synonym: "Ciliary body epithelium" EXACT []
synonym: "ciliary body epithelium" EXACT []
synonym: "Ciliary epithelium" EXACT []
synonym: "ciliary epithelium" EXACT []
synonym: "Epithelium of ciliary body" EXACT []
xref: BTO:0001770
xref: FMA:58464
xref: MA:0001238
xref: ncithesaurus:Ciliary_Epithelium
is_a: UBERON:0000488 ! atypical epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001775 ! ciliary body
relationship: part_of UBERON:0001775 ! ciliary body
[Term]
id: UBERON:0001779
name: iris stroma
alt_id: UBERON:FMA_58526-MA_0002777
def: "the delicate vascular connective tissue that lies between the anterior surface of the iris and the pars iridica retinae." [http://www.drugs.com/dict/stroma-of-iris.html, Wikipedia:Iris_stroma]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "iridial stroma" EXACT []
synonym: "stroma of iris" EXACT []
xref: FMA:58526
xref: MA:0002777
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0001780
name: spinal nerve
alt_id: UBERON:FMA_5858-MA_0000233-XAO_0003101
def: "Neural tree (organ) which is directly continuous with the spinal cord. Examples: Fifth cervical spinal nerve, third lumbar spinal nerve." [Wikipedia:Spinal_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Spinal nerve" EXACT []
synonym: "Spinal nerve tree" EXACT []
synonym: "spinal nerve tree" EXACT []
xref: BTO:0000870
xref: FMA:5858
xref: GAID:841
xref: HOG:0000824
xref: MA:0000233
xref: ncithesaurus:Spinal_Nerve
xref: XAO:0003101
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0003439 ! implied link automatically realized ! trunk nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0001781
name: layer of retina
alt_id: UBERON:FMA_58617-MA_0001319-XAO_0000266
comment: GO: the outer nuclear layer (ONL), which contains photoreceptor nuclei; the inner nuclear layer (INL), which contains amacrine, bipolar and horizontal cells; and the retinal ganglion cell (RGC) layer. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells. The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells. Spanning all layers of the retina are the radially oriented Mueller glia.
synonym: "Layer of retina" EXACT []
synonym: "Retina layer" EXACT []
synonym: "retina layer" EXACT []
synonym: "retinal layer" EXACT []
xref: FMA:58617
xref: MA:0001319
xref: ncithesaurus:Retina_Layer
xref: XAO:0000266
is_a: UBERON:0000119 ! cell layer
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0001782
name: pigmented layer of retina
alt_id: UBERON:FMA_58627-MA_0000279-ZFA_0000144
def: "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup. Kimmel et al, 1995." [Wikipedia:Retinal_pigment_epithelium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Outer pigmented layer of retina" EXACT []
synonym: "outer pigmented layer of retina" EXACT []
synonym: "Pigment epithelium of retina" EXACT []
synonym: "pigment epithelium of retina" EXACT []
synonym: "pigmented epithelium" RELATED []
synonym: "Pigmented layer of retina" EXACT []
synonym: "pigmented retinal epithelium" EXACT []
synonym: "PRE" RELATED []
synonym: "Retinal pigment epithelium" EXACT []
synonym: "retinal pigment epithelium" EXACT []
synonym: "retinal pigmented epithelium" EXACT []
synonym: "RPE" RELATED []
synonym: "Stratum pigmentosum (Retina)" EXACT []
synonym: "stratum pigmentosum (retina)" EXACT []
xref: BTO:0001177
xref: EHDAA:4765
xref: FMA:58627
xref: HOG:0000536
xref: MA:0000279
xref: ncithesaurus:Retinal_Pigment_Epithelium
xref: TAO:0000144
xref: ZFA:0000144
is_a: UBERON:0001781 ! layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001783
name: optic disc
alt_id: UBERON:FMA_58634-MA_0000278
def: "." [Wikipedia:Optic_disc]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Optic disc" EXACT []
xref: EFO:0001974
xref: EHDAA:9077
xref: FMA:58634
xref: HOG:0000551
xref: MA:0000278
xref: ncithesaurus:Optic_Disc
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0001784
name: macula lutea
alt_id: UBERON:FMA_58637-MA_0001306-ZFA_0000386
comment: Obsoleted as it accidentally grouped macula and macula lutea
is_obsolete: true
consider: UBERON:0000053
consider: UBERON:0000054
[Term]
id: UBERON:0001785
name: cranial nerve
alt_id: UBERON:FMA_5865-MA_0000215-XAO_0003089-ZFA_0000641
def: "Neural tree organ which is continuous with the brain. Examples: Trochlear nerve, facial nerve[FMA]. // Any of the major paired nerves of the head region. // Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves." [Wikipedia:Cranial_nerve, XB:curator, ZFIN:curator]
comment: note not classified as nerve in FMA
subset: uberon_slim
synonym: "Cranial nerve" EXACT []
synonym: "cranial nerves" RELATED []
synonym: "Cranial neural tree organ" EXACT []
synonym: "cranial neural tree organ" EXACT []
xref: AAO:0000108
xref: BTO:0001104
xref: FMA:5865
xref: GAID:802
xref: HOG:0000279
xref: MA:0000215
xref: ncithesaurus:Cranial_Nerve
xref: NIF_GrossAnatomy:birnlex_1623
xref: OpenCyc:Mx4rvWvJVpwpEbGdrcN5Y29ycA
xref: TAO:0000641
xref: XAO:0003089
xref: ZFA:0000641
is_a: UBERON:0001021 ! nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: continuous_with UBERON:0000955 ! brain
relationship: continuous_with UBERON:0000955 ! brain
[Term]
id: UBERON:0001786
name: fovea centralis
alt_id: UBERON:FMA_58658-MA_0001307
def: "." [Wikipedia:Fovea_centralis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fovea" EXACT []
synonym: "Fovea centralis" EXACT []
xref: FMA:58658
xref: GAID:910
xref: MA:0001307
xref: ncithesaurus:Fovea_Centralis
xref: NIF_GrossAnatomy:birnlex_2543
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000053 ! macula lutea
[Term]
id: UBERON:0001787
name: photoreceptor layer of retina
alt_id: UBERON:FMA_58680-MA_0001308
def: "The layer within the retina where the photoreceptor cell receptor segments reside." [Wikipedia:Layer_of_rods_and_cones, ZFA:0000143]
subset: uberon_slim
synonym: "Layer of rods and cones" EXACT []
synonym: "layer of rods and cones" RELATED []
synonym: "neural retina" EXACT []
synonym: "Photoreceptor layer of retina" EXACT []
synonym: "retina photoreceptor layer" EXACT []
synonym: "retinal neural layer" EXACT []
synonym: "Stratum segmentorum externorum et internorum (Retina)" EXACT []
synonym: "stratum segmentorum externorum et internorum (retina)" EXACT []
xref: FMA:58680
xref: MA:0001308
xref: XAO:0003215
xref: ZFA:0000143
is_a: UBERON:0001781 ! layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001788
name: outer limiting layer of retina
alt_id: UBERON:FMA_58683-MA_0001309
comment: This class was created automatically from a combination of ontologies
synonym: "External limiting lamina of retina" EXACT []
synonym: "external limiting lamina of retina" EXACT []
synonym: "External limiting membrane of retina" EXACT []
synonym: "external limiting membrane of retina" EXACT []
synonym: "Outer limiting layer of retina" EXACT []
synonym: "Outer limiting membrane of retina" EXACT []
synonym: "outer limiting membrane of retina" EXACT []
synonym: "retina external limiting lamina" EXACT []
synonym: "Stratum limitans externum (Retina)" EXACT []
synonym: "stratum limitans externum (retina)" EXACT []
xref: FMA:58683
xref: MA:0001309
is_a: UBERON:0001781 ! layer of retina
[Term]
id: UBERON:0001789
name: outer nuclear layer of retina
alt_id: UBERON:FMA_58684-MA_0001315
def: "The layer within the retina where the photoreceptor cell bodies reside." [ZFA:0001464]
comment: This class was created automatically from a combination of ontologies
synonym: "ONL" NARROW []
synonym: "Outer nuclear layer of retina" EXACT []
synonym: "retina outer nuclear layer" EXACT []
synonym: "retinal outer nuclear layer" EXACT []
synonym: "Stratum nucleare externum (Retina)" EXACT []
synonym: "stratum nucleare externum (retina)" EXACT []
xref: FMA:58684
xref: MA:0001315
xref: XAO:0003219
xref: ZFA:0001464
is_a: UBERON:0001781 ! layer of retina
[Term]
id: UBERON:0001790
name: outer plexiform layer of retina
alt_id: UBERON:FMA_58685-MA_0001316
def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells[ZFA]. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells[GO]." [ZFA:0001330]
comment: This class was created automatically from a combination of ontologies
synonym: "OPL" NARROW []
synonym: "Outer plexiform layer of retina" EXACT []
synonym: "retina outer plexiform layer" EXACT []
synonym: "Stratum plexiforme externum" EXACT []
synonym: "stratum plexiforme externum" EXACT []
xref: FMA:58685
xref: MA:0001316
xref: XAO:0003218
xref: ZFA:0001330
is_a: UBERON:0001781 ! layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001791
name: inner nuclear layer of retina
alt_id: UBERON:FMA_58686-MA_0001311
def: "Layer of retina that contains amacrine, bipolar and horizontal cells." []
comment: This class was created automatically from a combination of ontologies
synonym: "INL" NARROW []
synonym: "Inner nuclear layer of retina" EXACT []
synonym: "retina inner nuclear layer" EXACT []
synonym: "retinal inner nuclear layer" EXACT []
synonym: "Stratum nucleare internum" EXACT []
synonym: "stratum nucleare internum" EXACT []
xref: FMA:58686
xref: MA:0001311
xref: XAO:0003221
xref: ZFA:0000119
is_a: UBERON:0001781 ! layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001792
name: ganglionic layer of retina
alt_id: UBERON:FMA_58687-MA_0001310
def: "." [Wikipedia:Ganglion_cell_layer]
comment: Check exact synonyms in ZFA / XAO
subset: uberon_slim
synonym: "Ganglion cell layer" EXACT []
synonym: "ganglion cell layer" EXACT []
synonym: "Ganglionic cell layer of retina" EXACT []
synonym: "ganglionic cell layer of retina" EXACT []
synonym: "Ganglionic layer of retina" EXACT []
synonym: "retina ganglion cell layer" EXACT []
synonym: "RGC layer" EXACT []
synonym: "Stratum ganglionicum (Retina)" EXACT []
synonym: "stratum ganglionicum (retina)" EXACT []
xref: BTO:0003398
xref: FMA:58687
xref: MA:0001310
xref: ncithesaurus:Ganglion_Cell_Layer
xref: XAO:0003223
xref: ZFA:0000024
is_a: UBERON:0001781 ! layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001793
name: nerve fiber layer of retina
alt_id: UBERON:FMA_58688-MA_0001314
comment: This class was created automatically from a combination of ontologies
synonym: "Layer of nerve fibers of retina" EXACT []
synonym: "layer of nerve fibers of retina" EXACT []
synonym: "Layer of nerve fibres of retina" EXACT []
synonym: "layer of nerve fibres of retina" EXACT []
synonym: "Nerve fiber layer of retina" EXACT []
synonym: "retina nerve fiber layer" EXACT []
synonym: "Stratum neurofibrarum (Retina)" EXACT []
synonym: "stratum neurofibrarum (retina)" EXACT []
synonym: "Stratum opticum of retina" EXACT []
synonym: "stratum opticum of retina" EXACT []
xref: FMA:58688
xref: HOG:0001169
xref: MA:0001314
is_a: UBERON:0001781 ! layer of retina
relationship: has_part UBERON:0001021 ! nerve
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001794
name: inner limiting layer of retina
alt_id: UBERON:FMA_58689-MA_0001313
comment: This class was created automatically from a combination of ontologies
synonym: "Inner limiting layer of retina" EXACT []
synonym: "Inner limiting membrane of retina" EXACT []
synonym: "inner limiting membrane of retina" EXACT []
synonym: "Internal limiting lamina of retina" EXACT []
synonym: "internal limiting lamina of retina" EXACT []
synonym: "Internal limiting membrane of retina" EXACT []
synonym: "internal limiting membrane of retina" EXACT []
synonym: "retina internal limiting lamina" EXACT []
xref: FMA:58689
xref: MA:0001313
is_a: UBERON:0001781 ! layer of retina
[Term]
id: UBERON:0001795
name: inner plexiform layer of retina
alt_id: UBERON:FMA_58704-MA_0001312
def: "The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells[GO]." []
comment: This class was created automatically from a combination of ontologies
synonym: "Inner plexiform layer of retina" EXACT []
synonym: "IPL" NARROW []
synonym: "retina inner plexiform layer" EXACT []
synonym: "Stratum plexiforme internum" EXACT []
synonym: "stratum plexiforme internum" EXACT []
xref: FMA:58704
xref: MA:0001312
xref: XAO:0003225
xref: ZFA:0001329
is_a: UBERON:0001781 ! layer of retina
intersection_of: UBERON:0001781 ! layer of retina
intersection_of: adjacent_to UBERON:0001791 ! inner nuclear layer of retina
intersection_of: adjacent_to UBERON:0001792 ! ganglionic layer of retina
relationship: adjacent_to UBERON:0001791 ! inner nuclear layer of retina
relationship: adjacent_to UBERON:0001792 ! ganglionic layer of retina
relationship: part_of UBERON:0003902 ! retinal neural layer
[Term]
id: UBERON:0001796
name: aqueous humor of eyeball
alt_id: UBERON:FMA_58819-MA_0001236
def: "Body substance in liquid state contained in the anterior and posterior chambers of the eyeball." [Wikipedia:Aqueous_humor]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Aqueous humor" EXACT []
synonym: "aqueous humor" EXACT []
synonym: "Aqueous humor of eyeball" EXACT []
synonym: "aqueous humour" EXACT []
xref: EHDAA:10196
xref: ENVO:02000024
xref: FMA:58819
xref: GAID:890
xref: HOG:0000548
xref: MA:0001236
xref: ncithesaurus:Aqueous_Humor
xref: OpenCyc:Mx4rvdGd-5wpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001766 ! anterior chamber of eyeball
[Term]
id: UBERON:0001797
name: vitreous humor
alt_id: UBERON:FMA_58822-MA_0001286
def: "Body substance of semisolid state which constitutes the vitreous body of the eye." [Wikipedia:Vitreous_humor]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Humor vitreous" EXACT []
synonym: "humor vitreous" EXACT []
synonym: "Vitreous humor" EXACT []
synonym: "vitreous humour" RELATED []
xref: BTO:0001451
xref: ENVO:02000032
xref: FMA:58822
xref: MA:0001286
xref: ncithesaurus:Vitreous_Humor
xref: OpenCyc:Mx4rv7ZIfZwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001798 ! vitreous body
[Term]
id: UBERON:0001798
name: vitreous body
alt_id: UBERON:FMA_58827-MA_0002462
def: "Mucoid tissue in the vitreous chamber of the eyeball. Examples: There are only two instances, right and left vitreous bodies." [Wikipedia:Vitreous_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Vitreous body" EXACT []
xref: ENVO:02000032
xref: FMA:58827
xref: GAID:919
xref: MA:0002462
xref: ncithesaurus:Vitreous_Body
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0001799 ! vitreous chamber of eyeball
[Term]
id: UBERON:0001799
name: vitreous chamber of eyeball
alt_id: UBERON:FMA_58848-MA_0002461
def: "." [Wikipedia:Vitreous_chamber]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Camera postrema" EXACT []
synonym: "camera postrema" EXACT []
synonym: "Camera vitrea" EXACT []
synonym: "camera vitrea" EXACT []
synonym: "Camera vitrea bulbi" EXACT []
synonym: "camera vitrea bulbi" EXACT []
synonym: "Postremal chamber" EXACT []
synonym: "postremal chamber" EXACT []
synonym: "Postremal chamber of eyeball" EXACT []
synonym: "postremal chamber of eyeball" EXACT []
synonym: "Vitreous chamber" EXACT []
synonym: "vitreous chamber" EXACT []
synonym: "Vitreous chamber of eyeball" EXACT []
xref: FMA:58848
xref: MA:0002461
xref: ncithesaurus:Vitreous_Chamber
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001802 ! posterior segment of eyeball
[Term]
id: UBERON:0001800
name: sensory ganglion
alt_id: UBERON:FMA_5885-MA_0002566
comment: This class was created automatically from a combination of ontologies
synonym: "Ganglion sensorium" EXACT []
synonym: "ganglion sensorium" EXACT []
synonym: "Sensory ganglion" EXACT []
xref: FMA:5885
xref: MA:0002566
xref: ncithesaurus:Sensory_Ganglion
is_a: UBERON:0000045 ! ganglion
[Term]
id: UBERON:0001801
name: anterior segment of eyeball
alt_id: UBERON:FMA_58865-MA_0002484
comment: This class was created automatically from a combination of ontologies
synonym: "Anterior segment of eyeball" EXACT []
synonym: "eye anterior segment" EXACT []
synonym: "Segmentum anterius (Bulbus oculi)" EXACT []
synonym: "segmentum anterius (bulbus oculi)" EXACT []
xref: FMA:58865
xref: MA:0002484
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0001802
name: posterior segment of eyeball
alt_id: UBERON:FMA_58868-MA_0002485
comment: This class was created automatically from a combination of ontologies
synonym: "eye posterior segment" EXACT []
synonym: "Posterior segment of eyeball" EXACT []
synonym: "Segmentum posterius (Bulbus oculi)" EXACT []
synonym: "segmentum posterius (bulbus oculi)" EXACT []
xref: FMA:58868
xref: MA:0002485
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0001803
name: epithelium of lens
alt_id: UBERON:FMA_58871-MA_0001301-ZFA_0001326
def: "The cells of the lens epithelium regulate most of the homeostatic functions of the lens.[6] As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions." [Wikipedia:Lens_(anatomy)#Lens_Epithelium]
comment: This class was created automatically from a combination of ontologies
synonym: "Epithelium of lens" EXACT []
synonym: "Lens epithelium" EXACT []
synonym: "lens epithelium" EXACT []
xref: BTO:0001873
xref: FMA:58871
xref: MA:0001301
xref: TAO:0001326
xref: ZFA:0001326
is_a: UBERON:0000484 ! simple cuboidal epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000965 ! lens
relationship: part_of UBERON:0000965 ! lens
[Term]
id: UBERON:0001804
name: capsule of lens
alt_id: UBERON:FMA_58881-MA_0001300
def: "a smooth, transparent basement membrane that completely surrounds the lens. It is synthesized by the lens epithelium and its main components are Type IV collagen and sulfated glycosaminoglycans (GAGs)." [Wikipedia:Lens_capsule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Capsule of lens" EXACT []
synonym: "Lens capsule" EXACT []
synonym: "lens capsule" EXACT []
xref: FMA:58881
xref: HOG:0000550
xref: MA:0001300
xref: ncithesaurus:Lens_Capsule
is_a: UBERON:0003893 ! capsule
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0000965 ! lens
relationship: surrounds UBERON:0000965 ! lens
[Term]
id: UBERON:0001805
name: autonomic ganglion
alt_id: UBERON:FMA_5889-MA_0000220
def: "ganglion that has dendrites that form a junction between autonomic nerves originating from the central nervous system and autonomic nerves innervating their target organs in the periphery. There are two subtypes, sympathetic ganglion and parasympathetic ganglion." [Wikipedia:Autonomic_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Autonomic ganglion" EXACT []
xref: FMA:5889
xref: MA:0000220
xref: ncithesaurus:Autonomic_Ganglion
is_a: UBERON:0000045 ! ganglion
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0002410 ! autonomic nervous system
relationship: part_of UBERON:0002410 ! autonomic nervous system
[Term]
id: UBERON:0001806
name: sympathetic ganglion
alt_id: UBERON:FMA_5890-MA_0000226
def: "." [Wikipedia:Sympathetic_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ganglion sympatheticum" EXACT []
synonym: "ganglion sympatheticum" EXACT []
synonym: "Sympathetic ganglion" EXACT []
xref: BTO:0001333
xref: FMA:5890
xref: MA:0000226
xref: ncithesaurus:Sympathetic_Ganglion
is_a: UBERON:0001805 ! autonomic ganglion
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0000013 ! sympathetic nervous system
[Term]
id: UBERON:0001807
name: paravertebral ganglion
alt_id: UBERON:FMA_5891-ZFA_0001556
def: "Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord." [Wikipedia:Paravertebral_ganglion, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ganglion of sympathetic trunk" EXACT []
synonym: "ganglion of sympathetic trunk" EXACT []
synonym: "Ganglion trunci sympathetici" EXACT []
synonym: "ganglion trunci sympathetici" EXACT []
synonym: "Paravertebral ganglion" EXACT []
synonym: "Sympathetic chain ganglion" EXACT []
synonym: "sympathetic chain ganglion" EXACT []
xref: FMA:5891
xref: TAO:0001556
xref: ZFA:0001556
is_a: UBERON:0001806 ! sympathetic ganglion
[Term]
id: UBERON:0001808
name: parasympathetic ganglion
alt_id: UBERON:FMA_5894-MA_0002469
def: "." [Wikipedia:Parasympathetic_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Parasympathetic ganglion" EXACT []
xref: BTO:0001256
xref: FMA:5894
xref: MA:0002469
xref: ncithesaurus:Parasympathetic_Ganglion
is_a: UBERON:0001805 ! autonomic ganglion
[Term]
id: UBERON:0001809
name: enteric ganglion
alt_id: UBERON:FMA_5896-MA_0001144
comment: This class was created automatically from a combination of ontologies
synonym: "Enteric ganglion" EXACT []
synonym: "Intramural ganglion" EXACT []
synonym: "intramural ganglion" EXACT []
xref: FMA:5896
xref: MA:0001144
xref: ncithesaurus:Enteric_Ganglion
is_a: UBERON:0001808 ! parasympathetic ganglion
relationship: part_of UBERON:0002005 ! enteric nervous system
[Term]
id: UBERON:0001810
name: nerve plexus
alt_id: UBERON:FMA_5901-MA_0002407
def: "Anatomical junction where subdivisions of two or more neural trees interconnect with one another to form a network through which nerve fibers of the constituent nerve trees become regrouped; together with other nerve plexuses, nerves and ganglia, it constitutes the peripheral nervous system. Examples: cervical nerve plexus, brachial nerve plexus, sacral nerve plexus." [Wikipedia:Nerve_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Nerve plexus" EXACT []
xref: BTO:0000205
xref: EHDAA:3780
xref: FMA:5901
xref: MA:0002407
xref: ncithesaurus:Nerve_Plexus
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001811
name: conjunctiva
alt_id: UBERON:FMA_59011-XAO_0000182
def: "." [Wikipedia:Conjunctiva]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Conjunctiva" EXACT []
synonym: "Wall of conjunctival sac" EXACT []
synonym: "wall of conjunctival sac" EXACT []
xref: BTO:0003415
xref: EFO:0000374
xref: FMA:59011
xref: GAID:898
xref: HAO:0000221
xref: MA:0000265
xref: ncithesaurus:Conjunctiva
xref: XAO:0000182
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0001812
name: palpebral conjunctiva
alt_id: UBERON:FMA_59025-MA_0001265
comment: This class was created automatically from a combination of ontologies
synonym: "Palpebral conjunctiva" EXACT []
synonym: "Tunica conjunctiva palpebrum" EXACT []
synonym: "tunica conjunctiva palpebrum" EXACT []
xref: FMA:59025
xref: MA:0001265
xref: ncithesaurus:Palpebral_Conjunctiva
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0001813
name: somatic nerve plexus
alt_id: UBERON:FMA_5903-MA_0000235
comment: This class was created automatically from a combination of ontologies
synonym: "Plexus of spinal nerves" EXACT []
synonym: "plexus of spinal nerves" EXACT []
synonym: "Somatic nerve plexus" EXACT []
synonym: "Spinal nerve plexus" EXACT []
synonym: "spinal nerve plexus" EXACT []
xref: FMA:5903
xref: HOG:0000925
xref: MA:0000235
xref: ncithesaurus:Spinal_Nerve_Plexus
is_a: UBERON:0001810 ! nerve plexus
[Term]
id: UBERON:0001814
name: brachial nerve plexus
alt_id: UBERON:FMA_5906-MA_0001180
def: "." [Wikipedia:Brachial_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Brachial nerve plexus" EXACT []
synonym: "Brachial plexus" EXACT []
synonym: "brachial plexus" EXACT []
xref: EHDAA:3782
xref: FMA:5906
xref: GAID:842
xref: HOG:0000372
xref: MA:0001180
xref: ncithesaurus:Brachial_Plexus
is_a: UBERON:0001021 ! nerve
is_a: UBERON:0001813 ! somatic nerve plexus
is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve
relationship: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0001815
name: lumbosacral nerve plexus
alt_id: UBERON:FMA_5907-MA_0001181
def: "." [Wikipedia:Lumbosacral_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lumbosacral nerve plexus" EXACT []
synonym: "Lumbosacral plexus" EXACT []
synonym: "lumbosacral plexus" EXACT []
xref: EHDAA:4673
xref: FMA:5907
xref: GAID:849
xref: MA:0001181
xref: ncithesaurus:Lumbosacral_Plexus
is_a: UBERON:0001813 ! somatic nerve plexus
[Term]
id: UBERON:0001816
name: autonomic nerve plexus
alt_id: UBERON:FMA_5910-MA_0000221
comment: This class was created automatically from a combination of ontologies
synonym: "Autonomic nerve plexus" EXACT []
synonym: "Autonomic plexus" EXACT []
synonym: "autonomic plexus" EXACT []
synonym: "Visceral nerve plexus" EXACT []
synonym: "visceral nerve plexus" EXACT []
synonym: "Visceral plexus" EXACT []
synonym: "visceral plexus" EXACT []
xref: FMA:5910
xref: MA:0000221
is_a: UBERON:0001810 ! nerve plexus
relationship: part_of UBERON:0002410 ! autonomic nervous system
[Term]
id: UBERON:0001817
name: lacrimal gland
alt_id: UBERON:FMA_59101-MA_0001296
def: "Lobular organ the parenchyma of which consists of glandular acini which communicate the lacrimal sac. Examples: There only two instances, right lacrimal and left lacrimal glands." [Wikipedia:Lacrimal_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lacrimal gland" EXACT []
xref: EFO:0001389
xref: FMA:59101
xref: HOG:0001476
xref: MA:0001296
xref: ncithesaurus:Lacrimal_Gland
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0001750 ! lacrimal apparatus
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0001818
name: tarsal gland
alt_id: UBERON:FMA_59104-MA_0001249
def: "." [Wikipedia:Tarsal_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Gland of Meibom" EXACT []
synonym: "gland of meibom" EXACT []
synonym: "Meibomian gland" EXACT []
synonym: "meibomian gland" EXACT []
synonym: "palpebral gland" RELATED []
synonym: "Tarsal gland" EXACT []
xref: FMA:59104
xref: GAID:899
xref: MA:0001249
xref: ncithesaurus:Meibomian_Gland
is_a: UBERON:0001821 ! sebaceous gland
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0001819
name: palpebral fissure
alt_id: UBERON:FMA_59110-MA_0001266
def: "." [Wikipedia:Palpebral_fissure]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Palpebral fissure" EXACT []
xref: FMA:59110
xref: MA:0001266
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0001820
name: sweat gland
alt_id: UBERON:FMA_59152-MA_0000150
def: "." [Wikipedia:Sweat_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sweat gland" EXACT []
xref: BTO:0001331
xref: FMA:59152
xref: GAID:943
xref: HOG:0001467
xref: MA:0000150
xref: ncithesaurus:Sweat_Gland
xref: OpenCyc:Mx4rvVjx15wpEbGdrcN5Y29ycA
is_a: UBERON:0002530 ! gland
is_a: UBERON:0003297 ! implied link automatically realized ! gland of integumental system
intersection_of: UBERON:0002530 ! gland
intersection_of: secretes UBERON:0001089 ! sweat
relationship: part_of UBERON:0002097 ! skin
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0001821
name: sebaceous gland
alt_id: UBERON:FMA_59160-MA_0002565
def: "." [Wikipedia:Sebaceous_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sebaceous gland" EXACT []
xref: BTO:0001980
xref: FMA:59160
xref: GAID:900
xref: HOG:0001468
xref: MA:0002565
xref: ncithesaurus:Sebaceous_Gland
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0001822
name: orbital septum
alt_id: UBERON:FMA_59328-MA_0001259
def: "a membranous sheet that acts as the anterior boundary of the orbit. It extends from the orbital rims to the eyelids[WP]." [Wikipedia:Orbital_septum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Orbital septum" EXACT []
xref: FMA:59328
xref: MA:0001259
is_a: UBERON:0003037 ! septum
relationship: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0001823
name: nasal cartilage
alt_id: UBERON:FMA_59502-MA_0001883
def: "." [Wikipedia:Nasal_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Nasal cartilage" EXACT []
xref: FMA:59502
xref: MA:0001883
xref: ncithesaurus:Nasal_Cartilage
is_a: UBERON:0002236 ! costal cartilage
[Term]
id: UBERON:0001824
name: mucosa of larynx
alt_id: UBERON:FMA_59662-MA_0001766
comment: This class was created automatically from a combination of ontologies
synonym: "Laryngeal mucosa" EXACT []
synonym: "laryngeal mucosa" EXACT []
synonym: "larynx mucosa" EXACT []
synonym: "Mucosa of larynx" EXACT []
synonym: "Mucous membrane of larynx" EXACT []
synonym: "mucous membrane of larynx" EXACT []
xref: FMA:59662
xref: GAID:301
xref: MA:0001766
xref: ncithesaurus:Laryngeal_Mucosa
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001737 ! larynx
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0001825
name: paranasal sinus
alt_id: UBERON:FMA_59679-MA_0000431
def: "." [Wikipedia:Paranasal_sinus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Paranasal sinus" EXACT []
xref: FMA:59679
xref: GAID:355
xref: MA:0000431
xref: ncithesaurus:Paranasal_Sinus
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0001826
name: mucosa of nose
alt_id: UBERON:FMA_59684-MA_0001324
comment: This class was created automatically from a combination of ontologies
synonym: "Mucosa of nose" EXACT []
synonym: "Mucous membrane of nose" EXACT []
synonym: "mucous membrane of nose" EXACT []
synonym: "nasal cavity epithelium" EXACT []
synonym: "Nasal mucosa" EXACT []
synonym: "nasal mucosa" RELATED []
xref: BTO:0000912
xref: FMA:59684
xref: GAID:302
xref: MA:0001324
xref: ncithesaurus:Nasal_Cavity_Epithelium
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001707 ! nasal cavity
relationship: part_of UBERON:0001707 ! nasal cavity
[Term]
id: UBERON:0001827
name: tear
alt_id: UBERON:FMA_59756-MA_0002508
def: "Secretion produced by the lacrimal gland." [Wikipedia:Tear]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Tear" EXACT []
xref: BTO:0001499
xref: ENVO:02000034
xref: FMA:59756
xref: GAID:1173
xref: MA:0002508
xref: ncithesaurus:Tear
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001828
name: gingiva
alt_id: UBERON:FMA_59762-MA_0000342
def: "." [Wikipedia:Gingiva]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Gingiva" EXACT []
synonym: "Gum" EXACT []
synonym: "gum" RELATED []
xref: BTO:0000519
xref: EFO:0001925
xref: FMA:59762
xref: GAID:1257
xref: galen:Gingiva
xref: HOG:0001269
xref: MA:0000342
xref: ncithesaurus:Gingiva
xref: OpenCyc:Mx4rvViWnZwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000166 ! oral opening
[Term]
id: UBERON:0001829
name: major salivary gland
alt_id: UBERON:FMA_59788-MA_0002478
comment: This class was created automatically from a combination of ontologies
synonym: "Major salivary gland" EXACT []
xref: FMA:59788
xref: MA:0002478
xref: ncithesaurus:Major_Salivary_Gland
is_a: UBERON:0001044 ! salivary gland
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0001830
name: minor salivary gland
alt_id: UBERON:FMA_59789-MA_0002479
comment: This class was created automatically from a combination of ontologies
synonym: "Minor salivary gland" EXACT []
xref: FMA:59789
xref: GAID:940
xref: MA:0002479
xref: ncithesaurus:Minor_Salivary_Gland
is_a: UBERON:0001044 ! salivary gland
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0001831
name: parotid gland
alt_id: UBERON:FMA_59790-MA_0001585
def: "." [Wikipedia:Parotid_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Parotid" EXACT []
synonym: "parotid" EXACT []
synonym: "Parotid gland" EXACT []
xref: BTO:0001004
xref: EFO:0002558
xref: FMA:59790
xref: GAID:938
xref: HOG:0000308
xref: MA:0001585
xref: ncithesaurus:Parotid_Gland
is_a: UBERON:0001829 ! major salivary gland
relationship: part_of UBERON:0001567 ! cheek
[Term]
id: UBERON:0001832
name: sublingual gland
alt_id: UBERON:FMA_59791-MA_0001588
def: "." [Wikipedia:Sublingual_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ductus sublingualis" EXACT []
synonym: "ductus sublingualis" EXACT []
synonym: "Rivinus' gland" EXACT []
synonym: "rivinus' gland" EXACT []
synonym: "Sublingual gland" EXACT []
xref: BTO:0001315
xref: FMA:59791
xref: GAID:941
xref: HOG:0000363
xref: MA:0001588
is_a: UBERON:0001829 ! major salivary gland
[Term]
id: UBERON:0001833
name: lip
alt_id: UBERON:FMA_59816-ZFA_0007006
def: "One of the two fleshy folds which surround the opening of the mouth. http://www.medterms.com/script/main/art.asp?articlekey=9458" [Wikipedia:Lip, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lip" EXACT []
synonym: "lips" RELATED []
xref: BTO:0001647
xref: FMA:59816
xref: GAID:76
xref: HOG:0000677
xref: MA:0000343
xref: ncithesaurus:Lip
xref: OpenCyc:Mx4rvVi4U5wpEbGdrcN5Y29ycA
xref: TAO:0007006
xref: ZFA:0007006
is_a: UBERON:0003102 ! surface structure
relationship: surrounds UBERON:0000166 ! oral opening
[Term]
id: UBERON:0001834
name: upper lip
alt_id: UBERON:FMA_59817-MA_0000919
def: "." [Wikipedia:Upper_lip]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Upper lip" EXACT []
xref: FMA:59817
xref: MA:0000919
xref: OpenCyc:Mx4rvWPv7pwpEbGdrcN5Y29ycA
xref: ZFA:0005226
is_a: UBERON:0001833 ! lip
[Term]
id: UBERON:0001835
name: lower lip
alt_id: UBERON:FMA_59818-MA_0000921
def: "." [Wikipedia:Lower_lip]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lower lip" EXACT []
xref: FMA:59818
xref: MA:0000921
xref: OpenCyc:Mx4rv842UpwpEbGdrcN5Y29ycA
xref: ZFA:0005225
is_a: UBERON:0001833 ! lip
[Term]
id: UBERON:0001836
name: saliva
alt_id: UBERON:FMA_59862-MA_0002507
def: "In humans, the saliva is a turbid and slightly viscous fluid, generally of an alkaline reaction, and is secreted by the parotid, submaxillary, and sublingual glands. In the mouth the saliva is mixed with the secretion from the buccal glands. In man and many animals, saliva is an important digestive fluid on account of the presence of the peculiar enzyme, ptyalin[GO]." [GO:0046541, Wikipedia:Saliva]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001202
xref: ENVO:02000036
xref: FMA:59862
xref: GAID:1167
xref: MA:0002507
xref: MAT:0000444
xref: ncithesaurus:Saliva
xref: OpenCyc:Mx4rvVjJ95wpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001837
name: duct of salivary gland
alt_id: UBERON:FMA_59908-MA_0001586
def: "." [Wikipedia:Salivary_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Duct of salivary gland" EXACT []
synonym: "Salivary duct" EXACT []
synonym: "salivary duct" EXACT []
synonym: "Salivary gland duct" EXACT []
synonym: "salivary gland duct" EXACT []
xref: FMA:59908
xref: GAID:939
xref: MA:0001586
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0001044 ! salivary gland
[Term]
id: UBERON:0001838
name: sublingual duct
alt_id: UBERON:FMA_59983-MA_0002699
def: "." [Wikipedia:Sublingual_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sublingual duct" EXACT []
xref: FMA:59983
xref: MA:0002699
is_a: UBERON:0001837 ! duct of salivary gland
relationship: part_of UBERON:0001832 ! sublingual gland
[Term]
id: UBERON:0001839
name: bony labyrinth
alt_id: UBERON:FMA_60179-MA_0000238-XAO_0000193
def: "." [Wikipedia:Bony_labyrinth]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bony labyrinth" EXACT []
synonym: "Osseous labyrinth" EXACT []
synonym: "osseous labyrinth" EXACT []
synonym: "osseus labyrinth" RELATED []
xref: FMA:60179
xref: MA:0000238
xref: ncithesaurus:Osseous_Labyrinth
xref: XAO:0000193
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001694 ! petrous part of temporal bone
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0001840
name: semicircular canal
alt_id: UBERON:FMA_60186-MA_0000249-XAO_0000198-ZFA_0000431
def: "Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Semicircular_canal, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "scc" RELATED []
synonym: "Semicircular canal" EXACT []
synonym: "semicircular canals" RELATED []
synonym: "semicircular duct" RELATED []
xref: BTO:0003383
xref: FMA:60186
xref: GAID:776
xref: HOG:0001144
xref: MA:0000249
xref: ncithesaurus:Semicircular_Canal
xref: TAO:0000431
xref: XAO:0000198
xref: ZFA:0000431
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001839 ! bony labyrinth
[Term]
id: UBERON:0001841
name: anterior semicircular canal
alt_id: UBERON:FMA_60187-MA_0001207-ZFA_0000314
def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Anterior_semicircular_canal, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anterior semicircular canal" EXACT []
synonym: "anterior semicircular canals" RELATED []
synonym: "anterior semicircular duct" RELATED []
synonym: "rostral vertical semicircular canal" RELATED []
synonym: "Superior semicircular canal" EXACT []
synonym: "superior semicircular canal" EXACT []
xref: EHDAA:7802
xref: FMA:60187
xref: MA:0001207
xref: ncithesaurus:Superior_Semicircular_Canal
xref: TAO:0000314
xref: ZFA:0000314
is_a: UBERON:0001840 ! semicircular canal
relationship: part_of UBERON:0001840 ! semicircular canal
[Term]
id: UBERON:0001842
name: posterior semicircular canal
alt_id: UBERON:FMA_60190-MA_0001209-ZFA_0000262
def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Posterior_semicircular_canal, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "caudal vertical semicircular canal" RELATED []
synonym: "Posterior semicircular canal" EXACT []
synonym: "posterior semicircular canals" RELATED []
synonym: "posterior semicircular duct" RELATED []
xref: EHDAA:7796
xref: FMA:60190
xref: MA:0001209
xref: ncithesaurus:Posterior_Semicircular_Canal
xref: TAO:0000262
xref: ZFA:0000262
is_a: UBERON:0001840 ! semicircular canal
relationship: part_of UBERON:0001840 ! semicircular canal
[Term]
id: UBERON:0001843
name: lateral semicircular canal
alt_id: UBERON:FMA_60193-MA_0001208-ZFA_0000220
def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Lateral_semicircular_canal, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Horizontal semicircular canal" EXACT []
synonym: "horizontal semicircular canal" RELATED []
synonym: "Lateral semicircular canal" EXACT []
synonym: "lateral semicircular canals" RELATED []
synonym: "lateral semicircular duct" RELATED []
xref: EHDAA:7790
xref: FMA:60193
xref: MA:0001208
xref: TAO:0000220
xref: ZFA:0000220
is_a: UBERON:0001840 ! semicircular canal
relationship: part_of UBERON:0001840 ! semicircular canal
[Term]
id: UBERON:0001844
name: cochlea
alt_id: UBERON:FMA_60201-MA_0000240-MIAA_0000144-XAO_0000197
def: "." [Wikipedia:Cochlea]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cochlea" EXACT []
synonym: "Cochlear part of bony labyrinth" EXACT []
synonym: "cochlear part of bony labyrinth" EXACT []
synonym: "lagena" EXACT []
xref: AAO:0000253
xref: BTO:0000267
xref: EFO:0000357
xref: FMA:60201
xref: GAID:724
xref: HOG:0000691
xref: MA:0000240
xref: MAT:0000144
xref: MIAA:0000144
xref: ncithesaurus:Cochlea
xref: NIF_GrossAnatomy:birnlex_1190
xref: NIF_GrossAnatomy:birnlex_883
xref: TAO:0000374
xref: XAO:0000197
xref: ZFA:0000374
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001839 ! bony labyrinth
[Term]
id: UBERON:0001845
name: perilymph
alt_id: UBERON:FMA_60908-MA_0002529
def: "Transudate contained in the osseous labyrinth outside the membranous labyrinth." [Wikipedia:Perilymph]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Perilymph" EXACT []
xref: FMA:60908
xref: GAID:1185
xref: MA:0002529
xref: ncithesaurus:Perilymph
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001846
name: internal ear
alt_id: UBERON:FMA_60909-MA_0000237-MIAA_0000145-XAO_0000192-ZFA_0000217
def: "Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation. // The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)" [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ear" RELATED []
synonym: "Inner Ear" EXACT []
synonym: "inner ear" EXACT []
synonym: "Internal ear" EXACT []
synonym: "labyrinth" RELATED []
synonym: "otic capsule" RELATED []
synonym: "otocyst" RELATED []
xref: AAO:0000238
xref: BTO:0000630
xref: EFO:0001363
xref: EHDAA:504
xref: FMA:60909
xref: galen:InnerEar
xref: HOG:0000284
xref: MA:0000237
xref: MAT:0000145
xref: MIAA:0000145
xref: ncithesaurus:Internal_Ear
xref: NIF_GrossAnatomy:birnlex_1196
xref: TAO:0000217
xref: XAO:0000192
xref: ZFA:0000217
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001690 ! ear
[Term]
id: UBERON:0001847
name: lobule of pinna
alt_id: UBERON:FMA_60984-MA_0002468
def: "." [Wikipedia:Ear_lobe]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Auricular lobule" EXACT []
synonym: "auricular lobule" EXACT []
synonym: "Ear lobe" EXACT []
synonym: "ear lobe" EXACT []
synonym: "Ear lobule" EXACT []
synonym: "ear lobule" RELATED []
synonym: "Lobe of ear" EXACT []
synonym: "lobe of ear" EXACT []
synonym: "Lobule of auricle" EXACT []
synonym: "lobule of auricle" RELATED []
synonym: "Lobule of auricle of ear" EXACT []
synonym: "lobule of auricle of ear" EXACT []
synonym: "Lobule of pinna" EXACT []
synonym: "Pinna lobule" EXACT []
synonym: "pinna lobule" EXACT []
xref: FMA:60984
xref: MA:0002468
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0001848
name: auricular cartilage
alt_id: UBERON:FMA_61013-MA_0001227
comment: This class was created automatically from a combination of ontologies
synonym: "Auricular cartilage" EXACT []
synonym: "Cartilage of pinna" EXACT []
synonym: "cartilage of pinna" EXACT []
xref: FMA:61013
xref: MA:0001227
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0001849
name: membranous labyrinth
alt_id: UBERON:FMA_61022-MA_0000242-XAO_0000194
def: "Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left." [Wikipedia:Membranous_labyrinth]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Membranous labyrinth" EXACT []
xref: FMA:61022
xref: HOG:0000729
xref: MA:0000242
xref: ncithesaurus:Membranous_Labyrinth
xref: XAO:0000194
is_a: UBERON:0000020 ! implied link automatically realized ! sense organ
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0001850
name: lacrimal duct
alt_id: UBERON:FMA_61063-MA_0001295
def: "Organ with organ cavity which connects the vestibule of the conjunctival sac to the nasal cavity. Examples: There are only two lacrimal ducts, the right and the left lacrimal ducts." [Wikipedia:Lacrimal_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lacrimal duct" EXACT []
synonym: "tear duct" RELATED []
xref: FMA:61063
xref: MA:0001295
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0001750 ! lacrimal apparatus
[Term]
id: UBERON:0001851
name: cortex
alt_id: UBERON:FMA_61109-XAO_0000216
def: "Outermost layer of an organ[WP]." [Wikipedia:Cortex_(anatomy)]
comment: This class is used in a very general sense
subset: uberon_slim
synonym: "Cortex" EXACT []
xref: EFO:0000383
xref: FMA:61109
xref: galen:Cortex
is_a: UBERON:0000064 ! organ part
relationship: surrounds UBERON:0000062 ! organ
[Term]
id: UBERON:0001852
name: endolymph
alt_id: UBERON:FMA_61112-MA_0002528
def: "Transudate contained within the membranous labyrinth." [Wikipedia:Endolymph]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Endolymph" EXACT []
xref: FMA:61112
xref: GAID:1184
xref: MA:0002528
xref: ncithesaurus:Endolymph
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001853
name: utricle of membranous labyrinth
alt_id: UBERON:FMA_61113-MA_0000247-XAO_0000195-ZFA_0000700
def: "." [Wikipedia:Utricle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Membranous labyrinth utricle" EXACT []
synonym: "membranous labyrinth utricle" EXACT []
synonym: "Utricle" EXACT []
synonym: "utricle" EXACT []
synonym: "Utricle of membranous labyrinth" EXACT []
synonym: "Utriculus (Labyrinthus vestibularis)" EXACT []
synonym: "utriculus (labyrinthus vestibularis)" EXACT []
xref: BTO:0001807
xref: EHDAA:4726
xref: FMA:61113
xref: HOG:0000289
xref: MA:0000247
xref: ncithesaurus:Utricle
xref: TAO:0000700
xref: XAO:0000195
xref: ZFA:0000700
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001862 ! vestibular labyrinth
[Term]
id: UBERON:0001854
name: saccule of membranous labyrinth
alt_id: UBERON:FMA_61116-MA_0000246-ZFA_0000428
def: "." [Wikipedia:Saccule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Membranous labyrinth saccule" EXACT []
synonym: "membranous labyrinth saccule" EXACT []
synonym: "Saccule" EXACT []
synonym: "saccule" EXACT []
synonym: "Saccule of membranous labyrinth" EXACT []
synonym: "Sacculus (Labyrinthus vestibularis)" EXACT []
synonym: "sacculus (labyrinthus vestibularis)" EXACT []
xref: BTO:0001805
xref: EHDAA:4712
xref: FMA:61116
xref: HOG:0000374
xref: MA:0000246
xref: ncithesaurus:Saccule
xref: TAO:0000428
xref: ZFA:0000428
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001862 ! vestibular labyrinth
[Term]
id: UBERON:0001855
name: cochlear duct of membranous labyrinth
alt_id: UBERON:FMA_61119-MA_0000243
def: "." [Wikipedia:Cochlear_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cochlear duct" EXACT []
synonym: "cochlear duct" EXACT []
synonym: "Cochlear duct of membranous labyrinth" EXACT []
synonym: "Reissner's canal" EXACT []
synonym: "reissner's canal" EXACT []
xref: BTO:0001692
xref: EHDAA:4718
xref: FMA:61119
xref: GAID:874
xref: HOG:0000507
xref: MA:0000243
xref: ncithesaurus:Cochlear_Duct
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0001844 ! cochlea
relationship: part_of UBERON:0001849 ! membranous labyrinth
[Term]
id: UBERON:0001856
name: semicircular duct
alt_id: UBERON:FMA_61122-MA_0000251
comment: This class was created automatically from a combination of ontologies
synonym: "membranous semicircular canal" RELATED []
synonym: "Semicircular duct" EXACT []
xref: FMA:61122
xref: HOG:0000238
xref: MA:0000251
xref: ncithesaurus:Semicircular_Duct
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0001840 ! semicircular canal
relationship: part_of UBERON:0001862 ! vestibular labyrinth
[Term]
id: UBERON:0001857
name: anterior semicircular duct
alt_id: UBERON:FMA_61123-MA_0001211
comment: This class was created automatically from a combination of ontologies
synonym: "Anterior semicircular duct" EXACT []
xref: FMA:61123
xref: HOG:0000246
xref: MA:0001211
is_a: UBERON:0001856 ! semicircular duct
[Term]
id: UBERON:0001858
name: posterior semicircular duct
alt_id: UBERON:FMA_61126-MA_0001214
def: "." [Wikipedia:Posterior_semicircular_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Posterior semicircular duct" EXACT []
xref: FMA:61126
xref: HOG:0000248
xref: MA:0001214
is_a: UBERON:0001856 ! semicircular duct
[Term]
id: UBERON:0001859
name: lateral semicircular duct
alt_id: UBERON:FMA_61129-MA_0001213
def: "." [Wikipedia:Lateral_semicircular_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lateral semicircular duct" EXACT []
xref: FMA:61129
xref: HOG:0000247
xref: MA:0001213
is_a: UBERON:0001856 ! semicircular duct
[Term]
id: UBERON:0001860
name: endolymphatic duct
alt_id: UBERON:FMA_61246-MA_0001187
def: "." [Wikipedia:Endolymphatic_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Endolymphatic duct" EXACT []
xref: FMA:61246
xref: GAID:886
xref: MA:0001187
xref: ZFA:0001705
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0002049 ! vasculature
[Term]
id: UBERON:0001861
name: ductus reuniens
alt_id: UBERON:FMA_61252-MA_0000244
comment: This class was created automatically from a combination of ontologies
synonym: "Ductus reuniens" EXACT []
xref: FMA:61252
xref: MA:0000244
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001849 ! membranous labyrinth
[Term]
id: UBERON:0001862
name: vestibular labyrinth
alt_id: UBERON:FMA_61255-MA_0000245
comment: This class was created automatically from a combination of ontologies
synonym: "vestibular apparatus" RELATED []
synonym: "Vestibular labyrinth" EXACT []
xref: BTO:0001856
xref: FMA:61255
xref: MA:0000245
xref: ncithesaurus:Vestibular_Labyrinth
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001849 ! membranous labyrinth
[Term]
id: UBERON:0001863
name: scala vestibuli
alt_id: UBERON:FMA_61269-MA_0001206
def: "." [Wikipedia:Scala_vestibuli]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Scala vestibuli" EXACT []
xref: FMA:61269
xref: MA:0001206
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001844 ! cochlea
relationship: part_of UBERON:0002278 ! perilymphatic space
[Term]
id: UBERON:0001864
name: scala tympani
alt_id: UBERON:FMA_61272-MA_0001205
def: "." [Wikipedia:Scala_tympani]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Scala tympani" EXACT []
xref: FMA:61272
xref: GAID:879
xref: MA:0001205
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001844 ! cochlea
relationship: part_of UBERON:0002278 ! perilymphatic space
[Term]
id: UBERON:0001865
name: cartilaginous external acoustic tube
alt_id: UBERON:FMA_61289-MA_0001234
comment: This class was created automatically from a combination of ontologies
synonym: "Cartilaginous external acoustic meatus" EXACT []
synonym: "cartilaginous external acoustic meatus" EXACT []
synonym: "Cartilaginous external acoustic tube" EXACT []
synonym: "Cartilaginous part of external acoustic meatus" EXACT []
synonym: "cartilaginous part of external acoustic meatus" EXACT []
synonym: "external acoustic meatus cartilaginous part" EXACT []
xref: FMA:61289
xref: MA:0001234
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001352 ! external acoustic meatus
[Term]
id: UBERON:0001866
name: sebum
alt_id: UBERON:FMA_61304-MA_0002538
def: "." [Wikipedia:Sebum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sebum" EXACT []
xref: BTO:0001981
xref: ENVO:02000037
xref: FMA:61304
xref: GAID:1168
xref: MA:0002538
xref: ncithesaurus:Sebum
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001867
name: cartilage of external ear
alt_id: UBERON:FMA_61339-MA_0001886
comment: This class was created automatically from a combination of ontologies
synonym: "Cartilage of external ear" EXACT []
synonym: "External ear cartilage" EXACT []
synonym: "external ear cartilage" EXACT []
xref: FMA:61339
xref: MA:0001886
xref: ncithesaurus:External_Ear_Cartilage
is_a: UBERON:0001996 ! elastic cartilage
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0001691 ! external ear
relationship: part_of UBERON:0001691 ! external ear
[Term]
id: UBERON:0001868
name: skin of chest
alt_id: UBERON:FMA_61415-MA_0000553
comment: This class was created automatically from a combination of ontologies
synonym: "Chest skin" EXACT []
synonym: "chest skin" EXACT []
synonym: "Skin of chest" EXACT []
xref: FMA:61415
xref: MA:0000553
is_a: UBERON:0001418 ! skin of thorax
intersection_of: UBERON:0000014 ! zone of skin
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0001869
name: cerebral hemisphere
alt_id: UBERON:FMA_61817-MA_0000133
def: "One of two bilateral, largely symmetrical organ subdivisions within the telencephalon which contain the cerebral cortex and cerebral white matter." [Wikipedia:Cerebral_hemisphere]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cerebral hemisphere" EXACT []
synonym: "cerebrum" RELATED []
xref: BTO:0000231
xref: EFO:0002521
xref: FMA:61817
xref: galen:CerebralHemisphere
xref: MA:0000133
xref: ncithesaurus:Cerebral_Hemisphere
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0001870
name: frontal lobe
alt_id: UBERON:FMA_61824-MA_0000905
def: "Frontal lobe is the anterior-most of five lobes of the cerebral hemisphere. It is bounded by the central sulcus on its posterior border and by the longitudinal cerebral fissure on its medial border." [Wikipedia:Frontal_lobe]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Frontal cortex" EXACT []
synonym: "frontal cortex" EXACT []
synonym: "Frontal lobe" EXACT []
synonym: "Frontal region" EXACT []
synonym: "frontal region" EXACT []
xref: BTO:0000484
xref: EFO:0000913
xref: FMA:61824
xref: GAID:674
xref: MA:0000905
xref: MAT:0000505
xref: ncithesaurus:Frontal_Lobe
xref: NIF_GrossAnatomy:birnlex_928
xref: OpenCyc:Mx4rv3OJ8JwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: adjacent_to UBERON:0001871 ! temporal lobe
relationship: adjacent_to UBERON:0001872 ! parietal lobe
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0001871
name: temporal lobe
alt_id: UBERON:FMA_61825-MA_0000941
def: "Temporal lobe is the ventrolateral lobe of five lobes comprising each cerebral hemisphere. It is bounded dorsally by the lateral fissure and posteriorly by an arbitrary border shared with the occipital lobe." [Wikipedia:Temporal_lobe]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Temporal cortex" EXACT []
synonym: "temporal cortex" EXACT []
synonym: "Temporal lobe" EXACT []
xref: BTO:0001355
xref: EFO:0000917
xref: FMA:61825
xref: GAID:635
xref: MA:0000941
xref: MAT:0000508
xref: ncithesaurus:Temporal_Lobe
xref: NIF_GrossAnatomy:birnlex_1160
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0001872
name: parietal lobe
alt_id: UBERON:FMA_61826-MA_0000916
def: "Parietal lobe is the one of five lobes of the cerebral hemisphere which occupies the dorsal-posterior portion of the hemisphere. It is bounded by the central sulcus on its anterior border and and by the longitudinal cerebral fissure on its medial border. Posteriorly it shares an arbitrary border with the occipital lobe." [Wikipedia:Parietal_lobe]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Parietal cortex" EXACT []
synonym: "parietal cortex" EXACT []
synonym: "Parietal lobe" EXACT []
synonym: "Parietal region" EXACT []
synonym: "parietal region" EXACT []
xref: BTO:0001001
xref: EFO:0000914
xref: FMA:61826
xref: GAID:680
xref: MA:0000916
xref: MAT:0000506
xref: ncithesaurus:Parietal_Lobe_of_the_Brain
xref: NIF_GrossAnatomy:birnlex_1148
xref: OpenCyc:Mx4rvg-typwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: adjacent_to UBERON:0001871 ! temporal lobe
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0001873
name: caudate nucleus
alt_id: UBERON:FMA_61833-MA_0000894
def: "Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent." [Wikipedia:Caudate_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Caudate nucleus" EXACT []
synonym: "Caudatus" EXACT []
synonym: "caudatus" EXACT []
xref: BTO:0000211
xref: EFO:0000907
xref: FMA:61833
xref: GAID:670
xref: MA:0000894
xref: MAT:0000513
xref: ncithesaurus:Caudate_Nucleus
xref: NIF_GrossAnatomy:birnlex_1373
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0002435 ! striatum
[Term]
id: UBERON:0001874
name: putamen
alt_id: UBERON:FMA_61834-MA_0000895
def: "Nucleus of brain which lies ventral to the caudate nucleus and internal capsule and medial to the external capsule. The putamen and caudate nucleus together form the dorsal striatum. It is also one of the structures that comprises the basal ganglia. Through various pathways, the putamen is connected to the substantia nigra and globus pallidus. The main function of the putamen is to regulate movements and influence various types of learning. It employs dopamine to perform its functions. The putamen also plays a role in degenerative neurological disorders, such as Parkinson's disease." [Wikipedia:Putamen]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Nucleus putamen" EXACT []
synonym: "nucleus putamen" EXACT []
synonym: "Putamen" EXACT []
xref: FMA:61834
xref: GAID:671
xref: HOG:0001456
xref: MA:0000895
xref: ncithesaurus:Putamen
xref: NIF_GrossAnatomy:birnlex_809
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0002435 ! striatum
[Term]
id: UBERON:0001875
name: globus pallidus
alt_id: UBERON:FMA_61835-MA_0000890
def: "Nucleus of brain which is located medially to the putamen and laterally to the internal capsule." [Wikipedia:Globus_pallidus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Globus pallidus" EXACT []
synonym: "Paleostriatum" EXACT []
synonym: "paleostriatum" EXACT []
xref: BTO:0002246
xref: EFO:0000905
xref: FMA:61835
xref: GAID:668
xref: MA:0000890
xref: MAT:0000510
xref: ncithesaurus:Globus_Pallidus
xref: NIF_GrossAnatomy:birnlex_1234
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001876
name: amygdala
alt_id: UBERON:FMA_61841-MA_0000887-MIAA_0000289
def: "Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lobe [FMA]," [Wikipedia:Amygdala]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Amygdala" EXACT []
synonym: "amygdaloid area" RELATED []
synonym: "Amygdaloid body" EXACT []
synonym: "amygdaloid body" EXACT []
synonym: "Amygdaloid complex" EXACT []
synonym: "amygdaloid complex" EXACT []
synonym: "Amygdaloid nuclear complex" EXACT []
synonym: "amygdaloid nuclear complex" EXACT []
synonym: "Amygdaloid nuclear groups" EXACT []
synonym: "amygdaloid nuclear groups" EXACT []
synonym: "Amygdaloid nucleus" EXACT []
synonym: "amygdaloid nucleus" EXACT []
synonym: "Archistriatum" EXACT []
synonym: "archistriatum" EXACT []
xref: BTO:0001042
xref: EFO:0000252
xref: FMA:61841
xref: GAID:616
xref: HOG:0001277
xref: MA:0000887
xref: MAT:0000289
xref: MIAA:0000289
xref: ncithesaurus:Amygdala
xref: NIF_GrossAnatomy:birnlex_1241
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0000349 ! limbic system
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0002420 ! basal ganglia
[Term]
id: UBERON:0001877
name: medial septal nucleus
alt_id: UBERON:FMA_61879-MA_0000935
comment: This class was created automatically from a combination of ontologies
synonym: "Medial parolfactory nucleus" EXACT []
synonym: "medial parolfactory nucleus" EXACT []
synonym: "Medial septal nucleus" EXACT []
xref: FMA:61879
xref: MA:0000935
xref: NIF_GrossAnatomy:birnlex_1668
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001878
name: septofimbrial nucleus
alt_id: UBERON:FMA_61881-MA_0000938
comment: This class was created automatically from a combination of ontologies
synonym: "Scattered nucleus of the septum" EXACT []
synonym: "scattered nucleus of the septum" EXACT []
synonym: "Septofimbrial nucleus" EXACT []
xref: FMA:61881
xref: MA:0000938
xref: NIF_GrossAnatomy:birnlex_730
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001879
name: nucleus of diagonal band
alt_id: UBERON:FMA_61882-MA_0000936
comment: This class was created automatically from a combination of ontologies
synonym: "Diagonal band nucleus" EXACT []
synonym: "diagonal band nucleus" EXACT []
synonym: "Nucleus of diagonal band" EXACT []
synonym: "Nucleus of the diagonal band of Broca" EXACT []
synonym: "nucleus of the diagonal band of broca" EXACT []
synonym: "Olfactory area (Roberts)" EXACT []
synonym: "olfactory area (roberts)" EXACT []
xref: FMA:61882
xref: MA:0000936
xref: NIF_GrossAnatomy:birnlex_719
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001880
name: nucleus of stria terminalis
alt_id: UBERON:FMA_61884-MA_0000925
comment: This class was created automatically from a combination of ontologies
synonym: "Bed nucleus of stria terminalis" EXACT []
synonym: "bed nucleus of stria terminalis" EXACT []
synonym: "Intercalate nucleus of stria terminalis" EXACT []
synonym: "intercalate nucleus of stria terminalis" EXACT []
synonym: "Nuclei of stria terminalis" EXACT []
synonym: "nuclei of stria terminalis" EXACT []
synonym: "Nucleus of stria terminalis" EXACT []
synonym: "Stria terminalis nucleus" EXACT []
synonym: "stria terminalis nucleus" EXACT []
xref: BTO:0002698
xref: EFO:0001971
xref: FMA:61884
xref: MA:0000925
xref: NIF_GrossAnatomy:birnlex_724
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001881
name: island of calleja
alt_id: UBERON:FMA_61888-MA_0000977
def: "." [Wikipedia:Islands_of_Calleja]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Calleja island" EXACT []
synonym: "calleja island" EXACT []
synonym: "Island of Calleja" EXACT []
synonym: "Islands of Calleja" EXACT []
synonym: "islands of Calleja" EXACT []
synonym: "islands of calleja" EXACT []
xref: FMA:61888
xref: GAID:632
xref: MA:0000977
xref: NIF_GrossAnatomy:birnlex_1113
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001883 ! anterior perforated substance
[Term]
id: UBERON:0001882
name: nucleus accumbens
alt_id: UBERON:FMA_61889-MA_0000892
def: "a collection of pleomorphic cells in the caudal part of the anterior horn of the lateral ventricle, in the region of the olfactory tubercle, lying between the head of the caudate nucleus and the anterior perforated substance. It is part of the ventral striatum, a composite structure considered part of the basal ganglia[GO]." [GO:0021768, Wikipedia:Nucleus_accumbens]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Accumbens nucleus" EXACT []
synonym: "accumbens nucleus" EXACT []
synonym: "Colliculus of caudate nucleus" EXACT []
synonym: "colliculus of caudate nucleus" EXACT []
synonym: "Nucleus accumbens" EXACT []
synonym: "Nucleus accumbens septi" EXACT []
synonym: "nucleus accumbens septi" EXACT []
xref: BTO:0001862
xref: EFO:0000906
xref: FMA:61889
xref: GAID:672
xref: MA:0000892
xref: MAT:0000512
xref: ncithesaurus:Accumbens_Nucleus
xref: NIF_GrossAnatomy:birnlex_727
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0002435 ! striatum
[Term]
id: UBERON:0001883
name: anterior perforated substance
alt_id: UBERON:FMA_61891-MA_0000976
def: "Subdivision of telencephalon which is a region on the ventro-medial aspect of the telencephalon penetrated by numerous blood vessels. It is bounded by the optic tract posteriorly and the olfactory trigone anteriorly." [Wikipedia:Anterior_perforated_substance]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anterior perforated area" EXACT []
synonym: "anterior perforated area" EXACT []
synonym: "Anterior perforated space" EXACT []
synonym: "anterior perforated space" EXACT []
synonym: "Anterior perforated substance" EXACT []
synonym: "Olfactory area (Mai)" EXACT []
synonym: "olfactory area (mai)" EXACT []
synonym: "Olfactory tubercle" EXACT []
synonym: "olfactory tubercle" EXACT []
xref: BTO:0001869
xref: FMA:61891
xref: MA:0000976
xref: NIF_GrossAnatomy:birnlex_1096
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001869 ! cerebral hemisphere
[Term]
id: UBERON:0001884
name: phrenic nerve
alt_id: UBERON:FMA_6191-MA_0001170
def: "." [Wikipedia:Phrenic_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Phrenic nerve" EXACT []
xref: BTO:0001063
xref: FMA:6191
xref: GAID:848
xref: HOG:0000728
xref: MA:0001170
xref: ncithesaurus:Phrenic_Nerve
is_a: UBERON:0002003 ! peripheral nerve
is_a: UBERON:0003443 ! implied link automatically realized ! thoracic cavity nerve
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0001885
name: dentate gyrus of hippocampal formation
alt_id: UBERON:FMA_61922-MA_0000190
def: "The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus[GO]." [Wikipedia:Dentate_gyrus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Area dentata" EXACT []
synonym: "area dentata" EXACT []
synonym: "Dentate gyrus" EXACT []
synonym: "dentate gyrus" EXACT []
synonym: "Dentate gyrus of hippocampal formation" EXACT []
synonym: "Fascia dentata" EXACT []
synonym: "fascia dentata" EXACT []
xref: BTO:0002496
xref: EFO:0001366
xref: FMA:61922
xref: GAID:624
xref: MA:0000190
xref: ncithesaurus:Dentate_Gyrus
xref: NIF_GrossAnatomy:birnlex_1178
xref: NIF_GrossAnatomy:birnlex_1191
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0003876 ! implied link automatically realized ! hippocampal region
relationship: part_of UBERON:0001954 ! hippocampus
[Term]
id: UBERON:0001886
name: choroid plexus
alt_id: UBERON:FMA_61934-MA_0000823-ZFA_0001443
def: "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier." [Wikipedia:Choroid_plexus, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "chorioid plexus of cerebral hemisphere" EXACT []
xref: BTO:0000258
xref: EFO:0001915
xref: FMA:61934
xref: GAID:607
xref: MA:0000823
xref: ncithesaurus:Choroid_Plexus
xref: TAO:0001443
xref: ZFA:0001443
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0002300 ! ventricle
[Term]
id: UBERON:0001887
name: internal capsule
alt_id: UBERON:FMA_61950-MA_0002748
def: "Internal capsule is an organ subdivision of the telencephalon which is made up primarily of myelinated axonal neural tissue (white matter). The internal capsule is a major set of fiber bundles lateral to the thalamus and caudate nucleus and medial to the putamen and globus pallidus. It projects dorsally to the white matter underlying the cerebral cortex." [Wikipedia:Internal_capsule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Internal capsule" EXACT []
synonym: "Internal capsule radiations" EXACT []
synonym: "internal capsule radiations" EXACT []
xref: FMA:61950
xref: GAID:685
xref: MA:0002748
xref: ncithesaurus:Internal_Capsule
xref: NIF_GrossAnatomy:birnlex_1659
is_a: UBERON:0002437 ! cerebral white matter
relationship: part_of UBERON:0001869 ! cerebral hemisphere
[Term]
id: UBERON:0001888
name: lateral olfactory stria
alt_id: UBERON:FMA_61971-ZFA_0000229
def: "." [Wikipedia:Lateral_olfactory_stria]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lateral olfactory stria" EXACT []
synonym: "Lateral olfactory tract" EXACT []
synonym: "lateral olfactory tract" EXACT []
xref: FMA:61971
xref: NIF_GrossAnatomy:birnlex_1559
xref: TAO:0000229
xref: ZFA:0000229
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0001889
name: trunk of phrenic nerve
alt_id: UBERON:FMA_6198-MA_0001177
comment: This class was created automatically from a combination of ontologies
synonym: "phrenic nerve trunk" EXACT []
synonym: "Phrenic neural trunk" EXACT []
synonym: "phrenic neural trunk" EXACT []
synonym: "Trunk of phrenic nerve" EXACT []
xref: FMA:6198
xref: MA:0001177
is_a: UBERON:0001147 ! trunk of peripheral nerve
relationship: part_of UBERON:0001884 ! phrenic nerve
[Term]
id: UBERON:0001890
name: forebrain
alt_id: UBERON:FMA_61992-MA_0000170-MIAA_0000105-XAO_0000011-ZFA_0000109
def: "Organ component of neuraxis that has as its parts the telencephalon, diencephalon, lateral ventricles and third ventricle. Examples: There is only one forebrain. // The most anterior region the brain including both the telencephalon and diencephalon. Kimmel et al, 1995." [Wikipedia:Forebrain, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Forebrain" EXACT []
synonym: "prosencephalon" RELATED []
xref: BTO:0000478
xref: EFO:0000909
xref: EHDAA:3470
xref: FMA:61992
xref: HOG:0000383
xref: MA:0000170
xref: MAT:0000105
xref: MIAA:0000105
xref: NIF_GrossAnatomy:birnlex_1509
xref: TAO:0000109
xref: XAO:0000011
xref: ZFA:0000109
is_a: UBERON:0002616 ! regional part of brain
relationship: develops_from UBERON:0003080 ! anterior neural tube
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0001891
name: midbrain
alt_id: UBERON:FMA_61993-MA_0000207-MIAA_0000106-XAO_0000014-ZFA_0000128
def: "Organ component of neuraxis that has as its parts the tectum, cerebral peduncle, midbrain tegmentum and cerebral aqueduct. Examples: There is only one midbrain. [FMA]// The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally. Kimmel et al, 1995." [Wikipedia:Midbrain, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "mesencephalon" RELATED []
synonym: "Midbrain" EXACT []
xref: BTO:0000138
xref: EFO:0000919
xref: EHDAA:3694
xref: FMA:61993
xref: HOG:0000069
xref: MA:0000207
xref: MAT:0000106
xref: MIAA:0000106
xref: NIF_GrossAnatomy:birnlex_1667
xref: TAO:0000128
xref: XAO:0000014
xref: ZFA:0000128
is_a: UBERON:0002616 ! regional part of brain
relationship: develops_from UBERON:0003080 ! anterior neural tube
relationship: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0001892
name: rhombomere
alt_id: UBERON:FMA_61998-MIAA_0000272-ZFA_0001064
def: "A segment of the developing hindbrain[ZFA]" [Wikipedia:Rhombomere, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "future rhombencephalon" RELATED [MIAA:0000272]
synonym: "Hindbrain segment" EXACT []
synonym: "hindbrain segment" RELATED []
synonym: "rhombomere" EXACT []
synonym: "rhombomeres" RELATED []
synonym: "Segment of hindbrain" EXACT []
xref: FMA:61998
xref: HOG:0000672
xref: MAT:0000272
xref: MIAA:0000272
xref: TAO:0001064
xref: ZFA:0001064
is_a: UBERON:0000073 ! regional part of nervous system
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0001893
name: telencephalon
alt_id: UBERON:FMA_6200-FMA_62000-MA_0000183-MIAA_0000421-XAO_0000012-ZFA_0000079
def: "Organ component of neuraxis that has as its parts the cerebral cortex, cerebral white matter, basal ganglia, septum and fornix, as well as subcortical gray and white matter structures. There is only one telencephalon. // The anterior and dorsal forebrain neuromere, includes the olfactory bulb. Kimmel et al, 1995." [Wikipedia:Telencephalon, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cerebrum" RELATED []
synonym: "telencephalic vesicle" RELATED []
synonym: "Telencephalon" EXACT []
synonym: "telencephalon" EXACT []
xref: BTO:0000239
xref: EFO:0000912
xref: FMA:62000
xref: GAID:621
xref: HOG:0000283
xref: MA:0000183
xref: MAT:0000421
xref: MIAA:0000421
xref: NIF_GrossAnatomy:birnlex_1115
xref: TAO:0000079
xref: XAO:0000012
xref: ZFA:0000079
is_a: UBERON:0002780 ! regional part of forebrain
relationship: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0001894
name: diencephalon
alt_id: UBERON:FMA_62001-MA_0000171-MIAA_0000420-XAO_0000013-ZFA_0000101
def: "Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus. There is only one diencephalon. // The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995." [Wikipedia:Diencephalon, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Between brain" EXACT []
synonym: "between brain" EXACT []
synonym: "Diencephalon" EXACT []
synonym: "Interbrain" EXACT []
synonym: "interbrain" EXACT []
synonym: "Mature diencephalon" EXACT []
synonym: "mature diencephalon" EXACT []
xref: BTO:0000342
xref: EFO:0000911
xref: EHDAA:1969
xref: EHDAA:2645
xref: EHDAA:3472
xref: FMA:62001
xref: GAID:618
xref: HOG:0000318
xref: MA:0000171
xref: MAT:0000420
xref: MIAA:0000420
xref: ncithesaurus:Diencephalon
xref: NIF_GrossAnatomy:birnlex_1503
xref: TAO:0000101
xref: XAO:0000013
xref: ZFA:0000101
is_a: UBERON:0002780 ! regional part of forebrain
relationship: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0001895
name: metencephalon
alt_id: UBERON:FMA_62003-MA_0000197
def: "Rostral segment of the hindbrain that has as its parts the pons and the cerebellum." [Wikipedia:Metencephalon]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Epencephalon-2" EXACT []
synonym: "epencephalon-2" EXACT []
synonym: "Metencephalon" EXACT []
xref: BTO:0000673
xref: EHDAA:5498
xref: FMA:62003
xref: GAID:594
xref: HOG:0000741
xref: MA:0000197
xref: NIF_GrossAnatomy:birnlex_965
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0001896
name: medulla oblongata
alt_id: UBERON:FMA_62004-MA_0000206-MIAA_0000111-XAO_0003100-ZFA_0000545
def: "Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures. Examples: There is only one medulla oblongata[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, Wikipedia:Medulla_oblongata]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "brainstem" RELATED []
synonym: "Bulb" EXACT []
synonym: "bulb" EXACT []
synonym: "Medulla oblongata" EXACT []
synonym: "medulla oblonmgata" EXACT []
synonym: "Metepencephalon" EXACT []
synonym: "metepencephalon" EXACT []
xref: BTO:0000041
xref: BTO:0000159
xref: EFO:0000924
xref: EHDAA:7588
xref: FMA:62004
xref: GAID:590
xref: HOG:0000181
xref: MA:0000206
xref: MAT:0000111
xref: MAT:0000367
xref: MIAA:0000111
xref: ncithesaurus:Medulla_Oblongata
xref: NIF_GrossAnatomy:birnlex_957
xref: OpenCyc:Mx4rvVjxSJwpEbGdrcN5Y29ycA
xref: TAO:0000545
xref: XAO:0003100
xref: ZFA:0000545
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0002028 ! hindbrain
relationship: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0001897
name: thalamus
alt_id: UBERON:FMA_62007-MA_0000179-MIAA_0000109-ZFA_0001215
def: "." [Wikipedia:Thalamus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Dorsal thalamus" EXACT []
synonym: "dorsal thalamus" EXACT []
synonym: "Dorsal thalamus (Anthoney)" EXACT []
synonym: "dorsal thalamus (anthoney)" EXACT []
synonym: "future thalamus" BROAD []
synonym: "Thalamus" EXACT []
xref: BTO:0001365
xref: EFO:0000910
xref: FMA:62007
xref: GAID:656
xref: HOG:0000657
xref: MA:0000179
xref: MAT:0000109
xref: MIAA:0000109
xref: ncithesaurus:Thalamus
xref: NIF_GrossAnatomy:birnlex_954
xref: TAO:0001215
xref: ZFA:0001215
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001898
name: hypothalamus
alt_id: UBERON:FMA_62008-MA_0000173-MIAA_0000112-ZFA_0000032
def: "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. [ZFA]. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis).[Wikipedia]." [Wikipedia:Hypothalamus, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hypothalamus" EXACT []
synonym: "Preoptico-hypothalamic area" EXACT []
synonym: "preoptico-hypothalamic area" EXACT []
synonym: "Preoptico-hypothalamic region" EXACT []
synonym: "preoptico-hypothalamic region" EXACT []
xref: BTO:0000614
xref: EFO:0000107
xref: EHDAA:5446
xref: FMA:62008
xref: GAID:460
xref: galen:Hypothalamus
xref: HOG:0000179
xref: MA:0000173
xref: MAT:0000112
xref: MIAA:0000112
xref: ncithesaurus:Hypothalamus
xref: NIF_GrossAnatomy:birnlex_734
xref: TAO:0000032
xref: ZFA:0000032
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0000349 ! limbic system
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001899
name: epithalamus
alt_id: UBERON:FMA_62009-MA_0000172-MIAA_0000422-ZFA_0000509
def: "The epithalamus is the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle[GO]." [Wikipedia:Epithalamus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Epithalamus" EXACT []
xref: BTO:0000175
xref: EFO:0000918
xref: EHDAA:5433
xref: FMA:62009
xref: GAID:455
xref: HOG:0000178
xref: MA:0000172
xref: MAT:0000422
xref: MIAA:0000422
xref: ncithesaurus:Epithalamus
xref: NIF_GrossAnatomy:birnlex_1710
xref: TAO:0000509
xref: ZFA:0000509
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001900
name: subthalamus
alt_id: UBERON:FMA_62010-MA_0000181-ZFA_0000458
def: "Anterior part of the diencephalon that lies between the thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis." [GO:0021539, Wikipedia:Subthalamus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "prethalamus" RELATED []
synonym: "Subthalamic region" EXACT []
synonym: "subthalamic region" EXACT []
synonym: "Subthalamus" EXACT []
synonym: "Ventral thalamus" EXACT []
synonym: "ventral thalamus" EXACT []
xref: FMA:62010
xref: GAID:653
xref: MA:0000181
xref: ncithesaurus:Ventral_Thalamus
xref: NIF_GrossAnatomy:birnlex_708
xref: TAO:0000458
xref: ZFA:0000458
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0001901
name: epithelium of trachea
alt_id: UBERON:0003227
alt_id: UBERON:FMA_62015-MA_0001862
comment: This class was created automatically from a combination of ontologies
synonym: "Epithelium of trachea" EXACT []
synonym: "trachea epithelium" EXACT []
synonym: "Tracheal epithelium" EXACT []
synonym: "tracheal epithelium" EXACT []
xref: BTO:0001389
xref: EHDAA:5007
xref: FMA:62015
xref: HOG:0001045
xref: MA:0001862
xref: ncithesaurus:Tracheal_Epithelium
is_a: UBERON:0000485 ! simple columnar epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001005 ! trachea
relationship: part_of UBERON:0001005 ! trachea
[Term]
id: UBERON:0001902
name: epithelium of small intestine
alt_id: UBERON:FMA_62017-MA_0001553
comment: This class was created automatically from a combination of ontologies
synonym: "Epithelium of small intestine" EXACT []
synonym: "Small intestinal epithelium" EXACT []
synonym: "small intestinal epithelium" EXACT []
synonym: "small intestine epithelium" EXACT []
xref: BTO:0001258
xref: FMA:62017
xref: MA:0001553
xref: ZFA:0005127
is_a: UBERON:0001277 ! intestinal epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002108 ! small intestine
relationship: part_of UBERON:0001204 ! mucosa of small intestine
[Term]
id: UBERON:0001903
name: thalamic reticular nucleus
alt_id: UBERON:FMA_62026-MA_0000876
def: "." [Wikipedia:Thalamic_reticular_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Reticular nuclear group" EXACT []
synonym: "reticular nuclear group" EXACT []
synonym: "Reticular nucleus of thalamus" EXACT []
synonym: "reticular nucleus of thalamus" EXACT []
synonym: "Reticular nucleus of the thalamus" EXACT []
synonym: "reticular nucleus of the thalamus" EXACT []
synonym: "Reticular nucleus-2" EXACT []
synonym: "reticular nucleus-2" EXACT []
synonym: "Reticular thalamic nucleus" EXACT []
synonym: "reticular thalamic nucleus" EXACT []
synonym: "Thalamic reticular nucleus" EXACT []
xref: FMA:62026
xref: MA:0000876
xref: NIF_GrossAnatomy:birnlex_1721
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
relationship: part_of UBERON:0001900 ! subthalamus
[Term]
id: UBERON:0001904
name: habenula
alt_id: UBERON:FMA_62032-MA_0000830-ZFA_0000213
def: "Habenula is an segment of the epithalamus that has as its parts the lateral and medial habenular nuclei and the habenular commissure. // The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus." [Wikipedia:Habenula, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Habenula" EXACT []
synonym: "habenulae" RELATED []
synonym: "Habenular nuclei" EXACT []
synonym: "habenular nuclei" EXACT []
synonym: "habenular nucleus" RELATED []
xref: BTO:0003684
xref: FMA:62032
xref: GAID:619
xref: MA:0000830
xref: NIF_GrossAnatomy:birnlex_1611
xref: TAO:0000213
xref: ZFA:0000213
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus
relationship: part_of UBERON:0001899 ! epithalamus
[Term]
id: UBERON:0001905
name: pineal body
alt_id: UBERON:FMA_62033-MA_0000175-XAO_0000160
def: "Pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus." [Wikipedia:Pineal_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "corpus pineale" RELATED []
synonym: "epiphysis" RELATED [ZFA:0000019]
synonym: "epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri]
synonym: "Pineal body" EXACT []
synonym: "Pineal gland" EXACT []
synonym: "pineal gland" EXACT []
xref: BTO:0001067
xref: EFO:0000865
xref: EHDAA:7523
xref: FMA:62033
xref: GAID:453
xref: HOG:0000051
xref: MA:0000175
xref: MAT:0000448
xref: ncithesaurus:Pineal_Gland
xref: NIF_GrossAnatomy:birnlex_1184
xref: OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA
xref: XAO:0000160
xref: ZFA:0000019
is_a: UBERON:0002530 ! gland
is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003296 ! implied link automatically realized ! gland of diencephalon
relationship: part_of UBERON:0000949 ! endocrine system
relationship: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001899 ! epithalamus
[Term]
id: UBERON:0001906
name: subthalamic nucleus
alt_id: UBERON:FMA_62035-MA_0000877
def: "The subthalamic nucleus is the lens-shaped nucleus located in the ventral part of the subthalamus on the inner aspect of the internal capsule that is concerned with the integration of somatic motor function[GO]." [Wikipedia:Subthalamic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Body of Forel" EXACT []
synonym: "body of forel" EXACT []
synonym: "Body of Luys" EXACT []
synonym: "body of luys" EXACT []
synonym: "Nucleus of Corpus Luysii" EXACT []
synonym: "nucleus of corpus luysii" EXACT []
synonym: "Nucleus of Luys" EXACT []
synonym: "nucleus of luys" EXACT []
synonym: "Subthalamic nucleus" EXACT []
synonym: "Subthalamic nucleus (of Luys)" EXACT []
synonym: "subthalamic nucleus (of luys)" EXACT []
xref: BTO:0002252
xref: EFO:0001392
xref: FMA:62035
xref: GAID:655
xref: MA:0000877
xref: ncithesaurus:Subthalamic_Nucleus
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
relationship: part_of UBERON:0001900 ! subthalamus
[Term]
id: UBERON:0001907
name: zona incerta
alt_id: UBERON:FMA_62038-MA_0000878
def: "." [Wikipedia:Zona_incerta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Zona incerta" EXACT []
xref: BTO:0003146
xref: FMA:62038
xref: MA:0000878
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
relationship: part_of UBERON:0001900 ! subthalamus
[Term]
id: UBERON:0001908
name: optic tract
alt_id: UBERON:FMA_62046-ZFA_0000252
def: "Nerve trunk which is continuous with the optic chiasm and the lateral geniculate nucleus. // Axon tract which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm." [Wikipedia:Optic_tract, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Optic lemniscus" EXACT []
synonym: "optic lemniscus" EXACT []
synonym: "Optic tract" EXACT []
xref: FMA:62046
xref: HOG:0001164
xref: MA:0001099
xref: ncithesaurus:Optic_Tract
xref: NIF_GrossAnatomy:birnlex_1684
xref: TAO:0000252
xref: ZFA:0000252
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0001018 ! implied link automatically realized ! axon tract
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
intersection_of: UBERON:0001018 ! axon tract
intersection_of: part_of UBERON:0000970 ! eye
relationship: continuous_with UBERON:0000959 ! optic chiasma
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001909
name: habenular commissure
alt_id: UBERON:FMA_62048-ZFA_0000359
def: "." [Wikipedia:Habenular_commissure]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Habenular commissure" EXACT []
xref: FMA:62048
xref: NIF_GrossAnatomy:birnlex_1609
xref: TAO:0000359
xref: ZFA:0000359
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus
relationship: part_of UBERON:0001904 ! habenula
[Term]
id: UBERON:0001910
name: medial forebrain bundle
alt_id: UBERON:FMA_62064-ZFA_0005111
def: "." [Wikipedia:Medial_forebrain_bundle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Medial forebrain bundle" EXACT []
synonym: "Medial forebrain fasciculus" EXACT []
synonym: "medial forebrain fasciculus" EXACT []
synonym: "Telencephalic medial fasciculus" EXACT []
synonym: "telencephalic medial fasciculus" EXACT []
xref: FMA:62064
xref: GAID:736
xref: ncithesaurus:Medial_Forebrain_Bundle
xref: NIF_GrossAnatomy:birnlex_908
xref: TAO:0005111
xref: ZFA:0005111
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0001911
name: lactiferous gland
alt_id: UBERON:FMA_62088-MA_0000145-MIAA_0000073-Mammary
def: "Lobular organ which consist of a lactiferous duct tree and the set of lactiferous acini that are connected to duct tree. Examples: There are variable numbers of lactiferous duct trees." [Wikipedia:Mammary_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lactiferous gland" EXACT []
synonym: "Lobe of breast" EXACT []
synonym: "lobe of breast" EXACT []
synonym: "Lobe of mammary gland" EXACT []
synonym: "lobe of mammary gland" EXACT []
synonym: "mammary gland" EXACT []
xref: BTO:0000817
xref: EFO:0000854
xref: EHDAA:6524
xref: FMA:62088
xref: HOG:0000398
xref: MA:0000145
xref: MAT:0000073
xref: MIAA:0000073
xref: ncithesaurus:Mammary_Gland
xref: NULL:Mammary
xref: OpenCyc:Mx4rvVjVq5wpEbGdrcN5Y29ycA
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0001912
name: lobule of lactiferous gland
alt_id: UBERON:FMA_62090-MA_0000793
def: "Organ component of the mammary gland which consists of an aggregate of mammary alveoli that communicate with a lobular lactiferous duct." []
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Acinus of mammary gland" EXACT []
synonym: "acinus of mammary gland" EXACT []
synonym: "Lactiferous acinus" EXACT []
synonym: "lactiferous acinus" EXACT []
synonym: "Lactiferous gland lobule" EXACT []
synonym: "lactiferous gland lobule" EXACT []
synonym: "Lactiferous lobule" EXACT []
synonym: "lactiferous lobule" EXACT []
synonym: "Lobule of lactiferous gland" EXACT []
synonym: "Lobule of mammary gland" EXACT []
synonym: "lobule of mammary gland" EXACT []
synonym: "Mammary acinus" EXACT []
synonym: "mammary acinus" EXACT []
synonym: "mammary gland lobule" EXACT []
xref: FMA:62090
xref: MA:0000793
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001911 ! lactiferous gland
[Term]
id: UBERON:0001913
name: milk
alt_id: UBERON:FMA_62100-MA_0002552-MIAA_0000056
def: "Secretion produced by the mammary gland." [Wikipedia:Breast_milk]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "mammary gland milk" EXACT []
synonym: "Milk" EXACT []
xref: BTO:0000868
xref: ENVO:02000031
xref: FMA:62100
xref: GAID:1230
xref: HOG:0001263
xref: MA:0002552
xref: MAT:0000056
xref: MIAA:0000056
xref: ncithesaurus:Milk
xref: OpenCyc:Mx4rvVjGZJwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001914
name: colostrum
alt_id: UBERON:FMA_62101-MA_0002551
def: "." [Wikipedia:Colostrum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Colostrum" EXACT []
xref: BTO:0000276
xref: FMA:62101
xref: GAID:1159
xref: MA:0002551
xref: ncithesaurus:Colostrum
is_a: UBERON:0001913 ! milk
[Term]
id: UBERON:0001915
name: endothelium of capillary
alt_id: UBERON:FMA_62114-MA_0000711
comment: This class was created automatically from a combination of ontologies
synonym: "Capillary endothelium" EXACT []
synonym: "capillary endothelium" EXACT []
synonym: "Endothelium of capillary" EXACT []
xref: FMA:62114
xref: MA:0000711
xref: ncithesaurus:Capillary_Endothelium
is_a: UBERON:0001986 ! endothelium
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001982 ! capillary
relationship: part_of UBERON:0001982 ! capillary
[Term]
id: UBERON:0001916
name: endothelium of arteriole
alt_id: UBERON:FMA_62115-MA_0000705
comment: This class was created automatically from a combination of ontologies
synonym: "Arteriole endothelium" EXACT []
synonym: "arteriole endothelium" EXACT []
synonym: "Endothelium of arteriole" EXACT []
xref: FMA:62115
xref: MA:0000705
xref: ncithesaurus:Arteriole_Endothelium
is_a: UBERON:0001986 ! endothelium
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001980 ! arteriole
relationship: part_of UBERON:0001980 ! arteriole
[Term]
id: UBERON:0001917
name: endothelium of artery
alt_id: UBERON:FMA_62116-MA_0000707-XAO_0000357
comment: This class was created automatically from a combination of ontologies
synonym: "Arterial endothelium" EXACT []
synonym: "arterial endothelium" EXACT []
synonym: "artery endothelium" EXACT []
synonym: "Endothelium of artery" EXACT []
xref: FMA:62116
xref: HOG:0001215
xref: MA:0000707
xref: ncithesaurus:Artery_Endothelium
xref: XAO:0000357
is_a: UBERON:0001986 ! endothelium
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001637 ! artery
relationship: part_of UBERON:0001637 ! artery
[Term]
id: UBERON:0001918
name: endothelium of venule
alt_id: UBERON:FMA_62117-MA_0000716
comment: This class was created automatically from a combination of ontologies
synonym: "Endothelium of venule" EXACT []
synonym: "Venule endothelium" EXACT []
synonym: "venule endothelium" EXACT []
xref: FMA:62117
xref: MA:0000716
xref: ncithesaurus:Venule_Endothelium
is_a: UBERON:0001986 ! endothelium
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001979 ! venule
relationship: part_of UBERON:0001979 ! venule
[Term]
id: UBERON:0001919
name: endothelium of vein
alt_id: UBERON:FMA_62118-MA_0000712
comment: This class was created automatically from a combination of ontologies
synonym: "Endothelium of vein" EXACT []
synonym: "vein endothelium" EXACT []
synonym: "Venous endothelium" EXACT []
synonym: "venous endothelium" EXACT []
xref: FMA:62118
xref: HOG:0001216
xref: MA:0000712
xref: ncithesaurus:Vein_Endothelium
is_a: UBERON:0001986 ! endothelium
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001638 ! vein
[Term]
id: UBERON:0001920
name: paraventricular nucleus of thalamus
alt_id: UBERON:FMA_62152-MA_0000866
def: "." [Wikipedia:Paraventricular_nuclei]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Paraventricular gray" EXACT []
synonym: "paraventricular gray" EXACT []
synonym: "Paraventricular nuclei" EXACT []
synonym: "paraventricular nuclei" EXACT []
synonym: "Paraventricular nuclei of thalamus" EXACT []
synonym: "paraventricular nuclei of thalamus" EXACT []
synonym: "Paraventricular nucleus of thalamus" EXACT []
synonym: "Paraventricular thalamic nucleus" EXACT []
synonym: "paraventricular thalamic nucleus" EXACT []
xref: FMA:62152
xref: MA:0000866
xref: NIF_GrossAnatomy:birnlex_764
is_a: UBERON:0001930 ! paraventricular nucleus of hypothalamus
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
intersection_of: UBERON:0001930 ! paraventricular nucleus of hypothalamus
intersection_of: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0001921
name: reuniens nucleus
alt_id: UBERON:FMA_62153-MA_0000865
comment: This class was created automatically from a combination of ontologies
synonym: "Medioventral nucleus" EXACT []
synonym: "medioventral nucleus" EXACT []
synonym: "nucleus reuniens" EXACT []
synonym: "Reuniens nucleus" EXACT []
synonym: "Reuniens thalamic nucleus" EXACT []
synonym: "reuniens thalamic nucleus" EXACT []
xref: BTO:0002459
xref: FMA:62153
xref: MA:0000865
xref: NIF_GrossAnatomy:birnlex_770
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001922
name: parafascicular nucleus
alt_id: UBERON:FMA_62166-MA_0000874
comment: This class was created automatically from a combination of ontologies
synonym: "Parafascicular nucleus" EXACT []
synonym: "Parafascicular nucleus of thalamus" EXACT []
synonym: "parafascicular nucleus of thalamus" EXACT []
synonym: "Parafascicular thalamic nucleus" EXACT []
synonym: "parafascicular thalamic nucleus" EXACT []
xref: FMA:62166
xref: MA:0000874
xref: NIF_GrossAnatomy:birnlex_952
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001923
name: central medial nucleus
alt_id: UBERON:FMA_62171-MA_0000872
comment: This class was created automatically from a combination of ontologies
synonym: "Central medial nucleus" EXACT []
synonym: "Central medial nucleus of thalamus" EXACT []
synonym: "central medial nucleus of thalamus" EXACT []
synonym: "Central medial thalamic nucleus" EXACT []
synonym: "central medial thalamic nucleus" EXACT []
xref: BTO:0003753
xref: FMA:62171
xref: MA:0000872
xref: NIF_GrossAnatomy:birnlex_971
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001924
name: paracentral nucleus
alt_id: UBERON:FMA_62172-MA_0000873
comment: This class was created automatically from a combination of ontologies
synonym: "Paracentral nucleus" EXACT []
synonym: "Paracentral nucleus of thalamus" EXACT []
synonym: "paracentral nucleus of thalamus" EXACT []
synonym: "Paracentral thalamic nucleus" EXACT []
synonym: "paracentral thalamic nucleus" EXACT []
xref: FMA:62172
xref: MA:0000873
xref: NIF_GrossAnatomy:birnlex_981
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001925
name: ventral lateral nucleus
alt_id: UBERON:FMA_62186-ZFA_0000306
def: "." [Wikipedia:Ventral_lateral_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lateral ventral nucleus of thalamus" EXACT []
synonym: "lateral ventral nucleus of thalamus" EXACT []
synonym: "Ventral lateral complex of thalamus" EXACT []
synonym: "ventral lateral complex of thalamus" EXACT []
synonym: "Ventral lateral nucleus" EXACT []
synonym: "Ventral lateral nucleus of thalamus" EXACT []
synonym: "ventral lateral nucleus of thalamus" EXACT []
synonym: "Ventral lateral thalamic nuclei" EXACT []
synonym: "ventral lateral thalamic nuclei" EXACT []
synonym: "Ventrolateral thalamic nucleus" EXACT []
synonym: "ventrolateral thalamic nucleus" EXACT []
xref: BTO:0002463
xref: FMA:62186
xref: NIF_GrossAnatomy:birnlex_1237
xref: TAO:0000306
xref: ZFA:0000306
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
relationship: part_of UBERON:0001900 ! subthalamus
[Term]
id: UBERON:0001926
name: lateral geniculate body
alt_id: UBERON:FMA_62209-MA_0000869
def: "The lateral geniculate nucleus is the primary processor of visual information received from the retina[GO]." [Wikipedia:Lateral_geniculate_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lateral geniculate body" EXACT []
synonym: "Lateral geniculate complex" EXACT []
synonym: "lateral geniculate complex" EXACT []
synonym: "Lateral geniculate nucleus" EXACT []
synonym: "lateral geniculate nucleus" EXACT []
xref: EFO:0001988
xref: FMA:62209
xref: MA:0000869
xref: NIF_GrossAnatomy:birnlex_1662
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0001927
name: medial geniculate body
alt_id: UBERON:FMA_62211-MA_0000870
def: "." [Wikipedia:Medial_geniculate_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Medial geniculate body" EXACT []
synonym: "Medial geniculate complex" EXACT []
synonym: "medial geniculate complex" EXACT []
synonym: "Medial geniculate nuclei" EXACT []
synonym: "medial geniculate nuclei" EXACT []
synonym: "Medial geniculate nucleus" EXACT []
synonym: "medial geniculate nucleus" EXACT []
xref: BTO:0002674
xref: EFO:0001968
xref: FMA:62211
xref: MA:0000870
xref: NIF_GrossAnatomy:birnlex_1670
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0001928
name: preoptic area
alt_id: UBERON:FMA_62313-ZFA_0000470
def: "Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus. See Figure 7, Atlas of Early Zebrafish Brain Development." [Wikipedia:Preoptic_area, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "area praeoptica" RELATED []
synonym: "area preoptica" RELATED []
synonym: "Preoptic area" EXACT []
synonym: "Preoptic nuclei" EXACT []
synonym: "preoptic nuclei" EXACT []
synonym: "preoptic region" RELATED []
synonym: "Preoptic region of hypothalamus" EXACT []
synonym: "preoptic region of hypothalamus" EXACT []
xref: BTO:0001796
xref: EFO:0002523
xref: FMA:62313
xref: GAID:644
xref: NIF_GrossAnatomy:birnlex_1706
xref: TAO:0000470
xref: ZFA:0000470
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001929
name: supraoptic nucleus
alt_id: UBERON:FMA_62317-MA_0000849
def: "." [Wikipedia:Supraoptic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Supra-optic nucleus" EXACT []
synonym: "supra-optic nucleus" EXACT []
synonym: "Supraoptic nucleus" EXACT []
synonym: "Supraoptic nucleus of hypothalamus" EXACT []
synonym: "supraoptic nucleus of hypothalamus" EXACT []
xref: BTO:0002697
xref: EFO:0002476
xref: FMA:62317
xref: GAID:646
xref: MA:0000849
xref: NIF_GrossAnatomy:birnlex_1411
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus
[Term]
id: UBERON:0001930
name: paraventricular nucleus of hypothalamus
alt_id: UBERON:FMA_62320-MA_0000848
def: "." [Wikipedia:Paraventricular_nucleus_of_hypothalamus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Filiform nucleus" EXACT []
synonym: "filiform nucleus" EXACT []
synonym: "Paraventricular hypothalamic nucleus" EXACT []
synonym: "paraventricular hypothalamic nucleus" EXACT []
synonym: "Paraventricular nucleus" EXACT []
synonym: "paraventricular nucleus" EXACT []
synonym: "Paraventricular nucleus of hypothalamus" EXACT []
xref: BTO:0002476
xref: EFO:0002469
xref: FMA:62320
xref: GAID:643
xref: MA:0000848
xref: NIF_GrossAnatomy:birnlex_1407
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus
[Term]
id: UBERON:0001931
name: lateral preoptic nucleus
alt_id: UBERON:FMA_62326-MA_0000835
def: "." [Wikipedia:Lateral_preoptic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lateral preoptic area" EXACT []
synonym: "lateral preoptic area" EXACT []
synonym: "Lateral preoptic hypothalamic nucleus" EXACT []
synonym: "lateral preoptic hypothalamic nucleus" EXACT []
synonym: "Lateral preoptic nucleus" EXACT []
xref: FMA:62326
xref: MA:0000835
xref: NIF_GrossAnatomy:birnlex_1722
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus
[Term]
id: UBERON:0001932
name: arcuate nucleus of hypothalamus
alt_id: UBERON:FMA_62329-MA_0000847
def: "." [Wikipedia:Arcuate_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Arcuate hypothalamic nucleus" EXACT []
synonym: "arcuate hypothalamic nucleus" EXACT []
synonym: "Arcuate nucleus" EXACT []
synonym: "arcuate nucleus" EXACT []
synonym: "Arcuate nucleus of hypothalamus" EXACT []
synonym: "Arcuate nucleus-2" EXACT []
synonym: "arcuate nucleus-2" EXACT []
synonym: "Arcuate periventricular nucleus" EXACT []
synonym: "arcuate periventricular nucleus" EXACT []
synonym: "Infundibular hypothalamic nucleus" EXACT []
synonym: "infundibular hypothalamic nucleus" EXACT []
synonym: "Infundibular nucleus" EXACT []
synonym: "infundibular nucleus" EXACT []
synonym: "Infundibular periventricular nucleus" EXACT []
synonym: "infundibular periventricular nucleus" EXACT []
xref: BTO:0002473
xref: FMA:62329
xref: GAID:647
xref: MA:0000847
xref: ncithesaurus:Arcuate_Nucleus
xref: NIF_GrossAnatomy:birnlex_1638
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus
[Term]
id: UBERON:0001933
name: retrochiasmatic area
alt_id: UBERON:FMA_62330-MA_0000841
comment: This class was created automatically from a combination of ontologies
synonym: "Retrochiasmatic area" EXACT []
synonym: "Retrochiasmatic region" EXACT []
synonym: "retrochiasmatic region" EXACT []
xref: FMA:62330
xref: MA:0000841
xref: NIF_GrossAnatomy:birnlex_1569
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0002272 ! medial zone of hypothalamus
[Term]
id: UBERON:0001934
name: dorsomedial nucleus of hypothalamus
alt_id: UBERON:FMA_62331-MA_0000838
def: "." [Wikipedia:Dorsomedial_hypothalamic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Dorsomedial hypothalamic nucleus" EXACT []
synonym: "dorsomedial hypothalamic nucleus" EXACT []
synonym: "Dorsomedial nucleus of dorsal hypothalamus" EXACT []
synonym: "dorsomedial nucleus of dorsal hypothalamus" EXACT []
synonym: "Dorsomedial nucleus of hypothalamus" EXACT []
synonym: "Dorsomedial nucleus of intermediate hypothalamus" EXACT []
synonym: "dorsomedial nucleus of intermediate hypothalamus" EXACT []
xref: BTO:0002474
xref: FMA:62331
xref: GAID:648
xref: MA:0000838
xref: NIF_GrossAnatomy:birnlex_1558
is_a: UBERON:0002739 ! implied link automatically realized ! medial dorsal nucleus
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
intersection_of: UBERON:0002739 ! medial dorsal nucleus
intersection_of: part_of UBERON:0001898 ! hypothalamus
relationship: part_of UBERON:0002272 ! medial zone of hypothalamus
[Term]
id: UBERON:0001935
name: ventromedial nucleus of hypothalamus
alt_id: UBERON:FMA_62332-MA_0000845
def: "." [Wikipedia:Ventromedial_hypothalamic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ventromedial hypothalamic nucleus" EXACT []
synonym: "ventromedial hypothalamic nucleus" EXACT []
synonym: "Ventromedial nucleus of hypothalamus" EXACT []
xref: BTO:0002472
xref: FMA:62332
xref: GAID:650
xref: MA:0000845
xref: NIF_GrossAnatomy:birnlex_1572
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001936
name: tuberomammillary nucleus
alt_id: UBERON:FMA_62335-MA_0000853
def: "." [Wikipedia:Tuberomammillary_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Caudal magnocellular nucleus" EXACT []
synonym: "caudal magnocellular nucleus" EXACT []
synonym: "Mammilloinfundibular nucleus" EXACT []
synonym: "mammilloinfundibular nucleus" EXACT []
synonym: "Tuberomammillary hypothalamic nucleus" EXACT []
synonym: "tuberomammillary hypothalamic nucleus" EXACT []
synonym: "Tuberomammillary nucleus" EXACT []
xref: FMA:62335
xref: MA:0000853
xref: NIF_GrossAnatomy:birnlex_1271
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0002206 ! mammillary body
[Term]
id: UBERON:0001937
name: lateral hypothalamic nucleus
alt_id: UBERON:FMA_62337-ZFA_0000227
def: "." [Wikipedia:Lateral_hypothalamic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lateral hypothalamic nucleus" EXACT []
xref: FMA:62337
xref: NIF_GrossAnatomy:birnlex_1199
xref: TAO:0000227
xref: ZFA:0000227
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0001938
name: lateral mammillary nucleus
alt_id: UBERON:FMA_62341-MA_0000850
comment: This class was created automatically from a combination of ontologies
synonym: "Lateral mammillary hypothalamic nucleus" EXACT []
synonym: "lateral mammillary hypothalamic nucleus" EXACT []
synonym: "Lateral mammillary nucleus" EXACT []
synonym: "Lateral nucleus of mammillary body" EXACT []
synonym: "lateral nucleus of mammillary body" EXACT []
xref: FMA:62341
xref: MA:0000850
xref: NIF_GrossAnatomy:birnlex_1460
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0002206 ! mammillary body
[Term]
id: UBERON:0001939
name: medial mammillary nucleus
alt_id: UBERON:FMA_62342-MA_0000851
comment: This class was created automatically from a combination of ontologies
synonym: "Internal mammillary nucleus" EXACT []
synonym: "internal mammillary nucleus" EXACT []
synonym: "Medial mammillary nucleus" EXACT []
synonym: "Medial nucleus of mammillary body" EXACT []
synonym: "medial nucleus of mammillary body" EXACT []
xref: FMA:62342
xref: MA:0000851
xref: NIF_GrossAnatomy:birnlex_1299
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0002206 ! mammillary body
[Term]
id: UBERON:0001940
name: supramammillary nucleus
alt_id: UBERON:FMA_62347-MA_0000852
comment: This class was created automatically from a combination of ontologies
synonym: "Supramammillary nucleus" EXACT []
xref: FMA:62347
xref: MA:0000852
xref: NIF_GrossAnatomy:birnlex_1479
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0002206 ! mammillary body
[Term]
id: UBERON:0001941
name: lateral habenular nucleus
alt_id: UBERON:FMA_62372-MA_0000831
comment: This class was created automatically from a combination of ontologies
synonym: "Lateral habenula" EXACT []
synonym: "lateral habenula" EXACT []
synonym: "Lateral habenular nucleus" EXACT []
xref: BTO:0002699
xref: FMA:62372
xref: MA:0000831
xref: NIF_GrossAnatomy:birnlex_1438
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus
relationship: part_of UBERON:0001904 ! habenula
[Term]
id: UBERON:0001942
name: medial habenular nucleus
alt_id: UBERON:FMA_62373-MA_0000832
comment: This class was created automatically from a combination of ontologies
synonym: "Medial habenula" EXACT []
synonym: "medial habenula" EXACT []
synonym: "Medial habenular nucleus" EXACT []
xref: BTO:0003686
xref: FMA:62373
xref: MA:0000832
xref: NIF_GrossAnatomy:birnlex_1431
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus
relationship: part_of UBERON:0001904 ! habenula
[Term]
id: UBERON:0001943
name: midbrain tegmentum
alt_id: UBERON:FMA_62393-MA_0000212-ZFA_0001354
def: "Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle." [Wikipedia:Midbrain_tegmentum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Mesencephalic tegmentum" EXACT []
synonym: "mesencephalic tegmentum" EXACT []
synonym: "Midbrain tegmentum" EXACT []
synonym: "tegmentum" EXACT []
synonym: "Tegmentum of midbrain" EXACT []
synonym: "tegmentum of midbrain" EXACT []
xref: BTO:0003388
xref: EFO:0000921
xref: FMA:62393
xref: HOG:0001367
xref: MA:0000212
xref: MAT:0000452
xref: NIF_GrossAnatomy:birnlex_1031
xref: NIF_GrossAnatomy:birnlex_1200
xref: TAO:0001354
xref: ZFA:0000160
xref: ZFA:0001354
is_a: UBERON:0002950 ! regional part of midbrain
relationship: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0001944
name: pretectal region
alt_id: UBERON:FMA_62402-MA_0001062-ZFA_0000418
def: "." [Wikipedia:Pretectum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pretectal area" EXACT []
synonym: "pretectal area" EXACT []
synonym: "Pretectal nuclei" EXACT []
synonym: "pretectal nuclei" EXACT []
synonym: "Pretectal region" EXACT []
synonym: "Pretectum" EXACT []
synonym: "pretectum" EXACT []
xref: FMA:62402
xref: MA:0001062
xref: NIF_GrossAnatomy:birnlex_703
xref: TAO:0000418
xref: ZFA:0000418
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
relationship: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0001945
name: superior colliculus
alt_id: UBERON:FMA_62403-MA_0001068-ZFA_0000445
def: "The roof of the midbrain, morphologically visible by the end of the segmentation period. Kimmel et al, 1995." [Wikipedia:Superior_colliculus, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anterior colliculus" EXACT []
synonym: "anterior colliculus" EXACT []
synonym: "Anterior corpus quadrigeminum" EXACT []
synonym: "anterior corpus quadrigeminum" EXACT []
synonym: "Cranial colliculus" EXACT []
synonym: "cranial colliculus" EXACT []
synonym: "dorsal midbrain" RELATED []
synonym: "Optic tectum" EXACT []
synonym: "optic tectum" EXACT []
synonym: "Superior colliculus" EXACT []
synonym: "tectal lobe" RELATED []
synonym: "tectum" RELATED []
synonym: "tectum opticum" RELATED []
xref: EFO:0002474
xref: FMA:62403
xref: GAID:576
xref: MA:0001068
xref: NIF_GrossAnatomy:birnlex_1040
xref: TAO:0000445
xref: ZFA:0000445
is_a: UBERON:0002966 ! regional part of midbrain tectum
relationship: part_of UBERON:0002259 ! tectal plate
[Term]
id: UBERON:0001946
name: inferior colliculus
alt_id: UBERON:FMA_62404-MA_0001067
def: "." [Wikipedia:Inferior_colliculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Caudal colliculus" EXACT []
synonym: "caudal colliculus" EXACT []
synonym: "Inferior colliculus" EXACT []
synonym: "Posterior colliculus" EXACT []
synonym: "posterior colliculus" EXACT []
synonym: "Posterior corpus quadrigeminum" EXACT []
synonym: "posterior corpus quadrigeminum" EXACT []
xref: EFO:0002465
xref: FMA:62404
xref: GAID:575
xref: MA:0001067
xref: NIF_GrossAnatomy:birnlex_806
is_a: UBERON:0002966 ! regional part of midbrain tectum
relationship: part_of UBERON:0002259 ! tectal plate
[Term]
id: UBERON:0001947
name: red nucleus
alt_id: UBERON:FMA_62407-MA_0001063
def: "." [Wikipedia:Red_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Red nucleus" EXACT []
xref: FMA:62407
xref: GAID:586
xref: MA:0001063
xref: NIF_GrossAnatomy:birnlex_1478
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0001948
name: regional part of spinal cord
alt_id: UBERON:FMA_62420-ZFA_0001332
def: "." [Wikipedia:Spinal_cord_segment]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Segment of spinal cord" EXACT []
synonym: "Spinal cord segment" EXACT []
synonym: "spinal cord segment" RELATED []
synonym: "spinal neuromere" EXACT []
synonym: "spinal neuromeres" RELATED []
xref: FMA:62420
xref: TAO:0001332
xref: ZFA:0001332
is_a: UBERON:0000073 ! regional part of nervous system
[Term]
id: UBERON:0001949
name: gingival epithelium
alt_id: UBERON:FMA_62423-MA_0001576
comment: This class was created automatically from a combination of ontologies
synonym: "Epithelium of gingiva" EXACT []
synonym: "epithelium of gingiva" EXACT []
synonym: "Gingival epithelium" EXACT []
xref: FMA:62423
xref: MA:0001576
xref: ncithesaurus:Gingival_Epithelium
is_a: UBERON:0000486 ! multilaminar epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001828 ! gingiva
relationship: part_of UBERON:0001828 ! gingiva
[Term]
id: UBERON:0001950
name: neocortex
alt_id: UBERON:FMA_62429-MA_0002754
def: "." [Wikipedia:Neocortex]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cerebral cortex" RELATED []
synonym: "Cerebral neocortex" EXACT []
synonym: "cerebral neocortex" EXACT []
synonym: "Homogenetic cortex" EXACT []
synonym: "homogenetic cortex" EXACT []
synonym: "Isocortex (sensu lato)" EXACT []
synonym: "isocortex (sensu lato)" EXACT []
synonym: "Neocortex" EXACT []
synonym: "Neopallial cortex" EXACT []
synonym: "neopallial cortex" EXACT []
synonym: "Neopallium" EXACT []
synonym: "neopallium" EXACT []
xref: BTO:0000920
xref: FMA:62429
xref: GAID:677
xref: MA:0002754
xref: NIF_GrossAnatomy:birnlex_2547
is_a: UBERON:0002619 ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0001951
name: epithelium of nasopharynx
alt_id: UBERON:0003237
alt_id: UBERON:FMA_62452-MA_0001865
comment: This class was created automatically from a combination of ontologies
synonym: "Epithelium of nasopharynx" EXACT []
synonym: "Nasopharynx epithelium" EXACT []
synonym: "nasopharynx epithelium" EXACT []
xref: EHDAA:7090
xref: FMA:62452
xref: HOG:0001038
xref: MA:0001865
xref: ncithesaurus:Nasopharynx_Epithelium
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0003351 ! implied link automatically realized ! epithelium of pharynx
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001728 ! nasopharynx
relationship: part_of UBERON:0001728 ! nasopharynx
[Term]
id: UBERON:0001952
name: epithelium of oropharynx
alt_id: UBERON:FMA_62453-MA_0001605
comment: This class was created automatically from a combination of ontologies
synonym: "Epithelium of oropharynx" EXACT []
synonym: "Oropharynx epithelium" EXACT []
synonym: "oropharynx epithelium" EXACT []
xref: FMA:62453
xref: MA:0001605
xref: ncithesaurus:Oropharynx_Epithelium
is_a: UBERON:0000486 ! multilaminar epithelium
is_a: UBERON:0003351 ! implied link automatically realized ! epithelium of pharynx
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001729 ! oropharynx
relationship: part_of UBERON:0001729 ! oropharynx
[Term]
id: UBERON:0001953
name: presubiculum
alt_id: UBERON:FMA_62486-MA_0000923
comment: This class was created automatically from a combination of ontologies
synonym: "Area 27 of Brodmann" EXACT []
synonym: "area 27 of brodmann" EXACT []
synonym: "Presubiculum" EXACT []
xref: FMA:62486
xref: MA:0000923
xref: NIF_GrossAnatomy:birnlex_1108
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0001954
name: hippocampus
alt_id: UBERON:FMA_62493-MA_0000191-MIAA_0000114
def: "The hippocampus is a major component of the brains of humans and other mammals. It belongs to the limbic system and plays major roles in long term memory and spatial navigation. Like the cerebral cortex, it is a paired structure, with mirror-image halves in the left and right sides of the brain. The hippocampus is closely associated with the cerebral cortex, and in primates is located in the medial temporal lobe, underneath the cortical surface. It is shaped like a curved tube, which in humans is convoluted in a way that reminded early anatomists of a seahorse." [Wikipedia:Hippocampus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ammon's horn" EXACT []
synonym: "ammon's horn" RELATED []
synonym: "Hippocampus" EXACT []
synonym: "Hippocampus major" EXACT []
synonym: "hippocampus major" EXACT []
synonym: "Hippocampus proper" EXACT []
synonym: "hippocampus proper" EXACT []
xref: BTO:0000601
xref: EFO:0000530
xref: FMA:62493
xref: GAID:623
xref: HOG:0001177
xref: MA:0000191
xref: MAT:0000114
xref: MIAA:0000114
xref: ncithesaurus:Hippocampus
xref: NIF_GrossAnatomy:birnlex_721
xref: NIF_GrossAnatomy:birnlex_726
xref: OpenCyc:Mx4rv3piFJwpEbGdrcN5Y29ycA
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0000349 ! limbic system
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0001955
name: epithelium of respiratory bronchiole
alt_id: UBERON:FMA_62498-MA_0001773
comment: This class was created automatically from a combination of ontologies
synonym: "Epithelium of respiratory bronchiole" EXACT []
synonym: "Respiratory bronchiole epithelium" EXACT []
synonym: "respiratory bronchiole epithelium" EXACT []
xref: FMA:62498
xref: MA:0001773
xref: ncithesaurus:Respiratory_Bronchiole_Epithelium
is_a: UBERON:0002051 ! epithelium of bronchiole
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002188 ! respiratory bronchiole
relationship: part_of UBERON:0002188 ! respiratory bronchiole
[Term]
id: UBERON:0001956
name: cartilage of bronchus
alt_id: UBERON:FMA_62649-MA_0001835
comment: This class was created automatically from a combination of ontologies
synonym: "Bronchial cartilage" EXACT []
synonym: "bronchial cartilage" EXACT []
synonym: "bronchus cartilage" EXACT []
synonym: "Cartilage of bronchus" EXACT []
xref: FMA:62649
xref: MA:0001835
xref: ncithesaurus:Bronchus_Cartilage
is_a: UBERON:0002418 ! cartilage
is_a: UBERON:0003603 ! implied link automatically realized ! lower respiratory tract cartilage
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0001957
name: submucosa of bronchus
alt_id: UBERON:FMA_62653-MA_0001837
comment: This class was created automatically from a combination of ontologies
synonym: "Bronchial submucosa" EXACT []
synonym: "bronchial submucosa" EXACT []
synonym: "bronchus submucosa" EXACT []
synonym: "Submucosa of bronchus" EXACT []
xref: FMA:62653
xref: MA:0001837
xref: ncithesaurus:Bronchus_Submucosa
is_a: UBERON:0000009 ! submucosa
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0001958
name: epithelium of terminal bronchiole
alt_id: UBERON:FMA_62794-MA_0001774
comment: This class was created automatically from a combination of ontologies
synonym: "Epithelium of terminal bronchiole" EXACT []
synonym: "Terminal bronchiole epithelium" EXACT []
synonym: "terminal bronchiole epithelium" EXACT []
xref: FMA:62794
xref: MA:0001774
xref: ncithesaurus:Terminal_Bronchiole_Epithelium
is_a: UBERON:0002051 ! epithelium of bronchiole
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002187 ! terminal bronchiole
relationship: part_of UBERON:0002187 ! terminal bronchiole
[Term]
id: UBERON:0001959
name: white pulp of spleen
alt_id: UBERON:FMA_62805-MA_0000762
def: "The white pulp contains T cells, B cells and accessory cells. The function of the white pulp is to mount an immunological response to antigens within the blood. The white pulp is present in the form of a periarteriolar lymphoid sheath. This sheath contains B cell follicles and T cells. At the edge of the T zone is a region known as the marginal zone where larger lymphocytes and antigen presenting dendritic cells are located." [Wikipedia:White_pulp]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "spleen white pulp" EXACT []
synonym: "White pulp" EXACT []
synonym: "white pulp" EXACT []
synonym: "White pulp of spleen" EXACT []
xref: FMA:62805
xref: MA:0000762
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0001960
name: periarterial lymphatic sheath
alt_id: UBERON:FMA_62810-MA_0000765
comment: This class was created automatically from a combination of ontologies
synonym: "PALS" EXACT []
synonym: "pals" EXACT []
synonym: "Periarterial lymphatic sheath" EXACT []
synonym: "Periarterial lymphoid sheath" EXACT []
synonym: "periarterial lymphoid sheath" EXACT []
synonym: "spleen periarteriolar lymphatic sheath" EXACT []
xref: FMA:62810
xref: MA:0000765
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001959 ! white pulp of spleen
[Term]
id: UBERON:0001961
name: mucosa-associated lymphoid tissue
alt_id: UBERON:FMA_62819-MA_0000140
def: "diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [Wikipedia:Mucosa-associated_lymphoid_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Epithelio-lymphoid tissue" EXACT []
synonym: "epithelio-lymphoid tissue" EXACT []
synonym: "MALT" EXACT []
synonym: "malt" EXACT []
synonym: "mucosa associated lymphatic tissue" EXACT []
synonym: "mucosa associated lymphoid tissue" EXACT []
synonym: "Mucosa-associated lymphoid tissue" EXACT []
xref: FMA:62819
xref: MA:0000140
xref: ncithesaurus:Mucosa-Associated_Lymphoid_Tissue
is_a: UBERON:0001744 ! lymphoid tissue
relationship: part_of UBERON:0001744 ! lymphoid tissue
[Term]
id: UBERON:0001962
name: gut-associated lymphoid tissue
alt_id: UBERON:FMA_62820-MA_0000136
def: "Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [Wikipedia:Gut-associated_lymphoid_tissue]
subset: uberon_slim
synonym: "GALT" RELATED []
synonym: "gut associated lymphoid tissue" EXACT []
synonym: "Gut-associated lymphoid tissue" EXACT []
xref: FMA:62820
xref: MA:0000136
xref: ncithesaurus:Gut_Associated_Lymphoid_Tissue
is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue
[Term]
id: UBERON:0001963
name: bronchial-associated lymphoid tissue
alt_id: UBERON:FMA_62821-MA_0000135
comment: This class was created automatically from a combination of ontologies
synonym: "BALT" RELATED []
synonym: "Bronchial-associated lymphoid tissue" EXACT []
synonym: "bronchus associated lymphoid tissue" EXACT []
xref: FMA:62821
xref: MA:0000135
xref: ncithesaurus:Bronchus-Associated_Lymphoid_Tissue
is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue
[Term]
id: UBERON:0001964
name: least splanchnic nerve
alt_id: UBERON:FMA_6283-MA_0002635
def: "." [Wikipedia:Least_splanchnic_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Least splanchnic nerve" EXACT []
synonym: "Least thoracic splanchnic nerve" EXACT []
synonym: "least thoracic splanchnic nerve" EXACT []
synonym: "Lowest splanchnic nerve" EXACT []
synonym: "lowest splanchnic nerve" EXACT []
synonym: "Renal branch of lesser splanchnic nerve" EXACT []
synonym: "renal branch of lesser splanchnic nerve" EXACT []
synonym: "Renal nerve" EXACT []
synonym: "renal nerve" EXACT []
xref: FMA:6283
xref: MA:0002635
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0001965
name: substantia nigra pars compacta
alt_id: UBERON:FMA_62907-MA_0001064
def: "Regional part of substantia nigra consisting of a densely packed region of cells, more or less dorsal to the pars reticulata, but extending into the pars reticulata in some species. The dominant neurotransmitter used by pars compacta neurons is dopamine. Pars compacta neurons are pigmented in many species (MM)[NIF]." [NIF_GrossAnatomy:birnlex_990, Wikipedia:Substantia_nigra_pars_compacta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Compact part of substantia nigra" EXACT []
synonym: "compact part of substantia nigra" EXACT []
synonym: "Pars compacta" EXACT []
synonym: "pars compacta" EXACT []
synonym: "SNpc" EXACT []
synonym: "Substantia nigra pars compacta" EXACT []
synonym: "Substantia nigra, compact part" EXACT []
synonym: "substantia nigra, compact part" EXACT []
xref: BTO:0003749
xref: FMA:62907
xref: MA:0001064
xref: NIF_GrossAnatomy:birnlex_990
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
relationship: part_of UBERON:0002038 ! substantia nigra
[Term]
id: UBERON:0001966
name: substantia nigra pars reticulata
alt_id: UBERON:FMA_62908-MA_0001066
def: "Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM)[NLex]." [Neurolex:Substantia_nigra_pars_reticulata, Wikipedia:Pars_reticulata]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pars reticulata" EXACT []
synonym: "pars reticulata" EXACT []
synonym: "Reticular part of substantia nigra" EXACT []
synonym: "reticular part of substantia nigra" EXACT []
synonym: "Substantia nigra pars reticulata" EXACT []
synonym: "Substantia nigra, reticular part" EXACT []
synonym: "substantia nigra, reticular part" EXACT []
xref: BTO:0003750
xref: FMA:62908
xref: MA:0001066
xref: NIF_GrossAnatomy:birnlex_968
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
relationship: part_of UBERON:0002038 ! substantia nigra
[Term]
id: UBERON:0001967
name: reticular lamina
alt_id: UBERON:FMA_62924-MA_0001194
def: "." [Wikipedia:Reticular_lamina]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Fibroreticular lamina" EXACT []
synonym: "fibroreticular lamina" EXACT []
synonym: "Lamina fibroreticularis" EXACT []
synonym: "lamina fibroreticularis" EXACT []
synonym: "Reticular lamina" EXACT []
synonym: "reticular membrane" RELATED []
xref: FMA:62924
xref: MA:0001194
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: part_of UBERON:0000476 ! acellular anatomical structure
relationship: part_of UBERON:0002227 ! spiral organ of cochlea
[Term]
id: UBERON:0001968
name: semen
alt_id: UBERON:FMA_62966-MA_0002522
alt_id: UBERON:FMA_62967-MA_0002523-MIAA_0000057
alt_id: UBERON:FMA_62969-MA_0002526
def: "Body substance which consists of spermatozoa and seminal plasma. // Secretion produced prostatic glands, bulbourethral glands or the seminal vesicles." [Wikipedia:Semen]
comment: TODO: check semen vs seminal fluid
subset: uberon_slim
synonym: "Secretion of seminal vesicle" EXACT []
synonym: "secretion of seminal vesicle" EXACT []
synonym: "Semen" EXACT []
synonym: "semen" BROAD []
synonym: "Seminal fluid" EXACT []
synonym: "seminal fluid" EXACT []
synonym: "Seminal vesicle secretion" EXACT []
synonym: "seminal vesicle secretion" EXACT []
xref: BTO:0001230
xref: FMA:62966
xref: FMA:62967
xref: FMA:62969
xref: GAID:1169
xref: MA:0002522
xref: MA:0002523
xref: MA:0002526
xref: MAT:0000057
xref: MIAA:0000057
xref: ncithesaurus:Semen
xref: OpenCyc:Mx4rvgC-zpwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001969
name: blood plasma
alt_id: UBERON:FMA_62970-MA_0002501-MIAA_0000052
def: "Body substance in liquid state contained in the lumen of arterial and venous trees, blood capillary and the cardiac chambers; constitutes the liquid phase of blood." [Wikipedia:Blood_plasma]
subset: uberon_slim
synonym: "plasma" EXACT []
synonym: "portion of blood plasma" EXACT []
synonym: "portion of plasma" EXACT []
xref: BTO:0000131
xref: EFO:0001905
xref: FMA:62970
xref: GAID:1178
xref: MA:0002501
xref: MAT:0000052
xref: MIAA:0000052
xref: ncithesaurus:Plasma
xref: OpenCyc:Mx4rEg4ZYrIbEduAAAAOpmP6tw
is_a: UBERON:0000179 ! implied link automatically realized ! haemolymphatic fluid
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0000178 ! blood
[Term]
id: UBERON:0001970
name: bile
alt_id: UBERON:FMA_62971-MA_0002513
def: "." [Wikipedia:Bile]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bile" EXACT []
xref: BTO:0000121
xref: ENVO:02000023
xref: FMA:62971
xref: GAID:1157
xref: galen:Bile
xref: MA:0002513
xref: ncithesaurus:Bile
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001971
name: gastric juice
alt_id: UBERON:FMA_62972-MA_0002519
def: "." [Wikipedia:Gastric_juice]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Gastric juice" EXACT []
synonym: "stomach secretion" EXACT []
xref: BTO:0000501
xref: FMA:62972
xref: GAID:1160
xref: galen:GastricJuice
xref: MA:0002519
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001972
name: submucosa of esophagus
alt_id: UBERON:FMA_62997-MA_0002724
synonym: "esophageal submucosa" EXACT []
synonym: "esophagus submucosa" EXACT []
synonym: "submucosa of esophagus" EXACT []
xref: FMA:62997
xref: MA:0002724
is_a: UBERON:0000009 ! submucosa
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001096 ! wall of esophagus
[Term]
id: UBERON:0001973
name: substance of tooth
alt_id: UBERON:FMA_63001-MA_0002540
def: "Body substance in solid state produced by odontoblasts, amyloblasts or cementoblasts." []
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Substance of tooth" EXACT []
synonym: "Tooth substance" EXACT []
synonym: "tooth substance" EXACT []
xref: FMA:63001
xref: MA:0002540
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0001974
name: lamina propria of esophagus
alt_id: UBERON:FMA_63050-MA_0001568
comment: This class was created automatically from a combination of ontologies
synonym: "esophagus lamina propria" EXACT []
synonym: "Lamina propria mucosae of esophagus" EXACT []
synonym: "lamina propria mucosae of esophagus" EXACT []
synonym: "Lamina propria of esophagus" EXACT []
synonym: "oesophagus lamina propria" RELATED []
xref: FMA:63050
xref: MA:0001568
is_a: UBERON:0000030 ! lamina propria
is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue
is_a: UBERON:0003593 ! implied link automatically realized ! thoracic cavity connective tissue
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0001975
name: serosa of esophagus
alt_id: UBERON:FMA_63057-MA_0001571
comment: This class was created automatically from a combination of ontologies
synonym: "Esophagus serosa" EXACT []
synonym: "esophagus serosa" EXACT []
synonym: "oesophagus serosa" RELATED []
synonym: "Serosa of abdominal part of esophagus" EXACT []
synonym: "serosa of abdominal part of esophagus" EXACT []
synonym: "Serosa of esophagus" EXACT []
synonym: "Serosa of oesophagus" EXACT []
synonym: "serosa of oesophagus" EXACT []
synonym: "Serous coat of oesophagus" EXACT []
synonym: "serous coat of oesophagus" EXACT []
xref: FMA:63057
xref: MA:0001571
is_a: UBERON:0000042 ! serous membrane
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001096 ! wall of esophagus
[Term]
id: UBERON:0001976
name: epithelium of esophagus
alt_id: UBERON:FMA_63063-MA_0001565-ZFA_0001499
def: "Simple columnar epithelium that lines the esophagus. Chen et al, 2007." [ZFIN:curator]
comment: Different kinds of epithelium in ZFA and FMA - DV with CARO
subset: uberon_slim
synonym: "Epithelium of esophagus" EXACT []
synonym: "Esophageal epithelium" EXACT []
synonym: "esophageal epithelium" EXACT []
synonym: "Esophagus epithelium" EXACT []
synonym: "esophagus epithelium" EXACT []
synonym: "oesophagus epithelium" RELATED []
xref: BTO:0001578
xref: FMA:63063
xref: MA:0001565
xref: ncithesaurus:Esophageal_Epithelium
xref: TAO:0001499
xref: ZFA:0001499
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0000486 ! multilaminar epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0001977
name: serum
alt_id: UBERON:FMA_63083-MA_0002502
def: "Body substance derived from plasma by the elimination of fibrinogen." [Wikipedia:Serum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Blood serum" EXACT []
synonym: "blood serum" EXACT []
synonym: "Serum" EXACT []
xref: BTO:0000133
xref: BTO:0001239
xref: FMA:63083
xref: MA:0002502
xref: ncithesaurus:Serum
is_a: UBERON:0000179 ! implied link automatically realized ! haemolymphatic fluid
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001969 ! blood plasma
[Term]
id: UBERON:0001978
name: parenchyma of pancreas
alt_id: UBERON:FMA_63120-MA_0000724
comment: This class was created automatically from a combination of ontologies
synonym: "pancreas parenchyma" EXACT []
synonym: "Pancreatic parenchyma" EXACT []
synonym: "pancreatic parenchyma" EXACT []
synonym: "Parenchyma of pancreas" EXACT []
xref: FMA:63120
xref: HOG:0001430
xref: MA:0000724
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0001979
name: venule
alt_id: UBERON:FMA_63130-MA_0000071
def: "Subdivision of venous tree (organ) which is directly continuous with the capillary vessel." [Wikipedia:Venule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Venule" EXACT []
xref: BTO:0002626
xref: FMA:63130
xref: MA:0000071
xref: ncithesaurus:Venule
xref: ZFA:0005315
is_a: UBERON:0003920 ! venous blood vessel
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0001980
name: arteriole
alt_id: UBERON:FMA_63182-MA_0000063
def: "Subdivision of arterial tree (organ) which is directly continuous with capillary vessel." [Wikipedia:Arteriole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Arteriole" EXACT []
xref: BTO:0001997
xref: FMA:63182
xref: MA:0000063
xref: ncithesaurus:Arteriole
xref: ZFA:0005255
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0001981
name: blood vessel
alt_id: UBERON:FMA_63183-XAO_0001011
def: "A vessel through which blood circulates in the body." [BTO:0001102, Wikipedia:Blood_vessel]
comment: note that FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX
subset: uberon_slim
synonym: "Blood vessel" EXACT []
xref: BTO:0001102
xref: EFO:0000817
xref: EHDAA:240
xref: FMA:50722
xref: FMA:63183
xref: GAID:169
xref: HOG:0001250
xref: MA:0000060
xref: MAT:0000393
xref: ncithesaurus:Blood_Vessel
xref: OpenCyc:Mx4rvVjxlpwpEbGdrcN5Y29ycA
xref: XAO:0001011
xref: ZFA:0005314
is_a: UBERON:0000055 ! vessel
disjoint_from: UBERON:0001473 ! lymphatic vessel
relationship: has_part UBERON:0000178 ! blood
relationship: part_of UBERON:0001009 ! circulatory system
relationship: part_of UBERON:0002049 ! vasculature
[Term]
id: UBERON:0001982
name: capillary
alt_id: UBERON:FMA_63194-MA_0000065-XAO_0000116
def: "Subdivision of vascular tree (organ) which connects an arteriole to a venule or vice-versa. // Any of the smallest blood vessels connecting arterioles with venules." [NLM:capillary, Wikipedia:Capillary]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Blood capillary" EXACT []
synonym: "blood capillary" EXACT []
synonym: "Capillary" EXACT []
synonym: "Capillary vessel" EXACT []
synonym: "capillary vessel" EXACT []
xref: BTO:0002045
xref: EFO:0001906
xref: FMA:63194
xref: HOG:0001253
xref: MA:0000065
xref: ncithesaurus:Capillary
xref: OpenCyc:Mx4rvWEU-5wpEbGdrcN5Y29ycA
xref: XAO:0000116
xref: ZFA:0005250
is_a: UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0001983
name: crypt of lieberkuhn
alt_id: UBERON:FMA_63621-MA_0001535
def: "A gland found in the epithelial lining of the small intestine and colon." [Wikipedia:Crypts_of_Lieberkuhn]
comment: This class was created automatically from a combination of ontologies
synonym: "Crypt of Lieberkuhn" EXACT []
synonym: "intestinal gland" EXACT [Wikipedia:Crypts_of_Lieberkuhn]
synonym: "Lieberkuhn crypt" EXACT []
synonym: "lieberkuhn crypt" EXACT []
xref: FMA:63621
xref: MA:0001535
xref: ncithesaurus:Crypts_of_the_Lieberkuhn
is_a: UBERON:0000333 ! implied link automatically realized ! intestinal gland
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0001242 ! intestinal mucosa
[Term]
id: UBERON:0001984
name: crypt of lieberkuhn of large intestine
alt_id: UBERON:FMA_63622-MA_0001544
comment: This class was created automatically from a combination of ontologies
synonym: "Crypt of Lieberkuhn of large intestine" EXACT []
synonym: "Large intestinal crypt of Lieberkuhn" EXACT []
synonym: "large intestinal crypt of lieberkuhn" EXACT []
synonym: "large intestine crypt of lieberkuhn" EXACT []
xref: FMA:63622
xref: MA:0001544
xref: ncithesaurus:Large_Intestinal_Crypt_of_the_Lieberkuhn
is_a: UBERON:0001983 ! crypt of lieberkuhn
intersection_of: UBERON:0001983 ! crypt of lieberkuhn
intersection_of: part_of UBERON:0000059 ! large intestine
relationship: part_of UBERON:0001207 ! mucosa of large intestine
[Term]
id: UBERON:0001985
name: corneal endothelium
alt_id: UBERON:FMA_63882-MA_0001242
def: "A monolayer of specialized, flattened, mitochondria-rich cells that lines the posterior surface of the cornea and faces the anterior chamber of the eye[WP]." [Wikipedia:Corneal_endothelium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: FMA:63882
xref: GAID:891
xref: MA:0001242
xref: ncithesaurus:Corneal_Endothelium
xref: ZFA:0001687
is_a: UBERON:0001772 ! implied link automatically realized ! corneal epithelium
is_a: UBERON:0001986 ! endothelium
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0000964 ! cornea
[Term]
id: UBERON:0001986
name: endothelium
alt_id: UBERON:FMA_63916-ZFA_0001639
def: "An endothelium is an epithelium that lines an anatomical structure[GO]. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium[GO]. Simple squamous epithelium which lines blood and lymphatic vessels and the heart[ZFA]." [GO:0001935, GO:0003158, Wikipedia:Endothelium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Endothelium" EXACT []
xref: BTO:0000393
xref: EHDAA:1011
xref: EHDAA:1543
xref: EHDAA:1560
xref: EHDAA:1566
xref: EHDAA:1578
xref: EHDAA:2211
xref: EHDAA:2217
xref: EHDAA:2227
xref: EHDAA:3076
xref: EHDAA:3082
xref: EHDAA:3790
xref: EHDAA:4953
xref: EHDAA:4961
xref: EHDAA:4975
xref: EHDAA:4983
xref: EHDAA:4991
xref: FMA:63916
xref: GAID:520
xref: galen:Endothelium
xref: ncithesaurus:Endothelium
xref: ZFA:0001639
is_a: UBERON:0000487 ! simple squamous epithelium
[Term]
id: UBERON:0001987
name: placenta
alt_id: UBERON:FMA_63934-MA_0000386-MIAA_0000279
def: "organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin[GO]." [Wikipedia:Placenta]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Placenta" EXACT []
xref: BTO:0001078
xref: EFO:0001407
xref: FMA:63934
xref: GAID:379
xref: HOG:0001266
xref: MA:0000386
xref: MAT:0000279
xref: MIAA:0000279
xref: ncithesaurus:Placenta
is_a: UBERON:0000478 ! extraembryonic structure
relationship: part_of UBERON:0000990 ! reproductive system
[Term]
id: UBERON:0001988
name: feces
alt_id: UBERON:FMA_64183-MA_0002509-MIAA_0000053
def: "Excretion in semisolid state processed by the intestine." [Wikipedia:Feces]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "faeces" EXACT []
synonym: "Fecal matter" EXACT []
synonym: "fecal matter" EXACT []
synonym: "Feces" EXACT []
synonym: "Stool" EXACT []
synonym: "stool" EXACT []
xref: BTO:0000440
xref: ENVO:00002003
xref: FMA:64183
xref: GAID:1199
xref: galen:Feces
xref: MA:0002509
xref: MAT:0000053
xref: MIAA:0000053
xref: ncithesaurus:Feces
xref: OpenCyc:Mx4rvVjJMZwpEbGdrcN5Y29ycA
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0001989
name: superior cervical ganglion
alt_id: UBERON:FMA_6467-MA_0001156-ZFA_0001572
def: "Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain." [Wikipedia:Superior_cervical_ganglion, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Superior cervical ganglion" EXACT []
synonym: "Superior cervical sympathetic ganglion" EXACT []
synonym: "superior cervical sympathetic ganglion" EXACT []
synonym: "superior sympathetic cervical ganglion" RELATED []
xref: BTO:0001325
xref: EFO:0001945
xref: EHDAA:8943
xref: FMA:6467
xref: GAID:712
xref: MA:0001156
xref: TAO:0001572
xref: ZFA:0001572
is_a: UBERON:0001991 ! cervical ganglion
[Term]
id: UBERON:0001990
name: middle cervical ganglion
alt_id: UBERON:FMA_6468-MA_0001155
def: "." [Wikipedia:Middle_cervical_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Middle cervical ganglion" EXACT []
synonym: "Middle cervical sympathetic ganglion" EXACT []
synonym: "middle cervical sympathetic ganglion" EXACT []
xref: BTO:0000359
xref: EHDAA:8941
xref: FMA:6468
xref: MA:0001155
is_a: UBERON:0001991 ! cervical ganglion
[Term]
id: UBERON:0001991
name: cervical ganglion
alt_id: UBERON:FMA_6470-MA_0001153
def: "." [Wikipedia:Cervical_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cervical ganglion" EXACT []
synonym: "Cervical sympathetic ganglion" EXACT []
synonym: "cervical sympathetic ganglion" EXACT []
xref: BTO:0000113
xref: FMA:6470
xref: MA:0001153
is_a: UBERON:0001807 ! paravertebral ganglion
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0000002 ! cervix
[Term]
id: UBERON:0001992
name: papillary layer of dermis
alt_id: UBERON:FMA_64776-MA_0000800
def: "Dense irregular connective tissue of the skin that consists of fibroblasts, various connective tissue cell types, and collagen, predominantly type III." [Wikipedia:Papillary_dermis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dermis papillary layer" EXACT []
synonym: "Papillary dermis" EXACT []
synonym: "papillary dermis" EXACT []
synonym: "Papillary layer of dermis" EXACT []
xref: FMA:64776
xref: MA:0000800
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002067 ! dermis
[Term]
id: UBERON:0001993
name: reticular layer of dermis
alt_id: UBERON:FMA_64778-MA_0000801
def: "Dense irregular connective tissue that consists of elastic fibers and collagen, predominantly type I." [Wikipedia:Reticular_dermis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dermis reticular layer" EXACT []
synonym: "Reticular dermis" EXACT []
synonym: "reticular dermis" EXACT []
synonym: "Reticular layer of dermis" EXACT []
xref: FMA:64778
xref: MA:0000801
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002067 ! dermis
[Term]
id: UBERON:0001994
name: hyaline cartilage
alt_id: UBERON:FMA_64783-MA_0000109
def: "Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel with a perichondrium." [Wikipedia:Hyaline_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hyaline cartilage" EXACT []
xref: FMA:64783
xref: MA:0000109
xref: ncithesaurus:Hyaline_Cartilage
is_a: UBERON:0002418 ! cartilage
[Term]
id: UBERON:0001995
name: fibrocartilage
alt_id: UBERON:FMA_64784-MA_0000108
def: "Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel without a well-defined perichondrium." [Wikipedia:Fibrocartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Fibrocartilage" EXACT []
xref: FMA:64784
xref: galen:Fibrocartilage
xref: MA:0000108
xref: ncithesaurus:Fibrocartilage
is_a: UBERON:0002418 ! cartilage
[Term]
id: UBERON:0001996
name: elastic cartilage
alt_id: UBERON:FMA_64785-MA_0000107
def: "Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which consists of elastic fibers." [Wikipedia:Elastic_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Elastic cartilage" EXACT []
xref: FMA:64785
xref: MA:0000107
xref: ncithesaurus:Elastic_Cartilage
is_a: UBERON:0002418 ! cartilage
[Term]
id: UBERON:0001997
name: olfactory epithelium
alt_id: UBERON:FMA_64803-ZFA_0000554
def: "Nasal epithelium wherein ciliated olfactory receptor neurons, supporting cells, and basal cells are located." [Wikipedia:Olfactory_epithelium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nasal epithelium" RELATED []
synonym: "nasal sensory epithelium" RELATED []
synonym: "Olfactory epithelium" EXACT []
synonym: "Olfactory sensory epithelium" EXACT []
synonym: "olfactory sensory epithelium" EXACT []
synonym: "Sensory olfactory epithelium" EXACT []
synonym: "sensory olfactory epithelium" EXACT []
xref: BTO:0000108
xref: EFO:0001972
xref: FMA:64803
xref: HOG:0000985
xref: MAT:0000445
xref: ncithesaurus:Olfactory_Epithelium
xref: NIF_GrossAnatomy:birnlex_2703
xref: TAO:0000554
xref: ZFA:0000554
is_a: UBERON:0000485 ! simple columnar epithelium
is_a: UBERON:0003234 ! implied link automatically realized ! epithelium of nasal cavity
is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa
relationship: part_of UBERON:0001826 ! mucosa of nose
[Term]
id: UBERON:0001998
name: sternocostal joint
alt_id: UBERON:FMA_64877-MA_0001512
comment: This class was created automatically from a combination of ontologies
synonym: "Sternochondral joint" EXACT []
synonym: "sternochondral joint" EXACT []
synonym: "Sternocostal joint" EXACT []
xref: FMA:64877
xref: FMA:71376
xref: FMA:7954
xref: GAID:271
xref: MA:0001512
xref: ncithesaurus:Sternocostal_Joint
is_a: UBERON:0002001 ! joint of rib
[Term]
id: UBERON:0001999
name: iliopsoas
alt_id: UBERON:FMA_64918-MA_0002321
def: "Anatomical cluster consisting of iliacus, psoas major, psoas minor[WP]." [Wikipedia:Iliopsoas]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hyrtl's muscle" EXACT []
synonym: "hyrtl's muscle" EXACT []
synonym: "Iliopsoas" EXACT []
xref: FMA:64918
xref: MA:0002321
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002000
name: gluteal muscle
alt_id: UBERON:FMA_64922-MA_0000535
def: "." [Wikipedia:Gluteal_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Gluteal muscle" EXACT []
xref: BTO:0000531
xref: FMA:64922
xref: MA:0000535
is_a: UBERON:0001497 ! muscle of pelvic girdle
[Term]
id: UBERON:0002001
name: joint of rib
alt_id: UBERON:FMA_64994-MA_0001508
comment: This class was created automatically from a combination of ontologies
synonym: "Joint of rib" EXACT []
synonym: "Rib joint" EXACT []
synonym: "rib joint" EXACT []
xref: FMA:64994
xref: MA:0001508
xref: ncithesaurus:Joint_of_the_Rib
is_a: UBERON:0000982 ! joint
is_a: UBERON:0003657 ! implied link automatically realized ! limb joint
intersection_of: UBERON:0000982 ! joint
intersection_of: part_of UBERON:0002228 ! rib
[Term]
id: UBERON:0002002
name: interchondral joint
alt_id: UBERON:FMA_64996-MA_0001511
comment: This class was created automatically from a combination of ontologies
synonym: "Interchondral joint" EXACT []
xref: FMA:64996
xref: FMA:71378
xref: FMA:7955
xref: MA:0001511
is_a: UBERON:0002001 ! joint of rib
[Term]
id: UBERON:0002003
name: peripheral nerve
alt_id: UBERON:FMA_65239-MA_0000228-XAO_0000204
def: "Neural tree (organ) which is directly continuous with the neuraxis. Examples: phrenic nerve, radial nerve, ilioinguinal nerve, sciatic nerve." [Wikipedia:Peripheral_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Peripheral nerve" EXACT []
synonym: "Peripheral nerve tree" EXACT []
synonym: "peripheral nerve tree" EXACT []
xref: BTO:0001027
xref: FMA:65239
xref: GAID:747
xref: HOG:0000901
xref: MA:0000228
xref: ncithesaurus:Peripheral_Nerve
xref: XAO:0000204
is_a: UBERON:0001021 ! nerve
[Term]
id: UBERON:0002004
name: trunk of sciatic nerve
alt_id: UBERON:FMA_65507-MA_0001178
comment: This class was created automatically from a combination of ontologies
synonym: "sciatic nerve trunk" EXACT []
synonym: "Sciatic neural trunk" EXACT []
synonym: "sciatic neural trunk" EXACT []
synonym: "Trunk of sciatic nerve" EXACT []
xref: FMA:65507
xref: MA:0001178
is_a: UBERON:0001147 ! trunk of peripheral nerve
[Term]
id: UBERON:0002005
name: enteric nervous system
alt_id: UBERON:FMA_66070-MA_0000222-MIAA_0000102-ZFA_0001155
def: "The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation[GO]." [Wikipedia:Enteric_nervous_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Enteric nervous system" EXACT []
synonym: "PNS - enteric" EXACT []
synonym: "pns - enteric" EXACT []
xref: BTO:0002506
xref: EFO:0000895
xref: FMA:66070
xref: GAID:799
xref: MA:0000222
xref: MAT:0000102
xref: MIAA:0000102
xref: NIF_GrossAnatomy:birnlex_1166
xref: TAO:0001155
xref: ZFA:0001155
is_a: UBERON:0002410 ! autonomic nervous system
[Term]
id: UBERON:0002006
name: cortex of lymph node
alt_id: UBERON:FMA_66253-MA_0000740
def: "Peripheral portion of the lymph node, underneath the capsule[WP]." [Wikipedia:Cortex_of_lymph_node]
subset: uberon_slim
synonym: "Cortex of lymph node" EXACT []
synonym: "Lymph node cortex" EXACT []
synonym: "lymph node cortex" EXACT []
xref: FMA:66253
xref: MA:0000740
xref: ncithesaurus:Lymph_Node_Cortex
is_a: UBERON:0001851 ! cortex
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002007
name: medulla of lymph node
alt_id: UBERON:FMA_66254-MA_0000745
def: "." [Wikipedia:Medulla_of_lymph_node]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lymph node medulla" EXACT []
synonym: "lymph node medulla" EXACT []
synonym: "Medulla of lymph node" EXACT []
xref: FMA:66254
xref: MA:0000745
is_a: UBERON:0000958 ! medulla
intersection_of: UBERON:0000958 ! medulla
intersection_of: part_of UBERON:0000029 ! lymph node
relationship: part_of UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002008
name: cardiac nerve plexus
alt_id: UBERON:FMA_6628-MA_0001138
def: "a plexus of nerves situated at the base of the heart that innervate the heart." [Wikipedia:Cardiac_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cardiac nerve plexus" EXACT []
synonym: "Cardiac plexus" EXACT []
synonym: "cardiac plexus" EXACT []
xref: FMA:6628
xref: MA:0001138
xref: ncithesaurus:Cardiac_Nerve_Plexus
is_a: UBERON:0001816 ! autonomic nerve plexus
intersection_of: UBERON:0001816 ! autonomic nerve plexus
intersection_of: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002009
name: pulmonary nerve plexus
alt_id: UBERON:FMA_6629-MA_0001143
def: "." [Wikipedia:Pulmonary_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pulmonary nerve plexus" EXACT []
synonym: "Pulmonary plexus" EXACT []
synonym: "pulmonary plexus" EXACT []
xref: FMA:6629
xref: MA:0001143
is_a: UBERON:0001816 ! autonomic nerve plexus
relationship: part_of UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002010
name: celiac nerve plexus
alt_id: UBERON:FMA_6630-MA_0001139
def: "." [Wikipedia:Celiac_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Celiac nerve plexus" EXACT []
synonym: "Celiac plexus" EXACT []
synonym: "celiac plexus" EXACT []
synonym: "Coeliac nerve plexus" EXACT []
synonym: "coeliac nerve plexus" RELATED []
synonym: "Coeliac plexus" EXACT []
synonym: "coeliac plexus" EXACT []
xref: FMA:6630
xref: GAID:796
xref: MA:0001139
is_a: UBERON:0001816 ! autonomic nerve plexus
[Term]
id: UBERON:0002011
name: thoracodorsal artery
alt_id: UBERON:FMA_66320-MA_0002065
def: "." [Wikipedia:Thoracodorsal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Thoracodorsal artery" EXACT []
xref: FMA:66320
xref: MA:0002065
xref: ncithesaurus:Thoracodorsal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002012
name: pulmonary artery
alt_id: UBERON:FMA_66326-MA_0002031
def: "." [Wikipedia:Pulmonary_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pulmonary arterial tree" EXACT []
synonym: "pulmonary arterial tree" EXACT []
synonym: "Pulmonary arterial tree organ part" EXACT []
synonym: "pulmonary arterial tree organ part" EXACT []
synonym: "Pulmonary artery" EXACT []
xref: BTO:0000778
xref: EFO:0001399
xref: EHDAA:4351
xref: FMA:66326
xref: GAID:505
xref: HOG:0000982
xref: MA:0002031
xref: ncithesaurus:Pulmonary_Artery
xref: OpenCyc:Mx4rvVjbIpwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002013
name: superior hypogastric nerve plexus
alt_id: UBERON:FMA_6642-MA_0001142
def: "." [Wikipedia:Superior_hypogastric_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Presacral nerve" EXACT []
synonym: "presacral nerve" EXACT []
synonym: "Superior hypogastric nerve plexus" EXACT []
synonym: "Superior hypogastric plexus" EXACT []
synonym: "superior hypogastric plexus" EXACT []
xref: FMA:6642
xref: MA:0001142
is_a: UBERON:0001816 ! autonomic nerve plexus
relationship: part_of UBERON:0001816 ! autonomic nerve plexus
[Term]
id: UBERON:0002014
name: inferior hypogastric nerve plexus
alt_id: UBERON:FMA_6643-MA_0001141
def: "." [Wikipedia:Inferior_hypogastric_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Inferior hypogastric nerve plexus" EXACT []
synonym: "Inferior hypogastric plexus" EXACT []
synonym: "inferior hypogastric plexus" EXACT []
synonym: "Pelvic nerve plexus" EXACT []
synonym: "pelvic nerve plexus" EXACT []
synonym: "Pelvic plexus" EXACT []
synonym: "pelvic plexus" EXACT []
xref: FMA:6643
xref: MA:0001141
xref: ncithesaurus:Inferior_Hypogastric_Nerve_Plexus
is_a: UBERON:0001816 ! autonomic nerve plexus
relationship: part_of UBERON:0001816 ! autonomic nerve plexus
[Term]
id: UBERON:0002015
name: fibrous capsule of kidney
alt_id: UBERON:FMA_66610-MA_0000370
def: "." [Wikipedia:Kidney_capsule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Capsule of kidney" EXACT []
synonym: "capsule of kidney" EXACT []
synonym: "Fibrous capsule of kidney" EXACT []
synonym: "kidney capsule" EXACT []
synonym: "renal capsule" RELATED []
xref: FMA:66610
xref: galen:CapsuleOfKidney
xref: MA:0000370
is_a: UBERON:0002384 ! connective tissue
is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0002016
name: pulmonary vein
alt_id: UBERON:FMA_66643-MA_0002206-XAO_0000394
def: "Pulmonary veins are blood vessels that transport blood from the lungs to the heart[GO]." [Wikipedia:Pulmonary_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pulmonary vein" EXACT []
synonym: "Pulmonary venous tree organ part" EXACT []
synonym: "pulmonary venous tree organ part" EXACT []
xref: BTO:0001799
xref: EHDAA:2629
xref: FMA:66643
xref: GAID:543
xref: HOG:0001133
xref: MA:0002206
xref: ncithesaurus:Pulmonary_Vein
xref: XAO:0000394
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002017
name: portal vein
alt_id: UBERON:FMA_66645-MA_0002198-XAO_0000392
def: "." [Wikipedia:Portal_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Portal vein" EXACT []
synonym: "Portal venous tree organ part" EXACT []
synonym: "portal venous tree organ part" EXACT []
xref: BTO:0001792
xref: EHDAA:6510
xref: FMA:66645
xref: GAID:540
xref: HOG:0000656
xref: MA:0002198
xref: ncithesaurus:Portal_Vein
xref: OpenCyc:Mx4rv_bem5wpEbGdrcN5Y29ycA
xref: XAO:0000392
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002018
name: synovial membrane
alt_id: UBERON:FMA_66762-MA_0000114
def: "Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints)." [Wikipedia:Synovial_membrane]
comment: TODO - check membrane vs sheath
subset: uberon_slim
synonym: "Synovial layer" EXACT []
synonym: "synovial layer" EXACT []
synonym: "Synovial membrane" EXACT []
synonym: "synovial sheath" RELATED []
synonym: "synovium" EXACT []
xref: BTO:0001823
xref: EFO:0001393
xref: FMA:66762
xref: GAID:264
xref: HOG:0001282
xref: MA:0000114
xref: ncithesaurus:Synovial_Membrane
is_a: UBERON:0000042 ! serous membrane
[Term]
id: UBERON:0002019
name: spinal accessory nerve
alt_id: UBERON:FMA_6720-MA_0001088
def: "In mice, the spinal branch of this motor nerve innervates the trapezius and the sternocleidomastoid muscles. The cranial branch joins the vagus nerve and innervates the same targets as the vagus nerve[GO]." [Wikipedia:Spinal_accessory_nerve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Accessory nerve" EXACT []
synonym: "accessory nerve" EXACT []
synonym: "Accessory nerve [XI]" EXACT []
synonym: "accessory nerve [xi]" EXACT []
synonym: "accessory XI nerve" EXACT []
synonym: "accessory xi nerve" EXACT []
synonym: "Cervical accessory nerve" EXACT []
synonym: "cervical accessory nerve" EXACT []
synonym: "Spinal accessory nerve" EXACT []
synonym: "Spinal accessory nerve tree" EXACT []
synonym: "spinal accessory nerve tree" EXACT []
synonym: "Spinal part of accessory nerve" EXACT []
synonym: "spinal part of accessory nerve" EXACT []
synonym: "Willis' nerve" EXACT []
synonym: "willis' nerve" EXACT []
xref: FMA:6720
xref: GAID:825
xref: MA:0001088
xref: ncithesaurus:Accessory_Nerve
xref: NIF_GrossAnatomy:birnlex_812
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0002020
name: gray matter of neuraxis
alt_id: UBERON:FMA_67242-MA_0001112
def: "Heterogeneous cluster of neural somas in the brain and the spinal cord." [Wikipedia:Gray_matter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Gray matter" EXACT []
synonym: "gray matter" EXACT []
synonym: "Gray matter of neuraxis" EXACT []
synonym: "Grey matter" EXACT []
synonym: "grey matter" EXACT []
synonym: "Grey substance" EXACT []
synonym: "grey substance" EXACT []
xref: FMA:67242
xref: MA:0001112
xref: ncithesaurus:Gray_Matter
xref: ZFA:0001681
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0002021
name: occipital lobe
alt_id: UBERON:FMA_67325-MA_0000913-ZFA_0001414
def: "Occipital lobe is the one of five lobes of the cerebral hemisphere which occupies the posterior-most portion of the hemisphere. Anteriorly, it shares an arbitrary border with the parietal lobe and temporal lobe. Medially, it is bounded by the longitudinal cerebral fissure." [Wikipedia:Occipital_lobe]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "basicranial region" RELATED []
synonym: "Occipital cortex" EXACT []
synonym: "occipital cortex" EXACT []
synonym: "Occipital lobe" EXACT []
synonym: "Occipital region" EXACT []
synonym: "occipital region" EXACT []
xref: BTO:0000293
xref: EFO:0000915
xref: FMA:67325
xref: GAID:678
xref: MA:0000913
xref: MAT:0000507
xref: ncithesaurus:Occipital_Lobe
xref: NIF_GrossAnatomy:birnlex_1136
xref: OpenCyc:Mx4rv9OFy5wpEbGdrcN5Y29ycA
xref: TAO:0001414
xref: ZFA:0001414
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: adjacent_to UBERON:0001871 ! temporal lobe
relationship: adjacent_to UBERON:0001872 ! parietal lobe
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0001950 ! neocortex
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0002022
name: insula
alt_id: UBERON:FMA_67329-MA_0000909
def: "The insula is the one of five lobes of the cerebral hemisphere. It lies in the depths of the lateral fissure and is covered by portions of the frontal, parietal and temporal lobes." [Wikipedia:Insula]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Central lobe" EXACT []
synonym: "central lobe" EXACT []
synonym: "Cortex of island" EXACT []
synonym: "cortex of island" EXACT []
synonym: "Insula" EXACT []
synonym: "Insula lobule" EXACT []
synonym: "insula lobule" EXACT []
synonym: "Insular cortex" EXACT []
synonym: "insular cortex" EXACT []
synonym: "Insular lobe" EXACT []
synonym: "insular lobe" EXACT []
synonym: "Insular region" EXACT []
synonym: "insular region" EXACT []
synonym: "Island of Reil" EXACT []
synonym: "island of reil" EXACT []
xref: BTO:0001105
xref: FMA:67329
xref: MA:0000909
xref: ncithesaurus:Central_Lobe
xref: NIF_GrossAnatomy:birnlex_1117
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0002023
name: claustrum
alt_id: UBERON:FMA_67440-MA_0000888
def: "Subdivision located in the telencephalon which is a member of the anatomical set \"Basal ganglia\". The claustrum is made up primarily of cellular neural tissue (gray matter), and is located lateral to the caudate nucleus and external capsule and medial to the insula." [Wikipedia:Claustrum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Claustrum" EXACT []
synonym: "Dorsal claustrum" EXACT []
synonym: "dorsal claustrum" EXACT []
synonym: "Dorsal portion of claustrum" EXACT []
synonym: "dorsal portion of claustrum" EXACT []
xref: FMA:67440
xref: MA:0000888
xref: ncithesaurus:Claustrum
xref: NIF_GrossAnatomy:birnlex_1522
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001869 ! cerebral hemisphere
relationship: part_of UBERON:0002420 ! basal ganglia
[Term]
id: UBERON:0002024
name: internal carotid nerve plexus
alt_id: UBERON:FMA_67533-MA_0001162
def: "." [Wikipedia:Internal_carotid_nerve_plexus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Internal carotid nerve plexus" EXACT []
synonym: "Internal carotid plexus" EXACT []
synonym: "internal carotid plexus" EXACT []
xref: FMA:67533
xref: MA:0001162
xref: ncithesaurus:Internal_Carotid_Nerve_Plexus
is_a: UBERON:0001816 ! autonomic nerve plexus
[Term]
id: UBERON:0002025
name: basal cell layer of epidermis
alt_id: UBERON:FMA_67540-MA_0000803
def: "Deepest layer of the layers of the epidermis[WP]." [Wikipedia:Stratum_germinativum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Basal cell layer of epidermis" EXACT []
synonym: "epidermis basal layer" RELATED []
synonym: "epidermis stratum basale" EXACT []
synonym: "epidermis stratum germinativum" RELATED []
synonym: "Stratum basale of epidermis" EXACT []
synonym: "stratum basale of epidermis" EXACT []
synonym: "Stratum basalis of epidermis" EXACT []
synonym: "stratum basalis of epidermis" EXACT []
synonym: "Stratum germinativum" EXACT []
synonym: "stratum germinativum" EXACT []
xref: BTO:0000438
xref: FMA:67540
xref: MA:0000803
is_a: UBERON:0000119 ! cell layer
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0002026
name: prickle cell layer of epidermis
alt_id: UBERON:FMA_67542-MA_0000807
def: "a layer of the epidermis found between the stratum granulosum and stratum basale. Has cells that produce and secrete bipolar lipids which prevent evaporation, helping to " [Wikipedia:Stratum_spinosum]
comment: This class was created automatically from a combination of ontologies
synonym: "epidermis prickle cell layer" RELATED []
synonym: "epidermis stratum spinosum" EXACT []
synonym: "Prickle cell layer of epidermis" EXACT []
synonym: "Squamous cell layer of epidermis" EXACT []
synonym: "squamous cell layer of epidermis" EXACT []
synonym: "Stratum Malphighii" EXACT []
synonym: "stratum malphighii" EXACT []
synonym: "stratum spinosum" EXACT []
synonym: "Stratum spinosum of epidermis" EXACT []
synonym: "stratum spinosum of epidermis" EXACT []
xref: FMA:67542
xref: MA:0000807
is_a: UBERON:0000061 ! anatomical structure
relationship: adjacent_to UBERON:0002025 ! basal cell layer of epidermis
relationship: adjacent_to UBERON:0002069 ! granular layer of epidermis
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0002027
name: horny layer of epidermis
alt_id: UBERON:FMA_67545-MA_0000804
def: "outermost layer of the epidermis, composed of large, flat, polyhedral, plate-like envelopes filled with keratin, which is made up of dead cells that have migrated up from the stratum granulosum." [Wikipedia:Stratum_corneum]
synonym: "epidermis stratum corneum" EXACT []
synonym: "Horny layer of epidermis" EXACT []
synonym: "stratum corneum" EXACT []
synonym: "Stratum corneum of epidermis" EXACT []
synonym: "stratum corneum of epidermis" EXACT []
xref: FMA:67545
xref: MA:0000804
is_a: UBERON:0003055 ! outermost layer of epidermis
[Term]
id: UBERON:0002028
name: hindbrain
alt_id: UBERON:FMA_67687-MA_0000195-MIAA_0000107-XAO_0000015-ZFA_0000029
def: "Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata . Examples: There is only one hindbrain. // The most posterior of the three principal regions of the brain, forming the rhombencephalon and all or most of the metencephalon. Kimmel et al, 1995." [Wikipedia:Hindbrain, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hindbrain" EXACT []
synonym: "rhombencephalon" RELATED []
xref: BTO:0000672
xref: EFO:0000923
xref: EHDAA:3514
xref: EHDAA:6487
xref: FMA:67687
xref: HOG:0000070
xref: MA:0000195
xref: MAT:0000107
xref: MIAA:0000107
xref: NIF_GrossAnatomy:birnlex_942
xref: TAO:0000029
xref: XAO:0000015
xref: ZFA:0000029
is_a: UBERON:0002616 ! regional part of brain
relationship: develops_from UBERON:0003076 ! posterior neural tube
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002029
name: epithelium of gall bladder
alt_id: UBERON:FMA_67711-MA_0001632
comment: This class was created automatically from a combination of ontologies
synonym: "biliary epithelium" RELATED []
synonym: "Epithelium of gall bladder" EXACT []
synonym: "Gall bladder epithelium" EXACT []
synonym: "gall bladder epithelium" EXACT []
xref: BTO:0001449
xref: FMA:67711
xref: MA:0001632
is_a: UBERON:0000485 ! simple columnar epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002110 ! gallbladder
relationship: part_of UBERON:0002110 ! gallbladder
[Term]
id: UBERON:0002030
name: nipple
alt_id: UBERON:FMA_67771-MA_0000796
def: "Projection of skin containing the outlets for 15-20 lactiferous ducts arranged cylindrically around the tip." [Wikipedia:Nipple]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Nipple" EXACT []
synonym: "papilla mammae" EXACT [MP:0009723]
synonym: "papilla of breast" EXACT []
synonym: "Papillary part of breast" EXACT []
synonym: "papillary part of breast" EXACT []
synonym: "Teat" EXACT []
synonym: "teat" EXACT []
synonym: "thele" EXACT [MP:0009723]
synonym: "thelium" EXACT [MP:0009723]
xref: BTO:0000821
xref: FMA:67771
xref: GAID:35
xref: MA:0000796
xref: ncithesaurus:Nipple
xref: OpenCyc:Mx4rvVjKi5wpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0001911 ! lactiferous gland
[Term]
id: UBERON:0002031
name: epithelium of bronchus
alt_id: UBERON:FMA_67782-MA_0001839
comment: This class was created automatically from a combination of ontologies
synonym: "Bronchial epithelium" EXACT []
synonym: "bronchial epithelium" EXACT []
synonym: "bronchus epithelium" EXACT []
synonym: "Epithelium of bronchus" EXACT []
xref: BTO:0001845
xref: EFO:0000307
xref: FMA:67782
xref: MA:0001839
xref: ncithesaurus:Bronchial_Epithelium
is_a: UBERON:0000485 ! simple columnar epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0002032
name: areola
alt_id: UBERON:FMA_67796-MA_0000788
def: "Subdivision of breast which consists of skin, connective tissue and smooth muscle bundle and modified sebaceous glands and which surrounds the nipple." [Wikipedia:Areola]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Areola" EXACT []
xref: FMA:67796
xref: MA:0000788
xref: ncithesaurus:Areola
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0001911 ! lactiferous gland
[Term]
id: UBERON:0002033
name: arrector muscle of hair
alt_id: UBERON:FMA_67821-MA_0000778
def: "tiny muscle fiber attached to each hair follicle, which contract to make the hairs stand on end, causing goose bumps. They exist in most mammals including humans." [http://en.wikipedia.org/wiki/Arrector_pili, Wikipedia:Arrector_pili]
subset: uberon_slim
synonym: "arrector pili" EXACT [FMA:67821, MA:0000778]
xref: FMA:67821
xref: MA:0000778
is_a: UBERON:0001135 ! smooth muscle tissue
relationship: attached_to UBERON:0002073 ! hair follicle
[Term]
id: UBERON:0002034
name: suprachiasmatic nucleus
alt_id: UBERON:FMA_67883-MA_0000843-ZFA_0000441
def: "." [Wikipedia:Suprachiasmatic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Suprachiasmatic nucleus" EXACT []
synonym: "Suprachiasmatic nucleus of hypothalamus" EXACT []
synonym: "suprachiasmatic nucleus of hypothalamus" EXACT []
xref: BTO:0001822
xref: EFO:0002475
xref: FMA:67883
xref: GAID:645
xref: HOG:0000036
xref: MA:0000843
xref: ncithesaurus:Suprachiasmatic_Nucleus
xref: NIF_GrossAnatomy:birnlex_1325
xref: TAO:0000441
xref: ZFA:0000441
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0002272 ! medial zone of hypothalamus
[Term]
id: UBERON:0002035
name: medial preoptic nucleus
alt_id: UBERON:FMA_67890-MA_0000840
def: "." [Wikipedia:Medial_preoptic_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Medial preoptic area" EXACT []
synonym: "medial preoptic area" EXACT []
synonym: "Medial preoptic hypothalamic nucleus" EXACT []
synonym: "medial preoptic hypothalamic nucleus" EXACT []
synonym: "Medial preoptic nucleus" EXACT []
xref: FMA:67890
xref: MA:0000840
xref: NIF_GrossAnatomy:birnlex_706
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0001928 ! preoptic area
[Term]
id: UBERON:0002036
name: striated muscle tissue
alt_id: UBERON:FMA_67905-MA_0002438
def: "Tissue which consists of striated muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue, Cardiac muscle tissue[FMA]." [FMA:67905, Wikipedia:Striated_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "striated muscle" EXACT []
synonym: "Striated muscle tissue" EXACT []
xref: FMA:67905
xref: MA:0002438
xref: ncithesaurus:Striated_Muscle_Tissue
is_a: UBERON:0002385 ! muscle tissue
[Term]
id: UBERON:0002037
name: cerebellum
alt_id: UBERON:FMA_67944-FMA_78469-MA_0000196-MA_0000198-MIAA_0000110-XAO_0003098-XAO_0003099-ZFA_0000100-ZFA_0000110
def: "Organ component of neuraxis that has as its parts the cerebellar cortex, cerebellar nuclear complex and cerebellar white matter. Examples: There is only one cerebellum. // Specialized brain region derived from the dorsal metencephalon (anterior hindbrain, and perhaps including posterior midbrain) and becoming distinctive late in the segmentation period. Kimmel et al, 1995. // Fluid-filled brain cavity. Kimmel et al, 1995." [Wikipedia:Cerebellum, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cerebellum" EXACT []
synonym: "Epencephalon-1" EXACT []
synonym: "epencephalon-1" EXACT []
synonym: "hindbrain ventricle" RELATED []
synonym: "rhombencephalic ventricle" RELATED []
synonym: "rhombencephalic vesicle" RELATED []
xref: BTO:0000232
xref: EFO:0000327
xref: FMA:67944
xref: GAID:595
xref: HOG:0000024
xref: MA:0000198
xref: MAT:0000110
xref: MIAA:0000110
xref: ncithesaurus:Cerebellum
xref: NIF_GrossAnatomy:birnlex_1489
xref: TAO:0000100
xref: XAO:0003098
xref: ZFA:0000100
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
relationship: part_of UBERON:0001895 ! metencephalon
[Term]
id: UBERON:0002038
name: substantia nigra
alt_id: UBERON:FMA_67947-MA_0000210
def: "Subdivision of the midbrain anterior to the midbrain tegmentum which contains darkly pigmented neurons." [Wikipedia:Substantia_nigra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Nucleus of basis pedunculi" EXACT []
synonym: "nucleus of basis pedunculi" EXACT []
synonym: "Soemmering's substance" EXACT []
synonym: "soemmering's substance" EXACT []
synonym: "Substantia nigra" EXACT []
xref: BTO:0000143
xref: EFO:0000922
xref: FMA:67947
xref: GAID:581
xref: MA:0000210
xref: MAT:0000504
xref: ncithesaurus:Substantia_Nigra
xref: NIF_GrossAnatomy:birnlex_789
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
relationship: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001900 ! subthalamus
[Term]
id: UBERON:0002039
name: inferior phrenic vein
alt_id: UBERON:FMA_68068-MA_0002195
def: "." [Wikipedia:Inferior_phrenic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Inferior phrenic vein" EXACT []
xref: FMA:68068
xref: MA:0002195
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002040
name: bronchial artery
alt_id: UBERON:FMA_68109-MA_0001923
def: "." [Wikipedia:Bronchial_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bronchial arterial tree" EXACT []
synonym: "bronchial arterial tree" EXACT []
synonym: "Bronchial artery" EXACT []
xref: FMA:68109
xref: GAID:477
xref: MA:0001923
xref: ncithesaurus:Bronchial_Artery
xref: OpenCyc:Mx4r4sy0UiNbEd2AAAACs6hRXg
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002041
name: terminal bronchus
alt_id: UBERON:FMA_68416-MA_0000440
comment: This class was created automatically from a combination of ontologies
synonym: "Terminal bronchus" EXACT []
xref: FMA:68416
xref: MA:0000440
is_a: UBERON:0002185 ! bronchus
[Term]
id: UBERON:0002042
name: endothelium of lymphatic vessel
alt_id: UBERON:FMA_68444-MA_0000750
comment: This class was created automatically from a combination of ontologies
synonym: "Endothelium of lymphatic vessel" EXACT []
synonym: "Lymphatic vessel endothelium" EXACT []
synonym: "lymphatic vessel endothelium" EXACT []
xref: FMA:68444
xref: MA:0000750
xref: ncithesaurus:Lymphatic_Vessel_Endothelium
is_a: UBERON:0001986 ! endothelium
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001473 ! lymphatic vessel
relationship: part_of UBERON:0001473 ! lymphatic vessel
[Term]
id: UBERON:0002043
name: dorsal raphe nucleus
alt_id: UBERON:FMA_68462-ZFA_0000366
def: "." [Wikipedia:Dorsal_raphe_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cell group B7" EXACT []
synonym: "cell group b7" EXACT []
synonym: "Dorsal nucleus of the raphe" EXACT []
synonym: "dorsal nucleus of the raphe" EXACT []
synonym: "Dorsal nucleus raphe" EXACT []
synonym: "dorsal nucleus raphe" EXACT []
synonym: "Dorsal raphe nucleus" EXACT []
synonym: "inferior raphe nucleus" EXACT []
synonym: "Posterior raphe nucleus" EXACT []
synonym: "posterior raphe nucleus" RELATED []
xref: BTO:0002434
xref: EFO:0001919
xref: FMA:68462
xref: NIF_GrossAnatomy:birnlex_982
xref: TAO:0000366
xref: ZFA:0000366
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002044
name: ventral nucleus of posterior commissure
alt_id: UBERON:FMA_68464-MA_0001072
comment: This class was created automatically from a combination of ontologies
synonym: "Darkshevich's nucleus" EXACT []
synonym: "darkshevich's nucleus" EXACT []
synonym: "Nucleus of Darkschewitsch" EXACT []
synonym: "nucleus of darkschewitsch" EXACT []
synonym: "Ventral nucleus of posterior commissure" EXACT []
xref: FMA:68464
xref: MA:0001072
xref: NIF_GrossAnatomy:birnlex_896
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002045
name: cuneate nucleus
alt_id: UBERON:FMA_68465-MA_0001035
def: "." [Wikipedia:Cuneate_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Burdach's nucleus" EXACT []
synonym: "burdach's nucleus" EXACT []
synonym: "Cuneate nucleus" EXACT []
xref: FMA:68465
xref: MA:0001035
xref: ncithesaurus:Cuneate_Nucleus
xref: NIF_GrossAnatomy:birnlex_2640
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002046
name: thyroid follicle
alt_id: UBERON:FMA_68805-FMA_9603-MA_0000129-MA_0000726-MIAA_0000081-XAO_0000162-ZFA_0001072
def: "Lobular organ the parenchyma of which consists of ductless, glandular follicles filled with colloid. Examples: thyroid gland proper, accessory thyroid gland, lingual thyroid gland." [Wikipedia:Thyroid_follicle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "thyroid" EXACT []
synonym: "Thyroid follicle" EXACT []
synonym: "Thyroid gland" EXACT []
synonym: "thyroid gland" EXACT []
synonym: "thyroid gland follicle" EXACT []
synonym: "thyroid primordium" BROAD []
xref: BTO:0001379
xref: EFO:0000861
xref: EHDAA:2148
xref: EHDAA:2975
xref: FMA:68805
xref: FMA:9603
xref: GAID:465
xref: HOG:0000418
xref: MA:0000129
xref: MA:0000726
xref: MAT:0000081
xref: MIAA:0000081
xref: ncithesaurus:Thyroid_Gland
xref: OpenCyc:Mx4rvVjLT5wpEbGdrcN5Y29ycA
xref: TAO:0001072
xref: XAO:0000162
xref: ZFA:0001072
is_a: UBERON:0002530 ! gland
relationship: develops_from UBERON:0003091 ! thyroid primordium
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0002047
name: pontine raphe nucleus
alt_id: UBERON:FMA_68875-MA_0001022
def: "." [Wikipedia:Pontine_raphe_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pontine raphe nucleus" EXACT []
synonym: "Raphe of pons" EXACT []
synonym: "raphe of pons" EXACT []
synonym: "Raphe pontis nucleus" EXACT []
synonym: "raphe pontis nucleus" RELATED []
xref: FMA:68875
xref: MA:0001022
xref: NIF_GrossAnatomy:birnlex_1110
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002048
name: lung
alt_id: UBERON:FMA_68877-FMA_7195-MA_0000415-MIAA_0000135-XAO_0000119
def: "Lobular organ the parenchyma of which consists of air-filled alveoli which communicate with the tracheobronchial tree. Examples: There are only two instances, right lung and left lung. // Saccular thoracic organ that constitutes the basic respiratory organ." [BTO:0000763, Wikipedia:Lung]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: AAO:0000275
xref: BTO:0000763
xref: EFO:0000934
xref: EHDAA:1554
xref: EHDAA:2205
xref: FMA:7195
xref: GAID:345
xref: MA:0000415
xref: MAT:0000135
xref: MIAA:0000135
xref: ncithesaurus:Lung
xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA
xref: XAO:0000119
is_a: UBERON:0000171 ! respiration organ
relationship: develops_from UBERON:0000118 ! lung bud
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0002049
name: vasculature
alt_id: UBERON:FMA_69050-XAO_0001010-ZFA_0001079
def: "Anatomical system that has as its parts the blood and lymph vessels." [Wikipedia:Vasculature, XB:curator]
comment: This class was created automatically from a combination of ontologies.
subset: uberon_slim
synonym: "Vascular network" EXACT []
synonym: "vascular network" EXACT []
synonym: "Vasculature" EXACT []
xref: BTO:0003718
xref: FMA:69050
xref: TAO:0001079
xref: XAO:0001010
xref: ZFA:0001079
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002050
name: embryonic structure
alt_id: UBERON:FMA_69067-XAO_0003042-ZFA_0001105
def: "An anatomical structure that exists only before the organism is fully formed. // Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells." [BTO:0000174, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "developing structure" RELATED []
synonym: "Embryonic structure" EXACT []
xref: AAO:0000138
xref: BILA:0000034
xref: BTO:0000174
xref: EFO:0000461
xref: FMA:69067
xref: GAID:407
xref: ncithesaurus:Embryonic_Structure
xref: TAO:0001105
xref: XAO:0003042
xref: ZFA:0001105
is_a: UBERON:0000061 ! anatomical structure
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: existence_ends_during UBERON:0000068 ! embryo stage
intersection_of: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0002051
name: epithelium of bronchiole
alt_id: UBERON:FMA_69077-MA_0001772
comment: This class was created automatically from a combination of ontologies
synonym: "Bronchiole epithelium" EXACT []
synonym: "bronchiole epithelium" EXACT []
synonym: "Epithelium of bronchiole" EXACT []
xref: FMA:62497
xref: FMA:69077
xref: MA:0001772
xref: ncithesaurus:Bronchiole_Epithelium
is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium
is_a: UBERON:0000485 ! simple columnar epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002186 ! bronchiole
relationship: part_of UBERON:0002186 ! bronchiole
[Term]
id: UBERON:0002052
name: capsule of adrenal gland
alt_id: UBERON:FMA_69087-MA_0000117
comment: This class was created automatically from a combination of ontologies
synonym: "Adrenal gland capsule" EXACT []
synonym: "adrenal gland capsule" EXACT []
synonym: "Capsule of adrenal gland" EXACT []
xref: FMA:69087
xref: MA:0000117
xref: ncithesaurus:Adrenal_Gland_Capsule
is_a: UBERON:0003893 ! capsule
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0002369 ! adrenal gland
relationship: surrounds UBERON:0002369 ! adrenal gland
[Term]
id: UBERON:0002053
name: zona glomerulosa of adrenal gland
alt_id: UBERON:FMA_69225-MA_0001891
def: "." [Wikipedia:Zona_glomerulosa]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adrenal gland zona glomerulosa" EXACT []
synonym: "Zona glomerulosa" EXACT []
synonym: "zona glomerulosa" EXACT []
synonym: "Zona glomerulosa of adrenal gland" EXACT []
synonym: "Zona glomerulosa of suprarenal gland" EXACT []
synonym: "zona glomerulosa of suprarenal gland" EXACT []
xref: BTO:0000048
xref: FMA:69225
xref: GAID:449
xref: MA:0001891
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001235 ! adrenal cortex
[Term]
id: UBERON:0002054
name: zona fasciculata of adrenal gland
alt_id: UBERON:FMA_69234-MA_0001890
def: "." [Wikipedia:Zona_fasciculata]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adrenal gland zona fasciculata" EXACT []
synonym: "Zona fasciculata" EXACT []
synonym: "zona fasciculata" EXACT []
synonym: "Zona fasciculata of adrenal gland" EXACT []
synonym: "Zona fasciculata of suprarenal gland" EXACT []
synonym: "zona fasciculata of suprarenal gland" EXACT []
xref: BTO:0000050
xref: FMA:69234
xref: GAID:448
xref: MA:0001890
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001235 ! adrenal cortex
[Term]
id: UBERON:0002055
name: zona reticularis of adrenal gland
alt_id: UBERON:FMA_69236-MA_0001892
def: "." [Wikipedia:Zona_reticularis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "adrenal gland zona reticularis" EXACT []
synonym: "Zona reticularis" EXACT []
synonym: "zona reticularis" EXACT []
synonym: "Zona reticularis of adrenal gland" EXACT []
synonym: "Zona reticularis of suprarenal gland" EXACT []
synonym: "zona reticularis of suprarenal gland" EXACT []
xref: FMA:69236
xref: GAID:450
xref: MA:0001892
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001235 ! adrenal cortex
[Term]
id: UBERON:0002056
name: inferior suprarenal artery
alt_id: UBERON:FMA_69264-MA_0002056
def: "." [Wikipedia:Inferior_suprarenal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Inferior suprarenal artery" EXACT []
xref: FMA:69264
xref: MA:0002056
xref: ncithesaurus:Inferior_Suprarenal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002057
name: phrenic artery
alt_id: UBERON:FMA_69330-MA_0002019
def: "." [Wikipedia:Phrenic_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Phrenic artery" EXACT []
xref: FMA:69330
xref: MA:0002019
xref: ncithesaurus:Phrenic_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002058
name: ciliary ganglion
alt_id: UBERON:FMA_6964-MA_0001136
def: "." [Wikipedia:Ciliary_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ciliary ganglion" EXACT []
xref: EFO:0002559
xref: FMA:6964
xref: HOG:0000805
xref: MA:0001136
is_a: UBERON:0001808 ! parasympathetic ganglion
[Term]
id: UBERON:0002059
name: submandibular ganglion
alt_id: UBERON:FMA_6966-MA_0002470
def: "." [Wikipedia:Submandibular_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Submandibular ganglion" EXACT []
xref: BTO:0001318
xref: FMA:6966
xref: MA:0002470
xref: ncithesaurus:Submandibular_Ganglion
is_a: UBERON:0001808 ! parasympathetic ganglion
[Term]
id: UBERON:0002060
name: femoral artery
alt_id: UBERON:FMA_70248-MA_0001951
def: "." [Wikipedia:Femoral_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Femoral artery" EXACT []
xref: BTO:0001624
xref: FMA:70248
xref: GAID:494
xref: galen:FemoralArtery
xref: MA:0001951
xref: ncithesaurus:Femoral_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002061
name: truncus arteriosus
alt_id: UBERON:FMA_70301-MA_0000103
def: "." [Wikipedia:Truncus_arteriosus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Truncus arteriosus" EXACT []
xref: FMA:70301
xref: GAID:554
xref: MA:0000103
xref: OpenCyc:Mx4rquH9YKgNEdudWQACs5b6Bw
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0002062
name: endocardial cushion
alt_id: UBERON:FMA_70302-MA_0000078-ZFA_0001317
def: "Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves." [Wikipedia:Endocardial_cushion, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Endocardial cushion" EXACT []
synonym: "endocardial cushions" RELATED []
xref: FMA:70302
xref: HOG:0000932
xref: MA:0000078
xref: TAO:0001317
xref: ZFA:0001317
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002063
name: sinus venosus
alt_id: UBERON:FMA_70303-ZFA_0000154
def: "a large quadrangular cavity which precedes the atrium on the venous side of the chordate heart. In humans, it exists distinctly only in the embryonic heart, where it is found between the two venae cavae. In the adult, it is incorporated into the wall of the right atrium to form a smooth part called the sinus venarum, also known as the venarum sinus, which is separated from the rest of the atrium by a ridge of fibres called the crista terminalis[Wikipedia]. Heart region collecting blood from the paired common cardinal veins and delivering to the atrium. One of four heart chambers, the sinus venosus also acts as a pacemaker and is the first to contract. Kimmel et al, 1995." [Wikipedia:Sinus_venosus, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sinus venosus" EXACT []
xref: EHDAA:480
xref: FMA:70303
xref: HOG:0000177
xref: ncithesaurus:Sinus_Venosus
xref: TAO:0000154
xref: ZFA:0000154
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002064
name: common cardinal vein
alt_id: UBERON:FMA_70308-ZFA_0000186
def: "Bilaterally paired longitudinal vein; the anterior cardinal returns blood from the head, and the posterior cardinal returns it from the trunk; these two vessels join together on each side as the common cardinal vein (duct of Cuvier; misnamed the vitelline vein) that leads across the yolk cell to the heart's sinus venosus. Kimmel et al, 1995." [Wikipedia:Common_cardinal_vein, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Common cardinal vein" EXACT []
synonym: "duct of Cuvier" RELATED []
xref: FMA:70308
xref: HOG:0000112
xref: ncithesaurus:Common_Cardinal_Vein
xref: TAO:0000186
xref: ZFA:0000186
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
relationship: part_of UBERON:0002201 ! vasculature of trunk
[Term]
id: UBERON:0002065
name: postcardinal vein
alt_id: UBERON:FMA_70314-ZFA_0000477
def: "Continuation of the caudal vein cranial to the anal pore. The cardinal vein splits into a pair of vessels in the cranial trunk, just caudal to the radix of the aorta. The posterior cardinals each empty into the common cardinal vein. " [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "axial vein" RELATED []
synonym: "caudal cardinal veins" RELATED []
synonym: "PCV" RELATED []
synonym: "Postcardinal vein" EXACT []
synonym: "posterior cardinal vein" EXACT []
xref: FMA:70314
xref: HOG:0000111
xref: ncithesaurus:Posterior_Cardinal_Vein
xref: TAO:0000477
xref: ZFA:0000477
is_a: UBERON:0001638 ! vein
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
relationship: part_of UBERON:0002201 ! vasculature of trunk
[Term]
id: UBERON:0002066
name: umbilical vein
alt_id: UBERON:FMA_70317-MA_0002249
def: "." [Wikipedia:Umbilical_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Umbilical vein" EXACT []
xref: BTO:0001509
xref: EFO:0001940
xref: EHDAA:1034
xref: EHDAA:488
xref: FMA:70317
xref: GAID:542
xref: MA:0002249
xref: ncithesaurus:Umbilical_Vein
xref: OpenCyc:Mx4rdu17MmWaEd2AAABQjYGu0g
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002067
name: dermis
alt_id: UBERON:FMA_70323-MA_0000152-MIAA_0000153-XAO_0000217-ZFA_0001119
def: "Dense irregular connective tissue which consists of a papillary layer and a reticular layer. // A collagenous layer of the skin subjacent to the epidermis and covering the hypodermis. It contains various types of cells (e.g. fibroblasts, pigment cells, nerve, blood vessels and scales. Le Guellec et al, 2004." [Wikipedia:Dermis, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Dermis" EXACT []
xref: AAO:0000128
xref: BTO:0000294
xref: EFO:0000953
xref: FMA:70323
xref: GAID:1321
xref: HOG:0000108
xref: MA:0000152
xref: MAT:0000153
xref: MIAA:0000153
xref: ncithesaurus:Dermis
xref: TAO:0001119
xref: XAO:0000217
xref: ZFA:0001119
is_a: UBERON:0000064 ! organ part
relationship: develops_from UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0002199 ! integument
[Term]
id: UBERON:0002068
name: urachus
alt_id: UBERON:FMA_70343-MA_0001701
def: "." [Wikipedia:Urachus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Urachus" EXACT []
xref: EHDAA:7016
xref: EHDAA:9332
xref: FMA:70343
xref: GAID:1313
xref: HOG:0000735
xref: MA:0001701
xref: ncithesaurus:Urachus
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001255 ! urinary bladder
[Term]
id: UBERON:0002069
name: granular layer of epidermis
alt_id: UBERON:FMA_70344-MA_0000805
def: "A layer of the epidermis found between the stratum corneum (and possibly stratum lucidum) and stratum spinosum.[1] In this layer, keratinocytes are now called granular cells, and contain keratohyalin and lamellar granules." [Wikipedia:Stratum_granulosum]
comment: This class was created automatically from a combination of ontologies
synonym: "epidermis granular layer" RELATED []
synonym: "epidermis stratum granulosum" EXACT []
synonym: "Granular layer of epidermis" EXACT []
synonym: "stratum granulosum" EXACT []
synonym: "Stratum granulosum of epidermis" EXACT []
synonym: "stratum granulosum of epidermis" EXACT []
xref: FMA:70344
xref: MA:0000805
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0002070
name: superior pancreaticoduodenal artery
alt_id: UBERON:FMA_70437-MA_0002015
def: "." [Wikipedia:Superior_pancreaticoduodenal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "superior pancreatico-duodenal artery" EXACT []
synonym: "Superior pancreaticoduodenal artery" EXACT []
xref: FMA:70437
xref: MA:0002015
xref: ncithesaurus:Superior_Pancreatico-Duodenal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002071
name: stratum lucidum of epidermis
alt_id: UBERON:FMA_70540-MA_0000806
comment: This class was created automatically from a combination of ontologies
synonym: "epidermis stratum lucidum" EXACT []
synonym: "Stratum conjunctum of epidermis" EXACT []
synonym: "stratum conjunctum of epidermis" EXACT []
synonym: "Stratum lucidum of epidermis" EXACT []
xref: FMA:70540
xref: MA:0000806
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0002072
name: hypodermis
alt_id: UBERON:FMA_70544-MIAA_0000418-ZFA_0000117-ZFA_0001136
def: "Lowermost layer of the integumentary system in vertebrates. Types of cells that are found in the hypodermis are fibroblasts, adipose cells, and macrophages. It is derived from the mesoderm, but unlike the dermis, it is not derived from the dermatome region of the mesoderm. In arthropods, the hypodermis is an epidermal layer of cells that secretes the chitinous cuticle. The term also refers to a layer of cells lying immediately below the epidermis of plants. This cell is also used to supervise the outer skin from burns and other such articulates. The hypodermis is used mainly for fat storage[WP]. A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells[FMA]." [Wikipedia:Hypodermis, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hypoderm" EXACT []
synonym: "Hypodermis" EXACT []
synonym: "subcutaneous tissue" EXACT []
synonym: "subcutis" RELATED []
synonym: "superficial fascia" EXACT []
xref: BTO:0000313
xref: FMA:70544
xref: GAID:929
xref: ncithesaurus:Superficial_Fascia
xref: TAO:0001136
xref: ZFA:0001136
is_a: UBERON:0002384 ! connective tissue
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0002199 ! integument
[Term]
id: UBERON:0002073
name: hair follicle
alt_id: UBERON:FMA_70660-MA_0000154
def: "a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open[GO]." [Wikipedia:Hair_follicle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hair follicle" EXACT []
xref: BTO:0000554
xref: EFO:0002464
xref: FMA:70660
xref: GAID:934
xref: HOG:0001268
xref: MA:0000154
xref: ncithesaurus:Hair_Follicle
xref: OpenCyc:Mx4rvVjOI5wpEbGdrcN5Y29ycA
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0002097 ! skin
[Term]
id: UBERON:0002074
name: hair shaft
alt_id: UBERON:FMA_70728-MA_0000159
comment: This class was created automatically from a combination of ontologies
synonym: "Hair shaft" EXACT []
xref: FMA:70728
xref: MA:0000159
is_a: UBERON:0000021 ! cutaneous appendage
relationship: part_of UBERON:0001037 ! hair
relationship: part_of UBERON:0002073 ! hair follicle
[Term]
id: UBERON:0002075
name: viscus
alt_id: UBERON:FMA_7085-XAO_0003034
def: "An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen. // An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper." [BTO:0001491, Wikipedia:Viscus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "viscera" RELATED []
synonym: "Viscus" EXACT []
xref: BTO:0001491
xref: FMA:7085
xref: XAO:0003034
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0002076
name: cuticle of hair
alt_id: UBERON:FMA_70933-MA_0000157
comment: This class was created automatically from a combination of ontologies
synonym: "Cuticle of hair" EXACT []
synonym: "Hair cuticle" EXACT []
synonym: "hair cuticle" EXACT []
xref: FMA:70933
xref: MA:0000157
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001037 ! hair
[Term]
id: UBERON:0002077
name: cortex of hair
alt_id: UBERON:FMA_70934-MA_0000156
comment: This class was created automatically from a combination of ontologies
synonym: "Cortex of hair" EXACT []
synonym: "Hair cortex" EXACT []
synonym: "hair cortex" EXACT []
xref: FMA:70934
xref: MA:0000156
is_a: UBERON:0001851 ! cortex
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0001037 ! hair
relationship: part_of UBERON:0001037 ! hair
[Term]
id: UBERON:0002078
name: right atrium
alt_id: UBERON:FMA_7096-MA_0000075
def: "Right cardiac chamber which is continuous with the superior vena cava and inferior vena cava." [Wikipedia:Right_atrium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "heart right atrium" EXACT []
synonym: "Right atrium" EXACT []
synonym: "Right atrium of heart" EXACT []
synonym: "right atrium of heart" EXACT []
xref: BTO:0001703
xref: FMA:7096
xref: HOG:0000328
xref: MA:0000075
xref: ncithesaurus:Right_Atrium
xref: OpenCyc:Mx4runNcs6fqEdudWQACs5b6Bw
is_a: UBERON:0002081 ! cardiac atrium
[Term]
id: UBERON:0002079
name: left atrium
alt_id: UBERON:FMA_7097-MA_0000074
def: "Left cardiac chamber which is continuous with the pulmonary venous trunk." [Wikipedia:Left_atrium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "heart left atrium" EXACT []
synonym: "Left atrium" EXACT []
synonym: "Left atrium of heart" EXACT []
synonym: "left atrium of heart" EXACT []
xref: BTO:0001702
xref: FMA:7097
xref: galen:LeftAtrium
xref: HOG:0000369
xref: MA:0000074
xref: ncithesaurus:Left_Atrium
xref: OpenCyc:Mx4rkJN1AagEEdudWQACs5b6Bw
is_a: UBERON:0002081 ! cardiac atrium
[Term]
id: UBERON:0002080
name: right ventricle
alt_id: UBERON:FMA_7098-MA_0000093
def: "Right cardiac chamber which is continuous with the pulmonary arterial trunk." [Wikipedia:Right_ventricle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "heart right ventricle" EXACT []
synonym: "Right ventricle" EXACT []
synonym: "Right ventricle of heart" EXACT []
synonym: "right ventricle of heart" EXACT []
xref: BTO:0001630
xref: FMA:7098
xref: HOG:0000717
xref: MA:0000093
xref: ncithesaurus:Right_Ventricle
xref: OpenCyc:Mx4rRMlc0KgNEdudWQACs5b6Bw
is_a: UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0002081
name: cardiac atrium
alt_id: UBERON:FMA_7099-MA_0000073
def: "Cardiac chamber which consists of a wall that surrounds the cavity of an atrium." [Wikipedia:Heart_atrium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Atrium of heart" EXACT []
synonym: "atrium of heart" EXACT []
synonym: "Cardiac atrium" EXACT []
synonym: "heart atrium" EXACT []
xref: EFO:0000314
xref: FMA:7099
xref: GAID:555
xref: HOG:0000175
xref: MA:0000073
xref: ncithesaurus:Cardiac_Atrium
xref: TAO:0000471
xref: ZFA:0000471
is_a: UBERON:0001050 ! atrium
intersection_of: UBERON:0001050 ! atrium
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002082
name: cardiac ventricle
alt_id: UBERON:FMA_7100-MA_0000091-ZFA_0000009
def: "Cardiac chamber which consists of a wall that surrounds the cavity of a ventricle. // One of four heart chambers." [Wikipedia:Cardiac_ventricle, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cardiac ventricle" EXACT []
synonym: "heart ventricle" EXACT []
synonym: "Lower chamber of heart" EXACT []
synonym: "lower chamber of heart" EXACT []
synonym: "ventricle" RELATED []
synonym: "Ventricle of heart" EXACT []
synonym: "ventricle of heart" EXACT []
xref: BTO:0000862
xref: FMA:7100
xref: GAID:568
xref: HOG:0000435
xref: MA:0000091
xref: ncithesaurus:Cardiac_Ventricle
xref: OpenCyc:Mx4rvVjj1pwpEbGdrcN5Y29ycA
xref: TAO:0000009
xref: ZFA:0000009
is_a: UBERON:0002300 ! ventricle
intersection_of: UBERON:0002300 ! ventricle
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002083
name: ductus venosus
alt_id: UBERON:FMA_71007-MA_0002111
def: "." [Wikipedia:Ductus_venosus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ductus venosus" EXACT []
xref: EHDAA:5402
xref: FMA:71007
xref: HOG:0000924
xref: MA:0002111
xref: ncithesaurus:Ductus_Venosus
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0002084
name: left ventricle
alt_id: UBERON:FMA_7101-MA_0000092
def: "Left cardiac chamber which is continuous with the aorta." [Wikipedia:Left_ventricle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "heart left ventricle" EXACT []
synonym: "Left ventricle" EXACT []
synonym: "Left ventricle of heart" EXACT []
synonym: "left ventricle of heart" EXACT []
xref: BTO:0001629
xref: FMA:7101
xref: galen:LeftVentricle
xref: HOG:0000718
xref: MA:0000092
xref: ncithesaurus:Left_Ventricle
xref: OpenCyc:Mx4rtW8v46gEEdudWQACs5b6Bw
is_a: UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0002085
name: interatrial septum
alt_id: UBERON:FMA_7108-MA_0000084
def: "Cardiac septum which separates the right atrium from the left atrium." [Wikipedia:Interatrial_septum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "atrial septum" EXACT []
synonym: "Interatrial septal wall" EXACT []
synonym: "interatrial septal wall" EXACT []
synonym: "Interatrial septum" EXACT []
xref: EHDAA:1896
xref: FMA:7108
xref: galen:InteratrialSeptum
xref: HOG:0000385
xref: MA:0000084
xref: ncithesaurus:Interatrial_Septum
xref: OpenCyc:Mx4rpd49nLYEEduAAAACs2IKfQ
is_a: UBERON:0002099 ! cardiac septum
[Term]
id: UBERON:0002086
name: sinoatrial valve
alt_id: UBERON:FMA_71120-ZFA_0000680
comment: This class was created automatically from a combination of ontologies
synonym: "Sinoatrial valve" EXACT []
xref: FMA:71120
xref: TAO:0000680
xref: ZFA:0000680
is_a: UBERON:0000946 ! cardial valve
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0002062 ! endocardial cushion
relationship: part_of UBERON:0002063 ! sinus venosus
relationship: part_of UBERON:0002081 ! cardiac atrium
[Term]
id: UBERON:0002087
name: atrioventricular canal
alt_id: UBERON:FMA_71121-ZFA_0001315
def: "The part of the heart connecting the atrium to the cardiac ventricle[ZFA]. In the developing heart, the constriction between the atrium and ventricle constitutes the atrial canal, and indicates the site of the future atrioventricular valves[WP]." [Wikipedia:Atrioventricular_canal, ZFA:0001315]
subset: uberon_slim
synonym: "AV canal" EXACT []
xref: FMA:71121
xref: HOG:0001473
xref: TAO:0001315
xref: ZFA:0001315
is_a: UBERON:0002050 ! embryonic structure
relationship: connects UBERON:0002081 ! cardiac atrium
relationship: connects UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002088
name: lateral thoracic vein
alt_id: UBERON:FMA_71210-MA_0002162
def: "." [Wikipedia:Lateral_thoracic_vein]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lateral thoracic vein" EXACT []
xref: FMA:71210
xref: MA:0002162
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002089
name: thoracodorsal vein
alt_id: UBERON:FMA_71213-MA_0002238
comment: This class was created automatically from a combination of ontologies
synonym: "Thoracodorsal vein" EXACT []
xref: FMA:71213
xref: MA:0002238
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002090
name: axial skeleton
alt_id: UBERON:FMA_71221-MA_0000308-MIAA_0000148-XAO_0003073-ZFA_0000317
def: "*Subdivision of skeleton which consists of the bones of the vertebral column, the thoracic cage and the pelvis. // The post-cranial structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins." [Wikipedia:Axial_skeleton, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Axial skeleton" EXACT []
synonym: "postcranial axia skelton" RELATED []
synonym: "postcranial axial skeleton" EXACT []
synonym: "vertebral column" RELATED []
xref: AAO:0000034
xref: EHDAA:5049
xref: FMA:71221
xref: HOG:0000317
xref: MA:0000308
xref: MAT:0000148
xref: MIAA:0000148
xref: ncithesaurus:Axial_Skeleton
xref: TAO:0000317
xref: XAO:0003073
xref: ZFA:0000317
is_a: UBERON:0000075 ! subdivision of skeleton
relationship: develops_from UBERON:0003089 ! sclerotome
[Term]
id: UBERON:0002091
name: appendicular skeleton
alt_id: UBERON:FMA_71222-MA_0000290-MIAA_0000278-ZFA_0000027
def: "*Subdivision of skeleton which consists of the bones of the upper and lower limbs." [Wikipedia:Appendicular_skeleton]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Appendicular skeleton" EXACT []
synonym: "paired fin skeleton" EXACT []
xref: AAO:0000747
xref: EFO:0000951
xref: FMA:71222
xref: MA:0000290
xref: MAT:0000278
xref: MIAA:0000278
xref: ncithesaurus:Appendicular_Skeleton
xref: TAO:0000027
xref: XAO:0003166
xref: ZFA:0000027
is_a: UBERON:0000075 ! subdivision of skeleton
intersection_of: UBERON:0000075 ! subdivision of skeleton
intersection_of: has_part UBERON:0002428 ! limb bone
[Term]
id: UBERON:0002092
name: cranial dura mater
alt_id: UBERON:FMA_71236-MA_0000815
comment: This class was created automatically from a combination of ontologies
synonym: "brain dura mater" EXACT []
synonym: "Cranial dura mater" EXACT []
synonym: "Dura mater of brain" EXACT []
synonym: "dura mater of brain" EXACT []
xref: FMA:71236
xref: HOG:0000270
xref: MA:0000815
xref: ncithesaurus:Cerebral_Dura_Mater
is_a: UBERON:0002363 ! dura mater
is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002093
name: spinal dura mater
alt_id: UBERON:FMA_71237-MA_0001132
comment: This class was created automatically from a combination of ontologies
synonym: "Dura mater of spinal cord" EXACT []
synonym: "dura mater of spinal cord" EXACT []
synonym: "spinal cord dura mater" EXACT []
synonym: "Spinal dura mater" EXACT []
xref: FMA:71237
xref: HOG:0000411
xref: MA:0001132
xref: ncithesaurus:Spinal_Cord_Dura_Mater
is_a: UBERON:0002363 ! dura mater
is_a: UBERON:0003292 ! implied link automatically realized ! meninges of spinal cord
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002094
name: interventricular septum
alt_id: UBERON:FMA_7133-MA_0000085
def: "Cardiac septum which separates the right ventricle from the left ventricle." [Wikipedia:Interventricular_septum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Interventricular septum" EXACT []
synonym: "ventricular septum" EXACT []
xref: BTO:0002483
xref: EFO:0001956
xref: EHDAA:2603
xref: FMA:7133
xref: galen:InterventricularSeptum
xref: HOG:0000386
xref: MA:0000085
xref: ncithesaurus:Interventricular_Septum
is_a: UBERON:0002099 ! cardiac septum
[Term]
id: UBERON:0002095
name: mesentery
alt_id: UBERON:FMA_7144-XAO_0000138-ZFA_0005129
def: "Anatomical organ component composed of a double layer of serous membrane that suspends a viscus from the body wall or connects adjacent viscera and in doing so conveys blood vessels, lymphatics and nerves to and from the viscera. Examples: greater omentum, broad ligament of uterus, sigmoid mesocolon. // A double layer composed of peritoneum that attaches the visceral organs to the body wall." [Wikipedia:Mesentery, ZFIN:curator]
comment: TODO - check. Consider FMA:259286 - Region of mesentery
subset: uberon_slim
synonym: "Mesentery" EXACT []
xref: BTO:0001380
xref: EHDAA:2943
xref: EHDAA:2999
xref: EHDAA:3017
xref: EHDAA:3031
xref: EHDAA:3838
xref: EHDAA:3919
xref: EHDAA:3932
xref: EHDAA:3945
xref: EHDAA:3955
xref: EHDAA:3969
xref: EHDAA:432
xref: FMA:7144
xref: GAID:21
xref: ncithesaurus:Mesentery
xref: TAO:0005129
xref: XAO:0000138
xref: ZFA:0005129
is_a: UBERON:0000042 ! serous membrane
relationship: part_of UBERON:0002358 ! peritoneum
[Term]
id: UBERON:0002096
name: lymphatic system
alt_id: UBERON:FMA_7162-ZFA_0000385
def: "." [Wikipedia:Lymphatic_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lymphatic system" EXACT []
synonym: "Lymphatic tree system" EXACT []
synonym: "lymphatic tree system" EXACT []
xref: EFO:0000870
xref: EHDAA:8677
xref: FMA:7162
xref: GAID:931
xref: HOG:0000842
xref: MAT:0000197
xref: MIAA:0000197
xref: ncithesaurus:Lymphatic_System
xref: TAO:0000385
xref: ZFA:0000385
is_a: UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0002097
name: skin
alt_id: UBERON:FMA_7163-MA_0000151-MIAA_0000284-XAO_0000023
def: "Nonparenchymatous organ that consists of the dermis and epidermis. Subdivisions of the skin surround various body parts; as a whole, the skin constitutes the external layer of the body. Examples: There is only one skin. // Surface structure that consists of the external membranous integument of the animal." [OMD:skin, Wikipedia:Skin]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "integument" RELATED []
synonym: "Skin" EXACT []
xref: BTO:0001253
xref: EFO:0000962
xref: EHDAA:6530
xref: FMA:7163
xref: GAID:933
xref: HOG:0000860
xref: MA:0000151
xref: MAT:0000284
xref: MIAA:0000284
xref: ncithesaurus:Skin
xref: OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA
xref: XAO:0000023
is_a: UBERON:0003102 ! surface structure
relationship: part_of UBERON:0002199 ! integument
[Term]
id: UBERON:0002098
name: apex of heart
alt_id: UBERON:FMA_7164-MA_0000488
def: "." [Wikipedia:Apex_of_heart]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Apex of heart" EXACT []
synonym: "Cardiac apex" EXACT []
synonym: "cardiac apex" EXACT []
synonym: "heart apex" EXACT []
xref: FMA:7164
xref: MA:0000488
is_a: UBERON:0000015 ! anatomical boundary
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002099
name: cardiac septum
alt_id: UBERON:FMA_7180-MA_0000083
def: "Septum of organ which has as its parts the membranous and muscular parts that separates the right side of the heart from the left side of the heart." [Wikipedia:Heart_septum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cardiac septum" EXACT []
synonym: "heart septum" EXACT []
synonym: "Septum of heart" EXACT []
synonym: "septum of heart" EXACT []
xref: FMA:7180
xref: GAID:562
xref: MA:0000083
xref: ncithesaurus:Heart_Septum
is_a: UBERON:0003037 ! septum
intersection_of: UBERON:0003037 ! septum
intersection_of: part_of UBERON:0000948 ! heart
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002100
name: trunk
alt_id: UBERON:FMA_7181-MIAA_0000296-XAO_0003025-ZFA_0001115
def: "Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the ribcage, thoracic and lumbar vertebral column, sacrum and coccyx, it is partially surrounded by skin of trunk. Examples: There is only one trunk. // Organism subdivision that is the part of the body posterior to the head and anterior to the tail. // Organism subdivision which is the part of the body posterior to the head and anterior to the tail." [Wikipedia:Torso, ZFA:0001115, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Torso" EXACT []
synonym: "torso" EXACT []
synonym: "Trunk" EXACT []
xref: BILA:0000116
xref: BTO:0001493
xref: EFO:0000966
xref: FMA:7181
xref: MA:0000004
xref: MAT:0000296
xref: MIAA:0000296
xref: ncithesaurus:Trunk
xref: OpenCyc:Mx4rvVkJjpwpEbGdrcN5Y29ycA
xref: TAO:0001115
xref: XAO:0003025
xref: ZFA:0001115
is_a: UBERON:0000475 ! organism subdivision
relationship: has_part UBERON:0000915 ! thorax
relationship: has_part UBERON:0000916 ! abdomen
[Term]
id: UBERON:0002101
name: limb
alt_id: UBERON:FMA_7182-MA_0000007-MIAA_0000090-XAO_0003027
def: "A jointed or prehensible appendage used for locomotion or manipulation. Examples: human arm, human leg, octopus tentacle, insect limb[Wikipedia]. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin[GO]." [GO:0035108, Wikipedia:Limb_(anatomy)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "extremity" RELATED []
synonym: "Limb" EXACT []
xref: BTO:0001492
xref: EFO:0000876
xref: EHDAA:1697
xref: EHDAA:8273
xref: FMA:7182
xref: GAID:36
xref: galen:Extremity
xref: HOG:0000336
xref: MA:0000007
xref: MAT:0000090
xref: MIAA:0000090
xref: ncithesaurus:Limb
xref: XAO:0003027
is_a: UBERON:0000026 ! appendage
[Term]
id: UBERON:0002102
name: forelimb
alt_id: UBERON:FMA_7183-MA_0000025-MIAA_0000394-XAO_0003030
def: "anterior-most limb on a body." [BTO:0001729, ISBN:0471209627, Wikipedia:Forelimb]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anteriormost limb" EXACT []
synonym: "Fore limb" EXACT []
synonym: "fore limb" EXACT []
synonym: "foreleg" RELATED []
synonym: "Forelimb" EXACT []
synonym: "forelimb" EXACT []
synonym: "Superior member" EXACT []
synonym: "superior member" EXACT []
synonym: "Upper extremity" EXACT []
synonym: "upper extremity" EXACT []
synonym: "Upper limb" EXACT []
synonym: "upper limb" RELATED []
xref: AAO:0000205
xref: BTO:0001729
xref: EFO:0000882
xref: EHDAA:6208
xref: FMA:7183
xref: GAID:1215
xref: GAID:51
xref: HOG:0000338
xref: MA:0000025
xref: MAT:0000394
xref: MIAA:0000394
xref: ncithesaurus:Upper_Extremity
xref: XAO:0003030
is_a: UBERON:0002101 ! limb
relationship: anterior_to UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0002103
name: hindlimb
alt_id: UBERON:FMA_7184-MA_0000026-MIAA_0000395-XAO_0003031
def: "A posterior limb on an animal." [ISBN:0471209627, Wikipedia:Lower_limb]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hind limb" EXACT []
synonym: "hind limb" EXACT []
synonym: "Hindlimb" EXACT []
synonym: "hindlimb" EXACT []
synonym: "Inferior member" EXACT []
synonym: "inferior member" EXACT []
synonym: "Lower extremity" EXACT []
synonym: "lower extremity" EXACT []
synonym: "Lower limb" EXACT []
synonym: "lower limb" RELATED []
xref: AAO:0000219
xref: BTO:0002345
xref: EFO:0000883
xref: EHDAA:6094
xref: FMA:7184
xref: GAID:1221
xref: GAID:38
xref: HOG:0000337
xref: MA:0000026
xref: MAT:0000395
xref: MIAA:0000395
xref: ncithesaurus:Lower_Extremity
xref: XAO:0003031
is_a: UBERON:0002101 ! limb
[Term]
id: UBERON:0002104
name: visual system
alt_id: UBERON:FMA_7191-MA_0002444-ZFA_0001127
def: "." [Wikipedia:Visual_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Visual organ system" EXACT []
synonym: "visual organ system" EXACT []
synonym: "Visual system" EXACT []
xref: AAO:0000632
xref: FMA:7191
xref: MA:0002444
xref: ncithesaurus:Visual_System
xref: OpenCyc:Mx4rvViCtpwpEbGdrcN5Y29ycA
xref: TAO:0001127
xref: ZFA:0001127
is_a: UBERON:0001032 ! sense organ system
relationship: disconnected_from UBERON:0002105 ! auditory system
[Term]
id: UBERON:0002105
name: auditory system
alt_id: UBERON:FMA_7192-MA_0002443
def: "A sensory system for the sense of hearing[WP]." [Wikipedia:Auditory_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Auditory organ system" EXACT []
synonym: "auditory organ system" EXACT []
synonym: "Auditory system" EXACT []
synonym: "auditory system" RELATED []
synonym: "auditory/vestibular system" RELATED []
synonym: "Vestibulo-auditory system" EXACT []
synonym: "vestibulo-auditory system" EXACT []
synonym: "vestibuloauditory system" EXACT []
synonym: "vestibuloauditory system" RELATED []
xref: AAO:0000631
xref: FMA:7192
xref: FMA:78500
xref: MA:0002443
xref: ncithesaurus:Auditory_System
xref: OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA
xref: TAO:0001138
xref: ZFA:0001138
is_a: UBERON:0001032 ! sense organ system
[Term]
id: UBERON:0002106
name: spleen
alt_id: UBERON:FMA_7196-MA_0000141-MIAA_0000085-XAO_0000328-ZFA_0000436
def: "Organ found in virtually all vertebrate animals with important roles in regard to red blood cells and the immune system.[1] In humans, it is located in the left upper quadrant of the abdomen. It removes old red blood cells and holds a reserve in case of hemorrhagic shock, especially in animals like horses (not in humans), while recycling iron.[2] It synthesizes antibodies in its white pulp and removes, from blood and lymph node circulation, antibody-coated bacteria along with antibody-coated blood cells." [Wikipedia:Spleen]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Spleen" EXACT []
xref: BTO:0001281
xref: EFO:0000869
xref: FMA:7196
xref: GAID:1289
xref: HOG:0000120
xref: MA:0000141
xref: MAT:0000085
xref: MIAA:0000085
xref: ncithesaurus:Spleen
xref: OpenCyc:Mx4rvVjgw5wpEbGdrcN5Y29ycA
xref: TAO:0000436
xref: XAO:0000328
xref: ZFA:0000436
is_a: UBERON:0002075 ! viscus
relationship: develops_from UBERON:0001048 ! primordium
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0001007 ! digestive system
relationship: part_of UBERON:0002323 ! body cavity
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0002405 ! immune system
[Term]
id: UBERON:0002107
name: liver
alt_id: UBERON:FMA_7197-MA_0000358-MIAA_0000097-XAO_0000133-ZFA_0000123
def: "Vascular, glandular internal organ that secretes bile and causes important changes in many of the substances contained in the blood. // Lobular organ the parenchyma of which consists of lobules which communicate with the biliary tree[FMA]" [BTO:0000759, Wikipedia:Liver]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Liver" EXACT []
xref: BTO:0000759
xref: EFO:0000887
xref: EHDAA:2197
xref: FMA:7197
xref: GAID:288
xref: HOG:0000257
xref: MA:0000358
xref: MAT:0000097
xref: MIAA:0000097
xref: ncithesaurus:Liver
xref: OpenCyc:Mx4rvVimppwpEbGdrcN5Y29ycA
xref: TAO:0000123
xref: XAO:0000133
xref: ZFA:0000123
is_a: UBERON:0002075 ! viscus
relationship: develops_from UBERON:0000925 ! endoderm
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0002405 ! immune system
relationship: part_of UBERON:0002423 ! hepatobiliary system
[Term]
id: UBERON:0002108
name: small intestine
alt_id: UBERON:FMA_7200-MA_0000337-MIAA_0000047-XAO_0000130-ZFA_0001323
def: "Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine. Examples: There is only one small intestine. // The passage from the posterior intestine, from the rectal valve to the opening to the exterior. // The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005." [WA:dh, Wikipedia:Small_intestine, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior intestine" RELATED []
synonym: "mid intestine" RELATED []
synonym: "Small bowel" EXACT []
synonym: "small bowel" EXACT []
synonym: "Small intestine" EXACT []
synonym: "small intestine" EXACT []
xref: BTO:0000651
xref: EFO:0000841
xref: FMA:7200
xref: GAID:313
xref: HOG:0000055
xref: MA:0000337
xref: MAT:0000047
xref: MIAA:0000047
xref: ncithesaurus:Small_Intestine
xref: OpenCyc:Mx4rvVjlIJwpEbGdrcN5Y29ycA
xref: TAO:0001323
xref: XAO:0000130
xref: ZFA:0001323
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001008 ! urinary system
relationship: part_of UBERON:0001555 ! gut
[Term]
id: UBERON:0002109
name: set of nares
alt_id: UBERON:FMA_72005-ZFA_0000550
def: "." [Wikipedia:Nares]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Nares" EXACT []
synonym: "nares" RELATED []
synonym: "Nares set" EXACT []
synonym: "nares set" EXACT []
synonym: "naris" EXACT []
synonym: "Nostrils" EXACT []
synonym: "nostrils" EXACT []
synonym: "Set of nares" EXACT []
xref: AAO:0000311
xref: EHDAA:9083
xref: FMA:72005
xref: HOG:0000663
xref: MA:0000282
xref: ncithesaurus:Nostril
xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA
xref: TAO:0000550
xref: ZFA:0000550
is_a: UBERON:0003102 ! surface structure
relationship: part_of UBERON:0000004 ! olfactory apparatus
[Term]
id: UBERON:0002110
name: gallbladder
alt_id: UBERON:FMA_7202-MA_0000356-MIAA_0000072-XAO_0000135-ZFA_0000208
def: "Organ with organ cavity which is continuous proximally with the cystic duct and distally terminates in the fundus of the gallbladder. Examples: There is only one gallbladder." [Wikipedia:Gallbladder]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Gall bladder" EXACT []
synonym: "gall bladder" EXACT []
synonym: "Gallbladder" EXACT []
xref: BTO:0000493
xref: EFO:0000853
xref: EHDAA:8062
xref: FMA:7202
xref: galen:Gallbladder
xref: HOG:0000221
xref: MA:0000356
xref: MAT:0000072
xref: MIAA:0000072
xref: ncithesaurus:Gallbladder
xref: OpenCyc:Mx4rvVkGr5wpEbGdrcN5Y29ycA
xref: TAO:0000208
xref: XAO:0000135
xref: ZFA:0000208
is_a: UBERON:0002075 ! viscus
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0002294 ! biliary system
relationship: part_of UBERON:0002323 ! body cavity
[Term]
id: UBERON:0002111
name: smooth muscle of artery
alt_id: UBERON:FMA_72024-MA_0000708
comment: This class was created automatically from a combination of ontologies
synonym: "artery smooth muscle" EXACT []
synonym: "Smooth muscle of artery" EXACT []
xref: BTO:0000087
xref: FMA:72024
xref: MA:0000708
is_a: UBERON:0001135 ! smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001637 ! artery
relationship: part_of UBERON:0001637 ! artery
[Term]
id: UBERON:0002112
name: smooth muscle of esophagus
alt_id: UBERON:FMA_72025-MA_0001573
comment: This class was created automatically from a combination of ontologies
synonym: "esophagus smooth muscle" EXACT []
synonym: "oesophagus smooth muscle" RELATED []
synonym: "Smooth muscle of esophagus" EXACT []
xref: FMA:72025
xref: MA:0001573
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0002113
name: kidney
alt_id: UBERON:FMA_7204-MA_0001683
alt_id: UBERON:FMA_7205-MA_0001655
def: "A paired organ which has the production of urine as its primary function." [Wikipedia:Kidney]
subset: uberon_slim
synonym: "Kidney" EXACT []
synonym: "kidney" EXACT []
synonym: "Left kidney" EXACT []
synonym: "left kidney" EXACT []
synonym: "Right kidney" EXACT []
synonym: "right kidney" EXACT []
xref: AAO:0000250
xref: BTO:0000671
xref: EFO:0000929
xref: FMA:7203
xref: GAID:423
xref: galen:Kidney
xref: MA:0000368
xref: MAT:0000119
xref: MIAA:0000118
xref: MIAA:0000119
xref: ncithesaurus:Kidney
xref: OpenCyc:Mx4rvVjlYpwpEbGdrcN5Y29ycA
xref: TAO:0000529
is_a: UBERON:0000489 ! cavitated compound organ
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0002114
name: duodenum
alt_id: UBERON:FMA_7206-MA_0000338-MIAA_0000044-XAO_0000236
def: "The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Duodenum" EXACT []
xref: BTO:0000365
xref: EFO:0000851
xref: EHDAA:3830
xref: EHDAA:3937
xref: FMA:7206
xref: GAID:284
xref: galen:Duodenum
xref: HOG:0000052
xref: MA:0000338
xref: MAT:0000044
xref: MIAA:0000044
xref: ncithesaurus:Duodenum
xref: OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA
xref: XAO:0000236
is_a: UBERON:0002108 ! small intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0002115
name: jejunum
alt_id: UBERON:FMA_7207-MA_0000340-MIAA_0000045
def: "." [Wikipedia:Jejunum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Jejunum" EXACT []
xref: BTO:0000657
xref: EFO:0001333
xref: FMA:7207
xref: GAID:318
xref: galen:Jejunum
xref: HOG:0000053
xref: MA:0000340
xref: MAT:0000045
xref: MIAA:0000045
xref: ncithesaurus:Jejunum
is_a: UBERON:0002108 ! small intestine
[Term]
id: UBERON:0002116
name: ileum
alt_id: UBERON:FMA_7208-MA_0000339-MIAA_0000282-XAO_0000237
def: "." [Wikipedia:Ileum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ileum" EXACT []
xref: BTO:0000620
xref: EFO:0001334
xref: FMA:7208
xref: GAID:315
xref: galen:Ileum
xref: HOG:0000647
xref: MA:0000339
xref: MAT:0000282
xref: MIAA:0000282
xref: ncithesaurus:Ileum
xref: OpenCyc:Mx4rvdcLHZwpEbGdrcN5Y29ycA
xref: XAO:0000237
is_a: UBERON:0002108 ! small intestine
relationship: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0002117
name: testicle
alt_id: UBERON:FMA_7211-MA_0001747
alt_id: UBERON:FMA_7212-MA_0001746
def: "." [Wikipedia:Testicle]
comment: TODO: add subtypes, L/R
subset: uberon_slim
synonym: "Left testicle" EXACT []
synonym: "left testicle" EXACT []
synonym: "Left testis" EXACT []
synonym: "left testis" EXACT []
synonym: "Right testicle" EXACT []
synonym: "right testicle" EXACT []
synonym: "Right testis" EXACT []
synonym: "right testis" EXACT []
xref: EFO:0000984
xref: FMA:7211
xref: FMA:7212
xref: MA:0001746
xref: MA:0001747
xref: ncithesaurus:Left_Testis
xref: OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA
is_a: UBERON:0000473 ! testis
relationship: part_of UBERON:0000473 ! testis
[Term]
id: UBERON:0002118
name: right ovary
alt_id: UBERON:FMA_7213-MA_0001705
comment: This class was created automatically from a combination of ontologies
synonym: "Right ovary" EXACT []
xref: FMA:7213
xref: MA:0001705
xref: ncithesaurus:Right_Ovary
is_a: UBERON:0000992 ! ovary
[Term]
id: UBERON:0002119
name: left ovary
alt_id: UBERON:FMA_7214-MA_0001704
comment: This class was created automatically from a combination of ontologies
synonym: "Left ovary" EXACT []
xref: FMA:7214
xref: MA:0001704
xref: ncithesaurus:Left_Ovary
is_a: UBERON:0000992 ! ovary
[Term]
id: UBERON:0002120
name: pronephros
alt_id: UBERON:FMA_72170-MIAA_0000117-XAO_0002000-ZFA_0000151
def: "In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensible for larval life[GO]. // The first kidney in all vertebrates - it is transitional and disappears soon after it has formed. // Organ that serves as a transient kidney, providing osmoregulation during early developmental stages and then degenerating during metamorphosis. // The embryonic kidney, present at the level of the third somite, is composed of two glomeruli fused at the midline, two pronephric tubules, and paired bilateral pronephric ducts that modify the composition of the blood filtrate before delivering it to the cloaca for excretion.Kimmel et al, 1995." [GO:0048793, Wikipedia:Pronephros, XB:curator, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "embryonic kidney" RELATED []
synonym: "pronephric kidney" EXACT []
synonym: "Pronephros" EXACT []
xref: BTO:0001541
xref: EFO:0000927
xref: EHDAA:1017
xref: FMA:72170
xref: HOG:0000037
xref: MAT:0000117
xref: MIAA:0000117
xref: ncithesaurus:Pronephros
xref: TAO:0000151
xref: XAO:0002000
xref: ZFA:0000151
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002113 ! kidney
relationship: develops_from UBERON:0003104 ! mesenchyme
relationship: part_of UBERON:0002323 ! body cavity
[Term]
id: UBERON:0002122
name: capsule of thymus
alt_id: UBERON:FMA_72204-MA_0000766
comment: This class was created automatically from a combination of ontologies
synonym: "Capsule of thymus" EXACT []
synonym: "Thymus capsule" EXACT []
synonym: "thymus capsule" EXACT []
xref: FMA:72204
xref: MA:0000766
is_a: UBERON:0003893 ! capsule
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0002370 ! thymus
relationship: surrounds UBERON:0002370 ! thymus
[Term]
id: UBERON:0002123
name: cortex of thymus
alt_id: UBERON:FMA_72205-MA_0000767
def: "Cortical portion of thymus, mainly composed of lymphoid cells, supported by a network of finely-branched epithelial reticular cells, which is continuous with a similar network in the medullary portion. This network forms an adventitia to the blood vessels. The cortex is the location of the earliest events in thymocyte development, where T cell receptor gene rearrangement and positive selection takes place." [Wikipedia:Thymus#Cortex]
comment: This class was created automatically from a combination of ontologies
synonym: "Cortex of thymus" EXACT []
synonym: "Thymus cortex" EXACT []
synonym: "thymus cortex" EXACT []
xref: FMA:72205
xref: MA:0000767
xref: ncithesaurus:Thymus_Cortex
is_a: UBERON:0001851 ! cortex
intersection_of: UBERON:0001851 ! cortex
intersection_of: part_of UBERON:0002370 ! thymus
relationship: part_of UBERON:0002370 ! thymus
[Term]
id: UBERON:0002124
name: medulla of thymus
alt_id: UBERON:FMA_72206-MA_0000771
def: "Medullary portion of thymus. The reticulum is coarser than in the cortex, the lymphoid cells are relatively fewer in number, and there are found peculiar nest-like bodies, the concentric corpuscles of Hassall. These concentric corpuscles are composed of a central mass, consisting of one or more granular cells, and of a capsule formed of epithelioid cells. They are the remains of the epithelial tubes, which grow out from the third branchial pouches of the embryo to form the thymus. Each follicle is surrounded by a vascular plexus, from which vessels pass into the interior, and radiate from the periphery toward the center, forming a second zone just within the margin of the medullary portion. In the center of the medullary portion there are very few vessels, and they are of minute size." [Wikipedia:Thymus#Medulla]
comment: This class was created automatically from a combination of ontologies
synonym: "Medulla of thymus" EXACT []
synonym: "Thymus medulla" EXACT []
synonym: "thymus medulla" EXACT []
xref: EFO:0001969
xref: FMA:72206
xref: MA:0000771
xref: ncithesaurus:Thymus_Medulla
is_a: UBERON:0000958 ! medulla
intersection_of: UBERON:0000958 ! medulla
intersection_of: part_of UBERON:0002370 ! thymus
relationship: part_of UBERON:0002370 ! thymus
[Term]
id: UBERON:0002125
name: lobule of thymus
alt_id: UBERON:FMA_72215-MA_0000770
comment: This class was created automatically from a combination of ontologies
synonym: "Lobule of thymus" EXACT []
synonym: "Thymus lobule" EXACT []
synonym: "thymus lobule" EXACT []
xref: FMA:72215
xref: MA:0000770
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002370 ! thymus
[Term]
id: UBERON:0002126
name: solitary tract nuclear complex
alt_id: UBERON:FMA_72242-MA_0001052
def: "." [Wikipedia:Nucleus_of_tractus_solitarius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Nuclei of solitary tract" EXACT []
synonym: "nuclei of solitary tract" EXACT []
synonym: "Nucleus of tractus solitarius" EXACT []
synonym: "nucleus of tractus solitarius" EXACT []
synonym: "Solitary nuclei" EXACT []
synonym: "solitary nuclei" EXACT []
synonym: "solitary nucleus" EXACT []
synonym: "Solitary tract nuclear complex" EXACT []
synonym: "solitary tract nucleus" EXACT []
xref: FMA:72242
xref: GAID:593
xref: MA:0001052
xref: ncithesaurus:Solitary_Nucleus
xref: NIF_GrossAnatomy:birnlex_1429
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002127
name: inferior olivary complex
alt_id: UBERON:FMA_72243-MA_0001040-ZFA_0000215
def: "largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements." [Wikipedia:Inferior_olivary_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Inferior olivary complex" EXACT []
synonym: "inferior olivary nuclear complex" EXACT []
synonym: "Inferior olivary nucleus" EXACT []
synonym: "inferior olivary nucleus" EXACT []
synonym: "Inferior olive" EXACT []
synonym: "inferior olive" EXACT []
xref: BTO:0002298
xref: FMA:72243
xref: MA:0001040
xref: NIF_GrossAnatomy:birnlex_1164
xref: TAO:0000215
xref: ZFA:0000215
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
relationship: part_of UBERON:0000128 ! olivary body
[Term]
id: UBERON:0002128
name: superior olivary complex
alt_id: UBERON:FMA_72247-MA_0001026
def: "The superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound[GO]." [Wikipedia:Superior_olivary_complex]
comment: GO -- In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound. -- TODO fix GO def to be the same throughout
subset: uberon_slim
synonym: "superior olivary nuclei" EXACT []
synonym: "superior olivary nucleus" EXACT []
synonym: "superior olive" RELATED []
xref: FMA:72247
xref: MA:0001026
xref: NIF_GrossAnatomy:birnlex_1307
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002129
name: cerebellar cortex
alt_id: UBERON:FMA_72248-MA_0000199
def: "The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function[GO]." [Wikipedia:Cerebellar_cortex]
comment: The circuits in the cerebellar cortex look similar across all classes of vertebrates, including fish, reptiles, birds, and mammals (e.g., Fig. 2). This has been taken as evidence that the cerebellum performs functions important to all vertebrate species. (Wikipedia)
subset: uberon_slim
synonym: "Cerebellar cortex" EXACT []
xref: BTO:0000043
xref: FMA:72248
xref: GAID:596
xref: MA:0000199
xref: ncithesaurus:Cerebellar_Cortex
xref: NIF_GrossAnatomy:birnlex_1566
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002130
name: cerebellar nuclear complex
alt_id: UBERON:FMA_72249-MA_0000203
def: "." [Wikipedia:Cerebellar_nuclei]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Central nuclei" EXACT []
synonym: "central nuclei" EXACT []
synonym: "Cerebellar nuclear complex" EXACT []
synonym: "Cerebellar nuclei" EXACT []
synonym: "cerebellar nuclei" EXACT []
synonym: "Deep cerebellar nuclei" EXACT []
synonym: "deep cerebellar nuclei" EXACT []
synonym: "deep cerebellar nucleus" EXACT []
synonym: "Intracerebellar nuclei" EXACT []
synonym: "intracerebellar nuclei" EXACT []
synonym: "Intrinsic nuclei of cerebellum" EXACT []
synonym: "intrinsic nuclei of cerebellum" EXACT []
synonym: "Roof nuclei-2" EXACT []
synonym: "roof nuclei-2" EXACT []
xref: FMA:72249
xref: GAID:599
xref: MA:0000203
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002131
name: anterior lobe of cerebellum
alt_id: UBERON:FMA_72251-MA_0000991
def: "." [Wikipedia:Anterior_lobe_of_cerebellum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anterior cerebellar lobe" EXACT []
synonym: "anterior cerebellar lobe" EXACT []
synonym: "Anterior lobe of cerebellum" EXACT []
synonym: "cerebellum anterior lobe" EXACT []
xref: FMA:72251
xref: MA:0000991
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex
relationship: part_of UBERON:0002245 ! hemisphere of cerebellum
[Term]
id: UBERON:0002132
name: dentate nucleus
alt_id: UBERON:FMA_72260-MA_0001008
def: "." [Wikipedia:Dentate_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Dentate nucleus" EXACT []
synonym: "lateral cerebellar nucleus" EXACT []
synonym: "Lateral nucleus of cerebellum" EXACT []
synonym: "lateral nucleus of cerebellum" EXACT []
xref: FMA:72260
xref: MA:0001008
xref: NIF_GrossAnatomy:birnlex_1171
is_a: UBERON:0002130 ! cerebellar nuclear complex
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0002130 ! cerebellar nuclear complex
[Term]
id: UBERON:0002133
name: atrioventricular valve
alt_id: UBERON:FMA_7233-ZFA_0005064
def: "Cardiac valve which has as its parts the leaf of cardiac valve that separates the atrium from the ventricle. // The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. Hu et al. 2001." [Wikipedia:Heart_valve#Atrioventricular_valves, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "AV valve" EXACT []
xref: EHDAA:7421
xref: FMA:7233
xref: galen:AtrioventricularValve
xref: HOG:0001472
xref: MA:0002789
xref: OpenCyc:Mx4rfCfdorrpEduAAAACs6hRXg
xref: TAO:0005064
xref: ZFA:0005064
is_a: UBERON:0000946 ! cardial valve
relationship: connects UBERON:0002081 ! cardiac atrium
relationship: connects UBERON:0002082 ! cardiac ventricle
relationship: develops_from UBERON:0002062 ! endocardial cushion
[Term]
id: UBERON:0002134
name: tricuspid valve
alt_id: UBERON:FMA_7234-MA_0000090
def: "Atrioventricular valve which has as its parts the anterior, posterior and septal leaflets, attached to the fibrous ring of tricuspid valve." [Wikipedia:Tricuspid_valve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Right atrioventricular valve" EXACT []
synonym: "right atrioventricular valve" EXACT []
synonym: "Tricuspid valve" EXACT []
xref: EHDAA:7427
xref: FMA:7234
xref: GAID:567
xref: HOG:0000816
xref: MA:0000090
xref: ncithesaurus:Tricuspid_Valve
is_a: UBERON:0002133 ! atrioventricular valve
[Term]
id: UBERON:0002135
name: mitral valve
alt_id: UBERON:FMA_7235-MA_0000088
def: "Atrioventricular valve which has as its parts the anterior and posterior leaflets, attached to the fibrous ring of mitral valve." [Wikipedia:Mitral_valve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bicuspid valve" EXACT []
synonym: "bicuspid valve" RELATED []
synonym: "Left atrioventricular valve" EXACT []
synonym: "left atrioventricular valve" EXACT []
synonym: "Mitral valve" EXACT []
xref: FMA:7235
xref: GAID:565
xref: HOG:0000817
xref: MA:0000088
xref: ncithesaurus:Mitral_Valve
xref: OpenCyc:Mx4rv4l2nJwpEbGdrcN5Y29ycA
is_a: UBERON:0002133 ! atrioventricular valve
[Term]
id: UBERON:0002136
name: hilus of dentate gyrus
alt_id: UBERON:FMA_72358-MA_0000947
comment: This class was created automatically from a combination of ontologies
synonym: "Dentate gyrus hilus" EXACT []
synonym: "dentate gyrus hilus" EXACT []
synonym: "Field CA4 of hippocampal formation" EXACT []
synonym: "field ca4 of hippocampal formation" EXACT []
synonym: "Hilus of dentate gyrus" EXACT []
xref: FMA:72358
xref: MA:0000947
xref: NIF_GrossAnatomy:birnlex_1482
is_a: UBERON:0002744 ! hilum of dentate nucleus
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
is_a: UBERON:0003876 ! implied link automatically realized ! hippocampal region
relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation
[Term]
id: UBERON:0002137
name: aortic valve
alt_id: UBERON:FMA_7236-MA_0000087
def: "Cardiac valve which has as its parts the anterior, right posterior and left posterior cusps, attached to the fibrous ring of aortic valve." [Wikipedia:Aortic_valve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Aortic valve" EXACT []
xref: EHDAA:4410
xref: FMA:7236
xref: GAID:563
xref: galen:AorticValve
xref: HOG:0000815
xref: MA:0000087
xref: ncithesaurus:Aortic_Valve
xref: OpenCyc:Mx4rv5914JwpEbGdrcN5Y29ycA
is_a: UBERON:0000946 ! cardial valve
[Term]
id: UBERON:0002138
name: habenulo-interpeduncular tract
alt_id: UBERON:FMA_72400-ZFA_0000353
comment: This class was created automatically from a combination of ontologies
synonym: "fasciculus retroflexus" EXACT []
synonym: "Habenulo-interpeduncular tract" EXACT []
synonym: "Habenulointerpeduncular fasciculus" EXACT []
synonym: "habenulointerpeduncular fasciculus" EXACT []
synonym: "Habenulointerpeduncular tract" EXACT []
synonym: "habenulointerpeduncular tract" RELATED []
synonym: "Habenulopeduncular tract" EXACT []
synonym: "habenulopeduncular tract" EXACT []
synonym: "Meynert's retroflex bundle" EXACT []
synonym: "meynert's retroflex bundle" EXACT []
xref: FMA:72400
xref: NIF_GrossAnatomy:birnlex_1504
xref: TAO:0000353
xref: ZFA:0000353
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0002139
name: subcommissural organ
alt_id: UBERON:FMA_72414-ZFA_0000683
def: "." [Wikipedia:Subcommissural_organ]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "SCO" RELATED []
synonym: "Subcommissural organ" EXACT []
xref: BTO:0001820
xref: FMA:72414
xref: GAID:794
xref: NIF_GrossAnatomy:birnlex_1028
xref: TAO:0000683
xref: ZFA:0000683
is_a: UBERON:0000481 ! multi-tissue structure
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002140
name: parabigeminal nucleus
alt_id: UBERON:FMA_72415-MA_0001074
comment: This class was created automatically from a combination of ontologies
synonym: "Parabigeminal nucleus" EXACT []
xref: FMA:72415
xref: MA:0001074
xref: NIF_GrossAnatomy:birnlex_1007
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002141
name: parvocellular oculomotor nucleus
alt_id: UBERON:FMA_72424-MA_0001071
def: "." [Wikipedia:Edinger-westphal_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Accessory oculomotor nucleus" EXACT []
synonym: "accessory oculomotor nucleus" EXACT []
synonym: "edinger-westphal nucleus" EXACT []
synonym: "Oculomotor nucleus, parvocellular part" EXACT []
synonym: "oculomotor nucleus, parvocellular part" EXACT []
synonym: "Parvocellular oculomotor nucleus" EXACT []
xref: FMA:72424
xref: MA:0001071
xref: NIF_GrossAnatomy:birnlex_822
xref: ZFA:0000244
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002142
name: pedunculopontine tegmental nucleus
alt_id: UBERON:FMA_72429-MA_0001020
def: "." [Wikipedia:Pedunculopontine_tegmental_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Peduncular pontine nucleus" EXACT []
synonym: "peduncular pontine nucleus" EXACT []
synonym: "Pedunculopontine nucleus" EXACT []
synonym: "pedunculopontine nucleus" EXACT []
synonym: "Pedunculopontine tegmental nucleus" EXACT []
xref: FMA:72429
xref: MA:0001020
xref: NIF_GrossAnatomy:birnlex_1437
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
relationship: part_of UBERON:0000988 ! pons
relationship: part_of UBERON:0002275 ! reticular formation
[Term]
id: UBERON:0002143
name: dorsal tegmental nucleus
alt_id: UBERON:FMA_72434-ZFA_0000346
comment: This class was created automatically from a combination of ontologies
synonym: "Dorsal tegmental nucleus" EXACT []
synonym: "Dorsal tegmental nucleus (Gudden)" EXACT []
synonym: "dorsal tegmental nucleus (gudden)" EXACT []
synonym: "Gudden nucleus" EXACT []
synonym: "gudden nucleus" EXACT []
synonym: "Posterior tegmental nucleus" EXACT []
synonym: "posterior tegmental nucleus" EXACT []
synonym: "von Gudden's nucleus" EXACT []
synonym: "von gudden's nucleus" EXACT []
xref: FMA:72434
xref: MA:0001013
xref: NIF_GrossAnatomy:birnlex_992
xref: TAO:0000346
xref: ZFA:0000346
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002144
name: peripeduncular nucleus
alt_id: UBERON:FMA_72437-MA_0000875
comment: This class was created automatically from a combination of ontologies
synonym: "Peripeduncular nucleus" EXACT []
synonym: "Peripeduncular nucleus of pons" EXACT []
synonym: "peripeduncular nucleus of pons" EXACT []
xref: FMA:72437
xref: MA:0000875
xref: NIF_GrossAnatomy:birnlex_1474
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
relationship: part_of UBERON:0001900 ! subthalamus
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002145
name: interpeduncular nucleus
alt_id: UBERON:FMA_72439-MA_0001069
comment: This class was created automatically from a combination of ontologies
synonym: "Interpeduncular ganglion" EXACT []
synonym: "interpeduncular ganglion" EXACT []
synonym: "Interpeduncular nucleus" EXACT []
xref: FMA:72439
xref: MA:0001069
xref: NIF_GrossAnatomy:birnlex_1000
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002146
name: pulmonary valve
alt_id: UBERON:FMA_7246-MA_0000089
def: "Cardiac valve which has as its parts the right anterior, left anterior and posterior cusps, attached to the fibrous ring of pulmonary valve." [Wikipedia:Pulmonary_valve]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pulmonary valve" EXACT []
synonym: "Pulmonic valve" EXACT []
synonym: "pulmonic valve" EXACT []
xref: EHDAA:4412
xref: FMA:7246
xref: GAID:566
xref: HOG:0000814
xref: MA:0000089
xref: ncithesaurus:Pulmonary_Valve
is_a: UBERON:0000946 ! cardial valve
[Term]
id: UBERON:0002147
name: reticulotegmental nucleus
alt_id: UBERON:FMA_72471-MA_0001025
comment: This class was created automatically from a combination of ontologies
synonym: "reticular tegmental nucleus" EXACT []
synonym: "Reticulotegmental nucleus" EXACT []
synonym: "Reticulotegmental nucleus of pons" EXACT []
synonym: "reticulotegmental nucleus of pons" EXACT []
synonym: "Tegmental reticular nucleus, pontine gray" EXACT []
synonym: "tegmental reticular nucleus, pontine gray" EXACT []
xref: FMA:72471
xref: MA:0001025
xref: NIF_GrossAnatomy:birnlex_882
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
relationship: part_of UBERON:0000988 ! pons
relationship: part_of UBERON:0002275 ! reticular formation
[Term]
id: UBERON:0002148
name: locus ceruleus
alt_id: UBERON:FMA_72478-MA_0001017-ZFA_0000539
def: "The locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic[GO]." [Wikipedia:Locus_ceruleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "caerulean nucleus" EXACT []
synonym: "locus coeruleus" EXACT []
synonym: "nucleus of locus caeruleus" EXACT []
xref: BTO:0001408
xref: EFO:0001963
xref: FMA:72478
xref: GAID:577
xref: MA:0001017
xref: NIF_GrossAnatomy:birnlex_905
xref: TAO:0000539
xref: ZFA:0000539
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002149
name: superior salivatory nucleus
alt_id: UBERON:FMA_72482-MA_0001027
def: "visceromotor cranial nerve nucleus located in the pontine tegmentum." [Wikipedia:Superior_salivatory_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "superior salivary nucleus" EXACT []
synonym: "Superior salivatory nucleus" EXACT []
xref: FMA:72482
xref: MA:0001027
xref: NIF_GrossAnatomy:birnlex_1131
is_a: UBERON:0000126 ! cranial nerve nucleus
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002150
name: superior cerebellar peduncle
alt_id: UBERON:FMA_72495-MA_0002746
def: "." [Wikipedia:Superior_cerebellar_peduncle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Superior cerebellar peduncle" EXACT []
xref: FMA:72495
xref: MA:0002746
xref: NIF_GrossAnatomy:birnlex_1711
is_a: UBERON:0002474 ! cerebellar peduncle
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0002151
name: pontine nuclear group
alt_id: UBERON:FMA_72512-MA_0001021
def: "." [Wikipedia:Pontine_nuclei]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pontine nuclear group" EXACT []
synonym: "Pontine nuclei" EXACT []
synonym: "pontine nuclei" EXACT []
synonym: "pontine nucleus" EXACT []
xref: BTO:0003396
xref: FMA:72512
xref: MA:0001021
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002152
name: middle cerebellar peduncle
alt_id: UBERON:FMA_72515-MA_0002745
def: "." [Wikipedia:Middle_cerebellar_peduncle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Middle cerebellar peduncle" EXACT []
xref: FMA:72515
xref: MA:0002745
xref: NIF_GrossAnatomy:birnlex_1529
xref: NIF_GrossAnatomy:birnlex_1699
is_a: UBERON:0002474 ! cerebellar peduncle
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0002153
name: fastigial nucleus
alt_id: UBERON:FMA_72537-MA_0001009
def: "." [Wikipedia:Fastigial_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Fastigial nucleus" EXACT []
synonym: "Medial (fastigial) nucleus" EXACT []
synonym: "medial (fastigial) nucleus" EXACT []
synonym: "medial cerebellar nucleus" EXACT []
synonym: "Roof nucleus-1" EXACT []
synonym: "roof nucleus-1" EXACT []
xref: FMA:72537
xref: MA:0001009
xref: NIF_GrossAnatomy:birnlex_1146
is_a: UBERON:0002130 ! cerebellar nuclear complex
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0002130 ! cerebellar nuclear complex
[Term]
id: UBERON:0002154
name: lateral reticular nucleus
alt_id: UBERON:FMA_72574-MA_0001047-ZFA_0000535
def: "." [Wikipedia:Lateral_reticular_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lateral reticular nucleus" EXACT []
synonym: "Lateral reticular nucleus (medulla)" EXACT []
synonym: "lateral reticular nucleus (medulla)" EXACT []
xref: FMA:72574
xref: MA:0001047
xref: TAO:0000535
xref: ZFA:0000535
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002155
name: gigantocellular nucleus
alt_id: UBERON:FMA_72576-MA_0001037
def: "." [Wikipedia:Gigantocellular_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Gigantocellular nucleus" EXACT []
synonym: "Gigantocellular reticular nucleus" EXACT []
synonym: "gigantocellular reticular nucleus" EXACT []
xref: FMA:72576
xref: MA:0001037
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002156
name: nucleus raphe magnus
alt_id: UBERON:FMA_72584-MA_0001024
def: "." [Wikipedia:Nucleus_raphe_magnus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Magnus raphe nucleus" EXACT []
synonym: "magnus raphe nucleus" EXACT []
synonym: "Nucleus raphe magnus" EXACT []
synonym: "Raphe magnus nucleus" EXACT []
synonym: "raphe magnus nucleus" EXACT []
xref: FMA:72584
xref: MA:0001024
xref: NIF_GrossAnatomy:birnlex_1363
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002157
name: nucleus raphe pallidus
alt_id: UBERON:FMA_72586-MA_0001051
def: "." [Wikipedia:Nucleus_raphe_pallidus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Nucleus raphe pallidus" EXACT []
synonym: "Pallidal raphe nucleus" EXACT []
synonym: "pallidal raphe nucleus" EXACT []
synonym: "Raphe pallidus nucleus" EXACT []
synonym: "raphe pallidus nucleus" EXACT []
xref: FMA:72586
xref: MA:0001051
xref: NIF_GrossAnatomy:birnlex_1375
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002158
name: principal inferior olivary nucleus
alt_id: UBERON:FMA_72592-MA_0001046
comment: This class was created automatically from a combination of ontologies
synonym: "Chief inferior olivary nucleus" EXACT []
synonym: "chief inferior olivary nucleus" EXACT []
synonym: "Inferior olivary complex, principal olive" EXACT []
synonym: "inferior olivary complex, principal olive" EXACT []
synonym: "inferior olive principal nucleus" EXACT []
synonym: "Inferior olive, principal nucleus" EXACT []
synonym: "inferior olive, principal nucleus" EXACT []
synonym: "Main olivary nucleus" EXACT []
synonym: "main olivary nucleus" EXACT []
synonym: "Principal inferior olivary nucleus" EXACT []
synonym: "Principal nucleus of inferior olive" EXACT []
synonym: "principal nucleus of inferior olive" EXACT []
synonym: "Principal olivary nucleus" EXACT []
synonym: "principal olivary nucleus" EXACT []
xref: FMA:72592
xref: MA:0001046
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002574 ! implied link automatically realized ! regional part of inferior olivary complex
relationship: part_of UBERON:0002127 ! inferior olivary complex
[Term]
id: UBERON:0002159
name: medial accessory inferior olivary nucleus
alt_id: UBERON:FMA_72594-MA_0001045
comment: This class was created automatically from a combination of ontologies
synonym: "Inferior olivary complex, medial accessory olive" EXACT []
synonym: "inferior olivary complex, medial accessory olive" EXACT []
synonym: "inferior olive medial nucleus" EXACT []
synonym: "Inferior olive, medial nucleus" EXACT []
synonym: "inferior olive, medial nucleus" EXACT []
synonym: "Medial accessory inferior olivary nucleus" EXACT []
synonym: "Medial accessory olivary nucleus" EXACT []
synonym: "medial accessory olivary nucleus" EXACT []
xref: FMA:72594
xref: MA:0001045
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002574 ! implied link automatically realized ! regional part of inferior olivary complex
relationship: part_of UBERON:0002127 ! inferior olivary complex
[Term]
id: UBERON:0002160
name: nucleus prepositus
alt_id: UBERON:FMA_72596-MA_0001023
comment: This class was created automatically from a combination of ontologies
synonym: "Nucleus prepositus" EXACT []
synonym: "nucleus prepositus hypoglossus" RELATED []
synonym: "Prepositus hypoglossal nucleus" EXACT []
synonym: "prepositus hypoglossal nucleus" EXACT []
synonym: "Prepositus nucleus" EXACT []
synonym: "prepositus nucleus" EXACT []
xref: FMA:72596
xref: MA:0001023
xref: NIF_GrossAnatomy:birnlex_2652
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002161
name: gracile nucleus
alt_id: UBERON:FMA_72602-MA_0001038
def: "." [Wikipedia:Gracile_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Goll's nucleus" EXACT []
synonym: "goll's nucleus" EXACT []
synonym: "Gracile nucleus" EXACT []
xref: FMA:72602
xref: MA:0001038
xref: NIF_GrossAnatomy:birnlex_2643
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002162
name: area postrema
alt_id: UBERON:FMA_72607-MA_0001034-ZFA_0005146
def: "An area of medulla oblongata, outside the blood-brain barrier. The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation. Ma 1997." [Wikipedia:Area_postrema, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Area postrema" EXACT []
xref: BTO:0003425
xref: FMA:72607
xref: GAID:591
xref: MA:0001034
xref: NIF_GrossAnatomy:birnlex_2636
xref: TAO:0005146
xref: ZFA:0005146
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002163
name: inferior cerebellar peduncle
alt_id: UBERON:FMA_72615-MA_0002744
def: "." [Wikipedia:Inferior_cerebellar_peduncle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Inferior cerebellar peduncle" EXACT []
synonym: "Restiform body" EXACT []
synonym: "restiform body" EXACT []
xref: FMA:72615
xref: MA:0002744
xref: NIF_GrossAnatomy:birnlex_1645
xref: NIF_GrossAnatomy:birnlex_1691
is_a: UBERON:0002474 ! cerebellar peduncle
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002164
name: tectobulbar tract
alt_id: UBERON:FMA_72645-ZFA_0000446
def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the optic tectum towards target cells in the premotor reticulospinal system in the hindbrain." [GO:0034429]
comment: This class was created automatically from a combination of ontologies
synonym: "tecto-bulbar tract" EXACT []
synonym: "Tectobulbar tract" EXACT []
xref: FMA:72645
xref: NIF_GrossAnatomy:birnlex_750
xref: TAO:0000446
xref: ZFA:0000446
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
relationship: part_of UBERON:0000481 ! multi-tissue structure
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002165
name: endocardium
alt_id: UBERON:FMA_7280-XAO_0000066-ZFA_0001320
def: "Tunica intima which has as its parts the endothelium of endocardium and the fibroelastic connective tissue that surrounds the cavity of a cardiac chamber. // Layer that lines the lumen of the heart." [Wikipedia:Endocardium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Endocardium" EXACT []
xref: BTO:0000387
xref: EFO:0000821
xref: FMA:7280
xref: GAID:550
xref: galen:Endocardium
xref: MAT:0000455
xref: ncithesaurus:Endocardium
xref: OpenCyc:Mx4rsWA75K1cEduAAADggVaqvw
xref: TAO:0001320
xref: XAO:0000066
xref: ZFA:0001320
is_a: UBERON:0000479 ! portion of tissue
relationship: develops_from UBERON:0003084 ! fused heart primordium
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002166
name: endocardium of atrium
alt_id: UBERON:FMA_7284-MA_0000077-ZFA_0001614
def: "Endocardium that is part of the atrium." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "Atrial endocardium" EXACT []
synonym: "atrial endocardium" EXACT []
synonym: "atrium endocardium" EXACT []
synonym: "Endocardium of atrium" EXACT []
xref: FMA:7284
xref: HOG:0000606
xref: MA:0000077
xref: ZFA:0001614
is_a: UBERON:0002165 ! endocardium
intersection_of: UBERON:0002165 ! endocardium
intersection_of: part_of UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0002081 ! cardiac atrium
[Term]
id: UBERON:0002167
name: right lung
alt_id: UBERON:FMA_7309-MA_0000426
def: "Lung which consists of the right upper lobe, middle lobe and right lower lobe." [Wikipedia:Right_lung]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Right lung" EXACT []
xref: EHDAA:4969
xref: FMA:7309
xref: HOG:0000301
xref: MA:0000426
xref: ncithesaurus:Right_Lung
is_a: UBERON:0002048 ! lung
[Term]
id: UBERON:0002168
name: left lung
alt_id: UBERON:FMA_7310-MA_0000425
def: "Lung which consists of the left upper lobe and left lower lobe." [Wikipedia:Left_lung]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Left lung" EXACT []
xref: EHDAA:4947
xref: FMA:7310
xref: HOG:0000618
xref: MA:0000425
xref: ncithesaurus:Left_Lung
is_a: UBERON:0002048 ! lung
[Term]
id: UBERON:0002169
name: alveolar sac
alt_id: UBERON:FMA_7317-MA_0000418
def: "." [Wikipedia:Alveolar_sac]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Alveolar sac" EXACT []
synonym: "Sacculus alveolaris" EXACT []
synonym: "sacculus alveolaris" EXACT []
xref: BTO:0000061
xref: FMA:7317
xref: MA:0000418
xref: ncithesaurus:Alveolar_Sac
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0002170
name: upper lobe of right lung
alt_id: UBERON:FMA_7333-MA_0000429
comment: This class was created automatically from a combination of ontologies
synonym: "right lung cranial lobe" EXACT []
synonym: "right lung superior lobe" RELATED []
synonym: "Right upper lobe" EXACT []
synonym: "right upper lobe" EXACT []
synonym: "Right upper lobe of lung" EXACT []
synonym: "right upper lobe of lung" EXACT []
synonym: "Superior lobe of right lung" EXACT []
synonym: "superior lobe of right lung" EXACT []
synonym: "Upper lobe of right lung" EXACT []
xref: FMA:7333
xref: HOG:0000859
xref: MA:0000429
is_a: UBERON:0000101 ! lobe of lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0002171
name: lower lobe of right lung
alt_id: UBERON:FMA_7337-MA_0000428
comment: This class was created automatically from a combination of ontologies
synonym: "Inferior lobe of right lung" EXACT []
synonym: "inferior lobe of right lung" EXACT []
synonym: "Lower lobe of right lung" EXACT []
synonym: "Right lower lobe" EXACT []
synonym: "right lower lobe" EXACT []
synonym: "Right lower lobe of lung" EXACT []
synonym: "right lower lobe of lung" EXACT []
synonym: "right lung caudal lobe" EXACT []
synonym: "right lung inferior lobe" RELATED []
xref: FMA:7337
xref: HOG:0000857
xref: MA:0000428
is_a: UBERON:0000101 ! lobe of lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0002172
name: alveolar atrium
alt_id: UBERON:FMA_7340-MA_0000419
comment: This class was created automatically from a combination of ontologies
synonym: "Alveolar atrium" EXACT []
synonym: "Atrium alveolare" EXACT []
synonym: "atrium alveolare" EXACT []
synonym: "Atrium of alveolus" EXACT []
synonym: "atrium of alveolus" EXACT []
xref: FMA:7340
xref: MA:0000419
is_a: UBERON:0001050 ! atrium
intersection_of: UBERON:0001050 ! atrium
intersection_of: part_of UBERON:0002299 ! alveolus of lung
[Term]
id: UBERON:0002173
name: alveolar duct
alt_id: UBERON:FMA_7341-MA_0000417
def: "." [Wikipedia:Alveolar_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Alveolar duct" EXACT []
xref: FMA:7341
xref: MA:0000417
xref: ncithesaurus:Alveolar_Duct
xref: OpenCyc:Mx4rvXmfV5wpEbGdrcN5Y29ycA
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0002174
name: middle lobe of lung
alt_id: UBERON:FMA_7383-MA_0000430
def: "." [Wikipedia:Middle_lobe_of_right_lung]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Intermediate lobe of right lung" EXACT []
synonym: "intermediate lobe of right lung" EXACT []
synonym: "Middle lobe of lung" EXACT []
synonym: "Middle lobe of right lung" EXACT []
synonym: "middle lobe of right lung" EXACT []
synonym: "right lung middle lobe" EXACT []
synonym: "Right lung, middle lobe" EXACT []
synonym: "right lung, middle lobe" EXACT []
synonym: "Right middle lobe" EXACT []
synonym: "right middle lobe" EXACT []
synonym: "Right middle lobe of lung" EXACT []
synonym: "right middle lobe of lung" EXACT []
xref: FMA:7383
xref: MA:0000430
is_a: UBERON:0000101 ! lobe of lung
relationship: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0002175
name: intermediolateral nucleus
alt_id: UBERON:FMA_73915-MA_0002753
def: "." [Wikipedia:Intermediolateral_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Intermediolateral nucleus" EXACT []
synonym: "Intermediolateral nucleus of spinal cord" EXACT []
synonym: "intermediolateral nucleus of spinal cord" EXACT []
synonym: "spinal cord intermediolateral nucleus" EXACT []
xref: FMA:73915
xref: MA:0002753
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002176
name: lateral cervical nucleus
alt_id: UBERON:FMA_73921-MA_0002755
comment: This class was created automatically from a combination of ontologies
synonym: "Lateral cervical nucleus" EXACT []
xref: FMA:73921
xref: MA:0002755
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord
[Term]
id: UBERON:0002177
name: right main bronchus
alt_id: UBERON:FMA_7395-MA_0001849
def: "." [Wikipedia:Right_main_bronchus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Right bronchus" EXACT []
synonym: "right bronchus" EXACT []
synonym: "Right main bronchus" EXACT []
synonym: "Right principal bronchus" EXACT []
synonym: "right principal bronchus" EXACT []
xref: FMA:7395
xref: MA:0001849
xref: ncithesaurus:Right_Main_Bronchus
is_a: UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0002178
name: left main bronchus
alt_id: UBERON:FMA_7396-MA_0001843
def: "." [Wikipedia:Left_main_bronchus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Left bronchus" EXACT []
synonym: "left bronchus" EXACT []
synonym: "Left main bronchus" EXACT []
synonym: "Left principal bronchus" EXACT []
synonym: "left principal bronchus" EXACT []
xref: FMA:7396
xref: MA:0001843
xref: ncithesaurus:Left_Main_Bronchus
is_a: UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0002179
name: lateral funiculus
alt_id: UBERON:FMA_74000-ZFA_0000533
def: "." [Wikipedia:Lateral_funiculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lateral funiculus" EXACT []
synonym: "Lateral funiculus of spinal cord" EXACT []
synonym: "lateral funiculus of spinal cord" EXACT []
xref: FMA:74000
xref: TAO:0000533
xref: ZFA:0000533
is_a: UBERON:0000122 ! nerve fiber bundle
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002180
name: ventral funiculus
alt_id: UBERON:FMA_74003-ZFA_0000605
def: "." [Wikipedia:Ventral_funiculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anterior funiculus of spinal cord" EXACT []
synonym: "anterior funiculus of spinal cord" EXACT []
synonym: "Ventral funiculus" EXACT []
synonym: "Ventral funiculus of spinal cord" EXACT []
synonym: "ventral funiculus of spinal cord" EXACT []
xref: FMA:74003
xref: TAO:0000605
xref: ZFA:0000605
is_a: UBERON:0000122 ! nerve fiber bundle
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002181
name: substantia gelatinosa
alt_id: UBERON:FMA_74019-MA_0001124
def: "." [Wikipedia:Substantia_gelatinosa]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Central gelatinous substance of spinal cord" EXACT []
synonym: "central gelatinous substance of spinal cord" EXACT []
synonym: "Gelatinous substance of posterior horn of spinal cord" EXACT []
synonym: "gelatinous substance of posterior horn of spinal cord" EXACT []
synonym: "Substantia gelatinosa" EXACT []
xref: FMA:74019
xref: GAID:701
xref: MA:0001124
xref: ncithesaurus:Substantia_Gelatinosa
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord
[Term]
id: UBERON:0002182
name: main bronchus
alt_id: UBERON:FMA_7405-MA_0000438
def: "." [Wikipedia:Main_bronchus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bronchus principalis" EXACT []
synonym: "bronchus principalis" EXACT []
synonym: "Main bronchus" EXACT []
synonym: "Primary bronchus" EXACT []
synonym: "primary bronchus" EXACT []
synonym: "Principal bronchus" EXACT []
synonym: "principal bronchus" EXACT []
xref: EFO:0000932
xref: EHDAA:3072
xref: FMA:7405
xref: HOG:0000370
xref: MA:0000438
xref: ncithesaurus:Main_Bronchus
is_a: UBERON:0002185 ! bronchus
[Term]
id: UBERON:0002183
name: lobar bronchus
alt_id: UBERON:FMA_7406-MA_0000437
def: "The lobar bronchus is the major airway within the respiratory tree that starts by division of the principal bronchi on both sides and ends at the point of its own subdivision into tertiary or segmental bronchi[GO]." [Wikipedia:Lobar_bronchus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lobar bronchus" EXACT []
synonym: "Secondary bronchus" EXACT []
synonym: "secondary bronchus" EXACT []
xref: EHDAA:4955
xref: EHDAA:4963
xref: EHDAA:4977
xref: EHDAA:4985
xref: EHDAA:4993
xref: EHDAA:8175
xref: EHDAA:8187
xref: EHDAA:8203
xref: EHDAA:8213
xref: EHDAA:8225
xref: FMA:7406
xref: MA:0000437
xref: ncithesaurus:Lobar_Bronchus
is_a: UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0002184
name: segmental bronchus
alt_id: UBERON:FMA_7407-MA_0000439
def: "." [Wikipedia:Segmental_bronchus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Segmental bronchus" EXACT []
synonym: "Tertiary bronchus" EXACT []
synonym: "tertiary bronchus" EXACT []
xref: EHDAA:7043
xref: EHDAA:7049
xref: EHDAA:7058
xref: EHDAA:7064
xref: EHDAA:7070
xref: FMA:7407
xref: HOG:0001446
xref: MA:0000439
xref: ncithesaurus:Segmental_Bronchus
is_a: UBERON:0002185 ! bronchus
[Term]
id: UBERON:0002185
name: bronchus
alt_id: UBERON:FMA_7409-MA_0000436-MIAA_0000133-XAO_0000121
def: "The bronchus is the portion of the airway that connects to the lungs[GO]." [Wikipedia:Bronchus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bronchial trunk" EXACT []
synonym: "bronchial trunk" EXACT []
synonym: "Bronchus" EXACT []
synonym: "main bronchus" RELATED []
xref: BTO:0001340
xref: EFO:0000932
xref: FMA:7409
xref: HOG:0000262
xref: MA:0000436
xref: MAT:0000133
xref: MIAA:0000133
xref: ncithesaurus:Bronchus
xref: XAO:0000121
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001558 ! lower respiratory tract
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0002186
name: bronchiole
alt_id: UBERON:FMA_7410-MA_0000422
def: "the first airway branch that no longer contains cartilage; it is a branch of the bronchi[GO]." [Wikipedia:Bronchiole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bronchiole" EXACT []
synonym: "Lobular bronchiole" EXACT []
synonym: "lobular bronchiole" EXACT []
xref: BTO:0002375
xref: EHDAA:8171
xref: EHDAA:8183
xref: EHDAA:8199
xref: EHDAA:8221
xref: FMA:7410
xref: HOG:0000675
xref: MA:0000422
xref: ncithesaurus:Bronchiole
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0002187
name: terminal bronchiole
alt_id: UBERON:FMA_7411-MA_0000424
def: "." [Wikipedia:Terminal_bronchiole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bronchiolus terminalis" EXACT []
synonym: "bronchiolus terminalis" EXACT []
synonym: "Terminal bronchiole" EXACT []
xref: BTO:0003223
xref: FMA:7411
xref: MA:0000424
xref: ncithesaurus:Terminal_Bronchiole
is_a: UBERON:0002186 ! bronchiole
[Term]
id: UBERON:0002188
name: respiratory bronchiole
alt_id: UBERON:FMA_7412-MA_0000423
def: "." [Wikipedia:Respiratory_bronchiole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bronchiolus respiratorius" EXACT []
synonym: "bronchiolus respiratorius" EXACT []
synonym: "Respiratory bronchiole" EXACT []
xref: BTO:0003222
xref: FMA:7412
xref: MA:0000423
xref: ncithesaurus:Respiratory_Bronchiole
is_a: UBERON:0002186 ! bronchiole
[Term]
id: UBERON:0002189
name: outer cortex of kidney
alt_id: UBERON:FMA_74285-MA_0001649
comment: This class was created automatically from a combination of ontologies
synonym: "Outer cortex of kidney" EXACT []
synonym: "Outer renal cortex" EXACT []
synonym: "outer renal cortex" EXACT []
xref: FMA:74285
xref: MA:0001649
is_a: UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0002190
name: subcutaneous adipose tissue
alt_id: UBERON:FMA_74315-MA_0000473
comment: This class was created automatically from a combination of ontologies
synonym: "Fatty layer of subcutaneous tissue" EXACT []
synonym: "fatty layer of subcutaneous tissue" EXACT []
synonym: "Subcutaneous adipose tissue" EXACT []
xref: FMA:74315
xref: MA:0000473
is_a: UBERON:0001013 ! adipose tissue
[Term]
id: UBERON:0002191
name: subiculum
alt_id: UBERON:FMA_74414-MA_0000960
def: "." [Wikipedia:Subiculum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Subiculum" EXACT []
synonym: "Subiculum hippocampi" EXACT []
synonym: "subiculum hippocampi" EXACT []
xref: BTO:0003087
xref: FMA:74414
xref: MA:0000960
xref: ncithesaurus:Subiculum
xref: NIF_GrossAnatomy:birnlex_1305
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0002192
name: choroidal fissure
alt_id: UBERON:FMA_74512-MA_0001305-XAO_0000474-ZFA_0001075
def: "A break in the continuity of the optic cup where the two sides of the cup meet." [ISBN:0815318960]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Chorioid fissure" EXACT []
synonym: "chorioid fissure" EXACT []
synonym: "Choroid fissure" EXACT []
synonym: "choroid fissure" EXACT []
synonym: "Choroidal fissure" EXACT []
xref: EHDAA:4759
xref: FMA:74512
xref: HOG:0000655
xref: MA:0001305
xref: ncithesaurus:Choroidal_Fissure
xref: TAO:0001075
xref: XAO:0000474
xref: ZFA:0001075
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0002193
name: hemolymphoid system
alt_id: UBERON:FMA_74562-MA_0000013
def: "Anatomical cluster consisting of the hematopoietic system and the lymphoid system, or its analogs." []
comment: This class was created automatically from a combination of ontologies
synonym: "Haemolymphoid system" EXACT []
synonym: "haemolymphoid system" RELATED []
synonym: "Hematolymphoid system" EXACT []
synonym: "hematolymphoid system" EXACT []
synonym: "Hemolymphoid system" EXACT []
synonym: "Lymphomyeloid complex" EXACT []
synonym: "lymphomyeloid complex" EXACT []
xref: FMA:74562
xref: MA:0000013
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002194
name: capsule of lymph node
alt_id: UBERON:FMA_74604-MA_0000739
def: "Capsule surrounding lymph node composed of connective tissue with some plain muscle fibers. from its internal surface are given off a number of membranous processes or trabeculae, consisting, in man, of connective tissue, with a small admixture of plain muscle fibers; but in many of the lower animals composed almost entirely of involuntary muscle[WP]." [Wikipedia:Lymph_node_capsule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Capsule of lymph node" EXACT []
synonym: "Lymph node capsule" EXACT []
synonym: "lymph node capsule" EXACT []
xref: FMA:74604
xref: MA:0000739
xref: ncithesaurus:Lymph_Node_Capsule
is_a: UBERON:0003893 ! capsule
intersection_of: UBERON:0003893 ! capsule
intersection_of: surrounds UBERON:0000029 ! lymph node
relationship: has_part UBERON:0002384 ! connective tissue
relationship: surrounds UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002195
name: trabecula of lymph node
alt_id: UBERON:FMA_74605-MA_0000746
def: "Membranous process coming from capsule of lymph node[WP]." [Wikipedia:Lymph_node_trabeculae]
comment: This class was created automatically from a combination of ontologies
synonym: "Lymph node trabecula" EXACT []
synonym: "lymph node trabecula" EXACT []
synonym: "lymph node trabeculum" EXACT []
synonym: "Trabecula of lymph node" EXACT []
xref: FMA:74605
xref: MA:0000746
xref: ncithesaurus:Lymph_Node_Trabecula
is_a: UBERON:0000440 ! trabecula
relationship: part_of UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002196
name: adenohypophysis
alt_id: UBERON:FMA_74627-MA_0000177-ZFA_0001282
def: "The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mamalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish. Herzog et al, 2004." [Wikipedia:Adenohypophysis, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Adenohypophysis" EXACT []
synonym: "Anterior lobe (hypophysis)" EXACT []
synonym: "anterior lobe (hypophysis)" EXACT []
synonym: "Anterior lobe of hypophysis" EXACT []
synonym: "anterior lobe of hypophysis" EXACT []
synonym: "Anterior lobe of pituitary" EXACT []
synonym: "anterior lobe of pituitary" EXACT []
synonym: "Anterior lobe of pituitary gland" EXACT []
synonym: "anterior lobe of pituitary gland" EXACT []
synonym: "anterior pituitary" EXACT []
synonym: "Pituitary gland, anterior lobe" EXACT []
synonym: "pituitary gland, anterior lobe" EXACT []
xref: BTO:0000040
xref: EFO:0000230
xref: FMA:74627
xref: HOG:0000141
xref: MA:0000177
xref: NIF_GrossAnatomy:birnlex_1581
xref: TAO:0001282
xref: ZFA:0001282
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0000007 ! pituitary gland
[Term]
id: UBERON:0002197
name: median eminence of neurohypophysis
alt_id: UBERON:FMA_74634-MA_0000859
def: "." [Wikipedia:Median_eminence]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Median eminence" EXACT []
synonym: "median eminence" EXACT []
synonym: "Median eminence of hypothalamus" EXACT []
synonym: "median eminence of hypothalamus" EXACT []
synonym: "Median eminence of neurohypophysis" EXACT []
synonym: "Median eminence of posterior lobe of pituitary gland" EXACT []
synonym: "median eminence of posterior lobe of pituitary gland" EXACT []
synonym: "Median eminence of tuber cinereum" EXACT []
synonym: "median eminence of tuber cinereum" EXACT []
xref: BTO:0001954
xref: EHDAA:7540
xref: FMA:74634
xref: GAID:463
xref: HOG:0001179
xref: MA:0000859
xref: NIF_GrossAnatomy:birnlex_925
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002198
name: neurohypophysis
alt_id: UBERON:FMA_74636-ZFA_0001271
def: "comprises the posterior lobe of the pituitary gland and is part of the endocrine system[WP]. part of the pituitary gland that secretes hormones involved in blood pressure regulation[GO]." [Wikipedia:Neurohypophysis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "neurohypophysis" EXACT []
synonym: "pituitary gland, posterior lobe" EXACT []
synonym: "posterior lobe of pituitary" EXACT []
synonym: "posterior pituitary" EXACT []
xref: BTO:0000937
xref: EHDAA:7536
xref: FMA:74628
xref: HOG:0000142
xref: MA:0000178
xref: NIF_GrossAnatomy:birnlex_1586
xref: TAO:0001271
xref: ZFA:0001271
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0000007 ! pituitary gland
[Term]
id: UBERON:0002199
name: integument
alt_id: UBERON:FMA_74657-ZFA_0000368
def: "The outer protective barrier that separates the animal from its environment[ZFA]." [Wikipedia:Integument, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Integument" EXACT []
synonym: "skin" RELATED []
xref: AAO:0000239
xref: BTO:0000634
xref: FMA:74657
xref: galen:Integument
xref: HAO:0000421
xref: TAO:0000368
xref: ZFA:0000368
is_a: UBERON:0003102 ! surface structure
relationship: part_of UBERON:0002416 ! integumental system
[Term]
id: UBERON:0002200
name: vasculature of head
alt_id: UBERON:FMA_74710-ZFA_0001267
comment: This class was created automatically from a combination of ontologies
synonym: "cranial vasculature" EXACT []
synonym: "Head vasculature" EXACT []
synonym: "head vasculature" RELATED []
synonym: "Vasculature of head" EXACT []
xref: FMA:74710
xref: TAO:0001267
xref: ZFA:0001267
is_a: UBERON:0002049 ! vasculature
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0002201
name: vasculature of trunk
alt_id: UBERON:FMA_74712-ZFA_0005024
comment: This class was created automatically from a combination of ontologies
synonym: "Trunk vasculature" EXACT []
synonym: "trunk vasculature" EXACT []
synonym: "Vasculature of trunk" EXACT []
xref: FMA:74712
xref: TAO:0005024
xref: ZFA:0005024
is_a: UBERON:0002049 ! vasculature
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0002202
name: submucosa of trachea
alt_id: UBERON:FMA_7472-MA_0001860
comment: This class was created automatically from a combination of ontologies
synonym: "Submucosa of trachea" EXACT []
synonym: "trachea submucosa" EXACT []
synonym: "Tracheal submucosa" EXACT []
synonym: "tracheal submucosa" EXACT []
xref: FMA:7472
xref: MA:0001860
xref: ncithesaurus:Trachea_Submucosa
is_a: UBERON:0000009 ! submucosa
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001005 ! trachea
relationship: part_of UBERON:0001005 ! trachea
[Term]
id: UBERON:0002203
name: vasculature of eye
alt_id: UBERON:FMA_74743-ZFA_0007057
comment: This class was created automatically from a combination of ontologies
synonym: "Eye vasculature" EXACT []
synonym: "eye vasculature" RELATED []
synonym: "ocular vasculature" EXACT []
synonym: "optic vasculature" RELATED []
synonym: "Vasculature of eye" EXACT []
xref: FMA:74743
xref: ZFA:0007057
is_a: UBERON:0002200 ! vasculature of head
intersection_of: UBERON:0002049 ! vasculature
intersection_of: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0002204
name: musculoskeletal system
alt_id: UBERON:FMA_7482-MA_0002418-XAO_0000168
def: "Anatomical system that provides locomotion and physical support to the organism." [Wikipedia:Musculoskeletal_system, XB:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Musculo-skeletal system" EXACT []
synonym: "musculo-skeletal system" EXACT []
synonym: "Musculoskeletal system" EXACT []
xref: FMA:7482
xref: GAID:98
xref: HOG:0001275
xref: MA:0002418
xref: ncithesaurus:Musculoskeletal_System
xref: OpenCyc:Mx4rQRpVNgAKEdyHxgDggVfs8g
xref: XAO:0000168
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0002205
name: manubrium
alt_id: UBERON:FMA_7486-ZFA_0001601
def: "." [Wikipedia:Manubrium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior process" RELATED []
synonym: "horiztonal process" RELATED []
synonym: "Manubrium" EXACT []
synonym: "manubrium incudus" RELATED []
synonym: "Manubrium of sternum" EXACT []
synonym: "manubrium of sternum" EXACT []
xref: AAO:0000680
xref: FMA:7486
xref: GAID:247
xref: OpenCyc:Mx4rvXOLAZwpEbGdrcN5Y29ycA
xref: TAO:0001553
xref: ZFA:0001601
relationship: part_of UBERON:0000975 ! vertebrate sternum
[Term]
id: UBERON:0002206
name: mammillary body
alt_id: UBERON:FMA_74877-MA_0000174
def: "The mammilary body is a protrusion at the posterior end of the hypothalamus that contains hypothalamic nuclei[GO]." [Wikipedia:Mammillary_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Mamillary body" EXACT []
synonym: "mamillary body" EXACT []
synonym: "Mammillary body" EXACT []
xref: FMA:74877
xref: GAID:652
xref: MA:0000174
xref: ncithesaurus:Mamillary_Body
xref: NIF_GrossAnatomy:birnlex_865
xref: ZFA:0000334
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0002207
name: xiphoid process
alt_id: UBERON:FMA_7488-MA_0001884
def: "." [Wikipedia:Xiphoid_process]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "xiphoid cartilage" EXACT []
synonym: "Xiphoid process" EXACT []
synonym: "Xiphoid process of sternum" EXACT []
synonym: "xiphoid process of sternum" EXACT []
xref: FMA:7488
xref: MA:0001884
xref: ncithesaurus:Xiphoid_Process
is_a: UBERON:0002236 ! costal cartilage
relationship: part_of UBERON:0000975 ! vertebrate sternum
[Term]
id: UBERON:0002208
name: sternebra
alt_id: UBERON:FMA_7489-MA_0001333
def: "." [Wikipedia:Sternebra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Sternebra" EXACT []
xref: FMA:7489
xref: MA:0001333
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000975 ! vertebrate sternum
[Term]
id: UBERON:0002209
name: fibrous joint
alt_id: UBERON:FMA_7492-MA_0000321
def: "Nonsynovial joint in which the articulating bones or cartilages are connected by ligaments. Examples: sagittal suture, inferior tibiofibular syndesmosis, gomphosis." [Wikipedia:Fibrous_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Articulatio fibrosa" EXACT []
synonym: "articulatio fibrosa" EXACT []
synonym: "Fibrous joint" EXACT []
xref: FMA:7492
xref: MA:0000321
xref: ZFA:0005156
is_a: UBERON:0000982 ! joint
is_a: UBERON:0003657 ! implied link automatically realized ! limb joint
[Term]
id: UBERON:0002210
name: syndesmosis
alt_id: UBERON:FMA_7494-MA_0001500
def: "Fibrous joint in which the articulating bones or cartilages of the vertebral column and the limbs as well as articulating ossicles, are connected by skeletal ligaments or membranes. Examples: Intervertebral syndesmosis, inferior tibiofibular joint." [Wikipedia:Syndesmosis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Syndesmosis" EXACT []
xref: FMA:7494
xref: MA:0001500
is_a: UBERON:0002209 ! fibrous joint
is_a: UBERON:0002213 ! cartilaginous joint
[Term]
id: UBERON:0002211
name: segment of nerve
alt_id: UBERON:FMA_74941-ZFA_0001328
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Neural segment" EXACT []
synonym: "neural segment" RELATED []
xref: FMA:74941
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001021 ! nerve
[Term]
id: UBERON:0002212
name: macula of saccule of membranous labyrinth
alt_id: UBERON:FMA_74944-MA_0001201
def: "." [Wikipedia:Macula_of_saccule]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Macula of saccule" EXACT []
synonym: "macula of saccule" EXACT []
synonym: "Macula of saccule of membranous labyrinth" EXACT []
synonym: "Saccular macula of membranous labyrinth" EXACT []
synonym: "saccular macula of membranous labyrinth" EXACT []
synonym: "saccular maculs" RELATED []
xref: FMA:74944
xref: MA:0001201
xref: ncithesaurus:Macula_of_Saccule
xref: ZFA:0007000
is_a: UBERON:0000054 ! macula
intersection_of: UBERON:0000054 ! macula
intersection_of: part_of UBERON:0001854 ! saccule of membranous labyrinth
relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth
[Term]
id: UBERON:0002213
name: cartilaginous joint
alt_id: UBERON:FMA_7496-MA_0000320
def: "Nonsynovial joint in which the articulating bones or cartilages are connected by cartilage. Examples: Spheno-occipital synchondrosis, first sternocostal joint, pubic symphysis." [Wikipedia:Cartilaginous_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Articulatio cartilaginea" EXACT []
synonym: "articulatio cartilaginea" EXACT []
synonym: "Cartilaginous joint" EXACT []
xref: FMA:7496
xref: MA:0000320
xref: ZFA:0005155
is_a: UBERON:0000982 ! joint
is_a: UBERON:0003657 ! implied link automatically realized ! limb joint
[Term]
id: UBERON:0002214
name: macula of utricle of membranous labyrinth
alt_id: UBERON:FMA_74960-MA_0001203
def: "." [Wikipedia:Macula_of_utricle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Macula of utricle" EXACT []
synonym: "macula of utricle" EXACT []
synonym: "Macula of utricle of membranous labyrinth" EXACT []
synonym: "utricular macula" RELATED []
xref: FMA:74960
xref: MA:0001203
xref: ncithesaurus:Macula_of_Utricle
xref: ZFA:0000030
is_a: UBERON:0000054 ! macula
intersection_of: UBERON:0000054 ! macula
intersection_of: part_of UBERON:0001853 ! utricle of membranous labyrinth
relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth
[Term]
id: UBERON:0002215
name: synchondrosis
alt_id: UBERON:FMA_7497-MA_0001501
def: "Cartilaginous joint in which the articulating bones or cartilages are connected by hyaline cartilage. Examples: spheno-occipital synchondrosis, first sternocostal joint." [Wikipedia:Synchondrosis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Epiphysial cartilage" EXACT []
synonym: "epiphysial cartilage" EXACT []
synonym: "Primary cartilaginous joint" EXACT []
synonym: "primary cartilaginous joint" EXACT []
synonym: "Synchondrosis" EXACT []
xref: FMA:7497
xref: MA:0001501
is_a: UBERON:0002209 ! fibrous joint
is_a: UBERON:0002213 ! cartilaginous joint
[Term]
id: UBERON:0002216
name: symphysis
alt_id: UBERON:FMA_7498-MA_0001504
def: "Cartilaginous joint in which the articulating bones or cartilages are connected by fibrocartilage. Examples: pubic symphysis, intervertebral symphysis, manubriosternal joint." [Wikipedia:Symphysis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Secondary cartilaginous joint" EXACT []
synonym: "secondary cartilaginous joint" EXACT []
synonym: "Symphysis" EXACT []
xref: FMA:7498
xref: MA:0001504
is_a: UBERON:0002209 ! fibrous joint
is_a: UBERON:0002213 ! cartilaginous joint
[Term]
id: UBERON:0002217
name: synovial joint
alt_id: UBERON:FMA_7501-MA_0000322
def: "Joint in which the articulating bones or cartilages are connected by an articular capsule which encloses a synovial membrane and a synovial cavity. Examples: Temporomandibular joint, knee joint." [Wikipedia:Synovial_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Articulatio synoviale" EXACT []
synonym: "articulatio synoviale" EXACT []
synonym: "Synovial joint" EXACT []
xref: FMA:7501
xref: MA:0000322
xref: OpenCyc:Mx4rv2bBV5wpEbGdrcN5Y29ycA
xref: ZFA:0005153
is_a: UBERON:0000982 ! joint
is_a: UBERON:0003657 ! implied link automatically realized ! limb joint
[Term]
id: UBERON:0002218
name: tympanic ring
alt_id: UBERON:FMA_75053-MA_0001225
comment: This class was created automatically from a combination of ontologies
synonym: "Tympanic ring" EXACT []
xref: FMA:75053
xref: MA:0001225
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001756 ! middle ear
relationship: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0002219
name: subfornical organ
alt_id: UBERON:FMA_75260-MA_0000940
def: "." [Wikipedia:Subfornical_organ]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Subfornical organ" EXACT []
xref: FMA:75260
xref: GAID:795
xref: MA:0000940
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002221
name: fontanelle
alt_id: UBERON:FMA_75438-MA_0001465
def: "." [Wikipedia:Fontanelle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fontanel" EXACT []
synonym: "Fontanelle" EXACT []
xref: FMA:75438
xref: MA:0001465
xref: ncithesaurus:Fontanelle
xref: TAO:0001738
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0002222
name: perichondrium
alt_id: UBERON:FMA_75446-ZFA_0001634
def: "Portion of connective tissue which surrounds cartilage." [Wikipedia:Perichondrium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cartilage connective tissue" RELATED []
synonym: "Perichondrium" EXACT []
xref: FMA:75446
xref: TAO:0001643
xref: ZFA:0001634
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0002223
name: endolymphatic sac
alt_id: UBERON:FMA_75639-MA_0001188
def: "." [Wikipedia:Endolymphatic_sac]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Endolymphatic sac" EXACT []
xref: EHDAA:7761
xref: FMA:75639
xref: GAID:887
xref: HOG:0000791
xref: MA:0001188
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002049 ! vasculature
[Term]
id: UBERON:0002224
name: thoracic cavity
alt_id: UBERON:FMA_7565-MA_0000032
def: "Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm. Examples: There is only one thoracic cavity." [Wikipedia:Thoracic_cavity]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cavity of chest" EXACT []
synonym: "cavity of chest" EXACT []
synonym: "Cavity of thorax" EXACT []
synonym: "cavity of thorax" EXACT []
synonym: "Chest cavity" EXACT []
synonym: "chest cavity" EXACT []
synonym: "Pectoral cavity" EXACT []
synonym: "pectoral cavity" EXACT []
synonym: "Thoracic cavity" EXACT []
xref: FMA:7565
xref: GAID:93
xref: MA:0000032
xref: ncithesaurus:Thoracic_Cavity
xref: OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg
xref: OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0002225
name: costal arch
alt_id: UBERON:FMA_7569-MA_0001396
comment: This class was created automatically from a combination of ontologies
synonym: "Costal arch" EXACT []
xref: FMA:7569
xref: MA:0001396
xref: ncithesaurus:Costal_Arch
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002228 ! rib
[Term]
id: UBERON:0002226
name: basilar membrane of cochlea
alt_id: UBERON:FMA_75706-MA_0001190
def: "." [Wikipedia:Basilar_membrane]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "basilar membrane" EXACT []
synonym: "Basilar membrane of cochlea" EXACT []
xref: FMA:75706
xref: GAID:872
xref: MA:0001190
xref: ncithesaurus:Basilar_Membrane
xref: NIF_GrossAnatomy:birnlex_2521
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002227
name: spiral organ of cochlea
alt_id: UBERON:FMA_75715-MA_0001193
def: "." [Wikipedia:Organ_of_Corti]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cochlear spiral organ" EXACT []
synonym: "cochlear spiral organ" EXACT []
synonym: "Organ of Corti" EXACT []
synonym: "organ of corti" RELATED []
synonym: "Spiral organ" EXACT []
synonym: "spiral organ" EXACT []
synonym: "Spiral organ of cochlea" EXACT []
synonym: "Spiral organ of Corti" EXACT []
synonym: "spiral organ of corti" EXACT []
xref: BTO:0001691
xref: EFO:0001364
xref: FMA:75715
xref: GAID:772
xref: MA:0001193
xref: ncithesaurus:Organ_of_Corti
xref: NIF_GrossAnatomy:birnlex_2526
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002228
name: rib
alt_id: UBERON:FMA_7574-MA_0000315-ZFA_0000538
def: "Ribs are intersegmental rod-shaped bones that form in the peritoneal membrane and attach to the vertebral parapophyses. They protect and support internal organs." [Wikipedia:Rib, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "dorsal rib" RELATED []
synonym: "pleural rib" RELATED []
synonym: "Rib" EXACT []
xref: AAO:0000545
xref: FMA:7574
xref: GAID:245
xref: HOG:0001154
xref: MA:0000315
xref: ncithesaurus:Rib
xref: OpenCyc:Mx4rvVjNoZwpEbGdrcN5Y29ycA
xref: TAO:0000538
xref: ZFA:0000538
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003459 ! implied link automatically realized ! chest bone
is_a: UBERON:0003463 ! implied link automatically realized ! trunk bone
is_a: UBERON:0003572 ! implied link automatically realized ! chest connective tissue
is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue
relationship: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0002091 ! appendicular skeleton
relationship: part_of UBERON:0002412 ! vertebra
[Term]
id: UBERON:0002229
name: interparietal bone
alt_id: UBERON:FMA_75748-MA_0001467
comment: This class was created automatically from a combination of ontologies
synonym: "Interparietal bone" EXACT []
xref: FMA:75748
xref: MA:0001467
is_a: UBERON:0001474 ! bone
[Term]
id: UBERON:0002230
name: head of rib
alt_id: UBERON:FMA_7575-MA_0001415
def: "." [Wikipedia:Head_of_rib]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Head of rib" EXACT []
synonym: "Rib head" EXACT []
synonym: "rib head" EXACT []
xref: FMA:7575
xref: MA:0001415
xref: ncithesaurus:Rib_Head
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002228 ! rib
[Term]
id: UBERON:0002231
name: body of rib
alt_id: UBERON:FMA_7577-MA_0001416
comment: This class was created automatically from a combination of ontologies
synonym: "Body of rib" EXACT []
synonym: "Rib body" EXACT []
synonym: "rib body" EXACT []
synonym: "rib shaft" EXACT []
synonym: "Shaft of rib" EXACT []
synonym: "shaft of rib" EXACT []
xref: FMA:7577
xref: MA:0001416
xref: ncithesaurus:Rib_Shaft
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002228 ! rib
[Term]
id: UBERON:0002232
name: olfactory gland
alt_id: UBERON:FMA_75801-MA_0000287
comment: This class was created automatically from a combination of ontologies
synonym: "Olfactory gland" EXACT []
synonym: "Olfactory gland of Bowman" EXACT []
synonym: "olfactory gland of bowman" RELATED []
xref: BTO:0001697
xref: FMA:75801
xref: MA:0000287
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0001997 ! olfactory epithelium
[Term]
id: UBERON:0002233
name: tectorial membrane of cochlea
alt_id: UBERON:FMA_75805-MA_0001199
def: "." [Wikipedia:Tectorial_membrane]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Tectorial membrane" EXACT []
synonym: "tectorial membrane" EXACT []
synonym: "Tectorial membrane of cochlea" EXACT []
synonym: "Tectorial membrane of spiral organ of cochlea" EXACT []
synonym: "tectorial membrane of spiral organ of cochlea" EXACT []
xref: FMA:75805
xref: GAID:876
xref: MA:0001199
xref: ncithesaurus:Tectorial_Membrane
xref: NIF_GrossAnatomy:birnlex_2531
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002234
name: proximal phalanx of finger
alt_id: UBERON:FMA_75816-MA_0001395
comment: This class was created automatically from a combination of ontologies
synonym: "Proximal phalanx of finger" EXACT []
synonym: "proximal phalanx of hand" EXACT []
xref: FMA:75816
xref: MA:0001395
xref: ncithesaurus:Proximal_Phalanx_of_Hand
is_a: UBERON:0001436 ! phalanx of finger
[Term]
id: UBERON:0002235
name: tubercle of rib
alt_id: UBERON:FMA_7583-MA_0001417
def: "." [Wikipedia:Tubercle_of_rib]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Rib tubercle" EXACT []
synonym: "rib tubercle" EXACT []
synonym: "Tubercle of rib" EXACT []
xref: FMA:7583
xref: MA:0001417
xref: ncithesaurus:Rib_Tubercle
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002231 ! body of rib
[Term]
id: UBERON:0002236
name: costal cartilage
alt_id: UBERON:FMA_7591-MA_0000106
def: "." [Wikipedia:Costal_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Costal cartilage" EXACT []
xref: FMA:7591
xref: MA:0000106
xref: ncithesaurus:Costal_Cartilage
is_a: UBERON:0002418 ! cartilage
relationship: part_of UBERON:0002228 ! rib
[Term]
id: UBERON:0002237
name: true rib
alt_id: UBERON:FMA_7592-MA_0001419
comment: This class was created automatically from a combination of ontologies
synonym: "Costa vera" EXACT []
synonym: "costa vera" EXACT []
synonym: "True rib" EXACT []
xref: FMA:7592
xref: MA:0001419
xref: OpenCyc:Mx4rv4-iWJwpEbGdrcN5Y29ycA
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0002238
name: false rib
alt_id: UBERON:FMA_7594-MA_0001398
def: "." [Wikipedia:False_rib]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Costa spuria" EXACT []
synonym: "costa spuria" EXACT []
synonym: "False rib" EXACT []
xref: FMA:7594
xref: MA:0001398
is_a: UBERON:0002228 ! rib
[Term]
id: UBERON:0002239
name: floating rib
alt_id: UBERON:FMA_7595-MA_0001399
def: "." [Wikipedia:Floating_rib]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Costa fluitante" EXACT []
synonym: "costa fluitante" EXACT []
synonym: "Floating rib" EXACT []
xref: FMA:7595
xref: MA:0001399
xref: OpenCyc:Mx4rvaPCWZwpEbGdrcN5Y29ycA
is_a: UBERON:0002238 ! false rib
[Term]
id: UBERON:0002240
name: spinal cord
alt_id: UBERON:FMA_7647-MA_0000216-MIAA_0000183-XAO_0000020-ZFA_0000075
def: "Organ component of neuraxis that has as its parts gray matter and white matter that surround the central canal. Examples: There is only one spinal cord. // Elongated, approximately cylindrical part of the central nervous system that lies in the vertebral canal and from which the spinal nerves emerge." [OMD:spinal+cord, Wikipedia:Spinal_cord]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Spinal cord" EXACT []
xref: BTO:0001279
xref: EFO:0000110
xref: EHDAA:2863
xref: FMA:7647
xref: GAID:695
xref: HOG:0000601
xref: MA:0000216
xref: MAT:0000183
xref: MIAA:0000183
xref: ncithesaurus:Spinal_Cord
xref: NIF_GrossAnatomy:birnlex_1709
xref: OpenCyc:Mx4rvVjjk5wpEbGdrcN5Y29ycA
xref: TAO:0000075
xref: XAO:0000020
xref: ZFA:0000075
is_a: UBERON:0000489 ! cavitated compound organ
relationship: develops_from UBERON:0003076 ! posterior neural tube
relationship: disconnected_from UBERON:0000955 ! brain
relationship: part_of UBERON:0001017 ! central nervous system
relationship: part_of UBERON:0001137 ! back
[Term]
id: UBERON:0002241
name: chondrocranium
alt_id: UBERON:FMA_76621-XAO_0003059-ZFA_0001424
def: "Cranial skeletal elements composed of cartilage and cartilage replacement bones." [ISBN:0471209627, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "cartilaginous skull" RELATED []
synonym: "chondocranium" RELATED []
synonym: "Chondrocranium" EXACT []
synonym: "neurocranium" RELATED []
xref: AAO:0000094
xref: EFO:0000943
xref: EHDAA:6031
xref: FMA:76621
xref: HOG:0000288
xref: MA:0000317
xref: ncithesaurus:Chondrocranium
xref: TAO:0001424
xref: XAO:0003059
xref: ZFA:0001424
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002242
name: nucleus pulposus
alt_id: UBERON:FMA_76703-MA_0000112
def: "a jelly-like connective tissue in the middle of the spinal disc. It is the remnant of the notochord. It functions to distribute hydraulic pressure in all directions within each disc under compressive loads. The nucleus pulposus consists of chondrocytes, collagen fibrils, and proteoglycan aggrecans that have hyaluronic long chains which attract water. Attached to each hyaluronic chain are side chains of chondroitin sulfate and keratan sulfate[WP]." [Wikipedia:Nucleus_pulposus]
subset: uberon_slim
synonym: "pulpy nucleus" EXACT []
xref: BTO:0003626
xref: FMA:76703
xref: MA:0000112
is_a: UBERON:0002384 ! connective tissue
relationship: surrounded_by UBERON:0001066 ! intervertebral disk
[Term]
id: UBERON:0002243
name: cutaneous vein
alt_id: UBERON:FMA_76720-MA_0002098
comment: This class was created automatically from a combination of ontologies
synonym: "Cutaneous vein" EXACT []
xref: FMA:76720
xref: MA:0002098
xref: ncithesaurus:Cutaneous_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002244
name: premaxilla
alt_id: UBERON:FMA_76869-MA_0001493-ZFA_0000567
def: "The premaxilla is a bone of the upper jaw. It is an L-shaped bone first visible as a thin sliver in the anterodorsal region of the upper lip, anterior to the dorsal tip of the maxilla (5.7 mm). In the adult, the premaxilla is ligamentously attached to its counterpart at the midline and the kinethmoid posterodorsally, by the premaxillo-rostroid ligaments. Premaxillary teeth are absent in zebrafish." [Wikipedia:Premaxilla, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Premaxilla" EXACT []
synonym: "premaxillae" RELATED []
xref: AAO:0000461
xref: EHDAA:6962
xref: EHDAA:8033
xref: FMA:76869
xref: HOG:0000426
xref: MA:0001493
xref: TAO:0000567
xref: ZFA:0000567
is_a: UBERON:0002514 ! intramembranous bone
[Term]
id: UBERON:0002245
name: hemisphere of cerebellum
alt_id: UBERON:FMA_76925-MA_0000200
def: "." [Wikipedia:Cerebellar_hemisphere]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "cerebellar hemisphere" EXACT []
synonym: "Cerebellum hemisphere" EXACT []
synonym: "cerebellum hemisphere" EXACT []
synonym: "Hemisphere of cerebellum" EXACT []
synonym: "Hemisphere of cerebellum [H II - H X]" EXACT []
synonym: "hemisphere of cerebellum [h ii - h x]" EXACT []
xref: FMA:76925
xref: MA:0000200
xref: NIF_GrossAnatomy:birnlex_1575
is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex
is_a: UBERON:0002946 ! regional part of cerebellum
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0002246
name: dorsal thoracic nucleus
alt_id: UBERON:FMA_77023-MA_0001121
def: "." [Wikipedia:Clarke's_column]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Clarke's column" EXACT []
synonym: "clarke's column" EXACT []
synonym: "Clarke's nucleus" EXACT []
synonym: "clarke's nucleus" RELATED []
synonym: "Dorsal thoracic nucleus" EXACT []
synonym: "Posterior thoracic nucleus" EXACT []
synonym: "posterior thoracic nucleus" EXACT []
synonym: "spinal cord dorsal nucleus" EXACT []
synonym: "Stilling-Clarke's column" EXACT []
synonym: "stilling-clarke's column" EXACT []
synonym: "Stilling-Clarke's nucleus" EXACT []
synonym: "stilling-clarke's nucleus" EXACT []
xref: FMA:77023
xref: MA:0001121
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord
[Term]
id: UBERON:0002247
name: uterine horn
alt_id: UBERON:FMA_77053-MA_0000393
def: "." [Wikipedia:Uterine_horn]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Uterine horn" EXACT []
xref: EFO:0000975
xref: FMA:77053
xref: MA:0000393
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0002248
name: transverse pericardial sinus
alt_id: UBERON:FMA_77132-MA_0001880
def: "." [Wikipedia:Transverse_pericardial_sinus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Thiele's canal" EXACT []
synonym: "thiele's canal" EXACT []
synonym: "Transverse pericardial sinus" EXACT []
synonym: "Transverse sinus of pericardial cavity" EXACT []
synonym: "transverse sinus of pericardial cavity" EXACT []
xref: EHDAA:796
xref: FMA:77132
xref: MA:0001880
is_a: UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0002249
name: median artery
alt_id: UBERON:FMA_77142-MA_0001999
comment: This class was created automatically from a combination of ontologies
synonym: "Median artery" EXACT []
xref: FMA:77142
xref: MA:0001999
xref: ncithesaurus:Median_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002250
name: popliteal artery
alt_id: UBERON:FMA_77155-MA_0002021
def: "." [Wikipedia:Popliteal_artery]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Popliteal artery" EXACT []
xref: FMA:77155
xref: GAID:504
xref: MA:0002021
xref: ncithesaurus:Popliteal_Artery
xref: OpenCyc:Mx4rvduV6pwpEbGdrcN5Y29ycA
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002251
name: iliocostalis
alt_id: UBERON:FMA_77177-MA_0002319
def: "." [Wikipedia:Iliocostalis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Iliocostalis" EXACT []
xref: FMA:77177
xref: MA:0002319
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0002252
name: splenius
alt_id: UBERON:FMA_77180-MA_0002382
def: "." [Wikipedia:Splenius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Splenius" EXACT []
xref: FMA:77180
xref: MA:0002382
xref: ncithesaurus:Splenius
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0002253
name: incisive bone
alt_id: UBERON:FMA_77231-MA_0001485
def: "." [Wikipedia:Incisive_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Incisive bone" EXACT []
xref: FMA:77231
xref: MA:0001485
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0002254
name: thyroglossal duct
alt_id: UBERON:FMA_77274-MA_0000130
def: "." [Wikipedia:Thyroglossal_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Thyroglossal duct" EXACT []
xref: FMA:77274
xref: HOG:0000746
xref: MA:0000130
xref: ncithesaurus:Thyroglossal_Duct
is_a: UBERON:0000058 ! duct
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0002255
name: vomeronasal organ
alt_id: UBERON:FMA_77280-MA_0000289
def: "." [Wikipedia:Vomeronasal_organ]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Jacobson's organ" EXACT []
synonym: "jacobson's organ" EXACT []
synonym: "organ of jacobsen" RELATED []
synonym: "Vomeronasal organ" EXACT []
xref: BTO:0002608
xref: EFO:0001934
xref: EHDAA:7865
xref: FMA:77280
xref: GAID:354
xref: HOG:0000665
xref: MA:0000289
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002256
name: dorsal horn of spinal cord
alt_id: UBERON:FMA_77405-MA_0001119
comment: This class was created automatically from a combination of ontologies
synonym: "Dorsal grey column of spinal cord" EXACT []
synonym: "dorsal grey column of spinal cord" EXACT []
synonym: "Dorsal horn of spinal cord" EXACT []
synonym: "Posterior grey column of spinal cord" EXACT []
synonym: "posterior grey column of spinal cord" EXACT []
synonym: "spinal cord dorsal horn" EXACT []
xref: FMA:256530
xref: FMA:77405
xref: HOG:0001287
xref: MA:0001119
xref: NIF_GrossAnatomy:birnlex_2667
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002315 ! gray matter of spinal cord
[Term]
id: UBERON:0002257
name: ventral horn of spinal cord
alt_id: UBERON:FMA_77431-MA_0001134
comment: This class was created automatically from a combination of ontologies
synonym: "Anterior grey column of spinal cord" EXACT []
synonym: "anterior grey column of spinal cord" EXACT []
synonym: "spinal cord ventral horn" EXACT []
synonym: "Ventral grey column of spinal cord" EXACT []
synonym: "ventral grey column of spinal cord" EXACT []
synonym: "Ventral horn of spinal cord" EXACT []
xref: FMA:256541
xref: FMA:77431
xref: HOG:0001288
xref: MA:0001134
xref: NIF_GrossAnatomy:birnlex_2668
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002315 ! gray matter of spinal cord
[Term]
id: UBERON:0002258
name: dorsal funiculus
alt_id: UBERON:FMA_77461-ZFA_0000501
def: "." [Wikipedia:Dorsal_funiculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Dorsal funiculus" EXACT []
synonym: "Dorsal funiculus of spinal cord" EXACT []
synonym: "dorsal funiculus of spinal cord" EXACT []
synonym: "Posterior funiculus of spinal cord" EXACT []
synonym: "posterior funiculus of spinal cord" EXACT []
xref: FMA:77461
xref: TAO:0000501
xref: ZFA:0000501
is_a: UBERON:0000122 ! nerve fiber bundle
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002259
name: tectal plate
alt_id: UBERON:FMA_77488-MA_0002567
def: "." [Wikipedia:Corpora_quadrigemina]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "corpora quadrigemina" EXACT []
synonym: "Quadrigeminal plate" EXACT []
synonym: "quadrigeminal plate" EXACT []
synonym: "Tectal plate" EXACT []
xref: BTO:0001710
xref: FMA:77488
xref: GAID:574
xref: MA:0002567
xref: ncithesaurus:Corpora_Quadrigemina
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002966 ! implied link automatically realized ! regional part of midbrain tectum
relationship: part_of UBERON:0002314 ! midbrain tectum
[Term]
id: UBERON:0002260
name: ventral root
alt_id: UBERON:FMA_77516-ZFA_0000705
def: "The efferent motor root of a spinal nerve. At its distal end, the ventral root joins with the dorsal root to form a mixed spinal nerve." [Wikipedia:Ventral_root]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ventral root" EXACT []
xref: FMA:77516
xref: NIF_GrossAnatomy:nlx_anat_20090209
xref: TAO:0000705
xref: ZFA:0000705
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002261
name: dorsal root
alt_id: UBERON:FMA_77517-ZFA_0000652
def: "." [Wikipedia:Dorsal_root]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Dorsal root" EXACT []
xref: FMA:77517
xref: TAO:0000652
xref: ZFA:0000652
is_a: UBERON:0002211 ! segment of nerve
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002262
name: celiac ganglion
alt_id: UBERON:FMA_77570-MA_0001158
def: "." [Wikipedia:Celiac_ganglion]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Celiac ganglion" EXACT []
synonym: "Coeliac ganglion" EXACT []
synonym: "coeliac ganglion" RELATED []
xref: EHDAA:8946
xref: FMA:77570
xref: MA:0001158
xref: ncithesaurus:Coeliac_Ganglion
is_a: UBERON:0001806 ! sympathetic ganglion
[Term]
id: UBERON:0002263
name: lentiform nucleus
alt_id: UBERON:FMA_77615-MA_0000896
def: "." [Wikipedia:Lentiform_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lenticular nucleus" EXACT []
synonym: "lenticular nucleus" EXACT []
synonym: "Lentiform nucleus" EXACT []
xref: FMA:77615
xref: MA:0000896
xref: ncithesaurus:Lenticular_Nucleus
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002264
name: olfactory bulb
alt_id: UBERON:FMA_77624-MA_0000194-MIAA_0000116-ZFA_0000402
def: "Segment of neural tree organ which is continuous with a set of olfactory nerves and an olfactory tract." [Wikipedia:Olfactory_bulb]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "main olfactory bulb" RELATED []
synonym: "Olfactory bulb" EXACT []
xref: BTO:0000961
xref: EFO:0000108
xref: FMA:77624
xref: GAID:633
xref: HOG:0000033
xref: MA:0000194
xref: MIAA:0000116
xref: ncithesaurus:Olfactory_Bulb
xref: NIF_GrossAnatomy:birnlex_1137
xref: TAO:0000402
xref: ZFA:0000402
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0002265
name: olfactory tract
alt_id: UBERON:FMA_77626-MA_0000975
def: "Tract of brain which is continuous with olfactory bulb and the cerebral cortex." [Wikipedia:Olfactory_tract]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Olfactory tract" EXACT []
xref: BTO:0003647
xref: FMA:77626
xref: MA:0000975
xref: ncithesaurus:Olfactory_Tract
xref: NIF_GrossAnatomy:birnlex_1663
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002266
name: anterior olfactory nucleus
alt_id: UBERON:FMA_77628-MA_0000968
def: "." [Wikipedia:Anterior_olfactory_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Anterior olfactory nucleus" EXACT []
synonym: "Retrobulbar nucleus [A8]" EXACT []
synonym: "retrobulbar nucleus [a8]" EXACT []
xref: BTO:0003649
xref: FMA:77628
xref: MA:0000968
xref: ncithesaurus:Anterior_Olfactory_Nucleus
xref: NIF_GrossAnatomy:birnlex_1085
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002267
name: laterodorsal tegmental nucleus
alt_id: UBERON:FMA_77654-MA_0001016
def: "." [Wikipedia:Laterodorsal_tegmental_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Laterodorsal tegmental nucleus" EXACT []
synonym: "Lateroposterior tegmental nucleus" EXACT []
synonym: "lateroposterior tegmental nucleus" EXACT []
xref: BTO:0004016
xref: FMA:77654
xref: MA:0001016
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002268
name: olfactory organ
alt_id: UBERON:FMA_77659-XAO_0000273
comment: This class was created automatically from a combination of ontologies
synonym: "Olfactory organ" EXACT []
xref: BTO:0001772
xref: FMA:77659
xref: HOG:0000287
xref: XAO:0000273
is_a: UBERON:0000020 ! sense organ
relationship: develops_from UBERON:0003050 ! olfactory placode
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002269
name: pupillary membrane
alt_id: UBERON:FMA_77663-MA_0001293
def: "Fetal membrane that crosses the pupil." [UBERON:cjm]
comment: This class was created automatically from a combination of ontologies
synonym: "Pupillary membrane" EXACT []
xref: FMA:77663
xref: MA:0001293
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0001771 ! pupil
[Term]
id: UBERON:0002270
name: hyaloid artery
alt_id: UBERON:FMA_77670-ZFA_0005045
def: "Artery that is internal to the eye. Isogai et al. 2001." [Wikipedia:Hyaloid_artery, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hyaloid artery" EXACT []
xref: FMA:77670
xref: TAO:0005045
xref: ZFA:0005045
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002271
name: periventricular zone of hypothalamus
alt_id: UBERON:FMA_77682-MA_0000846
comment: This class was created automatically from a combination of ontologies
synonym: "hypothalamus periventricular zone" EXACT []
synonym: "Periventricular zone of hypothalamus" EXACT []
xref: FMA:77682
xref: HOG:0000623
xref: MA:0000846
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002272
name: medial zone of hypothalamus
alt_id: UBERON:FMA_77683-MA_0000837
comment: This class was created automatically from a combination of ontologies
synonym: "hypothalamus medial zone" EXACT []
synonym: "Medial zone of hypothalamus" EXACT []
xref: FMA:77683
xref: MA:0000837
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002273
name: lateral zone of hypothalamus
alt_id: UBERON:FMA_77684-MA_0000833
comment: This class was created automatically from a combination of ontologies
synonym: "hypothalamus lateral zone" EXACT []
synonym: "Lateral zone of hypothalamus" EXACT []
xref: FMA:77684
xref: MA:0000833
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002274
name: perifornical nucleus
alt_id: UBERON:FMA_77688-MA_0000836
comment: This class was created automatically from a combination of ontologies
synonym: "Perifornical nucleus" EXACT []
xref: FMA:77688
xref: MA:0000836
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus
[Term]
id: UBERON:0002275
name: reticular formation
alt_id: UBERON:FMA_77719-ZFA_0000421
def: "." [Wikipedia:Reticular_formation]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Reticular formation" EXACT []
xref: FMA:77719
xref: GAID:588
xref: TAO:0000421
xref: ZFA:0000421
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002276
name: lamina of spiral limbus
alt_id: UBERON:FMA_77721-MA_0001191
def: "." [Wikipedia:Limbus_laminae_spiralis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lamina of spiral limbus" EXACT []
synonym: "limbus lamina spiralis" EXACT []
synonym: "Limbus laminae spiralis" EXACT []
synonym: "limbus laminae spiralis" EXACT []
synonym: "Spiral limbus lamina" EXACT []
synonym: "spiral limbus lamina" EXACT []
xref: FMA:77721
xref: MA:0001191
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002277
name: spiral sulcus
alt_id: UBERON:FMA_77744-MA_0001195
comment: This class was created automatically from a combination of ontologies
synonym: "Spiral sulcus" EXACT []
synonym: "Sulcus spiralis" EXACT []
synonym: "sulcus spiralis" EXACT []
xref: FMA:77744
xref: MA:0001195
is_a: UBERON:0000093 ! sulcus
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002278
name: perilymphatic space
alt_id: UBERON:FMA_77745-MA_0000248
comment: This class was created automatically from a combination of ontologies
synonym: "perilymphatic channel" EXACT []
synonym: "Perilymphatic space" EXACT []
xref: BTO:0002083
xref: FMA:77745
xref: MA:0000248
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0002279
name: vestibular aqueduct
alt_id: UBERON:FMA_77821-MA_0001186
def: "." [Wikipedia:Vestibular_aqueduct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Vestibular aqueduct" EXACT []
xref: FMA:77821
xref: GAID:885
xref: MA:0001186
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002280
name: otolith
alt_id: UBERON:FMA_77826-ZFA_0001617
def: "MERGED DEFINITION: TARGET DEFINITION: Portion of organism substance composed of calcium carbonate located in the otolith organ. -------------------- SOURCE DEFINITION: Brightly refractile stone-like organ within the otic vesicle and positioned over a sensory macula; two form in each vesicle during the late segmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for otolith by T. Whitfield.)" [Wikipedia:Otolith, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "immature otolith" RELATED []
synonym: "immature otoliths" RELATED []
synonym: "Otolith" EXACT []
xref: FMA:77826
xref: ncithesaurus:Otolith
xref: TAO:0001621
xref: ZFA:0001617
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: part_of UBERON:0001846 ! internal ear
[Term]
id: UBERON:0002281
name: vestibular membrane of cochlear duct
alt_id: UBERON:FMA_77829-MA_0001200
def: "a membrane inside the cochlea of the inner ear. It separates scala media from scala vestibuli. Together with the basilar membrane it creates a compartment in the cochlea filled with endolymph, which is important for the function of the organ of Corti. It primarily functions as a diffusion barrier, allowing nutrients to travel from the perilymph to the endolymph of the membranous labyrinth. Histologically, the membrane is composed of two layers of flattened epithelium, separated by a basal lamina. Its structure suggests that its function is transport of fluid and electrolytes." [Wikipedia:Reissner's_membrane]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Reissner's membrane" EXACT []
synonym: "reissner's membrane" RELATED []
synonym: "Superior wall of cochlear duct" EXACT []
synonym: "superior wall of cochlear duct" EXACT []
synonym: "vestibular membrane" EXACT []
synonym: "Vestibular membrane of cochlear duct" EXACT []
synonym: "Vestibular membrane of Reissner" EXACT []
synonym: "vestibular membrane of reissner" EXACT []
xref: FMA:77829
xref: MA:0001200
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002282
name: stria vascularis of cochlear duct
alt_id: UBERON:FMA_77832-MA_0001198
def: "." [Wikipedia:Stria_vascularis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "stria vascularis" EXACT []
synonym: "Stria vascularis of cochlea" EXACT []
synonym: "stria vascularis of cochlea" EXACT []
synonym: "Stria vascularis of cochlear duct" EXACT []
xref: BTO:0001819
xref: EFO:0001644
xref: FMA:77832
xref: GAID:875
xref: MA:0001198
xref: NIF_GrossAnatomy:birnlex_2525
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0002283
name: nail matrix
alt_id: UBERON:FMA_77856-MA_0002707
def: "." [Wikipedia:Nail_matrix]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Nail matrix" EXACT []
xref: FMA:77856
xref: MA:0002707
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001705 ! nail
[Term]
id: UBERON:0002284
name: hyponychium
alt_id: UBERON:FMA_77860-MA_0002705
def: "." [Wikipedia:Hyponychium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hyponychium" EXACT []
xref: FMA:77860
xref: MA:0002705
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001705 ! nail
relationship: part_of UBERON:0002097 ! skin
[Term]
id: UBERON:0002285
name: lateral ventricle
alt_id: UBERON:FMA_78448-MA_0000192
def: "The two lateral ventricles are a cavity in each of the cerebral hemispheres derived from the cavity of the embryonic neural tube. They are separated from each other by the septum pellucidum, and each communicates with the third ventricle by the foramen of Monro, through which also the choroid plexuses of the lateral ventricles become continuous with that of the third ventricle[GO]." [Wikipedia:Lateral_ventricle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lateral ventricle" EXACT []
xref: BTO:0000879
xref: EFO:0001961
xref: EHDAA:3502
xref: EHDAA:6576
xref: FMA:78448
xref: GAID:611
xref: MA:0000192
xref: ncithesaurus:Lateral_Ventricle
xref: NIF_GrossAnatomy:birnlex_1263
xref: OpenCyc:Mx4rvYsFdZwpEbGdrcN5Y29ycA
xref: ZFA:0000696
is_a: UBERON:0002300 ! ventricle
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002286
name: third ventricle
alt_id: UBERON:FMA_78454-MA_0000182-ZFA_0000161
def: "Fluid-filled brain cavity. Kimmel et al, 1995." [Wikipedia:Third_ventricle, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "3rd ventricle" RELATED []
synonym: "diencephalic ventricle" RELATED []
synonym: "diencephalic vesicle" RELATED []
synonym: "Third ventricle" EXACT []
xref: FMA:78454
xref: GAID:614
xref: HOG:0000007
xref: MA:0000182
xref: ncithesaurus:Third_Ventricle_of_Brain
xref: NIF_GrossAnatomy:birnlex_1658
xref: NIF_GrossAnatomy:birnlex_714
xref: OpenCyc:Mx4rvakhcJwpEbGdrcN5Y29ycA
xref: TAO:0000161
xref: ZFA:0000161
is_a: UBERON:0002300 ! ventricle
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0002287
name: optic recess of third ventricle
alt_id: UBERON:FMA_78455-ZFA_0000049
def: "." [Wikipedia:Optic_recess]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Optic recess" EXACT []
synonym: "optic recess" EXACT []
synonym: "Optic recess of third ventricle" EXACT []
synonym: "Preoptic recess" EXACT []
synonym: "preoptic recess" EXACT []
synonym: "Supraoptic recess" EXACT []
synonym: "supraoptic recess" EXACT []
xref: EHDAA:1343
xref: EHDAA:1973
xref: EHDAA:2649
xref: EHDAA:3478
xref: FMA:78455
xref: HOG:0000595
xref: TAO:0000049
xref: ZFA:0000049
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0002288
name: choroid plexus of third ventricle
alt_id: UBERON:FMA_78462-MA_0000879
comment: This class was created automatically from a combination of ontologies
synonym: "3rd ventricle choroid plexus" RELATED []
synonym: "Chorioid plexus of third ventricle" EXACT []
synonym: "chorioid plexus of third ventricle" EXACT []
synonym: "Choroid plexus of third ventricle" EXACT []
synonym: "third ventricle choroid plexus" EXACT []
xref: FMA:78462
xref: MA:0000879
xref: ZFA:0001444
is_a: UBERON:0001886 ! choroid plexus
intersection_of: UBERON:0001886 ! choroid plexus
intersection_of: part_of UBERON:0002286 ! third ventricle
relationship: part_of UBERON:0002286 ! third ventricle
[Term]
id: UBERON:0002289
name: cerebral aqueduct
alt_id: UBERON:FMA_78467-MA_0000208
def: "." [Wikipedia:Cerebral_aqueduct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Aqueduct (Sylvius)" EXACT []
synonym: "aqueduct (sylvius)" EXACT []
synonym: "Aqueduct of midbrain" EXACT []
synonym: "aqueduct of midbrain" EXACT []
synonym: "Aqueduct of Sylvius" EXACT []
synonym: "aqueduct of sylvius" EXACT []
synonym: "Cerebral aqueduct" EXACT []
synonym: "Cerebral aqueduct of Sylvius" EXACT []
synonym: "cerebral aqueduct of sylvius" EXACT []
xref: EHDAA:3696
xref: FMA:78467
xref: GAID:583
xref: HOG:0000832
xref: MA:0000208
xref: ncithesaurus:Aqueduct_of_Sylvius
xref: NIF_GrossAnatomy:birnlex_1261
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0002290
name: choroid plexus of fourth ventricle
alt_id: UBERON:FMA_78492-MA_0000983
comment: This class was created automatically from a combination of ontologies
synonym: "4th ventricle choroid plexus" RELATED []
synonym: "Chorioid plexus of fourth ventricle" EXACT []
synonym: "chorioid plexus of fourth ventricle" EXACT []
synonym: "Choroid plexus of fourth ventricle" EXACT []
synonym: "fourth ventricle choroid plexus" EXACT []
xref: FMA:78492
xref: MA:0000983
xref: ZFA:0001446
is_a: UBERON:0001886 ! choroid plexus
intersection_of: UBERON:0001886 ! choroid plexus
intersection_of: part_of UBERON:0002422 ! fourth ventricle
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002291
name: central canal
alt_id: UBERON:0002220
alt_id: UBERON:FMA_75364-MA_0001117
alt_id: UBERON:FMA_78497-ZFA_0000938
def: "A cerebrospinal fluid-filled space that runs longitudinally through the length of the entire spinal cord. The central canal is contiguous with the ventricular system of the brain. The central canal represents the adult remainder of the neural tube." [Wikipedia:Central_canal]
comment: previously mapped to FMA:75364
subset: uberon_slim
synonym: "Central canal" EXACT []
synonym: "central canal of spinal cord" EXACT []
synonym: "neural lumen" RELATED []
synonym: "spinal cord central canal" EXACT []
xref: FMA:78497
xref: MA:0001117
xref: ncithesaurus:Central_Canal
xref: NIF_GrossAnatomy:birnlex_1409
xref: TAO:0000938
xref: ZFA:0000938
is_a: UBERON:0002553 ! anatomical cavity
relationship: develops_from UBERON:0001049 ! neural tube
relationship: has_part UBERON:0001359 ! cerebrospinal fluid
relationship: surrounded_by UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002292
name: joint of head of rib
alt_id: UBERON:FMA_7951-MA_0001510
def: "." [Wikipedia:Costovertebral_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Costal head joint" EXACT []
synonym: "costal head joint" EXACT []
synonym: "Costocorporeal joint" EXACT []
synonym: "costocorporeal joint" EXACT []
synonym: "Costovertebral joint" EXACT []
synonym: "costovertebral joint" EXACT []
synonym: "Joint of costal head" EXACT []
synonym: "joint of costal head" EXACT []
synonym: "Joint of head of rib" EXACT []
xref: FMA:7951
xref: MA:0001510
xref: ncithesaurus:Costovertebral_Joint
is_a: UBERON:0002001 ! joint of rib
is_a: UBERON:0002217 ! synovial joint
intersection_of: UBERON:0000982 ! joint
intersection_of: part_of UBERON:0002230 ! head of rib
[Term]
id: UBERON:0002293
name: costochondral joint
alt_id: UBERON:FMA_7956-MA_0001509
def: "." [Wikipedia:Costochondral_joint]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Articulatio costochondralis" EXACT []
synonym: "articulatio costochondralis" EXACT []
synonym: "Chondrocostal synchondrosis" EXACT []
synonym: "chondrocostal synchondrosis" EXACT []
synonym: "Costochondral joint" EXACT []
synonym: "Costochondral junction" EXACT []
synonym: "costochondral junction" EXACT []
synonym: "Costochondral synchondrosis" EXACT []
synonym: "costochondral synchondrosis" EXACT []
xref: FMA:7956
xref: MA:0001509
xref: ncithesaurus:Costochondral_Joint
xref: OpenCyc:Mx4rvfy27JwpEbGdrcN5Y29ycA
is_a: UBERON:0002001 ! joint of rib
is_a: UBERON:0002215 ! synchondrosis
[Term]
id: UBERON:0002294
name: biliary system
alt_id: UBERON:FMA_79646-MA_0001273
def: "Anatomical system that consists of the organs and ducts (bile ducts, gallbladder, and associated structures) that are involved in the production and transportation of bile." [Wikipedia:Biliary_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Biliary apparatus" EXACT []
synonym: "biliary apparatus" EXACT []
synonym: "Biliary system" EXACT []
synonym: "Biliary tract" EXACT []
synonym: "biliary tract" EXACT []
xref: FMA:79646
xref: GAID:279
xref: MA:0001273
xref: ncithesaurus:Biliary_Tract
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
relationship: part_of UBERON:0002423 ! hepatobiliary system
[Term]
id: UBERON:0002295
name: scala media
alt_id: UBERON:FMA_79789-MA_0002458
def: "." [Wikipedia:Scala_media]
comment: This class was created automatically from a combination of ontologies. TODO: check w wikipedia, cochlear duct
subset: uberon_slim
synonym: "cochlear duct" RELATED []
synonym: "Scala media" EXACT []
xref: FMA:79789
xref: MA:0002458
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001844 ! cochlea
[Term]
id: UBERON:0002296
name: dorsal mesentery
alt_id: UBERON:FMA_79795-ZFA_0005130
def: "The mesentery that originates from the dorsal side of the peritoneal cavity." [Wikipedia:Dorsal_mesentery, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Dorsal mesentery" EXACT []
xref: EHDAA:3019
xref: EHDAA:3033
xref: EHDAA:3921
xref: EHDAA:3934
xref: EHDAA:3957
xref: EHDAA:3971
xref: FMA:79795
xref: TAO:0005130
xref: ZFA:0005130
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002095 ! mesentery
[Term]
id: UBERON:0002297
name: cerumen
alt_id: UBERON:FMA_79869-MA_0002506
def: "." [Wikipedia:Cerumen]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cerumen" EXACT []
synonym: "Ear wax" EXACT []
synonym: "ear wax" EXACT []
xref: ENVO:02000028
xref: FMA:79869
xref: GAID:1158
xref: MA:0002506
xref: ncithesaurus:Cerumen
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0002298
name: brainstem
alt_id: UBERON:FMA_79876-MA_0000169
def: "." [Wikipedia:Brainstem]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "brain stem" RELATED []
synonym: "Brainstem" EXACT []
xref: FMA:79876
xref: HOG:0001457
xref: MA:0000169
xref: NIF_GrossAnatomy:birnlex_1565
xref: ZFA:0001707
is_a: UBERON:0002616 ! regional part of brain
relationship: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002299
name: alveolus of lung
alt_id: UBERON:FMA_82493-MA_0000420
def: "Spherical outcropping of the respiratory bronchioles and primary site of gas exchange with the blood. Alveoli are particular to mammalian lungs. Different structures are involved in gas exchange in other vertebrates[WP]." [Wikipedia:Pulmonary_alveolus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "alveolus" RELATED []
synonym: "lung alveolus" EXACT []
synonym: "pulmonary alveolus" RELATED []
xref: BTO:0000060
xref: HOG:0001445
xref: MA:0000420
is_a: UBERON:0003215 ! alveolus
intersection_of: UBERON:0003215 ! alveolus
intersection_of: part_of UBERON:0002048 ! lung
relationship: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0002300
name: ventricle
alt_id: UBERON:FMA_82553-MA_0000818
def: "A chamber of an organ with cavitated organ parts. Examples: right ventricle of heart, lateral ventricle of brain." [Wikipedia:Ventricle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "brain ventricle" EXACT []
synonym: "Ventricle" EXACT []
xref: BTO:0001442
xref: EFO:0000317
xref: EHDAA:1912
xref: FMA:82553
xref: MA:0000818
xref: MAT:0000497
xref: ncithesaurus:Ventricle_Brain
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002301
name: layer of neocortex
alt_id: UBERON:FMA_83138-MA_0000186
comment: This class was created automatically from a combination of ontologies
synonym: "cerebral cortex layer" RELATED []
synonym: "Layer of neocortex" EXACT []
synonym: "Neocortex layer" EXACT []
synonym: "neocortex layer" EXACT []
xref: FMA:83138
xref: MA:0000186
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0001950 ! neocortex
[Term]
id: UBERON:0002302
name: myocardium of atrium
alt_id: UBERON:FMA_83509-MA_0000081-ZFA_0001374
comment: This class was created automatically from a combination of ontologies
synonym: "Atrial myocardium" EXACT []
synonym: "atrial myocardium" EXACT []
synonym: "atrium myocardium" EXACT []
synonym: "Myocardium of atrium" EXACT []
xref: FMA:83509
xref: HOG:0000602
xref: MA:0000081
xref: TAO:0001374
xref: ZFA:0001374
is_a: UBERON:0002349 ! myocardium
intersection_of: UBERON:0002349 ! myocardium
intersection_of: part_of UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0002349 ! myocardium
[Term]
id: UBERON:0002303
name: juxtaglomerular complex
alt_id: UBERON:FMA_83599-MA_0002546
def: "." [Wikipedia:Juxtaglomerular_apparatus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Juxtaglomerular apparatus" EXACT []
synonym: "juxtaglomerular apparatus" RELATED []
synonym: "Juxtaglomerular complex" EXACT []
xref: FMA:83599
xref: GAID:432
xref: MA:0002546
xref: ncithesaurus:Juxtaglomerular_Apparatus
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001225 ! cortex of kidney
[Term]
id: UBERON:0002304
name: layer of dentate gyrus
alt_id: UBERON:FMA_83678-MA_0002429
comment: This class was created automatically from a combination of ontologies
synonym: "Dentate gyrus layer" EXACT []
synonym: "dentate gyrus layer" EXACT []
synonym: "Layer of dentate gyrus" EXACT []
xref: FMA:83678
xref: MA:0002429
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0003876 ! implied link automatically realized ! hippocampal region
relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation
[Term]
id: UBERON:0002305
name: layer of hippocampus
alt_id: UBERON:FMA_83679-MA_0002427
comment: This class was created automatically from a combination of ontologies
synonym: "Hippocampus layer" EXACT []
synonym: "hippocampus layer" EXACT []
synonym: "Layer of hippocampus" EXACT []
xref: FMA:83679
xref: MA:0002427
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000119 ! implied link automatically realized ! cell layer
is_a: UBERON:0003876 ! implied link automatically realized ! hippocampal region
intersection_of: UBERON:0000119 ! cell layer
intersection_of: part_of UBERON:0001954 ! hippocampus
relationship: part_of UBERON:0001954 ! hippocampus
[Term]
id: UBERON:0002306
name: nasal mucus
alt_id: UBERON:FMA_83688-MA_0002535
def: "." [Wikipedia:Nasal_mucus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Nasal mucus" EXACT []
xref: FMA:83688
xref: MA:0002535
xref: ncithesaurus:Nasal_Mucus
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0002307
name: choroid plexus of lateral ventricle
alt_id: UBERON:FMA_83711-MA_0000961
comment: This class was created automatically from a combination of ontologies
synonym: "Chorioid plexus of lateral ventricle" EXACT []
synonym: "chorioid plexus of lateral ventricle" EXACT []
synonym: "Choroid plexus of lateral ventricle" EXACT []
synonym: "lateral ventricle choroid plexus" EXACT []
xref: FMA:83711
xref: MA:0000961
xref: ZFA:0001447
is_a: UBERON:0001886 ! choroid plexus
intersection_of: UBERON:0001886 ! choroid plexus
intersection_of: part_of UBERON:0002285 ! lateral ventricle
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0002308
name: nucleus of brain
alt_id: UBERON:FMA_83840-MA_0000811
def: "Nucleus of neuraxis which is located within the brain. Example: pontobulbar nucleus, globose nucleus[FMA]. brain structure consisting of a relatively compact cluster of neurons. It is one of the two most common forms of nerve cell organization, the other being layered structures such as the cerebral cortex or cerebellar cortex. In anatomical sections, a nucleus shows up as a region of gray matter, often bordered by white matter. The vertebrate brain contains hundreds of distinguishable nuclei, varying widely in shape and size. A nucleus may itself have a complex internal structure, with multiple types of neurons arranged in clumps (subnuclei) or layers.[Wikipedia]" [FMA:83840, Wikipedia:Nucleus_(neuroanatomy)]
comment: This class was created automatically from a combination of ontologies
synonym: "Brain nucleus" EXACT []
synonym: "brain nucleus" EXACT []
synonym: "Nucleus of brain" EXACT []
xref: FMA:83840
xref: MA:0000811
xref: ncithesaurus:Brain_Nucleus
is_a: UBERON:0000125 ! neural nucleus
relationship: part_of UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002309
name: medial longitudinal fasciculus
alt_id: UBERON:FMA_83846-ZFA_0000543
def: "." [Wikipedia:Medial_longitudinal_fasciculus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Medial longitudinal fasciculus" EXACT []
xref: BTO:0003951
xref: FMA:83846
xref: TAO:0000543
xref: ZFA:0000543
is_a: UBERON:0000481 ! multi-tissue structure
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002310
name: fimbria of hippocampus
alt_id: UBERON:FMA_83866-MA_0000949
comment: This class was created automatically from a combination of ontologies
synonym: "fimbria hippocampus" EXACT []
synonym: "Fimbria of hippocampus" EXACT []
synonym: "Neuraxis fimbria" EXACT []
synonym: "neuraxis fimbria" EXACT []
xref: FMA:83866
xref: MA:0000949
xref: NIF_GrossAnatomy:birnlex_1502
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0003876 ! implied link automatically realized ! hippocampal region
relationship: part_of UBERON:0001954 ! hippocampus
[Term]
id: UBERON:0002311
name: nodulus of cerebellum
alt_id: UBERON:FMA_83882-MA_0001007
comment: This class was created automatically from a combination of ontologies
synonym: "cerebellum lobule X" EXACT []
synonym: "cerebellum lobule x" EXACT []
synonym: "Neuraxis nodulus" EXACT []
synonym: "neuraxis nodulus" EXACT []
synonym: "nodulus" RELATED []
synonym: "Nodulus of cerebellum" EXACT []
xref: FMA:83882
xref: MA:0001007
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002312
name: pyramis of vermis of cerebellum
alt_id: UBERON:FMA_83888-MA_0001005
comment: This class was created automatically from a combination of ontologies
synonym: "cerebellum lobule VIII" EXACT []
synonym: "cerebellum lobule viii" EXACT []
synonym: "Neuraxis pyramis" EXACT []
synonym: "neuraxis pyramis" EXACT []
synonym: "Pyramis of vermis of cerebellum" EXACT []
synonym: "pyramus" RELATED []
xref: FMA:83888
xref: MA:0001005
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002313
name: pyramidal layer of hippocampus
alt_id: UBERON:FMA_83895-MA_0000956
comment: This class was created automatically from a combination of ontologies
synonym: "hippocampus pyramidal layer" EXACT []
synonym: "hippocampus stratum pyramidale" RELATED []
synonym: "Pyramidal layer of hippocampus" EXACT []
xref: FMA:83895
xref: MA:0000956
is_a: UBERON:0002305 ! layer of hippocampus
[Term]
id: UBERON:0002314
name: midbrain tectum
alt_id: UBERON:FMA_83902-MA_0000211
def: "." [Wikipedia:Midbrain_tectum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Midbrain tectum" EXACT []
synonym: "Neuraxis tectum" EXACT []
synonym: "neuraxis tectum" EXACT []
synonym: "tectum" EXACT []
xref: EFO:0000920
xref: FMA:83902
xref: GO:0043676
xref: MA:0000211
xref: MAT:0000451
xref: NIF_GrossAnatomy:birnlex_1032
is_a: UBERON:0002950 ! regional part of midbrain
relationship: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0002315
name: gray matter of spinal cord
alt_id: UBERON:FMA_83926-MA_0000002
comment: This class was created automatically from a combination of ontologies
synonym: "Gray matter of spinal cord" EXACT []
synonym: "Grey matter of spinal cord" EXACT []
synonym: "grey matter of spinal cord" EXACT []
synonym: "Grey substance of spinal cord" EXACT []
synonym: "grey substance of spinal cord" EXACT []
synonym: "spinal cord grey matter" EXACT []
xref: FMA:83926
xref: MA:0000002
is_a: UBERON:0002020 ! gray matter of neuraxis
intersection_of: UBERON:0002020 ! gray matter of neuraxis
intersection_of: part_of UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002316
name: white matter of neuraxis
alt_id: UBERON:FMA_83929-MA_0001135
def: "Heterogeneous cluster of neurites in the brain and the spinal cord." [Wikipedia:White_matter]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "White matter" EXACT []
synonym: "white matter" EXACT []
synonym: "White matter of neuraxis" EXACT []
synonym: "White substance" EXACT []
synonym: "white substance" EXACT []
xref: FMA:83929
xref: MA:0001135
xref: ncithesaurus:White_Matter
xref: ZFA:0001682
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0002317
name: white matter of cerebellum
alt_id: UBERON:FMA_83943-MA_0002430
comment: This class was created automatically from a combination of ontologies
synonym: "cerebellum white matter" EXACT []
synonym: "White matter of cerebellum" EXACT []
xref: FMA:83943
xref: MA:0002430
xref: ncithesaurus:Cerebellum_White_Matter
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
intersection_of: UBERON:0002316 ! white matter of neuraxis
intersection_of: part_of UBERON:0002037 ! cerebellum
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002318
name: white matter of spinal cord
alt_id: UBERON:FMA_83945-MA_0000910
comment: This class was created automatically from a combination of ontologies
synonym: "spinal cord white matter" EXACT []
synonym: "White matter of spinal cord" EXACT []
xref: FMA:83945
xref: MA:0000910
is_a: UBERON:0002316 ! white matter of neuraxis
intersection_of: UBERON:0002316 ! white matter of neuraxis
intersection_of: part_of UBERON:0002240 ! spinal cord
relationship: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0002319
name: mesangium
alt_id: UBERON:FMA_84139-MA_0002617
def: "inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries." [Wikipedia:Mesangium]
comment: WP considers this the same as glomerular mesangium
subset: uberon_slim
synonym: "Mesangium" EXACT []
xref: BTO:0002494
xref: FMA:84139
xref: MA:0002617
xref: ncithesaurus:Mesangium
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0002320
name: glomerular mesangium
alt_id: UBERON:FMA_84140-MA_0002606
def: "A thin membrane which helps to support the capillary loops in a renal glomerulus. It is connective tissue composed of mesangial cells - myofibroblasts phenotypically related to vascular smooth muscle cells (MUSCLE, SMOOTH, VASCULAR), PHAGOCYTES and the mesangial EXTRACELLULAR MATRIX." [MESH:A.05.810.453.736.520.380, Wikipedia:Glomerular_mesangium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Glomerular mesangium" EXACT []
xref: FMA:84140
xref: GAID:430
xref: MA:0002606
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002319 ! mesangium
[Term]
id: UBERON:0002321
name: extraglomerular mesangium
alt_id: UBERON:FMA_84141-MA_0002602
comment: This class was created automatically from a combination of ontologies
synonym: "Extraglomerular mesangium" EXACT []
xref: FMA:84141
xref: MA:0002602
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001229 ! renal corpuscle
relationship: part_of UBERON:0002303 ! juxtaglomerular complex
relationship: part_of UBERON:0002319 ! mesangium
[Term]
id: UBERON:0002322
name: periventricular nucleus
alt_id: UBERON:FMA_84354-ZFA_0000260
def: "." [Wikipedia:Periventricular_nucleus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Periventricular nucleus" EXACT []
xref: FMA:84354
xref: TAO:0000260
xref: ZFA:0000260
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002323
name: body cavity
alt_id: UBERON:0000169
alt_id: UBERON:FMA_85006-MA_0002447-ZFA_0001438
def: "fluid-filled space between epidermis and outer lining of gut cavity." [Wikipedia:Body_cavity]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Body cavity" EXACT []
synonym: "coelom" EXACT []
synonym: "coelomic cavity" EXACT []
synonym: "ventral body cavity" NARROW []
xref: BTO:0001707
xref: FBbt:00005060
xref: FMA:85006
xref: galen:BodyCavity
xref: MA:0002447
xref: ncithesaurus:Cavity
xref: TAO:0001438
xref: ZFA:0001438
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0002324
name: muscle of back
alt_id: UBERON:FMA_85216-MA_0000496
comment: This class was created automatically from a combination of ontologies
synonym: "Back muscle" EXACT []
synonym: "back muscle" EXACT []
synonym: "Muscle of back" EXACT []
xref: FMA:85216
xref: MA:0000496
is_a: UBERON:0001774 ! muscle of trunk
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001137 ! back
relationship: part_of UBERON:0001137 ! back
[Term]
id: UBERON:0002325
name: epithelium of urethra
alt_id: UBERON:FMA_85275-MA_0001686
comment: This class was created automatically from a combination of ontologies
synonym: "Epithelium of urethra" EXACT []
synonym: "urethra epithelium" EXACT []
synonym: "Urethral epithelium" EXACT []
synonym: "urethral epithelium" RELATED []
xref: FMA:85275
xref: MA:0001686
xref: ncithesaurus:Urethra_Epithelium
is_a: UBERON:0000483 ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0002326
name: lamina propria of urethra
alt_id: UBERON:FMA_85276-MA_0001689
comment: This class was created automatically from a combination of ontologies
synonym: "Lamina propria of urethra" EXACT []
synonym: "urethra lamina propria" EXACT []
synonym: "urethral lamina propria" RELATED []
xref: FMA:85276
xref: MA:0001689
is_a: UBERON:0000030 ! lamina propria
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0000057 ! urethra
relationship: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0002327
name: trunk of intercostal nerve
alt_id: UBERON:FMA_85315-MA_0001176
comment: This class was created automatically from a combination of ontologies
synonym: "intercostal nerve trunk" EXACT []
synonym: "Intercostal neural trunk" EXACT []
synonym: "intercostal neural trunk" EXACT []
synonym: "Trunk of intercostal nerve" EXACT []
xref: FMA:85315
xref: MA:0001176
is_a: UBERON:0001147 ! trunk of peripheral nerve
[Term]
id: UBERON:0002328
name: notochord
alt_id: UBERON:FMA_85521-XAO_0000055-ZFA_0000135
def: "A longitudinal flexible rod of cells that in the embryo forms the supporting axis of the body. It degenerates, beginning anteriorly, at NF stage 46. Its posterior portion is greatly reduced by NF stage 55 and the entire structure is gone by NF stage 65. // Rod-like principal supportive element of the embryo and larva, present in the midline just ventral to the neural tube, and differentiating during the segmentation period to form large vacuolated epithelial cells and a surrounding a sheath of fibrous and elastic layers. Layering of the sheath may differ in structure, thickness and development among groups; in cypriniforms there are actually three very thin layers to the sheath. A functional, well developed notochord is present throughout life in certain basal fish groups but not in cypriniforms. Kimmel et al, 1995." [ISBN:0815318960, NLM:notochord, Wikipedia:Notochord, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Chordamesoderm" EXACT []
synonym: "chordamesoderm" EXACT []
synonym: "Notochord" EXACT []
synonym: "notocord" RELATED []
xref: AAO:0000327
xref: BTO:0001768
xref: EHDAA:1241
xref: EHDAA:6021
xref: FMA:85521
xref: GAID:1311
xref: HOG:0000199
xref: MAT:0000281
xref: ncithesaurus:Notochord
xref: TAO:0000135
xref: XAO:0000055
xref: ZFA:0000135
is_a: UBERON:0000479 ! portion of tissue
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: develops_from UBERON:0003068 ! axial mesoderm
relationship: part_of UBERON:0000922 ! embryo
relationship: part_of UBERON:0002021 ! occipital lobe
relationship: part_of UBERON:0002543 ! median fin skeleton
[Term]
id: UBERON:0002329
name: somite
alt_id: UBERON:FMA_85522-MIAA_0000068-XAO_0000058-ZFA_0000155
def: "Portion of mesoderm distributed along the two sides of the neural tube and that will eventually become dermis (dermatome), skeletal muscle (myotome), and vertebrae (sclerotome)[WP]. In Zebrafish: Any of the approximately 45 bilaterally paired blocks of mesoderm cells, lying on either side of the notochord and neural tube, and forming sequentially starting at the head during development of the embryo. Together they give rise to the axial skeleton (from the sclerotome), associated musculature (from the myotome), and dermis (from the dermatome). // Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes. Kimmel et al, 1995." [OMD:somite, Wikipedia:Somite, XB:curator, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Somite" EXACT []
synonym: "somites" RELATED []
synonym: "somitic mesoderm" RELATED []
xref: BTO:0001558
xref: EHDAA:366
xref: EHDAA:699
xref: FMA:85522
xref: GAID:1306
xref: HOG:0000191
xref: MAT:0000068
xref: MIAA:0000068
xref: ncithesaurus:Somite
xref: TAO:0000155
xref: XAO:0000058
xref: ZFA:0000155
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0003059 ! presomitic mesoderm
relationship: part_of UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0002330
name: exocrine system
alt_id: UBERON:FMA_85539-MA_0002411
def: "Anatomical system that consists of the glands and parts of glands that produce exocrine secretions and help to integrate and control bodily metabolic activity. Exocrine glands are glands that secrete their products (hormones) into ducts (duct glands). They are the counterparts to endocrine glands, which secrete their products (hormones) directly into the bloodstream (ductless glands) or release hormones (paracrines) that affect only target cells nearby the release site. [Wikipedia]." [Wikipedia:Exocrine_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Exocrine system" EXACT []
xref: FMA:85539
xref: MA:0002411
xref: ncithesaurus:Exocrine_System
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
[Term]
id: UBERON:0002331
name: umbilical cord
alt_id: UBERON:FMA_85541-MIAA_0000280
def: "." [Wikipedia:Umbilical_cord]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "connecting stalk" RELATED []
synonym: "Umbilical cord" EXACT []
xref: BTO:0001415
xref: EFO:0001415
xref: FMA:85541
xref: GAID:517
xref: MAT:0000280
xref: MIAA:0000280
xref: ncithesaurus:Umbilical_Cord
is_a: UBERON:0000478 ! extraembryonic structure
[Term]
id: UBERON:0002333
name: pulmonary trunk
alt_id: UBERON:FMA_8612-MA_0002033
def: "Pulmonary arterial trunk which is continuous with the right ventricle." [Wikipedia:Pulmonary_trunk]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pulmonary artery (trunk)" EXACT []
synonym: "pulmonary artery (trunk)" EXACT []
synonym: "Pulmonary trunk" EXACT []
synonym: "Trunk of pulmonary arterial tree" EXACT []
synonym: "trunk of pulmonary arterial tree" EXACT []
xref: EFO:0001399
xref: FMA:8612
xref: HOG:0001134
xref: MA:0002033
xref: OpenCyc:Mx4rv-6d0ZwpEbGdrcN5Y29ycA
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0002334
name: submandibular duct
alt_id: UBERON:FMA_86266-MA_0002698
def: "." [Wikipedia:Submandibular_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Submandibular duct" EXACT []
xref: FMA:86266
xref: MA:0002698
xref: ncithesaurus:Submandibular_Duct
is_a: UBERON:0001837 ! duct of salivary gland
relationship: part_of UBERON:0001736 ! submandibular gland
[Term]
id: UBERON:0002335
name: macula densa
alt_id: UBERON:FMA_86333-MA_0002603
def: "." [Wikipedia:Macula_densa]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Macula densa" EXACT []
xref: BTO:0003940
xref: FMA:86333
xref: MA:0002603
xref: ncithesaurus:Macula_Densa
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002303 ! juxtaglomerular complex
[Term]
id: UBERON:0002336
name: corpus callosum
alt_id: UBERON:FMA_86464-MA_0000188-MIAA_0000286
def: "The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provides communications between the right and left cerebral hemispheres[GO]." [Wikipedia:Corpus_callosum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Corpus callosum" EXACT []
xref: BTO:0000615
xref: EFO:0001390
xref: FMA:86464
xref: GAID:683
xref: MA:0000188
xref: MAT:0000286
xref: MIAA:0000286
xref: ncithesaurus:Corpus_Callosum
xref: NIF_GrossAnatomy:birnlex_1087
xref: NIF_GrossAnatomy:birnlex_1498
xref: OpenCyc:Mx4rvbNzdZwpEbGdrcN5Y29ycA
is_a: UBERON:0002473 ! intercerebral commissure
[Term]
id: UBERON:0002337
name: endometrial stroma
alt_id: UBERON:FMA_86487-MA_0002734
comment: This class was created automatically from a combination of ontologies
synonym: "Endometrial stroma" EXACT []
synonym: "endometrium stroma" EXACT []
synonym: "Stroma of endometrium" EXACT []
synonym: "stroma of endometrium" EXACT []
xref: FMA:86487
xref: MA:0002734
xref: ncithesaurus:Endometrial_Stroma
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001295 ! endometrium
[Term]
id: UBERON:0002338
name: lamina propria of bronchus
alt_id: UBERON:FMA_86619-MA_0001836
comment: This class was created automatically from a combination of ontologies
synonym: "bronchus lamina propria" EXACT []
synonym: "Lamina propria of bronchus" EXACT []
xref: FMA:86619
xref: MA:0001836
xref: ncithesaurus:Bronchus_Lamina_Propria
is_a: UBERON:0000030 ! lamina propria
is_a: UBERON:0003592 ! implied link automatically realized ! bronchus connective tissue
intersection_of: UBERON:0000030 ! lamina propria
intersection_of: part_of UBERON:0002185 ! bronchus
relationship: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0002339
name: epithelium of lobar bronchus
alt_id: UBERON:FMA_86624-MA_0001842
comment: This class was created automatically from a combination of ontologies
synonym: "Epithelium of lobar bronchus" EXACT []
synonym: "Lobar bronchial epithelium" EXACT []
synonym: "lobar bronchial epithelium" EXACT []
synonym: "lobar bronchus epithelium" EXACT []
xref: FMA:86624
xref: MA:0001842
is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium
is_a: UBERON:0002031 ! epithelium of bronchus
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002183 ! lobar bronchus
relationship: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0002340
name: epithelium of main bronchus
alt_id: UBERON:0003245
alt_id: UBERON:FMA_86625-MA_0001847
comment: This class was created automatically from a combination of ontologies
synonym: "Epithelium of main bronchus" EXACT []
synonym: "Main bronchial epithelium" EXACT []
synonym: "main bronchial epithelium" EXACT []
synonym: "main bronchus epithelium" EXACT []
xref: EHDAA:5003
xref: FMA:86625
xref: HOG:0001034
xref: MA:0001847
is_a: UBERON:0002031 ! epithelium of bronchus
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002182 ! main bronchus
relationship: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0002341
name: epithelium of segmental bronchus
alt_id: UBERON:FMA_86626-MA_0001850
comment: This class was created automatically from a combination of ontologies
synonym: "Epithelium of segmental bronchus" EXACT []
synonym: "Segmental bronchial epithelium" EXACT []
synonym: "segmental bronchial epithelium" EXACT []
synonym: "segmental bronchus epithelium" EXACT []
xref: FMA:86626
xref: MA:0001850
is_a: UBERON:0002031 ! epithelium of bronchus
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002184 ! segmental bronchus
relationship: part_of UBERON:0002184 ! segmental bronchus
[Term]
id: UBERON:0002342
name: neural crest
alt_id: UBERON:FMA_86666-MIAA_0000066-XAO_0000048-ZFA_0000045
def: "A group of embryonic cells that loosen and separate from the neural plate and surrounding epidermis during neurulation and migrate to give several different lineages of adult cells. Wikipedia: The neural crest, a transient component of the ectoderm, is located in between the neural tube and the epidermis (or the free margins of the neural folds) of an embryo during neural tube formation. Neural crest cells quickly migrate during or shortly after neurulation, an embryological event marked by neural tube closure." [ISBN:0815318960, OMD:neural+crest, Wikipedia:Neural_crest, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Neural crest" EXACT []
xref: BTO:0001764
xref: EHDAA:1334
xref: EHDAA:1348
xref: EHDAA:1354
xref: EHDAA:1379
xref: EHDAA:1389
xref: EHDAA:1399
xref: EHDAA:1414
xref: EHDAA:1429
xref: EHDAA:1439
xref: EHDAA:1449
xref: EHDAA:1500
xref: EHDAA:1989
xref: EHDAA:2011
xref: EHDAA:2023
xref: EHDAA:2045
xref: EHDAA:2067
xref: EHDAA:2079
xref: EHDAA:2091
xref: EHDAA:2813
xref: EHDAA:2827
xref: EHDAA:2921
xref: EHDAA:308
xref: EHDAA:324
xref: EHDAA:3510
xref: EHDAA:3666
xref: EHDAA:3682
xref: EHDAA:838
xref: EHDAA:862
xref: EHDAA:872
xref: EHDAA:882
xref: EHDAA:892
xref: EHDAA:906
xref: FMA:86666
xref: GAID:1310
xref: HOG:0000057
xref: MAT:0000066
xref: MIAA:0000066
xref: ncithesaurus:Neural_Crest
xref: TAO:0000045
xref: XAO:0000048
xref: ZFA:0000045
is_a: UBERON:0002346 ! neural ectoderm
[Term]
id: UBERON:0002343
name: musculature of abdomen
alt_id: UBERON:FMA_86917-ZFA_0001327
comment: TODO - check musculature vs muscle system; part_of vs is_a
synonym: "Abdominal musculature" EXACT []
synonym: "abdominal musculature" EXACT []
synonym: "Musculature of abdomen" EXACT []
xref: FMA:86917
xref: TAO:0001327
xref: ZFA:0001327
is_a: UBERON:0001630 ! muscle organ
relationship: part_of UBERON:0001015 ! muscle system
[Term]
id: UBERON:0002345
name: descending thoracic aorta
alt_id: UBERON:FMA_87217-MA_0002572
comment: This class was created automatically from a combination of ontologies
synonym: "Descending thoracic aorta" EXACT []
xref: EFO:0002527
xref: FMA:87217
xref: MA:0002572
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001514 ! descending aorta
relationship: part_of UBERON:0001515 ! thoracic aorta
[Term]
id: UBERON:0002346
name: neural ectoderm
alt_id: UBERON:FMA_87657-MIAA_0000176-XAO_0000042-ZFA_0001120
def: "The first stage of neural differentiation of ectoderm - it gives rise to the neural and neural crest cells, // Embryonic ectoderm that gives rise to nervous tissue." [NLM:neuroectoderm, Wikipedia:Neuroectoderm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "neuaral ectoderm" RELATED []
synonym: "Neural ectoderm" EXACT []
synonym: "neurectoderm" EXACT []
synonym: "neuroectoderm" EXACT []
synonym: "presumptive central nervous system" RELATED []
xref: BILA:0000039
xref: EHDAA:1498
xref: EHDAA:255
xref: FBbt:00001061
xref: FMA:87657
xref: HOG:0000150
xref: MAT:0000176
xref: MIAA:0000176
xref: ncithesaurus:Neuroectoderm
xref: TAO:0001120
xref: XAO:0000042
xref: ZFA:0001120
is_a: UBERON:0000923 ! germ layer
relationship: part_of UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0002347
name: thoracic vertebra
alt_id: UBERON:FMA_9139-MA_0000314
def: "." [Wikipedia:Thoracic_vertebra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Dorsal vertebra" EXACT []
synonym: "dorsal vertebra" EXACT []
synonym: "Thoracic vertebra" EXACT []
synonym: "Vertebra thoracica" EXACT []
synonym: "vertebra thoracica" EXACT []
xref: FMA:9139
xref: GAID:244
xref: MA:0000314
xref: ncithesaurus:Thoracic_Vertebra
xref: OpenCyc:Mx4rvdZIBpwpEbGdrcN5Y29ycA
is_a: UBERON:0002412 ! vertebra
is_a: UBERON:0003827 ! implied link automatically realized ! thoracic segment bone
is_a: UBERON:0003837 ! implied link automatically realized ! thoracic segment connective tissue
intersection_of: UBERON:0002412 ! vertebra
intersection_of: part_of UBERON:0000915 ! thorax
relationship: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0002348
name: epicardium
alt_id: UBERON:FMA_9461-XAO_0000316-ZFA_0005057
def: "Region of visceral serous pericardium which has as its part, the mesothelium, subepicardial layer of epicardium and the fibroelastic connective tissue that is attached to the myocardium and is continuous with the parietal serous pericardium. // External layer of the heart." [Wikipedia:Epicardium, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Epicardium" EXACT []
synonym: "heart epicardium" EXACT []
synonym: "Visceral serous pericardium of heart" EXACT []
synonym: "visceral serous pericardium of heart" EXACT []
xref: FMA:9461
xref: galen:Epicardium
xref: ncithesaurus:Epicardium
xref: TAO:0005057
xref: XAO:0000316
xref: ZFA:0005057
is_a: UBERON:0000064 ! organ part
relationship: develops_from UBERON:0001048 ! primordium
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002349
name: myocardium
alt_id: UBERON:FMA_9462-MA_0000164-XAO_0000065-ZFA_0001319
def: "middle muscular layer of the heart wall[M-W]. Muscle layer of organ which has as its parts the myocardium proper and the conducting system of the heart[FMA]." [Wikipedia:Myocardium]
comment: TODO - check 'Myocardum proper' in FMA. We superclass the more generic class for now. FMA has is_a muscle layer - should we add this?
subset: uberon_slim
synonym: "cardiac muscle" EXACT [ZFA:0001319]
synonym: "Heart muscle" EXACT []
synonym: "heart muscle" EXACT []
synonym: "heart myocardium" EXACT []
synonym: "Muscle of heart" EXACT []
synonym: "muscle of heart" EXACT []
synonym: "Myocardium" EXACT []
xref: BTO:0000901
xref: EFO:0000819
xref: EHDAA:1275
xref: EHDAA:1283
xref: EHDAA:1926
xref: EHDAA:1934
xref: EHDAA:3383
xref: EHDAA:3395
xref: EHDAA:430
xref: EHDAA:446
xref: EHDAA:454
xref: EHDAA:462
xref: EHDAA:470
xref: EHDAA:478
xref: EHDAA:5347
xref: EHDAA:5356
xref: EHDAA:776
xref: EHDAA:784
xref: EHDAA:792
xref: EHDAA:804
xref: EHDAA:812
xref: FMA:9462
xref: GAID:173
xref: MA:0000164
xref: MAT:0000453
xref: ncithesaurus:Myocardium
xref: OpenCyc:Mx4ro36AFrCvEduAAAAOpmP6tw
xref: TAO:0001319
xref: XAO:0000065
xref: ZFA:0001319
is_a: UBERON:0001015 ! muscle system
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002350
name: conducting system of heart
alt_id: UBERON:FMA_9476-ZFA_0005063
def: "Conducting tissue of heart which consists of specialized cardiac myocyte in the myocardium." []
comment: This class was created automatically from a combination of ontologies
synonym: "Cardiac conduction system" EXACT []
synonym: "cardiac conduction system" EXACT []
synonym: "Cardionector" EXACT []
synonym: "cardionector" EXACT []
synonym: "central conduction system" RELATED []
synonym: "Conducting system of heart" EXACT []
xref: FMA:9476
xref: HOG:0001271
xref: TAO:0005063
xref: ZFA:0005063
is_a: UBERON:0001133 ! cardiac muscle tissue
[Term]
id: UBERON:0002351
name: sinuatrial node
alt_id: UBERON:FMA_9477-MA_0000097-ZFA_0005069
def: "part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays electrical signals to the AV node[GO]. Subdivision of conducting system of heart at the junction of the right atrium and the superior vena cava, around the sinoatrial nodal branch of right coronary artery and is continuous with the internodal tract[FMA]." [GO:0003163, Wikipedia:Sinoatrial_node]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Koch's node" EXACT []
synonym: "koch's node" EXACT []
synonym: "Node of Keith-Flack" EXACT []
synonym: "node of keith-flack" EXACT []
synonym: "SA nodal muscle tissue" EXACT []
synonym: "sa nodal muscle tissue" EXACT []
synonym: "SA node" EXACT []
synonym: "sa node" EXACT []
synonym: "Sinoatrial node" EXACT []
synonym: "sinoatrial node" EXACT []
synonym: "Sinu-atrial node" EXACT []
synonym: "sinu-atrial node" EXACT []
synonym: "Sinuatrial nodal muscle tissue" EXACT []
synonym: "sinuatrial nodal muscle tissue" EXACT []
synonym: "Sinuatrial node" EXACT []
synonym: "Sinus node" EXACT []
synonym: "sinus node" EXACT []
synonym: "Sinus node of Keith and Flack" EXACT []
synonym: "sinus node of keith and flack" EXACT []
xref: FMA:9477
xref: GAID:561
xref: MA:0000097
xref: ncithesaurus:Sinoatrial_Node
xref: OpenCyc:Mx4rOhejDGMcEd2AAABQjYGu0g
xref: TAO:0005069
xref: ZFA:0005069
is_a: UBERON:0001133 ! cardiac muscle tissue
relationship: part_of UBERON:0002350 ! conducting system of heart
[Term]
id: UBERON:0002352
name: atrioventricular node
alt_id: UBERON:FMA_9478-MA_0000095-ZFA_0005070
def: "Subdivision of conducting system of heart which is located in the muscular part of the interatrial septum that is continuous with the atrioventricular bundle." [Wikipedia:Atrioventricular_node]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Aschoff-Tawara node" EXACT []
synonym: "aschoff-tawara node" EXACT []
synonym: "Atrioventricular nodal muscle tissue" EXACT []
synonym: "atrioventricular nodal muscle tissue" EXACT []
synonym: "Atrioventricular node" EXACT []
synonym: "AV nodal muscle tissue" EXACT []
synonym: "av nodal muscle tissue" EXACT []
synonym: "AV node" EXACT []
synonym: "av node" EXACT []
synonym: "Node of Tawara" EXACT []
synonym: "node of tawara" EXACT []
xref: EFO:0000276
xref: FMA:9478
xref: GAID:558
xref: HOG:0001474
xref: MA:0000095
xref: MAT:0000498
xref: ncithesaurus:Atrioventricular_Node
xref: OpenCyc:Mx4rMfD91mMcEd2AAABQjYGu0g
xref: TAO:0005070
xref: ZFA:0005070
is_a: UBERON:0001133 ! cardiac muscle tissue
relationship: part_of UBERON:0002081 ! cardiac atrium
relationship: part_of UBERON:0002082 ! cardiac ventricle
relationship: part_of UBERON:0002350 ! conducting system of heart
[Term]
id: UBERON:0002353
name: atrioventricular bundle
alt_id: UBERON:FMA_9484-MA_0002576
def: "Subdivision of conducting system of heart which consists of the atrial part and the ventricular part of the atrioventricular bundle and is the direct continuation of the atrioventricular node." [Wikipedia:Bundle_of_His]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Atrioventricular bundle" EXACT []
synonym: "Atrioventricular bundle muscle tissue" EXACT []
synonym: "atrioventricular bundle muscle tissue" EXACT []
synonym: "Atrioventricular fasciculus" EXACT []
synonym: "atrioventricular fasciculus" EXACT []
synonym: "Bundle of His" EXACT []
synonym: "bundle of his" RELATED []
synonym: "His bundle" RELATED []
xref: FMA:9484
xref: GAID:559
xref: galen:BundleOfHis
xref: MA:0002576
xref: ncithesaurus:Atrioventricular_Bundle
xref: OpenCyc:Mx4rUv1WcGPJEd2AAABQjYGu0g
is_a: UBERON:0001133 ! cardiac muscle tissue
relationship: part_of UBERON:0002350 ! conducting system of heart
[Term]
id: UBERON:0002354
name: purkinje fiber
alt_id: UBERON:FMA_9492-MA_0000096
def: "Conducting tissue of heart which consists of Purkinje myocytes." [Wikipedia:Purkinje_fiber]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Myofibra conducens cardiacus" EXACT []
synonym: "myofibra conducens cardiacus" EXACT []
synonym: "Purkinje fiber" EXACT []
xref: FMA:9492
xref: GAID:560
xref: MA:0000096
xref: ncithesaurus:Purkinje_Fiber
is_a: UBERON:0001133 ! cardiac muscle tissue
relationship: part_of UBERON:0002350 ! conducting system of heart
[Term]
id: UBERON:0002355
name: pelvis
alt_id: UBERON:FMA_9578-MA_0000030
def: "Subdivision of trunk, which is demarcated from the abdomen by the plane of the superior pelvic aperture, and from the perineum by the inferior surface of the pelvic diaphragm; together with the thorax, abdomen, and perineum, it constitutes the trunk. Examples: There is only one pelvis." [Wikipedia:Pelvis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pelvis" EXACT []
xref: BTO:0001006
xref: FMA:9578
xref: GAID:87
xref: MA:0000030
xref: ncithesaurus:Pelvis
xref: OpenCyc:Mx4rvVjiTJwpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0002356
name: perineum
alt_id: UBERON:FMA_9579-MA_0002466
def: "Subdivision of trunk, which is demarcated from the pelvis by the inferior surface of the pelvic diaphragm and from the lower limbs by the perineofemoral lines; together with the thorax, abdomen, and pelvis, it constitutes the trunk. Examples: There is only one perineum." [Wikipedia:Perineum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Perineal region" EXACT []
synonym: "perineal region" EXACT []
synonym: "Perineum" EXACT []
xref: FMA:9579
xref: GAID:90
xref: MA:0002466
xref: ncithesaurus:Perineum
xref: OpenCyc:Mx4rvcHSh5wpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0002357
name: serous pericardium
alt_id: UBERON:FMA_9582-MA_0002739
def: "Serous membrane which has as its parts the epicardium and parietal serous pericardium that surrounds pericardial cavity." [Wikipedia:Serous_pericardium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Serous pericardium" EXACT []
synonym: "Serous portion of pericardium" EXACT []
synonym: "serous portion of pericardium" EXACT []
xref: FMA:9582
xref: MA:0002739
is_a: UBERON:0000042 ! serous membrane
relationship: part_of UBERON:0002406 ! pericardial sac
[Term]
id: UBERON:0002358
name: peritoneum
alt_id: UBERON:FMA_9584-XAO_0000139-ZFA_0005120
def: "A serous membrane that forms the lining of the abdominal cavity or the coelom — it covers most of the intra-abdominal (or coelomic) organs — in higher vertebrates and some invertebrates (annelids, for instance). It is composed of a layer of mesothelium supported by a thin layer of connective tissue. The peritoneum both supports the abdominal organs and serves as a conduit for their blood and lymph vessels and nerves[WP]." [Wikipedia:Peritoneum, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Peritoneum" EXACT []
xref: BTO:0001472
xref: FMA:9584
xref: GAID:18
xref: HOG:0001257
xref: ncithesaurus:Peritoneum
xref: TAO:0005120
xref: XAO:0000139
xref: ZFA:0005120
is_a: UBERON:0000042 ! serous membrane
is_a: UBERON:0000483 ! epithelium
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0003684 ! abdominal cavity
[Term]
id: UBERON:0002359
name: fibrous pericardium
alt_id: UBERON:FMA_9586-MA_0002738
def: "Membrane organ which is attached to the pericardial sac proper and the central tendon of diaphragm and is continuous with the pretracheal fascia." [Wikipedia:Fibrous_pericardium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Fibrous pericardium" EXACT []
synonym: "Fibrous portion of pericardium" EXACT []
synonym: "fibrous portion of pericardium" EXACT []
xref: FMA:9586
xref: MA:0002738
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0002407 ! pericardium
[Term]
id: UBERON:0002360
name: meninx
alt_id: UBERON:FMA_9589-MA_0001113
def: "Membrane organ that surrounds the brain and the spinal cord // Wikipedia: system of membranes which envelops the central nervous system. Whereas cyclostomes and fishes only have a single envelope called the primitive meninx, amphibians have two layers, consisting of an outer dura mater which is extremely dense and protective, and a pia-arachnoid or secondary meninx which is more delicate and vascular. Mammals have three meninges: pia mater (which follows all the convolutions of the brain and is the most interior), the arachnoid layer (which is delicate and sends strands to the pia mater), and the dura mater (the outer, more protective meninx). The area between the dura mater and the arachnoid layer is called the subdural space; the area between the arachnoid layer is called the subarachnoid space. An additional layer of tissue lies between the two hemispheres of the cerebrum and is called the falx cerebri. " [http://www.shsu.edu/~bio_mlt/Chap15.html, Wikipedia:Meninx]
comment: TODO: check singular/plural
subset: uberon_slim
synonym: "meninges" EXACT []
synonym: "Meninx" EXACT []
xref: BTO:0000144
xref: EFO:0000584
xref: EFO:0000867
xref: EHDAA:1365
xref: EHDAA:1959
xref: EHDAA:1999
xref: EHDAA:2097
xref: EHDAA:2683
xref: EHDAA:2831
xref: EHDAA:2865
xref: EHDAA:3688
xref: EHDAA:3708
xref: EHDAA:5458
xref: EHDAA:5476
xref: FMA:9589
xref: GAID:687
xref: HOG:0001295
xref: MA:0001113
xref: MAT:0000113
xref: ncithesaurus:Meninges
xref: ZFA:0001355
is_a: UBERON:0000062 ! organ
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0002361
name: pia mater
alt_id: UBERON:FMA_9590-MA_0001116
def: "delicate innermost layer of the meninges—the membranes surrounding the brain and spinal cord. The thin, mesh-like pia mater closely envelops the entire surface of the brain, running down into the fissures of the cortex. It joins with the ependyma which lines the ventricles to form choroid plexuses that produce cerebrospinal fluid. In the spinal cord, the pia mater attaches to the dura mater by the denticular ligaments through the arachnoid membrane. The pia mater is a neural crest derivative." [Wikipedia:Pia_mater]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pia mater" EXACT []
synonym: "Pia mater of neuraxis" EXACT []
synonym: "pia mater of neuraxis" EXACT []
xref: BTO:0001635
xref: EHDAA:1367
xref: EHDAA:1961
xref: EHDAA:2001
xref: EHDAA:2099
xref: EHDAA:2685
xref: EHDAA:2833
xref: EHDAA:2867
xref: EHDAA:3692
xref: EHDAA:3710
xref: EHDAA:6566
xref: EHDAA:6583
xref: FMA:9590
xref: GAID:693
xref: MA:0001116
xref: ncithesaurus:Pia_Mater
is_a: UBERON:0002360 ! meninx
relationship: part_of UBERON:0002360 ! meninx
[Term]
id: UBERON:0002362
name: arachnoid mater
alt_id: UBERON:FMA_9591-MA_0001114
def: "One of the three meninges, the membranes that cover the brain and spinal cord. It is interposed between the two other meninges, the more superficial dura mater and the deeper pia mater, and is separated from the pia mater by the subarachnoid space." [Wikipedia:Arachnoid_mater]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Arachnoid" EXACT []
synonym: "arachnoid" EXACT []
synonym: "Arachnoid mater" EXACT []
synonym: "Arachnoid mater of neuraxis" EXACT []
synonym: "arachnoid mater of neuraxis" EXACT []
xref: BTO:0001636
xref: FMA:9591
xref: GAID:688
xref: MA:0001114
xref: ncithesaurus:Arachnoiditis
xref: OpenCyc:Mx4rve5HlJwpEbGdrcN5Y29ycA
is_a: UBERON:0002360 ! meninx
[Term]
id: UBERON:0002363
name: dura mater
alt_id: UBERON:FMA_9592-MA_0001115
def: "the outermost of the three layers of the meninges surrounding the brain and spinal cord. The other two meningeal layers are the pia mater and the arachnoid mater. The dura surrounds the brain and the spinal cord and is responsible for keeping in the cerebrospinal fluid." [Wikipedia:Dura_mater]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Dura mater" EXACT []
synonym: "Dura mater of neuraxis" EXACT []
synonym: "dura mater of neuraxis" EXACT []
xref: BTO:0001637
xref: FMA:9592
xref: GAID:691
xref: MA:0001115
xref: ncithesaurus:Dura_Mater
is_a: UBERON:0002360 ! meninx
relationship: part_of UBERON:0002360 ! meninx
[Term]
id: UBERON:0002364
name: tympanic membrane
alt_id: UBERON:FMA_9595-MA_0000257
def: "." [Wikipedia:Tympanic_membrane]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ear drum" EXACT []
synonym: "ear drum" EXACT []
synonym: "Lateral wall of tympanic cavity" EXACT []
synonym: "lateral wall of tympanic cavity" EXACT []
synonym: "Membranous wall of tympanic cavity" EXACT []
synonym: "membranous wall of tympanic cavity" EXACT []
synonym: "Rivinus' membrane" EXACT []
synonym: "rivinus' membrane" EXACT []
synonym: "Tympanic membrane" EXACT []
xref: FMA:9595
xref: GAID:870
xref: HOG:0001146
xref: MA:0000257
xref: ncithesaurus:Tympanic_Membrane
is_a: UBERON:0000020 ! implied link automatically realized ! sense organ
is_a: UBERON:0000094 ! membrane organ
relationship: part_of UBERON:0001756 ! middle ear
[Term]
id: UBERON:0002365
name: exocrine gland
alt_id: UBERON:FMA_9596-MA_0002564
def: "." [Wikipedia:Exocrine_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ducted gland" EXACT []
synonym: "ducted gland" EXACT []
synonym: "Exocrine gland" EXACT []
synonym: "exocrine gland" EXACT []
synonym: "Glandula exocrina" EXACT []
synonym: "glandula exocrina" EXACT []
xref: BTO:0000765
xref: FMA:9596
xref: GAID:34
xref: MA:0002564
xref: ncithesaurus:Exocrine_Gland
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0002366
name: bulbo-urethral gland
alt_id: UBERON:FMA_9599-MA_0000401
def: "Lobular organ the parenchyma of which consists of glandular acini which communicate the bulbar part of the urethra. Examples: There only two instances, right and left bulbo-urethral glands." [Wikipedia:Bulbo-urethral_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bulbo-urethral gland" EXACT []
synonym: "Bulbourethral gland" EXACT []
synonym: "bulbourethral gland" EXACT []
synonym: "Cowper's gland" EXACT []
synonym: "cowper's gland" EXACT []
synonym: "Cowper's glands" EXACT []
synonym: "cowper's glands" EXACT []
xref: BTO:0001698
xref: FMA:9599
xref: GAID:387
xref: MA:0000401
is_a: UBERON:0001338 ! implied link automatically realized ! urethral gland
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0000990 ! reproductive system
relationship: part_of UBERON:0001333 ! male urethra
relationship: part_of UBERON:0002330 ! exocrine system
[Term]
id: UBERON:0002367
name: prostate
alt_id: UBERON:FMA_9600-MA_0000404-MIAA_0000078
def: "Lobular organ the parenchyma of which has as its parts glandular acini which are continuous with the prostatic part of the urethra. Examples: There is only one prostate." [Wikipedia:Prostate]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Prostate" EXACT []
synonym: "prostate gland" EXACT []
xref: BTO:0001129
xref: EFO:0000858
xref: FMA:9600
xref: GAID:392
xref: HOG:0001261
xref: MA:0000404
xref: MAT:0000078
xref: MIAA:0000078
xref: ncithesaurus:Prostate_Gland
xref: OpenCyc:Mx4rv6trqZwpEbGdrcN5Y29ycA
is_a: UBERON:0002530 ! gland
relationship: develops_from UBERON:0003280 ! endothelium of main bronchus
[Term]
id: UBERON:0002368
name: endocrine gland
alt_id: UBERON:FMA_9602-MA_0002563
def: "." [Wikipedia:Endocrine_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ductless gland" EXACT []
synonym: "ductless gland" EXACT []
synonym: "Endocrine gland" EXACT []
synonym: "Glandula endocrina" EXACT []
synonym: "glandula endocrina" EXACT []
xref: BTO:0001488
xref: FMA:9602
xref: GAID:335
xref: MA:0002563
xref: ncithesaurus:Endocrine_Gland
xref: OpenCyc:Mx4rvbkiRZwpEbGdrcN5Y29ycA
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0002369
name: adrenal gland
alt_id: UBERON:FMA_9604-MA_0000116-MIAA_0000071-XAO_0000164
def: "This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells[GO]." [Wikipedia:Adrenal_gland]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Adrenal gland" EXACT []
synonym: "adrenal medulla cell" RELATED []
synonym: "Suprarenal gland" EXACT []
synonym: "suprarenal gland" RELATED []
xref: BTO:0000047
xref: EFO:0000238
xref: FMA:9604
xref: GAID:446
xref: galen:AdrenalGland
xref: MA:0000116
xref: MAT:0000071
xref: MIAA:0000071
xref: ncithesaurus:Adrenal_Gland
xref: OpenCyc:Mx4rvXYiz5wpEbGdrcN5Y29ycA
xref: XAO:0000164
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0002370
name: thymus
alt_id: UBERON:FMA_9607-MA_0000142-MIAA_0000080-XAO_0000163-ZFA_0001078
def: "Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [NLM:thymus, Wikipedia:Thymus]
comment: check - a subtype of gland? not in GO. NCIT has thymus and thymus gland
subset: uberon_slim
synonym: "Thymus" EXACT []
synonym: "Thymus gland" EXACT []
synonym: "thymus gland" EXACT []
xref: BTO:0001374
xref: EFO:0000860
xref: EHDAA:9119
xref: FMA:9607
xref: GAID:464
xref: HOG:0000253
xref: MA:0000142
xref: MAT:0000080
xref: MIAA:0000080
xref: ncithesaurus:Thymus_Gland
xref: TAO:0001078
xref: XAO:0000163
xref: ZFA:0001078
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0002224 ! thoracic cavity
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0002405 ! immune system
[Term]
id: UBERON:0002371
name: bone marrow
alt_id: UBERON:FMA_9608-MA_0000134-MIAA_0000084-XAO_0000123-ZFA_0000669
def: "flexible tissue found in the hollow interior of bones. In adults, marrow in large bones produces new blood cells[WP]. The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis. Davidson and Zon 2004." [Wikipedia:Bone_marrow, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "anterior kidney" RELATED []
synonym: "Bone marrow" EXACT []
synonym: "head kidney" BROAD []
synonym: "kidney marrow" RELATED []
synonym: "Medulla ossea" EXACT []
synonym: "medulla ossea" EXACT []
xref: BTO:0000141
xref: EFO:0000868
xref: FMA:9608
xref: GAID:1287
xref: galen:BoneMarrow
xref: HOG:0001218
xref: MA:0000134
xref: MAT:0000084
xref: MIAA:0000084
xref: ncithesaurus:Bone_Marrow
xref: OpenCyc:Mx4rvVm-FpwpEbGdrcN5Y29ycA
xref: TAO:0000669
xref: XAO:0000123
xref: ZFA:0000669
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0001474 ! bone
relationship: part_of UBERON:0002390 ! hematopoietic system
[Term]
id: UBERON:0002372
name: tonsil
alt_id: UBERON:FMA_9609-MA_0000143
def: "Portion of lymphoid tissue on either side of the throat." [Wikipedia:Tonsil]
comment: Most commonly, the term "tonsils" refers to the palatine tonsils that can be seen in the back of the throat.
subset: uberon_slim
synonym: "Tonsil" EXACT []
xref: BTO:0001387
xref: EFO:0001401
xref: FMA:9609
xref: GAID:341
xref: HOG:0001139
xref: MA:0000143
xref: ncithesaurus:Tonsil
xref: OpenCyc:Mx4rvVivrZwpEbGdrcN5Y29ycA
is_a: UBERON:0001744 ! lymphoid tissue
relationship: part_of UBERON:0001735 ! tonsillar ring
[Term]
id: UBERON:0002373
name: palatine tonsil
alt_id: UBERON:FMA_9610-MA_0000775-MIAA_0000291
def: "tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]." [Wikipedia:Palatine_tonsil]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Faucial tonsil" EXACT []
synonym: "faucial tonsil" EXACT []
synonym: "Palatine tonsil" EXACT []
xref: EFO:0001977
xref: FMA:9610
xref: HOG:0001140
xref: MA:0000775
xref: MAT:0000291
xref: MIAA:0000291
xref: ncithesaurus:Palatine_Tonsil
is_a: UBERON:0001732 ! implied link automatically realized ! pharyngeal tonsil
is_a: UBERON:0002372 ! tonsil
[Term]
id: UBERON:0002374
name: metacarpal bone
alt_id: UBERON:FMA_9612-MA_0000302
def: "." [Wikipedia:Metacarpal_bone]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Metacarpal" EXACT []
synonym: "metacarpal" EXACT []
synonym: "Metacarpal bone" EXACT []
xref: FMA:9612
xref: MA:0000302
xref: ncithesaurus:Metacarpal_Bone
xref: OpenCyc:Mx4rv1Bk45wpEbGdrcN5Y29ycA
is_a: UBERON:0001442 ! skeleton of hand
is_a: UBERON:0003821 ! metacarpal/metatarsal bone
[Term]
id: UBERON:0002375
name: cricoid cartilage
alt_id: UBERON:FMA_9615-MA_0001762
def: "." [Wikipedia:Cricoid_cartilage]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cricoid cartilage" EXACT []
xref: AAO:0000675
xref: FMA:9615
xref: GAID:110
xref: HOG:0001308
xref: MA:0001762
xref: ncithesaurus:Cricoid_Cartilage
is_a: UBERON:0001739 ! laryngeal cartilage
[Term]
id: UBERON:0002376
name: muscle of head
alt_id: UBERON:FMA_9616-MA_0000578-ZFA_0000328
def: "Muscle organ which is a part of the head. Examples: masseter, orbicularis oculi." []
comment: TODO - check ZFA
subset: uberon_slim
synonym: "cephalic musculature" EXACT []
synonym: "Head muscle" EXACT []
synonym: "head muscle" EXACT []
synonym: "head muscles" RELATED []
synonym: "Muscle of head" EXACT []
synonym: "Musculus caput" EXACT []
synonym: "musculus caput" EXACT []
xref: BTO:0000021
xref: FMA:9616
xref: MA:0000578
xref: TAO:0000328
xref: WBbt:0006761
xref: ZFA:0000328
xref: ZFA:0001652
is_a: UBERON:0001630 ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0002377
name: muscle of neck
alt_id: UBERON:FMA_9617-MA_0000587
def: "Muscle organ which is a part of the neck. Examples: platysma, sternocleidomastoid, cricothyroid muscle." []
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Muscle of neck" EXACT []
synonym: "Neck muscle" EXACT []
synonym: "neck muscle" EXACT []
xref: FMA:9617
xref: GAID:149
xref: MA:0000587
xref: ncithesaurus:Neck_Muscle
is_a: UBERON:0001630 ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000974 ! neck
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0002378
name: muscle of abdomen
alt_id: UBERON:FMA_9620-MA_0000520
def: "Muscle (organ) which is a part of the abdomen. Examples: external oblique, rectus abdominis." [Wikipedia:Abdominal_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "abdomen muscle" EXACT []
synonym: "Abdominal muscle" EXACT []
synonym: "abdominal muscle" EXACT []
synonym: "Abdominal wall muscle" EXACT []
synonym: "abdominal wall muscle" EXACT []
synonym: "Muscle of abdomen" EXACT []
xref: BTO:0001261
xref: FMA:9620
xref: GAID:89
xref: MA:0000520
xref: ncithesaurus:Abdominal_Muscle
is_a: UBERON:0001774 ! muscle of trunk
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0002379
name: perineal muscle
alt_id: UBERON:FMA_9623-MA_0000538
comment: This class was created automatically from a combination of ontologies
synonym: "Muscle of perineum" EXACT []
synonym: "muscle of perineum" EXACT []
synonym: "Perineal muscle" EXACT []
xref: FMA:9623
xref: MA:0000538
xref: ncithesaurus:Perineal_Muscle
is_a: UBERON:0001325 ! muscle of pelvis
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002356 ! perineum
[Term]
id: UBERON:0002380
name: trapezius
alt_id: UBERON:FMA_9626-MA_0002398
def: "." [Wikipedia:Trapezius]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Trapezius" EXACT []
xref: FMA:9626
xref: HOG:0000834
xref: MA:0002398
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0002381
name: pectoralis major
alt_id: UBERON:FMA_9627-MA_0002354
def: "." [Wikipedia:Pectoralis_major]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pectoralis major" EXACT []
xref: EHDAA:8311
xref: FMA:9627
xref: HOG:0000895
xref: MA:0002354
xref: ncithesaurus:Pectoralis_Major
is_a: UBERON:0001495 ! pectoral muscle
[Term]
id: UBERON:0002382
name: rectus abdominis
alt_id: UBERON:FMA_9628-MA_0002364
def: "." [Wikipedia:Rectus_abdominis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Rectus abdominis" EXACT []
xref: EHDAA:8252
xref: FMA:9628
xref: GAID:142
xref: HOG:0000863
xref: MA:0002364
xref: ncithesaurus:Rectus_Abdominis
is_a: UBERON:0002378 ! muscle of abdomen
[Term]
id: UBERON:0002383
name: supraspinatus
alt_id: UBERON:FMA_9629-MA_0002389
def: "." [Wikipedia:Supraspinatus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Supraspinatus" EXACT []
xref: EHDAA:8319
xref: FMA:9629
xref: HOG:0000848
xref: MA:0002389
xref: ncithesaurus:Supraspinatus
is_a: UBERON:0001482 ! muscle of shoulder
[Term]
id: UBERON:0002384
name: connective tissue
alt_id: UBERON:FMA_9640-FMA_9721-MA_0000011-MA_0000115-MIAA_0000301-XAO_0000173-XAO_0001017
def: "Tissue which consists of fibroblasts, osteocytes or chondrocytes and intercellular matrix produced by these cells. Examples: bone (tissue), dense regular elastic tissue, areolar tissue, neuroglia, adipose tissue. // Anatomical entity consisting of tissue that is rich in extracellular matrix (collagen, proteoglycan, etc.) and binds together and is the support of the various structures of the body." [BTO:0000421, OMD:connective+tissue, Wikipedia:Connective_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Connective tissue" EXACT []
synonym: "fascia" RELATED []
synonym: "portion of connective tissue" EXACT []
synonym: "Textus connectivus" EXACT []
synonym: "textus connectivus" EXACT []
xref: AAO:0000098
xref: BTO:0000421
xref: EFO:0000952
xref: FMA:9640
xref: GAID:100
xref: galen:ConnectiveTissue
xref: MA:0000011
xref: MAT:0000301
xref: MIAA:0000301
xref: ncithesaurus:Connective_Tissue
xref: OpenCyc:Mx4rv-aBgZwpEbGdrcN5Y29ycA
xref: XAO:0001017
xref: ZFA:0001632
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0002385
name: muscle tissue
alt_id: UBERON:FMA_9641-MA_0002437
def: "Tissue which consists of muscle cells surrounded by a reticulum of collagen fibers or fine connective tissue [endomysium]. Examples: Smooth muscle, Cardiac muscle." [Wikipedia:Muscle_tissue]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Muscle tissue" EXACT []
synonym: "Textus muscularis" EXACT []
synonym: "textus muscularis" EXACT []
xref: AAO:0000306
xref: FMA:9641
xref: MA:0002437
xref: ncithesaurus:Muscle_Tissue
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0001015 ! muscle system
[Term]
id: UBERON:0002386
name: lower segment of arm
alt_id: UBERON:FMA_9663-MA_0000034
def: "." [Wikipedia:Forearm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Antebrachial region" EXACT []
synonym: "antebrachial region" EXACT []
synonym: "forearm" EXACT []
synonym: "Intermediate segment of free upper limb" EXACT []
synonym: "intermediate segment of free upper limb" EXACT []
synonym: "lower arm" EXACT []
synonym: "zeugopod of arm" EXACT []
xref: BTO:0001447
xref: EHDAA:4172
xref: EHDAA:6218
xref: FMA:9663
xref: GAID:55
xref: galen:Forearm
xref: MA:0000034
xref: ncithesaurus:Forearm
xref: OpenCyc:Mx4rvVjnmpwpEbGdrcN5Y29ycA
is_a: UBERON:0002471 ! zeugopod
intersection_of: UBERON:0002471 ! zeugopod
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0002387
name: foot
alt_id: UBERON:FMA_9664-MA_0000044
def: "." [Wikipedia:Foot]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Foot" EXACT []
synonym: "Terminal segment of free lower limb" EXACT []
synonym: "terminal segment of free lower limb" EXACT []
xref: BTO:0000476
xref: FMA:9664
xref: GAID:40
xref: galen:Foot
xref: MA:0000044
xref: ncithesaurus:Foot
xref: OpenCyc:Mx4rvVi-k5wpEbGdrcN5Y29ycA
is_a: UBERON:0002470 ! autopod
intersection_of: UBERON:0002470 ! autopod
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0002388
name: ankle
alt_id: UBERON:FMA_9665-MA_0000043
def: "." [Wikipedia:Ankle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Ankle" EXACT []
xref: EFO:0001409
xref: FMA:9665
xref: GAID:41
xref: galen:Ankle
xref: MA:0000043
xref: OpenCyc:Mx4rvVi-R5wpEbGdrcN5Y29ycA
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0002389
name: finger
alt_id: UBERON:FMA_9666-MA_0000041
def: "Subdivision of the hand demarcated from the hand proper by the skin crease in line with the distal edge of finger webs. Examples: thumb, right middle finger, left little finger [FMA]. A digit found on the hands of humans and other primates used for manipulation and sensation [Wikipedia]." [Wikipedia:Finger]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Digit of hand" EXACT []
synonym: "digit of hand" EXACT []
synonym: "Digitus manus" EXACT []
synonym: "digitus manus" EXACT []
synonym: "Finger" EXACT []
synonym: "hand digit" EXACT []
xref: FMA:9666
xref: GAID:57
xref: galen:Finger
xref: MA:0000041
xref: ncithesaurus:Finger
xref: OpenCyc:Mx4rvVi_f5wpEbGdrcN5Y29ycA
is_a: UBERON:0000028 ! fore digit
intersection_of: UBERON:0002544 ! digit
intersection_of: part_of UBERON:0002398 ! hand
relationship: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0002390
name: hematopoietic system
alt_id: UBERON:FMA_9667-MA_0002434-MIAA_0000022-XAO_0000122-ZFA_0005023
def: "Anatomical system that consists of the blood and blood forming tissues." [OMD:haematological, Wikipedia:Hematopoietic_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "haematological system" EXACT []
synonym: "haematopoietic system" RELATED []
synonym: "haemopoietic system" EXACT []
synonym: "hematological system" RELATED []
synonym: "hematolymphoid system" RELATED []
synonym: "Hematopoietic system" EXACT []
synonym: "Hemopoietic system" EXACT []
synonym: "hemopoietic system" RELATED []
synonym: "Organa haemopoietica" EXACT []
synonym: "organa haemopoietica" EXACT []
xref: BTO:0000570
xref: EFO:0000798
xref: FMA:9667
xref: GAID:1008
xref: HOG:0001624
xref: MA:0002434
xref: MAT:0000022
xref: MIAA:0000022
xref: ncithesaurus:Hematopoietic_System
xref: TAO:0005023
xref: XAO:0000122
xref: ZFA:0005023
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
relationship: part_of UBERON:0002193 ! hemolymphoid system
[Term]
id: UBERON:0002391
name: lymph
alt_id: UBERON:FMA_9671-MA_0002520-MIAA_0000055
def: "Transudate contained in the lumen of lymphatic vessel (FMA). Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system (wikipedia)." [Wikipedia:Lymph]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lymph" EXACT []
xref: BTO:0000855
xref: EFO:0000871
xref: ENVO:02000041
xref: FMA:9671
xref: GAID:1186
xref: MA:0002520
xref: MAT:0000055
xref: MIAA:0000055
xref: ncithesaurus:Lymph
is_a: UBERON:0000179 ! haemolymphatic fluid
relationship: develops_from UBERON:0000913 ! interstitial fluid
[Term]
id: UBERON:0002392
name: nasolacrimal duct
alt_id: UBERON:FMA_9703-MA_0001299
def: "." [Wikipedia:Nasolacrimal_duct]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Nasolacrimal duct" EXACT []
xref: EHDAA:7849
xref: EHDAA:9094
xref: FMA:9703
xref: GAID:902
xref: MA:0001299
xref: ncithesaurus:Nasolacrimal_Duct
xref: OpenCyc:Mx4rv6PJy5wpEbGdrcN5Y29ycA
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0001850 ! lacrimal duct
[Term]
id: UBERON:0002393
name: pharyngotympanic tube
alt_id: UBERON:FMA_9705-MA_0000255-XAO_0000213
def: "Organ with organ cavity which connects the cavity of the middle ear to the cavity of the pharynx. Examples: There are only two pharyngotympanic tubes, the right and the left pharyngotympanic tubes." [Wikipedia:Pharyngotympanic_tube]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Auditory tube" EXACT []
synonym: "auditory tube" EXACT []
synonym: "Eustachian tube" EXACT []
synonym: "eustachian tube" RELATED []
synonym: "Internal auditory tube" EXACT []
synonym: "internal auditory tube" EXACT []
synonym: "Pharyngotympanic tube" EXACT []
xref: FMA:9705
xref: GAID:869
xref: HOG:0001145
xref: MA:0000255
xref: ncithesaurus:Eustachian_Tube
xref: XAO:0000213
is_a: UBERON:0000020 ! implied link automatically realized ! sense organ
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001756 ! middle ear
[Term]
id: UBERON:0002394
name: bile duct
alt_id: UBERON:FMA_9706-MA_0000354-XAO_0000134
def: "Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Bile duct" EXACT []
synonym: "Biliary duct" EXACT []
synonym: "biliary duct" EXACT []
synonym: "hepatic duct" RELATED []
xref: BTO:0000122
xref: FMA:9706
xref: GAID:280
xref: HOG:0000212
xref: MA:0000354
xref: ncithesaurus:Bile_Duct
xref: OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA
xref: XAO:0000134
is_a: UBERON:0000058 ! duct
intersection_of: UBERON:0000058 ! duct
intersection_of: transports UBERON:0001970 ! bile
relationship: part_of UBERON:0000916 ! abdomen
relationship: part_of UBERON:0002294 ! biliary system
[Term]
id: UBERON:0002395
name: talus
alt_id: UBERON:FMA_9708-MA_0001351
def: "." [Wikipedia:Talus]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "astragalus" RELATED []
synonym: "Talus" EXACT []
xref: BTO:0002354
xref: FMA:9708
xref: GAID:196
xref: MA:0001351
xref: ncithesaurus:Talus
is_a: UBERON:0001447 ! tarsal bone
[Term]
id: UBERON:0002396
name: vomer
alt_id: UBERON:FMA_9710-MA_0001496
def: "." [Wikipedia:Vomer]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Vomer" EXACT []
synonym: "Vomer bone" EXACT []
synonym: "vomer bone" EXACT []
xref: AAO:0000633
xref: FMA:9710
xref: MA:0001496
xref: ncithesaurus:Vomer
xref: OpenCyc:Mx4rv6jKWZwpEbGdrcN5Y29ycA
xref: ZFA:0000308
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0002397
name: maxilla
alt_id: UBERON:FMA_9711-MA_0001491-ZFA_0000270
def: "The dermal maxilla forms part of the upper jaw. It is first visible as a small dorsoventrally oriented rod of bone in the lateral region of the upper jaw. Through anterior ossification it becomes S-shaped, with its anteriormost tip directed medially (4.8 mm NL). The posteroventral end of the maxilla is connected to the dentary by a ligament. Maxillary teeth are absent in cypriniforms, but are present in other ostariophysans. . Two barbels are present on the maxilla. The presence of two pairs of maxillary barbels is considered by Cavender and Coburn (1992) to be the primitive condition for the Cyprinidae." [Wikipedia:Maxilla, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Maxilla" EXACT []
synonym: "maxillae" RELATED []
synonym: "Upper jaw bone" EXACT []
synonym: "upper jaw bone" EXACT []
xref: AAO:0000285
xref: EHDAA:8043
xref: FMA:9711
xref: GAID:220
xref: HAO:0000513
xref: HOG:0001021
xref: MA:0001491
xref: ncithesaurus:Maxilla
xref: TAO:0000270
xref: ZFA:0000270
is_a: UBERON:0002514 ! intramembranous bone
is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001709 ! upper jaw
relationship: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0002398
name: hand
alt_id: UBERON:FMA_9712-MA_0000037
def: "." [Wikipedia:Hand]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Hand" EXACT []
synonym: "Terminal segment of free upper limb" EXACT []
synonym: "terminal segment of free upper limb" EXACT []
xref: FMA:9712
xref: GAID:56
xref: galen:Hand
xref: MA:0000037
xref: ncithesaurus:Hand
xref: OpenCyc:Mx4rvViGVZwpEbGdrcN5Y29ycA
is_a: UBERON:0002470 ! autopod
intersection_of: UBERON:0002470 ! autopod
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0002399
name: lesser omentum
alt_id: UBERON:FMA_9715-MA_0001623
def: "." [Wikipedia:Lesser_omentum]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lesser omentum" EXACT []
xref: EHDAA:4858
xref: FMA:9715
xref: HOG:0000357
xref: MA:0001623
xref: ncithesaurus:Lesser_Omentum
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001178 ! visceral peritoneum
[Term]
id: UBERON:0002400
name: parietal pleura
alt_id: UBERON:FMA_9733-MA_0002488
def: "Parietal serous membrane which is continuous with the visceral pleura and is attached to the dome of the diaphragm." [Wikipedia:Parietal_pleura]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Parietal pleura" EXACT []
xref: FMA:9733
xref: HOG:0001495
xref: MA:0002488
xref: ncithesaurus:Parietal_Pleura
is_a: UBERON:0000042 ! serous membrane
relationship: part_of UBERON:0000977 ! mesothoracic pleurum
[Term]
id: UBERON:0002401
name: visceral pleura
alt_id: UBERON:FMA_9734-MA_0002489
def: "Visceral serous membrane which is continuous with the parietal pleura and is attached to the parenchyma of lobe of lung." [Wikipedia:Visceral_pleura]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pleura visceralis (pulmonalis)" EXACT []
synonym: "pleura visceralis (pulmonalis)" EXACT []
synonym: "Pulmonary pleura" EXACT []
synonym: "pulmonary pleura" EXACT []
synonym: "Visceral pleura" EXACT []
xref: FMA:9734
xref: MA:0002489
xref: ncithesaurus:Visceral_Pleura
is_a: UBERON:0000042 ! serous membrane
relationship: part_of UBERON:0000977 ! mesothoracic pleurum
[Term]
id: UBERON:0002402
name: pleural cavity
alt_id: UBERON:FMA_9740-MA_0000055
def: "Cavity of serous sac surropunded by the pleura." [Wikipedia:Pleural_cavity]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pleural cavity" EXACT []
xref: FMA:9740
xref: GAID:95
xref: HOG:0000581
xref: MA:0000055
xref: ncithesaurus:Pleural_Cavity
is_a: UBERON:0002323 ! body cavity
[Term]
id: UBERON:0002403
name: internal intercostal muscle
alt_id: UBERON:FMA_9757-MA_0002326
def: "." [Wikipedia:Internal_intercostal_muscle]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "intercostal muscle internal layer" RELATED []
synonym: "intercostales internus" EXACT []
synonym: "Internal intercostal muscle" EXACT []
xref: FMA:9757
xref: HOG:0000905
xref: MA:0002326
xref: ncithesaurus:Internal_Intercostal_Muscle
is_a: UBERON:0001111 ! intercostal muscle
[Term]
id: UBERON:0002404
name: transversus thoracis
alt_id: UBERON:FMA_9760-MA_0002397
def: "." [Wikipedia:Transversus_thoracis]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Transversus thoracis" EXACT []
xref: FMA:9760
xref: MA:0002397
xref: ncithesaurus:Transversus_Thoracis
is_a: UBERON:0002426 ! chest muscle
[Term]
id: UBERON:0002405
name: immune system
alt_id: UBERON:FMA_9825-MA_0002711-XAO_0003152-ZFA_0001159
def: "Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies." [NLM:immune+system, Wikipedia:Immune_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Immune system" EXACT []
xref: BILA:0000104
xref: FMA:9825
xref: GAID:328
xref: HOG:0001247
xref: MA:0002711
xref: ncithesaurus:Immune_System
xref: OpenCyc:Mx4rvWNkm5wpEbGdrcN5Y29ycA
xref: TAO:0001159
xref: XAO:0003152
xref: ZFA:0001159
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002416 ! integumental system
disjoint_from: UBERON:0002423 ! hepatobiliary system
[Term]
id: UBERON:0002406
name: pericardial sac
alt_id: UBERON:FMA_9868-ZFA_0000054
def: "Serous sac, which has as parts the serous pericardium and the pericardial cavity . Examples: There is only one pericardial sac." [Wikipedia:Pericardial_sac]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pericardial sac" EXACT []
synonym: "pericardium" RELATED []
xref: FMA:9868
xref: TAO:0000054
xref: ZFA:0000054
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001009 ! circulatory system
relationship: part_of UBERON:0002407 ! pericardium
[Term]
id: UBERON:0002407
name: pericardium
alt_id: UBERON:FMA_9869-MA_0000099
def: "Organ cluster which has as its parts the fibrous pericardium and the pericardial sac." [Wikipedia:Pericardium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pericardium" EXACT []
xref: BTO:0000717
xref: EFO:0000820
xref: EHDAA:5376
xref: FMA:9869
xref: GAID:569
xref: HOG:0001280
xref: MA:0000099
xref: MAT:0000454
xref: ncithesaurus:Pericardium
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002408
name: parietal serous pericardium
alt_id: UBERON:FMA_9870-MA_0000483
def: "Parietal serous membrane which is continuous with the visceral serous pericardium and is attached to the central tendon of diaphragm." [Wikipedia:Parietal_pericardium]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lamina parietalis (pericardii serosum)" EXACT []
synonym: "lamina parietalis (pericardii serosum)" EXACT []
synonym: "Parietal layer of serous pericardium" EXACT []
synonym: "parietal layer of serous pericardium" EXACT []
synonym: "Parietal pericardium" EXACT []
synonym: "parietal pericardium" EXACT []
synonym: "Parietal serous pericardium" EXACT []
xref: EHDAA:3422
xref: EHDAA:5378
xref: FMA:9870
xref: HOG:0000537
xref: MA:0000483
is_a: UBERON:0000042 ! serous membrane
relationship: part_of UBERON:0002357 ! serous pericardium
[Term]
id: UBERON:0002409
name: pericardial fluid
alt_id: UBERON:FMA_9887-MA_0002530
def: "Transudate contained in the pericardial cavity." [Wikipedia:Pericardial_fluid]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Pericardial fluid" EXACT []
xref: BTO:0001016
xref: FMA:9887
xref: MA:0002530
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0002410
name: autonomic nervous system
alt_id: UBERON:FMA_9905-MA_0000219-ZFA_0001574
def: "The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands[GO]." [Wikipedia:Autonomic_nervous_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ANS" RELATED []
synonym: "Autonomic nervous system" EXACT []
synonym: "Visceral nervous system" EXACT []
synonym: "visceral nervous system" EXACT []
xref: AAO:0000033
xref: BTO:0002507
xref: EHDA:10095
xref: FMA:9905
xref: GAID:706
xref: HOG:0000396
xref: MA:0000219
xref: ncithesaurus:Autonomic_Nervous_System
xref: NIF_GrossAnatomy:birnlex_1123
xref: TAO:0001574
xref: ZFA:0001574
is_a: UBERON:0000073 ! regional part of nervous system
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002411
name: clitoris
alt_id: UBERON:FMA_9909-MA_0000382
def: "." [Wikipedia:Clitoris]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Clitoris" EXACT []
xref: BTO:0002020
xref: FMA:9909
xref: GAID:385
xref: galen:Clitoris
xref: HOG:0000700
xref: MA:0000382
xref: ncithesaurus:Clitoris
xref: OpenCyc:Mx4rvVjr6ZwpEbGdrcN5Y29ycA
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000997 ! vulva
[Term]
id: UBERON:0002412
name: vertebra
alt_id: UBERON:FMA_9914-MA_0000309-ZFA_0001189
def: "Irregular bone that articulates with other vertebrae, or with one other vertebra and the skull or the sacrum // All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988)." [Wikipedia:Vertebra, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Vertebra" EXACT []
xref: AAO:0000691
xref: EFO:0001371
xref: FMA:9914
xref: HOG:0001143
xref: MA:0000309
xref: ncithesaurus:Vertebra
xref: TAO:0001189
xref: ZFA:0001189
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003463 ! implied link automatically realized ! trunk bone
is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue
relationship: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0002413
name: cervical vertebra
alt_id: UBERON:FMA_9915-MA_0000311-XAO_0003076
def: "." [Wikipedia:Cervical_vertebra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Cervical vertebra" EXACT []
xref: FMA:9915
xref: GAID:235
xref: galen:CervicalVertebra
xref: MA:0000311
xref: ncithesaurus:Cervical_Vertebra
xref: XAO:0003076
is_a: UBERON:0002412 ! vertebra
is_a: UBERON:0003458 ! implied link automatically realized ! neck bone
is_a: UBERON:0003568 ! implied link automatically realized ! neck connective tissue
relationship: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0002414
name: lumbar vertebra
alt_id: UBERON:FMA_9921-MA_0000312
def: "Large vertebra of the movable part of the vertebral column, characterized by the absence of the foramen transversarium within the transverse process, and by the absence of facets on the sides of the body." [Wikipedia:Lumbar_vertebra]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Lumbar vertebra" EXACT []
xref: FMA:9921
xref: GAID:240
xref: MA:0000312
xref: ncithesaurus:Lumbar_Vertebra
xref: OpenCyc:Mx4rvaOek5wpEbGdrcN5Y29ycA
is_a: UBERON:0002412 ! vertebra
[Term]
id: UBERON:0002415
name: tail
alt_id: UBERON:MA_0000008-MIAA_0000094-WBbt_0005741-XAO_0003026-ZFA_0001117
def: "posterior region, from rectum to the end // Organism subdivision that is the terminal, flexible posterior appendage of the larva. It is resorbed during metamorphosis beginning with degeneration of the notochord's distal tip at NF stage 61, followed by degeneration gradually extending to its more proximal regions and reaching its proximal end by NF stage 62. By NF stage 66 it exists only as a small dorsal swelling. // Organism subdivision which is the part of the body posterior to the vent which includes the anal and caudal fins." [ISBN:0471209627, OMD:tail, WB:rynl, Wikipedia:Tail, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "post-vent region" EXACT []
xref: BILA:0000117
xref: BTO:0001348
xref: EFO:0000963
xref: EHDAA:9198
xref: GAID:1245
xref: MA:0000008
xref: MAT:0000094
xref: MIAA:0000094
xref: OpenCyc:Mx4rvVjiC5wpEbGdrcN5Y29ycA
xref: TAO:0001117
xref: WBbt:0005741
xref: XAO:0003026
xref: ZFA:0001117
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0002416
name: integumental system
alt_id: UBERON:MA_0000014-FMA_72979
def: "organ system that protects the body from damage, comprising the skin and its appendages (including hair, scales, and nails). The integumentary system has a variety of functions; it may serve to waterproof, cushion and protect the deeper tissues, excrete wastes, regulate temperature and is the location of receptors for pain, sensation, pressure and temperature. In humans the integumentary system additionally provides vitamin D synthesis[WP]." [Wikipedia:Integumentary_system]
synonym: "Integumental system" EXACT [FMA:72979]
xref: EFO:0000807
xref: EHDAA:6520
xref: FMA:72979
xref: HOG:0000403
xref: MA:0000014
xref: MAT:0000033
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002423 ! hepatobiliary system
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0002417
name: abdominal segment of trunk
alt_id: UBERON:MA_0000021-FMA_259211
synonym: "abdomen/pelvis/perineum" RELATED [MA:0000021]
synonym: "lower body" RELATED [MA:0000021]
xref: FMA:259211
xref: MA:0000021
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0002418
name: cartilage
alt_id: UBERON:MA_0000104-MIAA_0000189-XAO_0000170
def: "a portion of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate[GO]. Regular connective tissue, which consists of chondrocytes and related cells, the intercellular matrix of which is chondrified. Examples: hyaline cartilage, fibrocartilage, elastic cartilage[FMA]." [FMA:37377, GO:0051216, Wikipedia:Cartilage]
comment: see also FMA:71500 Set of cartilages, FMA:55107 Cartilage organ, FMA:12264 Articular cartilage
subset: uberon_slim
xref: AAO:0000060
xref: BTO:0000206
xref: EFO:0000949
xref: FMA:37377
xref: GAID:99
xref: galen:Cartilage
xref: HOG:0001207
xref: MA:0000104
xref: MAT:0000189
xref: MIAA:0000189
xref: ncithesaurus:Cartilage
xref: OpenCyc:Mx4rvVjeOZwpEbGdrcN5Y29ycA
xref: TAO:0001501
xref: XAO:0000170
xref: ZFA:0001501
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0002204 ! musculoskeletal system
[Term]
id: UBERON:0002419
name: skin gland
alt_id: UBERON:MA_0000146-FMA_71878
synonym: "Skin glands" EXACT [FMA:71878]
synonym: "skin glands" EXACT []
synonym: "Skin glands set" EXACT [FMA:71878]
synonym: "skin glands set" EXACT []
xref: FMA:71878
xref: MA:0000146
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0002530 ! gland
is_a: UBERON:0003297 ! implied link automatically realized ! gland of integumental system
relationship: part_of UBERON:0002097 ! skin
[Term]
id: UBERON:0002420
name: basal ganglia
def: "group of nuclei in the brains of vertebrates, situated at the base of the forebrain and strongly connected with the cerebral cortex, thalamus and other areas.ganglion in the head. The main components of the basal ganglia are the striatum, pallidum, substantia nigra, and subthalamic nucleus[WP]. Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF]." [Wikipedia:Basal_ganglia]
comment: FMA also has singular - FMA:62514
subset: uberon_slim
synonym: "basal ganglion" RELATED []
synonym: "basal nucleus" RELATED []
synonym: "basasl nucleus" BROAD []
xref: EFO:0000904
xref: FMA:84013
xref: GAID:617
xref: MA:0000184
xref: ncithesaurus:Basal_Ganglia
xref: NIF_GrossAnatomy:birnlex_826
is_a: UBERON:0000045 ! ganglion
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003339 ! implied link automatically realized ! ganglion of central nervous system
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0002421
name: hippocampal formation
alt_id: UBERON:MA_0000189-FMA_74038
def: "." [Wikipedia:Hippocampal_formation]
subset: uberon_slim
synonym: "archipallium" RELATED [MA:0000189]
synonym: "Hippocampus (Crosby)" EXACT [FMA:74038]
synonym: "hippocampus (crosby)" EXACT []
synonym: "primal cortex" RELATED [MA:0000189]
xref: FMA:74038
xref: MA:0000189
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0002422
name: fourth ventricle
alt_id: UBERON:MA_0000196-FMA_78469
def: "The fourth ventricle is an irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space[GO]." [Wikipedia:Fourth_ventricle]
subset: uberon_slim
synonym: "4th ventricle" RELATED [MA:0000196]
xref: BTO:0003426
xref: FMA:78469
xref: HOG:0000006
xref: MA:0000196
xref: ncithesaurus:Fourth_Ventricle_of_the_Brain
xref: OpenCyc:Mx4rv-7Q6pwpEbGdrcN5Y29ycA
xref: ZFA:0000110
is_a: UBERON:0002300 ! ventricle
relationship: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0002423
name: hepatobiliary system
alt_id: UBERON:MA_0000324-MIAA_0000024-XAO_0000132-ZFA_0000036
def: "." [Wikipedia:Hepatobiliary_system]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "liver and biliary system" EXACT []
synonym: "liver/biliary system" RELATED []
xref: EFO:0000800
xref: EHDAA:2189
xref: HOG:0000294
xref: MA:0000324
xref: MAT:0000024
xref: MIAA:0000024
xref: ncithesaurus:Hepatobiliary_System
xref: TAO:0000036
xref: XAO:0000132
xref: ZFA:0000036
is_a: UBERON:0000467 ! anatomical system
disjoint_from: UBERON:0000075 ! subdivision of skeleton
disjoint_from: UBERON:0000949 ! endocrine system
disjoint_from: UBERON:0000990 ! reproductive system
disjoint_from: UBERON:0001004 ! respiratory system
disjoint_from: UBERON:0001007 ! digestive system
disjoint_from: UBERON:0001008 ! urinary system
disjoint_from: UBERON:0001009 ! circulatory system
disjoint_from: UBERON:0001016 ! nervous system
disjoint_from: UBERON:0001032 ! sense organ system
disjoint_from: UBERON:0001033 ! gustatory system
disjoint_from: UBERON:0001434 ! skeleton
disjoint_from: UBERON:0002204 ! musculoskeletal system
disjoint_from: UBERON:0002294 ! biliary system
disjoint_from: UBERON:0002330 ! exocrine system
disjoint_from: UBERON:0002390 ! hematopoietic system
disjoint_from: UBERON:0002405 ! immune system
disjoint_from: UBERON:0002416 ! integumental system
relationship: part_of UBERON:0001007 ! digestive system
[Term]
id: UBERON:0002424
name: oral epithelium
alt_id: UBERON:MA_0000344-ZFA_0000816
xref: BTO:0001775
xref: EHDAA:2187
xref: HOG:0000187
xref: MA:0000344
xref: ZFA:0000816
is_a: UBERON:0000483 ! epithelium
relationship: part_of UBERON:0000166 ! oral opening
[Term]
id: UBERON:0002425
name: visceral serous pericardium
alt_id: UBERON:MA_0000484-FMA_84882
def: "." [Wikipedia:Visceral_pericardium]
subset: uberon_slim
synonym: "epicardium" RELATED [MA:0000484]
synonym: "Visceral lamina of serous pericardium" EXACT [FMA:84882]
synonym: "visceral lamina of serous pericardium" EXACT []
synonym: "Visceral layer of serous pericardium" EXACT [FMA:84882]
synonym: "visceral layer of serous pericardium" EXACT []
synonym: "Visceral pericardium" EXACT [FMA:84882]
synonym: "visceral pericardium" EXACT []
xref: FMA:84882
xref: HOG:0000538
xref: MA:0000484
is_a: UBERON:0002357 ! serous pericardium
relationship: attached_to UBERON:0002349 ! myocardium
[Term]
id: UBERON:0002426
name: chest muscle
alt_id: UBERON:MA_0000548-FMA_9619
synonym: "Chest muscle" EXACT [FMA:9619]
synonym: "Musculus thoracicus" EXACT [FMA:9619]
synonym: "musculus thoracicus" EXACT []
synonym: "Thoracic muscle" EXACT [FMA:9619]
synonym: "thoracic muscle" EXACT []
xref: FMA:9619
xref: MA:0000548
is_a: UBERON:0001774 ! muscle of trunk
is_a: UBERON:0003830 ! implied link automatically realized ! thoracic segment muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001443 ! chest
relationship: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0002427
name: arm skin
alt_id: UBERON:MA_0000596-FMA_37721
synonym: "Arm skin" EXACT [FMA:37721]
xref: FMA:37721
xref: MA:0000596
xref: ncithesaurus:Arm_Skin
is_a: UBERON:0001419 ! skin of limb
is_a: UBERON:0002097 ! skin
is_a: UBERON:0003531 ! implied link automatically realized ! forelimb skin
intersection_of: UBERON:0002097 ! skin
intersection_of: part_of UBERON:0001460 ! arm
relationship: constitutional_part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0002428
name: limb bone
alt_id: UBERON:MA_0000688-MIAA_0000151
comment: This class was created automatically from a combination of ontologies
synonym: "limb skeleton" RELATED []
xref: EFO:0000880
xref: MA:0000688
xref: MAT:0000151
xref: MIAA:0000151
is_a: UBERON:0001474 ! bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002091 ! appendicular skeleton
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0002429
name: cervical lymph node
alt_id: UBERON:MA_0000736-FMA_61213
def: "." [Wikipedia:Cervical_lymph_node]
subset: uberon_slim
synonym: "Cervical lymph node" EXACT [FMA:61213]
xref: FMA:61213
xref: MA:0000736
xref: ncithesaurus:Cervical_Lymph_Node
is_a: UBERON:0000029 ! lymph node
intersection_of: UBERON:0000029 ! lymph node
intersection_of: part_of UBERON:0000002 ! cervix
[Term]
id: UBERON:0002430
name: lateral hypothalamic area
alt_id: UBERON:MA_0000834-FMA_62030
def: "." [Wikipedia:Lateral_hypothalamic_area]
subset: uberon_slim
synonym: "Lateral division of hypothalamus" EXACT [FMA:62030]
synonym: "lateral division of hypothalamus" EXACT []
synonym: "Lateral group of hypothalamic nuclei" EXACT [FMA:62030]
synonym: "lateral group of hypothalamic nuclei" EXACT []
synonym: "Lateral hypothalamic area" EXACT [FMA:62030]
synonym: "Lateral hypothalamic group" EXACT [FMA:62030]
synonym: "lateral hypothalamic group" EXACT []
synonym: "lateral hypothalamic nucleus" RELATED [MA:0000834]
synonym: "Lateral hypothalamic zone (Crosby)" EXACT [FMA:62030]
synonym: "lateral hypothalamic zone (crosby)" EXACT []
xref: FMA:62030
xref: MA:0000834
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus
[Term]
id: UBERON:0002431
name: pars anterior
alt_id: UBERON:MA_0000854-ZFA_0001195
synonym: "anterior lobe" RELATED [MA:0000854]
synonym: "pars distalis" RELATED [MA:0000854, ZFA:0001195]
synonym: "pars glandularis" RELATED [MA:0000854]
xref: EHDAA:7532
xref: HOG:0000244
xref: MA:0000854
xref: ZFA:0001195
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0002196 ! adenohypophysis
[Term]
id: UBERON:0002432
name: pars intermedia
alt_id: UBERON:MA_0000855-ZFA_0001197
def: "boundary between the anterior and posterior lobes of the pituitary. It contains three types of cells: basophils, chromophobes, and colloid-filled cysts. The cysts are the remainder of Rathke's pouch. In human fetal life, this area produces melanocyte stimulating hormone or MSH which causes the release of melanin pigment in skin melanocytes (pigment cells). However, the pars intermedia is normally either very small or entirely absent in adulthood. In lower vertebrates (fish, amphibians) MSH from the pars intermedia is responsible for darkening of the skin, often in response to changes in background color. This color change is due to MSH stimulating the dispersion of melanin pigment in dermal (skin) melanophore cells." [Wikipedia:Pars_intermedia]
subset: uberon_slim
xref: BTO:0001788
xref: EHDAA:8765
xref: HOG:0001178
xref: MA:0000855
xref: ZFA:0001197
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0002196 ! adenohypophysis
[Term]
id: UBERON:0002433
name: pars tuberalis
alt_id: UBERON:MA_0000856-ZFA_0001196
def: "." [Wikipedia:Pars_tuberalis]
subset: uberon_slim
xref: BTO:0001739
xref: EHDAA:8767
xref: HOG:0001114
xref: MA:0000856
xref: ZFA:0001196
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0002196 ! adenohypophysis
[Term]
id: UBERON:0002434
name: pituitary stalk
alt_id: UBERON:MA_0000858-ZFA_0001199
def: "a funnel-shape cavity or organ." [Wikipedia:Infundibulum]
subset: uberon_slim
synonym: "hypophysial stalk" RELATED [ZFA:0001199]
synonym: "infundibulum" RELATED [ZFA:0001199]
synonym: "infundibulum of hypothalamus" RELATED [ZFA:0001199]
xref: BTO:0000768
xref: EHDAA:7538
xref: HOG:0000245
xref: MA:0000858
xref: ncithesaurus:Pituitary_Stalk
xref: ZFA:0001199
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0002435
name: striatum
alt_id: UBERON:MA_0000891-FMA_77618
def: "The striatum is a large cluster of dopaminergic nerve cells, consisting of the caudate nucleus and the putamen, that controls movement, balance, and walking[GO]." [Wikipedia:Striatum]
subset: uberon_slim
synonym: "corpus striatum" RELATED [MA:0000891]
xref: EFO:0000109
xref: FMA:77618
xref: MA:0000891
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0002420 ! basal ganglia
[Term]
id: UBERON:0002436
name: primary visual cortex
alt_id: UBERON:MA_0000914-FMA_236871
def: "." [Wikipedia:Primary_visual_cortex]
subset: uberon_slim
synonym: "area striata" RELATED []
synonym: "BA17" RELATED [Wikipedia:Visual_cortex]
synonym: "Brodmann area 17" RELATED [Wikipedia:Visual_cortex]
synonym: "Primary visual cortex" EXACT [FMA:236871]
synonym: "striate cortex" EXACT [FMA:236871]
synonym: "v1" RELATED []
xref: FMA:236871
xref: MA:0000914
xref: NIF_GrossAnatomy:birnlex_1748
is_a: UBERON:0003208
relationship: part_of UBERON:0002021 ! occipital lobe
[Term]
id: UBERON:0002437
name: cerebral white matter
alt_id: UBERON:MA_0000945-FMA_241998
xref: BTO:0000236
xref: FMA:241998
xref: MA:0000945
xref: ncithesaurus:Cerebral_White_Matter
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
relationship: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0002438
name: ventral tegmental nucleus
alt_id: UBERON:MA_0001031-FMA_72435
synonym: "Anterior tegmental nuclei" EXACT [FMA:72435]
synonym: "anterior tegmental nuclei" EXACT []
synonym: "Anterior tegmental nucleus" EXACT [FMA:72435]
synonym: "anterior tegmental nucleus" EXACT []
synonym: "Deep tegmental nucleus of Gudden" EXACT [FMA:72435]
synonym: "deep tegmental nucleus of gudden" EXACT []
synonym: "nucleus of gudden" RELATED [MA:0001031]
synonym: "Ventral raphe tegmental nucleus" EXACT [FMA:72435]
synonym: "ventral raphe tegmental nucleus" EXACT []
synonym: "Ventral tegmental nuclei" EXACT [FMA:72435]
synonym: "ventral tegmental nuclei" EXACT []
synonym: "Ventral tegmental nucleus (Gudden)" EXACT [FMA:72435]
synonym: "ventral tegmental nucleus (gudden)" EXACT []
synonym: "Ventral tegmental nucleus of Gudden" EXACT [FMA:72435]
synonym: "ventral tegmental nucleus of gudden" EXACT []
xref: FMA:72435
xref: MA:0001031
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0000988 ! pons
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002439
name: myenteric nerve plexus
alt_id: UBERON:MA_0001148-FMA_63252
def: "." [Wikipedia:Auerbach's_plexus]
subset: uberon_slim
synonym: "Auerbach's plexus" EXACT [FMA:63252]
synonym: "auerbach's plexus" RELATED [MA:0001148]
synonym: "Meissner's plexus" EXACT [FMA:63252]
synonym: "meissner's plexus" EXACT []
synonym: "Myenteric plexus" EXACT [FMA:63252]
synonym: "myenteric plexus" EXACT []
synonym: "Remak's plexus" EXACT [FMA:63252]
synonym: "remak's plexus" EXACT []
synonym: "Submucous nerve plexus" EXACT [FMA:63252]
synonym: "submucous nerve plexus" EXACT []
synonym: "Submucous plexus" EXACT [FMA:63252]
synonym: "submucous plexus" EXACT []
xref: BTO:0002436
xref: FMA:63252
xref: MA:0001148
xref: ncithesaurus:Submucous_Nerve_Plexus
is_a: UBERON:0001816 ! autonomic nerve plexus
[Term]
id: UBERON:0002440
name: inferior cervical ganglion
alt_id: UBERON:MA_0001154-FMA_6961
def: "." [Wikipedia:Inferior_cervical_ganglion]
subset: uberon_slim
synonym: "stellate ganglion" RELATED [MA:0001154]
synonym: "Variant cervical ganglion" EXACT [FMA:6961]
synonym: "variant cervical ganglion" EXACT []
xref: BTO:0000240
xref: EHDAA:8939
xref: FMA:6961
xref: MA:0001154
is_a: UBERON:0001991 ! cervical ganglion
[Term]
id: UBERON:0002441
name: cervicothoracic ganglion
alt_id: UBERON:MA_0001157-FMA_6469
def: "." [Wikipedia:Cervicothoracic_ganglion]
subset: uberon_slim
synonym: "Cervicothoracic sympathetic ganglion" EXACT [FMA:6469]
synonym: "cervicothoracic sympathetic ganglion" EXACT []
synonym: "Stellate ganglion" EXACT [FMA:6469]
synonym: "stellate ganglion" EXACT []
xref: BTO:0001815
xref: FMA:6469
xref: MA:0001157
is_a: UBERON:0001991 ! cervical ganglion
relationship: part_of UBERON:0001991 ! cervical ganglion
[Term]
id: UBERON:0002442
name: axillary nerve trunk
alt_id: UBERON:MA_0001175-FMA_65265
synonym: "Axillary nerve trunk" EXACT [FMA:65265]
synonym: "circumflex nerve trunk" RELATED [MA:0001175]
synonym: "Right axillary neural trunk" EXACT [FMA:65265]
synonym: "right axillary neural trunk" EXACT []
xref: FMA:65265
xref: MA:0001175
is_a: UBERON:0001147 ! trunk of peripheral nerve
[Term]
id: UBERON:0002443
name: choroidal blood vessel
alt_id: UBERON:MA_0001237-FMA_76550
synonym: "Choroid blood vessels" EXACT [FMA:76550]
synonym: "choroid blood vessels" EXACT []
synonym: "Choroid blood vessels set" EXACT [FMA:76550]
synonym: "choroid blood vessels set" EXACT []
xref: FMA:76550
xref: MA:0001237
is_a: UBERON:0001981 ! blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001776 ! choroid
relationship: part_of UBERON:0001776 ! choroid
[Term]
id: UBERON:0002444
name: lens fiber
alt_id: UBERON:MA_0001304-FMA_76827
def: "The lens fibers form the bulk of the lens. They are long, thin, transparent cells, with diameters typically between 4-7 micrometres and lengths of up to 12 mm long." [Wikipedia:Lens_(anatomy)#Lens_fibers]
synonym: "Lens fibers" EXACT [FMA:76827]
synonym: "lens fibers" EXACT []
synonym: "Lens fibers set" EXACT [FMA:76827]
synonym: "lens fibers set" EXACT []
synonym: "Lens fibres" EXACT [FMA:76827]
synonym: "lens fibres" EXACT []
xref: BTO:0000724
xref: EHDAA:4745
xref: EHDAA:9065
xref: FMA:76827
xref: HOG:0000444
xref: MA:0001304
xref: ncithesaurus:Lens_Fiber
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000965 ! lens
[Term]
id: UBERON:0002445
name: triquetral
alt_id: UBERON:MA_0001347-FMA_23715
def: "." [Wikipedia:Triquetral]
subset: uberon_slim
synonym: "Cuneiform bone of hand" EXACT [FMA:23715]
synonym: "cuneiform bone of hand" EXACT []
synonym: "cuneiform of hand" RELATED [MA:0001347]
synonym: "triangular" RELATED [MA:0001347]
synonym: "Triangular bone" EXACT [FMA:23715]
synonym: "triangular bone" EXACT []
synonym: "Triquetral bone" EXACT [FMA:23715]
synonym: "triquetral bone" EXACT []
synonym: "Triquetrum" EXACT [FMA:23715]
synonym: "triquetrum" RELATED [MA:0001347]
synonym: "ulnar carpal bone" RELATED [MA:0001347]
xref: FMA:23715
xref: MA:0001347
xref: ncithesaurus:Triangular_Bone
is_a: UBERON:0001480 ! proximal carpal bone
relationship: constitutional_part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0002446
name: patella
alt_id: UBERON:MA_0001374-FMA_24485
def: "." [Wikipedia:Patella]
comment: TODO: CHECK THIS ONE
subset: uberon_slim
synonym: "Knee bone" EXACT [FMA:24485]
synonym: "knee bone" EXACT []
xref: FMA:24485
xref: MA:0000666
xref: MA:0001374
xref: ncithesaurus:Patella
is_a: UBERON:0001479 ! sesamoid bone
is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone
intersection_of: UBERON:0001474 ! bone
intersection_of: adjacent_to UBERON:0000981 ! femur
intersection_of: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0002447
name: palatine gland
alt_id: UBERON:MA_0001584-FMA_71616
def: "." [Wikipedia:Palatine_gland]
subset: uberon_slim
synonym: "Palatine glands" EXACT [FMA:71616]
synonym: "palatine glands" EXACT []
synonym: "Palatine glands set" EXACT [FMA:71616]
synonym: "palatine glands set" EXACT []
xref: FMA:71616
xref: MA:0001584
is_a: UBERON:0001830 ! minor salivary gland
[Term]
id: UBERON:0002448
name: fungiform papilla
alt_id: UBERON:MA_0001595-FMA_71448
def: "." [Wikipedia:Fungiform_papilla]
subset: uberon_slim
synonym: "Fungiform papillae" EXACT [FMA:71448]
synonym: "fungiform papillae" EXACT []
synonym: "Fungiform papillae set" EXACT [FMA:71448]
synonym: "fungiform papillae set" EXACT []
xref: FMA:71448
xref: MA:0001595
xref: ncithesaurus:Fungiform_Papilla
is_a: UBERON:0001726 ! papilla of tongue
[Term]
id: UBERON:0002449
name: renal pyramid
alt_id: UBERON:MA_0001654-FMA_258870
def: "." [Wikipedia:Renal_pyramid]
subset: uberon_slim
xref: BTO:0003926
xref: FMA:258870
xref: MA:0001654
xref: ncithesaurus:Renal_Pyramid
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0002450
name: decidua
alt_id: UBERON:MA_0001722-MIAA_0000290
def: "Uterine lining (endometrium) during a pregnancy, which forms the maternal part of the placenta. It is formed under the influence of progesterone and forms highly-characteristic cells." [Wikipedia:Decidua]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "decidua basalis" RELATED []
synonym: "endometrium" RELATED []
xref: BTO:0001360
xref: FMA:85538
xref: GAID:378
xref: MA:0001722
xref: MAT:0000290
xref: MIAA:0000290
xref: ncithesaurus:Decidua
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001987 ! placenta
[Term]
id: UBERON:0002451
name: uterine gland
alt_id: UBERON:MA_0001726-FMA_71647
def: "tube like gland lined by ciliated columnar epithelium. lined by ciliated columnar epithelium." [Wikipedia:Uterine_glands]
subset: uberon_slim
synonym: "Uterine glands" EXACT [FMA:71647]
synonym: "uterine glands" EXACT []
synonym: "Uterine glands set" EXACT [FMA:71647]
synonym: "uterine glands set" EXACT []
xref: FMA:71647
xref: MA:0001726
xref: ncithesaurus:Uterine_Gland
is_a: UBERON:0002530 ! gland
relationship: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0002453
name: ethmoid sinus
alt_id: UBERON:MA_0001792-FMA_84115
def: "." [Wikipedia:Ethmoid_sinus]
subset: uberon_slim
xref: FMA:84115
xref: MA:0001792
xref: ncithesaurus:Ethmoid_Sinus
is_a: UBERON:0001825 ! paranasal sinus
[Term]
id: UBERON:0002454
name: dorsal metacarpal artery
alt_id: UBERON:MA_0001944-FMA_70800
def: "." [Wikipedia:Dorsal_metacarpal_artery]
subset: uberon_slim
synonym: "Dorsal metacarpal arteries" EXACT [FMA:70800]
synonym: "dorsal metacarpal arteries" EXACT []
synonym: "Dorsal metacarpal arteries set" EXACT [FMA:70800]
synonym: "dorsal metacarpal arteries set" EXACT []
xref: FMA:70800
xref: MA:0001944
xref: ncithesaurus:Dorsal_Metacarpal_Artery
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002455
name: common plantar digital arteries
alt_id: UBERON:MA_0001966-FMA_70821
def: "." [Wikipedia:Common_plantar_digital_arteries]
subset: uberon_slim
synonym: "Common plantar digital arteries" EXACT [FMA:70821]
synonym: "Common plantar digital arteries set" EXACT [FMA:70821]
synonym: "common plantar digital arteries set" EXACT []
xref: FMA:70821
xref: MA:0001966
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002456
name: internal thoracic artery
alt_id: UBERON:MA_0001984-FMA_3960
def: "." [Wikipedia:Internal_thoracic_artery]
subset: uberon_slim
synonym: "Internal mammary artery" EXACT [FMA:3960]
synonym: "internal mammary artery" EXACT []
synonym: "Internal thoracic mammary artery" EXACT [FMA:3960]
synonym: "internal thoracic mammary artery" EXACT []
xref: EHDAA:8585
xref: FMA:3960
xref: MA:0001984
xref: ncithesaurus:Internal_Mammary_Artery
xref: OpenCyc:Mx4rMe0MIao8EduQrwACs5b6Bw
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel
relationship: branch_of UBERON:0001533 ! subclavian artery
relationship: part_of UBERON:0001533 ! subclavian artery
[Term]
id: UBERON:0002457
name: intersegmental artery
alt_id: UBERON:MA_0001985-ZFA_0001061
xref: EHDAA:4340
xref: HOG:0000225
xref: MA:0001985
xref: ZFA:0001061
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002458
name: spinal artery
alt_id: UBERON:MA_0002043-ZFA_0000682
def: "." [Wikipedia:Spinal_artery]
subset: uberon_slim
synonym: "spinal arteries" RELATED [ZFA:0000682]
xref: EHDAA:4355
xref: MA:0002043
xref: ncithesaurus:Spinal_Artery
xref: ZFA:0000682
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0002459
name: inferior palpebral vein
alt_id: UBERON:MA_0002147-FMA_70847
synonym: "Inferior palpebral veins" EXACT [FMA:70847]
synonym: "inferior palpebral veins" EXACT []
synonym: "Inferior palpebral veins set" EXACT [FMA:70847]
synonym: "inferior palpebral veins set" EXACT []
synonym: "lower palpebral vein" RELATED [MA:0002147]
xref: FMA:70847
xref: MA:0002147
xref: ncithesaurus:Inferior_Palpebral_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002460
name: vesical vein
alt_id: UBERON:MA_0002263-FMA_70911
def: "." [Wikipedia:Vesical_vein]
subset: uberon_slim
synonym: "Vesical veins" EXACT [FMA:70911]
synonym: "vesical veins" EXACT []
synonym: "Vesical veins set" EXACT [FMA:70911]
synonym: "vesical veins set" EXACT []
xref: FMA:70911
xref: MA:0002263
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0002461
name: anterior abdominal wall muscle
alt_id: UBERON:MA_0002268-FMA_20278
synonym: "Anterior abdominal wall muscle" EXACT [FMA:20278]
xref: FMA:20278
xref: MA:0002268
xref: ncithesaurus:Anterior_Abdominal_Wall_Muscle
is_a: UBERON:0002378 ! muscle of abdomen
[Term]
id: UBERON:0002462
name: erector spinae
alt_id: UBERON:MA_0002289-FMA_71302
def: "." [Wikipedia:Erector_spinae]
subset: uberon_slim
synonym: "Erector spinae" EXACT [FMA:71302]
xref: FMA:71302
xref: HOG:0000984
xref: MA:0002289
xref: ncithesaurus:Erector_Spinae
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0002463
name: hamstring muscle
alt_id: UBERON:MA_0002312-FMA_81022
def: "." [Wikipedia:Hamstring_muscles]
subset: uberon_slim
synonym: "Hamstring muscles" EXACT [FMA:81022]
synonym: "hamstring muscles" EXACT []
synonym: "Hamstring muscles set" EXACT [FMA:81022]
synonym: "hamstring muscles set" EXACT []
synonym: "Hamstrings" EXACT [FMA:81022]
synonym: "hamstrings" EXACT []
xref: BTO:0003179
xref: EHDAA:8295
xref: FMA:81022
xref: HOG:0000844
xref: MA:0002312
xref: ncithesaurus:Hamstring
xref: OpenCyc:Mx4rvVjdtJwpEbGdrcN5Y29ycA
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0002464
name: nerve trunk
alt_id: UBERON:MA_0002408-FMA_5913
synonym: "Trunk of nerve" EXACT [FMA:5913]
synonym: "trunk of nerve" EXACT []
xref: BTO:0000927
xref: EHDAA:4675
xref: FMA:5913
xref: MA:0002408
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002465
name: lymphoid system
alt_id: UBERON:MA_0002435-FMA_74594
def: "The lymphatic system in vertebrates is a network of conduits that carry a clear fluid called lymph. It also includes the lymphoid tissue through which the lymph travels. Lymphoid tissue is found in many organs, particularly the lymph nodes, and in the lymphoid follicles associated with the digestive system such as the tonsils. The system also includes all the structures dedicated to the circulation and production of lymphocytes, which includes the spleen, thymus, bone marrow and the lymphoid tissue associated with the digestive system (Wikipedia)." [Wikipedia:Lymphoid_system]
subset: uberon_slim
synonym: "lymphatic system" EXACT [MA:0002435]
xref: EFO:0000870
xref: FMA:74594
xref: HOG:0000842
xref: MA:0002435
xref: ncithesaurus:Lymphatic_System
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0002405 ! immune system
relationship: systemic_part_of UBERON:0002193 ! hemolymphoid system
[Term]
id: UBERON:0002466
name: intestine secretion
alt_id: UBERON:MA_0002515-FMA_62974
def: "Clear to pale yellow watery secretions from the glands lining the small intestine walls. Secretion is stimulated by the mechanical pressure of partly digested food in the intestine." [Wikipedia:Succus_entericus]
subset: uberon_slim
synonym: "Succus entericus" EXACT [FMA:62974]
synonym: "succus entericus" EXACT []
xref: FMA:62974
xref: MA:0002515
xref: ncithesaurus:Intestinal_Secretion
is_a: UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0002467
name: filiform papilla
alt_id: UBERON:MA_0002678-FMA_71447
def: "." [Wikipedia:Filiform_papilla]
subset: uberon_slim
synonym: "Filiform papillae" EXACT [FMA:71447]
synonym: "filiform papillae" EXACT []
synonym: "Filiform papillae set" EXACT [FMA:71447]
synonym: "filiform papillae set" EXACT []
xref: FMA:71447
xref: MA:0002678
xref: ncithesaurus:Filiform_Papilla
is_a: UBERON:0001726 ! papilla of tongue
[Term]
id: UBERON:0002468
name: foliate papilla
alt_id: UBERON:MA_0002679-FMA_71450
def: "." [Wikipedia:Foliate_papilla]
subset: uberon_slim
synonym: "Foliate papillae" EXACT [FMA:71450]
synonym: "foliate papillae" EXACT []
synonym: "Foliate papillae set" EXACT [FMA:71450]
synonym: "foliate papillae set" EXACT []
xref: FMA:71450
xref: MA:0002679
xref: ncithesaurus:Foliate_Papilla
is_a: UBERON:0001726 ! papilla of tongue
[Term]
id: UBERON:0002469
name: esophagus mucosa
alt_id: UBERON:0003345
alt_id: UBERON:MA_0002680-FMA_62996
synonym: "esophageal mucosa" EXACT []
synonym: "esophagus mucosa" EXACT [FMA:62996]
synonym: "mucous membrane of esophagus" EXACT []
synonym: "mucous membrane of oesophagus" EXACT [FMA:62996]
synonym: "muscularis mucosae of oesophagus" EXACT [FMA:62996]
synonym: "oesophageal mucosa" EXACT [FMA:62996]
synonym: "oesophagus mucosa" EXACT []
xref: BTO:0002859
xref: EMAPA:26981
xref: EMAPA:26991
xref: FMA:62996
xref: MA:0002680
xref: ncithesaurus:Esophageal_Mucosa
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001043 ! esophagus
relationship: constitutional_part_of UBERON:0001096 ! wall of esophagus
relationship: part_of UBERON:0001096 ! wall of esophagus
[Term]
id: UBERON:0002470
name: autopod
alt_id: UBERON:MA_0002714-MIAA_0000091
def: "Terminal segment of free upper limb. The generic name for hand, paw, foot etc" [UBERON:cjm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "distal free limb segment" EXACT []
synonym: "paw" RELATED []
synonym: "pod" RELATED []
xref: EFO:0000877
xref: FMA:83015
xref: MA:0002714
xref: MAT:0000091
xref: MIAA:0000091
is_a: UBERON:0002529 ! limb segment
[Term]
id: UBERON:0002471
name: zeugopod
alt_id: UBERON:MA_0002716-MIAA_0000092
def: "The middle part of the limb (e.g. between the elbow and wrist)" []
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "middle limb segment" EXACT []
synonym: "middle part of limb" BROAD []
xref: EFO:0000878
xref: MA:0002716
xref: MAT:0000092
xref: MIAA:0000092
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0002472
name: stylopod
alt_id: UBERON:MA_0002717-MIAA_0000093
def: "Limb segment that is the proximal part of the limb (e.g. between shoulder and elbow)." []
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "proximal part of limb" BROAD []
xref: EFO:0000879
xref: MA:0002717
xref: MAT:0000093
xref: MIAA:0000093
is_a: UBERON:0002529 ! limb segment
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0002473
name: intercerebral commissure
alt_id: UBERON:MA_0002721-FMA_67930
synonym: "interhemispheric commissure" RELATED [MA:0002721]
xref: FMA:67930
xref: MA:0002721
is_a: UBERON:0001020 ! commissure
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001893 ! telencephalon
relationship: part_of UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002474
name: cerebellar peduncle
alt_id: UBERON:MA_0002742-FMA_77791
def: "." [Wikipedia:Cerebellar_peduncle]
subset: uberon_slim
synonym: "Cerebellar peduncles" EXACT [FMA:77791]
synonym: "cerebellar peduncles" EXACT []
synonym: "Cerebellar peduncles set" EXACT [FMA:77791]
synonym: "cerebellar peduncles set" EXACT []
xref: FMA:77791
xref: MA:0002742
is_a: UBERON:0002317 ! white matter of cerebellum
[Term]
id: UBERON:0002475
name: saphenous nerve
alt_id: UBERON:MA_0002761-FMA_45262
def: "." [Wikipedia:Saphenous_nerve]
subset: uberon_slim
xref: FMA:45262
xref: MA:0002761
xref: OpenCyc:Mx4rvY0kgpwpEbGdrcN5Y29ycA
is_a: UBERON:0002003 ! peripheral nerve
relationship: branch_of UBERON:0001267 ! femoral nerve
[Term]
id: UBERON:0002476
name: lateral globus pallidus
alt_id: UBERON:MA_0002767-FMA_61839
def: "." [Wikipedia:Lateral_globus_pallidus]
subset: uberon_slim
synonym: "External globus pallidus" EXACT [FMA:61839]
synonym: "external globus pallidus" EXACT []
synonym: "Globus pallidus external segment" EXACT [FMA:61839]
synonym: "globus pallidus external segment" RELATED [MA:0002767]
synonym: "Globus pallidus externus" EXACT [FMA:61839]
synonym: "globus pallidus externus" EXACT []
synonym: "Globus pallidus lateral segment" EXACT [FMA:61839]
synonym: "globus pallidus lateral segment" RELATED [MA:0002767]
synonym: "Globus pallidus, lateral segment" EXACT [FMA:61839]
synonym: "globus pallidus, lateral segment" EXACT []
synonym: "Lateral pallidal segment" EXACT [FMA:61839]
synonym: "lateral pallidal segment" EXACT []
synonym: "Lateral part of globus pallidus" EXACT [FMA:61839]
synonym: "lateral part of globus pallidus" EXACT []
synonym: "Pallidus II" EXACT [FMA:61839]
synonym: "pallidus ii" EXACT []
xref: FMA:61839
xref: MA:0002767
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001875 ! globus pallidus
[Term]
id: UBERON:0002477
name: medial globus pallidus
alt_id: UBERON:MA_0002768-FMA_61840
def: "." [Wikipedia:Medial_globus_pallidus]
subset: uberon_slim
synonym: "entopeduncular nucleus" RELATED [MA:0002768]
synonym: "Entopeduncular nucleus (Monakow)" EXACT [FMA:61840]
synonym: "entopeduncular nucleus (monakow)" EXACT []
synonym: "globus pallidus inernal segment" RELATED [MA:0002768]
synonym: "Globus pallidus internal segment" EXACT [FMA:61840]
synonym: "globus pallidus internal segment" EXACT []
synonym: "Globus pallidus internus" EXACT [FMA:61840]
synonym: "globus pallidus internus" EXACT []
synonym: "Globus pallidus medial segment" EXACT [FMA:61840]
synonym: "globus pallidus medial segment" RELATED [MA:0002768]
synonym: "Globus pallidus, medial segment" EXACT [FMA:61840]
synonym: "globus pallidus, medial segment" EXACT []
synonym: "Internal globus pallidus" EXACT [FMA:61840]
synonym: "internal globus pallidus" EXACT []
synonym: "Medial pallidal segment" EXACT [FMA:61840]
synonym: "medial pallidal segment" EXACT []
synonym: "Medial part of globus pallidus" EXACT [FMA:61840]
synonym: "medial part of globus pallidus" EXACT []
synonym: "Mesial pallidum" EXACT [FMA:61840]
synonym: "mesial pallidum" EXACT []
synonym: "Pallidus I" EXACT [FMA:61840]
synonym: "pallidus i" EXACT []
xref: FMA:61840
xref: MA:0002768
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001875 ! globus pallidus
[Term]
id: UBERON:0002478
name: orbitosphenoid
alt_id: UBERON:MA_0002773-ZFA_0000253
synonym: "lesser wing of sphenoid bone" RELATED [MA:0002773]
xref: AAO:0000345
xref: HOG:0001153
xref: MA:0002773
xref: ZFA:0000253
is_a: UBERON:0002513 ! endochondral bone
relationship: part_of UBERON:0001677 ! sphenoid bone
[Term]
id: UBERON:0002479
name: dorsal lateral geniculate nucleus
alt_id: UBERON:MA_0002775-FMA_62214
synonym: "Dorsal lateral geniculate nucleus" EXACT [FMA:62214]
synonym: "dorsal nucleus of lateral geniculate body" RELATED [MA:0002775]
synonym: "Lateral geniculate complex, dorsal part" EXACT [FMA:62214]
synonym: "lateral geniculate complex, dorsal part" EXACT []
xref: FMA:62214
xref: MA:0002775
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001926 ! lateral geniculate body
[Term]
id: UBERON:0002480
name: ventral lateral geniculate nucleus
alt_id: UBERON:MA_0002776-FMA_62215
synonym: "Lateral geniculate complex, ventral part" EXACT [FMA:62215]
synonym: "lateral geniculate complex, ventral part" EXACT []
synonym: "Pregeniculate nucleus" EXACT [FMA:62215]
synonym: "pregeniculate nucleus" EXACT []
synonym: "Ventral lateral geniculate nucleus" EXACT [FMA:62215]
synonym: "ventral nucleus of lateral geniculate body" RELATED [MA:0002776]
xref: FMA:62215
xref: MA:0002776
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001926 ! lateral geniculate body
[Term]
id: UBERON:0002481
name: bone tissue
alt_id: UBERON:MA_0002780-FMA_224804
def: "." [Wikipedia:Bone_tissue]
subset: uberon_slim
xref: FMA:224804
xref: galen:BoneTissue
xref: MA:0002780
xref: ncithesaurus:Bone_Tissue
is_a: UBERON:0002384 ! connective tissue
relationship: part_of UBERON:0001474 ! bone
[Term]
id: UBERON:0002482
name: lamellar bone
alt_id: UBERON:MA_0002781-FMA_224806
xref: FMA:224806
xref: galen:LamellarBone
xref: MA:0002781
is_a: UBERON:0002481 ! bone tissue
[Term]
id: UBERON:0002483
name: trabecular bone
alt_id: UBERON:MA_0002782-FMA_24019
def: "." [Wikipedia:Trabecular_bone]
subset: uberon_slim
synonym: "Cancellous bone" EXACT [FMA:24019]
synonym: "cancellous bone" RELATED [MA:0002782]
synonym: "Spongy bone" EXACT [FMA:24019]
synonym: "spongy bone" EXACT []
synonym: "Trabecular bone tissue" EXACT [FMA:24019]
synonym: "trabecular bone tissue" EXACT []
xref: BTO:0001700
xref: FMA:24019
xref: MA:0002782
is_a: UBERON:0002481 ! bone tissue
[Term]
id: UBERON:0002484
name: bone marrow cavity
alt_id: UBERON:MA_0002783-FMA_75147
synonym: "Cavity of cancellous bone" EXACT [FMA:75147]
synonym: "cavity of cancellous bone" EXACT []
xref: FMA:75147
xref: MA:0002783
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0001439 ! compact bone
[Term]
id: UBERON:0002485
name: prostate duct
alt_id: UBERON:MA_0002785-FMA_19580
synonym: "Duct of prostate" EXACT [FMA:19580]
synonym: "duct of prostate" EXACT []
synonym: "Duct of prostate gland" EXACT [FMA:19580]
synonym: "duct of prostate gland" EXACT []
xref: FMA:19580
xref: MA:0002785
xref: ncithesaurus:Prostatic_Duct
is_a: UBERON:0000058 ! duct
intersection_of: UBERON:0000058 ! duct
intersection_of: part_of UBERON:0002367 ! prostate
relationship: part_of UBERON:0002367 ! prostate
[Term]
id: UBERON:0002486
name: glottis
alt_id: UBERON:MA_0002788-FMA_55414
def: "." [Wikipedia:Glottis]
subset: uberon_slim
xref: BTO:0001627
xref: FMA:55414
xref: MA:0002788
xref: ncithesaurus:Glottis
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0002487
name: tooth cavity
alt_id: UBERON:MA_0002792-FMA_55660
def: "." [Wikipedia:Tooth_cavity]
subset: uberon_slim
synonym: "Cavitas dentis" EXACT [FMA:55660]
synonym: "cavitas dentis" EXACT []
synonym: "cavity of tooth" RELATED [MA:0002792]
synonym: "Pulp cavity" EXACT [FMA:55660]
synonym: "pulp cavity" EXACT []
synonym: "Pulp cavity of tooth" EXACT [FMA:55660]
synonym: "pulp cavity of tooth" EXACT []
synonym: "Tooth cavity" EXACT [FMA:55660]
synonym: "tooth pulp cavity" RELATED [MA:0002792]
xref: FMA:55660
xref: MA:0002792
is_a: UBERON:0002558 ! organ cavity
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0002488
name: helix
alt_id: UBERON:MA_0002793-FMA_60992
def: "." [Wikipedia:Helix]
subset: uberon_slim
synonym: "Helical part of pinna" EXACT [FMA:60992]
synonym: "helical part of pinna" EXACT []
synonym: "Helix (Auricula)" EXACT [FMA:60992]
synonym: "helix (auricula)" EXACT []
synonym: "Helix of auricle of ear" EXACT [FMA:60992]
synonym: "helix of auricle of ear" EXACT []
synonym: "Helix of ear" EXACT [FMA:60992]
synonym: "helix of ear" EXACT []
synonym: "Helix of pinna" EXACT [FMA:60992]
synonym: "helix of pinna" EXACT []
xref: FMA:60992
xref: MA:0002793
xref: ncithesaurus:Helix
is_a: UBERON:0001444 ! subdivision of head
relationship: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0002489
name: coronal suture
alt_id: UBERON:MA_0002795-FMA_52928
def: "." [Wikipedia:Coronal_suture]
subset: uberon_slim
synonym: "Coronal suture of skull" EXACT [FMA:52928]
synonym: "coronal suture of skull" EXACT []
xref: FMA:52928
xref: MA:0002795
xref: OpenCyc:Mx4rv2eGHZwpEbGdrcN5Y29ycA
is_a: UBERON:0000969 ! suture
relationship: systemic_part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0002490
name: frontal suture
alt_id: UBERON:MA_0002796-FMA_52989
def: "." [Wikipedia:Frontal_suture]
subset: uberon_slim
synonym: "Frontal suture of skull" EXACT [FMA:52989]
synonym: "frontal suture of skull" EXACT []
synonym: "Metopic suture" EXACT [FMA:52989]
synonym: "metopic suture" RELATED [MA:0002796]
synonym: "Sutura frontalis" EXACT [FMA:52989]
synonym: "sutura frontalis" EXACT []
xref: FMA:52989
xref: MA:0002796
is_a: UBERON:0000969 ! suture
[Term]
id: UBERON:0002491
name: lambdoid suture
alt_id: UBERON:MA_0002797-FMA_52933
def: "." [Wikipedia:Lambdoid_suture]
subset: uberon_slim
synonym: "Lambdoid suture of skull" EXACT [FMA:52933]
synonym: "lambdoid suture of skull" EXACT []
synonym: "lambdoidal suture" RELATED [MA:0002797]
xref: FMA:52933
xref: MA:0002797
is_a: UBERON:0000969 ! suture
relationship: systemic_part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0002492
name: sagittal suture
alt_id: UBERON:MA_0002798-FMA_52929
def: "." [Wikipedia:Sagittal_suture]
subset: uberon_slim
synonym: "Sagittal suture of skull" EXACT [FMA:52929]
synonym: "sagittal suture of skull" EXACT []
xref: FMA:52929
xref: MA:0002798
is_a: UBERON:0000969 ! suture
relationship: systemic_part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0002493
name: uterine artery
alt_id: UBERON:MA_0002799-FMA_18829
def: "." [Wikipedia:Uterine_artery]
subset: uberon_slim
xref: FMA:18829
xref: MA:0002799
is_a: UBERON:0001637 ! artery
is_a: UBERON:0003520 ! implied link automatically realized ! pelvis blood vessel
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0002494
name: papillary muscle
alt_id: UBERON:MA_0002800-FMA_12154
def: "." [Wikipedia:Papillary_muscle]
subset: uberon_slim
synonym: "Papillary muscle of ventricle" EXACT [FMA:12154]
synonym: "papillary muscle of ventricle" RELATED [MA:0002800]
synonym: "ventricular papillary muscle" RELATED [MA:0002800]
xref: EHDAA:8655
xref: FMA:12154
xref: HOG:0001392
xref: MA:0002800
xref: ncithesaurus:Papillary_Muscle
xref: OpenCyc:Mx4rDid0jLYYEduAAAACs2IKfQ
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0002082 ! cardiac ventricle
[Term]
id: UBERON:0002495
name: long bone
alt_id: UBERON:MA_0002802-FMA_7474
def: "." [Wikipedia:Long_bone]
subset: uberon_slim
xref: FMA:7474
xref: MA:0002802
xref: ncithesaurus:Long_Bone
xref: OpenCyc:Mx4rv6axr5wpEbGdrcN5Y29ycA
is_a: UBERON:0001474 ! bone
relationship: part_of UBERON:0002091 ! appendicular skeleton
relationship: systemic_part_of UBERON:0001434 ! skeleton
[Term]
id: UBERON:0002496
name: stapes base
alt_id: UBERON:MA_0002804-FMA_52769
def: "." [Wikipedia:Footplate]
subset: uberon_slim
synonym: "base of stapes" RELATED [MA:0002804]
synonym: "Footplate" EXACT [FMA:52769]
synonym: "footplate" EXACT []
synonym: "Stapes base" EXACT [FMA:52769]
synonym: "stapes footplate" RELATED [MA:0002804]
xref: EHDAA:5143
xref: EHDAA:6096
xref: FMA:52769
xref: MA:0002804
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001687 ! stapes
[Term]
id: UBERON:0002497
name: acromion
alt_id: UBERON:MA_0002805-FMA_23260
def: "." [Wikipedia:Acromion]
subset: uberon_slim
xref: AAO:0000826
xref: FMA:23260
xref: MA:0002805
xref: ncithesaurus:Acromion
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001124 ! scapula
[Term]
id: UBERON:0002498
name: deltoid tuberosity
alt_id: UBERON:MA_0002808-FMA_23418
def: "." [Wikipedia:Deltoid_tuberosity]
subset: uberon_slim
synonym: "Deltoid tuberosity" EXACT [FMA:23418]
synonym: "Tuberositas deltoidea (Corpus humeri)" EXACT [FMA:23418]
synonym: "tuberositas deltoidea (corpus humeri)" EXACT []
xref: FMA:23418
xref: MA:0002808
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002499
name: cochlear labyrinth
alt_id: UBERON:MA_0002809-FMA_61259
def: "." [Wikipedia:Cochlear_labyrinth]
subset: uberon_slim
xref: FMA:61259
xref: MA:0002809
xref: ncithesaurus:Cochlear_Labyrinth
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001844 ! cochlea
relationship: part_of UBERON:0001849 ! membranous labyrinth
[Term]
id: UBERON:0002500
name: zygomatic arch
alt_id: UBERON:MA_0002810-FMA_53120
def: "." [Wikipedia:Zygomatic_arch]
subset: uberon_slim
synonym: "Zygoma" EXACT [FMA:53120]
synonym: "zygoma" EXACT []
xref: FMA:53120
xref: MA:0002810
xref: ncithesaurus:Zygomatic_Arch
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0002501
name: oval window
alt_id: UBERON:MA_0002813-FMA_56913
def: "." [Wikipedia:Oval_window]
subset: uberon_slim
synonym: "Oval window of petrous part of temporal bone" EXACT [FMA:56913]
synonym: "oval window of petrous part of temporal bone" EXACT []
synonym: "Vestibular window" EXACT [FMA:56913]
synonym: "vestibular window" RELATED [MA:0002813]
xref: FMA:56913
xref: MA:0002813
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001694 ! petrous part of temporal bone
[Term]
id: UBERON:0002502
name: round window
alt_id: UBERON:MA_0002814-FMA_56932
def: "." [Wikipedia:Round_window]
subset: uberon_slim
synonym: "Cochlear window" EXACT [FMA:56932]
synonym: "cochlear window" RELATED [MA:0002814]
synonym: "Round window of petrous part of temporal bone" EXACT [FMA:56932]
synonym: "round window of petrous part of temporal bone" EXACT []
xref: FMA:56932
xref: MA:0002814
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0001694 ! petrous part of temporal bone
[Term]
id: UBERON:0002503
name: greater trochanter
alt_id: UBERON:MA_0002822-FMA_32852
def: "." [Wikipedia:Greater_trochanter]
subset: uberon_slim
synonym: "Greater trochanter of femur" EXACT [FMA:32852]
synonym: "greater trochanter of femur" EXACT []
xref: FMA:32852
xref: galen:GreaterTrochanter
xref: MA:0002822
is_a: UBERON:0000980 ! trochanter
[Term]
id: UBERON:0002504
name: lesser trochanter
alt_id: UBERON:MA_0002823-FMA_32853
def: "." [Wikipedia:Lesser_trochanter]
subset: uberon_slim
synonym: "Lesser trochanter of femur" EXACT [FMA:32853]
synonym: "lesser trochanter of femur" EXACT []
xref: FMA:32853
xref: galen:LesserTrochanter
xref: MA:0002823
xref: ncithesaurus:Lesser_Trochanter
is_a: UBERON:0000980 ! trochanter
[Term]
id: UBERON:0002505
name: spiral modiolar artery
alt_id: UBERON:MA_0002824-FMA_52312
xref: FMA:52312
xref: MA:0002824
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0002506
name: iris epithelium
alt_id: UBERON:MA_0002826-FMA_58517
synonym: "Epithelium pigmentosum (Iris)" EXACT [FMA:58517]
synonym: "epithelium pigmentosum (iris)" EXACT []
synonym: "Iris epithelium" EXACT [FMA:58517]
synonym: "iris pigmented epithelium" RELATED [MA:0002826]
synonym: "Pigmented epithelium of iris" EXACT [FMA:58517]
synonym: "pigmented epithelium of iris" EXACT []
xref: FMA:58517
xref: MA:0002826
is_a: UBERON:0000488 ! atypical epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001769 ! iris
relationship: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0002507
name: abdominal lymph node
alt_id: UBERON:MA_0002827-FMA_12787
synonym: "Lymph node of abdomen" EXACT [FMA:12787]
synonym: "lymph node of abdomen" EXACT []
xref: FMA:12787
xref: MA:0002827
is_a: UBERON:0000029 ! lymph node
intersection_of: UBERON:0000029 ! lymph node
intersection_of: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0002508
name: celiac lymph node
alt_id: UBERON:MA_0002828-FMA_12792
def: "." [Wikipedia:Celiac_lymph_node]
subset: uberon_slim
synonym: "Celiac node" EXACT [FMA:12792]
synonym: "celiac node" EXACT []
synonym: "Coeliac node" EXACT [FMA:12792]
synonym: "coeliac node" EXACT []
synonym: "Nodus lymphaticus coeliacus" EXACT [FMA:12792]
synonym: "nodus lymphaticus coeliacus" EXACT []
synonym: "Terminal ventral aortic node" EXACT [FMA:12792]
synonym: "terminal ventral aortic node" EXACT []
xref: FMA:12792
xref: MA:0002828
xref: ncithesaurus:Celiac_Lymph_Node
is_a: UBERON:0002507 ! abdominal lymph node
[Term]
id: UBERON:0002509
name: mesenteric lymph node
alt_id: UBERON:MA_0002829-FMA_12795
synonym: "Mesenteric node" EXACT [FMA:12795]
synonym: "mesenteric node" EXACT []
xref: BTO:0000767
xref: FMA:12795
xref: MA:0002829
is_a: UBERON:0002507 ! abdominal lymph node
[Term]
id: UBERON:0002510
name: anterior fontanel
alt_id: UBERON:MA_0002830-FMA_75439
xref: FMA:75439
xref: MA:0002830
is_a: UBERON:0002221 ! fontanelle
[Term]
id: UBERON:0002511
name: trabecula carnea
alt_id: UBERON:MA_0002831-FMA_7269
synonym: "heart trabecula" RELATED []
synonym: "trabecula of heart" RELATED []
xref: FMA:7269
xref: MA:0002831
is_a: UBERON:0000440 ! trabecula
relationship: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0002512
name: corpus luteum
alt_id: UBERON:MA_0002834-FMA_18619
def: "." [Wikipedia:Corpus_luteum]
subset: uberon_slim
synonym: "Corpus luteum of ovary" EXACT [FMA:18619]
synonym: "corpus luteum of ovary" EXACT []
xref: BTO:0000292
xref: FMA:18619
xref: MA:0002834
xref: ncithesaurus:Corpus_Luteum
is_a: UBERON:0000064 ! organ part
relationship: develops_from UBERON:0001305 ! follicle of ovary
relationship: part_of UBERON:0000949 ! endocrine system
relationship: part_of UBERON:0000992 ! ovary
[Term]
id: UBERON:0002513
name: endochondral bone
alt_id: UBERON:MA_0002836-ZFA_0001591
def: "." [Wikipedia:Endochondral_bone]
subset: uberon_slim
xref: BTO:0002157
xref: MA:0002836
xref: ZFA:0001591
is_a: UBERON:0001474 ! bone
is_a: UBERON:0002481 ! bone tissue
[Term]
id: UBERON:0002514
name: intramembranous bone
alt_id: UBERON:MA_0002837-ZFA_0001635
xref: MA:0002837
xref: ZFA:0001635
is_a: UBERON:0001474 ! bone
relationship: develops_from UBERON:0003104 ! mesenchyme
[Term]
id: UBERON:0002515
name: periosteum
alt_id: UBERON:MA_0002838-FMA_24041
def: "." [Wikipedia:Periosteum]
subset: uberon_slim
xref: BTO:0001022
xref: FMA:24041
xref: MA:0002838
xref: ncithesaurus:Periosteum
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0001474 ! bone
[Term]
id: UBERON:0002516
name: epiphyseal plate
alt_id: UBERON:MA_0002839-FMA_75427
def: "." [Wikipedia:Epiphyseal_plate]
subset: uberon_slim
synonym: "Epiphyseal plate" EXACT [FMA:75427]
synonym: "Growth plate" EXACT [FMA:75427]
synonym: "growth plate" RELATED [MA:0002839]
xref: FMA:75427
xref: MA:0002839
is_a: UBERON:0002384 ! connective tissue
[Term]
id: UBERON:0002517
name: basicranium
alt_id: UBERON:MA_0002840-FMA_52801
def: "." [Wikipedia:Base_of_skull]
subset: uberon_slim
synonym: "Base of skull" EXACT [FMA:52801]
synonym: "base of skull" EXACT []
synonym: "Cranial base" EXACT [FMA:52801]
synonym: "cranial base" RELATED [MA:0002840]
xref: FMA:52801
xref: MA:0002840
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000032 ! cranial structure
relationship: systemic_part_of UBERON:0001703 ! neurocranium
[Term]
id: UBERON:0002518
name: otolith organ
alt_id: UBERON:MA_0002841-ZFA_0000559
def: "." [Wikipedia:Otolith_organ]
subset: uberon_slim
synonym: "otolith organs" RELATED [ZFA:0000559]
xref: MA:0002841
xref: ZFA:0000559
relationship: part_of UBERON:0001862 ! vestibular labyrinth
[Term]
id: UBERON:0002519
name: otolithic membrane
alt_id: UBERON:MA_0002842-FMA_75573
def: "." [Wikipedia:Otolithic_membrane]
subset: uberon_slim
synonym: "Otolithic membrane" EXACT [FMA:75573]
xref: FMA:75573
xref: MA:0002842
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: part_of UBERON:0001862 ! vestibular labyrinth
[Term]
id: UBERON:0002520
name: submandibular lymph node
alt_id: UBERON:MA_0002843-FMA_61224
def: "." [Wikipedia:Submandibular_lymph_node]
subset: uberon_slim
synonym: "Level Ib neck node" EXACT [FMA:61224]
synonym: "level ib neck node" EXACT []
synonym: "Submandibular node" EXACT [FMA:61224]
synonym: "submandibular node" EXACT []
xref: BTO:0000769
xref: FMA:61224
xref: MA:0002843
is_a: UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002521
name: elastic tissue
alt_id: UBERON:MA_0002853-FMA_20113
def: "." [Wikipedia:Elastic_tissue]
subset: uberon_slim
synonym: "Elastic connective tissue" EXACT [FMA:20113]
synonym: "elastic connective tissue" EXACT []
synonym: "Textus connectivus elasticus" EXACT [FMA:20113]
synonym: "textus connectivus elasticus" EXACT []
xref: FMA:20113
xref: MA:0002853
is_a: UBERON:0002384 ! connective tissue
[Term]
id: UBERON:0002522
name: tunica media
alt_id: UBERON:MA_0002855-FMA_55590
def: "." [Wikipedia:Tunica_media]
subset: uberon_slim
xref: FMA:55590
xref: MA:0002855
xref: ncithesaurus:Tunica_Media
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002523
name: tunica intima
alt_id: UBERON:MA_0002861-FMA_55589
def: "." [Wikipedia:Tunica_intima]
subset: uberon_slim
xref: FMA:55589
xref: MA:0002861
xref: ncithesaurus:Tunica_Intima
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002524
name: mediastinal lymph node
alt_id: UBERON:MA_0002877-FMA_12774
synonym: "Mediastinal node" EXACT [FMA:12774]
synonym: "mediastinal node" EXACT []
xref: EFO:0001670
xref: FMA:12774
xref: MA:0002877
xref: ncithesaurus:Mediastinal_Lymph_Node
is_a: UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002525
name: brachial lymph node
alt_id: UBERON:MA_0002878-FMA_44314
xref: FMA:44314
xref: MA:0002878
is_a: UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002526
name: lumbar lymph node
alt_id: UBERON:MA_0002879-FMA_84599
xref: FMA:84599
xref: MA:0002879
is_a: UBERON:0002507 ! abdominal lymph node
[Term]
id: UBERON:0002527
name: pancreatic lymph node
alt_id: UBERON:MA_0002881-FMA_16626
synonym: "Pancreatic node" EXACT [FMA:16626]
synonym: "pancreatic node" EXACT []
synonym: "pyloric lymph node" RELATED [MA:0002881]
xref: FMA:16626
xref: MA:0002881
is_a: UBERON:0002507 ! abdominal lymph node
intersection_of: UBERON:0000029 ! lymph node
intersection_of: part_of UBERON:0001264 ! pancreas
[Term]
id: UBERON:0002528
name: sacral lymph node
alt_id: UBERON:MA_0002883-FMA_16655
synonym: "Sacral node" EXACT [FMA:16655]
synonym: "sacral node" EXACT []
xref: FMA:16655
xref: MA:0002883
is_a: UBERON:0000029 ! lymph node
[Term]
id: UBERON:0002529
name: limb segment
alt_id: UBERON:MA_0002889-FMA_9661
synonym: "Limb region" EXACT [FMA:9661]
synonym: "limb region" EXACT []
synonym: "Region of limb" EXACT [FMA:9661]
synonym: "region of limb" EXACT []
synonym: "Segment of limb" EXACT [FMA:9661]
synonym: "segment of limb" EXACT []
synonym: "Subdivision of limb" EXACT [FMA:9661]
synonym: "subdivision of limb" EXACT []
xref: FMA:9661
xref: MA:0002889
is_a: UBERON:0000914 ! implied link automatically realized ! segment
intersection_of: UBERON:0000914 ! segment
intersection_of: part_of UBERON:0002101 ! limb
relationship: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0002530
name: gland
alt_id: UBERON:MIAA_0000021
def: "A gland is an organ in an animal's body that synthesizes a substance for release such as hormones or breast milk, often into the bloodstream (endocrine gland) or into cavities inside the body or its outer surface (exocrine gland). A gland is an organ specialised for secretion[GO]." [Wikipedia:Gland, WikiPedia:Gland]
comment: none of the major vertebrate ontologies have a class called gland. Is this superfluous?
subset: uberon_slim
xref: AAO:0000212
xref: BTO:0000522
xref: EFO:0000797
xref: EHDAA:2161
xref: EHDAA:2181
xref: EHDAA:2967
xref: EHDAA:4475
xref: EHDAA:6522
xref: FMA:71481
xref: FMA:86294
xref: galen:Gland
xref: HAO:0000375
xref: MAT:0000021
xref: MIAA:0000021
xref: ncithesaurus:Gland
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0002531
name: fin bud
alt_id: UBERON:MIAA_0000062-ZFA_0001383
comment: This class was created automatically from a combination of ontologies
xref: MAT:0000062
xref: MIAA:0000062
xref: TAO:0001383
xref: ZFA:0001383
is_a: UBERON:0002050 ! embryonic structure
is_a: UBERON:0003102 ! surface structure
[Term]
id: UBERON:0002532
name: epiblast
alt_id: UBERON:MIAA_0000067-ZFA_0000018
def: "The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation. Kimmel et al, 1995." [Wikipedia:Epiblast, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "blastocyst" RELATED []
xref: EHDAA:42
xref: EHDAA:75
xref: HOG:0000243
xref: MAT:0000067
xref: MIAA:0000067
xref: ncithesaurus:Epiblast
xref: TAO:0000018
xref: ZFA:0000018
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000091 ! bilaminar disc
relationship: part_of UBERON:0002541 ! germ ring
[Term]
id: UBERON:0002533
name: tail bud
alt_id: UBERON:MIAA_0000070-XAO_0000107-ZFA_0000077
def: "Rapidly proliferating mass of cells at the caudal extremity of the embryo. Its formation is reflected in a caudal carving of the posterior portion of the archenteric canal at NF stage 22. With its further outgrowth, the postanal gut primordium becomes stretched. Its lumen is in broad communication with the hindgut at NF stage 25." [ISBN:0815318960, OMD:tail+bud]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "tailbud" EXACT []
xref: BTO:0001445
xref: EFO:0002748
xref: EHDAA:1595
xref: HOG:0000201
xref: MAT:0000070
xref: MIAA:0000070
xref: TAO:0000077
xref: XAO:0000107
xref: XAO:1000007
xref: ZFA:0000077
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0002534
name: fin
alt_id: UBERON:MIAA_0000087-XAO_0000002-ZFA_0000108
def: "used to produce lift and thrust or to steer while traveling in water, air, or other fluid media. The first use of the word was for the limbs of fish, but has been extended to include other animal limbs and man-made devices. Examples: teleost fin, tadpole fin." [Wikipedia:Fin]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "fins" RELATED []
xref: EFO:0000875
xref: MAT:0000087
xref: MIAA:0000087
xref: OpenCyc:Mx4rvVjcBZwpEbGdrcN5Y29ycA
xref: TAO:0000108
xref: XAO:0000002
xref: ZFA:0000108
is_a: UBERON:0003102 ! surface structure
relationship: develops_from UBERON:0002531 ! fin bud
[Term]
id: UBERON:0002535
name: gill
alt_id: UBERON:MIAA_0000134-XAO_0000120-ZFA_0000354
def: "Anatomical surface structure found in many aquatic organisms. It is a respiration organ whose function is the extraction of oxygen from water and the excretion of carbon dioxide. The microscopic structure of a gill is such that it presents a very large surface area to the external environment. Gills usually consist of thin filaments of tissue, branches, or slender tufted processes which have a highly folded surface to increase surface area. A high surface area is crucial to the gas exchange of aquatic organisms as water contains only 1/20 parts dissolved Oxygen compared to air. With the exception of some aquatic insects, the filaments and lamellae (folds) contain blood or coelomic fluid, from which gases are exchanged through the thin walls. Oxygen is carried by the blood to other parts of the body. Carbon dioxide passes from the blood through the thin gill tissue into the water. Gills or gill-like organs, located in different parts of the body, are found in various groups of aquatic animals, including mollusks, crustaceans, insects, fish, and amphibians." [Wikipedia:Gill]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "external gill" RELATED []
synonym: "gills" RELATED []
xref: BTO:0000518
xref: EFO:0000933
xref: GAID:1218
xref: HOG:0001214
xref: MAT:0000134
xref: MIAA:0000134
xref: OpenCyc:Mx4rvVi9dZwpEbGdrcN5Y29ycA
xref: TAO:0000354
xref: XAO:0000120
xref: ZFA:0000354
is_a: UBERON:0003102 ! surface structure
relationship: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0002536
name: arthropod sensillum
alt_id: UBERON:MIAA_0000163-WBbt_0006929
def: "Sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organised unit with a largely bona-fide boundary.[FBbt]" [FBbt:00007152, WB:rynl, Wikipedia:Sensillum]
subset: uberon_slim
synonym: "sensillum" EXACT [FBbt:00007152, HAO:0000933]
xref: BTO:0001237
xref: EFO:0000939
xref: FBbt:00007152
xref: HAO:0000933
xref: MAT:0000163
xref: MIAA:0000163
is_a: UBERON:0000020 ! sense organ
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0002537
name: hermaphrodite gonad
alt_id: UBERON:MIAA_0000165-WBbt_0005178
def: "organ in hermaphrodite animal that produces both ova and sperm." [WB:rynl]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "ovotestis" RELATED []
xref: EFO:0000971
xref: MAT:0000165
xref: MIAA:0000165
xref: WBbt:0005178
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000991 ! gonad
relationship: part_of UBERON:0000990 ! reproductive system
[Term]
id: UBERON:0002538
name: hatching gland
alt_id: UBERON:MIAA_0000180-XAO_0000034-ZFA_0000026
def: "A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. Kimmel et al, 1995." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "frontal gland" RELATED []
synonym: "hgg" RELATED []
xref: BTO:0000558
xref: EFO:0000863
xref: HOG:0000078
xref: MAT:0000180
xref: MIAA:0000180
xref: TAO:0000026
xref: XAO:0000034
xref: ZFA:0000026
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0002539
name: pharyngeal arch
alt_id: UBERON:MIAA_0000242-XAO_0000096-ZFA_0001306
def: "One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo." [NLM:branchial+arch, Wikipedia:Pharyngeal_arch]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "pharyngeal arches" RELATED []
synonym: "visceral arch" RELATED []
xref: EFO:0000959
xref: HOG:0000155
xref: MAT:0000242
xref: MIAA:0000242
xref: ncithesaurus:Pharyngeal_Arch
xref: TAO:0001306
xref: XAO:0000096
xref: ZFA:0001306
is_a: UBERON:0000481 ! multi-tissue structure
[Term]
id: UBERON:0002540
name: lateral line system
alt_id: UBERON:MIAA_0000249-XAO_0000095-ZFA_0000034
def: "a line of neuroblasts along the sides of fish and amphibia that detect vibrations and pressure changes // Surface structure that has as it parts the sense organs that detect vibrations carried through water, develops during late tailbud stage, and persists in the adult bearing elaborate dorsal and ventral components. // A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ISBN:0471209627, ISBN:0815318960, Wikipedia:Lateral_line_system, ZFIN:curator]
comment: TODO - DV with CARO\nThis class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateral line stitches" RELATED []
synonym: "lateral-line organs" RELATED []
synonym: "ll" RELATED []
xref: AAO:0000269
xref: EFO:0000941
xref: HOG:0001243
xref: MAT:0000249
xref: MIAA:0000249
xref: TAO:0000034
xref: XAO:0000095
xref: ZFA:0000034
is_a: UBERON:0001032 ! sense organ system
is_a: UBERON:0003102 ! surface structure
[Term]
id: UBERON:0002541
name: germ ring
alt_id: UBERON:MIAA_0000255-ZFA_0000111
comment: This class was created automatically from a combination of ontologies
xref: AAO:0000211
xref: MAT:0000255
xref: MIAA:0000255
xref: TAO:0000111
xref: ZFA:0000111
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0002542
name: scale
alt_id: UBERON:MIAA_0000257-ZFA_0000277
def: "A small rigid plate that grows out of an animal's skin to provide protection. In lepidopteran (butterfly and moth) species, scales are plates on the surface of the insect wing, and provide coloration. Scales are quite common and have evolved multiple times with varying structure and function." [Wikipedia:Scale_(zoology)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "scales" RELATED []
xref: EFO:0000960
xref: HAO:0000907
xref: MAT:0000257
xref: MIAA:0000257
xref: ncithesaurus:Scale
xref: OpenCyc:Mx4rvVi9M5wpEbGdrcN5Y29ycA
xref: TAO:0000277
xref: ZFA:0000277
is_a: UBERON:0000021 ! cutaneous appendage
relationship: part_of UBERON:0002067 ! dermis
[Term]
id: UBERON:0002543
name: median fin skeleton
alt_id: UBERON:MIAA_0000277-ZFA_0001123
comment: This class was created automatically from a combination of ontologies
synonym: "axial fin skeleton" EXACT []
synonym: "unpaired fin skeleton" RELATED []
xref: EFO:0000950
xref: MAT:0000277
xref: MIAA:0000277
xref: TAO:0001123
xref: ZFA:0001123
is_a: UBERON:0002090 ! axial skeleton
[Term]
id: UBERON:0002544
name: digit
alt_id: UBERON:MIAA_0000285-XAO_0003035-XAO_0003036
def: "." [Wikipedia:Digit_(anatomy)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EFO:0000881
xref: FMA:85518
xref: galen:Digit
xref: HOG:0000944
xref: MA:0000690
xref: MAT:0000285
xref: MIAA:0000285
xref: ncithesaurus:Digit
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0002545
name: body ganglion
alt_id: UBERON:MIAA_0000344-WBbt_0005332
comment: This class was created automatically from a combination of ontologies
synonym: "trunk ganglion" RELATED []
xref: EFO:0000901
xref: MAT:0000344
xref: MIAA:0000344
xref: WBbt:0005332
is_a: UBERON:0000045 ! ganglion
[Term]
id: UBERON:0002546
name: cranial placode
alt_id: UBERON:MIAA_0000369-XAO_0000305
comment: This class was created automatically from a combination of ontologies
synonym: "cranial placodes" RELATED []
synonym: "neurogenic placode" RELATED []
xref: MAT:0000369
xref: MIAA:0000369
xref: XAO:0000305
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000924 ! ectoderm
[Term]
id: UBERON:0002547
name: tadpole
alt_id: UBERON:MIAA_0000370-MIAA_0000400-XAO_1000008
def: "wholly aquatic larval stage in the life cycle of an amphibian, particularly of a frog or toad[WP]. XAO: The stages from feeding to the end of metamorphosis. Encompasses Weisz's first-form tadpole (equivalent to NF stages 45 to 49), second-form tadpole (NF 49 to 56) and third-form tadpole (NF 56 to 60-plus) stages." [ISBN:0471209627, ISSN:0003-276X, Wikipedia:Tadpole]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "tadpole stage" RELATED []
xref: BTO:0001347
xref: MAT:0000370
xref: MIAA:0000370
xref: XAO:1000008
is_a: UBERON:0002548 ! larva
[Term]
id: UBERON:0002548
name: larva
alt_id: UBERON:MIAA_0000400-FBbt_00001727
def: "a distinct juvenile form many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle." [Wikipedia:Larva]
comment: This class was created automatically from a combination of ontologies. TODO: discriminate between stages and organisms
subset: uberon_slim
synonym: "ammocoete" NARROW [Wikipedia:Larva]
synonym: "bipinnaria" NARROW [Wikipedia:Larva]
synonym: "caterpillar" NARROW [Wikipedia:Larva]
synonym: "glochidium" NARROW [Wikipedia:Larva]
synonym: "grub" NARROW [Wikipedia:Larva]
synonym: "leptocephalus" NARROW [Wikipedia:Larva]
synonym: "maggot" NARROW [Wikipedia:Larva]
synonym: "naiad" NARROW [Wikipedia:Larva]
synonym: "naupilus" NARROW [Wikipedia:Larva]
synonym: "nymph" NARROW [Wikipedia:Larva]
synonym: "planula" NARROW [Wikipedia:Larva]
synonym: "tadpole" NARROW [Wikipedia:Larva]
synonym: "trochophore" NARROW [Wikipedia:Larva]
synonym: "veliger" NARROW [Wikipedia:Larva]
synonym: "wriggler" NARROW [Wikipedia:Larva]
synonym: "zoea" NARROW [Wikipedia:Larva]
xref: BTO:0000707
xref: FBbt:00001727
xref: HAO:0000459
xref: MIAA:0000400
is_a: UBERON:0000061 ! anatomical structure
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: existence_starts_and_ends_during UBERON:0000069 ! larval stage
relationship: existence_starts_and_ends_during UBERON:0000069 ! larval stage
[Term]
id: UBERON:0002549
name: ventral trigeminal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1001-FMA_72506
def: "." [Wikipedia:Ventral_trigeminal_tract]
subset: uberon_slim
synonym: "anterior trigeminothalamic tract" EXACT [FMA:72506]
synonym: "trigeminal lemniscus-2" EXACT [FMA:72506]
synonym: "ventral crossed tract" EXACT [FMA:72506]
synonym: "ventral secondary ascending tract of V" EXACT [FMA:72506]
synonym: "ventral secondary ascending tract of v" EXACT []
synonym: "ventral trigeminal pathway" EXACT [FMA:72506]
synonym: "ventral trigeminothalamic tract" EXACT [FMA:72506]
xref: FMA:72506
xref: NIF_GrossAnatomy:birnlex_1001
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002550
name: anterior hypothalamic region
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1005-FMA_62027
synonym: "chiasmal zone" EXACT [FMA:62027]
xref: FMA:62027
xref: NIF_GrossAnatomy:birnlex_1005
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002551
name: interstitial nucleus of cajal
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1008-FMA_72432
synonym: "interstitial nucleus" EXACT [FMA:72432]
synonym: "interstitial nucleus of Cajal" EXACT [FMA:72432]
synonym: "interstitial nucleus of medial longitudinal fasciculus (Crosby)" EXACT [FMA:72432]
synonym: "interstitial nucleus of medial longitudinal fasciculus (crosby)" EXACT []
xref: FMA:72432
xref: NIF_GrossAnatomy:birnlex_1008
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002552
name: vestibulocerebellar tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1009-FMA_72508
def: "." [Wikipedia:Vestibulocerebellar_tract]
subset: uberon_slim
synonym: "vestibulocerebellar fibers" EXACT [FMA:72508]
xref: FMA:72508
xref: NIF_GrossAnatomy:birnlex_1009
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002553
name: anatomical cavity
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1011-FMA_67552
def: "Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina.\"" [FMA:67552]
synonym: "cavity" EXACT []
xref: FMA:67552
xref: NIF_GrossAnatomy:birnlex_1011
is_a: UBERON:0000464 ! anatomical space
relationship: location_of UBERON:0000463 ! portion of organism substance
[Term]
id: UBERON:0002554
name: regional part of superior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1014-FMA_85592
synonym: "segment of superior colliculus" EXACT [NIF_GrossAnatomy:birnlex_1014]
synonym: "superior colliculus segment" EXACT [FMA:85592]
xref: FMA:85592
xref: NIF_GrossAnatomy:birnlex_1014
is_a: UBERON:0002966 ! regional part of midbrain tectum
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001945 ! superior colliculus
[Term]
id: UBERON:0002555
name: intermediate hypothalamic region
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1015-FMA_62028
synonym: "intermediate hypothalamic area" EXACT [FMA:62028]
xref: FMA:62028
xref: NIF_GrossAnatomy:birnlex_1015
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: has_part UBERON:0001932 ! arcuate nucleus of hypothalamus
relationship: has_part UBERON:0001933 ! retrochiasmatic area
relationship: has_part UBERON:0001934 ! dorsomedial nucleus of hypothalamus
relationship: has_part UBERON:0001935 ! ventromedial nucleus of hypothalamus
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002556
name: corticotectal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1016-FMA_72419
synonym: "corticotectal fibers" EXACT [FMA:72419]
synonym: "corticotectal fibres" EXACT [FMA:72419]
xref: FMA:72419
xref: NIF_GrossAnatomy:birnlex_1016
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002557
name: linear nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1018-FMA_72436
xref: FMA:72436
xref: NIF_GrossAnatomy:birnlex_1018
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002558
name: organ cavity
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1019-FMA_12237
synonym: "cavity of organ" EXACT [FMA:12237]
xref: FMA:12237
xref: NIF_GrossAnatomy:birnlex_1019
is_a: UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0002559
name: medullary reticular formation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1020-FMA_72241
synonym: "bulbar reticular formation" EXACT [FMA:72241]
synonym: "reticular formation of medulla" EXACT [FMA:72241]
xref: FMA:72241
xref: NIF_GrossAnatomy:birnlex_1020
is_a: UBERON:0002275 ! reticular formation
intersection_of: UBERON:0002275 ! reticular formation
intersection_of: part_of UBERON:0000958 ! medulla
[Term]
id: UBERON:0002560
name: temporal operculum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1025-FMA_74891
synonym: "facies supratemporalis" EXACT [FMA:74891]
xref: FMA:74891
xref: NIF_GrossAnatomy:birnlex_1025
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002561
name: neuraxis cavity
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1029-FMA_75007
synonym: "cavity of ventricular system of neuraxis" EXACT [FMA:75007]
synonym: "neuraxis cavity" EXACT [FMA:75007]
xref: FMA:75007
xref: NIF_GrossAnatomy:birnlex_1029
is_a: UBERON:0002558 ! organ cavity
[Term]
id: UBERON:0002562
name: superior frontal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1030-FMA_83755
def: "." [Wikipedia:Superior_frontal_sulcus]
subset: uberon_slim
synonym: "sulcus f1" EXACT [FMA:83755]
synonym: "superior frontal fissure" EXACT [FMA:83755]
xref: FMA:83755
xref: ncithesaurus:Superior_Frontal_Sulcus
xref: NIF_GrossAnatomy:birnlex_1030
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002563
name: central nucleus of inferior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1035-FMA_72413
synonym: "chief nucleus of inferior colliculus" EXACT [FMA:72413]
synonym: "inferior colliculus, central nucleus" EXACT [FMA:72413]
synonym: "nucleus of inferior colliculus (Crosby)" EXACT [FMA:72413]
synonym: "nucleus of inferior colliculus (crosby)" EXACT []
xref: FMA:72413
xref: NIF_GrossAnatomy:birnlex_1035
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002917 ! implied link automatically realized ! regional part of inferior colliculus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0002564
name: lateral orbital gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1036-FMA_62418
xref: FMA:62418
xref: NIF_GrossAnatomy:birnlex_1036
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002565
name: olivary pretectal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1037-FMA_72405
def: "." [Wikipedia:Olivary_pretectal_nucleus]
subset: uberon_slim
synonym: "anterior pretectal nucleus" EXACT [FMA:72405]
synonym: "olivary nucleus of superior colliculus" EXACT [FMA:72405]
synonym: "pretectal olivary nucleus" EXACT [FMA:72405]
xref: FMA:72405
xref: NIF_GrossAnatomy:birnlex_1037
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0002566
name: superior precentral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1038-FMA_83763
synonym: "precentral dimple" EXACT [FMA:83763]
synonym: "superior part of precentral fissure" EXACT [FMA:83763]
xref: FMA:83763
xref: NIF_GrossAnatomy:birnlex_1038
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002567
name: basal part of pons
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1043-FMA_72244
synonym: "basal portion of pons" EXACT [FMA:72244]
synonym: "base of pons" EXACT [FMA:72244]
synonym: "basilar part of pons" EXACT [FMA:72244]
synonym: "pons proper" EXACT [FMA:72244]
synonym: "ventral portion of pons" EXACT [FMA:72244]
xref: FMA:72244
xref: NIF_GrossAnatomy:birnlex_1043
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
relationship: has_part UBERON:0002152 ! middle cerebellar peduncle
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002568
name: amiculum of dentate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1044-FMA_72546
synonym: "dentate nuclear amiculum" EXACT [FMA:72546]
xref: FMA:72546
xref: NIF_GrossAnatomy:birnlex_1044
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002317 ! implied link automatically realized ! white matter of cerebellum
relationship: part_of UBERON:0002132 ! dentate nucleus
[Term]
id: UBERON:0002569
name: transverse temporal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1045-FMA_83782
xref: FMA:83782
xref: NIF_GrossAnatomy:birnlex_1045
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002570
name: medial orbital gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1046-FMA_62419
xref: FMA:62419
xref: NIF_GrossAnatomy:birnlex_1046
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002571
name: external nucleus of inferior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1047-FMA_72412
xref: FMA:72412
xref: NIF_GrossAnatomy:birnlex_1047
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002917 ! implied link automatically realized ! regional part of inferior colliculus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0002572
name: principal pretectal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1048-FMA_72402
xref: FMA:72402
xref: NIF_GrossAnatomy:birnlex_1048
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0002573
name: pontine reticular formation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1050-FMA_68876
def: "." [Wikipedia:Pontine_reticular_formation]
subset: uberon_slim
synonym: "reticular formation of pons" EXACT [FMA:68876]
xref: FMA:68876
xref: NIF_GrossAnatomy:birnlex_1050
is_a: UBERON:0002275 ! reticular formation
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
intersection_of: UBERON:0002275 ! reticular formation
intersection_of: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002574
name: regional part of inferior olivary complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1052-FMA_71259
synonym: "inferior olivary complex segment" EXACT [FMA:71259]
synonym: "segment of inferior olivary complex" EXACT [NIF_GrossAnatomy:birnlex_1052]
xref: FMA:71259
xref: NIF_GrossAnatomy:birnlex_1052
is_a: UBERON:0002678 ! regional part of medulla oblongata
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002127 ! inferior olivary complex
[Term]
id: UBERON:0002575
name: posterior orbital gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1054-FMA_80184
xref: FMA:80184
xref: NIF_GrossAnatomy:birnlex_1054
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002576
name: temporal pole
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1055-FMA_74890
def: "." [Wikipedia:Temporal_pole]
subset: uberon_slim
xref: FMA:74890
xref: NIF_GrossAnatomy:birnlex_1055
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002577
name: pericentral nucleus of inferior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1056-FMA_72411
synonym: "cortex of inferior colliculus" EXACT [FMA:72411]
xref: FMA:72411
xref: NIF_GrossAnatomy:birnlex_1056
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002917 ! implied link automatically realized ! regional part of inferior colliculus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0002578
name: sublentiform nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1057-FMA_72404
xref: FMA:72404
xref: NIF_GrossAnatomy:birnlex_1057
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0002579
name: regional part of medullary reticular formation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1060-FMA_73730
synonym: "medullary reticular formation segment" EXACT [FMA:73730]
synonym: "segment of medullary reticular formation" EXACT [NIF_GrossAnatomy:birnlex_1060]
xref: FMA:73730
xref: NIF_GrossAnatomy:birnlex_1060
is_a: UBERON:0002678 ! regional part of medulla oblongata
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002559 ! medullary reticular formation
[Term]
id: UBERON:0002580
name: brachium of superior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1065-FMA_72417
def: "." [Wikipedia:Brachium_of_superior_colliculus]
subset: uberon_slim
synonym: "superior brachium" EXACT [FMA:72417]
synonym: "superior collicular brachium" EXACT [FMA:72417]
synonym: "superior colliculus brachium" EXACT [FMA:72417]
synonym: "superior quadrigeminal brachium" EXACT [FMA:72417]
xref: FMA:72417
xref: NIF_GrossAnatomy:birnlex_1065
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002554 ! implied link automatically realized ! regional part of superior colliculus
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001945 ! superior colliculus
[Term]
id: UBERON:0002581
name: postcentral gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1070-FMA_61896
def: "." [Wikipedia:Postcentral_gyrus]
subset: uberon_slim
synonym: "postcentral convolution" EXACT [FMA:61896]
synonym: "posterior central gyrus" EXACT [FMA:61896]
synonym: "postrolandic gyrus" EXACT [FMA:61896]
xref: EFO:0001383
xref: FMA:61896
xref: ncithesaurus:Postcentral_Gyrus
xref: NIF_GrossAnatomy:birnlex_1070
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0001872 ! parietal lobe
[Term]
id: UBERON:0002582
name: anterior calcarine sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1072-FMA_83750
synonym: "anterior calcarine fissure" EXACT [FMA:83750]
xref: FMA:83750
xref: NIF_GrossAnatomy:birnlex_1072
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002583
name: commissure of superior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1073-FMA_72418
synonym: "commissure of superior colliculi" EXACT [FMA:72418]
synonym: "superior colliculus commissure" EXACT [FMA:72418]
xref: FMA:72418
xref: NIF_GrossAnatomy:birnlex_1073
is_a: UBERON:0001020 ! commissure
is_a: UBERON:0002554 ! implied link automatically realized ! regional part of superior colliculus
intersection_of: UBERON:0001020 ! commissure
intersection_of: part_of UBERON:0001945 ! superior colliculus
relationship: part_of UBERON:0001945 ! superior colliculus
[Term]
id: UBERON:0002584
name: regional part of vestibular nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1080-FMA_71267
synonym: "segment of vestibular nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1080]
synonym: "vestibular nuclear complex segment" EXACT [FMA:71267]
xref: FMA:71267
xref: NIF_GrossAnatomy:birnlex_1080
is_a: UBERON:0002678 ! regional part of medulla oblongata
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002673 ! vestibular nuclear complex
[Term]
id: UBERON:0002585
name: central tegmental tract of midbrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1081-FMA_72456
xref: FMA:72456
xref: NIF_GrossAnatomy:birnlex_1081
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002586
name: calcarine sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1086-FMA_83749
def: "." [Wikipedia:Calcarine_sulcus]
subset: uberon_slim
synonym: "calcarine fissure" EXACT [FMA:83749]
xref: FMA:83749
xref: ncithesaurus:Calcarine_Sulcus
xref: NIF_GrossAnatomy:birnlex_1086
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002587
name: nucleus subceruleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1088-FMA_72479
synonym: "subcaerulean nucleus" EXACT [FMA:72479]
xref: FMA:72479
xref: NIF_GrossAnatomy:birnlex_1088
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002588
name: decussation of superior cerebellar peduncle
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1089-FMA_72455
def: "." [Wikipedia:Decussation_of_superior_cerebellar_peduncle]
subset: uberon_slim
synonym: "decussation of brachium conjunctivum" EXACT [FMA:72455]
synonym: "decussation of superior cerebellar peduncles" EXACT [FMA:72455]
synonym: "superior cerebellar peduncle decussation" EXACT [FMA:72455]
synonym: "wernekink's decussation" EXACT [FMA:72455]
xref: FMA:72455
xref: NIF_GrossAnatomy:birnlex_1089
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002589
name: lateral corticospinal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1095-FMA_72635
def: "." [Wikipedia:Lateral_corticospinal_tract]
subset: uberon_slim
synonym: "lateral pyramidal tract" EXACT [FMA:72635]
xref: FMA:72635
xref: NIF_GrossAnatomy:birnlex_1095
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002590
name: prepyriform area
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1097-FMA_62484
synonym: "lateral olfactory gyrus" EXACT [FMA:62484]
synonym: "piriform cortex (Price)" EXACT [FMA:62484]
synonym: "piriform cortex (price)" EXACT []
synonym: "prepiriform cortex" EXACT [FMA:62484]
synonym: "prepyriform cortex" EXACT [FMA:62484]
xref: FMA:62484
xref: NIF_GrossAnatomy:birnlex_1097
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002591
name: oral part of spinal trigeminal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1100-FMA_235322
xref: FMA:235322
xref: NIF_GrossAnatomy:birnlex_1100
is_a: UBERON:0002020 ! gray matter of neuraxis
relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve
[Term]
id: UBERON:0002592
name: juxtarestiform body
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1101-FMA_72613
def: "." [Wikipedia:Juxtarestiform_body]
subset: uberon_slim
xref: FMA:72613
xref: NIF_GrossAnatomy:birnlex_1101
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002593
name: orbital operculum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1102-FMA_74887
xref: FMA:74887
xref: NIF_GrossAnatomy:birnlex_1102
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002594
name: dentatothalamic tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1104-FMA_72462
def: "." [Wikipedia:Dentatothalamic_tract]
subset: uberon_slim
synonym: "dentatothalamic fibers" EXACT [FMA:72462]
xref: FMA:72462
xref: NIF_GrossAnatomy:birnlex_1104
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002595
name: orbital sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1112-FMA_83770
synonym: "orbital sulci" EXACT [FMA:83770]
xref: FMA:83770
xref: ncithesaurus:Orbital_Sulcus
xref: NIF_GrossAnatomy:birnlex_1112
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002596
name: ventral posterior nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1116-FMA_62187
def: "." [Wikipedia:Ventral_posterior_nucleus]
subset: uberon_slim
synonym: "ventral posterior thalamic nucleus" EXACT [FMA:62187]
synonym: "ventrobasal complex" EXACT [FMA:62187]
synonym: "ventrobasal nucleus" EXACT [FMA:62187]
xref: FMA:62187
xref: NIF_GrossAnatomy:birnlex_1116
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002597
name: principal sensory nucleus of trigeminal nerve
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1120-FMA_54533
def: "." [Wikipedia:Chief_sensory_nucleus]
subset: uberon_slim
synonym: "chief sensory nucleus" EXACT [FMA:54533]
synonym: "main sensory nucleus" EXACT [FMA:54533]
synonym: "main sensory nucleus of cranial nerve V" EXACT [FMA:54533]
synonym: "main sensory nucleus of cranial nerve v" EXACT []
synonym: "pontine nucleus" EXACT [GO:0021740]
synonym: "principal sensory trigeminal nucleus" EXACT [FMA:54533]
synonym: "principal trigeminal nucleus" EXACT [FMA:54533]
synonym: "superior trigeminal nucleus" EXACT [FMA:54533]
synonym: "superior trigeminal sensory nucleus" EXACT [FMA:54533]
synonym: "trigeminal nerve superior sensory nucleus" EXACT [FMA:54533]
xref: BTO:0003396
xref: FMA:54533
xref: NIF_GrossAnatomy:birnlex_1120
is_a: UBERON:0000126 ! cranial nerve nucleus
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001645 ! trigeminal nerve
[Term]
id: UBERON:0002598
name: paracentral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1121-FMA_83762
xref: FMA:83762
xref: NIF_GrossAnatomy:birnlex_1121
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002599
name: medial olfactory gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1127-FMA_74509
xref: FMA:74509
xref: NIF_GrossAnatomy:birnlex_1127
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002600
name: limbic lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1128-FMA_72719
def: "." [Wikipedia:Limbic_lobe]
subset: uberon_slim
synonym: "fornicate gyrus" EXACT [FMA:72719]
synonym: "grande lobe limbique of Broca" EXACT [FMA:72719]
synonym: "grande lobe limbique of broca" EXACT []
synonym: "limbic lobe (Carpenter)" EXACT [FMA:72719]
synonym: "limbic lobe (carpenter)" EXACT []
xref: FMA:72719
xref: NIF_GrossAnatomy:birnlex_1128
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0002601
name: fasciolar gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1129-FMA_61921
synonym: "retrosplenial gyrus of hippocampus" EXACT [FMA:61921]
xref: BTO:0002497
xref: FMA:61921
xref: NIF_GrossAnatomy:birnlex_1129
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002602
name: emboliform nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1135-FMA_72538
def: "." [Wikipedia:Emboliform_nucleus]
subset: uberon_slim
synonym: "anterior interposed nucleus" EXACT [FMA:72538]
synonym: "anterior interpositus nucleus" EXACT [FMA:72538]
xref: FMA:72538
xref: NIF_GrossAnatomy:birnlex_1135
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002603
name: paraterminal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1138-FMA_61919
def: "." [Wikipedia:Paraterminal_gyrus]
subset: uberon_slim
synonym: "precommissural hippocampus" EXACT [FMA:61919]
synonym: "subcallosal gyrus" EXACT [FMA:61919]
xref: FMA:61919
xref: NIF_GrossAnatomy:birnlex_1138
is_a: UBERON:0002665 ! supracallosal gyrus
[Term]
id: UBERON:0002604
name: ventral nucleus of lateral lemniscus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1140-FMA_72484
def: "." [Wikipedia:Ventral_nucleus_of_the_lateral_lemniscus]
subset: uberon_slim
synonym: "anterior nucleus of lateral lemniscus" EXACT [FMA:72484]
synonym: "ventral nucleus of the lateral lemniscus" EXACT [FMA:72484]
xref: FMA:72484
xref: NIF_GrossAnatomy:birnlex_1140
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002605
name: precentral operculum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1141-FMA_74888
xref: FMA:74888
xref: NIF_GrossAnatomy:birnlex_1141
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002606
name: neuropil
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1142-FMA_261269
def: "A dense intricate feltwork of interwoven fine glial processes, fibrils, synaptic terminals, axons, and dendrites interspersed among the nerve cells in the gray matter of the central nervous system (MSH). A region between neuronal cell bodies in the gray matter of the brain and spinal cord (i.e. the central nervous system). It consists of a dense tangle of axon terminals, dendrites and glial cell processes. It is where synaptic connections are formed between branches of axons and dendrites." [Wikipedia:Neuropil]
subset: uberon_slim
xref: FMA:261269
xref: ncithesaurus:Neuropil
xref: NIF_GrossAnatomy:birnlex_1142
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002607
name: superior rostral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1143-FMA_83766
xref: FMA:83766
xref: NIF_GrossAnatomy:birnlex_1143
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002608
name: caudal part of ventral lateral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1144-FMA_62194
synonym: "dorsal part of ventral lateral posterior nucleus (Jones)" EXACT [FMA:62194]
synonym: "dorsal part of ventral lateral posterior nucleus (jones)" EXACT []
synonym: "ventral lateral nucleus, caudal part" EXACT [FMA:62194]
synonym: "ventral lateral thalamic nucleus, caudal part" EXACT [FMA:62194]
xref: FMA:62194
xref: NIF_GrossAnatomy:birnlex_1144
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001925 ! ventral lateral nucleus
[Term]
id: UBERON:0002609
name: spinothalamic tract of midbrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1150-FMA_72463
xref: FMA:72463
xref: NIF_GrossAnatomy:birnlex_1150
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002610
name: cochlear nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1151-FMA_72240
def: "." [Wikipedia:Cochlear_nuclei]
subset: uberon_slim
synonym: "cochlear nuclei" EXACT [FMA:72240]
xref: FMA:72240
xref: ncithesaurus:Cochlear_Nuclei
xref: NIF_GrossAnatomy:birnlex_1151
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002611
name: node of ranvier
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1152-FMA_67368
def: "." [Wikipedia:Node_of_ranvier]
subset: uberon_slim
synonym: "ranvier node" EXACT [FMA:67368]
synonym: "ranvier's node" EXACT [FMA:67368]
xref: FMA:67368
xref: GO:0033268
xref: ncithesaurus:Node_of_Ranvier
xref: NIF_GrossAnatomy:birnlex_1152
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0002612
name: transverse orbital sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1155-FMA_83771
xref: FMA:83771
xref: NIF_GrossAnatomy:birnlex_1155
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002613
name: globose nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1158-FMA_72536
def: "." [Wikipedia:Globose_nucleus]
subset: uberon_slim
synonym: "posterior interposed nucleus" EXACT [FMA:72536]
synonym: "posterior interpositus nucleus" EXACT [FMA:72536]
xref: FMA:72536
xref: NIF_GrossAnatomy:birnlex_1158
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002614
name: medial part of ventral lateral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1159-FMA_62195
synonym: "ventral lateral nucleus, medial part" EXACT [FMA:62195]
synonym: "ventral medial nucleus" EXACT [FMA:62195]
xref: FMA:62195
xref: NIF_GrossAnatomy:birnlex_1159
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001925 ! ventral lateral nucleus
[Term]
id: UBERON:0002615
name: ventral tegmental decussation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1163-FMA_72452
synonym: "anterior tegmental decussation" EXACT [FMA:72452]
synonym: "decussation of Forel" EXACT [FMA:72452]
synonym: "decussation of forel" EXACT []
synonym: "ventral tegmental decussation of Forel" EXACT [FMA:72452]
synonym: "ventral tegmental decussation of forel" EXACT []
xref: FMA:72452
xref: NIF_GrossAnatomy:birnlex_1163
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002616
name: regional part of brain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1167-FMA_55676
synonym: "neuraxis segment" EXACT [FMA:55676]
synonym: "segment of brain" EXACT [NIF_GrossAnatomy:birnlex_1167]
xref: FMA:55676
xref: NIF_GrossAnatomy:birnlex_1167
is_a: UBERON:0000073 ! regional part of nervous system
intersection_of: UBERON:0000061 ! anatomical structure
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0002617
name: pars postrema of ventral lateral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1170-FMA_62196
synonym: "posterodorsal part of ventral lateral posterior nucleus (Jones)" EXACT [FMA:62196]
synonym: "posterodorsal part of ventral lateral posterior nucleus (jones)" EXACT []
synonym: "ventral lateral nucleus (pars postrema)" EXACT [FMA:62196]
xref: FMA:62196
xref: NIF_GrossAnatomy:birnlex_1170
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001925 ! ventral lateral nucleus
[Term]
id: UBERON:0002618
name: trochlear nerve fibers
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1172-FMA_71116
synonym: "central part of trochlear nerve" EXACT [FMA:71116]
synonym: "trochlear nerve fibers" EXACT [FMA:71116]
synonym: "trochlear nerve root" EXACT [FMA:71116]
xref: FMA:71116
xref: NIF_GrossAnatomy:birnlex_1172
is_a: UBERON:0002211 ! segment of nerve
[Term]
id: UBERON:0002619
name: regional part of cerebral cortex
alt_id: UBERON:0003208
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1173-FMA_68603
synonym: "cerebral cortex part" EXACT []
synonym: "cerebral cortical segment" EXACT [FMA:68603]
synonym: "regional organ part of cerebral cortex" EXACT [FMA:68603]
synonym: "segment of cerebral cortex" EXACT [NIF_GrossAnatomy:birnlex_1173]
xref: FMA:242193
xref: FMA:68603
xref: NIF_GrossAnatomy:birnlex_1173
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0000956 ! cerebral cortex
[Term]
id: UBERON:0002620
name: tuber cinereum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1189-FMA_62327
def: "." [Wikipedia:Tuber_cinereum]
subset: uberon_slim
xref: FMA:62327
xref: ncithesaurus:Tuber_Cinereum
xref: NIF_GrossAnatomy:birnlex_1189
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002621
name: regional part of cochlear nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1195-FMA_83952
synonym: "cochlear nuclear complex segment" EXACT [FMA:83952]
synonym: "segment of cochlear nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1195]
xref: FMA:83952
xref: NIF_GrossAnatomy:birnlex_1195
is_a: UBERON:0002678 ! regional part of medulla oblongata
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002610 ! cochlear nuclear complex
[Term]
id: UBERON:0002622
name: preoptic periventricular nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1201-FMA_62324
synonym: "periventricular preoptic nucleus" EXACT [FMA:62324]
synonym: "preoptic periventricular hypothalamic nucleus" EXACT [FMA:62324]
xref: FMA:62324
xref: NIF_GrossAnatomy:birnlex_1201
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0001928 ! preoptic area
[Term]
id: UBERON:0002623
name: cerebral peduncle
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1202-FMA_62394
def: "." [Wikipedia:Cerebral_peduncle]
subset: uberon_slim
synonym: "cerebral peduncle" EXACT [FMA:62394]
xref: EFO:0001987
xref: FMA:62394
xref: ncithesaurus:Cerebral_Peduncle
xref: NIF_GrossAnatomy:birnlex_1202
is_a: UBERON:0002316 ! white matter of neuraxis
relationship: has_part UBERON:0001943 ! midbrain tegmentum
relationship: has_part UBERON:0002038 ! substantia nigra
[Term]
id: UBERON:0002624
name: orbital part of inferior frontal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1207-FMA_61982
synonym: "inferior frontal gyrus, orbital part" EXACT [FMA:61982]
xref: FMA:61982
xref: NIF_GrossAnatomy:birnlex_1207
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002625
name: median preoptic nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1208-FMA_62323
def: "." [Wikipedia:Median_preoptic_nucleus]
subset: uberon_slim
xref: FMA:62323
xref: NIF_GrossAnatomy:birnlex_1208
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0001928 ! preoptic area
[Term]
id: UBERON:0002626
name: head of caudate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1212-FMA_61852
synonym: "caput (caudatus)" EXACT [FMA:61852]
synonym: "caudate nuclear head" EXACT [FMA:61852]
xref: FMA:61852
xref: NIF_GrossAnatomy:birnlex_1212
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001873 ! caudate nucleus
[Term]
id: UBERON:0002627
name: capsule of medial geniculate body
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1214-FMA_62049
synonym: "medial geniculate body capsule" EXACT [FMA:62049]
xref: FMA:62049
xref: NIF_GrossAnatomy:birnlex_1214
is_a: UBERON:0002316 ! white matter of neuraxis
relationship: part_of UBERON:0001927 ! medial geniculate body
[Term]
id: UBERON:0002628
name: tail of caudate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1215-FMA_61854
synonym: "caudate nuclear tail" EXACT [FMA:61854]
xref: FMA:61854
xref: NIF_GrossAnatomy:birnlex_1215
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001873 ! caudate nucleus
[Term]
id: UBERON:0002629
name: triangular part of inferior frontal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1216-FMA_61980
xref: FMA:61980
xref: NIF_GrossAnatomy:birnlex_1216
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002630
name: body of caudate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1217-FMA_61853
synonym: "caudate nuclear body" EXACT [FMA:61853]
synonym: "corpus (caudatus)" EXACT [FMA:61853]
xref: FMA:61853
xref: NIF_GrossAnatomy:birnlex_1217
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001873 ! caudate nucleus
[Term]
id: UBERON:0002631
name: cerebral crus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1218-FMA_72464
def: "." [Wikipedia:Cerebral_crus]
subset: uberon_slim
synonym: "cerebral peduncle (clinical definition)" EXACT [FMA:72464]
xref: FMA:72464
xref: NIF_GrossAnatomy:birnlex_1218
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002632
name: medial part of medial mammillary nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1220-FMA_62345
synonym: "medial mammillary nucleus (Carpenter)" EXACT [FMA:62345]
synonym: "medial mammillary nucleus (carpenter)" EXACT []
synonym: "medial mammillary nucleus, medial part" EXACT [FMA:62345]
synonym: "medial mammillary nucleus, median part" EXACT [FMA:62345]
synonym: "medial subdivision of medial mammillary nucleus" EXACT [FMA:62345]
xref: FMA:62345
xref: NIF_GrossAnatomy:birnlex_1220
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002633
name: motor nucleus of trigeminal nerve
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1222-FMA_54562
synonym: "motor nucleus of cranial nerve V" EXACT [FMA:54562]
synonym: "motor nucleus of cranial nerve v" EXACT []
synonym: "motor nucleus of trigeminal nerve" EXACT [FMA:54562]
xref: FMA:54562
xref: NIF_GrossAnatomy:birnlex_1222
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002634
name: anterior nucleus of hypothalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1226-FMA_62319
def: "." [Wikipedia:Anterior_hypothalamic_nucleus]
subset: uberon_slim
synonym: "anterior hypothalamic area" EXACT [FMA:62319]
synonym: "anterior hypothalamic nucleus" EXACT [FMA:62319]
synonym: "fundamental gray substance" EXACT [FMA:62319]
synonym: "parvocellular nucleus of hypothalamus" EXACT [FMA:62319]
xref: BTO:0002450
xref: FMA:62319
xref: NIF_GrossAnatomy:birnlex_1226
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001928 ! preoptic area
[Term]
id: UBERON:0002635
name: regional part of midbrain tegmentum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1227-FMA_62399
synonym: "midbrain tegmentum segment" EXACT [FMA:62399]
synonym: "segment of midbrain tegmentum" EXACT [NIF_GrossAnatomy:birnlex_1227]
xref: FMA:62399
xref: NIF_GrossAnatomy:birnlex_1227
is_a: UBERON:0002950 ! regional part of midbrain
[Term]
id: UBERON:0002636
name: lateral pulvinar nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1228-FMA_62181
synonym: "lateral pulvinar nucleus of thalamus" EXACT [FMA:62181]
xref: FMA:62181
xref: NIF_GrossAnatomy:birnlex_1228
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002637
name: ventral anterior nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1232-FMA_62184
def: "." [Wikipedia:Ventral_anterior_nucleus]
subset: uberon_slim
synonym: "ventral anterior nucleus of thalamus" EXACT [FMA:62184]
synonym: "ventral anterior thalamic nucleus" EXACT [FMA:62184]
xref: BTO:0002468
xref: FMA:62184
xref: NIF_GrossAnatomy:birnlex_1232
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002638
name: medial pulvinar nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1233-FMA_62182
xref: FMA:62182
xref: NIF_GrossAnatomy:birnlex_1233
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002639
name: midbrain reticular formation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1235-FMA_62406
synonym: "reticular formation of midbrain" EXACT [FMA:62406]
synonym: "tegmental reticular formation" EXACT [FMA:62406]
xref: FMA:62406
xref: NIF_GrossAnatomy:birnlex_1235
is_a: UBERON:0002275 ! reticular formation
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
intersection_of: UBERON:0002275 ! reticular formation
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: has_part UBERON:0002142 ! pedunculopontine tegmental nucleus
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002640
name: cuneocerebellar tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1238-FMA_72637
def: "." [Wikipedia:Cuneocerebellar_tract]
subset: uberon_slim
xref: FMA:72637
xref: NIF_GrossAnatomy:birnlex_1238
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002641
name: oral pulvinar nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1239-FMA_62180
synonym: "anterior pulvinar nucleus" EXACT [FMA:62180]
synonym: "oral nuclear group of pulvinar" EXACT [FMA:62180]
synonym: "oral part of pulvinar" EXACT [FMA:62180]
synonym: "oral portion of pulvinar" EXACT [FMA:62180]
xref: FMA:62180
xref: NIF_GrossAnatomy:birnlex_1239
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002642
name: cuneate fasciculus of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1242-FMA_72623
xref: FMA:72623
xref: NIF_GrossAnatomy:birnlex_1242
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002643
name: decussation of medial lemniscus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1245-FMA_72622
def: "." [Wikipedia:Sensory_decussation]
subset: uberon_slim
synonym: "decussation of lemnisci" EXACT [FMA:72622]
synonym: "decussation of lemniscus" EXACT [FMA:72622]
synonym: "decussation of medial lemnisci" EXACT [FMA:72622]
synonym: "medial lemniscus decussation" EXACT [FMA:72622]
synonym: "medullary sensory decussation" EXACT [FMA:72622]
synonym: "sensory decussation" EXACT [FMA:72622]
xref: FMA:72622
xref: NIF_GrossAnatomy:birnlex_1245
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002644
name: intermediate orbital gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1247-FMA_80183
xref: FMA:80183
xref: NIF_GrossAnatomy:birnlex_1247
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002645
name: densocellular part of medial dorsal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1255-FMA_62163
xref: FMA:62163
xref: NIF_GrossAnatomy:birnlex_1255
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002646
name: dorsal longitudinal fasciculus of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1257-FMA_72617
xref: FMA:72617
xref: NIF_GrossAnatomy:birnlex_1257
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus
intersection_of: part_of UBERON:0000958 ! medulla
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002647
name: magnocellular part of medial dorsal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1262-FMA_62161
synonym: "dorsomedial thalamic nucleus, magnocellular part" EXACT [FMA:62161]
synonym: "magnocellular mediodorsal nucleus" EXACT [FMA:62161]
synonym: "magnocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62161]
synonym: "magnocellular part of dorsomedial nucleus" EXACT [FMA:62161]
xref: FMA:62161
xref: NIF_GrossAnatomy:birnlex_1262
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002648
name: anterior median eminence
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1264-FMA_74870
xref: FMA:74870
xref: NIF_GrossAnatomy:birnlex_1264
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002649
name: dorsolateral fasciculus of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1267-FMA_72616
def: "." [Wikipedia:Lissauer's_tract]
subset: uberon_slim
synonym: "dorsolateral tract" EXACT [FMA:72616]
synonym: "lissauer's tract" EXACT [FMA:72616]
synonym: "posterolateral fasciculus" EXACT [FMA:72616]
synonym: "posterolateral tract" EXACT [FMA:72616]
synonym: "tract of Lissauer" EXACT [FMA:72616]
synonym: "tract of lissauer" EXACT []
synonym: "zone of Lissauer" EXACT [FMA:72616]
synonym: "zone of lissauer" EXACT []
xref: FMA:72616
xref: ncithesaurus:Tract_of_Lissauer
xref: NIF_GrossAnatomy:birnlex_1267
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002650
name: paralaminar part of medial dorsal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1276-FMA_62160
synonym: "dorsomedial thalamic nucleus, paralaminar part" EXACT [FMA:62160]
synonym: "paralaminar part of dorsomedial nucleus" EXACT [FMA:62160]
synonym: "paralaminar part of medial dorsal nucleus of thalamus" EXACT [FMA:62160]
synonym: "pars paralaminaris of medial dorsal nucleus of thalamus" EXACT [FMA:62160]
synonym: "ventral mediodorsal nucleus" EXACT [FMA:62160]
xref: FMA:62160
xref: NIF_GrossAnatomy:birnlex_1276
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002651
name: anterior horn of lateral ventricle
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1279-FMA_74520
def: "." [Wikipedia:Anterior_horn_of_lateral_ventricle]
subset: uberon_slim
synonym: "anterior horn of lateral ventricle" EXACT [FMA:74520]
xref: FMA:74520
xref: NIF_GrossAnatomy:birnlex_1279
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0002652
name: posterior median eminence
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1280-FMA_74875
xref: FMA:74875
xref: NIF_GrossAnatomy:birnlex_1280
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002653
name: gracile fasciculus of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1282-FMA_72624
synonym: "column of Goll" EXACT [FMA:72624]
synonym: "column of goll" EXACT []
synonym: "fasciculus of Goll" EXACT [FMA:72624]
synonym: "fasciculus of goll" EXACT []
synonym: "goll's tract" EXACT [FMA:72624]
synonym: "gracile fascicle of medulla" EXACT [FMA:72624]
synonym: "medulla segment of fasciculus gracilis" EXACT [FMA:72624]
synonym: "medulla segment of gracile fasciculus" EXACT [FMA:72624]
synonym: "tract of Gall" EXACT [FMA:72624]
synonym: "tract of gall" EXACT []
xref: FMA:72624
xref: NIF_GrossAnatomy:birnlex_1282
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002654
name: parvicellular part of medial dorsal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1283-FMA_62162
synonym: "dorsomedial thalamic nucleus, parvicellular part" EXACT [FMA:62162]
synonym: "lateral mediodorsal nucleus" EXACT [FMA:62162]
synonym: "lateral nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162]
synonym: "parvicellular part of dorsomedial nucleus" EXACT [FMA:62162]
synonym: "parvocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162]
synonym: "principal division of ventral anterior nucleus of thalamus" EXACT [FMA:62162]
xref: FMA:62162
xref: NIF_GrossAnatomy:birnlex_1283
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002655
name: body of lateral ventricle
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1287-FMA_83703
def: "." [Wikipedia:Body_of_lateral_ventricle]
subset: uberon_slim
synonym: "central part of lateral ventricle" EXACT [FMA:83703]
synonym: "lateral ventricular body" EXACT [FMA:83703]
xref: FMA:83703
xref: NIF_GrossAnatomy:birnlex_1287
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
relationship: part_of UBERON:0002285 ! lateral ventricle
[Term]
id: UBERON:0002656
name: periamygdaloid area
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1291-FMA_62485
synonym: "para-amygdaloid cortex" EXACT [FMA:62485]
synonym: "periamygdaloid cortex" EXACT [FMA:62485]
synonym: "periamygdaloid region" EXACT [FMA:62485]
synonym: "semilunar gyrus" EXACT [FMA:62485]
synonym: "ventral cortical nucleus of amygdala" EXACT [FMA:62485]
xref: FMA:62485
xref: NIF_GrossAnatomy:birnlex_1291
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002657
name: posterior parahippocampal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1295-FMA_67966
synonym: "parahippocampal gyrus (Amaral)" EXACT [FMA:67966]
synonym: "parahippocampal gyrus (amaral)" EXACT []
xref: FMA:67966
xref: NIF_GrossAnatomy:birnlex_1295
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002658
name: medial lemniscus of midbrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1296-FMA_72461
xref: FMA:72461
xref: NIF_GrossAnatomy:birnlex_1296
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003002 ! medial lemniscus
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
intersection_of: UBERON:0003002 ! medial lemniscus
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002659
name: superior medullary velum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1300-FMA_74508
def: "." [Wikipedia:Superior_medullary_velum]
subset: uberon_slim
synonym: "anterior medullary velum" EXACT [FMA:74508]
xref: FMA:74508
xref: NIF_GrossAnatomy:birnlex_1300
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002660
name: medial longitudinal fasciculus of midbrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1302-FMA_72454
xref: FMA:72454
xref: NIF_GrossAnatomy:birnlex_1302
is_a: UBERON:0002309 ! medial longitudinal fasciculus
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
intersection_of: UBERON:0002309 ! medial longitudinal fasciculus
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002661
name: superior frontal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1303-FMA_61857
def: "." [Wikipedia:Superior_frontal_gyrus]
subset: uberon_slim
synonym: "marginal gyrus" EXACT [FMA:61857]
synonym: "superior frontal convolution" EXACT [FMA:61857]
xref: EFO:0001991
xref: FMA:61857
xref: ncithesaurus:Superior_Frontal_Convolution
xref: NIF_GrossAnatomy:birnlex_1303
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0001870 ! frontal lobe
[Term]
id: UBERON:0002662
name: medial pes lemniscus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1310-FMA_72460
synonym: "superficial pes lemniscus" EXACT [FMA:72460]
xref: FMA:72460
xref: NIF_GrossAnatomy:birnlex_1310
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002663
name: septal nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1313-FMA_61845
def: "." [Wikipedia:Septal_nuclei]
subset: uberon_slim
synonym: "parolfactory nuclei" EXACT [FMA:61845]
synonym: "septal nuclei" EXACT [FMA:61845]
xref: FMA:61845
xref: NIF_GrossAnatomy:birnlex_1313
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002664
name: lateral part of medial mammillary nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1314-FMA_62346
synonym: "intercalated mammillary nucleus" EXACT [FMA:62346]
synonym: "intermediate mammillary nucleus" EXACT [FMA:62346]
synonym: "lateral mammillary nucleus (Gagel)" EXACT [FMA:62346]
synonym: "lateral mammillary nucleus (gagel)" EXACT []
synonym: "lateral subdivision of medial mammillary nucleus" EXACT [FMA:62346]
synonym: "medial mammillary nucleus, lateral part" EXACT [FMA:62346]
xref: FMA:62346
xref: NIF_GrossAnatomy:birnlex_1314
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002665
name: supracallosal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1316-FMA_61920
def: "." [Wikipedia:Supracallosal_gyrus]
subset: uberon_slim
synonym: "supracommissural hippocampal rudiment" EXACT [FMA:61920]
synonym: "supracommissural hippocampus" EXACT [FMA:61920]
xref: FMA:61920
xref: NIF_GrossAnatomy:birnlex_1316
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002666
name: mesencephalic tract of trigeminal nerve
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1318-FMA_72489
synonym: "mesencephalic root of V" EXACT [FMA:72489]
synonym: "mesencephalic root of v" EXACT []
synonym: "mesencephalic trigeminal tract" EXACT [FMA:72489]
xref: FMA:72489
xref: NIF_GrossAnatomy:birnlex_1318
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002667
name: lateral septal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1321-FMA_61878
synonym: "lateral parolfactory nucleus" EXACT [FMA:61878]
xref: FMA:61878
xref: NIF_GrossAnatomy:birnlex_1321
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002668
name: oculomotor nerve fibers
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1323-FMA_72457
synonym: "oculomotor nerve fibers" EXACT [FMA:72457]
synonym: "root of oculomotor nerve" EXACT [FMA:72457]
xref: FMA:72457
xref: NIF_GrossAnatomy:birnlex_1323
is_a: UBERON:0002211 ! segment of nerve
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002669
name: anterior horizontal limb of lateral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1327-FMA_83760
synonym: "anterior branch of lateral sulcus" EXACT [FMA:83760]
synonym: "anterior horizontal limb of lateral fissure" EXACT [FMA:83760]
synonym: "anterior horizontal ramus of lateral fissure" EXACT [FMA:83760]
synonym: "anterior ramus of lateral cerebral sulcus" EXACT [FMA:83760]
synonym: "horizontal limb of lateral fissure" EXACT [FMA:83760]
synonym: "horizontal ramus of Sylvian fissure" EXACT [FMA:83760]
synonym: "horizontal ramus of sylvian fissure" EXACT []
xref: FMA:83760
xref: NIF_GrossAnatomy:birnlex_1327
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002670
name: anterior ascending limb of lateral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1330-FMA_83759
synonym: "anterior ascending limb of lateral fissure" EXACT [FMA:83759]
synonym: "anterior ascending ramus of lateral sulcus" EXACT [FMA:83759]
synonym: "ascending branch of lateral sulcus" EXACT [FMA:83759]
synonym: "ascending ramus of lateral cerebral sulcus" EXACT [FMA:83759]
synonym: "ascending ramus of Sylvian fissure" EXACT [FMA:83759]
synonym: "ascending ramus of sylvian fissure" EXACT []
synonym: "middle ramus of lateral fissure" EXACT [FMA:83759]
synonym: "superior branch of lateral fissure" EXACT [FMA:83759]
xref: FMA:83759
xref: NIF_GrossAnatomy:birnlex_1330
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002671
name: pallidotegmental fasciculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1331-FMA_72458
synonym: "pallidotegmental tract" EXACT [FMA:72458]
xref: FMA:72458
xref: NIF_GrossAnatomy:birnlex_1331
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002672
name: anterior subcentral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1332-FMA_83765
xref: FMA:83765
xref: NIF_GrossAnatomy:birnlex_1332
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002673
name: vestibular nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1337-FMA_72239
def: "." [Wikipedia:Vestibular_nuclei]
subset: uberon_slim
synonym: "vestibular nuclei" EXACT [FMA:72239]
synonym: "vestibular nuclei in medulla oblongata" EXACT [FMA:72239]
xref: FMA:72239
xref: NIF_GrossAnatomy:birnlex_1337
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002674
name: trochlear nerve root
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1341-FMA_71116
synonym: "central part of trochlear nerve" EXACT [FMA:71116]
synonym: "trochlear nerve fibers" EXACT [FMA:71116]
synonym: "trochlear nerve root" EXACT [FMA:71116]
xref: FMA:71116
xref: NIF_GrossAnatomy:birnlex_1341
is_a: UBERON:0002211 ! segment of nerve
[Term]
id: UBERON:0002675
name: diagonal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1344-FMA_83758
xref: FMA:83758
xref: NIF_GrossAnatomy:birnlex_1344
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002676
name: ventral supraoptic decussation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1347-FMA_62052
def: "." [Wikipedia:Ventral_supraoptic_decussation]
subset: uberon_slim
synonym: "commissure of Gudden" EXACT [FMA:62052]
synonym: "commissure of gudden" EXACT []
synonym: "gudden commissure" EXACT [FMA:62052]
synonym: "gudden's commissure" EXACT [FMA:62052]
synonym: "supraoptic commissures, ventral" EXACT [FMA:62052]
synonym: "ventral supra-optic commissure" EXACT [FMA:62052]
synonym: "ventral supraoptic commissure (of Meynert)" EXACT [FMA:62052]
synonym: "ventral supraoptic commissure (of meynert)" EXACT []
synonym: "ventral supraoptic decussation of Gudden" EXACT [FMA:62052]
synonym: "ventral supraoptic decussation of gudden" EXACT []
synonym: "von Gudden's commissure" EXACT [FMA:62052]
synonym: "von gudden's commissure" EXACT []
xref: FMA:62052
xref: NIF_GrossAnatomy:birnlex_1347
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002677
name: regional part of medullary raphe nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1349-FMA_83951
synonym: "medullary raphe nuclear complex segment" EXACT [FMA:83951]
synonym: "segment of medullary raphe nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1349]
xref: FMA:83951
xref: NIF_GrossAnatomy:birnlex_1349
is_a: UBERON:0002678 ! regional part of medulla oblongata
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002692 ! medullary raphe nuclear complex
[Term]
id: UBERON:0002678
name: regional part of medulla oblongata
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1355-FMA_71011
synonym: "medullary oblongata segment" EXACT [FMA:71011]
synonym: "segment of medulla oblongata" EXACT [NIF_GrossAnatomy:birnlex_1355]
xref: FMA:71011
xref: NIF_GrossAnatomy:birnlex_1355
is_a: UBERON:0001892 ! rhombomere
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002679
name: anterodorsal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1358-FMA_62141
synonym: "anterodorsal nucleus of thalamus" EXACT [FMA:62141]
synonym: "anterodorsal thalamic nucleus" EXACT [FMA:62141]
xref: FMA:62141
xref: NIF_GrossAnatomy:birnlex_1358
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002680
name: regional part of metencephalon
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1361-FMA_67942
synonym: "metencephalon subdivision" EXACT [FMA:67942]
synonym: "segment of metencephalon" EXACT [NIF_GrossAnatomy:birnlex_1361]
xref: FMA:67942
xref: NIF_GrossAnatomy:birnlex_1361
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0001892 ! rhombomere
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001895 ! metencephalon
[Term]
id: UBERON:0002681
name: anteromedial nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1365-FMA_62142
synonym: "anteromedial nucleus of thalamus" EXACT [FMA:62142]
synonym: "anteromedial thalamic nucleus" EXACT [FMA:62142]
xref: FMA:62142
xref: NIF_GrossAnatomy:birnlex_1365
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002682
name: abducens nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1366-FMA_54504
def: "." [Wikipedia:Abducens_nucleus]
subset: uberon_slim
synonym: "abducens nerve nucleus" EXACT [FMA:54504]
synonym: "abducent nucleus" EXACT [FMA:54504]
synonym: "nucleus of abducens nerve" EXACT [FMA:54504]
synonym: "nucleus of abducens nerve (VI)" EXACT [FMA:54504]
synonym: "nucleus of abducens nerve (vi)" EXACT []
synonym: "sixth cranial nerve nucleus" EXACT [FMA:54504]
xref: FMA:54504
xref: ncithesaurus:Abducens_Nucleus
xref: NIF_GrossAnatomy:birnlex_1366
xref: ZFA:0000713
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002683
name: rhinal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1368-FMA_83746
def: "." [Wikipedia:Rhinal_sulcus]
subset: uberon_slim
synonym: "rhinal fissure" EXACT [FMA:83746]
xref: FMA:83746
xref: NIF_GrossAnatomy:birnlex_1368
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002684
name: nucleus raphe obscurus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1369-FMA_72585
def: "." [Wikipedia:Nucleus_raphe_obscurus]
subset: uberon_slim
synonym: "obscurus raphe nucleus" EXACT [FMA:72585]
synonym: "raphe obscurus nucleus" EXACT [FMA:72585]
xref: FMA:72585
xref: NIF_GrossAnatomy:birnlex_1369
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002685
name: anteroventral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1372-FMA_62143
synonym: "anterior ventral nucleus of thalamus" EXACT [FMA:62143]
synonym: "anteroprincipal thalamic nucleus" EXACT [FMA:62143]
synonym: "anteroventral nucleus of thalamus" EXACT [FMA:62143]
synonym: "anteroventral thalamic nucleus" EXACT [FMA:62143]
xref: FMA:62143
xref: NIF_GrossAnatomy:birnlex_1372
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002686
name: angular gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1376-FMA_61898
def: "." [Wikipedia:Angular_gyrus]
subset: uberon_slim
synonym: "middle part of inferior parietal lobule" EXACT [FMA:61898]
synonym: "preoccipital gyrus" EXACT [FMA:61898]
xref: FMA:61898
xref: ncithesaurus:Angular_Gyrus
xref: NIF_GrossAnatomy:birnlex_1376
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0001872 ! parietal lobe
[Term]
id: UBERON:0002687
name: area x
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1379-FMA_62198
synonym: "anteromedial part of ventral lateral posterior nucleus (Jones)" EXACT [FMA:62198]
synonym: "anteromedial part of ventral lateral posterior nucleus (jones)" EXACT []
xref: FMA:62198
xref: NIF_GrossAnatomy:birnlex_1379
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001925 ! ventral lateral nucleus
[Term]
id: UBERON:0002688
name: supramarginal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1381-FMA_61897
def: "." [Wikipedia:Supramarginal_gyrus]
subset: uberon_slim
synonym: "anterior part of inferior parietal lobule" EXACT [FMA:61897]
synonym: "inferior parietal lobule (Krieg)" EXACT [FMA:61897]
synonym: "inferior parietal lobule (krieg)" EXACT []
xref: FMA:61897
xref: ncithesaurus:Supramarginal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1381
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0001872 ! parietal lobe
[Term]
id: UBERON:0002689
name: supraoptic crest
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1400-FMA_62315
synonym: "vascular organ of lamina terminalis" EXACT [FMA:62315]
xref: FMA:62315
xref: NIF_GrossAnatomy:birnlex_1400
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002690
name: anteroventral periventricular nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1401-FMA_62314
xref: FMA:62314
xref: NIF_GrossAnatomy:birnlex_1401
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002691
name: ventral tegmental area
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1415-FMA_72438
def: "." [Wikipedia:Ventral_tegmental_area]
subset: uberon_slim
synonym: "ventral tegmental area of Tsai" EXACT [FMA:72438]
synonym: "ventral tegmental area of tsai" EXACT []
synonym: "ventral tegmental nucleus (Tsai)" EXACT [FMA:72438]
synonym: "ventral tegmental nucleus (tsai)" EXACT []
synonym: "ventral tegmental nucleus of Tsai" EXACT [FMA:72438]
synonym: "ventral tegmental nucleus of tsai" EXACT []
xref: EFO:0001935
xref: FMA:72438
xref: NIF_GrossAnatomy:birnlex_1415
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002692
name: medullary raphe nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1420-FMA_68874
synonym: "raphe nuclei of medulla" EXACT [FMA:68874]
synonym: "raphe of medulla oblongata" EXACT [FMA:68874]
xref: FMA:68874
xref: NIF_GrossAnatomy:birnlex_1420
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002693
name: occipitotemporal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1422-FMA_74518
synonym: "inferior temporal fissure" EXACT [FMA:74518]
synonym: "inferior temporal sulcus (Roberts)" EXACT [FMA:74518]
synonym: "inferior temporal sulcus (roberts)" EXACT []
synonym: "inferior temporal sulcus (Szikla)" EXACT [FMA:74518]
synonym: "inferior temporal sulcus (szikla)" EXACT []
synonym: "inferior temporal sulcus-2" EXACT [FMA:74518]
synonym: "occipito-temporal sulcus" EXACT [FMA:74518]
synonym: "third temporal sulcus" EXACT [FMA:74518]
xref: FMA:74518
xref: NIF_GrossAnatomy:birnlex_1422
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002694
name: anterior hypothalamic commissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1424-FMA_62053
synonym: "anterior hypothalamic commissure (Ganser)" EXACT [FMA:62053]
synonym: "anterior hypothalamic commissure (ganser)" EXACT []
synonym: "anterior hypothalamic decussation of Ganser" EXACT [FMA:62053]
synonym: "anterior hypothalamic decussation of ganser" EXACT []
xref: FMA:62053
xref: NIF_GrossAnatomy:birnlex_1424
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002695
name: parieto-occipital sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1428-FMA_83754
def: "." [Wikipedia:Parieto-occipital_sulcus]
subset: uberon_slim
synonym: "parieto-occipital fissure" EXACT [FMA:83754]
synonym: "parieto-occipital incisure" EXACT [FMA:83754]
synonym: "parietooccipital sulcus" EXACT [FMA:83754]
xref: FMA:83754
xref: ncithesaurus:Parieto-occipital_Fissure
xref: NIF_GrossAnatomy:birnlex_1428
xref: OpenCyc:Mx4rv7l_DJwpEbGdrcN5Y29ycA
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002696
name: cuneiform nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1430-FMA_72427
synonym: "parabigeminal area (Mai)" EXACT [FMA:72427]
synonym: "parabigeminal area (mai)" EXACT []
xref: FMA:72427
xref: NIF_GrossAnatomy:birnlex_1430
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002697
name: dorsal supraoptic decussation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1433-FMA_62051
synonym: "commissure of Meynert" EXACT [FMA:62051]
synonym: "commissure of meynert" EXACT []
synonym: "dorsal supra-optic commissure" EXACT [FMA:62051]
synonym: "dorsal supraoptic commissure" EXACT [FMA:62051]
synonym: "dorsal supraoptic commissure (of Ganser)" EXACT [FMA:62051]
synonym: "dorsal supraoptic commissure (of ganser)" EXACT []
synonym: "dorsal supraoptic decussation of Meynert" EXACT [FMA:62051]
synonym: "dorsal supraoptic decussation of meynert" EXACT []
synonym: "ganser's commissure" EXACT [FMA:62051]
synonym: "meynert's commissure" EXACT [FMA:62051]
synonym: "supraoptic commissure of Meynert" EXACT [FMA:62051]
synonym: "supraoptic commissure of meynert" EXACT []
synonym: "supraoptic commissures, dorsal" EXACT [FMA:62051]
xref: FMA:62051
xref: NIF_GrossAnatomy:birnlex_1433
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002698
name: preoccipital notch
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1436-FMA_83739
synonym: "occipital notch" EXACT [FMA:83739]
synonym: "preoccipital incisura" EXACT [FMA:83739]
synonym: "preoccipital incisure" EXACT [FMA:83739]
xref: FMA:83739
xref: NIF_GrossAnatomy:birnlex_1436
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002699
name: supraopticohypophysial tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1440-FMA_62054
synonym: "supra-opticohypophysial tract" EXACT [FMA:62054]
synonym: "supraopticohypophyseal tract" EXACT [FMA:62054]
xref: FMA:62054
xref: NIF_GrossAnatomy:birnlex_1440
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002700
name: subcuneiform nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1441-FMA_72428
synonym: "subcuneiform area of midbrain" EXACT [FMA:72428]
xref: FMA:72428
xref: NIF_GrossAnatomy:birnlex_1441
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002701
name: anterior median oculomotor nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1445-FMA_72423
synonym: "anterior median nucleus of oculomotor nerve" EXACT [FMA:72423]
xref: FMA:72423
xref: NIF_GrossAnatomy:birnlex_1445
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002702
name: middle frontal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1451-FMA_61859
def: "." [Wikipedia:Middle_frontal_gyrus]
subset: uberon_slim
synonym: "intermediate frontal gyrus" EXACT [FMA:61859]
synonym: "medial frontal gyrus" EXACT [FMA:61859]
xref: FMA:61859
xref: ncithesaurus:Middle_Frontal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1451
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0001870 ! frontal lobe
[Term]
id: UBERON:0002703
name: precentral gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1455-FMA_61894
def: "." [Wikipedia:Precentral_gyrus]
subset: uberon_slim
synonym: "precentral convolution" EXACT [FMA:61894]
synonym: "prerolandic gyrus" EXACT [FMA:61894]
xref: EFO:0001373
xref: FMA:61894
xref: ncithesaurus:Precentral_Gyrus
xref: NIF_GrossAnatomy:birnlex_1455
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0001870 ! frontal lobe
[Term]
id: UBERON:0002704
name: metathalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1461-FMA_62023
def: "." [Wikipedia:Metathalamus]
subset: uberon_slim
synonym: "geniculate group of the dorsal thalamus" EXACT [FMA:62023]
xref: FMA:62023
xref: NIF_GrossAnatomy:birnlex_1461
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002705
name: midline nuclear group
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1462-FMA_62020
def: "." [Wikipedia:Midline_nuclear_group]
subset: uberon_slim
synonym: "median nuclei of thalamus" EXACT [FMA:62020]
synonym: "midline nuclear group" EXACT [FMA:62020]
synonym: "midline nuclei of thalamus" EXACT [FMA:62020]
synonym: "periventricular nuclei of thalamus" EXACT [FMA:62020]
xref: FMA:62020
xref: NIF_GrossAnatomy:birnlex_1462
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002706
name: posterior nucleus of hypothalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1463-FMA_62350
synonym: "posterior hypothalamic area" EXACT [FMA:62350]
synonym: "posterior hypothalamic nucleus" EXACT [FMA:62350]
xref: BTO:0002461
xref: FMA:62350
xref: NIF_GrossAnatomy:birnlex_1463
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002707
name: pyramidal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1464-FMA_72634
def: "." [Wikipedia:Pyramidal_tract]
subset: uberon_slim
xref: FMA:72634
xref: NIF_GrossAnatomy:birnlex_1464
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002708
name: posterior periventricular nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1466-FMA_62349
synonym: "periventricular nucleus, posterior subdivision" EXACT [FMA:62349]
synonym: "posterior periventricular nucleus" EXACT [FMA:62349]
xref: BTO:0002479
xref: FMA:62349
xref: NIF_GrossAnatomy:birnlex_1466
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002709
name: posterior nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1467-FMA_62024
synonym: "posterior complex of thalamus" EXACT [FMA:62024]
synonym: "posterior nuclear complex" EXACT [FMA:62024]
synonym: "posterior nuclear complex of thalamus" EXACT [FMA:62024]
synonym: "posterior thalamic nuclear group" EXACT [FMA:62024]
xref: BTO:0002462
xref: FMA:62024
xref: NIF_GrossAnatomy:birnlex_1467
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002710
name: cingulate sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1468-FMA_83748
def: "." [Wikipedia:Cingulate_sulcus]
subset: uberon_slim
synonym: "calloso-marginal sulcus" EXACT [FMA:83748]
synonym: "callosomarginal fissure" EXACT [FMA:83748]
synonym: "callosomarginal sulcus" EXACT [FMA:83748]
synonym: "cingulate fissure" EXACT [FMA:83748]
xref: FMA:83748
xref: NIF_GrossAnatomy:birnlex_1468
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002711
name: nucleus of posterior commissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1470-FMA_68463
synonym: "posterior commissure nucleus" EXACT [FMA:68463]
xref: FMA:68463
xref: NIF_GrossAnatomy:birnlex_1470
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002712
name: premammillary nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1473-FMA_62348
synonym: "premammillary nuclei" EXACT [FMA:62348]
xref: FMA:62348
xref: NIF_GrossAnatomy:birnlex_1473
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002713
name: circular sulcus of insula
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1475-FMA_83753
synonym: "circular fissure" EXACT [FMA:83753]
synonym: "circular sulcus (of Reil)" EXACT [FMA:83753]
synonym: "circular sulcus (of reil)" EXACT []
synonym: "circuminsular sulcus" EXACT [FMA:83753]
synonym: "limiting fissure" EXACT [FMA:83753]
synonym: "marginal sulcus of insula" EXACT [FMA:83753]
xref: FMA:83753
xref: NIF_GrossAnatomy:birnlex_1475
is_a: UBERON:0002912 ! marginal sulcus
intersection_of: UBERON:0002912 ! marginal sulcus
intersection_of: part_of UBERON:0002022 ! insula
[Term]
id: UBERON:0002714
name: rubrospinal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1476-FMA_72640
def: "long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the red nucleus of the midbrain towards target cells in the spinal cord[GO]." [Wikipedia:Rubrospinal_tract]
subset: uberon_slim
synonym: "monakow's tract" EXACT [FMA:72640]
xref: FMA:72640
xref: NIF_GrossAnatomy:birnlex_1476
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002715
name: spinal trigeminal tract of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1477-FMA_72625
xref: FMA:72625
xref: NIF_GrossAnatomy:birnlex_1477
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002716
name: collateral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1480-FMA_83751
def: "." [Wikipedia:Collateral_fissure]
subset: uberon_slim
synonym: "collateral fissure" EXACT [FMA:83751]
xref: FMA:83751
xref: ncithesaurus:Collateral_Fissure
xref: NIF_GrossAnatomy:birnlex_1480
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002717
name: rostral interstitial nucleus of medial longitudinal fasciculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1481-FMA_72433
def: "." [Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus]
subset: uberon_slim
synonym: "rostral interstitial nucleus of MLF" EXACT [FMA:72433]
synonym: "rostral interstitial nucleus of mlf" EXACT []
xref: FMA:72433
xref: NIF_GrossAnatomy:birnlex_1481
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0002718
name: solitary tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1483-FMA_72619
def: "." [Wikipedia:Solitary_tract]
subset: uberon_slim
synonym: "respiratory bundle of Gierke" EXACT [FMA:72619]
synonym: "respiratory bundle of gierke" EXACT []
xref: FMA:72619
xref: NIF_GrossAnatomy:birnlex_1483
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002719
name: spino-olivary tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1484-FMA_72643
def: "." [Wikipedia:Spino-olivary_tract]
subset: uberon_slim
synonym: "helweg's tract" EXACT [FMA:72643]
xref: FMA:72643
xref: NIF_GrossAnatomy:birnlex_1484
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002720
name: mammillary peduncle
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1486-FMA_62061
synonym: "peduncle of mammillary body" EXACT [FMA:62061]
xref: FMA:62061
xref: NIF_GrossAnatomy:birnlex_1486
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002721
name: lateral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1487-FMA_77801
def: "." [Wikipedia:Lateral_sulcus]
subset: uberon_slim
synonym: "fissure of Sylvius" EXACT [FMA:77801]
synonym: "fissure of sylvius" EXACT []
synonym: "lateral cerebral fissure" EXACT [FMA:77801]
synonym: "lateral cerebral sulcus" EXACT [FMA:77801]
synonym: "lateral fissure" EXACT [FMA:77801]
synonym: "lateral fissure of Sylvius" EXACT [FMA:77801]
synonym: "lateral fissure of sylvius" EXACT []
synonym: "transverse cerebral fissure" EXACT [FMA:77801]
xref: FMA:77801
xref: ncithesaurus:Fissure_of_Sylvius
xref: NIF_GrossAnatomy:birnlex_1487
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002722
name: trochlear nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1488-FMA_54518
def: "." [Wikipedia:Trochlear_nucleus]
subset: uberon_slim
synonym: "fourth cranial nerve nucleus" EXACT [FMA:54518]
synonym: "nucleus of trochlear nerve" EXACT [FMA:54518]
xref: FMA:54518
xref: NIF_GrossAnatomy:birnlex_1488
is_a: UBERON:0000126 ! implied link automatically realized ! cranial nerve nucleus
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001644 ! trochlear nerve
[Term]
id: UBERON:0002723
name: mammillary princeps fasciculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1492-FMA_62057
synonym: "principal mammillary fasciculus" EXACT [FMA:62057]
synonym: "principle mamillary fasciculus" EXACT [FMA:62057]
xref: FMA:62057
xref: NIF_GrossAnatomy:birnlex_1492
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002724
name: limen of insula
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1493-FMA_75266
synonym: "angulus gyri olfactorii lateralis" EXACT [FMA:75266]
synonym: "insula limen" EXACT [FMA:75266]
xref: FMA:75266
xref: NIF_GrossAnatomy:birnlex_1493
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002725
name: mammillotegmental fasciculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1497-FMA_62058
synonym: "gudden tract" EXACT [FMA:62058]
synonym: "mammillotegmental tract" EXACT [FMA:62058]
synonym: "von Gudden's tract" EXACT [FMA:62058]
synonym: "von gudden's tract" EXACT []
xref: FMA:62058
xref: NIF_GrossAnatomy:birnlex_1497
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002726
name: cervical spinal cord
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1499-FMA_71166
synonym: "cervical segments of spinal cord [1-8]" EXACT [FMA:71166]
synonym: "cervical spinal cord" EXACT [FMA:71166]
xref: FMA:71166
xref: ncithesaurus:Cervical_Spinal_Cord
xref: NIF_GrossAnatomy:birnlex_1499
is_a: UBERON:0001948 ! regional part of spinal cord
[Term]
id: UBERON:0002727
name: medial medullary lamina
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1501-FMA_62470
synonym: "inner medullary lamina" EXACT [FMA:62470]
synonym: "internal medullary lamina of corpus striatum" EXACT [FMA:62470]
synonym: "internal medullary lamina of globus pallidus" EXACT [FMA:62470]
synonym: "internal medullary lamina of lentiform nucleus" EXACT [FMA:62470]
synonym: "medial medullary lamina" EXACT [FMA:62470]
synonym: "medial medullary lamina of corpus striatum" EXACT [FMA:62470]
synonym: "medial medullary lamina of pallidum" EXACT [FMA:62470]
synonym: "medial medullary stria" EXACT [FMA:62470]
xref: FMA:62470
xref: NIF_GrossAnatomy:birnlex_1501
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
relationship: part_of UBERON:0001875 ! globus pallidus
[Term]
id: UBERON:0002728
name: entorhinal cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1508-FMA_72356
def: "." [Wikipedia:Entorhinal_cortex]
subset: uberon_slim
synonym: "area 28 of Brodmann (Crosby)" EXACT [FMA:72356]
synonym: "area 28 of brodmann (crosby)" EXACT []
synonym: "entorhinal cortex" EXACT [FMA:72356]
synonym: "secondary olfactory cortex" EXACT [FMA:72356]
synonym: "secondary olfactory cortical area (Carpenter)" EXACT [FMA:72356]
synonym: "secondary olfactory cortical area (carpenter)" EXACT []
xref: EFO:0001920
xref: FMA:72356
xref: NIF_GrossAnatomy:birnlex_1508
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002729
name: claustral amygdaloid area
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1515-FMA_61869
synonym: "claustrum diffusa" EXACT [FMA:61869]
synonym: "claustrum parvum" EXACT [FMA:61869]
synonym: "ventral claustrum" EXACT [FMA:61869]
synonym: "ventral portion of claustrum" EXACT [FMA:61869]
xref: FMA:61869
xref: NIF_GrossAnatomy:birnlex_1515
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002730
name: regional part of thalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1517-FMA_67705
synonym: "segment of thalamus" EXACT [NIF_GrossAnatomy:birnlex_1517]
synonym: "thalamus segment" EXACT [FMA:67705]
xref: FMA:67705
xref: NIF_GrossAnatomy:birnlex_1517
is_a: UBERON:0002784 ! regional part of diencephalon
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002731
name: vestibulocochlear nerve root
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1519-FMA_72499
synonym: "central part of vestibulocochlear nerve" EXACT [FMA:72499]
synonym: "statoacoustic nerve fibers" EXACT [FMA:72499]
synonym: "vestibulocochlear nerve fibers" EXACT [FMA:72499]
synonym: "vestibulocochlear nerve roots" EXACT [FMA:72499]
xref: FMA:72499
xref: NIF_GrossAnatomy:birnlex_1519
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002732
name: longitudinal pontine fibers
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1523-FMA_72513
synonym: "longitudinal fasciculus of the pons" EXACT [FMA:72513]
synonym: "longitudinal pontine fibers" EXACT [FMA:72513]
synonym: "longitudinal pontine fibres" EXACT [FMA:72513]
xref: FMA:72513
xref: NIF_GrossAnatomy:birnlex_1523
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002733
name: intralaminar nuclear group
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1530-FMA_62021
def: "." [Wikipedia:Intralaminar_thalamic_nuclei]
subset: uberon_slim
synonym: "intralaminar nuclear group" EXACT [FMA:62021]
synonym: "intralaminar nuclei of thalamus" EXACT [FMA:62021]
synonym: "intralaminar thalamic nuclei" EXACT [FMA:62021]
synonym: "nonspecific thalamic system" EXACT [FMA:62021]
xref: FMA:62021
xref: NIF_GrossAnatomy:birnlex_1530
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002734
name: superior temporal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1534-FMA_83783
synonym: "parallel sulcus" EXACT [FMA:83783]
synonym: "sulcus t1" EXACT [FMA:83783]
synonym: "superior temporal fissure" EXACT [FMA:83783]
xref: FMA:83783
xref: ncithesaurus:Superior_Temporal_Sulcus
xref: NIF_GrossAnatomy:birnlex_1534
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002735
name: transverse pontine fibers
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1535-FMA_72514
synonym: "superficial transverse fibers of pons" EXACT [FMA:72514]
synonym: "transverse fibers of pons" EXACT [FMA:72514]
synonym: "transverse pontine fibers" EXACT [FMA:72514]
synonym: "transverse pontine fibres" EXACT [FMA:72514]
xref: FMA:72514
xref: NIF_GrossAnatomy:birnlex_1535
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002736
name: lateral nuclear group
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1537-FMA_62174
def: "." [Wikipedia:Lateral_nuclear_group]
subset: uberon_slim
synonym: "lateral nuclear group" EXACT [FMA:62174]
synonym: "lateral nucleus of thalamus" EXACT [FMA:62174]
synonym: "lateral thalamic nuclei" EXACT [FMA:62174]
xref: FMA:62174
xref: NIF_GrossAnatomy:birnlex_1537
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002737
name: lateral inferior limiting sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1540-FMA_74523
xref: FMA:74523
xref: NIF_GrossAnatomy:birnlex_1540
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002738
name: isthmus of cingulate gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1541-FMA_62502
synonym: "cingulate gyrus isthmus" EXACT [FMA:62502]
synonym: "isthmus of fornicate gyrus" EXACT [FMA:62502]
synonym: "isthmus of limbic lobe" EXACT [FMA:62502]
xref: FMA:62502
xref: NIF_GrossAnatomy:birnlex_1541
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002739
name: medial dorsal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1543-FMA_62156
def: "." [Wikipedia:Medial_dorsal_nucleus]
subset: uberon_slim
synonym: "dorsal medial nucleus of thalamus" EXACT [FMA:62156]
synonym: "dorsomedial nuclear group" EXACT [FMA:62156]
synonym: "dorsomedial nucleus" EXACT [FMA:62156]
synonym: "dorsomedial nucleus of thalamus" EXACT [FMA:62156]
synonym: "medial dorsal nucleus" EXACT [FMA:62156]
synonym: "medial dorsal nucleus of thalamus" EXACT [FMA:62156]
synonym: "medial nuclear group" EXACT [FMA:62156]
synonym: "medial thalamic nuclei" EXACT [FMA:62156]
synonym: "medial thalamic nucleus" EXACT [FMA:62156]
synonym: "mediodorsal nucleus" EXACT [FMA:62156]
synonym: "mediodorsal thalamic nucleus" EXACT [FMA:62156]
xref: BTO:0002453
xref: FMA:62156
xref: NIF_GrossAnatomy:birnlex_1543
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002740
name: posterior cingulate gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1546-FMA_61924
def: "." [Wikipedia:Posterior_cingulate_gyrus]
subset: uberon_slim
xref: FMA:61924
xref: NIF_GrossAnatomy:birnlex_1546
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002741
name: diagonal band
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1551-FMA_61973
def: "." [Wikipedia:Diagonal_band_of_Broca]
subset: uberon_slim
synonym: "broca's diagonal band" EXACT [FMA:61973]
synonym: "broca's diagonal gyrus" EXACT [FMA:61973]
synonym: "diagonal band of Broca" EXACT [FMA:61973]
synonym: "diagonal band of broca" EXACT []
synonym: "diagonal gyrus" EXACT [FMA:61973]
synonym: "olfactory fasciculus" EXACT [FMA:61973]
synonym: "olfactory radiations of Zuckerkandl" EXACT [FMA:61973]
synonym: "olfactory radiations of zuckerkandl" EXACT []
xref: BTO:0002445
xref: FMA:61973
xref: NIF_GrossAnatomy:birnlex_1551
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002742
name: lamina of septum pellucidum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1554-FMA_62472
synonym: "septum pellucidum lamina" EXACT [FMA:62472]
xref: FMA:62472
xref: NIF_GrossAnatomy:birnlex_1554
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002743
name: basal forebrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1560-FMA_77700
def: "." [Wikipedia:Basal_forebrain]
subset: uberon_slim
xref: BTO:0002444
xref: FMA:77700
xref: NIF_GrossAnatomy:birnlex_1560
is_a: UBERON:0002616 ! regional part of brain
[Term]
id: UBERON:0002744
name: hilum of dentate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1561-FMA_72548
synonym: "dentate nuclear hilum" EXACT [FMA:72548]
xref: FMA:72548
xref: NIF_GrossAnatomy:birnlex_1561
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002745
name: ventral amygdalofugal projection
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1563-FMA_61977
xref: FMA:61977
xref: NIF_GrossAnatomy:birnlex_1563
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002746
name: intermediate periventricular nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1564-FMA_62328
synonym: "intermediate periventricular nucleus of hypothalamus" EXACT [FMA:62328]
synonym: "periventricular nucleus at the tuberal level" EXACT [FMA:62328]
xref: FMA:62328
xref: NIF_GrossAnatomy:birnlex_1564
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002747
name: neodentate part of dentate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1567-FMA_72539
synonym: "neodentate portion of dentate nucleus" EXACT [FMA:72539]
xref: FMA:72539
xref: NIF_GrossAnatomy:birnlex_1567
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0002132 ! dentate nucleus
[Term]
id: UBERON:0002748
name: medial lemniscus of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1570-FMA_72621
xref: FMA:72621
xref: NIF_GrossAnatomy:birnlex_1570
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003002 ! medial lemniscus
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
intersection_of: UBERON:0003002 ! medial lemniscus
intersection_of: part_of UBERON:0000958 ! medulla
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002749
name: regional part of cerebellar cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1571-FMA_76924
synonym: "cerebellar cortical segment" EXACT [FMA:76924]
synonym: "segment of cerebellar cortex" EXACT [NIF_GrossAnatomy:birnlex_1571]
xref: FMA:76924
xref: NIF_GrossAnatomy:birnlex_1571
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0002750
name: medial longitudinal fasciculus of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1574-FMA_72618
xref: FMA:72618
xref: NIF_GrossAnatomy:birnlex_1574
is_a: UBERON:0002309 ! medial longitudinal fasciculus
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
intersection_of: UBERON:0002309 ! medial longitudinal fasciculus
intersection_of: part_of UBERON:0000958 ! medulla
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002751
name: inferior temporal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1577-FMA_61907
def: "." [Wikipedia:Inferior_temporal_gyrus]
subset: uberon_slim
synonym: "lateral occipitotemporal gyrus (Heimer-83)" EXACT [FMA:61907]
synonym: "lateral occipitotemporal gyrus (heimer-83)" EXACT []
xref: FMA:61907
xref: ncithesaurus:Inferior_Temporal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1577
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002752
name: olivocerebellar tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1579-FMA_72638
def: "." [Wikipedia:Olivocerebellar_tract]
subset: uberon_slim
xref: FMA:72638
xref: NIF_GrossAnatomy:birnlex_1579
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002753
name: posterior spinocerebellar tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1585-FMA_72641
def: "." [Wikipedia:Posterior_spinocerebellar_tract]
subset: uberon_slim
synonym: "dorsal spinocerebellar tract" EXACT [FMA:72641]
synonym: "flechsig's tract" EXACT [FMA:72641]
xref: FMA:72641
xref: NIF_GrossAnatomy:birnlex_1585
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002754
name: predorsal bundle
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1590-FMA_72614
synonym: "predorsal bundle of Edinger" EXACT [FMA:72614]
synonym: "predorsal bundle of edinger" EXACT []
synonym: "predorsal fasciculus" EXACT [FMA:72614]
synonym: "tectospinal fibers" EXACT [FMA:72614]
xref: FMA:72614
xref: NIF_GrossAnatomy:birnlex_1590
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002755
name: pyramidal decussation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1594-FMA_72633
def: "." [Wikipedia:Pyramidal_decussation]
subset: uberon_slim
synonym: "corticospinal decussation" EXACT [FMA:72633]
synonym: "decussation of corticospinal tract" EXACT [FMA:72633]
synonym: "decussation of pyramidal tract fibers" EXACT [FMA:72633]
synonym: "decussation of pyramids" EXACT [FMA:72633]
synonym: "decussation of pyramids of medulla" EXACT [FMA:72633]
synonym: "motor decussation" EXACT [FMA:72633]
synonym: "motor decussation of medulla" EXACT [FMA:72633]
xref: FMA:72633
xref: NIF_GrossAnatomy:birnlex_1594
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002756
name: anterior cingulate gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1603-FMA_61916
def: "." [Wikipedia:Anterior_cingulate_gyrus]
subset: uberon_slim
xref: FMA:61916
xref: NIF_GrossAnatomy:birnlex_1603
is_a: UBERON:0000200 ! gyrus
[Term]
id: UBERON:0002757
name: regional part of epithalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1607-FMA_62013
synonym: "epithalamus segment" EXACT [FMA:62013]
synonym: "segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607]
xref: FMA:62013
xref: NIF_GrossAnatomy:birnlex_1607
is_a: UBERON:0002784 ! regional part of diencephalon
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001899 ! epithalamus
[Term]
id: UBERON:0002758
name: dorsal nucleus of medial geniculate body
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1608-FMA_62216
synonym: "dorsal nucleus of medial geniculate complex" EXACT [FMA:62216]
xref: BTO:0002673
xref: FMA:62216
xref: NIF_GrossAnatomy:birnlex_1608
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001927 ! medial geniculate body
[Term]
id: UBERON:0002759
name: magnocellular nucleus of medial geniculate body
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1612-FMA_62218
synonym: "medial division of medial geniculate body" EXACT [FMA:62218]
synonym: "medial geniculate complex, medial part" EXACT [FMA:62218]
synonym: "medial geniculate nucleus, medial part" EXACT [FMA:62218]
synonym: "medial magnocellular nucleus of medial geniculate body" EXACT [FMA:62218]
synonym: "medial nucleus of medial geniculate body" EXACT [FMA:62218]
xref: BTO:0002672
xref: FMA:62218
xref: NIF_GrossAnatomy:birnlex_1612
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001927 ! medial geniculate body
[Term]
id: UBERON:0002760
name: ventral corticospinal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1618-FMA_72636
def: "." [Wikipedia:Ventral_corticospinal_tract]
subset: uberon_slim
synonym: "anterior corticospinal tract" EXACT [FMA:72636]
synonym: "anterior pyramidal tract" EXACT [FMA:72636]
synonym: "anterior tract of Turck" EXACT [FMA:72636]
synonym: "anterior tract of turck" EXACT []
synonym: "bundle of Turck" EXACT [FMA:72636]
synonym: "bundle of turck" EXACT []
synonym: "column of Turck" EXACT [FMA:72636]
synonym: "column of turck" EXACT []
xref: FMA:72636
xref: NIF_GrossAnatomy:birnlex_1618
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002761
name: inferior frontal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1619-FMA_83757
def: "." [Wikipedia:Inferior_frontal_sulcus]
subset: uberon_slim
synonym: "inferior frontal fissure" EXACT [FMA:83757]
synonym: "sulcus f2" EXACT [FMA:83757]
xref: FMA:83757
xref: ncithesaurus:Inferior_Frontal_Sulcus
xref: NIF_GrossAnatomy:birnlex_1619
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002762
name: internal medullary lamina of thalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1621-FMA_62079
synonym: "internal medullary lamina of thalamus" EXACT [FMA:62079]
xref: FMA:62079
xref: NIF_GrossAnatomy:birnlex_1621
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002763
name: accessory medullary lamina
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1626-FMA_62471
synonym: "accessory medullary lamina" EXACT [FMA:62471]
synonym: "accessory medullary lamina of corpus striatum" EXACT [FMA:62471]
synonym: "incomplete medullary lamina of globus pallidus" EXACT [FMA:62471]
xref: FMA:62471
xref: NIF_GrossAnatomy:birnlex_1626
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
relationship: part_of UBERON:0001875 ! globus pallidus
[Term]
id: UBERON:0002764
name: inferior precentral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1627-FMA_83764
synonym: "inferior part of precentral fissure" EXACT [FMA:83764]
xref: FMA:83764
xref: NIF_GrossAnatomy:birnlex_1627
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002765
name: lateral medullary lamina
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1634-FMA_62469
synonym: "external medullary lamina of corpus striatum" EXACT [FMA:62469]
synonym: "external medullary lamina of globus pallidus" EXACT [FMA:62469]
synonym: "external medullary lamina of lentiform nucleus" EXACT [FMA:62469]
synonym: "lateral medullary lamina" EXACT [FMA:62469]
synonym: "lateral medullary lamina of corpus striatum" EXACT [FMA:62469]
synonym: "lateral medullary lamina of pallidum" EXACT [FMA:62469]
synonym: "lateral medullary stria" EXACT [FMA:62469]
synonym: "outer medullary lamina" EXACT [FMA:62469]
xref: FMA:62469
xref: NIF_GrossAnatomy:birnlex_1634
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
relationship: part_of UBERON:0001875 ! globus pallidus
[Term]
id: UBERON:0002766
name: fusiform gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1641-FMA_61908
def: "." [Wikipedia:Fusiform_gyrus]
subset: uberon_slim
synonym: "lateral occipitotemporal gyrus" EXACT [FMA:61908]
synonym: "medial occipitotemporal gyrus-1 (Heimer)" EXACT [FMA:61908]
synonym: "medial occipitotemporal gyrus-1 (heimer)" EXACT []
synonym: "occipitotemporal gyrus" EXACT [FMA:61908]
xref: FMA:61908
xref: NIF_GrossAnatomy:birnlex_1641
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002767
name: inferior rostral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1642-FMA_83767
xref: FMA:83767
xref: NIF_GrossAnatomy:birnlex_1642
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002768
name: vestibulospinal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1643-FMA_72646
def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the vestibular nucleus of the pons towards target cells in the spinal cord[GO]." [Wikipedia:Vestibulospinal_tract]
subset: uberon_slim
xref: FMA:72646
xref: NIF_GrossAnatomy:birnlex_1643
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002769
name: superior temporal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1648-FMA_61905
def: "." [Wikipedia:Superior_temporal_gyrus]
subset: uberon_slim
xref: EFO:0001944
xref: FMA:61905
xref: ncithesaurus:Superior_Temporal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1648
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002770
name: posterior hypothalamic region
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1651-FMA_62029
synonym: "mammillary level of hypothalamus" EXACT [FMA:62029]
synonym: "mammillary region" EXACT [FMA:62029]
synonym: "posterior hypothalamus" EXACT [FMA:62029]
xref: FMA:62029
xref: NIF_GrossAnatomy:birnlex_1651
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
relationship: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0002771
name: middle temporal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1653-FMA_61906
def: "." [Wikipedia:Middle_temporal_gyrus]
subset: uberon_slim
synonym: "intermediate temporal gyrus" EXACT [FMA:61906]
xref: EFO:0002466
xref: FMA:61906
xref: ncithesaurus:Middle_Temporal_Gyrus
xref: NIF_GrossAnatomy:birnlex_1653
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002772
name: olfactory sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1655-FMA_83769
def: "." [Wikipedia:Olfactory_sulcus]
subset: uberon_slim
xref: FMA:83769
xref: ncithesaurus:Olfactory_Sulcus
xref: NIF_GrossAnatomy:birnlex_1655
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002773
name: anterior transverse temporal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1657-FMA_61909
synonym: "anterior transverse temporal convolution of Heschl" EXACT [FMA:61909]
synonym: "anterior transverse temporal convolution of heschl" EXACT []
synonym: "first transverse gyrus of Heschl" EXACT [FMA:61909]
synonym: "first transverse gyrus of heschl" EXACT []
synonym: "great transverse gyrus of Heschl" EXACT [FMA:61909]
synonym: "great transverse gyrus of heschl" EXACT []
xref: FMA:61909
xref: NIF_GrossAnatomy:birnlex_1657
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002774
name: posterior transverse temporal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1661-FMA_61910
synonym: "posterior transverse temporal convolution of Heschl" EXACT [FMA:61910]
synonym: "posterior transverse temporal convolution of heschl" EXACT []
xref: FMA:61910
xref: NIF_GrossAnatomy:birnlex_1661
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002775
name: olivocochlear bundle
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1666-FMA_72485
synonym: "bundle of Rasmussen" EXACT [FMA:72485]
synonym: "bundle of rasmussen" EXACT []
synonym: "efferent cochlear bundle" EXACT [FMA:72485]
synonym: "olivocochlear bundle of Rasmussen" EXACT [FMA:72485]
synonym: "olivocochlear bundle of rasmussen" EXACT []
synonym: "olivocochlear tract" EXACT [FMA:72485]
xref: FMA:72485
xref: NIF_GrossAnatomy:birnlex_1666
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002776
name: ventral nuclear group
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1669-FMA_62022
def: "." [Wikipedia:Ventral_nuclear_group]
subset: uberon_slim
synonym: "ventral nuclear group" EXACT [FMA:62022]
synonym: "ventral nuclear mass" EXACT [FMA:62022]
synonym: "ventral nuclei of thalamus" EXACT [FMA:62022]
synonym: "ventral tier thalamic nuclei" EXACT [FMA:62022]
xref: FMA:62022
xref: NIF_GrossAnatomy:birnlex_1669
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002777
name: neostriatum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1672-FMA_77617
def: "." [Wikipedia:Neostriatum]
subset: uberon_slim
xref: BTO:0000418
xref: FMA:77617
xref: NIF_GrossAnatomy:birnlex_1672
is_a: UBERON:0002020 ! gray matter of neuraxis
relationship: has_part UBERON:0001873 ! caudate nucleus
relationship: has_part UBERON:0001874 ! putamen
[Term]
id: UBERON:0002778
name: ventral pallidum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1674-FMA_77613
xref: FMA:77613
xref: NIF_GrossAnatomy:birnlex_1674
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002779
name: lateral superior olivary nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1675-FMA_72472
def: "." [Wikipedia:Accessory_olivary_nucleus]
subset: uberon_slim
synonym: "accessory olivary nucleus" EXACT [FMA:72472]
synonym: "accessory superior olivary nucleus" EXACT [FMA:72472]
synonym: "accessory superior olive" EXACT [FMA:72472]
synonym: "lateral superior olive" EXACT [FMA:72472]
synonym: "superior olivary nucleus, lateral part" EXACT [FMA:72472]
xref: FMA:72472
xref: NIF_GrossAnatomy:birnlex_1675
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0002128 ! superior olivary complex
[Term]
id: UBERON:0002780
name: regional part of forebrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1677-FMA_61996
synonym: "forebrain segment" EXACT [FMA:61996]
synonym: "segment of forebrain" EXACT [NIF_GrossAnatomy:birnlex_1677]
xref: FMA:61996
xref: NIF_GrossAnatomy:birnlex_1677
is_a: UBERON:0002616 ! regional part of brain
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0002781
name: caudal part of ventral posterolateral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1681-FMA_62206
synonym: "ventral posterior lateral nucleus (Ilinsky)" EXACT [FMA:62206]
synonym: "ventral posterior lateral nucleus (ilinsky)" EXACT []
synonym: "ventral posterolateral nucleus, caudal part" EXACT [FMA:62206]
synonym: "ventral posterolateral thalamic nucleus, caudal part" EXACT [FMA:62206]
xref: FMA:62206
xref: NIF_GrossAnatomy:birnlex_1681
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002782
name: medial superior olivary nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1682-FMA_72473
def: "." [Wikipedia:Medial_superior_olive]
subset: uberon_slim
synonym: "chief nucleus of superior olive" EXACT [FMA:72473]
synonym: "chief superior olivary nucleus" EXACT [FMA:72473]
synonym: "main superior olivary nucleus" EXACT [FMA:72473]
synonym: "medial superior olive" EXACT [FMA:72473]
synonym: "principal superior olivary nucleus" EXACT [FMA:72473]
synonym: "superior olivary nucleus, medial part" EXACT [FMA:72473]
xref: FMA:72473
xref: NIF_GrossAnatomy:birnlex_1682
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0002128 ! superior olivary complex
[Term]
id: UBERON:0002783
name: central tegmental tract of pons
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1683-FMA_72494
xref: FMA:72494
xref: NIF_GrossAnatomy:birnlex_1683
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002784
name: regional part of diencephalon
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1685-FMA_62005
synonym: "diencephalon segment" EXACT [FMA:62005]
synonym: "segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685]
xref: FMA:62005
xref: NIF_GrossAnatomy:birnlex_1685
is_a: UBERON:0002780 ! regional part of forebrain
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0002785
name: regional part of lateral hypothalamic region
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1687-FMA_62312
synonym: "lateral hypothalamic region segment" EXACT [FMA:62312]
synonym: "segment of lateral hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_1687]
xref: FMA:62312
xref: NIF_GrossAnatomy:birnlex_1687
is_a: UBERON:0003048 ! regional part of hypothalamus
[Term]
id: UBERON:0002786
name: abducens nerve fibers
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1689-FMA_72491
synonym: "abducens nerve fibers" EXACT [FMA:72491]
synonym: "central part of abducens nerve" EXACT [FMA:72491]
synonym: "root of abducens nerve" EXACT [FMA:72491]
xref: FMA:72491
xref: NIF_GrossAnatomy:birnlex_1689
is_a: UBERON:0002211 ! segment of nerve
[Term]
id: UBERON:0002787
name: decussation of trochlear nerve
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1690-FMA_72488
synonym: "decussation of trochlear nerve (IV)" EXACT [FMA:72488]
synonym: "decussation of trochlear nerve (iv)" EXACT []
synonym: "trochlear neural decussation" EXACT [FMA:72488]
xref: FMA:72488
xref: NIF_GrossAnatomy:birnlex_1690
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002788
name: anterior nuclear group
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1692-FMA_62019
def: "." [Wikipedia:Anterior_nuclear_group]
subset: uberon_slim
synonym: "anterior nuclear group" EXACT [FMA:62019]
synonym: "anterior nuclei of thalamus" EXACT [FMA:62019]
synonym: "anterior nucleus of thalamus" EXACT [FMA:62019]
synonym: "anterior thalamic nuclei" EXACT [FMA:62019]
xref: FMA:62019
xref: NIF_GrossAnatomy:birnlex_1692
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002789
name: regional part of posterior hypothalamic region
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1697-FMA_62311
synonym: "posterior hypothalamic region segment" EXACT [FMA:62311]
synonym: "segment of posterior hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_1697]
xref: FMA:62311
xref: NIF_GrossAnatomy:birnlex_1697
is_a: UBERON:0003048 ! regional part of hypothalamus
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002770 ! posterior hypothalamic region
[Term]
id: UBERON:0002790
name: dorsal acoustic stria
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1698-FMA_72496
synonym: "posterior acoustic stria" EXACT [FMA:72496]
xref: FMA:72496
xref: NIF_GrossAnatomy:birnlex_1698
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002791
name: regional part of telencephalon
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1700-FMA_62374
synonym: "segment of telencephalon" EXACT [NIF_GrossAnatomy:birnlex_1700]
synonym: "telencephalon segment" EXACT [FMA:62374]
xref: FMA:62374
xref: NIF_GrossAnatomy:birnlex_1700
is_a: UBERON:0002780 ! regional part of forebrain
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0002792
name: lumbar spinal cord
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1704-FMA_71168
def: "." [Wikipedia:Lumbar_spinal_cord]
subset: uberon_slim
synonym: "lumbar segments of spinal cord [1-5]" EXACT [FMA:71168]
synonym: "lumbar spinal cord" EXACT [FMA:71168]
xref: FMA:71168
xref: ncithesaurus:Lumbar_Spinal_Cord
xref: NIF_GrossAnatomy:birnlex_1704
is_a: UBERON:0001948 ! regional part of spinal cord
[Term]
id: UBERON:0002793
name: dorsal longitudinal fasciculus of pons
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1707-FMA_72492
xref: FMA:72492
xref: NIF_GrossAnatomy:birnlex_1707
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus
intersection_of: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002794
name: medial longitudinal fasciculus of pons
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1708-FMA_72493
xref: FMA:72493
xref: NIF_GrossAnatomy:birnlex_1708
is_a: UBERON:0002309 ! medial longitudinal fasciculus
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
intersection_of: UBERON:0002309 ! medial longitudinal fasciculus
intersection_of: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002795
name: frontal pole
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1716-FMA_74885
def: "." [Wikipedia:Frontal_pole]
subset: uberon_slim
xref: FMA:74885
xref: NIF_GrossAnatomy:birnlex_1716
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002796
name: motor root of trigeminal nerve
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1717-FMA_52612
synonym: "motor branch of trigeminal nerve" EXACT [FMA:52612]
synonym: "motor root of Nervus V" EXACT [FMA:52612]
synonym: "motor root of nervus v" EXACT []
synonym: "radix motoria (Nervus trigeminus [V])" EXACT [FMA:52612]
synonym: "radix motoria (nervus trigeminus [v])" EXACT []
xref: FMA:52612
xref: NIF_GrossAnatomy:birnlex_1717
is_a: UBERON:0002211 ! segment of nerve
[Term]
id: UBERON:0002797
name: dorsal trigeminal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1718-FMA_72500
def: "." [Wikipedia:Dorsal_trigeminal_tract]
subset: uberon_slim
synonym: "dorsal ascending trigeminal tract" EXACT [FMA:72500]
synonym: "dorsal division of trigeminal lemniscus" EXACT [FMA:72500]
synonym: "dorsal secondary ascending tract of V" EXACT [FMA:72500]
synonym: "dorsal secondary ascending tract of v" EXACT []
synonym: "dorsal secondary tract of V" EXACT [FMA:72500]
synonym: "dorsal secondary tract of v" EXACT []
synonym: "dorsal trigeminal lemniscus" EXACT [FMA:72500]
synonym: "dorsal trigeminal pathway" EXACT [FMA:72500]
synonym: "dorsal trigeminothalamic tract" EXACT [FMA:72500]
synonym: "posterior trigeminothalamic tract" EXACT [FMA:72500]
synonym: "reticulothalamic tract" EXACT [FMA:72500]
synonym: "uncrossed dorsal trigeminothalamic tract" EXACT [FMA:72500]
xref: FMA:72500
xref: NIF_GrossAnatomy:birnlex_1718
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002798
name: spinothalamic tract of pons
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1719-FMA_72504
xref: FMA:72504
xref: NIF_GrossAnatomy:birnlex_1719
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
is_a: UBERON:0002944 ! spinothalamic tract of medulla
intersection_of: UBERON:0002944 ! spinothalamic tract of medulla
intersection_of: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002799
name: fronto-orbital sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1724-FMA_83768
synonym: "fronto-orbital dimple" EXACT [FMA:83768]
synonym: "orbito-frontal sulcus" EXACT [FMA:83768]
xref: FMA:83768
xref: NIF_GrossAnatomy:birnlex_1724
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002800
name: spinal trigeminal tract of pons
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1725-FMA_72507
xref: FMA:72507
xref: NIF_GrossAnatomy:birnlex_1725
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002801
name: stratum zonale of thalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1727-FMA_83905
synonym: "neuraxis stratum" EXACT [FMA:83905]
xref: FMA:83905
xref: NIF_GrossAnatomy:birnlex_1727
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002802
name: left parietal lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1728-FMA_72974
xref: FMA:72974
xref: NIF_GrossAnatomy:birnlex_1728
is_a: UBERON:0001872 ! parietal lobe
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
relationship: disconnected_from UBERON:0002803 ! right parietal lobe
[Term]
id: UBERON:0002803
name: right parietal lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1729-FMA_72973
xref: FMA:72973
xref: NIF_GrossAnatomy:birnlex_1729
is_a: UBERON:0001872 ! parietal lobe
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
[Term]
id: UBERON:0002804
name: left limbic lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1780-FMA_72981
xref: FMA:72981
xref: NIF_GrossAnatomy:birnlex_1780
is_a: UBERON:0002600 ! limbic lobe
[Term]
id: UBERON:0002805
name: right limbic lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1781-FMA_72980
xref: FMA:72980
xref: NIF_GrossAnatomy:birnlex_1781
is_a: UBERON:0002600 ! limbic lobe
[Term]
id: UBERON:0002806
name: left occipital lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1782-FMA_72976
xref: FMA:72976
xref: NIF_GrossAnatomy:birnlex_1782
is_a: UBERON:0002021 ! occipital lobe
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
relationship: disconnected_from UBERON:0002807 ! right occipital lobe
[Term]
id: UBERON:0002807
name: right occipital lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1783-FMA_72975
xref: FMA:72975
xref: NIF_GrossAnatomy:birnlex_1783
is_a: UBERON:0002021 ! occipital lobe
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
[Term]
id: UBERON:0002808
name: left temporal lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1784-FMA_72972
xref: FMA:72972
xref: NIF_GrossAnatomy:birnlex_1784
is_a: UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002809
name: right temporal lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1785-FMA_72971
xref: FMA:72971
xref: NIF_GrossAnatomy:birnlex_1785
is_a: UBERON:0001871 ! temporal lobe
[Term]
id: UBERON:0002810
name: right frontal lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1786-FMA_72969
xref: FMA:72969
xref: NIF_GrossAnatomy:birnlex_1786
is_a: UBERON:0001870 ! frontal lobe
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
[Term]
id: UBERON:0002811
name: left frontal lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1787-FMA_72970
xref: FMA:72970
xref: NIF_GrossAnatomy:birnlex_1787
is_a: UBERON:0001870 ! frontal lobe
relationship: adjacent_to UBERON:0002921 ! longitudinal fissure
relationship: disconnected_from UBERON:0002810 ! right frontal lobe
[Term]
id: UBERON:0002812
name: left cerebral hemisphere
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1795-FMA_61819
xref: FMA:61819
xref: ncithesaurus:Left_Cerebral_Hemisphere
xref: NIF_GrossAnatomy:birnlex_1795
is_a: UBERON:0001869 ! cerebral hemisphere
[Term]
id: UBERON:0002813
name: right cerebral hemisphere
alt_id: UBERON:NIF_GrossAnatomy_birnlex_1797-FMA_67292
xref: FMA:67292
xref: ncithesaurus:Right_Cerebral_Hemisphere
xref: NIF_GrossAnatomy:birnlex_1797
is_a: UBERON:0001869 ! cerebral hemisphere
[Term]
id: UBERON:0002814
name: posterior superior fissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081254-FMA_83733
synonym: "post-clival fissure" EXACT [FMA:83733]
synonym: "postclival fissure" EXACT [FMA:83733]
synonym: "Posterior superior fissure" EXACT [FMA:83733, NIF_GrossAnatomy:birnlex_20081254]
synonym: "postlunate fissure" EXACT [FMA:83733]
xref: FMA:83733
xref: NIF_GrossAnatomy:birnlex_20081254
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002815
name: horizontal fissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081255-FMA_14697
def: "." [Wikipedia:Horizontal_fissure_of_cerebellum]
synonym: "Horizontal fissure" EXACT [NIF_GrossAnatomy:birnlex_20081255]
synonym: "Horizontal fissure of cerebellum" EXACT [Wikipedia:Horizontal_fissure_of_cerebellum]
synonym: "horizontal fissure of cerebellum" EXACT []
synonym: "Horizontal sulcus" EXACT [Wikipedia:Horizontal_fissure_of_cerebellum]
synonym: "horizontal sulcus" EXACT []
xref: FMA:14697
xref: FMA:75135
xref: NIF_GrossAnatomy:birnlex_20081255
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002816
name: prepyramidal fissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081257-FMA_75138
synonym: "prebiventral fissure of cerebellum" EXACT [FMA:75138]
synonym: "Prepyramidal fissure" EXACT [NIF_GrossAnatomy:birnlex_20081257]
synonym: "prepyramidal sulcus" EXACT [FMA:75138]
xref: FMA:75138
xref: NIF_GrossAnatomy:birnlex_20081257
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002817
name: secondary fissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081258-FMA_84043
synonym: "post-pyramidal fissure of cerebellum" EXACT [FMA:84043]
synonym: "postpyramidal fissure" EXACT [FMA:84043]
synonym: "Secondary fissure" EXACT [NIF_GrossAnatomy:birnlex_20081258]
synonym: "secondary fissure" EXACT [FMA:84043]
xref: FMA:84043
xref: NIF_GrossAnatomy:birnlex_20081258
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002818
name: posterolateral fissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081259-FMA_83730
synonym: "dorsolateral fissure of cerebellum" EXACT [FMA:83730]
synonym: "Posterolateral fissure" EXACT [NIF_GrossAnatomy:birnlex_20081259]
synonym: "prenodular fissure" EXACT [FMA:83730]
synonym: "prenodular sulcus" EXACT [FMA:83730]
synonym: "uvulonodular fissure" EXACT [FMA:83730]
xref: FMA:83730
xref: NIF_GrossAnatomy:birnlex_20081259
is_a: UBERON:0000464 ! anatomical space
relationship: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002819
name: apex of cochlea
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2523-FMA_75641
def: "." [Wikipedia:Apex_of_cochlea]
subset: uberon_slim
synonym: "cochlea apex" EXACT [FMA:75641]
synonym: "cupula of cochlea" EXACT [FMA:75641]
xref: FMA:75641
xref: NIF_GrossAnatomy:birnlex_2523
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002820
name: zona arcuata of basilar membrane of cochlea
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2528-FMA_75709
xref: FMA:75709
xref: NIF_GrossAnatomy:birnlex_2528
is_a: UBERON:0000476 ! acellular anatomical structure
[Term]
id: UBERON:0002821
name: zona arcuata of basilar membrane of cochlea
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2529-FMA_75709
xref: FMA:75709
xref: NIF_GrossAnatomy:birnlex_2529
is_a: UBERON:0000476 ! acellular anatomical structure
[Term]
id: UBERON:0002822
name: macula lutea proper
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2542-FMA_58671
xref: FMA:58671
xref: NIF_GrossAnatomy:birnlex_2542
is_a: UBERON:0000064 ! organ part
relationship: part_of UBERON:0000053 ! macula lutea
[Term]
id: UBERON:0002823
name: clivus of fovea centralis
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2544-FMA_58674
comment: NIF differs from FMA
synonym: "fovea centralis clivus" EXACT [FMA:58674]
xref: FMA:58674
xref: NIF_GrossAnatomy:birnlex_2544
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001786 ! fovea centralis
[Term]
id: UBERON:0002824
name: vestibular ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2549-FMA_53435
def: "." [Wikipedia:Vestibular_ganglion]
subset: uberon_slim
synonym: "scarpa's ganglion" EXACT [FMA:53435]
xref: FMA:53435
xref: ncithesaurus:Vestibular_Ganglion
xref: NIF_GrossAnatomy:birnlex_2549
is_a: UBERON:0001714 ! ganglion of cranial nerve
[Term]
id: UBERON:0002825
name: superior part of vestibular ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2551-FMA_77531
xref: FMA:77531
xref: NIF_GrossAnatomy:birnlex_2551
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002826
name: inferior part of vestibular ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2552-FMA_77532
xref: FMA:77532
xref: NIF_GrossAnatomy:birnlex_2552
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002827
name: auditory ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2564-ZFA_0000588
synonym: "auditory ganglion" EXACT [ZFA:0000588]
synonym: "gVIII" EXACT [ZFA:0000588]
synonym: "gviii" EXACT []
synonym: "sag" EXACT [ZFA:0000588]
synonym: "statoacoustic ganglia" EXACT [ZFA:0000588]
xref: NIF_GrossAnatomy:birnlex_2564
xref: ZFA:0000588
is_a: UBERON:0002420 ! basal ganglia
relationship: part_of UBERON:0001690 ! ear
[Term]
id: UBERON:0002828
name: ventral cochlear nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2567-FMA_54621
def: "." [Wikipedia:Ventral_cochlear_nucleus]
subset: uberon_slim
synonym: "ventral cochlear nucleus" EXACT [FMA:54621]
xref: FMA:54621
xref: NIF_GrossAnatomy:birnlex_2567
is_a: UBERON:0001720 ! cochlear nucleus
[Term]
id: UBERON:0002829
name: dorsal cochlear nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2569-FMA_54624
def: "." [Wikipedia:Dorsal_cochlear_nucleus]
subset: uberon_slim
synonym: "dorsal cochlear nucleus" EXACT [FMA:54624]
synonym: "dorsal division of cochlear nucleus" EXACT [FMA:54624]
xref: FMA:54624
xref: ncithesaurus:Dorsal_Cochlear_Nucleus
xref: NIF_GrossAnatomy:birnlex_2569
is_a: UBERON:0001720 ! cochlear nucleus
[Term]
id: UBERON:0002830
name: anteroventral cochlear nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2572-FMA_72571
synonym: "anteroventral auditory nucleus" EXACT [FMA:72571]
xref: FMA:72571
xref: NIF_GrossAnatomy:birnlex_2572
is_a: UBERON:0001720 ! cochlear nucleus
[Term]
id: UBERON:0002831
name: posteroventral cochlear nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2573-FMA_72572
xref: FMA:72572
xref: NIF_GrossAnatomy:birnlex_2573
is_a: UBERON:0001720 ! cochlear nucleus
[Term]
id: UBERON:0002832
name: ventral nucleus of trapezoid body
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2576-FMA_72477
synonym: "anterior nucleus of trapezoid body" EXACT [FMA:72477]
xref: FMA:72477
xref: NIF_GrossAnatomy:birnlex_2576
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0002128 ! superior olivary complex
[Term]
id: UBERON:0002833
name: medial nucleus of trapezoid body
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2595-FMA_75732
xref: FMA:75732
xref: NIF_GrossAnatomy:birnlex_2595
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002834
name: cervical dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2599-FMA_6005
synonym: "cervical dorsal root ganglion" EXACT [FMA:6005]
xref: FMA:6005
xref: NIF_GrossAnatomy:birnlex_2599
is_a: UBERON:0000044 ! dorsal root ganglion
[Term]
id: UBERON:0002835
name: thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2600-FMA_6006
synonym: "thoracic dorsal root ganglion" EXACT [FMA:6006]
xref: FMA:6006
xref: NIF_GrossAnatomy:birnlex_2600
is_a: UBERON:0000044 ! dorsal root ganglion
is_a: UBERON:0000961 ! thoracic ganglion
intersection_of: UBERON:0000044 ! dorsal root ganglion
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0002836
name: lumbar dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2601-FMA_6007
synonym: "lumbar dorsal root ganglion" EXACT [FMA:6007]
xref: FMA:6007
xref: NIF_GrossAnatomy:birnlex_2601
is_a: UBERON:0000044 ! dorsal root ganglion
[Term]
id: UBERON:0002837
name: sacral dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2602-FMA_6008
synonym: "sacral dorsal root ganglion" EXACT [FMA:6008]
xref: FMA:6008
xref: NIF_GrossAnatomy:birnlex_2602
is_a: UBERON:0000044 ! dorsal root ganglion
[Term]
id: UBERON:0002838
name: first cervical dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2603-FMA_6010
synonym: "first cervical dorsal root ganglion" EXACT [FMA:6010]
xref: FMA:6010
xref: NIF_GrossAnatomy:birnlex_2603
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002839
name: second cervical dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2604-FMA_6315
synonym: "second cervical dorsal root ganglion" EXACT [FMA:6315]
xref: FMA:6315
xref: NIF_GrossAnatomy:birnlex_2604
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002840
name: third cervical dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2605-FMA_6316
synonym: "third cervical dorsal root ganglion" EXACT [FMA:6316]
xref: FMA:6316
xref: NIF_GrossAnatomy:birnlex_2605
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002841
name: fourth cervical dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2606-FMA_6317
synonym: "fourth cervical dorsal root ganglion" EXACT [FMA:6317]
xref: FMA:6317
xref: NIF_GrossAnatomy:birnlex_2606
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002842
name: fifth cervical dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2607-FMA_6318
synonym: "fifth cervical dorsal root ganglion" EXACT [FMA:6318]
xref: FMA:6318
xref: NIF_GrossAnatomy:birnlex_2607
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002843
name: seventh cervical dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2609-FMA_6360
synonym: "seventh cervical dorsal root ganglion" EXACT [FMA:6360]
xref: FMA:6360
xref: NIF_GrossAnatomy:birnlex_2609
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002844
name: eighth cervical dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2610-FMA_6361
synonym: "eighth cervical dorsal root ganglion" EXACT [FMA:6361]
xref: FMA:6361
xref: NIF_GrossAnatomy:birnlex_2610
is_a: UBERON:0002834 ! cervical dorsal root ganglion
[Term]
id: UBERON:0002845
name: first thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2611-FMA_6321
synonym: "first thoracic dorsal root ganglion" EXACT [FMA:6321]
xref: FMA:6321
xref: NIF_GrossAnatomy:birnlex_2611
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002846
name: second thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2612-FMA_6322
synonym: "second thoracic dorsal root ganglion" EXACT [FMA:6322]
xref: FMA:6322
xref: NIF_GrossAnatomy:birnlex_2612
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002847
name: third thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2613-FMA_6323
synonym: "third thoracic dorsal root ganglion" EXACT [FMA:6323]
xref: FMA:6323
xref: NIF_GrossAnatomy:birnlex_2613
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002848
name: fifth thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2615-FMA_6325
synonym: "fifth thoracic dorsal root ganglion" EXACT [FMA:6325]
xref: FMA:6325
xref: NIF_GrossAnatomy:birnlex_2615
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002849
name: sixth thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2616-FMA_6326
synonym: "sixth thoracic dorsal root ganglion" EXACT [FMA:6326]
xref: FMA:6326
xref: NIF_GrossAnatomy:birnlex_2616
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002850
name: seventh thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2617-FMA_6327
synonym: "seventh thoracic dorsal root ganglion" EXACT [FMA:6327]
xref: FMA:6327
xref: NIF_GrossAnatomy:birnlex_2617
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002851
name: eighth thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2618-FMA_6328
synonym: "eighth thoracic dorsal root ganglion" EXACT [FMA:6328]
xref: FMA:6328
xref: NIF_GrossAnatomy:birnlex_2618
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002852
name: ninth thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2619-FMA_6329
synonym: "ninth thoracic dorsal root ganglion" EXACT [FMA:6329]
xref: FMA:6329
xref: NIF_GrossAnatomy:birnlex_2619
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002853
name: tenth thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2620-FMA_6330
synonym: "tenth thoracic dorsal root ganglion" EXACT [FMA:6330]
xref: FMA:6330
xref: NIF_GrossAnatomy:birnlex_2620
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002854
name: eleventh thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2621-FMA_6331
synonym: "eleventh thoracic dorsal root ganglion" EXACT [FMA:6331]
xref: FMA:6331
xref: NIF_GrossAnatomy:birnlex_2621
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002855
name: twelfth thoracic dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2622-FMA_6332
synonym: "twelfth thoracic dorsal root ganglion" EXACT [FMA:6332]
xref: FMA:6332
xref: NIF_GrossAnatomy:birnlex_2622
is_a: UBERON:0002835 ! thoracic dorsal root ganglion
[Term]
id: UBERON:0002856
name: second lumbar dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2623-FMA_6336
synonym: "second lumbar dorsal root ganglion" EXACT [FMA:6336]
xref: FMA:6336
xref: NIF_GrossAnatomy:birnlex_2623
is_a: UBERON:0002836 ! lumbar dorsal root ganglion
[Term]
id: UBERON:0002857
name: first lumbar dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2624-FMA_6335
synonym: "first lumbar dorsal root ganglion" EXACT [FMA:6335]
xref: FMA:6335
xref: NIF_GrossAnatomy:birnlex_2624
is_a: UBERON:0002836 ! lumbar dorsal root ganglion
[Term]
id: UBERON:0002858
name: third lumbar dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2625-FMA_6337
synonym: "third lumbar dorsal root ganglion" EXACT [FMA:6337]
xref: FMA:6337
xref: NIF_GrossAnatomy:birnlex_2625
is_a: UBERON:0002836 ! lumbar dorsal root ganglion
[Term]
id: UBERON:0002859
name: fifth lumbar dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2627-FMA_6339
synonym: "fifth lumbar dorsal root ganglion" EXACT [FMA:6339]
xref: FMA:6339
xref: NIF_GrossAnatomy:birnlex_2627
is_a: UBERON:0002836 ! lumbar dorsal root ganglion
[Term]
id: UBERON:0002860
name: first sacral dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2628-FMA_6342
synonym: "first sacral dorsal root ganglion" EXACT [FMA:6342]
xref: FMA:6342
xref: NIF_GrossAnatomy:birnlex_2628
is_a: UBERON:0002837 ! sacral dorsal root ganglion
[Term]
id: UBERON:0002861
name: second sacral dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2629-FMA_6343
synonym: "second sacral dorsal root ganglion" EXACT [FMA:6343]
xref: FMA:6343
xref: NIF_GrossAnatomy:birnlex_2629
is_a: UBERON:0002837 ! sacral dorsal root ganglion
[Term]
id: UBERON:0002862
name: third sacral dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2630-FMA_6344
synonym: "third sacral dorsal root ganglion" EXACT [FMA:6344]
xref: FMA:6344
xref: NIF_GrossAnatomy:birnlex_2630
is_a: UBERON:0002837 ! sacral dorsal root ganglion
[Term]
id: UBERON:0002863
name: fifth sacral dorsal root ganglion
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2632-FMA_6346
synonym: "fifth sacral dorsal root ganglion" EXACT [FMA:6346]
xref: FMA:6346
xref: NIF_GrossAnatomy:birnlex_2632
is_a: UBERON:0002837 ! sacral dorsal root ganglion
[Term]
id: UBERON:0002864
name: accessory cuneate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2634-FMA_72603
def: "." [Wikipedia:Accessory_cuneate_nucleus]
subset: uberon_slim
synonym: "external cuneate nucleus" EXACT [FMA:72603]
synonym: "lateral cuneate nucleus" EXACT [FMA:72603]
synonym: "nucleus of corpus restiforme" EXACT [FMA:72603]
xref: FMA:72603
xref: NIF_GrossAnatomy:birnlex_2634
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002865
name: arcuate nucleus of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2635-FMA_72609
synonym: "arcuate nucleus-1" EXACT [FMA:72609]
synonym: "medial arcuate nucleus" EXACT [FMA:72609]
xref: FMA:72609
xref: NIF_GrossAnatomy:birnlex_2635
is_a: UBERON:0001932 ! implied link automatically realized ! arcuate nucleus of hypothalamus
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002878 ! implied link automatically realized ! nucleus intercalatus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
intersection_of: UBERON:0001932 ! arcuate nucleus of hypothalamus
intersection_of: part_of UBERON:0000958 ! medulla
[Term]
id: UBERON:0002866
name: caudal part of spinal trigeminal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2637-FMA_72606
synonym: "caudal nucleus (Kandell)" EXACT [FMA:72606]
synonym: "caudal nucleus (kandell)" EXACT []
synonym: "spinal trigeminal nucleus, caudal part" EXACT [FMA:72606]
xref: FMA:72606
xref: NIF_GrossAnatomy:birnlex_2637
is_a: UBERON:0002020 ! gray matter of neuraxis
relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve
[Term]
id: UBERON:0002867
name: central gray substance of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2638-FMA_72595
synonym: "medullary central gray substance" EXACT [FMA:72595]
xref: FMA:72595
xref: NIF_GrossAnatomy:birnlex_2638
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002868
name: commissural nucleus of vagus nerve
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2639-FMA_54597
synonym: "commissural nucleus-1" EXACT [FMA:54597]
synonym: "nucleus of inferior commissure" EXACT [FMA:54597]
xref: FMA:54597
xref: NIF_GrossAnatomy:birnlex_2639
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002869
name: diffuse reticular nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2641-FMA_72598
synonym: "nucleus of Kolliker-Fuse" EXACT [FMA:72598]
synonym: "nucleus of kolliker-fuse" EXACT []
xref: FMA:72598
xref: NIF_GrossAnatomy:birnlex_2641
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002870
name: dorsal motor nucleus of vagus nerve
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2642-FMA_54592
def: "." [Wikipedia:Dorsal_motor_nucleus_of_vagus_nerve]
subset: uberon_slim
synonym: "dorsal efferent nucleus of vagus" EXACT [FMA:54592]
xref: FMA:54592
xref: NIF_GrossAnatomy:birnlex_2642
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002871
name: hypoglossal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2644-FMA_54505
def: "." [Wikipedia:Hypoglossal_nucleus]
subset: uberon_slim
synonym: "hypoglossal nucleus" EXACT [FMA:54505]
synonym: "nucleus of hypoglossal nerve" EXACT [FMA:54505]
synonym: "twelfth cranial nerve nucleus" EXACT [FMA:54505]
xref: FMA:54505
xref: NIF_GrossAnatomy:birnlex_2644
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002872
name: inferior salivatory nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2645-FMA_72601
def: "." [Wikipedia:Inferior_salivatory_nucleus]
subset: uberon_slim
synonym: "inferior salivary nucleus" EXACT []
xref: FMA:72601
xref: NIF_GrossAnatomy:birnlex_2645
is_a: UBERON:0000126 ! implied link automatically realized ! cranial nerve nucleus
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001649 ! glossopharyngeal nerve
[Term]
id: UBERON:0002873
name: interpolar part of spinal trigeminal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2646-FMA_235324
xref: FMA:235324
xref: NIF_GrossAnatomy:birnlex_2646
is_a: UBERON:0002020 ! gray matter of neuraxis
relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve
[Term]
id: UBERON:0002874
name: lateral pericuneate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2647-FMA_72604
xref: FMA:72604
xref: NIF_GrossAnatomy:birnlex_2647
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002875
name: medial pericuneate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2648-FMA_72605
xref: FMA:72605
xref: NIF_GrossAnatomy:birnlex_2648
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002876
name: nucleus intercalatus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2651-FMA_72597
synonym: "intercalated nucleus of medulla" EXACT [FMA:72597]
synonym: "nucleus intercalatus of medulla" EXACT [FMA:72597]
synonym: "nucleus of Staderini" EXACT [FMA:72597]
synonym: "nucleus of staderini" EXACT []
xref: FMA:72597
xref: NIF_GrossAnatomy:birnlex_2651
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002877
name: parasolitary nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2653-FMA_77091
xref: FMA:77091
xref: NIF_GrossAnatomy:birnlex_2653
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002878
name: nucleus intercalatus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2654-FMA_72597
synonym: "intercalated nucleus of medulla" EXACT [FMA:72597]
synonym: "nucleus intercalatus of medulla" EXACT [FMA:72597]
synonym: "nucleus of Staderini" EXACT [FMA:72597]
synonym: "nucleus of staderini" EXACT []
xref: FMA:72597
xref: NIF_GrossAnatomy:birnlex_2654
is_a: UBERON:0002308 ! nucleus of brain
intersection_of: UBERON:0002308 ! nucleus of brain
intersection_of: part_of UBERON:0000958 ! medulla
[Term]
id: UBERON:0002879
name: peritrigeminal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2655-FMA_72600
xref: FMA:72600
xref: NIF_GrossAnatomy:birnlex_2655
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002880
name: pontobulbar nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2656-FMA_72608
synonym: "nucleus of circumolivary bundle" EXACT [FMA:72608]
synonym: "pontobulbar body" EXACT [FMA:72608]
xref: FMA:72608
xref: NIF_GrossAnatomy:birnlex_2656
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002881
name: sublingual nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2657-FMA_68574
def: "." [Wikipedia:Sublingual_nucleus]
subset: uberon_slim
synonym: "nucleus of Roller" EXACT [FMA:68574]
synonym: "nucleus of roller" EXACT []
xref: FMA:68574
xref: NIF_GrossAnatomy:birnlex_2657
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002882
name: supraspinal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2658-FMA_74507
xref: FMA:74507
xref: NIF_GrossAnatomy:birnlex_2658
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002883
name: central amygdaloid nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2682-FMA_74047
synonym: "central nucleus of amygdala" EXACT [FMA:74047]
xref: BTO:0002686
xref: FMA:74047
xref: NIF_GrossAnatomy:birnlex_2682
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002884
name: intercalated amygdaloid nuclei
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2683-FMA_61868
synonym: "intercalated amygdaloid nuclei" EXACT [FMA:61868]
synonym: "intercalated masses of nucleus amygdaloideus" EXACT [FMA:61868]
synonym: "intercalated nuclei of amygdala" EXACT [FMA:61868]
xref: FMA:61868
xref: NIF_GrossAnatomy:birnlex_2683
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002885
name: accessory basal amygdaloid nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2686-FMA_61867
xref: FMA:61867
xref: NIF_GrossAnatomy:birnlex_2686
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002886
name: lateral amygdaloid nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2687-FMA_61866
synonym: "lateral nucleus of amygdala" EXACT [FMA:61866]
synonym: "lateral principal nucleus of amygdala" EXACT [FMA:61866]
xref: BTO:0002704
xref: FMA:61866
xref: NIF_GrossAnatomy:birnlex_2687
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002887
name: basal amygdaloid nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2692-FMA_68855
synonym: "basolateral amygdaloid nucleus" EXACT [FMA:68855]
synonym: "basolateral nucleus (De Olmos)" EXACT [FMA:68855]
synonym: "basolateral nucleus (de olmos)" EXACT []
synonym: "intermediate principal nucleus" EXACT [FMA:68855]
xref: FMA:68855
xref: NIF_GrossAnatomy:birnlex_2692
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002888
name: lateral part of basal amygdaloid nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2695-FMA_68857
synonym: "lateral basal nucleus of the amygdala" EXACT [FMA:68857]
synonym: "lateral division of the basal nucleus" EXACT [FMA:68857]
xref: FMA:68857
xref: NIF_GrossAnatomy:birnlex_2695
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002889
name: medial part of basal amygdaloid nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2696-FMA_68858
synonym: "basomedial amygdaloid nucleus" EXACT [FMA:68858]
synonym: "medial basal nucleus of amygdala" EXACT [FMA:68858]
synonym: "medial division of basal nucleus" EXACT [FMA:68858]
xref: FMA:68858
xref: NIF_GrossAnatomy:birnlex_2696
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002890
name: anterior amygdaloid area
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2698-FMA_61861
xref: FMA:61861
xref: NIF_GrossAnatomy:birnlex_2698
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002891
name: cortical amygdaloid nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2700-FMA_61862
synonym: "posterior cortical nucleus of amygdala" EXACT [FMA:61862]
xref: BTO:0002703
xref: FMA:61862
xref: NIF_GrossAnatomy:birnlex_2700
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002892
name: medial amygdaloid nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2701-FMA_74046
synonym: "medial nucleus of amygdala" EXACT [FMA:74046]
xref: BTO:0002702
xref: FMA:74046
xref: NIF_GrossAnatomy:birnlex_2701
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002893
name: nucleus of lateral olfactory tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2702-FMA_61865
synonym: "lateral olfactory tract nucleus" EXACT [FMA:61865]
xref: FMA:61865
xref: NIF_GrossAnatomy:birnlex_2702
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
relationship: part_of UBERON:0001876 ! amygdala
[Term]
id: UBERON:0002894
name: olfactory cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2707-MA_0000193
def: "The olfactory cortex is involved in the perception of smell. It receives input from the olfactory bulb and is responsible for the identification of odors[GO]." [Wikipedia:Olfactory_cortex]
subset: uberon_slim
synonym: "olfactory lobe" RELATED [MA:0000193]
xref: BTO:0001446
xref: EHDAA:5482
xref: HOG:0000325
xref: MA:0000193
xref: NIF_GrossAnatomy:birnlex_2707
is_a: UBERON:0002616 ! regional part of brain
[Term]
id: UBERON:0002895
name: secondary olfactory cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_2709-FMA_72356
def: "." [Wikipedia:Entorhinal_cortex]
subset: uberon_slim
synonym: "area 28 of Brodmann (Crosby)" EXACT [FMA:72356]
synonym: "area 28 of brodmann (crosby)" EXACT []
synonym: "entorhinal cortex" EXACT [FMA:72356]
synonym: "secondary olfactory cortex" EXACT [FMA:72356]
synonym: "secondary olfactory cortical area (Carpenter)" EXACT [FMA:72356]
synonym: "secondary olfactory cortical area (carpenter)" EXACT []
xref: EFO:0001920
xref: FMA:72356
xref: NIF_GrossAnatomy:birnlex_2709
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002896
name: telodiencephalic fissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4001-FMA_83726
synonym: "telo-diencephalic fissure" EXACT [FMA:83726]
xref: FMA:83726
xref: NIF_GrossAnatomy:birnlex_4001
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002897
name: cistern of lamina terminalis
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4002-FMA_74516
synonym: "lamina terminalis cistern" EXACT [FMA:74516]
xref: FMA:74516
xref: ncithesaurus:Lamina_Terminalis_Cistern
xref: NIF_GrossAnatomy:birnlex_4002
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002898
name: chiasmatic cistern
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4003-FMA_74515
def: "." [Wikipedia:Chiasmatic_cistern]
subset: uberon_slim
xref: FMA:74515
xref: ncithesaurus:Chiasmatic_Cistern
xref: NIF_GrossAnatomy:birnlex_4003
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002899
name: hippocampal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4004-FMA_83747
def: "." [Wikipedia:Hippocampal_sulcus]
subset: uberon_slim
synonym: "dentate fissure" EXACT [FMA:83747]
synonym: "hippocampal fissure" EXACT [FMA:83747]
xref: FMA:83747
xref: ncithesaurus:Hippocampal_Fissure
xref: NIF_GrossAnatomy:birnlex_4004
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002900
name: transverse occipital sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4013-FMA_83786
xref: BTO:0003786
xref: FMA:83786
xref: NIF_GrossAnatomy:birnlex_4013
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002901
name: posterior calcarine sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4015-FMA_83787
synonym: "postcalcarine sulcus" EXACT [FMA:83787]
synonym: "posterior calcarine fissure" EXACT [FMA:83787]
synonym: "posterior part of calcarine sulcus" EXACT [FMA:83787]
xref: FMA:83787
xref: NIF_GrossAnatomy:birnlex_4015
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002902
name: occipital pole
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4016-FMA_74892
def: "." [Wikipedia:Occipital_pole]
subset: uberon_slim
xref: BTO:0001868
xref: FMA:74892
xref: NIF_GrossAnatomy:birnlex_4016
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002903
name: lunate sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4017-FMA_83788
synonym: "lunate fissure" EXACT [FMA:83788]
xref: FMA:83788
xref: ncithesaurus:Lunate_Sulcus
xref: NIF_GrossAnatomy:birnlex_4017
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002904
name: lateral occipital sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4018-FMA_83785
def: "." [Wikipedia:Lateral_occipital_sulcus]
subset: uberon_slim
xref: FMA:83785
xref: ncithesaurus:Lateral-occipital_Sulcus
xref: NIF_GrossAnatomy:birnlex_4018
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002905
name: intralingual sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4019-FMA_83789
xref: FMA:83789
xref: NIF_GrossAnatomy:birnlex_4019
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002906
name: anterior occipital sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4023-FMA_75758
xref: FMA:75758
xref: NIF_GrossAnatomy:birnlex_4023
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002907
name: superior postcentral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4025-FMA_83775
synonym: "postcentral dimple" EXACT [FMA:83775]
xref: FMA:83775
xref: NIF_GrossAnatomy:birnlex_4025
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002908
name: subparietal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4026-FMA_83777
synonym: "splenial sulcus" EXACT [FMA:83777]
synonym: "suprasplenial sulcus" EXACT [FMA:83777]
xref: FMA:83777
xref: NIF_GrossAnatomy:birnlex_4026
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002909
name: posterior subcentral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4027-FMA_83778
xref: FMA:83778
xref: NIF_GrossAnatomy:birnlex_4027
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002910
name: posterior ascending limb of lateral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4028-FMA_83761
synonym: "ascending terminal ramus of Sylvian fissure" EXACT [FMA:83761]
synonym: "ascending terminal ramus of sylvian fissure" EXACT []
synonym: "posterior ascending limb of lateral fissure" EXACT [FMA:83761]
synonym: "posterior ramus of lateral cerebral sulcus" EXACT [FMA:83761]
xref: FMA:83761
xref: NIF_GrossAnatomy:birnlex_4028
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002911
name: parietal operculum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4029-FMA_74889
def: "." [Wikipedia:Parietal_operculum]
subset: uberon_slim
xref: FMA:74889
xref: NIF_GrossAnatomy:birnlex_4029
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002912
name: marginal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4030-FMA_83773
def: "." [Wikipedia:Marginal_sulcus]
subset: uberon_slim
synonym: "marginal branch of cingulate sulcus" EXACT [FMA:83773]
synonym: "marginal ramus of cingulate sulcus" EXACT [FMA:83773]
xref: FMA:83773
xref: NIF_GrossAnatomy:birnlex_4030
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002913
name: intraparietal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4031-FMA_83772
def: "." [Wikipedia:Intraparietal_sulcus]
subset: uberon_slim
synonym: "interparietal fissure" EXACT [FMA:83772]
synonym: "intraparietal fissure" EXACT [FMA:83772]
xref: BTO:0003787
xref: FMA:83772
xref: ncithesaurus:Intraparietal_Sulcus
xref: NIF_GrossAnatomy:birnlex_4031
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002914
name: inferior postcentral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4032-FMA_83776
xref: FMA:83776
xref: NIF_GrossAnatomy:birnlex_4032
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002915
name: postcentral sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4033-FMA_83774
def: "." [Wikipedia:Postcentral_sulcus]
subset: uberon_slim
synonym: "postcentral fissure of cerebral hemisphere" EXACT [FMA:83774]
synonym: "postcentral fissure-1" EXACT [FMA:83774]
xref: FMA:83774
xref: ncithesaurus:Postcentral_Sulcus
xref: NIF_GrossAnatomy:birnlex_4033
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002916
name: central sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4035-FMA_83752
def: "." [Wikipedia:Central_sulcus]
subset: uberon_slim
synonym: "central cerebral sulcus" EXACT [FMA:83752]
synonym: "central fissure" EXACT [FMA:83752]
synonym: "central sulcus of Rolando" EXACT [FMA:83752]
synonym: "central sulcus of rolando" EXACT []
synonym: "fissure of Rolando" EXACT [FMA:83752]
synonym: "fissure of rolando" EXACT []
synonym: "sulcus of Rolando" EXACT [FMA:83752]
synonym: "sulcus of rolando" EXACT []
xref: FMA:83752
xref: ncithesaurus:Central_Sulcus_of_Rolando
xref: NIF_GrossAnatomy:birnlex_4035
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002917
name: regional part of inferior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4036-FMA_77871
synonym: "inferior colliculus segment" EXACT [FMA:77871]
synonym: "segment of inferior colliculus" EXACT [NIF_GrossAnatomy:birnlex_4036]
xref: FMA:77871
xref: NIF_GrossAnatomy:birnlex_4036
is_a: UBERON:0002966 ! regional part of midbrain tectum
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0002918
name: medial parabrachial nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4038-FMA_72480
def: "." [Wikipedia:Medial_parabrachial_nucleus]
subset: uberon_slim
xref: FMA:72480
xref: NIF_GrossAnatomy:birnlex_4038
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002919
name: anterior parolfactory sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4039-FMA_83744
synonym: "paraolfactory sulcus" EXACT [FMA:83744]
xref: FMA:83744
xref: NIF_GrossAnatomy:birnlex_4039
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002920
name: callosal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4040-FMA_83743
def: "." [Wikipedia:Callosal_sulcus]
subset: uberon_slim
synonym: "sulcus of corpus callosum" EXACT [FMA:83743]
xref: FMA:83743
xref: NIF_GrossAnatomy:birnlex_4040
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002921
name: longitudinal fissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4041-FMA_83727
def: "." [Wikipedia:Longitudinal_fissure]
subset: uberon_slim
synonym: "hemispheric sulcus" EXACT [FMA:83727]
synonym: "interhemispheric fissure" EXACT [FMA:83727]
synonym: "longitudinal cerebral fissure" EXACT [FMA:83727]
synonym: "longitudinal sulcus" EXACT [FMA:83727]
synonym: "medial longitudinal fissure" EXACT [FMA:83727]
synonym: "sagittal fissure" EXACT [FMA:83727]
xref: FMA:83727
xref: ncithesaurus:Longitudinal_Fissure
xref: NIF_GrossAnatomy:birnlex_4041
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0002922
name: olfactory trigone
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4042-FMA_74883
def: "." [Wikipedia:Olfactory_trigone]
subset: uberon_slim
xref: FMA:74883
xref: NIF_GrossAnatomy:birnlex_4042
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002923
name: posterior parolfactory sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4043-FMA_83745
xref: FMA:83745
xref: NIF_GrossAnatomy:birnlex_4043
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002924
name: terminal nerve
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4044-ZFA_0001356
def: "." [Wikipedia:Terminal_nerve]
subset: uberon_slim
synonym: "nervus terminalis" EXACT [ZFA:0001356]
xref: NIF_GrossAnatomy:birnlex_4044
xref: ZFA:0001356
is_a: UBERON:0001785 ! cranial nerve
[Term]
id: UBERON:0002925
name: trigeminal nuclear complex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4096-FMA_71248
def: "." [Wikipedia:Trigeminal_nuclei]
subset: uberon_slim
synonym: "trigeminal nuclei" EXACT [FMA:71248]
xref: FMA:71248
xref: NIF_GrossAnatomy:birnlex_4096
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002926
name: gustatory epithelium
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4099-FMA_62412
xref: FMA:62412
xref: NIF_GrossAnatomy:birnlex_4099
is_a: UBERON:0000488 ! atypical epithelium
[Term]
id: UBERON:0002927
name: circumvallate papilla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4106_2-MA_0001594
def: "." [Wikipedia:Circumvallate_papilla]
subset: uberon_slim
xref: MA:0001594
xref: ncithesaurus:Circumvallate_Papilla
xref: NIF_GrossAnatomy:birnlex_4106_2
is_a: UBERON:0001726 ! papilla of tongue
[Term]
id: UBERON:0002928
name: dentate gyrus polymorphic layer
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4128-MA_0002864
xref: MA:0002864
xref: NIF_GrossAnatomy:birnlex_4128
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002304 ! layer of dentate gyrus
[Term]
id: UBERON:0002929
name: dentate gyrus pyramidal layer
alt_id: UBERON:NIF_GrossAnatomy_birnlex_4129-MA_0000948
xref: MA:0000948
xref: NIF_GrossAnatomy:birnlex_4129
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002304 ! layer of dentate gyrus
[Term]
id: UBERON:0002930
name: tectopontine tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_701-FMA_72505
synonym: "tectopontine fibers" EXACT [FMA:72505]
synonym: "tectopontine fibres" EXACT [FMA:72505]
xref: FMA:72505
xref: NIF_GrossAnatomy:birnlex_701
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002931
name: dorsal septal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_704-FMA_61877
xref: FMA:61877
xref: NIF_GrossAnatomy:birnlex_704
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002932
name: trapezoid body
alt_id: UBERON:NIF_GrossAnatomy_birnlex_707-FMA_72487
def: "." [Wikipedia:Trapezoid_body]
subset: uberon_slim
xref: FMA:72487
xref: NIF_GrossAnatomy:birnlex_707
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002933
name: nucleus of anterior commissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_712-FMA_61883
synonym: "anterior commissure nucleus" EXACT [FMA:61883]
synonym: "bed nucleus of anterior commissure" EXACT [FMA:61883]
synonym: "nucleus of commissura anterior" EXACT [FMA:61883]
xref: FMA:61883
xref: NIF_GrossAnatomy:birnlex_712
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002934
name: ventral oculomotor nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_713-FMA_72422
synonym: "ventral oculomotor cell column" EXACT [FMA:72422]
xref: FMA:72422
xref: NIF_GrossAnatomy:birnlex_713
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002935
name: magnocellular part of ventral anterior nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_716-FMA_62192
synonym: "magnocellular division of ventral anterior nucleus of thalamus" EXACT [FMA:62192]
synonym: "ventral anterior nucleus, magnocellular part" EXACT [FMA:62192]
synonym: "ventral anterior nucleus, pars magnocellularis" EXACT [FMA:62192]
synonym: "ventral anterior thalamic nucleus, magnocellular part" EXACT [FMA:62192]
xref: FMA:62192
xref: NIF_GrossAnatomy:birnlex_716
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002936
name: magnocellular part of red nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_720-FMA_72431
synonym: "paleoruber" EXACT [FMA:72431]
synonym: "red nucleus, magnocellular part" EXACT [FMA:72431]
xref: FMA:72431
xref: NIF_GrossAnatomy:birnlex_720
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001947 ! red nucleus
[Term]
id: UBERON:0002937
name: parvicellular part of ventral anterior nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_722-FMA_62191
synonym: "ventral anterior nucleus, pars parvicellularis" EXACT [FMA:62191]
synonym: "ventral anterior thalamic nucleus, parvicellular part" EXACT [FMA:62191]
synonym: "ventralis anterior (Jones)" EXACT [FMA:62191]
synonym: "ventralis anterior (jones)" EXACT []
xref: FMA:62191
xref: NIF_GrossAnatomy:birnlex_722
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002938
name: parvocellular part of red nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_725-FMA_72430
synonym: "neoruber" EXACT [FMA:72430]
synonym: "red nucleus, parvocellular part" EXACT [FMA:72430]
xref: FMA:72430
xref: NIF_GrossAnatomy:birnlex_725
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001947 ! red nucleus
[Term]
id: UBERON:0002939
name: ventral posteroinferior nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_728-FMA_62199
synonym: "ventral posterior inferior nucleus" EXACT [FMA:62199]
synonym: "ventral posterior inferior nucleus of thalamus" EXACT [FMA:62199]
synonym: "ventral posterior inferior thalamic nucleus" EXACT [FMA:62199]
xref: FMA:62199
xref: NIF_GrossAnatomy:birnlex_728
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002940
name: anterior column of fornix
alt_id: UBERON:NIF_GrossAnatomy_birnlex_731-FMA_61966
synonym: "anterior crus of fornix" EXACT [FMA:61966]
synonym: "anterior pillar of fornix" EXACT [FMA:61966]
xref: FMA:61966
xref: NIF_GrossAnatomy:birnlex_731
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002941
name: capsule of red nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_732-FMA_72450
synonym: "red nuclear capsule" EXACT [FMA:72450]
xref: FMA:72450
xref: NIF_GrossAnatomy:birnlex_732
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001947 ! red nucleus
[Term]
id: UBERON:0002942
name: ventral posterolateral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_737-FMA_62200
def: "." [Wikipedia:Ventral_posterolateral_nucleus]
subset: uberon_slim
synonym: "posterolateral ventral nucleus of thalamus" EXACT [FMA:62200]
synonym: "ventral posterolateral nucleus of thalamus" EXACT [FMA:62200]
synonym: "ventral posterolateral thalamic nucleus" EXACT [FMA:62200]
xref: FMA:62200
xref: NIF_GrossAnatomy:birnlex_737
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002943
name: lingual gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_740-FMA_61904
def: "." [Wikipedia:Lingual_gyrus]
subset: uberon_slim
synonym: "lingula of cerebral hemisphere" EXACT [FMA:61904]
synonym: "medial occipitotemporal gyrus" EXACT [FMA:61904]
synonym: "medial occipitotemporal gyrus-2" EXACT [FMA:61904]
xref: FMA:61904
xref: NIF_GrossAnatomy:birnlex_740
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0002021 ! occipital lobe
[Term]
id: UBERON:0002944
name: spinothalamic tract of medulla
alt_id: UBERON:NIF_GrossAnatomy_birnlex_741-FMA_72644
def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the spinal cord towards target cells in the thalamus. This axonal process is a member of those that make up the spinothalamic tract, one of the major routes of nociceptive signaling[GO]." [Wikipedia:Spinothalamic_tract]
subset: uberon_slim
synonym: "spinothalamic tract" EXACT [FMA:72644]
xref: FMA:72644
xref: NIF_GrossAnatomy:birnlex_741
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002945
name: ventral posteromedial nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_743-FMA_62202
def: "." [Wikipedia:Ventral_posteromedial_nucleus]
subset: uberon_slim
synonym: "arcuate nucleus of thalamus" EXACT [FMA:62202]
synonym: "arcuate nucleus-3" EXACT [FMA:62202]
synonym: "posteromedial ventral nucleus of thalamus" EXACT [FMA:62202]
synonym: "semilunar nucleus" EXACT [FMA:62202]
synonym: "thalamic gustatory nucleus" EXACT [FMA:62202]
synonym: "ventral posterior medial nucleus" EXACT [FMA:62202]
synonym: "ventral posteromedial nucleus of thalamus" EXACT [FMA:62202]
xref: FMA:62202
xref: NIF_GrossAnatomy:birnlex_743
is_a: UBERON:0001932 ! implied link automatically realized ! arcuate nucleus of hypothalamus
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
intersection_of: UBERON:0001932 ! arcuate nucleus of hypothalamus
intersection_of: part_of UBERON:0001897 ! thalamus
[Term]
id: UBERON:0002946
name: regional part of cerebellum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_748-FMA_256150
synonym: "segment of cerebellum" EXACT [NIF_GrossAnatomy:birnlex_748]
xref: FMA:256150
xref: NIF_GrossAnatomy:birnlex_748
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002680 ! regional part of metencephalon
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0002947
name: frontal operculum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_751-FMA_74886
xref: FMA:74886
xref: NIF_GrossAnatomy:birnlex_751
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002948
name: superior occipital gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_758-FMA_61901
synonym: "gyrus occipitalis primus" EXACT [FMA:61901]
xref: FMA:61901
xref: NIF_GrossAnatomy:birnlex_758
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0002021 ! occipital lobe
[Term]
id: UBERON:0002949
name: tectospinal tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_759-FMA_72620
def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the superior colliculus of the midbrain towards target cells in the ventral spinal cord[GO]." [Wikipedia:Tectospinal_tract]
subset: uberon_slim
synonym: "held's bundle" EXACT [FMA:72620]
synonym: "tectospinal pathway" EXACT [FMA:72620]
xref: FMA:72620
xref: NIF_GrossAnatomy:birnlex_759
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002950
name: regional part of midbrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_763-FMA_61997
synonym: "midbrain segment" EXACT [FMA:61997]
synonym: "segment of midbrain" EXACT [NIF_GrossAnatomy:birnlex_763]
xref: FMA:61997
xref: NIF_GrossAnatomy:birnlex_763
is_a: UBERON:0002616 ! regional part of brain
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0002951
name: regional part of intermediate hypothalamic region
alt_id: UBERON:NIF_GrossAnatomy_birnlex_767-FMA_62310
synonym: "intermediate hypothalamic region segment" EXACT [FMA:62310]
synonym: "segment of intermediate hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_767]
xref: FMA:62310
xref: NIF_GrossAnatomy:birnlex_767
is_a: UBERON:0003048 ! regional part of hypothalamus
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002555 ! intermediate hypothalamic region
[Term]
id: UBERON:0002952
name: intermediate acoustic stria
alt_id: UBERON:NIF_GrossAnatomy_birnlex_768-FMA_72497
synonym: "commissure of Held" EXACT [FMA:72497]
synonym: "commissure of held" EXACT []
synonym: "intermediate acoustic stria of Held" EXACT [FMA:72497]
synonym: "intermediate acoustic stria of held" EXACT []
xref: FMA:72497
xref: NIF_GrossAnatomy:birnlex_768
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002953
name: lateral lemniscus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_774-FMA_72502
def: "." [Wikipedia:Lateral_lemniscus]
subset: uberon_slim
synonym: "lateral fillet" EXACT [FMA:72502]
xref: FMA:72502
xref: NIF_GrossAnatomy:birnlex_774
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002954
name: dorsal hypothalamic area
alt_id: UBERON:NIF_GrossAnatomy_birnlex_777-FMA_62339
xref: FMA:62339
xref: NIF_GrossAnatomy:birnlex_777
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002955
name: rhomboidal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_778-FMA_62154
synonym: "rhomboid nucleus" EXACT [FMA:62154]
synonym: "rhomboid thalamic nucleus" EXACT [FMA:62154]
xref: BTO:0002458
xref: FMA:62154
xref: NIF_GrossAnatomy:birnlex_778
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002956
name: granular layer of cerebellar cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_779-FMA_83140
xref: FMA:83140
xref: NIF_GrossAnatomy:birnlex_779
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002957
name: caudal central oculomotor nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_780-FMA_72426
synonym: "caudal central nucleus" EXACT [FMA:72426]
synonym: "caudal central nucleus of oculomotor nerve" EXACT [FMA:72426]
xref: FMA:72426
xref: NIF_GrossAnatomy:birnlex_780
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002958
name: medial lemniscus of pons
alt_id: UBERON:NIF_GrossAnatomy_birnlex_781-FMA_72503
xref: FMA:72503
xref: NIF_GrossAnatomy:birnlex_781
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
is_a: UBERON:0003002 ! medial lemniscus
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
intersection_of: UBERON:0003002 ! medial lemniscus
intersection_of: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0002959
name: subfascicular nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_783-FMA_62155
xref: FMA:62155
xref: NIF_GrossAnatomy:birnlex_783
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002960
name: central oculomotor nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_786-FMA_72425
synonym: "central nucleus of Perlia" EXACT [FMA:72425]
synonym: "central nucleus of perlia" EXACT []
synonym: "nucleus of Perlia" EXACT [FMA:72425]
synonym: "nucleus of perlia" EXACT []
synonym: "spitzka's nucleus" EXACT [FMA:72425]
xref: FMA:72425
xref: NIF_GrossAnatomy:birnlex_786
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002961
name: archicortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_787-FMA_62424
def: "A portion of the cerebral cortex that, with the paleocortex, develops in association with the olfactory system, and which is phylogenetically older than the neocortex and lacks its layered structure. The embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus in mature mammals. Being part of the limbic system, it has functions related to emotions and formation of memory. Signals being sent from the limbic lobe to the hippocampal formations can go via the archicortex as an intermediate." [Wikipedia:Archicortex]
subset: uberon_slim
synonym: "archipallium" EXACT [FMA:62424]
xref: FMA:62424
xref: NIF_GrossAnatomy:birnlex_787
is_a: UBERON:0003208
[Term]
id: UBERON:0002962
name: microtubule
alt_id: UBERON:NIF_GrossAnatomy_birnlex_788-FMA_63849
def: "." [Wikipedia:Microtubule]
subset: uberon_slim
synonym: "microtubulus" EXACT [FMA:63849]
xref: FMA:63849
xref: GO:0005874
xref: ncithesaurus:Microtubule
xref: NIF_GrossAnatomy:birnlex_788
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0002963
name: caudal pontine reticular nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_792-FMA_72469
def: "." [Wikipedia:Caudal_pontine_reticular_nucleus]
subset: uberon_slim
synonym: "pontine reticular nucleus, caudal part" EXACT [FMA:72469]
xref: FMA:72469
xref: NIF_GrossAnatomy:birnlex_792
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002964
name: dorsal oculomotor nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_793-FMA_62442
synonym: "dorsal oculomotor cell column" EXACT [FMA:62442]
xref: FMA:62442
xref: NIF_GrossAnatomy:birnlex_793
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002965
name: rostral intralaminar nuclei
alt_id: UBERON:NIF_GrossAnatomy_birnlex_794-FMA_62164
synonym: "rostral intralaminar nuclei" EXACT [FMA:62164]
xref: FMA:62164
xref: NIF_GrossAnatomy:birnlex_794
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002966
name: regional part of midbrain tectum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_795-FMA_62398
synonym: "midbrain tectum segment" EXACT [FMA:62398]
synonym: "segment of midbrain tectum" EXACT [NIF_GrossAnatomy:birnlex_795]
xref: FMA:62398
xref: NIF_GrossAnatomy:birnlex_795
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0002314 ! midbrain tectum
[Term]
id: UBERON:0002967
name: cingulate gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_798-FMA_62434
def: "A gyrus in the medial part of the brain. It partially wraps around the corpus callosum and is limited above by the cingulate sulcus. The cortical part of the cingulate gyrus is referred to as cingulate cortex.[Wikipedia]. The cingulate gyrus receives inputs from the anterior nucleus of the thalamus and the neocortex, as well as from somatosensory areas of the cerebral cortex. It projects to the entorhinal cortex via the cingulum. It functions as an integral part of the limbic system, which is involved with emotion formation and processing, learning, and memory. Also, executive control needed to suppress inappropriate unconscious priming is known to involve the anterior cingulate gyrus. It is also involved in respiratory control." [Wikipedia:Cingulate_gyrus]
subset: uberon_slim
synonym: "cingulate area" EXACT [FMA:62434]
synonym: "cingulate region" EXACT [FMA:62434]
synonym: "falciform lobe" EXACT [FMA:62434]
synonym: "upper limbic gyrus" EXACT [FMA:62434]
xref: BTO:0003976
xref: FMA:62434
xref: NIF_GrossAnatomy:birnlex_798
is_a: UBERON:0000200 ! gyrus
relationship: part_of UBERON:0000349 ! limbic system
[Term]
id: UBERON:0002968
name: central gray substance of pons
alt_id: UBERON:NIF_GrossAnatomy_birnlex_799-FMA_72470
synonym: "central gray of pons" EXACT [FMA:72470]
synonym: "pontine central gray" EXACT [FMA:72470]
xref: FMA:72470
xref: NIF_GrossAnatomy:birnlex_799
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002969
name: inferior temporal sulcus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_800-FMA_83784
synonym: "inferior temporal sulcus-1" EXACT [FMA:83784]
synonym: "middle temporal sulcus (Szikla)" EXACT [FMA:83784]
synonym: "middle temporal sulcus (szikla)" EXACT []
synonym: "second temporal sulcus" EXACT [FMA:83784]
synonym: "sulcus t2" EXACT [FMA:83784]
xref: FMA:83784
xref: ncithesaurus:Inferior_Temporal_Sulcus
xref: NIF_GrossAnatomy:birnlex_800
is_a: UBERON:0000093 ! sulcus
[Term]
id: UBERON:0002970
name: intermediate oculomotor nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_803-FMA_72420
synonym: "intermediate oculomotor cell column" EXACT [FMA:72420]
xref: FMA:72420
xref: NIF_GrossAnatomy:birnlex_803
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002971
name: periolivary nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_804-MA_0002757
xref: MA:0002757
xref: NIF_GrossAnatomy:birnlex_804
is_a: UBERON:0002680 ! regional part of metencephalon
relationship: part_of UBERON:0002128 ! superior olivary complex
[Term]
id: UBERON:0002972
name: centromedian nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_805-FMA_62165
def: "." [Wikipedia:Centromedian_nucleus]
subset: uberon_slim
synonym: "central magnocellular nucleus of thalamus" EXACT [FMA:62165]
synonym: "central nucleus-1" EXACT [FMA:62165]
synonym: "centre median nucleus" EXACT [FMA:62165]
synonym: "centromedian nucleus of thalamus" EXACT [FMA:62165]
synonym: "centromedian thalamic nucleus" EXACT [FMA:62165]
synonym: "noyau centre median of Luys" EXACT [FMA:62165]
synonym: "noyau centre median of luys" EXACT []
xref: FMA:62165
xref: NIF_GrossAnatomy:birnlex_805
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002973
name: parahippocampal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_807-FMA_61918
def: "a grey matter cortical region of the brain that surrounds the hippocampus. This region plays an important role in memory encoding and retrieval. The anterior part of the gyrus includes the perirhinal and entorhinal cortices. The term parahippocampal cortex is used to refer to an area that encompasses both the posterior portion of the parahippocampal gyrus and the medial portion of the fusiform gyrus.[Wikipedia]." [Wikipedia:Parahippocampal_gyrus]
subset: uberon_slim
synonym: "hippocampal gyrus" EXACT [FMA:61918]
xref: FMA:61918
xref: ncithesaurus:Parahippocampal_Gyrus
xref: NIF_GrossAnatomy:birnlex_807
is_a: UBERON:0000200 ! gyrus
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0000349 ! limbic system
relationship: part_of UBERON:0001871 ! temporal lobe
relationship: surrounds UBERON:0001954 ! hippocampus
[Term]
id: UBERON:0002974
name: molecular layer of cerebellar cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_810-FMA_83897
xref: FMA:83897
xref: NIF_GrossAnatomy:birnlex_810
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002975
name: medial oculomotor nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_813-FMA_72421
synonym: "medial oculomotor cell column" EXACT [FMA:72421]
xref: FMA:72421
xref: NIF_GrossAnatomy:birnlex_813
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002976
name: preolivary nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_814-FMA_72474
synonym: "preolivary nuclei" EXACT [FMA:72474]
xref: FMA:72474
xref: NIF_GrossAnatomy:birnlex_814
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0002128 ! superior olivary complex
[Term]
id: UBERON:0002977
name: triangular septal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_816-FMA_61880
synonym: "triangular nucleus of septum" EXACT [FMA:61880]
xref: FMA:61880
xref: NIF_GrossAnatomy:birnlex_816
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002978
name: oral part of ventral lateral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_817-FMA_62193
synonym: "ventral anterior nucleus, pars densicellularis" EXACT [FMA:62193]
synonym: "ventral lateral anterior nucleus" EXACT [FMA:62193]
synonym: "ventral lateral nucleus, oral part" EXACT [FMA:62193]
synonym: "ventral lateral thalamic nucleus, oral part" EXACT [FMA:62193]
xref: FMA:62193
xref: NIF_GrossAnatomy:birnlex_817
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001925 ! ventral lateral nucleus
[Term]
id: UBERON:0002979
name: purkinje cell layer of cerebellar cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_818-FMA_83896
synonym: "purkinje cell layer" EXACT [FMA:83896]
xref: FMA:83896
xref: NIF_GrossAnatomy:birnlex_818
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0002980
name: opercular part of inferior frontal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_823-FMA_61981
synonym: "opercular portion of inferior frontal gyrus" EXACT [FMA:61981]
synonym: "posterior part of inferior frontal gyrus" EXACT [FMA:61981]
xref: FMA:61981
xref: NIF_GrossAnatomy:birnlex_823
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0002981
name: pulvinar
alt_id: UBERON:NIF_GrossAnatomy_birnlex_824-FMA_62178
def: "." [Wikipedia:Pulvinar]
subset: uberon_slim
synonym: "pulvinar nuclei" EXACT [FMA:62178]
synonym: "pulvinar nucleus" EXACT [FMA:62178]
xref: FMA:62178
xref: NIF_GrossAnatomy:birnlex_824
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002982
name: inferior pulvinar nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_830-FMA_62183
xref: FMA:62183
xref: NIF_GrossAnatomy:birnlex_830
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002983
name: lateral posterior nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_835-FMA_62177
synonym: "lateral posterior nucleus of thalamus" EXACT [FMA:62177]
synonym: "lateral posterior thalamic nucleus" EXACT [FMA:62177]
synonym: "laterodorsal nucleus, caudal part" EXACT [FMA:62177]
synonym: "posterior lateral nucleus of thalamus" EXACT [FMA:62177]
xref: FMA:62177
xref: NIF_GrossAnatomy:birnlex_835
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002984
name: lateral dorsal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_838-FMA_62176
synonym: "lateral dorsal nucleus of thalamus" EXACT [FMA:62176]
synonym: "lateral dorsal thalamic nucleus" EXACT [FMA:62176]
synonym: "laterodorsal nucleus, superficial part" EXACT [FMA:62176]
synonym: "laterodorsal thalamic nucleus" EXACT [FMA:62176]
xref: FMA:62176
xref: NIF_GrossAnatomy:birnlex_838
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002985
name: ventral nucleus of medial geniculate body
alt_id: UBERON:NIF_GrossAnatomy_birnlex_845-FMA_62217
synonym: "medial geniculate complex, ventral part" EXACT [FMA:62217]
synonym: "medial geniculate nucleus, ventral part" EXACT [FMA:62217]
synonym: "ventral nucleus of medial geniculate complex" EXACT [FMA:62217]
synonym: "ventral principal nucleus of medial geniculate body" EXACT [FMA:62217]
xref: BTO:0002671
xref: FMA:62217
xref: NIF_GrossAnatomy:birnlex_845
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
relationship: part_of UBERON:0001927 ! medial geniculate body
[Term]
id: UBERON:0002986
name: neurofilament
alt_id: UBERON:NIF_GrossAnatomy_birnlex_846-FMA_63859
def: "." [Wikipedia:Neurofilament]
subset: uberon_slim
synonym: "neuronal intermediate filament" EXACT [FMA:63859]
xref: FMA:63859
xref: GO:0005883
xref: ncithesaurus:Neurofilament
xref: NIF_GrossAnatomy:birnlex_846
is_a: UBERON:0003000 ! intermediate filament
[Term]
id: UBERON:0002987
name: anterior spinocerebellar tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_848-FMA_72642
def: "." [Wikipedia:Anterior_spinocerebellar_tract]
subset: uberon_slim
synonym: "gowers' tract" EXACT [FMA:72642]
synonym: "ventral spinocerebellar tract" EXACT [FMA:72642]
xref: FMA:72642
xref: NIF_GrossAnatomy:birnlex_848
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0002990
name: mammillothalamic tract of hypothalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_855-FMA_62059
xref: FMA:62059
xref: NIF_GrossAnatomy:birnlex_855
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0002991
name: supramammillary commissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_859-FMA_62056
synonym: "commissure of Forel" EXACT [FMA:62056]
synonym: "commissure of forel" EXACT []
synonym: "commissure y" EXACT [FMA:62056]
synonym: "postmammillary decussation" EXACT [FMA:62056]
synonym: "supramammillary decussation" EXACT [FMA:62056]
xref: FMA:62056
xref: NIF_GrossAnatomy:birnlex_859
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0002992
name: paratenial nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_860-FMA_62151
synonym: "parataenial nucleus" EXACT [FMA:62151]
synonym: "paratenial thalamic nucleus" EXACT [FMA:62151]
xref: FMA:62151
xref: NIF_GrossAnatomy:birnlex_860
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002993
name: inferior central nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_861-FMA_72466
def: "." [Wikipedia:Inferior_central_nucleus]
subset: uberon_slim
synonym: "inferior central nucleus (of Roller)" EXACT [FMA:72466]
synonym: "inferior central nucleus (of roller)" EXACT []
synonym: "inferior central nucleus of raphe" EXACT [FMA:72466]
synonym: "inferior central tegmental nucleus" EXACT [FMA:72466]
xref: FMA:72466
xref: NIF_GrossAnatomy:birnlex_861
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002994
name: nucleus of pretectal area
alt_id: UBERON:NIF_GrossAnatomy_birnlex_864-FMA_72401
synonym: "pretectal area nucleus" EXACT [FMA:72401]
xref: FMA:72401
xref: NIF_GrossAnatomy:birnlex_864
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0002995
name: substantia nigra pars lateralis
alt_id: UBERON:NIF_GrossAnatomy_birnlex_866-MA_0001065
xref: MA:0001065
xref: NIF_GrossAnatomy:birnlex_866
is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus
is_a: UBERON:0002950 ! regional part of midbrain
relationship: part_of UBERON:0002038 ! substantia nigra
[Term]
id: UBERON:0002996
name: nucleus of optic tract
alt_id: UBERON:NIF_GrossAnatomy_birnlex_868-FMA_72403
synonym: "large-celled nucleus of optic tract" EXACT [FMA:72403]
synonym: "lentiform nucleus of pretectal area" EXACT [FMA:72403]
synonym: "optic tract nucleus" EXACT [FMA:72403]
xref: FMA:72403
xref: NIF_GrossAnatomy:birnlex_868
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region
is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter
relationship: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0002997
name: nucleus of medial eminence
alt_id: UBERON:NIF_GrossAnatomy_birnlex_870-FMA_72467
synonym: "medial eminence nucleus" EXACT [FMA:72467]
synonym: "nucleus of eminentia teres" EXACT [FMA:72467]
xref: FMA:72467
xref: NIF_GrossAnatomy:birnlex_870
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0002998
name: inferior frontal gyrus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_873-FMA_61860
def: "." [Wikipedia:Inferior_frontal_gyrus]
subset: uberon_slim
synonym: "inferior frontal convolution" EXACT [FMA:61860]
xref: FMA:61860
xref: ncithesaurus:Inferior_Frontal_Convolution
xref: NIF_GrossAnatomy:birnlex_873
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex
relationship: part_of UBERON:0001870 ! frontal lobe
[Term]
id: UBERON:0002999
name: oral pontine reticular nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_875-FMA_72468
def: "." [Wikipedia:Oral_pontine_reticular_nucleus]
subset: uberon_slim
synonym: "pontine reticular nucleus, rostral part" EXACT [FMA:72468]
xref: FMA:72468
xref: NIF_GrossAnatomy:birnlex_875
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003000
name: intermediate filament
alt_id: UBERON:NIF_GrossAnatomy_birnlex_879-FMA_63851
def: "." [Wikipedia:Intermediate_filament]
subset: uberon_slim
xref: FMA:63851
xref: GO:0005882
xref: ncithesaurus:Intermediate_Filament
xref: NIF_GrossAnatomy:birnlex_879
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0003001
name: lemniscus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_881-FMA_76742
def: "." [Wikipedia:Lemniscus]
subset: uberon_slim
xref: FMA:76742
xref: NIF_GrossAnatomy:birnlex_881
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003002
name: medial lemniscus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_887-FMA_83675
def: "." [Wikipedia:Medial_lemniscus]
subset: uberon_slim
xref: FMA:83675
xref: NIF_GrossAnatomy:birnlex_887
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0003003
name: microfilament
alt_id: UBERON:NIF_GrossAnatomy_birnlex_888-FMA_63850
def: "." [Wikipedia:Microfilament]
subset: uberon_slim
synonym: "microfilament" EXACT [FMA:63850]
synonym: "microfilamentum" EXACT [FMA:63850]
xref: FMA:63850
xref: GO:0005884
xref: NIF_GrossAnatomy:birnlex_888
is_a: UBERON:0000470 ! cell part
[Term]
id: UBERON:0003004
name: superior central nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_889-FMA_72465
def: "." [Wikipedia:Superior_central_nucleus]
subset: uberon_slim
synonym: "cell group B8" EXACT [FMA:72465]
synonym: "cell group b8" EXACT []
synonym: "median nucleus of the raphe" EXACT [FMA:72465]
synonym: "median raphe nucleus" EXACT [FMA:72465]
synonym: "superior central nucleus raphe" EXACT [FMA:72465]
synonym: "superior central tegmental nucleus" EXACT [FMA:72465]
xref: FMA:72465
xref: NIF_GrossAnatomy:birnlex_889
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003005
name: dorsal longitudinal fasciculus of midbrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_893-FMA_72453
xref: FMA:72453
xref: NIF_GrossAnatomy:birnlex_893
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus
intersection_of: part_of UBERON:0001891 ! midbrain
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0003006
name: dorsal nucleus of lateral lemniscus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_894-FMA_72483
synonym: "dorsal nucleus of the lateral lemniscus" EXACT [FMA:72483]
synonym: "posterior nucleus of lateral lemniscus" EXACT [FMA:72483]
xref: FMA:72483
xref: NIF_GrossAnatomy:birnlex_894
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003007
name: lateral parabrachial nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_897-FMA_72481
def: "." [Wikipedia:Lateral_parabrachial_nucleus]
subset: uberon_slim
xref: FMA:72481
xref: NIF_GrossAnatomy:birnlex_897
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003008
name: dorsal longitudinal fasciculus of hypothalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_898-FMA_62063
xref: FMA:62063
xref: NIF_GrossAnatomy:birnlex_898
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003045 ! dorsal longitudinal fasciculus
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus
intersection_of: part_of UBERON:0001898 ! hypothalamus
relationship: part_of UBERON:0002430 ! lateral hypothalamic area
[Term]
id: UBERON:0003009
name: dorsal tegmental decussation
alt_id: UBERON:NIF_GrossAnatomy_birnlex_901-FMA_72451
synonym: "dorsal fountain decussation" EXACT [FMA:72451]
synonym: "fountain decussation of Meynert" EXACT [FMA:72451]
synonym: "fountain decussation of meynert" EXACT []
synonym: "meynert's decussation" EXACT [FMA:72451]
synonym: "posterior tegmental decussation" EXACT [FMA:72451]
xref: FMA:72451
xref: NIF_GrossAnatomy:birnlex_901
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0003010
name: lateral pes lemniscus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_902-FMA_72459
synonym: "deep pes lemniscus" EXACT [FMA:72459]
synonym: "lateral pontine bundle" EXACT [FMA:72459]
synonym: "laterale Haubenfussschleife" EXACT [FMA:72459]
synonym: "laterale haubenfussschleife" EXACT []
synonym: "laterale pontine Buendel" EXACT [FMA:72459]
synonym: "laterale pontine buendel" EXACT []
xref: FMA:72459
xref: NIF_GrossAnatomy:birnlex_902
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0003011
name: facial motor nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_903-FMA_54582
def: "." [Wikipedia:Facial_motor_nucleus]
subset: uberon_slim
synonym: "branchiomotor nucleus of facial nerve" EXACT [FMA:54582]
synonym: "facial motor nucleus" EXACT [FMA:54582]
synonym: "facial nucleus" RELATED [Wikipedia:Facial_nucleus]
synonym: "motor nucleus of VII" EXACT [FMA:54582]
synonym: "motor nucleus of vii" EXACT []
xref: FMA:54582
xref: NIF_GrossAnatomy:birnlex_903
xref: ZFA:0000206
is_a: UBERON:0000127 ! facial nucleus
[Term]
id: UBERON:0003012
name: flocculonodular lobe
alt_id: UBERON:NIF_GrossAnatomy_birnlex_904-FMA_72253
def: "." [Wikipedia:Flocculonodular_lobe]
subset: uberon_slim
synonym: "flocculonodular lobe" EXACT [FMA:72253]
synonym: "posterior lobe-2 of cerebellum" EXACT [FMA:72253]
xref: FMA:72253
xref: NIF_GrossAnatomy:birnlex_904
is_a: UBERON:0000477 ! anatomical cluster
is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex
relationship: part_of UBERON:0002129 ! cerebellar cortex
[Term]
id: UBERON:0003013
name: alar central lobule
alt_id: UBERON:NIF_GrossAnatomy_birnlex_907-FMA_72517
def: "." [Wikipedia:Alar_central_lobule]
subset: uberon_slim
synonym: "alae of central lobule" EXACT [FMA:72517]
synonym: "lobules II, III of vermis" EXACT [FMA:72517]
synonym: "lobules ii, iii of vermis" EXACT []
xref: FMA:72517
xref: NIF_GrossAnatomy:birnlex_907
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003014
name: tuberal part of hypophysis
alt_id: UBERON:NIF_GrossAnatomy_birnlex_912-FMA_74635
synonym: "infundibular stem of neurohypophysis" EXACT [FMA:74635]
synonym: "infundibulum of pituitary gland" EXACT [FMA:74635]
synonym: "infundibulum of posterior lobe of pituitary gland" EXACT [FMA:74635]
synonym: "neurohypophysis infundibulum" EXACT [FMA:74635]
synonym: "tuberal part of hypophysis" EXACT [FMA:74635]
xref: FMA:74635
xref: NIF_GrossAnatomy:birnlex_912
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0003015
name: anterior quadrangular lobule
alt_id: UBERON:NIF_GrossAnatomy_birnlex_913-FMA_72516
synonym: "anterior crescentic lobule of cerebellum" EXACT [FMA:72516]
synonym: "anterior quadrangular lobule of cerebellum" EXACT [FMA:72516]
synonym: "anterior quadrangular lobule of cerebellum [H IV et V]" EXACT [FMA:72516]
synonym: "anterior quadrangular lobule of cerebellum [h iv et v]" EXACT []
synonym: "anterior semilunar lobule" EXACT [FMA:72516]
synonym: "semilunar lobule-1 (anterior)" EXACT [FMA:72516]
xref: FMA:72516
xref: NIF_GrossAnatomy:birnlex_913
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003016
name: postcommissural fornix
alt_id: UBERON:NIF_GrossAnatomy_birnlex_914-FMA_62062
xref: FMA:62062
xref: NIF_GrossAnatomy:birnlex_914
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
relationship: part_of UBERON:0002430 ! lateral hypothalamic area
[Term]
id: UBERON:0003017
name: substantia innominata
alt_id: UBERON:NIF_GrossAnatomy_birnlex_915-FMA_61885
def: "." [Wikipedia:Substantia_innominata]
subset: uberon_slim
synonym: "innominate substance" EXACT [FMA:61885]
synonym: "nucleus of substantia innominata" EXACT [FMA:61885]
xref: BTO:0002447
xref: FMA:61885
xref: NIF_GrossAnatomy:birnlex_915
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003018
name: parvicellular part of ventral posteromedial nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_917-FMA_62207
synonym: "gustatory thalamic nucleus" EXACT [FMA:62207]
synonym: "parvicellular part of ventral posteromedial nucleus of thalamus" EXACT [FMA:62207]
synonym: "ventral posteromedial nucleus of thalamus, parvicellular part" EXACT [FMA:62207]
synonym: "ventral posteromedial nucleus, parvocellular part" EXACT [FMA:62207]
synonym: "ventral posteromedial thalamic nucleus, parvicellular part" EXACT [FMA:62207]
xref: FMA:62207
xref: NIF_GrossAnatomy:birnlex_917
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0003019
name: oral part of ventral posterolateral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_918-FMA_62205
synonym: "ventral part of ventral lateral posterior nucleus (Jones)" EXACT [FMA:62205]
synonym: "ventral part of ventral lateral posterior nucleus (jones)" EXACT []
synonym: "ventral posterolateral nucleus, oral part" EXACT [FMA:62205]
synonym: "ventral posterolateral thalamic nucleus, oral part" EXACT [FMA:62205]
xref: FMA:62205
xref: NIF_GrossAnatomy:birnlex_918
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0003020
name: subcallosal area
alt_id: UBERON:NIF_GrossAnatomy_birnlex_919-FMA_61890
def: "." [Wikipedia:Subcallosal_area]
subset: uberon_slim
synonym: "adolfactory area" EXACT [FMA:61890]
synonym: "paraolfactory area" EXACT [FMA:61890]
synonym: "parolfactory area" EXACT [FMA:61890]
xref: FMA:61890
xref: NIF_GrossAnatomy:birnlex_919
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0003021
name: central lobule
alt_id: UBERON:NIF_GrossAnatomy_birnlex_920-FMA_72519
def: "." [Wikipedia:Central_lobule]
subset: uberon_slim
synonym: "central lobule of cerebellum" EXACT [FMA:72519]
synonym: "central lobule of cerebellum [II and III]" EXACT [FMA:72519]
synonym: "central lobule of cerebellum [ii and iii]" EXACT []
xref: FMA:72519
xref: NIF_GrossAnatomy:birnlex_920
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003022
name: lobe parts of cerebral cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_922-FMA_68603
synonym: "cerebral cortical segment" EXACT [FMA:68603]
synonym: "regional organ part of cerebral cortex" EXACT [FMA:68603]
synonym: "segment of cerebral cortex" EXACT [NIF_GrossAnatomy:birnlex_922]
xref: FMA:68603
xref: NIF_GrossAnatomy:birnlex_922
is_a: UBERON:0000063 ! organ segment
[Term]
id: UBERON:0003023
name: pontine tegmentum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_923-FMA_71108
def: "." [Wikipedia:Pontine_tegmentum]
subset: uberon_slim
synonym: "dorsal portion of pons" EXACT [FMA:71108]
synonym: "tegmental portion of pons" EXACT [FMA:71108]
synonym: "tegmentum of pons" EXACT [FMA:71108]
xref: FMA:71108
xref: NIF_GrossAnatomy:birnlex_923
is_a: UBERON:0000064 ! organ part
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
relationship: has_part UBERON:0002047 ! pontine raphe nucleus
relationship: has_part UBERON:0002128 ! superior olivary complex
relationship: has_part UBERON:0002148 ! locus ceruleus
relationship: has_part UBERON:0002149 ! superior salivatory nucleus
relationship: part_of UBERON:0000988 ! pons
[Term]
id: UBERON:0003024
name: principal part of ventral posteromedial nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_927-FMA_62208
xref: FMA:62208
xref: NIF_GrossAnatomy:birnlex_927
is_a: UBERON:0002020 ! gray matter of neuraxis
[Term]
id: UBERON:0003025
name: brachium of inferior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_929-FMA_71114
def: "." [Wikipedia:Brachium_of_inferior_colliculus]
subset: uberon_slim
synonym: "brachium of medial geniculate" EXACT [FMA:71114]
synonym: "inferior brachium" EXACT [FMA:71114]
synonym: "inferior collicular brachium" EXACT [FMA:71114]
synonym: "inferior colliculus brachium" EXACT [FMA:71114]
synonym: "inferior quadrigeminal brachium" EXACT [FMA:71114]
synonym: "peduncle of inferior colliculus" EXACT [FMA:71114]
xref: FMA:71114
xref: NIF_GrossAnatomy:birnlex_929
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002917 ! implied link automatically realized ! regional part of inferior colliculus
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0003026
name: limitans nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_931-FMA_62220
xref: FMA:62220
xref: NIF_GrossAnatomy:birnlex_931
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003027
name: cingulate cortex
alt_id: UBERON:NIF_GrossAnatomy_birnlex_934-MA_0000904
def: "." [Wikipedia:Cingulate_cortex]
subset: uberon_slim
xref: BTO:0003975
xref: EFO:0000343
xref: MA:0000904
xref: ncithesaurus:Cingulate_Cortex
xref: NIF_GrossAnatomy:birnlex_934
is_a: UBERON:0002619 ! regional part of cerebral cortex
is_a: UBERON:0002791 ! regional part of telencephalon
is_a: UBERON:0003022 ! lobe parts of cerebral cortex
[Term]
id: UBERON:0003028
name: commissure of inferior colliculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_935-FMA_71115
synonym: "commissure of inferior colliculi" EXACT [FMA:71115]
synonym: "inferior collicular commissure" EXACT [FMA:71115]
synonym: "inferior colliculus commissure" EXACT [FMA:71115]
xref: FMA:71115
xref: NIF_GrossAnatomy:birnlex_935
is_a: UBERON:0001020 ! commissure
is_a: UBERON:0002917 ! implied link automatically realized ! regional part of inferior colliculus
intersection_of: UBERON:0001020 ! commissure
intersection_of: part_of UBERON:0001946 ! inferior colliculus
relationship: part_of UBERON:0001946 ! inferior colliculus
[Term]
id: UBERON:0003029
name: stria terminalis
alt_id: UBERON:NIF_GrossAnatomy_birnlex_937-FMA_61974
def: "." [Wikipedia:Stria_terminalis]
subset: uberon_slim
synonym: "semicircular stria" EXACT [FMA:61974]
xref: FMA:61974
xref: NIF_GrossAnatomy:birnlex_937
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0003030
name: posterior nucleus of thalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_939-FMA_62221
xref: FMA:62221
xref: NIF_GrossAnatomy:birnlex_939
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003031
name: submedial nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_946-FMA_62223
synonym: "gelatinosus thalamic nucleus" EXACT [FMA:62223]
synonym: "submedial nucleus of thalamus" EXACT [FMA:62223]
xref: FMA:62223
xref: NIF_GrossAnatomy:birnlex_946
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003032
name: decussation of superior cerebellar peduncle
alt_id: UBERON:NIF_GrossAnatomy_birnlex_951-FMA_72455
def: "." [Wikipedia:Decussation_of_superior_cerebellar_peduncle]
subset: uberon_slim
synonym: "decussation of brachium conjunctivum" EXACT [FMA:72455]
synonym: "decussation of superior cerebellar peduncles" EXACT [FMA:72455]
synonym: "superior cerebellar peduncle decussation" EXACT [FMA:72455]
synonym: "wernekink's decussation" EXACT [FMA:72455]
xref: FMA:72455
xref: NIF_GrossAnatomy:birnlex_951
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter
relationship: part_of UBERON:0001943 ! midbrain tegmentum
[Term]
id: UBERON:0003033
name: suprageniculate nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_953-FMA_62222
synonym: "suprageniculate thalamic nucleus" EXACT [FMA:62222]
xref: FMA:62222
xref: NIF_GrossAnatomy:birnlex_953
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003034
name: central dorsal nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_956-FMA_62169
xref: FMA:62169
xref: NIF_GrossAnatomy:birnlex_956
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003035
name: regional part of cerebellar white matter
alt_id: UBERON:NIF_GrossAnatomy_birnlex_959-FMA_72547
synonym: "segment of cerebellar white matter" EXACT [NIF_GrossAnatomy:birnlex_959]
xref: FMA:72547
xref: NIF_GrossAnatomy:birnlex_959
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003036
name: central lateral nucleus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_961-FMA_62170
synonym: "central lateral nucleus of thalamus" EXACT [FMA:62170]
synonym: "central lateral thalamic nucleus" EXACT [FMA:62170]
synonym: "centrolateral thalamic nucleus" EXACT [FMA:62170]
xref: FMA:62170
xref: NIF_GrossAnatomy:birnlex_961
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003037
name: septum
alt_id: UBERON:NIF_GrossAnatomy_birnlex_963-FMA_86461
def: "a wall, dividing a cavity or structure into smaller ones[WP]." [Wikipedia:Septum]
xref: FMA:86461
xref: NIF_GrossAnatomy:birnlex_963
xref: OpenCyc:Mx4rrqot_on_EdaAAAACs0uFOQ
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003038
name: thoracic spinal cord
alt_id: UBERON:NIF_GrossAnatomy_birnlex_966-FMA_71167
def: "." [Wikipedia:Thoracic_spinal_cord]
subset: uberon_slim
synonym: "thoracic region of spinal cord" EXACT [FMA:71167]
synonym: "thoracic segments of spinal cord [1-12]" EXACT [FMA:71167]
synonym: "thoracic spinal cord" EXACT [FMA:71167]
xref: FMA:71167
xref: ncithesaurus:Thoracic_Spinal_Cord
xref: NIF_GrossAnatomy:birnlex_966
is_a: UBERON:0001948 ! regional part of spinal cord
intersection_of: UBERON:0001948 ! regional part of spinal cord
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0003039
name: anterior commissure anterior part
alt_id: UBERON:NIF_GrossAnatomy_birnlex_969-FMA_61963
synonym: "anterior commissure, anterior part" EXACT [FMA:61963]
synonym: "olfactory limb of anterior commissure" EXACT [FMA:61963]
synonym: "olfactory part of anterior commissure" EXACT [FMA:61963]
xref: FMA:61963
xref: NIF_GrossAnatomy:birnlex_969
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
relationship: part_of UBERON:0000935 ! anterior commissure
[Term]
id: UBERON:0003040
name: central gray substance of midbrain
alt_id: UBERON:NIF_GrossAnatomy_birnlex_973-FMA_74510
def: "." [Wikipedia:Periaqueductal_gray]
subset: uberon_slim
synonym: "anulus of cerebral aqueduct" EXACT [FMA:74510]
synonym: "central (periaqueductal) gray" EXACT [FMA:74510]
synonym: "periaqueductal gray" EXACT [FMA:74510]
synonym: "periaqueductal gray matter" EXACT [FMA:74510]
synonym: "periaqueductal gray of tegmentum" EXACT [FMA:74510]
synonym: "periaqueductal grey substance" EXACT [FMA:74510]
xref: EFO:0002470
xref: FMA:74510
xref: NIF_GrossAnatomy:birnlex_973
is_a: UBERON:0002020 ! gray matter of neuraxis
is_a: UBERON:0002308 ! nucleus of brain
[Term]
id: UBERON:0003041
name: trigeminal nerve fibers
alt_id: UBERON:NIF_GrossAnatomy_birnlex_974-FMA_72501
synonym: "central part of trigeminal nerve" EXACT [FMA:72501]
synonym: "trigeminal nerve fibers" EXACT [FMA:72501]
xref: FMA:72501
xref: NIF_GrossAnatomy:birnlex_974
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0003042
name: lateral lemniscus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_976-FMA_72502
def: "." [Wikipedia:Lateral_lemniscus]
subset: uberon_slim
synonym: "lateral fillet" EXACT [FMA:72502]
xref: FMA:72502
xref: NIF_GrossAnatomy:birnlex_976
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0003043
name: posterior part of anterior commissure
alt_id: UBERON:NIF_GrossAnatomy_birnlex_977-FMA_61964
synonym: "anterior commissure, posterior part" EXACT [FMA:61964]
synonym: "temporal limb of anterior commissure" EXACT [FMA:61964]
xref: FMA:61964
xref: NIF_GrossAnatomy:birnlex_977
is_a: UBERON:0002316 ! white matter of neuraxis
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
relationship: part_of UBERON:0000935 ! anterior commissure
[Term]
id: UBERON:0003044
name: uncinate fasciculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_983-FMA_77636
def: "." [Wikipedia:Uncinate_fasciculus]
subset: uberon_slim
synonym: "cerebral uncinate fasciculus" EXACT [FMA:77636]
xref: FMA:77636
xref: NIF_GrossAnatomy:birnlex_983
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003045
name: dorsal longitudinal fasciculus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_986-FMA_83845
def: "." [Wikipedia:Dorsal_longitudinal_fasciculus]
subset: uberon_slim
synonym: "bundle of Schutz" EXACT [FMA:83845]
synonym: "bundle of schutz" EXACT []
synonym: "fasciculus of Schutz" EXACT [FMA:83845]
synonym: "fasciculus of schutz" EXACT []
synonym: "posterior longitudinal fasciculus" EXACT [FMA:83845]
xref: FMA:83845
xref: NIF_GrossAnatomy:birnlex_986
xref: ZFA:0005266
is_a: UBERON:0001019 ! fascicle
[Term]
id: UBERON:0003046
name: ventral acoustic stria
alt_id: UBERON:NIF_GrossAnatomy_birnlex_991-FMA_72498
synonym: "anterior acoustic stria" EXACT [FMA:72498]
xref: FMA:72498
xref: NIF_GrossAnatomy:birnlex_991
is_a: UBERON:0002316 ! white matter of neuraxis
[Term]
id: UBERON:0003047
name: regional part of pretectal region
alt_id: UBERON:NIF_GrossAnatomy_birnlex_993-FMA_74519
synonym: "pretectal region segment" EXACT [FMA:74519]
synonym: "segment of pretectal region" EXACT [NIF_GrossAnatomy:birnlex_993]
xref: FMA:74519
xref: NIF_GrossAnatomy:birnlex_993
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
is_a: UBERON:0002966 ! regional part of midbrain tectum
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001944 ! pretectal region
[Term]
id: UBERON:0003048
name: regional part of hypothalamus
alt_id: UBERON:NIF_GrossAnatomy_birnlex_995-FMA_67706
synonym: "hypothalamus segment" EXACT [FMA:67706]
synonym: "segment of hypothalamus" EXACT [NIF_GrossAnatomy:birnlex_995]
xref: FMA:67706
xref: NIF_GrossAnatomy:birnlex_995
is_a: UBERON:0002784 ! regional part of diencephalon
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001898 ! hypothalamus
[Term]
id: UBERON:0003049
name: collagen and cuticulin-based cuticle
alt_id: UBERON:WBbt_0005755
def: "A rigid external coating which is secreted by the hypodermis, seam and some transitional epithelial cells which covers the outer body, the major openings into the body cavity from the exterior, and two large sensory bristles, the male spicules. The cuticle of the spicules, the hook, and of some portions of the spicule channels is especially rigid and is probably sclerotized. Similar sclerotic features are occasionally noted in the ventral surface of the male tail fan. The main structural components of the nematode cuticle are proteins, highly cross-linked collagens and specialised insoluble proteins known as " [UBERON:cjm, WA:dh]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nematode cuticle" RELATED []
xref: WBbt:0005755
is_a: UBERON:0001002 ! cuticle
[Term]
id: UBERON:0003050
name: olfactory placode
alt_id: UBERON:XAO_0000005-ZFA_0000048
def: "A thick plate of cells derived from the neural ectoderm in the head region of the embryo that develops into the olfactory region of the nasal cavity." [NLM:olfactory+placode, Wikipedia:Olfactory_placode]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "nasal placode" RELATED []
xref: EHDAA:1504
xref: HOG:0000186
xref: TAO:0000048
xref: XAO:0000005
xref: ZFA:0000048
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0000005 ! chemosensory sensory organ
[Term]
id: UBERON:0003051
name: ear vesicle
alt_id: UBERON:XAO_0000006-ZFA_0000051
def: "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)" [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "otic capsule" RELATED []
synonym: "otic vesicle" RELATED []
synonym: "otocyst" RELATED []
synonym: "ov" RELATED []
xref: XAO:0000006
xref: ZFA:0000051
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0003052
name: midbrain-hindbrain boundary
alt_id: UBERON:XAO_0000016-ZFA_0000042
def: "The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate." [GO:0021555]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "isthmus" RELATED []
synonym: "MHB" EXACT []
synonym: "mhb" RELATED []
synonym: "midbrain hindbrain boundary" EXACT []
xref: HOG:0000649
xref: TAO:0000042
xref: XAO:0000016
xref: ZFA:0000042
is_a: UBERON:0000015 ! anatomical boundary
relationship: part_of UBERON:0000955 ! brain
relationship: part_of UBERON:0003075 ! neural plate
[Term]
id: UBERON:0003053
name: ventricular zone
alt_id: UBERON:XAO_0000021-ZFA_0001083
comment: This class was created automatically from a combination of ontologies
xref: BTO:0003654
xref: TAO:0001083
xref: XAO:0000021
xref: ZFA:0001083
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003054
name: roof plate
alt_id: UBERON:XAO_0000022-ZFA_0007058
def: "Organizing center located at the dorsal midline of the neural tube that influences the development of the nervous system, controlling the specification and differentiation of dorsal neuronal cell types[XAO]. a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells[GO]. The thin layer of the embryonic neural tube that connects the lateral plates dorsally." [GO:0021509, http://medical-dictionary.thefreedictionary.com/roof+plate, PMID:15378040, Wikipedia:Roof_plate, XAO:0000022]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "alar lamina" RELATED [Wikipedia:Alar_lamina]
synonym: "alar plate" RELATED [Wikipedia:Alar_plate]
synonym: "roofplate" EXACT []
synonym: "spinal cord roof" RELATED [XAO:0000022]
xref: EHDAA:1336
xref: EHDAA:1350
xref: EHDAA:1358
xref: EHDAA:1381
xref: EHDAA:1391
xref: EHDAA:1401
xref: EHDAA:1416
xref: EHDAA:1431
xref: EHDAA:1441
xref: EHDAA:1451
xref: EHDAA:1965
xref: EHDAA:1979
xref: EHDAA:1991
xref: EHDAA:2013
xref: EHDAA:2025
xref: EHDAA:2035
xref: EHDAA:2047
xref: EHDAA:2057
xref: EHDAA:2069
xref: EHDAA:2081
xref: EHDAA:2093
xref: EHDAA:2657
xref: EHDAA:2669
xref: EHDAA:2689
xref: EHDAA:2725
xref: EHDAA:2737
xref: EHDAA:2765
xref: EHDAA:2777
xref: EHDAA:2789
xref: EHDAA:2801
xref: EHDAA:2815
xref: EHDAA:2829
xref: EHDAA:2891
xref: EHDAA:3494
xref: EHDAA:3512
xref: EHDAA:3556
xref: EHDAA:3570
xref: EHDAA:3572
xref: EHDAA:3610
xref: EHDAA:3624
xref: EHDAA:3638
xref: EHDAA:3652
xref: EHDAA:3668
xref: EHDAA:3684
xref: EHDAA:3686
xref: EHDAA:3712
xref: EHDAA:5524
xref: EHDAA:5550
xref: EHDAA:7614
xref: EHDAA:864
xref: EHDAA:874
xref: EHDAA:884
xref: EHDAA:894
xref: EHDAA:916
xref: XAO:0000022
xref: ZFA:0007058
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0003055
name: outermost layer of epidermis
alt_id: UBERON:XAO_0000029-ZFA_0001185
def: "Outermost layer of all layers of the epidermis[Uberon]. In fish: The outermost epidermal layer covering the fish at embryonic stages; derived from the EVL and thought to eventually be replaced by the superficial stratum of the epidermis[ZFA]." [ZFIN:curator]
comment: This class is defined generically in terms of topology. See also Stratum corneum
subset: uberon_slim
synonym: "epidermis epithelial layer" RELATED []
synonym: "epidermis outer layer" RELATED []
synonym: "EVL" RELATED []
synonym: "periderm" RELATED []
xref: XAO:0000029
xref: ZFA:0001185
is_a: UBERON:0000483 ! epithelium
relationship: part_of UBERON:0001003 ! epidermis
[Term]
id: UBERON:0003056
name: pre-chordal neural plate
alt_id: UBERON:XAO_0000045-ZFA_0007016
def: "The portion of neural plate anterior to the mid-hindbrain junction." [XB:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "anterior neural plate" RELATED []
xref: XAO:0000045
xref: ZFA:0007016
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0003075 ! neural plate
[Term]
id: UBERON:0003057
name: chordal neural plate
alt_id: UBERON:XAO_0000046-ZFA_0007017
def: "The portion of neural plate posterior to the mid-hindbrain junction." [XB:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "posterior neural plate" RELATED []
xref: XAO:0000046
xref: ZFA:0007017
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0003075 ! neural plate
[Term]
id: UBERON:0003058
name: hypochord
alt_id: UBERON:XAO_0000056-ZFA_0000031
def: "Transient structure that lies immediately ventral to the notochord in the embryo, likely required for the formation of the dorsal aorta. A slight depression marks the future hypochord at NF stage 20 and its segregation from the dorsal endoderm begins at NF stage 24. It progresses from anterior to posterior and is complete by NF stage 28. At NF stage 32 it is present as a dorso-laterally flattened ribbon of yolk-laden cells. It degenerates by apoptosis and by NF stage 43 is no longer detectable as a distinct structure. // A transient rod-like structure which is endodermally derived and located immediately ventral to the notochord. The hypochord is thought to play a role in positioning the dorsal aorta. Eriksson and Lofberg, 2000." [ISBN:0815318960, PMID:10648245, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "subnotochordal rod" RELATED []
xref: AAO:0000733
xref: HOG:0000081
xref: TAO:0000031
xref: XAO:0000056
xref: ZFA:0000031
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000925 ! endoderm
[Term]
id: UBERON:0003059
name: presomitic mesoderm
alt_id: UBERON:XAO_0000057-ZFA_0000279
def: "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "PSM" RELATED []
synonym: "segmental plate" EXACT []
synonym: "somitogenic mesoderm" RELATED []
xref: EFO:0001982
xref: HOG:0000559
xref: TAO:0000279
xref: XAO:0000057
xref: ZFA:0000279
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_from UBERON:0003077 ! paraxial mesoderm
relationship: part_of UBERON:0003077 ! paraxial mesoderm
[Term]
id: UBERON:0003060
name: pronephric duct
alt_id: UBERON:XAO_0000063-ZFA_0000150
def: "Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the cloacal chamber. Kimmel et al, 1995. Wingert et al have suggested that the pronephric duct as described traditionally may consist of subregions which are analogous to portions of the tubule segment of mammalian and other fish nephrons. Wingert, 2007." [Wikipedia:Pronephric_duct, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: ncithesaurus:Pronephric_Duct
xref: TAO:0000150
xref: XAO:0000063
xref: ZFA:0000150
is_a: UBERON:0000058 ! duct
relationship: part_of UBERON:0002120 ! pronephros
[Term]
id: UBERON:0003061
name: blood island
alt_id: UBERON:XAO_0000067-ZFA_0000094
def: "Region located on the ventral surface of the developing embryo that is a site of hematopoiesis and that is analogous to the yolk sac blood islands of higher vertebrates. // Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension. Kimmel et al, 1995." [PMID:9618755, Wikipedia:Blood_island, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "blood islands" RELATED []
synonym: "caudal hematopoietic tissue" RELATED []
synonym: "posterior blood island" RELATED []
synonym: "posterior ICM" RELATED []
synonym: "VBI" RELATED []
synonym: "ventral blood island" RELATED []
synonym: "ventral lateral plate mesoderm" BROAD []
xref: EHDAA:170
xref: EHDAA:207
xref: HOG:0000085
xref: ncithesaurus:Blood_Island
xref: TAO:0000094
xref: XAO:0000067
xref: ZFA:0000094
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_from UBERON:0003081 ! lateral plate mesoderm
relationship: part_of UBERON:0002390 ! hematopoietic system
[Term]
id: UBERON:0003062
name: dorsal marginal zone
alt_id: UBERON:XAO_0000072-ZFA_0000071
def: "." [Wikipedia:Regional_specification#Dorsal.2Fventral_axis_.26_organizer]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "organizer" RELATED []
synonym: "shield" EXACT []
synonym: "Spemann Mangold organizer" RELATED []
synonym: "Spemann's organizer" RELATED []
xref: TAO:0000071
xref: XAO:0000072
xref: ZFA:0000071
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002541 ! germ ring
[Term]
id: UBERON:0003063
name: prechordal plate
alt_id: UBERON:XAO_0000079-ZFA_0000060
def: "Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region. Kimmel et al, 1995." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "head mesenchyme" BROAD []
synonym: "head mesoderm" BROAD []
xref: EHDAA:181
xref: HOG:0000086
xref: TAO:0000060
xref: XAO:0000079
xref: ZFA:0000060
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0003068 ! axial mesoderm
[Term]
id: UBERON:0003064
name: intermediate mesoderm
alt_id: UBERON:XAO_0000085-ZFA_0001206
def: "The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads." [GOC:curators, Wikipedia:Intermediate_mesoderm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "IM" RELATED []
xref: HOG:0000087
xref: ncithesaurus:Intermediate_Mesoderm
xref: TAO:0001206
xref: XAO:0000085
xref: ZFA:0001206
is_a: UBERON:0000061 ! anatomical structure
relationship: adjacent_to UBERON:0003077 ! paraxial mesoderm
relationship: adjacent_to UBERON:0003081 ! lateral plate mesoderm
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003065
name: ciliary marginal zone
alt_id: UBERON:XAO_0000086-ZFA_0001289
def: "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. Wehman et al, 2005." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "circumferential germinal zone" RELATED []
synonym: "CMZ" RELATED []
xref: HOG:0000088
xref: TAO:0001289
xref: XAO:0000086
xref: ZFA:0001289
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0003066
name: hyoid arch
alt_id: UBERON:XAO_0000098-ZFA_0001276
def: "." [Wikipedia:Hyoid_arch]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hyoid bars" RELATED []
synonym: "pharyngeal arch 2 skeleton" EXACT []
synonym: "second visceral arch" RELATED []
synonym: "ventral visceral arch 2" RELATED []
synonym: "visceral arch 2" RELATED []
xref: TAO:0001276
xref: XAO:0000098
xref: ZFA:0001276
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0003067
name: dorsolateral placode
alt_id: UBERON:XAO_0000187-ZFA_0001310
comment: This class was created automatically from a combination of ontologies
synonym: "dorsolateral placodes" RELATED []
xref: HOG:0000103
xref: TAO:0001310
xref: XAO:0000187
xref: ZFA:0001310
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0003068
name: axial mesoderm
alt_id: UBERON:XAO_0000205-ZFA_0001204
def: "The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord." []
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: HOG:0000107
xref: TAO:0001204
xref: XAO:0000205
xref: ZFA:0001204
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003069
name: otic placode
alt_id: UBERON:XAO_0000223-ZFA_0000138
def: "Invagination of thickened epithelium near the hindbrain that gives rise to a spherically shaped ear vesicle. // Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the midsegmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)" [PMID:16217737, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "auditory placode" RELATED []
synonym: "otic capsule" RELATED []
synonym: "otocyst" RELATED []
xref: EHDAA:506
xref: HOG:0000235
xref: ncithesaurus:Otic_Placodes
xref: TAO:0000138
xref: XAO:0000223
xref: ZFA:0000138
is_a: UBERON:0003067 ! dorsolateral placode
relationship: part_of UBERON:0001690 ! ear
[Term]
id: UBERON:0003070
name: trigeminal placode
alt_id: UBERON:XAO_0000225-ZFA_0000162
def: "The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period. Kimmel et al, 1995." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: HOG:0000109
xref: TAO:0000162
xref: XAO:0000225
xref: ZFA:0000162
is_a: UBERON:0003067 ! dorsolateral placode
relationship: develops_from UBERON:0003067 ! dorsolateral placode
[Term]
id: UBERON:0003071
name: eye primordium
alt_id: UBERON:XAO_0000227-ZFA_0000570
def: "First trace of the future visual apparatus. The eye primordia forming antero-lateral evaginations of the closing neural tube are originally massive formations into which only a slit-shaped extension of the neural groove penetrates at NF stage 18. At NF stage 19 they clearly segregate from the anterior portion of the neural tube." [ISBN:0815318960]
comment: This class was created automatically from a combination of ontologies
synonym: "eye anlage" RELATED []
synonym: "eye field" RELATED []
synonym: "optic primordium" EXACT []
xref: TAO:0000570
xref: XAO:0000227
xref: ZFA:0000570
is_a: UBERON:0001048 ! primordium
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0000970 ! eye
relationship: develops_from UBERON:0003056 ! pre-chordal neural plate
[Term]
id: UBERON:0003072
name: eye vesicle
alt_id: UBERON:XAO_0000228-ZFA_0001202
comment: This class was created automatically from a combination of ontologies
synonym: "eye cup" RELATED []
synonym: "optic cup" RELATED []
xref: XAO:0000228
xref: ZFA:0001202
is_a: UBERON:0000481 ! multi-tissue structure
relationship: develops_from UBERON:0003071 ! eye primordium
relationship: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0003073
name: lens placode
alt_id: UBERON:XAO_0000240-ZFA_0000122
def: "Ectodermal primordium of the lens of the eye. Kimmel et al, 1995." [Wikipedia:Lens_placode, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:2908
xref: HOG:0000166
xref: ncithesaurus:Lens_Placodes
xref: TAO:0000122
xref: XAO:0000240
xref: ZFA:0000122
is_a: UBERON:0001048 ! implied link automatically realized ! primordium
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0000965 ! lens
relationship: part_of UBERON:0000076 ! external ectoderm
[Term]
id: UBERON:0003074
name: mesonephric duct
alt_id: UBERON:XAO_0000242-ZFA_0000546
def: "Paired organ that connects the primitive kidney Wolffian body (or mesonephros) to the cloaca and serves as the anlage for certain male reproductive organs. the Wolffian duct is what remains of the pronephric duct after the atrophy of the pronephros. -- wikipedia" [Wikipedia:Mesonephric_duct, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "archinephric duct" RELATED [Wikipedia:Wolffian_duct]
synonym: "Leydig's duct" RELATED [Wikipedia:Wolffian_duct]
synonym: "nephric duct" RELATED []
synonym: "renal duct" RELATED []
synonym: "Wolffian duct" RELATED [Wikipedia:Wolffian_duct]
xref: EMAPA:16577
xref: ncithesaurus:Mesonephric_Duct
xref: TAO:0000546
xref: XAO:0000242
xref: ZFA:0000546
is_a: UBERON:0000058 ! duct
relationship: develops_from UBERON:0003060 ! pronephric duct
relationship: part_of UBERON:0000080 ! mesonephros
[Term]
id: UBERON:0003075
name: neural plate
alt_id: UBERON:XAO_0000249-ZFA_0000132
def: "A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube. At NF stage 11.5 is the first indication of neural plate within the sensorial layer of ectoderm. It extends to near the animal pole by NF stage 12.5 and the entire plate is faintly delimited by NF stage 13. // The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium. Kimmel et al, 1995." [ISBN:0815318960, OMD:neural+plate, Wikipedia:Neural_plate, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "presumptive central nervous system" RELATED []
xref: BTO:0001765
xref: EHDAA:346
xref: EHDAA:902
xref: HOG:0000068
xref: ncithesaurus:Neural_Plate
xref: TAO:0000132
xref: XAO:0000249
xref: ZFA:0000132
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0002346 ! neural ectoderm
[Term]
id: UBERON:0003076
name: posterior neural tube
alt_id: UBERON:XAO_0000250-ZFA_0007037
comment: This class was created automatically from a combination of ontologies
xref: HOG:0001383
xref: TAO:0007037
xref: XAO:0000250
xref: ZFA:0007037
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0003057 ! chordal neural plate
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0003077
name: paraxial mesoderm
alt_id: UBERON:XAO_0000259-ZFA_0000255
def: "Area of mesoderm at either side of the midline embryonic notochord that, on segmentation, forms the paired somites. // Mesoderm which is lateral to the neural tube on both sides. //GO: The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube" [OMD:paraxial+mesoderm, Wikipedia:Paraxial_mesoderm, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "paraxial mesenchyme" RELATED []
xref: HOG:0000114
xref: ncithesaurus:Paraxial_Mesoderm
xref: TAO:0000255
xref: XAO:0000259
xref: ZFA:0000255
is_a: UBERON:0003104 ! mesenchyme
is_a: UBERON:0003313 ! implied link automatically realized ! mesenchyme of embryo
relationship: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003078
name: epibranchial placode
alt_id: UBERON:XAO_0000284-ZFA_0001294
comment: This class was created automatically from a combination of ontologies
synonym: "epibranchial placodes" RELATED []
xref: HOG:0000117
xref: TAO:0001294
xref: XAO:0000284
xref: ZFA:0001294
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0003067 ! dorsolateral placode
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0003079
name: floor plate
alt_id: UBERON:XAO_0000306-ZFA_0000022
def: "Organizing center consisting of a small group of cells located at the ventral midline of the neural tube that influences the development of the nervous system, governing the specification of neuronal cell types and directing axonal trajectories[]. a neural tube structure that separates the left and right components of the basal plate. Derived from the notochord during neurulation, it is a ventralizing structure, secreting and aiding in the development of the dorsal-ventral axis of the brainstem and spinal cord[WP]." [GO:0021508, PMID:15738958, Wikipedia:Floor_plate]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "flexural organ" RELATED []
synonym: "floorplate" EXACT []
synonym: "fp" RELATED []
synonym: "spinal cord floor" RELATED []
xref: BTO:0001720
xref: EHDAA:1375
xref: EHDAA:1385
xref: EHDAA:1395
xref: EHDAA:1410
xref: EHDAA:1425
xref: EHDAA:1435
xref: EHDAA:1445
xref: EHDAA:1955
xref: EHDAA:1975
xref: EHDAA:1985
xref: EHDAA:2005
xref: EHDAA:2017
xref: EHDAA:2029
xref: EHDAA:2039
xref: EHDAA:2051
xref: EHDAA:2061
xref: EHDAA:2073
xref: EHDAA:2085
xref: EHDAA:2651
xref: EHDAA:2663
xref: EHDAA:2675
xref: EHDAA:2717
xref: EHDAA:2729
xref: EHDAA:2757
xref: EHDAA:2769
xref: EHDAA:2781
xref: EHDAA:2793
xref: EHDAA:2805
xref: EHDAA:2819
xref: EHDAA:2871
xref: EHDAA:304
xref: EHDAA:312
xref: EHDAA:320
xref: EHDAA:328
xref: EHDAA:334
xref: EHDAA:340
xref: EHDAA:3480
xref: EHDAA:3498
xref: EHDAA:3520
xref: EHDAA:3546
xref: EHDAA:3560
xref: EHDAA:3576
xref: EHDAA:3600
xref: EHDAA:3614
xref: EHDAA:3628
xref: EHDAA:3642
xref: EHDAA:3656
xref: EHDAA:3672
xref: EHDAA:3698
xref: EHDAA:5500
xref: EHDAA:5528
xref: EHDAA:7590
xref: EHDAA:834
xref: EHDAA:842
xref: EHDAA:846
xref: EHDAA:858
xref: EHDAA:868
xref: EHDAA:878
xref: EHDAA:888
xref: EHDAA:910
xref: TAO:0000022
xref: XAO:0000306
xref: ZFA:0000022
is_a: UBERON:0002050 ! embryonic structure
relationship: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0003080
name: anterior neural tube
alt_id: UBERON:XAO_0000307-ZFA_0007038
comment: This class was created automatically from a combination of ontologies
xref: HOG:0001384
xref: TAO:0007038
xref: XAO:0000307
xref: ZFA:0007038
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0003056 ! pre-chordal neural plate
relationship: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0003081
name: lateral plate mesoderm
alt_id: UBERON:XAO_0000311-ZFA_0000121
def: "." [Wikipedia:Lateral_plate_mesoderm]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateral mesoderm" EXACT []
synonym: "lateral plate" RELATED []
xref: HOG:0000118
xref: ncithesaurus:Lateral_Mesoderm
xref: TAO:0000121
xref: TAO:0001065
xref: XAO:0000311
xref: ZFA:0000121
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_from UBERON:0000926 ! mesoderm
relationship: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003082
name: myotome
alt_id: UBERON:XAO_0000315-ZFA_0001056
def: "A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. // Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995." [PMID:17313522, Wikipedia:Myotome, ZFIN:curator]
comment: The term "myotome" is also used to describe the muscles served by a single nerve root
subset: uberon_slim
synonym: "myomeres" RELATED []
synonym: "myotomes" RELATED []
xref: BTO:0000742
xref: EHDAA:1721
xref: EHDAA:1727
xref: EHDAA:1733
xref: EHDAA:1739
xref: HOG:0001244
xref: TAO:0001056
xref: XAO:0000315
xref: ZFA:0001056
is_a: UBERON:0001630 ! muscle organ
is_a: UBERON:0001774 ! implied link automatically realized ! muscle of trunk
relationship: develops_from UBERON:0002329 ! somite
relationship: part_of UBERON:0002329 ! somite
[Term]
id: UBERON:0003083
name: trunk neural crest
alt_id: UBERON:XAO_0000319-ZFA_0001024
def: "Trunk portion of the neural crest. The trunk neural crest lies between the vagal and sacral neural crest and gives rise to two groups of cells. One group migrates dorsolateral and populates the skin, forming pigment cells and the other migrates ventrolateral through the anterior sclerotome to become the epinephrine-producing cells of the adrenal gland and the neurons of the sympathetic nervous system. Some cells remain in the sclerotome to form the dorsal root ganglia [Wikipedia]." [ISBN:0815318960, Wikipedia:Trunk_neural_crest]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "trunk crest" RELATED []
xref: HOG:0000062
xref: TAO:0001024
xref: XAO:0000319
xref: ZFA:0001024
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0003084
name: fused heart primordium
alt_id: UBERON:XAO_0000336-ZFA_0000028
def: "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. Stainier 2001." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "heart primordium" RELATED []
xref: XAO:0000336
xref: ZFA:0000028
is_a: UBERON:0001048 ! primordium
relationship: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0003085
name: ventral aorta
alt_id: UBERON:XAO_0000338-ZFA_0000604
def: "Outflow artery from the heart to the aortic arches. Kimmel et al, 1995." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: HOG:0000121
xref: TAO:0000604
xref: XAO:0000338
xref: ZFA:0000604
is_a: UBERON:0000947 ! aorta
[Term]
id: UBERON:0003086
name: caudal artery
alt_id: UBERON:XAO_0000364-ZFA_0000011
def: "Extension of the dorsal aorta in the tail. Kimmel et al, 1995." [Wikipedia:Caudal_artery, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CA" RELATED []
xref: HOG:0000123
xref: TAO:0000011
xref: XAO:0000364
xref: ZFA:0000011
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0003087
name: anterior cardinal vein
alt_id: UBERON:XAO_0000383-ZFA_0000423
comment: This class was created automatically from a combination of ontologies
synonym: "ACV" RELATED []
synonym: "rostral cardinal veins" RELATED []
xref: HOG:0000113
xref: ncithesaurus:Anterior_Cardinal_Vein
xref: TAO:0000423
xref: XAO:0000383
xref: ZFA:0000423
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0003088
name: caudal vein
alt_id: UBERON:XAO_0000390-ZFA_0000180
def: "Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterial cardinal vein in the posterior trunk. Kimmel et al, 1995." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "CV" RELATED []
xref: HOG:0000126
xref: TAO:0000180
xref: XAO:0000390
xref: ZFA:0000180
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0003089
name: sclerotome
alt_id: UBERON:XAO_0000397-ZFA_0001080
def: "Somitic compartment that is a precursor of the axial skeleton." [Wikipedia:Sclerotome, XB:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sclerotomes" RELATED []
xref: EHDAA:1193
xref: EHDAA:1199
xref: EHDAA:1205
xref: EHDAA:1211
xref: EHDAA:1217
xref: EHDAA:1223
xref: EHDAA:1229
xref: EHDAA:1235
xref: EHDAA:1807
xref: EHDAA:1813
xref: EHDAA:1819
xref: EHDAA:1825
xref: EHDAA:1831
xref: EHDAA:1837
xref: EHDAA:1843
xref: EHDAA:1849
xref: EHDAA:1855
xref: EHDAA:2477
xref: EHDAA:2483
xref: EHDAA:2489
xref: EHDAA:2495
xref: EHDAA:2501
xref: EHDAA:2507
xref: EHDAA:2513
xref: EHDAA:2519
xref: EHDAA:2525
xref: EHDAA:2531
xref: EHDAA:674
xref: EHDAA:677
xref: EHDAA:680
xref: EHDAA:684
xref: EHDAA:703
xref: EHDAA:707
xref: EHDAA:711
xref: EHDAA:715
xref: EHDAA:719
xref: EHDAA:723
xref: EHDAA:727
xref: EHDAA:731
xref: HOG:0000680
xref: ncithesaurus:Sclerotome
xref: TAO:0001080
xref: XAO:0000397
xref: ZFA:0001080
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_from UBERON:0002329 ! somite
relationship: part_of UBERON:0002329 ! somite
[Term]
id: UBERON:0003090
name: supraorbital lateral line
alt_id: UBERON:XAO_0000442-ZFA_0000443
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: HOG:0000128
xref: TAO:0000443
xref: XAO:0000442
xref: ZFA:0000443
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002540 ! lateral line system
[Term]
id: UBERON:0003091
name: thyroid primordium
alt_id: UBERON:XAO_0000444-ZFA_0001081
comment: This class was created automatically from a combination of ontologies
xref: ncithesaurus:Thyroid_Primordium
xref: TAO:0001081
xref: XAO:0000444
xref: ZFA:0001081
is_a: UBERON:0001048 ! primordium
relationship: develops_from UBERON:0001731 ! cavity of pharynx
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0003092
name: ultimobranchial body
alt_id: UBERON:XAO_0000452-ZFA_0001448
def: "." [Wikipedia:Ultimobranchial_body]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:2987
xref: EHDAA:9139
xref: GAID:1246
xref: HOG:0001185
xref: TAO:0001448
xref: XAO:0000452
xref: ZFA:0001448
is_a: UBERON:0000061 ! anatomical structure
relationship: develops_from UBERON:0003117 ! pharyngeal arch 6
relationship: part_of UBERON:0000949 ! endocrine system
[Term]
id: UBERON:0003093
name: occipital lateral line
alt_id: UBERON:XAO_0000458-ZFA_0000400
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "supratemporal lateral line" RELATED []
xref: HOG:0000131
xref: TAO:0000400
xref: XAO:0000458
xref: ZFA:0000400
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002540 ! lateral line system
[Term]
id: UBERON:0003094
name: infraorbital lateral line
alt_id: UBERON:XAO_0000459-ZFA_0000524
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: HOG:0000132
xref: TAO:0000524
xref: XAO:0000459
xref: ZFA:0000524
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002540 ! lateral line system
[Term]
id: UBERON:0003095
name: dorsal lateral line
alt_id: UBERON:XAO_0000462-ZFA_0005112
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: TAO:0005112
xref: XAO:0000462
xref: ZFA:0005112
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002540 ! lateral line system
[Term]
id: UBERON:0003096
name: middle lateral line
alt_id: UBERON:XAO_0000463-ZFA_0000344
def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: HOG:0000133
xref: TAO:0000344
xref: XAO:0000463
xref: ZFA:0000344
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0002540 ! lateral line system
[Term]
id: UBERON:0003097
name: dorsal fin
alt_id: UBERON:XAO_0000469-ZFA_0001173
def: "." [Wikipedia:Dorsal_fin]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: OpenCyc:Mx4rvVjbzZwpEbGdrcN5Y29ycA
xref: TAO:0001173
xref: XAO:0000469
xref: ZFA:0001173
is_a: UBERON:0002534 ! fin
relationship: develops_from UBERON:0003083 ! trunk neural crest
[Term]
id: UBERON:0003098
name: optic stalk
alt_id: UBERON:XAO_0000475-ZFA_0000137
def: "." [Wikipedia:Optic_stalk]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: EHDAA:3816
xref: HOG:0000223
xref: ncithesaurus:Optic_Stalk
xref: TAO:0000137
xref: XAO:0000475
xref: ZFA:0000137
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: develops_from UBERON:0003072 ! eye vesicle
relationship: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003099
name: cranial neural crest
alt_id: UBERON:XAO_0001001-ZFA_0001194
def: "Neural crest that is part of the head [ZFA].The cranial neural crest arises in the anterior and populates the face and the pharyngeal arches giving rise to bones, cartilage, nerves and connective tissue [Wikipedia]." [Wikipedia:Cranial_neural_crest, ZFA:0001194, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "head crest" RELATED []
xref: HOG:0000063
xref: TAO:0001194
xref: XAO:0001001
xref: ZFA:0001194
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0003100
name: female organism
alt_id: UBERON:XAO_0003005-ZFA_0000303
def: "Gonochoristic organism that can produce female gametes. // Gonochoristic organism that can produce female gametes." [CARO:0000028, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: BILA:0000028
xref: CARO:0000028
xref: FBbt:00007011
xref: HAO:0000028
xref: TAO:0000303
xref: XAO:0003005
xref: ZFA:0000303
is_a: UBERON:0000468 ! multi-cellular organism
disjoint_from: UBERON:0003101 ! male organism
[Term]
id: UBERON:0003101
name: male organism
alt_id: UBERON:XAO_0003006-ZFA_0000242
def: "Gonochoristic organism that can produce male gametes. // Gonochoristic organism that can produce male gametes." [CARO:0000027, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
xref: BILA:0000027
xref: CARO:0000027
xref: FBbt:00007004
xref: HAO:0000027
xref: TAO:0000242
xref: XAO:0003006
xref: ZFA:0000242
is_a: UBERON:0000468 ! multi-cellular organism
[Term]
id: UBERON:0003102
name: surface structure
alt_id: UBERON:XAO_0003028-ZFA_0000292
def: "Organism subdivision that is the collection of anatomical structures on the body surface[ZFA]." [Wikipedia:Surface_structure, ZFA:0000292, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: TAO:0000292
xref: XAO:0003028
xref: ZFA:0000292
is_a: UBERON:0000475 ! organism subdivision
relationship: develops_from UBERON:0000076 ! external ectoderm
[Term]
id: UBERON:0003103
name: compound organ
alt_id: UBERON:XAO_0003041-ZFA_0000496
def: "Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types. // Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [CARO:0000024, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
synonym: "organ" RELATED []
xref: BILA:0000024
xref: CARO:0000024
xref: HAO:0000024
xref: TAO:0000496
xref: XAO:0003041
xref: ZFA:0000496
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0003104
name: mesenchyme
alt_id: UBERON:XAO_0003046-ZFA_0000393
def: "Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage. // A mesh-like cell arrangement, less compact than an epithelium. Kimmel et al, 1995." [BTO:0001393, Wikipedia:Mesenchyme, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
xref: BTO:0001393
xref: EHDAA:1094
xref: EHDAA:1677
xref: EHDAA:1703
xref: EHDAA:177
xref: EHDAA:205
xref: EHDAA:2362
xref: EHDAA:2910
xref: EHDAA:4170
xref: EHDAA:4176
xref: EHDAA:4184
xref: EHDAA:4190
xref: EHDAA:4200
xref: EHDAA:4782
xref: EHDAA:4788
xref: EHDAA:4794
xref: EHDAA:5012
xref: EHDAA:5149
xref: EHDAA:5157
xref: EHDAA:5163
xref: EHDAA:5169
xref: EHDAA:5175
xref: EHDAA:5200
xref: EHDAA:5208
xref: EHDAA:5873
xref: EHDAA:5879
xref: EHDAA:589
xref: EHDAA:601
xref: EHDAA:6102
xref: EHDAA:6108
xref: EHDAA:6118
xref: EHDAA:6128
xref: EHDAA:6138
xref: EHDAA:6152
xref: EHDAA:6158
xref: EHDAA:6164
xref: EHDAA:6170
xref: EHDAA:6172
xref: EHDAA:6182
xref: EHDAA:6188
xref: EHDAA:6194
xref: EHDAA:6204
xref: EHDAA:6216
xref: EHDAA:6222
xref: EHDAA:6232
xref: EHDAA:6238
xref: EHDAA:6248
xref: EHDAA:625
xref: EHDAA:6258
xref: EHDAA:6268
xref: EHDAA:6278
xref: EHDAA:6288
xref: EHDAA:6302
xref: EHDAA:6308
xref: EHDAA:6314
xref: EHDAA:6320
xref: EHDAA:6322
xref: EHDAA:6528
xref: EHDAA:6968
xref: EHDAA:7858
xref: EHDAA:7993
xref: EHDAA:8003
xref: EHDAA:8015
xref: EHDAA:8021
xref: EHDAA:8031
xref: EHDAA:8039
xref: EHDAA:8051
xref: EHDAA:8057
xref: EHDAA:8128
xref: EHDAA:8150
xref: EHDAA:8981
xref: EHDAA:9045
xref: EHDAA:9051
xref: EHDAA:9250
xref: EHDAA:9259
xref: EHDAA:9287
xref: HOG:0000170
xref: ncithesaurus:Mesenchyme
xref: TAO:0000393
xref: XAO:0003046
xref: ZFA:0000393
is_a: UBERON:0000479 ! portion of tissue
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003105
name: dorsal lateral plate region
alt_id: UBERON:XAO_0003051-ZFA_0005028
def: "Region located near the pronephros and pronephric ducts that is a site of hematopoiesis in the embryo. // Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf." [PMID:9618755, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "AGM" RELATED []
synonym: "AGM region" RELATED []
synonym: "aorta gonad mesonephros region" RELATED []
synonym: "aorta-gonads-mesonephros region" RELATED []
synonym: "DLP" EXACT []
synonym: "dlp" EXACT []
synonym: "ventral wall of dorsal aorta" EXACT []
xref: TAO:0005028
xref: XAO:0003051
xref: ZFA:0005028
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000947 ! aorta
relationship: part_of UBERON:0002390 ! hematopoietic system
relationship: part_of UBERON:0003081 ! lateral plate mesoderm
[Term]
id: UBERON:0003106
name: urostyle
alt_id: UBERON:XAO_0003080-ZFA_0000158
def: "This centrum may be formed via the fusion of the terminal centrum and half-centrum. It is sometimes termed the 'ultimate' vertebra. Mabee and Bird, 2001." [ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "compound centrum" RELATED []
synonym: "last vertebra" RELATED []
synonym: "ultimate vertebra" RELATED []
xref: AAO:0000732
xref: TAO:0000158
xref: XAO:0003080
xref: ZFA:0000158
is_a: UBERON:0002513 ! endochondral bone
relationship: part_of UBERON:0002090 ! axial skeleton
[Term]
id: UBERON:0003107
name: meckel's cartilage
alt_id: UBERON:XAO_0003085-ZFA_0001205
def: "Paired cartilaginous component of the lower jaw that fuses together through a median inferior labial cartilage, resulting in a single curved bar of cartilage by metamorphic climax. During metamorphosis it is surrounded by the developing dentale and goniale. // Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jar, or ventral mandibular arch. It is typically resorbed in adults." [PMID:3693112, Wikipedia:Meckel's_cartilage, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "Meckel's cartilage" EXACT []
xref: AAO:0000289
xref: EHDAA:7997
xref: HOG:0000249
xref: MA:0001580
xref: TAO:0001205
xref: XAO:0003085
xref: ZFA:0001205
is_a: UBERON:0002418 ! cartilage
relationship: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0003108
name: suspensorium
alt_id: UBERON:XAO_0003086-ZFA_0000444
comment: This class was created automatically from a combination of ontologies
synonym: "hyopalatine" RELATED []
synonym: "suspensoria" RELATED []
xref: AAO:0000596
xref: TAO:0000444
xref: XAO:0003086
xref: ZFA:0000444
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003109
name: transverse process
alt_id: UBERON:XAO_0003102-ZFA_0001362
def: "Parapophyses are lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. Parapophyses can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops." [Wikipedia:Transverse_process, ZFIN:curator]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "lateral process of basiventral" RELATED []
synonym: "parapophysis" EXACT []
xref: AAO:0000698
xref: AAO:0000708
xref: TAO:0001362
xref: XAO:0003102
xref: ZFA:0001362
is_a: UBERON:0002513 ! endochondral bone
relationship: part_of UBERON:0002090 ! axial skeleton
[Term]
id: UBERON:0003110
name: otic region
alt_id: UBERON:ZFA_0000189-XAO_0003175
synonym: "cranial vault" RELATED [ZFA:0000189]
xref: XAO:0003175
xref: ZFA:0000189
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0003111
name: sphenoid region
alt_id: UBERON:ZFA_0000290-XAO_0003174
xref: XAO:0003174
xref: ZFA:0000290
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0003112
name: olfactory region
alt_id: UBERON:ZFA_0000351-XAO_0003172
synonym: "ethmoid region" EXACT [ZFA:0000351]
xref: XAO:0003172
xref: ZFA:0000351
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001703 ! neurocranium
relationship: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0003113
name: dermal bone cranium
alt_id: UBERON:ZFA_0000863-XAO_0003169
synonym: "dermatocranium" EXACT [ZFA:0000863]
xref: XAO:0003169
xref: ZFA:0000863
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0000032 ! cranial structure
[Term]
id: UBERON:0003114
name: pharyngeal arch 3
alt_id: UBERON:ZFA_0001606-XAO_0000447
def: "." [Wikipedia:First_branchial_arch]
subset: uberon_slim
synonym: "branchial arch 1" EXACT [ZFA:0001606]
synonym: "first branchial arch" EXACT [XAO:0000447]
synonym: "gill arch 1" EXACT [ZFA:0001606]
synonym: "third visceral arch" RELATED [XAO:0000447]
synonym: "visceral arch 3" EXACT [ZFA:0001606]
xref: XAO:0000447
xref: ZFA:0001606
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0003115
name: pharyngeal arch 4
alt_id: UBERON:ZFA_0001607-XAO_0000449
def: "." [Wikipedia:Second_branchial_arch]
subset: uberon_slim
synonym: "branchial arch 2" EXACT [ZFA:0001607]
synonym: "fourth visceral arch" RELATED [XAO:0000449]
synonym: "gill arch 2" EXACT [ZFA:0001607]
synonym: "second branchial arch" EXACT [XAO:0000449]
synonym: "visceral arch 4" EXACT [ZFA:0001607]
xref: XAO:0000449
xref: ZFA:0001607
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0003116
name: pharyngeal arch 5
alt_id: UBERON:ZFA_0001608-XAO_0000451
synonym: "branchial arch 3" EXACT [ZFA:0001608]
synonym: "fifth visceral arch" RELATED [XAO:0000451]
synonym: "gill arch 3" EXACT [ZFA:0001608]
synonym: "third branchial arch" EXACT [XAO:0000451]
synonym: "visceral arch 5" EXACT [ZFA:0001608]
xref: XAO:0000451
xref: ZFA:0001608
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0003117
name: pharyngeal arch 6
alt_id: UBERON:ZFA_0001609-XAO_0000453
synonym: "branchial arch 4" EXACT [ZFA:0001609]
synonym: "fourth branchial arch" EXACT [XAO:0000453]
synonym: "gill arch 4" EXACT [ZFA:0001609]
synonym: "sixth visceral arch" RELATED [XAO:0000453]
synonym: "visceral arch 6" EXACT [ZFA:0001609]
xref: XAO:0000453
xref: ZFA:0001609
is_a: UBERON:0002539 ! pharyngeal arch
[Term]
id: UBERON:0003118
name: aortic arch 1
alt_id: UBERON:ZFA_0005005-XAO_0000342
synonym: "AA1" EXACT [ZFA:0005005]
synonym: "aa1" EXACT []
synonym: "first aortic arch" EXACT [XAO:0000342]
synonym: "mandibular aortic arch" EXACT [ZFA:0005005]
xref: HOG:0000149
xref: TAO:0005004
xref: XAO:0000342
xref: ZFA:0005005
is_a: UBERON:0001612 ! implied link automatically realized ! facial artery
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0001708 ! jaw
[Term]
id: UBERON:0003119
name: aortic arch 2
alt_id: UBERON:ZFA_0005006-XAO_0000343
synonym: "AA2" EXACT [ZFA:0005006]
synonym: "aa2" EXACT []
synonym: "hyoid aortic arch" EXACT [ZFA:0005006]
synonym: "second aortic arch" EXACT [XAO:0000343]
xref: HOG:0000148
xref: XAO:0000343
xref: ZFA:0005006
is_a: UBERON:0001637 ! artery
relationship: part_of UBERON:0003066 ! hyoid arch
[Term]
id: UBERON:0003120
name: aortic arch 3
alt_id: UBERON:ZFA_0005007-XAO_0000344
synonym: "AA3" EXACT [ZFA:0005007]
synonym: "aa3" EXACT []
synonym: "third aortic arch" EXACT [XAO:0000344]
xref: HOG:0000147
xref: XAO:0000344
xref: ZFA:0005007
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0003121
name: aortic arch 4
alt_id: UBERON:ZFA_0005008-XAO_0000355
synonym: "AA4" EXACT [ZFA:0005008]
synonym: "aa4" EXACT []
synonym: "fourth aortic arch" EXACT [XAO:0000355]
xref: HOG:0000146
xref: XAO:0000355
xref: ZFA:0005008
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0003122
name: aortic arch 5
alt_id: UBERON:ZFA_0005009-XAO_0000352
synonym: "AA5" EXACT [ZFA:0005009]
synonym: "aa5" EXACT []
synonym: "fifth aortic arch" EXACT [XAO:0000352]
xref: HOG:0000145
xref: XAO:0000352
xref: ZFA:0005009
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0003123
name: aortic arch 6
alt_id: UBERON:ZFA_0005016-XAO_0000353
synonym: "AA6" EXACT [ZFA:0005016]
synonym: "aa6" EXACT []
synonym: "sixth aortic arch" EXACT [XAO:0000353]
xref: HOG:0000144
xref: XAO:0000353
xref: ZFA:0005016
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0003124
name: chorion
def: "Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo [ZFA]. The outer membrane of the two membranes enclosing the embryo in reptiles, birds, and mammals. In placental mammals it contributes to the development of the placenta[BTO]. Wikipedia: The chorion is one of the membranes that exists during pregnancy between the developing fetus and mother. It is formed by extraembryonic mesoderm and the two layers of trophoblast and surrounds the embryo and other membranes. The chorionic villi emerge from the chorion, invade the endometrium, and allow transfer of nutrients from maternal blood to fetal blood." [ZFA:0000020]
subset: uberon_slim
synonym: "chorion (vertebrates)" EXACT []
xref: BTO:0000252
xref: EHDAA:150
xref: FMA:80224
xref: GAID:1299
xref: HOG:0000200
xref: ncithesaurus:Chorion
is_a: UBERON:0000478 ! extraembryonic structure
relationship: adjacent_to UBERON:0000922 ! embryo
relationship: part_of UBERON:0000992 ! ovary
[Term]
id: UBERON:0003125
name: vitelline membrane
def: "a structure directly adjacent to the outer surface of the plasma membrane of an ovum. It is composed mostly of protein fibers, with protein receptors needed for sperm binding, binding to sperm plasma membrane receptors. The species-specificity between these receptors contributes to prevention of breeding between different species [Wikipedia]. A protective layer around the egg[FBbt]." [Wikipedia:Vitelline_membrane]
synonym: "zona pellucida" RELATED []
xref: BTO:0001450
xref: FBbt:00000042
xref: GAID:1318
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003126
name: vertebrate trachea
def: "A trachea held open by up to 20 C-shaped rings of cartilage [Wikipedia]. The trachea is the portion of the airway that attaches to the bronchi as it branches [GO:dph]." [GO:0060438, Wikipedia:Vertebrate_trachea]
subset: uberon_slim
synonym: "cartilaginous trachea" EXACT []
synonym: "Windpipe" EXACT []
synonym: "windpipe" EXACT []
xref: BTO:0001388
xref: EFO:0000935
xref: EHDAA:3078
xref: FMA:7394
xref: GAID:361
xref: HOG:0000371
xref: MA:0000441
xref: MAT:0000137
xref: MIAA:0000137
xref: XAO:0000118
is_a: UBERON:0001005 ! trachea
relationship: part_of UBERON:0001558 ! lower respiratory tract
relationship: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003127
name: invertebrate trachea
def: "A trachea composed of composed of spiracles, tracheae, and tracheoles [Wikipedia]. An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster." [GO:0007424, Wikipedia:Invertebrate_trachea]
comment: TODO: system vs organ part
subset: uberon_slim
synonym: "open tracheal system" EXACT []
xref: FBbt:00005043
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0001005 ! trachea
[Term]
id: UBERON:0003128
name: cranium
def: "Upper portion of the skull." [Wikipedia:Cranium_(anatomy)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "chondrocranium" RELATED []
synonym: "cranial bone" RELATED []
synonym: "cranial skeleton" RELATED []
synonym: "craniofacial bone" RELATED []
synonym: "epicranial plate" RELATED []
synonym: "skeletal system of head" RELATED []
xref: BILA:0000115
xref: BTO:0001295
xref: EFO:0000831
xref: EHDAA:6029
xref: HOG:0000334
xref: MA:0000316
xref: MAT:0000340
xref: MIAA:0000340
xref: NIF_GrossAnatomy:birnlex_1230
xref: OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA
xref: TAO:0000737
xref: ZFA:0000737
is_a: UBERON:0000032 ! cranial structure
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003129
name: skull
def: "Bony structure that is part of the head consisting of cranium and mandible." [Wikipedia:Skull]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "chondrocranium" RELATED []
synonym: "cranial bone" RELATED []
synonym: "cranial skeleton" RELATED []
synonym: "craniofacial bone" RELATED []
synonym: "epicranial plate" RELATED []
synonym: "skeletal system of head" RELATED []
synonym: "skull" RELATED []
synonym: "skull bone" RELATED []
xref: EFO:0000831
xref: FMA:46565
xref: ncithesaurus:Skull
is_a: UBERON:0000032 ! cranial structure
relationship: has_part UBERON:0001684 ! mandible
relationship: has_part UBERON:0003128 ! cranium
[Term]
id: UBERON:0003130
name: arthropod sternum
alt_id: UBERON:FBbt_00004557-FMA_7485-MA_0001331
def: "ventral portion of a segment of an arthropod thorax or abdomen. In insects, the sterna are usually single, large sclerites, and external. However, they can sometimes be divided in two or more, in which case the subunits are called sternites, and may also be modified on the terminal abdominal segments so as to form part of the functional genitalia, in which case they are frequently reduced in size and development, and may become internalized and/or membranous." [Wikipedia:Sternum_(arthropod)]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "sternum" BROAD []
xref: FBbt:00004557
xref: HAO:0000956
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0003131
name: arthropod tibia
def: "A section of the arthropod leg." [Wikipedia:Arthropod_leg]
comment: Homologies of leg segments between groups are difficult to prove and are the source of much argument. Some authors posit up to eleven segments per leg for the most recent common ancestor of extant arthropods [1], but modern arthropods have eight or fewer. It has been argued [2][3] that the ancestral leg need not have been so complex, and that other events, such as the successive loss of function of a Hox-gene could result in parallel gains of leg segments.
subset: uberon_slim
synonym: "shankbone" EXACT [Wikipedia:Tibia]
synonym: "shinbone" EXACT [Wikipedia:Tibia]
synonym: "Tibia" EXACT []
xref: FBbt:00004642
xref: HAO:0001017
xref: ncithesaurus:Tibia
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003132
name: arthropod hypopharynx
def: "A median tonguelike structure arising from the mouth." [http://www.britannica.com/EBchecked/topic/279974/hypopharynx]
subset: uberon_slim
xref: FBbt:00005751
xref: HAO:0000409
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0003133
name: reproductive organ
def: "An organ involved in reproduction" [UBERON:xp]
synonym: "reproductive system organ" EXACT []
synonym: "sex organ" EXACT []
xref: MA:0001752
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0003134
name: female reproductive organ
def: "A female organ involved in reproduction" [UBERON:xp]
synonym: "female reproductive system organ" EXACT []
synonym: "female sex organ" EXACT []
is_a: UBERON:0003133 ! reproductive organ
intersection_of: UBERON:0003133 ! reproductive organ
intersection_of: part_of UBERON:0003100 ! female organism
[Term]
id: UBERON:0003135
name: male reproductive organ
def: "A male organ involved in reproduction" [UBERON:xp]
synonym: "male reproductive system organ" EXACT []
synonym: "male sex organ" EXACT []
is_a: UBERON:0003133 ! reproductive organ
intersection_of: UBERON:0003133 ! reproductive organ
intersection_of: part_of UBERON:0003101 ! male organism
[Term]
id: UBERON:0003136
name: tagma
alt_id: UBERON:FBbt_00000002-HAO_0000988
xref: FBbt:00000002
xref: HAO:0000988
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0003137
name: antennal segment
alt_id: UBERON:FBbt_00000009-HAO_0000104
xref: FBbt:00000009
xref: HAO:0000104
is_a: UBERON:0000914 ! segment
[Term]
id: UBERON:0003138
name: thoracic segment
alt_id: UBERON:FBbt_00000016-HAO_0001013
xref: FBbt:00000016
xref: HAO:0001013
is_a: UBERON:0000914 ! segment
relationship: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0003139
name: larval tagma
alt_id: UBERON:FBbt_00001728-HAO_0000462
xref: FBbt:00001728
xref: HAO:0000462
is_a: UBERON:0000475 ! organism subdivision
relationship: part_of UBERON:0002548 ! larva
[Term]
id: UBERON:0003140
name: larval thorax
alt_id: UBERON:FBbt_00001741-HAO_0000463
xref: FBbt:00001741
xref: HAO:0000463
is_a: UBERON:0000915 ! thorax
[Term]
id: UBERON:0003141
name: larval abdomen
alt_id: UBERON:FBbt_00001746-HAO_0000460
xref: FBbt:00001746
xref: HAO:0000460
is_a: UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003142
name: prepupa
alt_id: UBERON:FBbt_00002952-HAO_0000812
synonym: "PP" RELATED [FBbt:00002952]
xref: BTO:0001110
xref: FBbt:00002952
xref: HAO:0000812
is_a: UBERON:0000468 ! multi-cellular organism
relationship: develops_from UBERON:0002548 ! larva
[Term]
id: UBERON:0003143
name: pupa
alt_id: UBERON:FBbt_00002953-HAO_0000886
synonym: "P" RELATED [FBbt:00002953]
xref: BTO:0001143
xref: EFO:0002684
xref: FBbt:00002953
xref: HAO:0000886
is_a: UBERON:0000468 ! multi-cellular organism
relationship: existence_starts_and_ends_during UBERON:0000070 ! pupal stage
[Term]
id: UBERON:0003144
name: adult tagma
alt_id: UBERON:FBbt_00003005-HAO_0000089
xref: FBbt:00003005
xref: HAO:0000089
is_a: UBERON:0000475 ! organism subdivision
[Term]
id: UBERON:0003145
name: adult thorax
alt_id: UBERON:FBbt_00003018-HAO_0000090
xref: FBbt:00003018
xref: HAO:0000090
is_a: UBERON:0000915 ! thorax
[Term]
id: UBERON:0003146
name: adult abdomen
alt_id: UBERON:FBbt_00003023-HAO_0000088
xref: FBbt:00003023
xref: HAO:0000088
is_a: UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003147
name: peritreme
alt_id: UBERON:FBbt_00003121-HAO_0000712
synonym: "rim" RELATED [FBbt:00003121]
xref: FBbt:00003121
xref: HAO:0000712
is_a: UBERON:0000466 ! immaterial anatomical entity
[Term]
id: UBERON:0003148
name: sclerite
alt_id: UBERON:FBbt_00004475-HAO_0000909
synonym: "plate" RELATED [FBbt:00004475]
xref: FBbt:00004475
xref: HAO:0000909
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0003149
name: tergite
alt_id: UBERON:FBbt_00004476-HAO_0001005
comment: DV with CARO
synonym: "abdominal tergite" EXACT [FBbt:00004476]
xref: FBbt:00004476
xref: HAO:0001005
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0003150
name: sternite
alt_id: UBERON:FBbt_00004477-HAO_0000955
comment: DV with CARO
synonym: "abdominal sternite" EXACT [FBbt:00004477]
xref: FBbt:00004477
xref: HAO:0000955
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0003151
name: foramen
alt_id: UBERON:FBbt_00004478-HAO_0000345
xref: FBbt:00004478
xref: HAO:0000345
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0003152
name: phragma
alt_id: UBERON:FBbt_00004480-HAO_0000716
def: "The lamella that serves as the site of attachment of the longitudinal flight muscle [HAO]." [HAO:0000716]
xref: FBbt:00004480
xref: HAO:0000716
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003153
name: head capsule
alt_id: UBERON:FBbt_00004482-HAO_0000398
xref: EFO:0001927
xref: FBbt:00004482
xref: HAO:0000398
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003154
name: gena
alt_id: UBERON:FBbt_00004491-HAO_0000371
synonym: "cheek" RELATED [FBbt:00004491]
xref: FBbt:00004491
xref: HAO:0000371
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003155
name: occiput
alt_id: UBERON:FBbt_00004492-HAO_0000658
xref: FBbt:00004492
xref: HAO:0000658
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003156
name: postocciput
alt_id: UBERON:FBbt_00004494-HAO_0000790
xref: FBbt:00004494
xref: HAO:0000790
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003157
name: postgena
alt_id: UBERON:FBbt_00004496-HAO_0000776
xref: FBbt:00004496
xref: HAO:0000776
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003158
name: tentorial pit
alt_id: UBERON:FBbt_00004501-HAO_0000999
xref: FBbt:00004501
xref: HAO:0000999
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003159
name: anterior tentorial pit
alt_id: UBERON:FBbt_00004502-HAO_0000126
xref: FBbt:00004502
xref: HAO:0000126
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003160
name: posterior tentorial pit
alt_id: UBERON:FBbt_00004503-HAO_0000768
xref: FBbt:00004503
xref: HAO:0000768
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003161
name: dorsal ocellus
alt_id: UBERON:FBbt_00004505-HAO_0000661
def: "A simple visual organ of insects[GO]. Two ocelli appear on the vertical and one on the frontal plate[FBbt]. The multi-tissue structure that is located on the top of the head, composed of the corneal lens, pigment cell, rhabdoms and synaptic plexus[HAO]. Two evolutionary distinct ocellus types exist [2]: dorsal ocelli (or simply 'ocelli'), found in most insects, and lateral ocelli (or stemmata), which are found in the larvae of some insect orders. They are structurally and functionally very different. Simple eyes of other animals, e.g. cnidarians may also be referred to as 'ocelli', but again the structure and anatomy of these eyes is quite distinct from those of the dorsal ocelli of insects[Wikipedia]." [FBbt:00004505, GO:0008056, HAO:0000661, Wikipedia:Ocellus#Ocelli]
comment: DV with CARO
synonym: "dorsal ocelli" RELATED PLURAL []
synonym: "ocelli" RELATED PLURAL []
synonym: "ocellus" EXACT []
xref: BTO:0001758
xref: FBbt:00004505
xref: HAO:0000661
is_a: UBERON:0000481 ! multi-tissue structure
is_a: UBERON:0000963 ! head sensillum
[Term]
id: UBERON:0003162
name: lateral ocellus
alt_id: UBERON:FBbt_00004506-HAO_0000481
def: "The ocellus that is paired[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000481, Wikipedia:Ocellus#Ocelli]
xref: FBbt:00004506
xref: HAO:0000481
is_a: UBERON:0003161 ! dorsal ocellus
[Term]
id: UBERON:0003163
name: mouthpart
alt_id: UBERON:FBbt_00004520-HAO_0000639
comment: TODO
xref: FBbt:00004520
xref: HAO:0000639
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003164
name: clypeus
alt_id: UBERON:FBbt_00004521-HAO_0000212
xref: FBbt:00004521
xref: HAO:0000212
is_a: UBERON:0000466 ! immaterial anatomical entity
[Term]
id: UBERON:0003165
name: cibarium
alt_id: UBERON:FBbt_00004526-HAO_0000201
synonym: "atrium" RELATED [FBbt:00004526]
xref: FBbt:00004526
xref: HAO:0000201
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0003166
name: prementum
alt_id: UBERON:FBbt_00004534-HAO_0000804
synonym: "theca" RELATED [FBbt:00004534]
xref: FBbt:00004534
xref: HAO:0000804
is_a: UBERON:0000914 ! segment
[Term]
id: UBERON:0003167
name: lacinia
alt_id: UBERON:FBbt_00004536-HAO_0000457
xref: FBbt:00004536
xref: HAO:0000457
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0003168
name: mentum
alt_id: UBERON:FBbt_00004544-HAO_0000534
xref: FBbt:00004544
xref: HAO:0000534
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0003169
name: cervical sclerite
alt_id: UBERON:FBbt_00004548-HAO_0000195
comment: DV with CARO
xref: FBbt:00004548
xref: HAO:0000195
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0003170
name: tergum
alt_id: UBERON:FBbt_00004552-HAO_0001006
xref: FBbt:00004552
xref: HAO:0001006
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003171
name: episternum
alt_id: UBERON:FBbt_00004554-HAO_0000303
xref: FBbt:00004554
xref: HAO:0000303
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003172
name: epimeron
alt_id: UBERON:FBbt_00004556-HAO_0000299
xref: FBbt:00004556
xref: HAO:0000299
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003173
name: pronotum
alt_id: UBERON:FBbt_00004561-HAO_0000853
xref: FBbt:00004561
xref: HAO:0000853
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003174
name: furcasternum
alt_id: UBERON:FBbt_00004570-HAO_0000367
xref: FBbt:00004570
xref: HAO:0000367
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003175
name: prescutum
alt_id: UBERON:FBbt_00004582-HAO_0000815
xref: FBbt:00004582
xref: HAO:0000815
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003176
name: anterior notal wing process
alt_id: UBERON:FBbt_00004585-HAO_0000120
xref: FBbt:00004585
xref: HAO:0000120
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003177
name: posterior notal wing process
alt_id: UBERON:FBbt_00004586-HAO_0000758
xref: FBbt:00004586
xref: HAO:0000758
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003178
name: postnotum
alt_id: UBERON:FBbt_00004588-HAO_0000786
synonym: "postscutellum" RELATED [FBbt:00004588]
xref: FBbt:00004588
xref: HAO:0000786
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003179
name: pleural wing process
alt_id: UBERON:FBbt_00004595-HAO_0000726
xref: FBbt:00004595
xref: HAO:0000726
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003180
name: anepisternum
alt_id: UBERON:FBbt_00004597-HAO_0000094
synonym: "mesopleurite" RELATED [FBbt:00004597]
xref: FBbt:00004597
xref: HAO:0000094
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003181
name: scutoscutellar suture
alt_id: UBERON:FBbt_00004601-HAO_0000920
xref: FBbt:00004601
xref: HAO:0000920
is_a: UBERON:0000969 ! suture
[Term]
id: UBERON:0003182
name: pleural suture
alt_id: UBERON:FBbt_00004603-HAO_0000725
xref: FBbt:00004603
xref: HAO:0000725
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000969 ! suture
[Term]
id: UBERON:0003183
name: notopleural suture
alt_id: UBERON:FBbt_00004604-HAO_0000649
xref: FBbt:00004604
xref: HAO:0000649
is_a: UBERON:0000969 ! suture
[Term]
id: UBERON:0003184
name: mesofurca
alt_id: UBERON:FBbt_00004619-HAO_0000547
synonym: "mesothoracic sternal apophysis" RELATED [FBbt:00004619]
xref: FBbt:00004619
xref: HAO:0000547
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003185
name: metafurca
alt_id: UBERON:FBbt_00004638-HAO_0000592
synonym: "metathoracic sternal apophysis" RELATED [FBbt:00004638]
xref: FBbt:00004638
xref: HAO:0000592
is_a: UBERON:0000061 ! anatomical structure
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003186
name: coxa
alt_id: UBERON:FBbt_00004641-HAO_0000228
xref: FBbt:00004641
xref: HAO:0000228
is_a: UBERON:0000475 ! organism subdivision
is_a: UBERON:0000914 ! segment
is_a: UBERON:0002529 ! implied link automatically realized ! limb segment
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003187
name: pretarsus
alt_id: UBERON:FBbt_00004653-HAO_0000820
xref: FBbt:00004653
xref: HAO:0000820
is_a: UBERON:0000475 ! organism subdivision
is_a: UBERON:0000914 ! segment
is_a: UBERON:0002529 ! implied link automatically realized ! limb segment
relationship: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003188
name: auxilia
alt_id: UBERON:FBbt_00004654-HAO_0000153
xref: FBbt:00004654
xref: HAO:0000153
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0003189
name: unguitractor plate
alt_id: UBERON:FBbt_00004658-HAO_0001043
comment: DV with CARO
xref: FBbt:00004658
xref: HAO:0001043
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0003190
name: empodium
alt_id: UBERON:FBbt_00004659-HAO_0000288
xref: FBbt:00004659
xref: HAO:0000288
is_a: UBERON:0000466 ! immaterial anatomical entity
[Term]
id: UBERON:0003191
name: tegula
alt_id: UBERON:FBbt_00004730-HAO_0000993
xref: FBbt:00004730
xref: HAO:0000993
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0000984 ! thoracic wing
[Term]
id: UBERON:0003192
name: axillary sclerite
alt_id: UBERON:FBbt_00004737-HAO_0000159
comment: DV with CARO
xref: FBbt:00004737
xref: HAO:0000159
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0003193
name: axillary cord
alt_id: UBERON:FBbt_00004744-HAO_0000157
xref: FBbt:00004744
xref: HAO:0000157
is_a: UBERON:0000476 ! acellular anatomical structure
[Term]
id: UBERON:0003194
name: wing vein
alt_id: UBERON:FBbt_00004751-HAO_0001095
xref: FBbt:00004751
xref: HAO:0001095
is_a: UBERON:0000476 ! acellular anatomical structure
is_a: UBERON:0001638 ! implied link automatically realized ! vein
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0000023 ! wing
[Term]
id: UBERON:0003195
name: crossvein
alt_id: UBERON:FBbt_00004765-HAO_0000236
xref: FBbt:00004765
xref: HAO:0000236
is_a: UBERON:0000476 ! acellular anatomical structure
[Term]
id: UBERON:0003196
name: wing cell
alt_id: UBERON:FBbt_00004769-HAO_0001091
synonym: "intervein" RELATED [FBbt:00004769]
xref: FBbt:00004769
xref: HAO:0001091
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0003197
name: costal cell
alt_id: UBERON:FBbt_00004770-HAO_0000226
xref: FBbt:00004770
xref: HAO:0000226
is_a: UBERON:0000479 ! portion of tissue
[Term]
id: UBERON:0003198
name: aedeagus
alt_id: UBERON:FBbt_00004850-HAO_0000091
xref: FBbt:00004850
xref: HAO:0000091
is_a: UBERON:0000472 ! simple organ
[Term]
id: UBERON:0003199
name: egg chamber
alt_id: UBERON:FBbt_00004894-HAO_0000287
synonym: "follicle" RELATED [FBbt:00004894]
synonym: "germarium derived egg chamber" EXACT [FBbt:00004894]
xref: FBbt:00004894
xref: HAO:0000287
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0003200
name: pedicel
alt_id: UBERON:FBbt_00004920-HAO_0000706
xref: FBbt:00004920
xref: HAO:0000706
is_obsolete: true
[Term]
id: UBERON:0003201
name: exocuticle
alt_id: UBERON:FBbt_00004973-HAO_0000311
xref: BTO:0001602
xref: FBbt:00004973
xref: HAO:0000311
is_a: UBERON:0000476 ! acellular anatomical structure
[Term]
id: UBERON:0003202
name: endocuticle
alt_id: UBERON:FBbt_00004974-HAO_0000290
xref: BTO:0001603
xref: FBbt:00004974
xref: HAO:0000290
is_a: UBERON:0000476 ! acellular anatomical structure
[Term]
id: UBERON:0003203
name: apodeme
alt_id: UBERON:FBbt_00005091-HAO_0000142
xref: FBbt:00005091
xref: HAO:0000142
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003204
name: epipharynx
alt_id: UBERON:FBbt_00005750-HAO_0000301
xref: FBbt:00005750
xref: HAO:0000301
is_a: UBERON:0000481 ! multi-tissue structure
relationship: part_of UBERON:0001041 ! foregut
[Term]
id: UBERON:0003205
name: articulation
alt_id: UBERON:FBbt_00005811-HAO_0000151
xref: FBbt:00005811
xref: HAO:0000151
xref: ncithesaurus:Articulation
is_a: UBERON:0000477 ! anatomical cluster
[Term]
id: UBERON:0003206
name: apophysis
alt_id: UBERON:FBbt_00005813-HAO_0000143
xref: FBbt:00005813
xref: FMA:75428
xref: HAO:0000143
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003207
name: appendage segment
alt_id: UBERON:FBbt_00007018-HAO_0000145
xref: FBbt:00007018
xref: HAO:0000145
is_a: UBERON:0000475 ! organism subdivision
is_a: UBERON:0000914 ! segment
[Term]
id: UBERON:0003209
name: blood nerve barrier
def: "barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO]." [GO:0008065, Wikipedia:Blood-nerve_barrier]
synonym: "blood-nerve barrier" EXACT []
is_a: UBERON:0000119 ! cell layer
relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid
relationship: adjacent_to UBERON:0001021 ! nerve
[Term]
id: UBERON:0003210
name: blood-cerebrospinal fluid barrier
def: "barrier in the choroid plexus located in the lateral, third, and fourth brain ventricles that controls the entrance of substances into the cerebrospinal fluid from the blood[MP]." [MP:0006088]
is_a: UBERON:0000119 ! cell layer
relationship: adjacent_to UBERON:0000178 ! blood
relationship: adjacent_to UBERON:0001359 ! cerebrospinal fluid
[Term]
id: UBERON:0003211
name: median ocellus
def: "The ocellus that is is located medially on the cranium[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000526, Wikipedia:Ocellus#Ocelli]
xref: FBbt:00004507
xref: HAO:0000526
is_a: UBERON:0003161 ! dorsal ocellus
[Term]
id: UBERON:0003212
name: gustatory organ
synonym: "taste organ" EXACT []
xref: FBbt:00005159
xref: FMA:77853
is_a: UBERON:0000005 ! chemosensory sensory organ
intersection_of: UBERON:0000062 ! organ
intersection_of: part_of UBERON:0001033 ! gustatory system
relationship: part_of UBERON:0001033 ! gustatory system
[Term]
id: UBERON:0003213
name: cranial ganglion
alt_id: UBERON:MA_0000184-MA_0000214-MIAA_0000200-WBbt_0005135-ZFA_0000013
def: "Ganglion which is located in the head." [ZFIN:curator]
subset: uberon_slim
synonym: "cranial ganglia" RELATED []
synonym: "cranial ganglion" EXACT []
synonym: "head ganglion" RELATED []
xref: BTO:0000106
xref: EFO:0000902
xref: HOG:0000076
xref: MA:0000214
xref: MAT:0000200
xref: MIAA:0000200
xref: TAO:0000013
xref: WBbt:0005135
xref: XAO:0000027
xref: ZFA:0000013
is_a: UBERON:0000045 ! ganglion
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003214
name: mammary gland alveolus
def: "a sac-like structure that is found in the mature gland[GO]." [GO:0060749]
synonym: "lactiferous alveolus" EXACT []
synonym: "lactiferous gland alveolus" EXACT []
synonym: "mammary alveolus" EXACT []
xref: FMA:73285
xref: MA:0002760
is_a: UBERON:0003215 ! alveolus
intersection_of: UBERON:0003215 ! alveolus
intersection_of: part_of UBERON:0001911 ! lactiferous gland
relationship: part_of UBERON:0001911 ! lactiferous gland
[Term]
id: UBERON:0003215
name: alveolus
def: "organ part that has the form of a hollow cavity[WP]." [Wikipedia:Alveolus]
xref: EFO:0002513
xref: FMA:82493
xref: ncithesaurus:Alveolus
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0003216
name: hard palate
alt_id: UBERON:FMA_54549-FMA_55023-MA_0002476-MA_0002477-MIAA_0000161
def: "anterior portion of the palate consisting of bone and mucous membranes[GO]." [GO:0060022, Wikipedia:Hard_palate]
comment: This class was created automatically from a combination of ontologies
subset: uberon_slim
synonym: "hard palate" EXACT []
xref: FMA:55023
xref: GAID:221
xref: MA:0002477
xref: MAT:0000161
xref: MIAA:0000161
xref: ncithesaurus:Hard_Palate
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0001716 ! palate
[Term]
id: UBERON:0003217
name: neural lobe of neurohypophysis
alt_id: UBERON:FMA_74636-ZFA_0001271
def: "." [Wikipedia:Neurohypophysis]
comment: TODO - compare with UBERON:0002198
subset: uberon_slim
synonym: "pars nervosa of hypophysis" EXACT []
synonym: "pars nervosa of neurohypophysis" EXACT []
synonym: "pars nervosa of posterior lobe of pituitary gland" EXACT []
synonym: "posterior lobe-3" EXACT []
xref: FMA:74636
xref: NIF_GrossAnatomy:birnlex_941
is_a: UBERON:0002616 ! regional part of brain
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
relationship: part_of UBERON:0002198 ! neurohypophysis
[Term]
id: UBERON:0003218
name: ovary septum
def: "Septum that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s)[GO]." [GO:0080126, Wikipedia:Septum]
is_a: UBERON:0003037 ! septum
relationship: part_of UBERON:0000992 ! ovary
[Term]
id: UBERON:0003219
name: shell septum
def: "Septum that divides the internal chambers (camerae) of the shell of a cephalopod, namely nautiloids or ammonoids." [GO:0080126, Wikipedia:Septum_(marine_biology)]
is_a: UBERON:0003037 ! septum
[Term]
id: UBERON:0003220
name: metanephric blastema
def: "one of the two embryological structures that give rise to the kidney (the other is the ureteric bud). The metanephric blastema mostly develops into nephrons, but can also form parts of the collecting duct system.[WP]" [Wikipedia:Metanephric_blastema]
synonym: "metanephric mesenchyme" EXACT [Wikipedia:Metanephric_blastema]
synonym: "metanephric mesoderm" EXACT [Wikipedia:Metanephric_blastema]
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0003074 ! mesonephric duct
[Term]
id: UBERON:0003221
name: phalanx
def: "Long bones of fingers and toes[Obol]. In primates such as humans and monkeys, the thumb and big toe have two phalanges, while the other fingers and toes consist of three[WP]." [Wikipedia:Phalanx]
xref: MA:0000304
xref: ncithesaurus:Phalanx
is_a: UBERON:0002495 ! long bone
intersection_of: UBERON:0002495 ! long bone
intersection_of: part_of UBERON:0002544 ! digit
relationship: part_of UBERON:0002544 ! digit
[Term]
id: UBERON:0003224
name: syncytiotrophoblast of chorion
xref: EHDAA:156
is_a: UBERON:0000371 ! implied link automatically realized ! syncytiotrophoblast
intersection_of: UBERON:0000371 ! syncytiotrophoblast
intersection_of: part_of UBERON:0003124 ! chorion
[Term]
id: UBERON:0003225
name: primitive endoderm of inner cell mass
xref: EHDAA:44
is_a: UBERON:0003226 ! implied link automatically realized ! primitive endoderm of embryo
intersection_of: UBERON:0000417 ! primitive endoderm
intersection_of: part_of UBERON:0000087 ! inner cell mass
[Term]
id: UBERON:0003226
name: primitive endoderm of embryo
xref: EHDAA:79
is_a: UBERON:0000417 ! implied link automatically realized ! primitive endoderm
intersection_of: UBERON:0000417 ! primitive endoderm
intersection_of: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003229
name: epithelium of elbow
xref: EHDAA:4168
xref: EHDAA:6214
xref: HOG:0001044
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001461 ! elbow
[Term]
id: UBERON:0003230
name: epithelium of carpal region
xref: EHDAA:5198
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0003231
name: epithelium of hip
xref: EHDAA:5155
xref: EHDAA:6180
xref: HOG:0000779
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0003232
name: epithelium of knee
xref: EHDAA:5161
xref: EHDAA:6186
xref: HOG:0000810
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0003233
name: epithelium of shoulder
xref: EHDAA:4182
xref: EHDAA:6230
xref: HOG:0000761
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003234
name: epithelium of nasal cavity
xref: EHDAA:6803
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001707 ! nasal cavity
[Term]
id: UBERON:0003235
name: epithelium of upper jaw
xref: EHDAA:8027
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0003236
name: epithelium of lower jaw
xref: EHDAA:7999
xref: HOG:0000802
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0003238
name: epithelium of superior semicircular canal
xref: EHDAA:7806
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001841 ! anterior semicircular canal
[Term]
id: UBERON:0003239
name: epithelium of posterior semicircular canal
xref: EHDAA:7800
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001842 ! posterior semicircular canal
[Term]
id: UBERON:0003240
name: epithelium of lateral semicircular canal
xref: EHDAA:7794
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001843 ! lateral semicircular canal
[Term]
id: UBERON:0003241
name: epithelium of utricle
xref: EHDAA:4730
xref: HOG:0000634
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001853 ! utricle of membranous labyrinth
[Term]
id: UBERON:0003242
name: epithelium of saccule
xref: EHDAA:4724
xref: HOG:0000633
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001854 ! saccule of membranous labyrinth
[Term]
id: UBERON:0003243
name: epithelium of cochlear duct
xref: EHDAA:4722
xref: HOG:0000640
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth
[Term]
id: UBERON:0003244
name: epithelium of mammary gland
xref: EHDAA:6526
xref: FMA:74445
xref: HOG:0001088
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001911 ! lactiferous gland
[Term]
id: UBERON:0003246
name: epithelium of endolymphatic sac
xref: EHDAA:7765
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002223 ! endolymphatic sac
[Term]
id: UBERON:0003247
name: epithelium of forearm
xref: EHDAA:4174
xref: EHDAA:6220
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002386 ! lower segment of arm
[Term]
id: UBERON:0003248
name: epithelium of footplate
xref: EHDAA:5145
xref: EHDAA:6144
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002496 ! stapes base
[Term]
id: UBERON:0003249
name: epithelium of otic placode
xref: EHDAA:510
xref: HOG:0000636
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003069 ! otic placode
[Term]
id: UBERON:0003254
name: ectoderm of amnion
xref: EHDAA:138
is_a: UBERON:0003255 ! implied link automatically realized ! ectoderm of embryo
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0000305 ! amnion
[Term]
id: UBERON:0003255
name: ectoderm of embryo
xref: EHDAA:132
is_a: UBERON:0000924 ! implied link automatically realized ! ectoderm
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003256
name: endoderm of embryo
xref: EHDAA:94
is_a: UBERON:0000925 ! implied link automatically realized ! endoderm
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003257
name: endoderm of yolk sac
xref: EHDAA:166
is_a: UBERON:0003256 ! implied link automatically realized ! endoderm of embryo
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0003258
name: endoderm of foregut
xref: EHDAA:524
is_a: UBERON:0003256 ! implied link automatically realized ! endoderm of embryo
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001041 ! foregut
[Term]
id: UBERON:0003259
name: endoderm of midgut
xref: EHDAA:987
is_a: UBERON:0003256 ! implied link automatically realized ! endoderm of embryo
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001045 ! midgut
[Term]
id: UBERON:0003260
name: endoderm of hindgut
xref: EHDAA:979
is_a: UBERON:0003256 ! implied link automatically realized ! endoderm of embryo
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0001046 ! hindgut
[Term]
id: UBERON:0003261
name: endoderm of thyroid primordium
xref: EHDAA:956
is_a: UBERON:0003256 ! implied link automatically realized ! endoderm of embryo
intersection_of: UBERON:0000925 ! endoderm
intersection_of: part_of UBERON:0003091 ! thyroid primordium
[Term]
id: UBERON:0003262
name: mesoderm of amnion
xref: EHDAA:140
is_a: UBERON:0003263 ! implied link automatically realized ! mesoderm of embryo
intersection_of: UBERON:0000926 ! mesoderm
intersection_of: part_of UBERON:0000305 ! amnion
[Term]
id: UBERON:0003263
name: mesoderm of embryo
xref: EHDAA:183
is_a: UBERON:0000926 ! implied link automatically realized ! mesoderm
intersection_of: UBERON:0000926 ! mesoderm
intersection_of: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003264
name: mesoderm of yolk sac
xref: EHDAA:168
is_a: UBERON:0003263 ! implied link automatically realized ! mesoderm of embryo
intersection_of: UBERON:0000926 ! mesoderm
intersection_of: part_of UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0003265
name: mesoderm of chorion
xref: EHDAA:154
is_a: UBERON:0003263 ! implied link automatically realized ! mesoderm of embryo
intersection_of: UBERON:0000926 ! mesoderm
intersection_of: part_of UBERON:0003124 ! chorion
[Term]
id: UBERON:0003266
name: nerve of central nervous system
xref: EHDAA:2851
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0003267
name: tooth of upper jaw
xref: EHDAA:8045
xref: MA:0001909
is_a: UBERON:0001091 ! implied link automatically realized ! calcareous tooth
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0003268
name: tooth of lower jaw
xref: EHDAA:8009
xref: MA:0001907
is_a: UBERON:0001091 ! implied link automatically realized ! calcareous tooth
intersection_of: UBERON:0001091 ! calcareous tooth
intersection_of: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0003269
name: skeletal muscle of eye
xref: EHDAA:2923
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0003270
name: skeletal muscle of leg
xref: EHDAA:8291
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003271
name: skeletal muscle of pelvic girdle
xref: EHDAA:8326
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001271 ! pelvic girdle
[Term]
id: UBERON:0003272
name: skeletal muscle of arm
xref: EHDAA:8277
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003273
name: skeletal muscle of tongue
xref: EHDAA:9146
xref: HOG:0001390
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0003274
name: mesothelium of omental bursa
xref: EHDAA:2339
is_a: UBERON:0001136 ! implied link automatically realized ! mesothelium
intersection_of: UBERON:0001136 ! mesothelium
intersection_of: part_of UBERON:0001341 ! lesser sac
[Term]
id: UBERON:0003276
name: skeleton of embryo
xref: EHDAA:5047
is_a: UBERON:0001434 ! implied link automatically realized ! skeleton
intersection_of: UBERON:0001434 ! skeleton
intersection_of: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003277
name: skeleton of upper jaw
xref: EHDAA:8041
is_a: UBERON:0001704 ! implied link automatically realized ! viscerocranium
intersection_of: UBERON:0000075 ! subdivision of skeleton
intersection_of: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0003278
name: skeleton of lower jaw
xref: EHDAA:8005
is_a: UBERON:0001704 ! implied link automatically realized ! viscerocranium
intersection_of: UBERON:0000075 ! subdivision of skeleton
intersection_of: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0003279
name: endothelium of trachea
xref: EHDAA:3082
is_a: UBERON:0001901 ! implied link automatically realized ! epithelium of trachea
is_a: UBERON:0001986 ! implied link automatically realized ! endothelium
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0001005 ! trachea
[Term]
id: UBERON:0003280
name: endothelium of main bronchus
xref: EHDAA:3076
is_a: UBERON:0001986 ! implied link automatically realized ! endothelium
is_a: UBERON:0002340 ! implied link automatically realized ! epithelium of main bronchus
intersection_of: UBERON:0001986 ! endothelium
intersection_of: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0003281
name: mesentery of stomach
synonym: "mesogastium" EXACT [MA:0001617]
synonym: "mesogastrium" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html]
synonym: "stomach mesentery" EXACT [Obol:obol]
xref: EHDAA:2999
xref: MA:0001617
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002095 ! implied link automatically realized ! mesentery
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0000945 ! stomach
[Term]
id: UBERON:0003282
name: mesentery of heart
xref: EHDAA:432
is_a: UBERON:0002095 ! implied link automatically realized ! mesentery
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0003283
name: mesentery of oesophagus
xref: EHDAA:2943
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001975 ! implied link automatically realized ! serosa of esophagus
is_a: UBERON:0002095 ! implied link automatically realized ! mesentery
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0003284
name: mesentery of midgut
xref: EHDAA:3031
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002095 ! implied link automatically realized ! mesentery
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001045 ! midgut
[Term]
id: UBERON:0003285
name: limb of embryo
xref: EHDAA:1697
is_a: UBERON:0002101 ! implied link automatically realized ! limb
intersection_of: UBERON:0002101 ! limb
intersection_of: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003286
name: duodenum of foregut
xref: EHDAA:3830
is_a: UBERON:0002114 ! implied link automatically realized ! duodenum
intersection_of: UBERON:0002114 ! duodenum
intersection_of: part_of UBERON:0001041 ! foregut
[Term]
id: UBERON:0003287
name: duodenum of midgut
xref: EHDAA:3937
is_a: UBERON:0002114 ! implied link automatically realized ! duodenum
intersection_of: UBERON:0002114 ! duodenum
intersection_of: part_of UBERON:0001045 ! midgut
[Term]
id: UBERON:0003288
name: meninges of midbrain
xref: EHDAA:3708
xref: HOG:0000012
xref: MA:0001058
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0003289
name: meninges of telencephalon
xref: EHDAA:5476
xref: HOG:0000010
xref: MA:0000979
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0003290
name: meninges of diencephalon
xref: EHDAA:5458
xref: HOG:0000009
xref: MA:0000826
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003291
name: meninges of hindbrain
xref: EHDAA:3688
xref: HOG:0000011
xref: MA:0000987
is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0003292
name: meninges of spinal cord
xref: EHDAA:2865
xref: HOG:0000443
xref: MA:0001130
is_a: UBERON:0002360 ! implied link automatically realized ! meninx
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0003293
name: gland of oral region
xref: EHDAA:2181
is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0000166 ! oral opening
[Term]
id: UBERON:0003294
name: gland of foregut
xref: EHDAA:950
is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001041 ! foregut
[Term]
id: UBERON:0003295
name: gland of pharynx
xref: EHDAA:2967
is_a: UBERON:0002530 ! implied link automatically realized ! gland
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0003296
name: gland of diencephalon
xref: EHDAA:4475
is_a: UBERON:0002530 ! implied link automatically realized ! gland
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003297
name: gland of integumental system
xref: EHDAA:6522
is_a: UBERON:0002530 ! implied link automatically realized ! gland
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0002416 ! integumental system
[Term]
id: UBERON:0003298
name: roof plate of neural tube
xref: EHDAA:2891
xref: EHDAA:916
xref: ZFA:0001436
is_a: UBERON:0003054 ! implied link automatically realized ! roof plate
intersection_of: UBERON:0003054 ! roof plate
intersection_of: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0003299
name: roof plate of midbrain
xref: EHDAA:3712
xref: ZFA:0000355
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003054 ! implied link automatically realized ! roof plate
intersection_of: UBERON:0003054 ! roof plate
intersection_of: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0003300
name: roof plate of telencephalon
xref: EHDAA:3512
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003054 ! implied link automatically realized ! roof plate
intersection_of: UBERON:0003054 ! roof plate
intersection_of: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0003301
name: roof plate of diencephalon
xref: EHDAA:1979
xref: EHDAA:2657
xref: EHDAA:3494
xref: ZFA:0001358
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
is_a: UBERON:0003054 ! implied link automatically realized ! roof plate
intersection_of: UBERON:0003054 ! roof plate
intersection_of: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003302
name: roof plate of metencephalon
xref: EHDAA:5524
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
is_a: UBERON:0003054 ! implied link automatically realized ! roof plate
intersection_of: UBERON:0003054 ! roof plate
intersection_of: part_of UBERON:0001895 ! metencephalon
[Term]
id: UBERON:0003303
name: roof plate of medulla oblongata
xref: EHDAA:7614
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003054 ! implied link automatically realized ! roof plate
intersection_of: UBERON:0003054 ! roof plate
intersection_of: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0003304
name: blood island of mesoderm
xref: EHDAA:170
is_a: UBERON:0003061 ! implied link automatically realized ! blood island
intersection_of: UBERON:0003061 ! blood island
intersection_of: part_of UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003305
name: blood island of mesenchyme
xref: EHDAA:207
is_a: UBERON:0003061 ! implied link automatically realized ! blood island
intersection_of: UBERON:0003061 ! blood island
intersection_of: part_of UBERON:0003104 ! mesenchyme
[Term]
id: UBERON:0003306
name: floor plate of neural tube
xref: EHDAA:2871
xref: EHDAA:910
xref: ZFA:0001434
is_a: UBERON:0003079 ! implied link automatically realized ! floor plate
intersection_of: UBERON:0003079 ! floor plate
intersection_of: part_of UBERON:0001049 ! neural tube
[Term]
id: UBERON:0003307
name: floor plate of midbrain
xref: EHDAA:3698
xref: ZFA:0001677
is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain
is_a: UBERON:0003079 ! implied link automatically realized ! floor plate
intersection_of: UBERON:0003079 ! floor plate
intersection_of: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0003308
name: floor plate of telencephalon
xref: EHDAA:3498
xref: ZFA:0000914
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
is_a: UBERON:0003079 ! implied link automatically realized ! floor plate
intersection_of: UBERON:0003079 ! floor plate
intersection_of: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0003309
name: floor plate of diencephalon
xref: EHDAA:1975
xref: EHDAA:2651
xref: EHDAA:3480
xref: ZFA:0000871
is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon
is_a: UBERON:0003079 ! implied link automatically realized ! floor plate
intersection_of: UBERON:0003079 ! floor plate
intersection_of: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003310
name: floor plate of metencephalon
xref: EHDAA:5500
is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon
is_a: UBERON:0003079 ! implied link automatically realized ! floor plate
intersection_of: UBERON:0003079 ! floor plate
intersection_of: part_of UBERON:0001895 ! metencephalon
[Term]
id: UBERON:0003311
name: floor plate of medulla oblongata
xref: EHDAA:7590
is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata
is_a: UBERON:0003079 ! implied link automatically realized ! floor plate
intersection_of: UBERON:0003079 ! floor plate
intersection_of: part_of UBERON:0001896 ! medulla oblongata
[Term]
id: UBERON:0003312
name: mesenchyme of testis
xref: EHDAA:8150
xref: HOG:0001442
is_a: UBERON:0003855 ! implied link automatically realized ! gonad mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000473 ! testis
[Term]
id: UBERON:0003313
name: mesenchyme of embryo
xref: EHDAA:177
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000922 ! embryo
[Term]
id: UBERON:0003314
name: mesenchyme of eye
xref: EHDAA:2910
xref: HOG:0001084
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0003315
name: mesenchyme of ovary
xref: EHDAA:8128
xref: HOG:0001441
is_a: UBERON:0003855 ! implied link automatically realized ! gonad mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000992 ! ovary
[Term]
id: UBERON:0003316
name: mesenchyme of yolk sac
xref: EHDAA:205
xref: HOG:0000503
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001040 ! yolk sac
[Term]
id: UBERON:0003317
name: mesenchyme of incisor
xref: EHDAA:8015
xref: EHDAA:8051
is_a: UBERON:0003856 ! implied link automatically realized ! tooth mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001098 ! incisor tooth
[Term]
id: UBERON:0003318
name: mesenchyme of elbow
xref: EHDAA:4170
xref: EHDAA:6216
xref: HOG:0001075
is_a: UBERON:0003413 ! implied link automatically realized ! mesenchyme of arm
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001461 ! elbow
[Term]
id: UBERON:0003319
name: mesenchyme of carpal region
xref: EHDAA:5200
is_a: UBERON:0003413 ! implied link automatically realized ! mesenchyme of arm
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0003320
name: mesenchyme of hip
xref: EHDAA:5157
xref: EHDAA:6182
xref: HOG:0001029
is_a: UBERON:0003860 ! implied link automatically realized ! hindlimb mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0003321
name: mesenchyme of knee
xref: EHDAA:5163
xref: EHDAA:6188
xref: HOG:0001070
is_a: UBERON:0003860 ! implied link automatically realized ! hindlimb mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0003322
name: mesenchyme of shoulder
xref: EHDAA:4184
xref: EHDAA:6232
xref: HOG:0001035
is_a: UBERON:0003859 ! implied link automatically realized ! forelimb mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003323
name: mesenchyme of upper jaw
xref: EHDAA:8031
xref: HOG:0001099
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0003324
name: mesenchyme of lower jaw
xref: EHDAA:8003
xref: HOG:0001069
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0003325
name: mesenchyme of pinna
xref: EHDAA:8981
xref: HOG:0000747
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001757 ! pinna
[Term]
id: UBERON:0003326
name: mesenchyme of mammary gland
xref: EHDAA:6528
xref: HOG:0001087
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001911 ! lactiferous gland
[Term]
id: UBERON:0003327
name: mesenchyme of forearm
xref: EHDAA:4176
xref: EHDAA:6222
is_a: UBERON:0003413 ! implied link automatically realized ! mesenchyme of arm
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002386 ! lower segment of arm
[Term]
id: UBERON:0003328
name: mesenchyme of footplate
xref: EHDAA:5149
xref: EHDAA:6172
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002496 ! stapes base
[Term]
id: UBERON:0003329
name: submucosa of anal canal
xref: EMAPA:27535
xref: FMA:85399
is_a: UBERON:0000009 ! implied link automatically realized ! submucosa
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0000159 ! anal canal
[Term]
id: UBERON:0003330
name: submucosa of rectum
xref: EMAPA:27083
xref: EMAPA:27087
xref: EMAPA:27323
xref: EMAPA:27331
xref: FMA:15034
is_a: UBERON:0001205 ! implied link automatically realized ! submucosa of small intestine
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0003331
name: submucosa of colon
xref: EMAPA:27379
xref: FMA:14985
is_a: UBERON:0001208 ! implied link automatically realized ! submucosa of large intestine
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0003332
name: submucosa of duodenum
xref: EMAPA:27239
xref: FMA:14943
is_a: UBERON:0001205 ! implied link automatically realized ! submucosa of small intestine
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002114 ! duodenum
[Term]
id: UBERON:0003333
name: submucosa of jejunum
xref: EMAPA:27111
xref: EMAPA:27351
xref: FMA:14950
is_a: UBERON:0001205 ! implied link automatically realized ! submucosa of small intestine
intersection_of: UBERON:0000009 ! submucosa
intersection_of: part_of UBERON:0002115 ! jejunum
[Term]
id: UBERON:0003334
name: serosa of rectum
xref: EMAPA:27087
xref: EMAPA:27331
xref: FMA:15039
is_a: UBERON:0001206 ! implied link automatically realized ! serosa of small intestine
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0003335
name: serosa of colon
xref: EMAPA:27387
xref: FMA:14990
is_a: UBERON:0001209 ! implied link automatically realized ! serosa of large intestine
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0003336
name: serosa of duodenum
xref: EMAPA:27247
xref: FMA:14948
is_a: UBERON:0001206 ! implied link automatically realized ! serosa of small intestine
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0002114 ! duodenum
[Term]
id: UBERON:0003337
name: serosa of jejunum
xref: EMAPA:27115
xref: EMAPA:27359
xref: FMA:14955
is_a: UBERON:0001206 ! implied link automatically realized ! serosa of small intestine
intersection_of: UBERON:0000042 ! serous membrane
intersection_of: part_of UBERON:0002115 ! jejunum
[Term]
id: UBERON:0003338
name: ganglion of peripheral nervous system
xref: EMAPA:18371
xref: MA:0001161
is_a: UBERON:0000045 ! implied link automatically realized ! ganglion
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0003339
name: ganglion of central nervous system
xref: EMAPA:16658
xref: FMA:83843
is_a: UBERON:0000045 ! implied link automatically realized ! ganglion
intersection_of: UBERON:0000045 ! ganglion
intersection_of: part_of UBERON:0001017 ! central nervous system
[Term]
id: UBERON:0003340
name: urethra of urogenital sinus
xref: EMAPA:30891
is_a: UBERON:0000057 ! implied link automatically realized ! urethra
intersection_of: UBERON:0000057 ! urethra
intersection_of: part_of UBERON:0000164 ! urogenital sinus
[Term]
id: UBERON:0003341
name: urethra of urinary system
xref: EMAPA:30901
is_a: UBERON:0000057 ! implied link automatically realized ! urethra
intersection_of: UBERON:0000057 ! urethra
intersection_of: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0003342
name: mucosa of anal canal
xref: EMAPA:27531
xref: FMA:74654
is_a: UBERON:0000344 ! implied link automatically realized ! mucosa
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000159 ! anal canal
[Term]
id: UBERON:0003343
name: mucosa of oral region
xref: EMAPA:26937
is_a: UBERON:0003729 ! implied link automatically realized ! mouth mucosa
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000166 ! oral opening
[Term]
id: UBERON:0003346
name: mucosa of rectum
xref: EMAPA:27081
xref: EMAPA:27319
xref: FMA:15033
is_a: UBERON:0001204 ! implied link automatically realized ! mucosa of small intestine
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0003348
name: mucosa of duodenum
xref: EMAPA:27235
is_a: UBERON:0001204 ! implied link automatically realized ! mucosa of small intestine
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0002114 ! duodenum
[Term]
id: UBERON:0003350
name: epithelium of mucosa
xref: EMAPA:18668
xref: EMAPA:18835
xref: EMAPA:18857
xref: EMAPA:18862
xref: EMAPA:18868
xref: EMAPA:18893
xref: EMAPA:18899
xref: EMAPA:18912
xref: EMAPA:18917
xref: EMAPA:18927
xref: EMAPA:18934
xref: EMAPA:18941
xref: EMAPA:19078
xref: EMAPA:26961
xref: EMAPA:26985
xref: EMAPA:27019
xref: EMAPA:27033
xref: EMAPA:27047
xref: EMAPA:27061
xref: EMAPA:27075
xref: EMAPA:27089
xref: EMAPA:27103
xref: EMAPA:27131
xref: EMAPA:27145
xref: EMAPA:27159
xref: EMAPA:27175
xref: EMAPA:27191
xref: EMAPA:27207
xref: EMAPA:27219
xref: EMAPA:27229
xref: EMAPA:27307
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0000344 ! mucosa
[Term]
id: UBERON:0003351
name: epithelium of pharynx
xref: EMAPA:16708
xref: ZFA:0001174
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0003352
name: epithelium of midgut
xref: EMAPA:16569
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001045 ! midgut
[Term]
id: UBERON:0003353
name: epithelium of hindgut
xref: EMAPA:16717
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001046 ! hindgut
[Term]
id: UBERON:0003354
name: epithelium of rectum
xref: EMAPA:17898
xref: FMA:17510
xref: HOG:0001037
is_a: UBERON:0001902 ! implied link automatically realized ! epithelium of small intestine
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0003355
name: epithelium of incisor
xref: EMAPA:17919
xref: EMAPA:17940
is_a: UBERON:0003843 ! implied link automatically realized ! tooth epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001098 ! incisor tooth
[Term]
id: UBERON:0003356
name: epithelium of nasal septum
xref: EMAPA:18442
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001706 ! nasal septum
[Term]
id: UBERON:0003357
name: epithelium of tongue
xref: EMAPA:17881
xref: EMAPA:18872
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0003358
name: epithelium of soft palate
xref: EMAPA:18950
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001733 ! soft palate
[Term]
id: UBERON:0003359
name: epithelium of submandibular gland
xref: EMAPA:18813
xref: HOG:0000989
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001736 ! submandibular gland
[Term]
id: UBERON:0003360
name: epithelium of parotid
xref: EMAPA:18538
xref: HOG:0001434
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001831 ! parotid gland
[Term]
id: UBERON:0003361
name: epithelium of sublingual gland
xref: EMAPA:18810
xref: HOG:0001098
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001832 ! sublingual gland
[Term]
id: UBERON:0003362
name: epithelium of endolymphatic duct
xref: EMAPA:18582
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001860 ! endolymphatic duct
[Term]
id: UBERON:0003363
name: epithelium of ductus reuniens
xref: EMAPA:17289
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001861 ! ductus reuniens
[Term]
id: UBERON:0003364
name: epithelium of right lung
xref: EMAPA:17663
is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003365
name: epithelium of left lung
xref: EMAPA:17655
is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003366
name: epithelium of uterine horn
xref: EMAPA:29030
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002247 ! uterine horn
[Term]
id: UBERON:0003367
name: epithelium of vomeronasal organ
xref: EMAPA:18444
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002255 ! vomeronasal organ
[Term]
id: UBERON:0003368
name: epithelium of hard palate
xref: EMAPA:18953
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0003216 ! hard palate
[Term]
id: UBERON:0003371
name: ectoderm of leg
xref: EMAPA:17254
is_a: UBERON:0003255 ! implied link automatically realized ! ectoderm of embryo
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003372
name: ectoderm of arm
xref: EMAPA:17243
is_a: UBERON:0003255 ! implied link automatically realized ! ectoderm of embryo
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003373
name: ectoderm of footplate
xref: EMAPA:17250
is_a: UBERON:0003255 ! implied link automatically realized ! ectoderm of embryo
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0002496 ! stapes base
[Term]
id: UBERON:0003374
name: ectoderm of chorion
xref: EMAPA:16113
is_a: UBERON:0003255 ! implied link automatically realized ! ectoderm of embryo
intersection_of: UBERON:0000924 ! ectoderm
intersection_of: part_of UBERON:0003124 ! chorion
[Term]
id: UBERON:0003375
name: smooth muscle of eye
xref: EMAPA:18807
is_a: UBERON:0000020 ! implied link automatically realized ! sense organ
is_a: UBERON:0000953 ! implied link automatically realized ! visceral muscle
intersection_of: UBERON:0000953 ! visceral muscle
intersection_of: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0003376
name: smooth muscle of trachea
xref: EMAPA:19192
xref: FMA:262010
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0000953 ! implied link automatically realized ! visceral muscle
is_a: UBERON:0003830 ! implied link automatically realized ! thoracic segment muscle
is_a: UBERON:0003831 ! implied link automatically realized ! respiratory system muscle
intersection_of: UBERON:0000953 ! visceral muscle
intersection_of: part_of UBERON:0001005 ! trachea
[Term]
id: UBERON:0003377
name: nerve of peripheral nervous system
xref: EMAPA:25148
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0003378
name: cardiac muscle of auricular region
xref: EMAPA:17318
xref: EMAPA:17324
is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0001691 ! external ear
[Term]
id: UBERON:0003379
name: cardiac muscle of right atrium
xref: EMAPA:17326
xref: FMA:7282
is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002078 ! right atrium
[Term]
id: UBERON:0003380
name: cardiac muscle of left atrium
xref: EMAPA:17320
xref: FMA:7285
is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002079 ! left atrium
[Term]
id: UBERON:0003381
name: cardiac muscle of right ventricle
xref: EMAPA:17342
xref: FMA:83452
is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002080 ! right ventricle
[Term]
id: UBERON:0003382
name: cardiac muscle of left ventricle
xref: EMAPA:17339
xref: FMA:83453
is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002084 ! left ventricle
[Term]
id: UBERON:0003383
name: cardiac muscle of interventricular septum
xref: EMAPA:17335
xref: FMA:84084
is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002094 ! interventricular septum
[Term]
id: UBERON:0003384
name: skeletal muscle of pharynx
xref: EMAPA:18963
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0001042 ! pharynx
[Term]
id: UBERON:0003385
name: skeletal muscle of mesenchyme
xref: EMAPA:19066
xref: EMAPA:19071
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0003104 ! mesenchyme
[Term]
id: UBERON:0003386
name: smooth muscle of eye
xref: EMAPA:18807
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0000970 ! eye
[Term]
id: UBERON:0003387
name: smooth muscle of trachea
xref: EMAPA:19192
xref: FMA:262010
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue
intersection_of: UBERON:0001135 ! smooth muscle tissue
intersection_of: part_of UBERON:0001005 ! trachea
[Term]
id: UBERON:0003388
name: mesothelium of pericardial cavity
xref: EMAPA:18449
is_a: UBERON:0001136 ! implied link automatically realized ! mesothelium
intersection_of: UBERON:0001136 ! mesothelium
intersection_of: part_of UBERON:0001074 ! pericardial cavity
[Term]
id: UBERON:0003389
name: mesothelium of diaphragm
xref: EMAPA:18429
is_a: UBERON:0001136 ! implied link automatically realized ! mesothelium
intersection_of: UBERON:0001136 ! mesothelium
intersection_of: part_of UBERON:0001103 ! diaphragm
[Term]
id: UBERON:0003390
name: mesothelium of pleural cavity
xref: EMAPA:18463
is_a: UBERON:0001136 ! implied link automatically realized ! mesothelium
intersection_of: UBERON:0001136 ! mesothelium
intersection_of: part_of UBERON:0002402 ! pleural cavity
[Term]
id: UBERON:0003391
name: lip of upper jaw
xref: EMAPA:17925
is_a: UBERON:0001833 ! implied link automatically realized ! lip
intersection_of: UBERON:0001833 ! lip
intersection_of: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0003392
name: lip of lower jaw
xref: EMAPA:17909
is_a: UBERON:0001833 ! implied link automatically realized ! lip
intersection_of: UBERON:0001833 ! lip
intersection_of: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0003393
name: mesentery of urinary system
xref: EMAPA:17367
is_a: UBERON:0002095 ! implied link automatically realized ! mesentery
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001008 ! urinary system
[Term]
id: UBERON:0003394
name: mesentery of hindgut
xref: EMAPA:16718
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002095 ! implied link automatically realized ! mesentery
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001046 ! hindgut
[Term]
id: UBERON:0003395
name: mesentery of rectum
xref: EMAPA:18664
xref: EMAPA:18929
is_a: UBERON:0001170 ! implied link automatically realized ! mesentery of small intestine
is_a: UBERON:0003334 ! implied link automatically realized ! serosa of rectum
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001052 ! rectum
[Term]
id: UBERON:0003396
name: mesentery of colon
xref: EMAPA:18942
xref: FMA:14645
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002095 ! implied link automatically realized ! mesentery
is_a: UBERON:0003335 ! implied link automatically realized ! serosa of colon
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0003397
name: mesentery of duodenum
xref: EMAPA:19081
is_a: UBERON:0001170 ! implied link automatically realized ! mesentery of small intestine
is_a: UBERON:0003336 ! implied link automatically realized ! serosa of duodenum
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0002114 ! duodenum
[Term]
id: UBERON:0003398
name: mesentery of jejunum
synonym: "jejunal mesentery" EXACT []
synonym: "jejunum mesentery" EXACT []
synonym: "mesojejunum" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html]
xref: EMAPA:18670
xref: EMAPA:18937
xref: FMA:14651
is_a: UBERON:0001170 ! implied link automatically realized ! mesentery of small intestine
is_a: UBERON:0003337 ! implied link automatically realized ! serosa of jejunum
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0002115 ! jejunum
[Term]
id: UBERON:0003400
name: skin of hip
xref: EMAPA:18148
is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin
intersection_of: UBERON:0002097 ! skin
intersection_of: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0003401
name: skin of knee
xref: EMAPA:18151
is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin
intersection_of: UBERON:0002097 ! skin
intersection_of: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0003402
name: skin of shoulder
xref: EMAPA:18059
is_a: UBERON:0003531 ! implied link automatically realized ! forelimb skin
intersection_of: UBERON:0002097 ! skin
intersection_of: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003403
name: skin of forearm
xref: EMAPA:18056
xref: FMA:38265
is_a: UBERON:0002427 ! implied link automatically realized ! arm skin
intersection_of: UBERON:0002097 ! skin
intersection_of: part_of UBERON:0002386 ! lower segment of arm
[Term]
id: UBERON:0003404
name: lobar bronchus of right lung
xref: EMAPA:17664
is_a: UBERON:0002183 ! implied link automatically realized ! lobar bronchus
intersection_of: UBERON:0002183 ! lobar bronchus
intersection_of: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003405
name: lobar bronchus of left lung
xref: EMAPA:17656
is_a: UBERON:0002183 ! implied link automatically realized ! lobar bronchus
intersection_of: UBERON:0002183 ! lobar bronchus
intersection_of: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003406
name: cartilage of respiratory system
xref: EMAPA:18694
xref: MA:0001818
is_a: UBERON:0002418 ! implied link automatically realized ! cartilage
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003407
name: cartilage of nasal septum
xref: EMAPA:25091
is_a: UBERON:0002418 ! implied link automatically realized ! cartilage
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0001706 ! nasal septum
[Term]
id: UBERON:0003408
name: gland of gut
xref: EMAPA:18815
is_a: UBERON:0002530 ! implied link automatically realized ! gland
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001555 ! gut
[Term]
id: UBERON:0003409
name: gland of tongue
xref: EMAPA:25097
is_a: UBERON:0002530 ! implied link automatically realized ! gland
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0003410
name: gland of oropharynx
xref: EMAPA:25095
is_a: UBERON:0003295 ! implied link automatically realized ! gland of pharynx
intersection_of: UBERON:0002530 ! gland
intersection_of: part_of UBERON:0001729 ! oropharynx
[Term]
id: UBERON:0003411
name: mesenchyme of amnion
xref: EMAPA:16265
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000305 ! amnion
[Term]
id: UBERON:0003412
name: mesenchyme of leg
xref: EMAPA:17255
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003413
name: mesenchyme of arm
xref: EMAPA:17244
is_a: UBERON:0003859 ! implied link automatically realized ! forelimb mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003414
name: mesenchyme of mandible
xref: EMAPA:17912
is_a: UBERON:0003324 ! implied link automatically realized ! mesenchyme of lower jaw
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001684 ! mandible
[Term]
id: UBERON:0003415
name: mesenchyme of nasal septum
xref: EMAPA:18443
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001706 ! nasal septum
[Term]
id: UBERON:0003416
name: mesenchyme of tongue
xref: EMAPA:17882
xref: EMAPA:18878
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001723 ! tongue
[Term]
id: UBERON:0003417
name: mesenchyme of soft palate
xref: EMAPA:18951
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001733 ! soft palate
[Term]
id: UBERON:0003418
name: mesenchyme of submandibular gland
xref: EMAPA:18814
xref: HOG:0001110
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001736 ! submandibular gland
[Term]
id: UBERON:0003419
name: mesenchyme of parotid
xref: EMAPA:18539
xref: HOG:0001435
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001831 ! parotid gland
[Term]
id: UBERON:0003420
name: mesenchyme of sublingual gland
xref: EMAPA:18811
xref: HOG:0001106
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001832 ! sublingual gland
[Term]
id: UBERON:0003421
name: mesenchyme of vomeronasal organ
xref: EMAPA:18445
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002255 ! vomeronasal organ
[Term]
id: UBERON:0003422
name: mesenchyme of umbilical cord
xref: EMAPA:26127
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002331 ! umbilical cord
[Term]
id: UBERON:0003423
name: mesenchyme of chorion
xref: EMAPA:16266
is_a: UBERON:0003315 ! implied link automatically realized ! mesenchyme of ovary
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003124 ! chorion
[Term]
id: UBERON:0003424
name: mesenchyme of hard palate
xref: EMAPA:18954
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0003216 ! hard palate
[Term]
id: UBERON:0003425
name: renal lymph node
xref: MA:0002882
is_a: UBERON:0002507 ! implied link automatically realized ! abdominal lymph node
intersection_of: UBERON:0000029 ! lymph node
intersection_of: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0003426
name: dermis adipose tissue
xref: MA:0000798
is_a: UBERON:0001013 ! implied link automatically realized ! adipose tissue
intersection_of: UBERON:0001013 ! adipose tissue
intersection_of: part_of UBERON:0002067 ! dermis
[Term]
id: UBERON:0003427
name: abdominal fat pad
xref: MA:0000472
is_a: UBERON:0003916 ! implied link automatically realized ! fat pad
intersection_of: UBERON:0003916 ! fat pad
intersection_of: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003428
name: gonadal fat pad
xref: MA:0002547
is_a: UBERON:0003916 ! implied link automatically realized ! fat pad
intersection_of: UBERON:0003916 ! fat pad
intersection_of: part_of UBERON:0000991 ! gonad
[Term]
id: UBERON:0003429
name: abdomen nerve
xref: MA:0000521
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003430
name: neck nerve
xref: MA:0000588
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0003431
name: leg nerve
xref: MA:0000673
is_a: UBERON:0003440 ! implied link automatically realized ! limb nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003432
name: chest nerve
xref: MA:0000551
is_a: UBERON:0003824 ! implied link automatically realized ! thoracic segment nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0003433
name: arm nerve
xref: MA:0000595
is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003434
name: wrist nerve
xref: MA:0000637
is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0003435
name: foot digit nerve
xref: MA:0000649
is_a: UBERON:0003445 ! implied link automatically realized ! foot nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0003436
name: shoulder nerve
xref: MA:0000634
is_a: UBERON:0003432 ! implied link automatically realized ! chest nerve
is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003437
name: eyelid nerve
xref: MA:0001255
is_a: UBERON:0000941 ! implied link automatically realized ! optic nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0003438
name: iris nerve
xref: MA:0001291
is_a: UBERON:0000941 ! implied link automatically realized ! optic nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0003439
name: trunk nerve
xref: MA:0000515
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0003440
name: limb nerve
xref: MA:0000693
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003441
name: forelimb nerve
xref: MA:0000616
is_a: UBERON:0003440 ! implied link automatically realized ! limb nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003442
name: hindlimb nerve
xref: MA:0000664
is_a: UBERON:0003440 ! implied link automatically realized ! limb nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003443
name: thoracic cavity nerve
xref: MA:0000556
is_a: UBERON:0003824 ! implied link automatically realized ! thoracic segment nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003444
name: pelvis nerve
xref: MA:0000542
is_a: UBERON:0003439 ! implied link automatically realized ! trunk nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0003445
name: foot nerve
xref: MA:0000653
is_a: UBERON:0003442 ! implied link automatically realized ! hindlimb nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0003446
name: ankle nerve
xref: MA:0000640
is_a: UBERON:0003442 ! implied link automatically realized ! hindlimb nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002388 ! ankle
[Term]
id: UBERON:0003447
name: hand digit nerve
xref: MA:0000625
is_a: UBERON:0003448 ! implied link automatically realized ! hand nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0003448
name: hand nerve
xref: MA:0000629
is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0003449
name: tail intervertebral disc
xref: MA:0000698
is_a: UBERON:0001066 ! implied link automatically realized ! intervertebral disk
intersection_of: UBERON:0001066 ! intervertebral disk
intersection_of: part_of UBERON:0002415 ! tail
[Term]
id: UBERON:0003450
name: upper jaw incisor
xref: MA:0001601
xref: ncithesaurus:Upper_Jaw_Incisor
is_a: UBERON:0001098 ! implied link automatically realized ! incisor tooth
is_a: UBERON:0003267 ! implied link automatically realized ! tooth of upper jaw
intersection_of: UBERON:0001098 ! incisor tooth
intersection_of: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0003451
name: lower jaw incisor
xref: MA:0001600
xref: ncithesaurus:Lower_Jaw_Incisor
is_a: UBERON:0001098 ! implied link automatically realized ! incisor tooth
is_a: UBERON:0003268 ! implied link automatically realized ! tooth of lower jaw
intersection_of: UBERON:0001098 ! incisor tooth
intersection_of: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0003452
name: trabecula carnea cardiac muscle tissue
xref: FMA:84428
xref: MA:0002833
is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue
intersection_of: UBERON:0001133 ! cardiac muscle tissue
intersection_of: part_of UBERON:0002511 ! trabecula carnea
[Term]
id: UBERON:0003453
name: large intestine peyer's patch
xref: MA:0001550
is_a: UBERON:0003454 ! implied link automatically realized ! small intestine peyer's patch
intersection_of: UBERON:0001211 ! aggregated lymphoid follicle of small intestine
intersection_of: part_of UBERON:0001155 ! colon
[Term]
id: UBERON:0003454
name: small intestine peyer's patch
xref: MA:0001557
is_a: UBERON:0001211 ! implied link automatically realized ! aggregated lymphoid follicle of small intestine
intersection_of: UBERON:0001211 ! aggregated lymphoid follicle of small intestine
intersection_of: part_of UBERON:0002108 ! small intestine
[Term]
id: UBERON:0003455
name: inner renal medulla loop of henle
xref: MA:0002623
is_a: UBERON:0001288 ! implied link automatically realized ! loop of Henle
intersection_of: UBERON:0001288 ! loop of Henle
intersection_of: part_of UBERON:0001294 ! inner medulla of kidney
[Term]
id: UBERON:0003456
name: respiratory system lymphatic vessel
xref: MA:0001824
is_a: UBERON:0001473 ! implied link automatically realized ! lymphatic vessel
intersection_of: UBERON:0001473 ! lymphatic vessel
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003457
name: head bone
xref: MA:0000576
is_a: UBERON:0001474 ! implied link automatically realized ! bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003458
name: neck bone
xref: MA:0000584
is_a: UBERON:0001474 ! implied link automatically realized ! bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0003459
name: chest bone
xref: MA:0000547
is_a: UBERON:0003827 ! implied link automatically realized ! thoracic segment bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0003460
name: arm bone
xref: MA:0000592
is_a: UBERON:0002428 ! implied link automatically realized ! limb bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003461
name: shoulder bone
xref: MA:0000631
is_a: UBERON:0002428 ! implied link automatically realized ! limb bone
is_a: UBERON:0003459 ! implied link automatically realized ! chest bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003462
name: viscerocranium bone
xref: MA:0001482
is_a: UBERON:0003457 ! implied link automatically realized ! head bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0001704 ! viscerocranium
[Term]
id: UBERON:0003463
name: trunk bone
xref: MA:0000512
is_a: UBERON:0001474 ! implied link automatically realized ! bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0003464
name: hindlimb bone
xref: MA:0000660
is_a: UBERON:0002428 ! implied link automatically realized ! limb bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003465
name: chondrocranium bone
xref: MA:0001478
is_a: UBERON:0001474 ! implied link automatically realized ! bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002241 ! chondrocranium
[Term]
id: UBERON:0003466
name: lower arm bone
xref: MA:0000598
is_a: UBERON:0003460 ! implied link automatically realized ! arm bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002386 ! lower segment of arm
[Term]
id: UBERON:0003467
name: sesamoid bone of gastrocnemius
xref: MA:0001378
is_a: UBERON:0001479 ! implied link automatically realized ! sesamoid bone
intersection_of: UBERON:0001479 ! sesamoid bone
intersection_of: part_of UBERON:0001388 ! gastrocnemius
[Term]
id: UBERON:0003468
name: ureteric artery
xref: MA:0002074
is_a: UBERON:0001637 ! implied link automatically realized ! artery
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0000056 ! ureter
[Term]
id: UBERON:0003469
name: respiratory system artery
xref: MA:0001804
is_a: UBERON:0001637 ! implied link automatically realized ! artery
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003470
name: artery of upper lip
xref: MA:0001917
is_a: UBERON:0001637 ! implied link automatically realized ! artery
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001834 ! upper lip
[Term]
id: UBERON:0003471
name: artery of lower lip
xref: MA:0001916
is_a: UBERON:0001637 ! implied link automatically realized ! artery
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0001835 ! lower lip
[Term]
id: UBERON:0003472
name: cerebellar artery
xref: MA:0001933
xref: ncithesaurus:Cerebellar_Artery
is_a: UBERON:0001637 ! implied link automatically realized ! artery
is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum
is_a: UBERON:0003499 ! implied link automatically realized ! brain blood vessel
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0002037 ! cerebellum
[Term]
id: UBERON:0003473
name: thoracic cavity artery
xref: MA:0001902
is_a: UBERON:0001637 ! implied link automatically realized ! artery
is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003474
name: meningeal artery
xref: MA:0002001
is_a: UBERON:0001637 ! implied link automatically realized ! artery
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0002360 ! meninx
[Term]
id: UBERON:0003475
name: ureteric vein
xref: MA:0002250
is_a: UBERON:0001638 ! implied link automatically realized ! vein
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0000056 ! ureter
[Term]
id: UBERON:0003476
name: respiratory system venous blood vessel
xref: MA:0001809
xref: MA:0001810
is_a: UBERON:0001638 ! implied link automatically realized ! vein
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003477
name: vein of upper lip
xref: MA:0002255
is_a: UBERON:0001638 ! implied link automatically realized ! vein
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001834 ! upper lip
[Term]
id: UBERON:0003478
name: vein of lower lip
xref: MA:0002253
is_a: UBERON:0001638 ! implied link automatically realized ! vein
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0001835 ! lower lip
[Term]
id: UBERON:0003479
name: thoracic cavity vein
xref: MA:0001903
is_a: UBERON:0001638 ! implied link automatically realized ! vein
is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003480
name: vein of clitoris
xref: MA:0002252
is_a: UBERON:0001638 ! implied link automatically realized ! vein
is_a: UBERON:0003520 ! implied link automatically realized ! pelvis blood vessel
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002411 ! clitoris
[Term]
id: UBERON:0003481
name: tail vein
xref: MA:0002233
is_a: UBERON:0001638 ! implied link automatically realized ! vein
is_a: UBERON:0003524 ! implied link automatically realized ! tail blood vessel
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002415 ! tail
[Term]
id: UBERON:0003482
name: vein of trabecular bone
xref: MA:0002254
is_a: UBERON:0001638 ! implied link automatically realized ! vein
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0002483 ! trabecular bone
[Term]
id: UBERON:0003483
name: thymus lymphoid tissue
xref: MA:0002673
is_a: UBERON:0001744 ! implied link automatically realized ! lymphoid tissue
intersection_of: UBERON:0001744 ! lymphoid tissue
intersection_of: part_of UBERON:0002370 ! thymus
[Term]
id: UBERON:0003484
name: eye sebaceous gland
xref: MA:0002452
is_a: UBERON:0001821 ! implied link automatically realized ! sebaceous gland
intersection_of: UBERON:0001821 ! sebaceous gland
intersection_of: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0003485
name: vagina sebaceous gland
xref: MA:0001732
is_a: UBERON:0001821 ! implied link automatically realized ! sebaceous gland
intersection_of: UBERON:0001821 ! sebaceous gland
intersection_of: part_of UBERON:0000996 ! vagina
[Term]
id: UBERON:0003486
name: mammary gland sebaceous gland
xref: MA:0000794
is_a: UBERON:0001821 ! implied link automatically realized ! sebaceous gland
intersection_of: UBERON:0001821 ! sebaceous gland
intersection_of: part_of UBERON:0001911 ! lactiferous gland
[Term]
id: UBERON:0003487
name: skin sebaceous gland
xref: MA:0000149
is_a: UBERON:0001821 ! implied link automatically realized ! sebaceous gland
is_a: UBERON:0003297 ! implied link automatically realized ! gland of integumental system
intersection_of: UBERON:0001821 ! sebaceous gland
intersection_of: part_of UBERON:0002097 ! skin
[Term]
id: UBERON:0003488
name: abdominal mammary gland
xref: MA:0000787
is_a: UBERON:0001911 ! implied link automatically realized ! lactiferous gland
intersection_of: UBERON:0001911 ! lactiferous gland
intersection_of: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003489
name: respiratory system capillary endothelium
xref: MA:0001808
is_a: UBERON:0001915 ! implied link automatically realized ! endothelium of capillary
intersection_of: UBERON:0001915 ! endothelium of capillary
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003490
name: respiratory system reticular lamina
xref: MA:0001817
is_a: UBERON:0001967 ! implied link automatically realized ! reticular lamina
intersection_of: UBERON:0001967 ! reticular lamina
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003491
name: trachea reticular lamina
xref: MA:0001856
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003490 ! implied link automatically realized ! respiratory system reticular lamina
intersection_of: UBERON:0001967 ! reticular lamina
intersection_of: part_of UBERON:0001005 ! trachea
[Term]
id: UBERON:0003492
name: bronchus reticular lamina
xref: MA:0001834
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003490 ! implied link automatically realized ! respiratory system reticular lamina
intersection_of: UBERON:0001967 ! reticular lamina
intersection_of: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0003493
name: trachea reticular lamina
xref: MA:0001856
is_a: UBERON:0003491 ! implied link automatically realized ! trachea reticular lamina
intersection_of: UBERON:0001967 ! reticular lamina
intersection_of: part_of UBERON:0003126 ! vertebrate trachea
[Term]
id: UBERON:0003494
name: respiratory system venule
xref: MA:0001813
is_a: UBERON:0001979 ! implied link automatically realized ! venule
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
intersection_of: UBERON:0001979 ! venule
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003495
name: respiratory system arteriole
xref: MA:0001803
is_a: UBERON:0001980 ! implied link automatically realized ! arteriole
intersection_of: UBERON:0001980 ! arteriole
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003496
name: head blood vessel
xref: MA:0000575
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003497
name: abdomen blood vessel
xref: MA:0000518
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003498
name: heart blood vessel
xref: MA:0002483
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0003499
name: brain blood vessel
xref: MA:0002769
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003500
name: corneal blood vessel
xref: MA:0001241
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000964 ! cornea
[Term]
id: UBERON:0003501
name: retina blood vessel
xref: MA:0001317
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000966 ! retina
[Term]
id: UBERON:0003502
name: neck blood vessel
xref: MA:0000583
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0003503
name: leg blood vessel
xref: MA:0000669
is_a: UBERON:0003514 ! implied link automatically realized ! limb blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003504
name: respiratory system blood vessel
xref: MA:0001799
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003505
name: trachea blood vessel
xref: MA:0001852
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001005 ! trachea
[Term]
id: UBERON:0003506
name: chest blood vessel
xref: MA:0000549
is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0003507
name: arm blood vessel
xref: MA:0000591
is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003508
name: foot digit blood vessel
xref: MA:0000645
is_a: UBERON:0003521 ! implied link automatically realized ! foot blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0003509
name: arterial blood vessel
xref: MA:0000061
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001637 ! artery
[Term]
id: UBERON:0003510
name: eyelid blood vessel
xref: MA:0001250
is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0003511
name: iris blood vessel
xref: MA:0001290
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0001769 ! iris
[Term]
id: UBERON:0003512
name: lung blood vessel
xref: MA:0002457
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0003513
name: trunk blood vessel
xref: MA:0000511
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0003514
name: limb blood vessel
xref: MA:0000687
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003515
name: forelimb blood vessel
xref: MA:0000611
is_a: UBERON:0003514 ! implied link automatically realized ! limb blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003516
name: hindlimb blood vessel
xref: MA:0000659
is_a: UBERON:0003514 ! implied link automatically realized ! limb blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003517
name: kidney blood vessel
xref: MA:0001682
xref: ZFA:0005306
is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0003518
name: main bronchus blood vessel
xref: MA:0001844
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0003519
name: thoracic cavity blood vessel
xref: MA:0000554
is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003520
name: pelvis blood vessel
xref: MA:0000531
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0003521
name: foot blood vessel
xref: MA:0000642
is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0003522
name: hand digit blood vessel
xref: MA:0000621
is_a: UBERON:0003523 ! implied link automatically realized ! hand blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0003523
name: hand blood vessel
xref: MA:0000618
is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0003524
name: tail blood vessel
xref: MA:0000695
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002415 ! tail
[Term]
id: UBERON:0003525
name: trachea blood vessel
xref: MA:0001852
is_a: UBERON:0003505 ! implied link automatically realized ! trachea blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0003126 ! vertebrate trachea
[Term]
id: UBERON:0003526
name: respiratory system capillary
xref: MA:0001807
is_a: UBERON:0001982 ! implied link automatically realized ! capillary
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
intersection_of: UBERON:0001982 ! capillary
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003527
name: kidney capillary
xref: MA:0002586
is_a: UBERON:0001982 ! implied link automatically realized ! capillary
is_a: UBERON:0003517 ! implied link automatically realized ! kidney blood vessel
intersection_of: UBERON:0001982 ! capillary
intersection_of: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0003528
name: brain grey matter
xref: MA:0000810
is_a: UBERON:0002020 ! implied link automatically realized ! gray matter of neuraxis
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
intersection_of: UBERON:0002020 ! gray matter of neuraxis
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003529
name: respiratory system lymphatic vessel endothelium
xref: MA:0001825
is_a: UBERON:0002042 ! implied link automatically realized ! endothelium of lymphatic vessel
intersection_of: UBERON:0002042 ! endothelium of lymphatic vessel
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003530
name: foot digit skin
xref: FMA:37852
xref: MA:0000650
xref: ncithesaurus:Foot_Digit_Skin
is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin
intersection_of: UBERON:0002097 ! skin
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0003531
name: forelimb skin
xref: FMA:23101
xref: MA:0000617
is_a: UBERON:0002097 ! implied link automatically realized ! skin
intersection_of: UBERON:0002097 ! skin
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003532
name: hindlimb skin
xref: FMA:23102
xref: MA:0000665
is_a: UBERON:0002097 ! implied link automatically realized ! skin
intersection_of: UBERON:0002097 ! skin
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003533
name: hand digit skin
xref: FMA:38304
xref: MA:0000626
xref: ncithesaurus:Hand_Digit_Skin
is_a: UBERON:0001519 ! implied link automatically realized ! skin of hand
is_a: UBERON:0002427 ! implied link automatically realized ! arm skin
intersection_of: UBERON:0002097 ! skin
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0003534
name: tail skin
xref: MA:0000700
is_a: UBERON:0002097 ! implied link automatically realized ! skin
intersection_of: UBERON:0002097 ! skin
intersection_of: part_of UBERON:0002415 ! tail
[Term]
id: UBERON:0003535
name: vagus X nerve trunk
xref: FMA:6221
xref: MA:0001150
is_a: UBERON:0002100 ! implied link automatically realized ! trunk
intersection_of: UBERON:0002100 ! trunk
intersection_of: part_of UBERON:0001759 ! vagus nerve
[Term]
id: UBERON:0003536
name: right lung alveolar duct
xref: MA:0001785
xref: ncithesaurus:Right_Lung_Alveolar_Duct
is_a: UBERON:0002173 ! implied link automatically realized ! alveolar duct
intersection_of: UBERON:0002173 ! alveolar duct
intersection_of: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003537
name: left lung alveolar duct
xref: MA:0001776
xref: ncithesaurus:Left_Lung_Alveolar_Duct
is_a: UBERON:0002173 ! implied link automatically realized ! alveolar duct
intersection_of: UBERON:0002173 ! alveolar duct
intersection_of: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003538
name: right lung bronchiole
xref: MA:0001787
xref: ncithesaurus:Right_Lung_Bronchiole
is_a: UBERON:0002186 ! implied link automatically realized ! bronchiole
intersection_of: UBERON:0002186 ! bronchiole
intersection_of: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003539
name: left lung bronchiole
xref: MA:0001778
xref: ncithesaurus:Left_Lung_Bronchiole
is_a: UBERON:0002186 ! implied link automatically realized ! bronchiole
intersection_of: UBERON:0002186 ! bronchiole
intersection_of: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003540
name: right lung terminal bronchiole
xref: MA:0001789
xref: ncithesaurus:Right_Lung_Terminal_Bronchiole
is_a: UBERON:0002187 ! implied link automatically realized ! terminal bronchiole
is_a: UBERON:0003538 ! implied link automatically realized ! right lung bronchiole
intersection_of: UBERON:0002187 ! terminal bronchiole
intersection_of: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003541
name: left lung terminal bronchiole
xref: MA:0001780
xref: ncithesaurus:Left_Lung_Terminal_Bronchiole
is_a: UBERON:0002187 ! implied link automatically realized ! terminal bronchiole
is_a: UBERON:0003539 ! implied link automatically realized ! left lung bronchiole
intersection_of: UBERON:0002187 ! terminal bronchiole
intersection_of: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003542
name: right lung respiratory bronchiole
xref: MA:0001788
xref: ncithesaurus:Right_Lung_Respiratory_Bronchiole
is_a: UBERON:0002188 ! implied link automatically realized ! respiratory bronchiole
is_a: UBERON:0003538 ! implied link automatically realized ! right lung bronchiole
intersection_of: UBERON:0002188 ! respiratory bronchiole
intersection_of: part_of UBERON:0002167 ! right lung
[Term]
id: UBERON:0003543
name: left lung respiratory bronchiole
xref: MA:0001779
xref: ncithesaurus:Left_Lung_Respiratory_Bronchiole
is_a: UBERON:0002188 ! implied link automatically realized ! respiratory bronchiole
is_a: UBERON:0003539 ! implied link automatically realized ! left lung bronchiole
intersection_of: UBERON:0002188 ! respiratory bronchiole
intersection_of: part_of UBERON:0002168 ! left lung
[Term]
id: UBERON:0003544
name: brain white matter
xref: MA:0000820
xref: ncithesaurus:Brain_White_Matter
is_a: UBERON:0002316 ! implied link automatically realized ! white matter of neuraxis
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
intersection_of: UBERON:0002316 ! white matter of neuraxis
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003545
name: brainstem white matter
xref: MA:0002741
is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter
intersection_of: UBERON:0002316 ! white matter of neuraxis
intersection_of: part_of UBERON:0002298 ! brainstem
[Term]
id: UBERON:0003546
name: distal convoluted tubule macula densa
xref: MA:0001668
is_a: UBERON:0002335 ! implied link automatically realized ! macula densa
intersection_of: UBERON:0002335 ! macula densa
intersection_of: part_of UBERON:0001292 ! distal convoluted tubule
[Term]
id: UBERON:0003547
name: brain meninx
xref: HOG:0000013
xref: MA:0000813
is_a: UBERON:0002360 ! implied link automatically realized ! meninx
is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003548
name: forebrain meninges
xref: MA:0000883
is_a: UBERON:0002780 ! implied link automatically realized ! regional part of forebrain
is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx
intersection_of: UBERON:0002360 ! meninx
intersection_of: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0003549
name: brain pia mater
xref: MA:0000816
xref: ncithesaurus:Brain_Pia_Mater
is_a: UBERON:0002361 ! implied link automatically realized ! pia mater
is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0000955 ! brain
[Term]
id: UBERON:0003550
name: forebrain pia mater
xref: MA:0000886
is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges
is_a: UBERON:0003549 ! implied link automatically realized ! brain pia mater
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0003551
name: midbrain pia mater
xref: MA:0001061
is_a: UBERON:0003288 ! implied link automatically realized ! meninges of midbrain
is_a: UBERON:0003549 ! implied link automatically realized ! brain pia mater
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0003552
name: telencephalon pia mater
xref: MA:0000982
is_a: UBERON:0003289 ! implied link automatically realized ! meninges of telencephalon
is_a: UBERON:0003550 ! implied link automatically realized ! forebrain pia mater
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0003553
name: diencephalon pia mater
xref: MA:0000829
is_a: UBERON:0003290 ! implied link automatically realized ! meninges of diencephalon
is_a: UBERON:0003550 ! implied link automatically realized ! forebrain pia mater
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003554
name: hindbrain pia mater
xref: MA:0000990
is_a: UBERON:0003291 ! implied link automatically realized ! meninges of hindbrain
is_a: UBERON:0003549 ! implied link automatically realized ! brain pia mater
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0003555
name: spinal cord pia mater
xref: MA:0001133
xref: ncithesaurus:Spinal_Cord_Pia_Mater
is_a: UBERON:0002361 ! implied link automatically realized ! pia mater
is_a: UBERON:0003292 ! implied link automatically realized ! meninges of spinal cord
intersection_of: UBERON:0002361 ! pia mater
intersection_of: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0003556
name: forebrain arachnoid mater
xref: MA:0000884
is_a: UBERON:0002362 ! implied link automatically realized ! arachnoid mater
is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges
intersection_of: UBERON:0002362 ! arachnoid mater
intersection_of: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0003557
name: midbrain arachnoid mater
xref: MA:0001059
is_a: UBERON:0002362 ! implied link automatically realized ! arachnoid mater
is_a: UBERON:0003288 ! implied link automatically realized ! meninges of midbrain
intersection_of: UBERON:0002362 ! arachnoid mater
intersection_of: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0003558
name: diencephalon arachnoid mater
xref: MA:0000827
is_a: UBERON:0003290 ! implied link automatically realized ! meninges of diencephalon
is_a: UBERON:0003556 ! implied link automatically realized ! forebrain arachnoid mater
intersection_of: UBERON:0002362 ! arachnoid mater
intersection_of: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003559
name: hindbrain arachnoid mater
xref: MA:0000988
is_a: UBERON:0002362 ! implied link automatically realized ! arachnoid mater
is_a: UBERON:0003291 ! implied link automatically realized ! meninges of hindbrain
intersection_of: UBERON:0002362 ! arachnoid mater
intersection_of: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0003560
name: spinal cord arachnoid mater
xref: MA:0001131
is_a: UBERON:0002362 ! implied link automatically realized ! arachnoid mater
is_a: UBERON:0003292 ! implied link automatically realized ! meninges of spinal cord
intersection_of: UBERON:0002362 ! arachnoid mater
intersection_of: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0003561
name: forebrain dura mater
xref: MA:0000885
is_a: UBERON:0002092 ! implied link automatically realized ! cranial dura mater
is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0001890 ! forebrain
[Term]
id: UBERON:0003562
name: midbrain dura mater
xref: MA:0001060
is_a: UBERON:0002092 ! implied link automatically realized ! cranial dura mater
is_a: UBERON:0003288 ! implied link automatically realized ! meninges of midbrain
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0001891 ! midbrain
[Term]
id: UBERON:0003563
name: telencephalon dura mater
xref: MA:0000981
is_a: UBERON:0003289 ! implied link automatically realized ! meninges of telencephalon
is_a: UBERON:0003561 ! implied link automatically realized ! forebrain dura mater
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0001893 ! telencephalon
[Term]
id: UBERON:0003564
name: diencephalon dura mater
xref: MA:0000828
is_a: UBERON:0003290 ! implied link automatically realized ! meninges of diencephalon
is_a: UBERON:0003561 ! implied link automatically realized ! forebrain dura mater
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0001894 ! diencephalon
[Term]
id: UBERON:0003565
name: hindbrain dura mater
xref: MA:0000989
is_a: UBERON:0002092 ! implied link automatically realized ! cranial dura mater
is_a: UBERON:0003291 ! implied link automatically realized ! meninges of hindbrain
intersection_of: UBERON:0002363 ! dura mater
intersection_of: part_of UBERON:0002028 ! hindbrain
[Term]
id: UBERON:0003566
name: head connective tissue
xref: MA:0000577
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003567
name: abdomen connective tissue
xref: MA:0000519
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003568
name: neck connective tissue
xref: MA:0000585
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0003569
name: leg connective tissue
xref: MA:0000671
is_a: UBERON:0003587 ! implied link automatically realized ! limb connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000978 ! leg
[Term]
id: UBERON:0003570
name: respiratory system connective tissue
xref: MA:0001814
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003571
name: trachea connective tissue
xref: MA:0001853
is_a: UBERON:0003580 ! implied link automatically realized ! lower respiratory tract connective tissue
is_a: UBERON:0003593 ! implied link automatically realized ! thoracic cavity connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001005 ! trachea
[Term]
id: UBERON:0003572
name: chest connective tissue
xref: MA:0000550
is_a: UBERON:0003837 ! implied link automatically realized ! thoracic segment connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001443 ! chest
[Term]
id: UBERON:0003573
name: arm connective tissue
xref: MA:0000593
is_a: UBERON:0003588 ! implied link automatically realized ! forelimb connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003574
name: elbow connective tissue
xref: MA:0000609
is_a: UBERON:0003573 ! implied link automatically realized ! arm connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001461 ! elbow
[Term]
id: UBERON:0003575
name: wrist connective tissue
xref: MA:0000636
is_a: UBERON:0003573 ! implied link automatically realized ! arm connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001462 ! wrist
[Term]
id: UBERON:0003576
name: hip connective tissue
xref: MA:0000656
is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0003577
name: knee connective tissue
xref: MA:0000667
is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001465 ! knee
[Term]
id: UBERON:0003578
name: foot digit connective tissue
xref: MA:0000647
is_a: UBERON:0003595 ! implied link automatically realized ! foot connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0003579
name: shoulder connective tissue
xref: MA:0000632
is_a: UBERON:0003572 ! implied link automatically realized ! chest connective tissue
is_a: UBERON:0003588 ! implied link automatically realized ! forelimb connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003580
name: lower respiratory tract connective tissue
xref: MA:0002409
is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001558 ! lower respiratory tract
[Term]
id: UBERON:0003581
name: eyelid connective tissue
xref: MA:0001251
xref: ncithesaurus:Eyelid_Connective_Tissue
is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0003582
name: nasopharynx connective tissue
xref: MA:0001864
is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001728 ! nasopharynx
[Term]
id: UBERON:0003583
name: larynx connective tissue
xref: MA:0001754
is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0003584
name: mammary gland connective tissue
xref: FMA:74479
xref: MA:0002897
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0001911 ! lactiferous gland
[Term]
id: UBERON:0003585
name: dermis connective tissue
xref: MA:0000799
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002067 ! dermis
[Term]
id: UBERON:0003586
name: trunk connective tissue
xref: MA:0000513
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0003587
name: limb connective tissue
xref: MA:0000689
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003588
name: forelimb connective tissue
xref: MA:0000613
is_a: UBERON:0003587 ! implied link automatically realized ! limb connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003589
name: hindlimb connective tissue
xref: MA:0000661
is_a: UBERON:0003587 ! implied link automatically realized ! limb connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003590
name: main bronchus connective tissue
xref: MA:0001845
is_a: UBERON:0003592 ! implied link automatically realized ! bronchus connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002182 ! main bronchus
[Term]
id: UBERON:0003591
name: lobar bronchus connective tissue
xref: MA:0001841
is_a: UBERON:0000114 ! implied link automatically realized ! lung connective tissue
is_a: UBERON:0003592 ! implied link automatically realized ! bronchus connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002183 ! lobar bronchus
[Term]
id: UBERON:0003592
name: bronchus connective tissue
xref: MA:0001831
xref: ncithesaurus:Bronchus_Connective_Tissue
is_a: UBERON:0003580 ! implied link automatically realized ! lower respiratory tract connective tissue
is_a: UBERON:0003593 ! implied link automatically realized ! thoracic cavity connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0003593
name: thoracic cavity connective tissue
xref: MA:0000555
is_a: UBERON:0003837 ! implied link automatically realized ! thoracic segment connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003594
name: pelvis connective tissue
xref: MA:0000533
is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0003595
name: foot connective tissue
xref: MA:0000644
is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002387 ! foot
[Term]
id: UBERON:0003596
name: ankle connective tissue
xref: MA:0000639
is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002388 ! ankle
[Term]
id: UBERON:0003597
name: hand digit connective tissue
xref: MA:0000623
is_a: UBERON:0003598 ! implied link automatically realized ! hand connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0003598
name: hand connective tissue
xref: MA:0000620
is_a: UBERON:0003573 ! implied link automatically realized ! arm connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002398 ! hand
[Term]
id: UBERON:0003599
name: tail connective tissue
xref: MA:0000697
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002415 ! tail
[Term]
id: UBERON:0003600
name: trachea connective tissue
xref: MA:0001853
is_a: UBERON:0003571 ! implied link automatically realized ! trachea connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0003126 ! vertebrate trachea
[Term]
id: UBERON:0003601
name: neck cartilage
xref: MA:0000586
is_a: UBERON:0002418 ! implied link automatically realized ! cartilage
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0000974 ! neck
[Term]
id: UBERON:0003602
name: trachea cartilage
xref: MA:0001857
xref: ncithesaurus:Trachea_Cartilage
is_a: UBERON:0003603 ! implied link automatically realized ! lower respiratory tract cartilage
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0001005 ! trachea
[Term]
id: UBERON:0003603
name: lower respiratory tract cartilage
xref: MA:0001819
xref: ncithesaurus:Lower_Respiratory_Tract_Cartilage
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0003406 ! implied link automatically realized ! cartilage of respiratory system
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0001558 ! lower respiratory tract
[Term]
id: UBERON:0003604
name: trachea cartilage
xref: MA:0001857
xref: ncithesaurus:Trachea_Cartilage
is_a: UBERON:0003602 ! implied link automatically realized ! trachea cartilage
intersection_of: UBERON:0002418 ! cartilage
intersection_of: part_of UBERON:0003126 ! vertebrate trachea
[Term]
id: UBERON:0003605
name: eye skin gland
xref: MA:0002451
is_a: UBERON:0002419 ! implied link automatically realized ! skin gland
intersection_of: UBERON:0002419 ! skin gland
intersection_of: part_of UBERON:0000019 ! camera-type eye
[Term]
id: UBERON:0003606
name: limb long bone
xref: MA:0000298
is_a: UBERON:0002428 ! implied link automatically realized ! limb bone
is_a: UBERON:0002495 ! implied link automatically realized ! long bone
intersection_of: UBERON:0002495 ! long bone
intersection_of: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003607
name: forelimb long bone
xref: MA:0000299
is_a: UBERON:0003606 ! implied link automatically realized ! limb long bone
intersection_of: UBERON:0002495 ! long bone
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003608
name: hindlimb long bone
xref: MA:0000300
is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone
is_a: UBERON:0003606 ! implied link automatically realized ! limb long bone
intersection_of: UBERON:0002495 ! long bone
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003609
name: aorta elastic tissue
xref: MA:0002859
is_a: UBERON:0003614 ! implied link automatically realized ! blood vessel elastic tissue
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0000947 ! aorta
[Term]
id: UBERON:0003610
name: heart elastic tissue
xref: MA:0002858
is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue
is_a: UBERON:0003613 ! implied link automatically realized ! cardiovascular system elastic tissue
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0000948 ! heart
[Term]
id: UBERON:0003611
name: respiratory system elastic tissue
xref: MA:0001820
is_a: UBERON:0002521 ! implied link automatically realized ! elastic tissue
is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003612
name: trachea elastic tissue
xref: MA:0001861
is_a: UBERON:0003571 ! implied link automatically realized ! trachea connective tissue
is_a: UBERON:0003611 ! implied link automatically realized ! respiratory system elastic tissue
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0001005 ! trachea
[Term]
id: UBERON:0003613
name: cardiovascular system elastic tissue
xref: MA:0002857
is_a: UBERON:0002521 ! implied link automatically realized ! elastic tissue
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0001009 ! circulatory system
[Term]
id: UBERON:0003614
name: blood vessel elastic tissue
xref: MA:0002856
is_a: UBERON:0003613 ! implied link automatically realized ! cardiovascular system elastic tissue
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0003615
name: lung elastic tissue
xref: MA:0002860
is_a: UBERON:0000114 ! implied link automatically realized ! lung connective tissue
is_a: UBERON:0003611 ! implied link automatically realized ! respiratory system elastic tissue
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0002048 ! lung
[Term]
id: UBERON:0003616
name: bronchus elastic tissue
xref: MA:0001838
xref: ncithesaurus:Bronchus_Elastic_Tissue
is_a: UBERON:0003592 ! implied link automatically realized ! bronchus connective tissue
is_a: UBERON:0003611 ! implied link automatically realized ! respiratory system elastic tissue
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0002185 ! bronchus
[Term]
id: UBERON:0003617
name: trachea elastic tissue
xref: MA:0001861
is_a: UBERON:0003600 ! implied link automatically realized ! trachea connective tissue
is_a: UBERON:0003612 ! implied link automatically realized ! trachea elastic tissue
intersection_of: UBERON:0002521 ! elastic tissue
intersection_of: part_of UBERON:0003126 ! vertebrate trachea
[Term]
id: UBERON:0003618
name: aorta tunica media
xref: FMA:74433
xref: MA:0002903
is_a: UBERON:0002522 ! implied link automatically realized ! tunica media
intersection_of: UBERON:0002522 ! tunica media
intersection_of: part_of UBERON:0000947 ! aorta
[Term]
id: UBERON:0003619
name: aorta tunica intima
xref: FMA:74419
xref: MA:0002904
is_a: UBERON:0002523 ! implied link automatically realized ! tunica intima
intersection_of: UBERON:0002523 ! tunica intima
intersection_of: part_of UBERON:0000947 ! aorta
[Term]
id: UBERON:0003620
name: hand digit 1 phalanx
xref: MA:0001389
xref: ncithesaurus:Hand_Digit_1_Phalanx
is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0001463 ! hand digit 1
[Term]
id: UBERON:0003622
name: hand digit 2
def: "2nd digit of the hand in mouse and human and homologs." [Wikipedia:Index_finger]
comment: comment: This class represents all instances of the 2nd digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
synonym: "2nd digit of hand" EXACT []
synonym: "2nd finger" EXACT []
synonym: "index finger" NARROW []
synonym: "second finger" EXACT []
xref: FMA:24946
xref: MA:0000455
xref: ncithesaurus:Hand_Digit_2
is_a: UBERON:0002389 ! finger
[Term]
id: UBERON:0003623
name: hand digit 3
def: "3rd digit of the hand in mouse and human and homologs." [Wikipedia:Middle_finger]
comment: comment: This class represents all instances of the 3rd digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
synonym: "3rd digit of hand" EXACT []
synonym: "3rd finger" EXACT []
synonym: "middle finger" NARROW []
synonym: "third finger" EXACT []
xref: FMA:24947
xref: MA:0000456
xref: ncithesaurus:Hand_Digit_3
is_a: UBERON:0002389 ! finger
[Term]
id: UBERON:0003624
name: hand digit 4
def: "4th digit of the hand in mouse and human and homologs." [Wikipedia:Ring_finger]
comment: comment: This class represents all instances of the 4th digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
synonym: "4th digit of hand" EXACT []
synonym: "4th finger" EXACT []
synonym: "fourth finger" EXACT []
synonym: "ring finger" NARROW []
xref: FMA:24948
xref: MA:0000457
xref: ncithesaurus:Hand_Digit_4
is_a: UBERON:0002389 ! finger
[Term]
id: UBERON:0003625
name: hand digit 5
def: "5th digit of the hand in mouse and human and homologs." [Wikipedia:Little_finger]
comment: comment: This class represents all instances of the 5th digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/
synonym: "5th digit of hand" EXACT []
synonym: "5th finger" EXACT []
synonym: "fifth finger" EXACT []
synonym: "little finger" NARROW []
xref: FMA:24949
xref: MA:0000458
xref: ncithesaurus:Hand_Digit_5
is_a: UBERON:0002389 ! finger
[Term]
id: UBERON:0003631
name: foot digit 1
def: "1st digit of the foot in mouse and human and homologs." [Wikipedia:Big_toe]
synonym: "big toe" NARROW []
xref: FMA:25047
xref: MA:0000465
xref: ncithesaurus:Foot_Digit_1
is_a: UBERON:0001466 ! toe
[Term]
id: UBERON:0003632
name: foot digit 2
def: "2nd digit of the foot in mouse and human and homologs." [UBERON:cjm]
synonym: "2nd toe" NARROW []
xref: FMA:25048
xref: MA:0000466
xref: ncithesaurus:Foot_Digit_2
is_a: UBERON:0001466 ! toe
[Term]
id: UBERON:0003633
name: foot digit 3
def: "3rd digit of the foot in mouse and human and homologs." [UBERON:cjm]
synonym: "3rd toe" NARROW []
xref: FMA:25051
xref: MA:0000467
xref: ncithesaurus:Foot_Digit_3
is_a: UBERON:0001466 ! toe
[Term]
id: UBERON:0003634
name: foot digit 4
def: "4th digit of the foot in mouse and human and homologs." [UBERON:cjm]
synonym: "4th toe" NARROW []
xref: FMA:25052
xref: MA:0000468
xref: ncithesaurus:Foot_Digit_4
is_a: UBERON:0001466 ! toe
[Term]
id: UBERON:0003635
name: foot digit 5
def: "5th digit of the foot in mouse and human and homologs." [UBERON:cjm]
synonym: "5th toe" NARROW []
synonym: "little toe" NARROW []
xref: FMA:25053
xref: MA:0000469
xref: ncithesaurus:Foot_Digit_5
is_a: UBERON:0001466 ! toe
[Term]
id: UBERON:0003636
name: hand digit 2 phalanx
xref: MA:0001390
xref: ncithesaurus:Hand_Digit_2_Phalanx
is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003622 ! hand digit 2
[Term]
id: UBERON:0003637
name: hand digit 3 phalanx
xref: MA:0001391
xref: ncithesaurus:Hand_Digit_3_Phalanx
is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003623 ! hand digit 3
[Term]
id: UBERON:0003638
name: hand digit 4 phalanx
xref: MA:0001392
xref: ncithesaurus:Hand_Digit_4_Phalanx
is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003624 ! hand digit 4
[Term]
id: UBERON:0003639
name: hand digit 5 phalanx
xref: MA:0001393
xref: ncithesaurus:Hand_Digit_5_Phalanx
is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003625 ! hand digit 5
[Term]
id: UBERON:0003640
name: foot digit 1 phalanx
xref: MA:0001381
xref: MA:0001384
xref: MA:0001385
xref: ncithesaurus:Foot_Digit_1_Phalanx
is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003631 ! foot digit 1
[Term]
id: UBERON:0003641
name: foot digit 2 phalanx
xref: MA:0001382
xref: ncithesaurus:Foot_Digit_2_Phalanx
is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003632 ! foot digit 2
[Term]
id: UBERON:0003642
name: foot digit 3 phalanx
xref: MA:0001383
xref: ncithesaurus:Foot_Digit_3_Phalanx
is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003633 ! foot digit 3
[Term]
id: UBERON:0003643
name: respiratory system arterial blood vessel
xref: MA:0001800
is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel
is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel
intersection_of: UBERON:0003509 ! arterial blood vessel
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003644
name: kidney arterial blood vessel
xref: MA:0002578
is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel
is_a: UBERON:0003517 ! implied link automatically realized ! kidney blood vessel
intersection_of: UBERON:0003509 ! arterial blood vessel
intersection_of: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0003645
name: metacarpal bone of digit 1
xref: FMA:23899
xref: MA:0001364
is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: part_of UBERON:0001463 ! hand digit 1
[Term]
id: UBERON:0003646
name: metacarpal bone of digit 2
xref: FMA:23900
xref: MA:0001365
is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: part_of UBERON:0003622 ! hand digit 2
[Term]
id: UBERON:0003647
name: metacarpal bone of digit 3
xref: FMA:23901
xref: MA:0001366
is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: part_of UBERON:0003623 ! hand digit 3
[Term]
id: UBERON:0003648
name: metacarpal bone of digit 4
xref: FMA:23902
xref: MA:0001367
is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: part_of UBERON:0003624 ! hand digit 4
[Term]
id: UBERON:0003649
name: metacarpal bone of digit 5
xref: FMA:23903
xref: MA:0001368
is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone
intersection_of: UBERON:0002374 ! metacarpal bone
intersection_of: part_of UBERON:0003625 ! hand digit 5
[Term]
id: UBERON:0003650
name: metatarsal bone of digit 1
xref: FMA:24502
xref: MA:0001369
is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: part_of UBERON:0003631 ! foot digit 1
[Term]
id: UBERON:0003651
name: metatarsal bone of digit 2
xref: FMA:24503
xref: MA:0001370
is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: part_of UBERON:0003632 ! foot digit 2
[Term]
id: UBERON:0003652
name: metatarsal bone of digit 3
xref: FMA:24504
xref: MA:0001371
is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: part_of UBERON:0003633 ! foot digit 3
[Term]
id: UBERON:0003653
name: metatarsal bone of digit 4
xref: FMA:24505
xref: MA:0001372
is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: part_of UBERON:0003634 ! foot digit 4
[Term]
id: UBERON:0003654
name: metatarsal bone of digit 5
xref: FMA:24506
xref: MA:0001373
is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone
intersection_of: UBERON:0001448 ! metatarsal bone
intersection_of: part_of UBERON:0003635 ! foot digit 5
[Term]
id: UBERON:0003655
name: molar tooth
xref: FMA:55638
xref: MA:0000350
xref: ncithesaurus:Molar_Tooth
is_a: UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003656
name: carpal/tarsal bone
xref: MA:0000295
is_a: UBERON:0002428 ! limb bone
[Term]
id: UBERON:0003657
name: limb joint
xref: MA:0000691
is_a: UBERON:0000982 ! implied link automatically realized ! joint
intersection_of: UBERON:0000982 ! joint
intersection_of: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003658
name: hip muscle
xref: MA:0000657
is_a: UBERON:0001497 ! implied link automatically realized ! muscle of pelvic girdle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001464 ! hip
[Term]
id: UBERON:0003659
name: foot digit muscle
xref: MA:0000648
is_a: UBERON:0001498 ! implied link automatically realized ! muscle of foot
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001466 ! toe
[Term]
id: UBERON:0003660
name: eyelid muscle
xref: MA:0000269
xref: ncithesaurus:Eyelid_Muscle
is_a: UBERON:0000020 ! implied link automatically realized ! sense organ
is_a: UBERON:0002376 ! implied link automatically realized ! muscle of head
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001711 ! eyelid
[Term]
id: UBERON:0003661
name: limb muscle
xref: MA:0000692
is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002101 ! limb
[Term]
id: UBERON:0003662
name: forelimb muscle
xref: BTO:0000479
xref: MA:0000615
is_a: UBERON:0003661 ! implied link automatically realized ! limb muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003663
name: hindlimb muscle
xref: EFO:0001928
xref: MA:0000663
is_a: UBERON:0003661 ! implied link automatically realized ! limb muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003664
name: hand digit muscle
xref: MA:0000624
is_a: UBERON:0001500 ! implied link automatically realized ! muscle of hand
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002389 ! finger
[Term]
id: UBERON:0003665
name: tail muscle
xref: BTO:0001905
xref: MA:0000699
is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002415 ! tail
[Term]
id: UBERON:0003666
name: upper jaw molar
xref: MA:0001603
xref: ncithesaurus:Upper_Jaw_Molar
is_a: UBERON:0003267 ! implied link automatically realized ! tooth of upper jaw
is_a: UBERON:0003655 ! implied link automatically realized ! molar tooth
intersection_of: UBERON:0003655 ! molar tooth
intersection_of: part_of UBERON:0001709 ! upper jaw
[Term]
id: UBERON:0003667
name: lower jaw molar
xref: MA:0001602
xref: ncithesaurus:Lower_Jaw_Molar
is_a: UBERON:0003268 ! implied link automatically realized ! tooth of lower jaw
is_a: UBERON:0003655 ! implied link automatically realized ! molar tooth
intersection_of: UBERON:0003655 ! molar tooth
intersection_of: part_of UBERON:0001710 ! lower jaw
[Term]
id: UBERON:0003668
name: synovial bursa
def: "a small fluid-filled sac lined by synovial membrane with an inner capillary layer of slimy fluid. It provides a cushion between bones and tendons and/or muscles around a joint. This helps to reduce friction between the bones and allows free movement. Bursae are filled with synovial fluid and are found around most major joints of the body." [Wikipedia:Synovial_bursa]
comment: See GO:0048540
synonym: "bursa" EXACT [FMA:9692]
xref: FMA:9692
xref: GAID:252
xref: ncithesaurus:Synovial_Bursa
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0003669
name: fascia lata
xref: FMA:13902
xref: GAID:117
xref: ncithesaurus:Fascia_Lata
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0003670
name: smegma
xref: FMA:19656
xref: GAID:1170
xref: ncithesaurus:Smegma
is_a: UBERON:0000456 ! secretion
[Term]
id: UBERON:0003671
name: anterior cruciate ligament
xref: FMA:44614
xref: GAID:122
xref: ncithesaurus:Anterior_Cruciate_Ligament
is_a: UBERON:0000211 ! ligament
relationship: constitutional_part_of UBERON:0001485 ! knee joint
[Term]
id: UBERON:0003672
name: dentition
synonym: "dental plate" RELATED []
synonym: "dentition" BROAD []
synonym: "pharyngeal teeth" RELATED []
synonym: "set of teeth" EXACT [FMA:75150]
synonym: "teeth" EXACT [FMA:75150]
synonym: "teeth" RELATED []
synonym: "teeth set" EXACT [FMA:75150]
xref: FMA:75150
xref: GAID:1249
xref: ncithesaurus:Dentition
xref: TAO:0000644
xref: ZFA:0000644
is_a: UBERON:0000061 ! anatomical structure
relationship: has_part UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003673
name: ligamentum flavum
synonym: "flaval ligament" RELATED [GAID:126]
xref: FMA:13423
xref: GAID:126
xref: ncithesaurus:Ligamentum_Flavum
is_a: UBERON:0000211 ! ligament
[Term]
id: UBERON:0003674
name: cuspid
synonym: "canine teeth" RELATED [GAID:1262]
synonym: "canine tooth" RELATED [GAID:1262]
synonym: "cuspid" EXACT [FMA:55636]
xref: FMA:55636
xref: GAID:1262
is_a: UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003675
name: tooth crown
synonym: "anatomical crown" EXACT [FMA:55623]
synonym: "tooth crown" EXACT [FMA:55623]
xref: FMA:55623
xref: GAID:1275
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003676
name: patellar ligament
synonym: "central band of tendon of quadriceps femoris" EXACT [FMA:44581]
synonym: "ligamentum patella" EXACT [FMA:44581]
xref: FMA:44581
xref: GAID:128
xref: ncithesaurus:Patellar_Ligament
is_a: UBERON:0000211 ! ligament
relationship: constitutional_part_of UBERON:0001485 ! knee joint
[Term]
id: UBERON:0003677
name: tooth root
synonym: "radix corona" EXACT [FMA:55624]
synonym: "tooth root" EXACT [FMA:55624]
xref: FMA:55624
xref: GAID:1280
is_a: UBERON:0000063 ! organ segment
relationship: attached_to UBERON:0001091 ! calcareous tooth
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003678
name: tooth apex
synonym: "apical foramen" RELATED [GAID:1281]
synonym: "tooth apex" EXACT [FMA:63000]
synonym: "tooth apice" RELATED [GAID:1281]
xref: FMA:63000
xref: GAID:1281
is_a: UBERON:0000015 ! anatomical boundary
relationship: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003679
name: mouth floor
synonym: "floor of mouth" EXACT [FMA:86592]
synonym: "sublingual region" RELATED [GAID:1283]
xref: FMA:86592
xref: GAID:1283
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0003680
name: posterior cruciate ligament
xref: FMA:44617
xref: GAID:129
xref: ncithesaurus:Posterior_Cruciate_Ligament
is_a: UBERON:0000211 ! ligament
relationship: constitutional_part_of UBERON:0001485 ! knee joint
[Term]
id: UBERON:0003681
name: masticatory muscle
synonym: "masticatory muscles" EXACT [FMA:71437]
synonym: "masticatory muscles set" EXACT [FMA:71437]
xref: EFO:0001424
xref: FMA:71437
xref: GAID:145
is_a: UBERON:0001630 ! muscle organ
[Term]
id: UBERON:0003682
name: palatal muscle
synonym: "palatal muscle" EXACT [FMA:46726]
synonym: "palate muscle" EXACT [FMA:46726]
synonym: "palatine muscle" EXACT [FMA:46726]
xref: FMA:46726
xref: GAID:151
xref: ncithesaurus:Palatal_Muscle
is_a: UBERON:0002376 ! muscle of head
[Term]
id: UBERON:0003683
name: rotator cuff
synonym: "musculotendinous cuff" EXACT [FMA:37018]
synonym: "rotator cuff" EXACT [FMA:37018]
xref: FMA:37018
xref: GAID:160
xref: ncithesaurus:Rotator_Cuff
is_a: UBERON:0000477 ! anatomical cluster
relationship: constitutional_part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003684
name: abdominal cavity
synonym: "cavitas abdominis" RELATED [GAID:17]
synonym: "cavity of abdominal compartment" EXACT [FMA:12266]
synonym: "cavity of compartment of abdomen" EXACT [FMA:12266]
synonym: "space of abdominal compartment" EXACT [FMA:12266]
xref: EFO:0000213
xref: FMA:12266
xref: GAID:17
xref: ncithesaurus:Abdominal_Cavity
is_a: UBERON:0002323 ! body cavity
relationship: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003685
name: cranial suture
synonym: "cranial sutures" EXACT [FMA:71385]
synonym: "cranial sutures set" EXACT [FMA:71385]
xref: FMA:71385
xref: GAID:211
xref: MA:0001475
is_a: UBERON:0000969 ! suture
intersection_of: UBERON:0000969 ! suture
intersection_of: part_of UBERON:0003128 ! cranium
[Term]
id: UBERON:0003686
name: tooth socket
synonym: "alveolus dentali" RELATED [GAID:217]
synonym: "alveolus dentalis" RELATED [GAID:217]
synonym: "dental alveolus" RELATED [GAID:217]
synonym: "dental alveolus" EXACT [FMA:57490]
xref: FMA:57490
xref: GAID:217
is_a: UBERON:0002553 ! anatomical cavity
[Term]
id: UBERON:0003687
name: foramen magnum
xref: FMA:75306
xref: GAID:228
xref: ncithesaurus:Foramen_Magnum
is_a: UBERON:0001676 ! occipital bone
[Term]
id: UBERON:0003688
name: omentum
xref: FMA:14650
xref: GAID:23
xref: ncithesaurus:Omentum
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0001178 ! visceral peritoneum
[Term]
id: UBERON:0003689
name: sella turcica
xref: FMA:54709
xref: GAID:231
xref: ncithesaurus:Sella_Turcica
is_a: UBERON:0001677 ! sphenoid bone
[Term]
id: UBERON:0003690
name: sacrum
synonym: "sacral bone" EXACT [FMA:16202]
synonym: "sacrum [sacral vertebrae I-V]" EXACT [FMA:16202]
xref: FMA:16202
xref: GAID:241
xref: ncithesaurus:Sacral_Bone
is_a: UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0001130 ! vertebral column
relationship: part_of UBERON:0002090 ! axial skeleton
[Term]
id: UBERON:0003691
name: epidural space
synonym: "extradural space" EXACT [FMA:71228]
xref: FMA:71228
xref: GAID:243
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0003692
name: acromioclavicular joint
xref: FMA:25898
xref: GAID:249
xref: ncithesaurus:Acromioclavicular_Joint
is_a: UBERON:0000982 ! joint
is_a: UBERON:0003657 ! implied link automatically realized ! limb joint
relationship: constitutional_part_of UBERON:0001467 ! shoulder
[Term]
id: UBERON:0003693
name: retroperitoneal space
synonym: "retroperitoneum" EXACT [FMA:15080]
xref: FMA:15080
xref: GAID:25
xref: ncithesaurus:Retroperitoneum
is_a: UBERON:0000464 ! anatomical space
[Term]
id: UBERON:0003694
name: atlanto-axial joint
synonym: "atlanto axial joint" RELATED [GAID:250]
synonym: "atlantoaxial joint" RELATED [GAID:250]
xref: FMA:25524
xref: GAID:250
xref: ncithesaurus:Atlanto-axial_Joint
is_a: UBERON:0000982 ! joint
is_a: UBERON:0003657 ! implied link automatically realized ! limb joint
[Term]
id: UBERON:0003695
name: metacarpophalangeal joint
synonym: "metacarpal joint" EXACT [FMA:35246]
synonym: "mp joint" EXACT [FMA:35246]
xref: FMA:35246
xref: GAID:255
xref: ncithesaurus:Metacarpophalangeal_Joint
is_a: UBERON:0002217 ! synovial joint
relationship: attached_to UBERON:0002374 ! metacarpal bone
[Term]
id: UBERON:0003696
name: metatarsophalangeal joint
synonym: "metatarsal joint" EXACT [FMA:35222]
xref: FMA:35222
xref: GAID:258
xref: ncithesaurus:Metatarsophalangeal_Joint
is_a: UBERON:0001487 ! joint of foot
relationship: attached_to UBERON:0001448 ! metatarsal bone
[Term]
id: UBERON:0003697
name: abdominal wall
synonym: "abdominal wall" EXACT [FMA:10429]
xref: FMA:10429
xref: GAID:26
is_a: UBERON:0000060 ! anatomical wall
intersection_of: UBERON:0000060 ! anatomical wall
intersection_of: part_of UBERON:0000916 ! abdomen
[Term]
id: UBERON:0003698
name: subtalar joint
synonym: "subtalar joint" EXACT [FMA:35198]
synonym: "talocalcaneal joint" RELATED [GAID:260]
xref: FMA:35198
xref: GAID:260
xref: ncithesaurus:Subtalar_Joint
is_a: UBERON:0001487 ! joint of foot
is_a: UBERON:0002217 ! synovial joint
[Term]
id: UBERON:0003699
name: pubic symphysis
synonym: "pubic symphyse" RELATED [GAID:267]
synonym: "symphysis pubis" EXACT [FMA:16950]
xref: FMA:16950
xref: GAID:267
is_a: UBERON:0000982 ! joint
is_a: UBERON:0002216 ! symphysis
[Term]
id: UBERON:0003700
name: temporomandibular joint
xref: BTO:0003674
xref: FMA:54832
xref: GAID:272
xref: MA:0002899
is_a: UBERON:0000982 ! joint
is_a: UBERON:0003657 ! implied link automatically realized ! limb joint
relationship: constitutional_part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0003701
name: achilles tendon
synonym: "achilles tendon" EXACT [FMA:51061]
xref: FMA:51061
xref: GAID:277
xref: ncithesaurus:Achilles_Tendon
is_a: UBERON:0000043 ! tendon
relationship: part_of UBERON:0001665 ! triceps surae
[Term]
id: UBERON:0003702
name: inguinal canal
xref: FMA:19928
xref: GAID:28
is_a: UBERON:0001062 ! anatomical entity
[Term]
id: UBERON:0003703
name: extrahepatic bile duct
synonym: "extrahepatic biliary system" RELATED [GAID:281]
xref: FMA:14678
xref: GAID:281
xref: ncithesaurus:Extrahepatic_Bile_Duct
is_a: UBERON:0002394 ! bile duct
[Term]
id: UBERON:0003704
name: intrahepatic bile duct
xref: FMA:15766
xref: GAID:287
xref: ncithesaurus:Intrahepatic_Bile_Duct
xref: ZFA:0005169
is_a: UBERON:0002394 ! bile duct
[Term]
id: UBERON:0003705
name: meckel's diverticulum
synonym: "diverticulum of meckel" EXACT [FMA:14967]
synonym: "meckel diverticulum" RELATED [GAID:317]
synonym: "meckel's diverticulum" EXACT [FMA:14967]
synonym: "meckels diverticulum" RELATED [GAID:317]
xref: FMA:14967
xref: GAID:317
is_a: UBERON:0000063 ! organ segment
relationship: part_of UBERON:0002116 ! ileum
[Term]
id: UBERON:0003706
name: vocal cord
synonym: "true vocal cord" EXACT [FMA:55457]
synonym: "vocal cord" EXACT [FMA:55457]
synonym: "vocal fold" RELATED [GAID:344]
xref: FMA:55457
xref: GAID:344
xref: ncithesaurus:Vocal_Cord
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001737 ! larynx
[Term]
id: UBERON:0003707
name: sinus of valsalva
synonym: "aortic sinus" RELATED [GAID:472]
synonym: "sinus of valsalva" EXACT [FMA:3745]
synonym: "valsalva sinus" RELATED [GAID:472]
xref: FMA:3745
xref: GAID:472
is_a: UBERON:0000947 ! aorta
is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel
relationship: part_of UBERON:0000947 ! aorta
[Term]
id: UBERON:0003708
name: carotid sinus
xref: FMA:50094
xref: GAID:482
is_a: UBERON:0001530 ! common carotid artery
[Term]
id: UBERON:0003709
name: circle of willis
synonym: "cerebral arterial circle" RELATED [GAID:486]
synonym: "circle of willis" EXACT [FMA:50454]
synonym: "willis circle" RELATED [GAID:486]
xref: FMA:50454
xref: GAID:486
is_a: UBERON:0001637 ! artery
[Term]
id: UBERON:0003710
name: vasa vasorum
xref: FMA:77433
xref: GAID:526
xref: ncithesaurus:Vasa_Vasorum
is_a: UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0003711
name: brachiocephalic vein
synonym: "brachiocephalic venous tree" EXACT [FMA:4723]
synonym: "innominate vein" RELATED [GAID:529]
synonym: "innominate vein" EXACT [FMA:4723]
xref: FMA:4723
xref: GAID:529
xref: ncithesaurus:Innominate_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0003712
name: cavernous sinus
xref: FMA:50772
xref: GAID:532
xref: ncithesaurus:Cavernous_Sinus
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0003713
name: splenic vein
xref: FMA:14331
xref: GAID:541
xref: ncithesaurus:Splenic_Vein
is_a: UBERON:0001638 ! vein
[Term]
id: UBERON:0003714
name: nerve tissue
synonym: "nerve tissue" EXACT [FMA:9642]
synonym: "nervous tissue" EXACT [FMA:9642]
synonym: "neural tissue" EXACT [FMA:9642]
xref: FMA:9642
xref: GAID:609
xref: ncithesaurus:Nervous_Tissue
is_a: UBERON:0000479 ! portion of tissue
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0003715
name: splanchnic nerve
xref: FMA:5883
xref: GAID:800
is_a: UBERON:0001021 ! nerve
relationship: part_of UBERON:0000013 ! sympathetic nervous system
[Term]
id: UBERON:0003716
name: recurrent laryngeal nerve
synonym: "inferior laryngeal nerve" RELATED [GAID:804]
xref: FMA:6246
xref: GAID:804
is_a: UBERON:0002003 ! peripheral nerve
relationship: branch_of UBERON:0001759 ! vagus nerve
[Term]
id: UBERON:0003717
name: golgi-mazzoni corpuscle
synonym: "golgi mazzoni corpuscle" RELATED [GAID:817]
synonym: "golgi-mazzoni corpuscle" EXACT [FMA:83609]
xref: FMA:83609
xref: GAID:817
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0003718
name: muscle spindle
synonym: "muscle stretch receptor" RELATED [GAID:819]
synonym: "neuromuscular spindle" RELATED [GAID:819]
synonym: "neuromuscular spindle" EXACT [FMA:83607]
xref: FMA:83607
xref: GAID:819
xref: ncithesaurus:Muscle_Spindle
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0001016 ! nervous system
[Term]
id: UBERON:0003719
name: pacinian corpuscle
xref: FMA:83604
xref: GAID:820
is_a: UBERON:0000477 ! anatomical cluster
relationship: part_of UBERON:0000010 ! peripheral nervous system
[Term]
id: UBERON:0003720
name: anterior cranial fossa
xref: FMA:9682
xref: GAID:83
xref: ncithesaurus:Anterior_Fossa
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003721
name: lingual nerve
xref: FMA:53218
xref: GAID:835
is_a: UBERON:0001021 ! nerve
relationship: branch_of UBERON:0000375 ! mandibular nerve
[Term]
id: UBERON:0003722
name: middle cranial fossa
xref: FMA:54369
xref: GAID:84
xref: ncithesaurus:Middle_Fossa
is_a: UBERON:0002553 ! anatomical cavity
relationship: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003723
name: vestibular nerve
synonym: "scarpa ganglion" RELATED [GAID:840]
synonym: "scarpa's ganglion" RELATED [GAID:840]
synonym: "scarpas ganglion" RELATED [GAID:840]
synonym: "vestibular root of acoustic nerve" EXACT [FMA:53401]
synonym: "vestibular root of eighth cranial nerve" EXACT [FMA:53401]
xref: FMA:53401
xref: GAID:840
xref: ncithesaurus:Vestibular_Nerve
is_a: UBERON:0001785 ! cranial nerve
relationship: branch_of UBERON:0001648 ! vestibulocochlear nerve
[Term]
id: UBERON:0003724
name: musculocutaneous nerve
synonym: "casserio's nerve" EXACT [FMA:37064]
xref: FMA:37064
xref: GAID:844
is_a: UBERON:0002003 ! peripheral nerve
[Term]
id: UBERON:0003725
name: cervical plexus
synonym: "cervical plexus" EXACT [FMA:5904]
xref: FMA:5904
xref: GAID:847
is_a: UBERON:0001813 ! somatic nerve plexus
[Term]
id: UBERON:0003726
name: thoracic nerve
synonym: "pectoral nerve" RELATED [GAID:857]
synonym: "thoracic spinal nerve" EXACT [FMA:5860]
xref: FMA:5860
xref: GAID:857
is_a: UBERON:0001780 ! spinal nerve
[Term]
id: UBERON:0003727
name: intercostal nerve
synonym: "anterior ramus of thoracic nerve" EXACT [FMA:6028]
synonym: "anterior ramus of thoracic spinal nerve" EXACT [FMA:6028]
synonym: "ramus anterior, nervus thoracicus" EXACT [FMA:6028]
synonym: "thoracic anterior ramus" EXACT [FMA:6028]
synonym: "ventral ramus of thoracic spinal nerve" EXACT [FMA:6028]
xref: FMA:6028
xref: GAID:858
xref: ncithesaurus:Intercostal_Nerve
is_a: UBERON:0001780 ! spinal nerve
[Term]
id: UBERON:0003728
name: mediastinum
synonym: "mediastinal part of chest" EXACT [FMA:9826]
xref: FMA:9826
xref: GAID:94
xref: ncithesaurus:Mediastinum
is_a: UBERON:0002224 ! thoracic cavity
[Term]
id: UBERON:0003729
name: mouth mucosa
synonym: "buccal mucosa" RELATED [GAID:951]
synonym: "mouth mucosa" EXACT [FMA:59660]
synonym: "mucous membrane of mouth" EXACT [FMA:59660]
synonym: "oral mucosa" RELATED [GAID:951]
synonym: "oral part of viscerocranial mucosa" EXACT [FMA:59660]
xref: FMA:59660
xref: GAID:951
is_a: UBERON:0000344 ! mucosa
intersection_of: UBERON:0000344 ! mucosa
intersection_of: part_of UBERON:0000165 ! mouth
[Term]
id: UBERON:0003820
name: prostate bud
def: "A region of the fetal urogenital sinus epithelium destined to become the prostate[GO]." [GO:0060513]
synonym: "prostatic bud" EXACT []
is_a: UBERON:0002050 ! embryonic structure
[Term]
id: UBERON:0003821
name: metacarpal/metatarsal bone
synonym: "metacarpal or metatarsal bone" EXACT []
synonym: "metacarpal/metatarsal" EXACT []
xref: MA:0000301
union_of: UBERON:0001448 ! metatarsal bone
union_of: UBERON:0002374 ! metacarpal bone
[Term]
id: UBERON:0003822
name: upper arm
synonym: "forearm" EXACT []
synonym: "Proximal segment of free upper limb" EXACT []
synonym: "stylopod of arm" EXACT []
xref: BTO:0001447
xref: MA:0000035
xref: ncithesaurus:Forearm
is_a: UBERON:0002472 ! stylopod
intersection_of: UBERON:0002472 ! stylopod
intersection_of: part_of UBERON:0001460 ! arm
relationship: part_of UBERON:0001460 ! arm
[Term]
id: UBERON:0003823
name: lower leg
synonym: "calf" NARROW []
synonym: "intermediate segment of free lower limb" EXACT []
synonym: "zeugopod of leg" EXACT []
xref: MA:0000051
is_a: UBERON:0002471 ! zeugopod
intersection_of: UBERON:0002471 ! zeugopod
intersection_of: part_of UBERON:0002103 ! hindlimb
relationship: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003824
name: thoracic segment nerve
xref: MA:0000562
is_a: UBERON:0001021 ! implied link automatically realized ! nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0003825
name: abdominal segment nerve
xref: MA:0000528
is_a: UBERON:0003439 ! implied link automatically realized ! trunk nerve
intersection_of: UBERON:0001021 ! nerve
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003826
name: upper leg bone
xref: MA:0000682
is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000376 ! upper leg
[Term]
id: UBERON:0003827
name: thoracic segment bone
xref: MA:0000559
is_a: UBERON:0001474 ! implied link automatically realized ! bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0003828
name: abdominal segment bone
xref: MA:0000525
is_a: UBERON:0003463 ! implied link automatically realized ! trunk bone
intersection_of: UBERON:0001474 ! bone
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003829
name: urethra muscle
xref: MA:0002649
is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000057 ! urethra
[Term]
id: UBERON:0003830
name: thoracic segment muscle
xref: MA:0000561
is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0003831
name: respiratory system muscle
xref: MA:0001828
is_a: UBERON:0000171 ! implied link automatically realized ! respiration organ
is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001004 ! respiratory system
[Term]
id: UBERON:0003832
name: esophagus muscle
xref: MA:0002682
is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure
is_a: UBERON:0002378 ! implied link automatically realized ! muscle of abdomen
is_a: UBERON:0003830 ! implied link automatically realized ! thoracic segment muscle
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0001043 ! esophagus
[Term]
id: UBERON:0003833
name: abdominal segment muscle
xref: MA:0000527
is_a: UBERON:0001774 ! implied link automatically realized ! muscle of trunk
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003834
name: thoracic segment blood vessel
xref: MA:0000558
is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0003835
name: abdominal segment blood vessel
xref: MA:0000524
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
intersection_of: UBERON:0001981 ! blood vessel
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003836
name: abdominal segment skin
xref: MA:0000530
is_a: UBERON:0002097 ! implied link automatically realized ! skin
intersection_of: UBERON:0002097 ! skin
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003837
name: thoracic segment connective tissue
xref: MA:0000560
is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0000915 ! thorax
[Term]
id: UBERON:0003838
name: abdominal segment connective tissue
xref: MA:0000526
is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue
intersection_of: UBERON:0002384 ! connective tissue
intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk
[Term]
id: UBERON:0003839
name: forelimb joint
xref: MA:0000614
is_a: UBERON:0003657 ! implied link automatically realized ! limb joint
intersection_of: UBERON:0003657 ! limb joint
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003840
name: hindlimb joint
xref: MA:0000662
is_a: UBERON:0003657 ! implied link automatically realized ! limb joint
intersection_of: UBERON:0003657 ! limb joint
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003841
name: autopod joint
xref: MA:0002715
is_a: UBERON:0003657 ! implied link automatically realized ! limb joint
intersection_of: UBERON:0003657 ! limb joint
intersection_of: part_of UBERON:0002470 ! autopod
[Term]
id: UBERON:0003842
name: neural lumen
xref: HOG:0001119
is_a: UBERON:0000464 ! implied link automatically realized ! anatomical space
[Term]
id: UBERON:0003843
name: tooth epithelium
xref: HOG:0001443
xref: ZFA:0005135
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003844
name: upper eyelid epithelium
xref: HOG:0000638
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001712 ! upper eyelid
[Term]
id: UBERON:0003845
name: lower eyelid epithelium
xref: HOG:0000637
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001713 ! lower eyelid
[Term]
id: UBERON:0003846
name: thymus epithelium
xref: HOG:0001426
xref: MA:0000768
is_a: UBERON:0000483 ! implied link automatically realized ! epithelium
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0002370 ! thymus
[Term]
id: UBERON:0003847
name: thyroid artery
xref: HOG:0001366
xref: MA:0002066
xref: ncithesaurus:Thyroid_Artery
is_a: UBERON:0001637 ! implied link automatically realized ! artery
intersection_of: UBERON:0001637 ! artery
intersection_of: part_of UBERON:0002046 ! thyroid follicle
[Term]
id: UBERON:0003848
name: gonadal vein
xref: HOG:0001340
is_a: UBERON:0001638 ! implied link automatically realized ! vein
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
intersection_of: UBERON:0001638 ! vein
intersection_of: part_of UBERON:0000991 ! gonad
[Term]
id: UBERON:0003849
name: neural crest midbrain
xref: HOG:0000796
xref: ZFA:0000935
is_a: UBERON:0001891 ! implied link automatically realized ! midbrain
intersection_of: UBERON:0001891 ! midbrain
intersection_of: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0003850
name: neural crest telencephalon
xref: HOG:0000799
xref: ZFA:0000812
is_a: UBERON:0001893 ! implied link automatically realized ! telencephalon
intersection_of: UBERON:0001893 ! telencephalon
intersection_of: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0003851
name: neural crest diencephalon
xref: HOG:0000798
xref: ZFA:0000811
is_a: UBERON:0001894 ! implied link automatically realized ! diencephalon
intersection_of: UBERON:0001894 ! diencephalon
intersection_of: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0003852
name: neural crest hindbrain
xref: HOG:0001210
xref: YMB:0007000
xref: ZFA:0007063
is_a: UBERON:0002028 ! implied link automatically realized ! hindbrain
intersection_of: UBERON:0002028 ! hindbrain
intersection_of: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0003853
name: neural crest spinal cord
xref: HOG:0001006
is_a: UBERON:0002240 ! implied link automatically realized ! spinal cord
intersection_of: UBERON:0002240 ! spinal cord
intersection_of: part_of UBERON:0002342 ! neural crest
[Term]
id: UBERON:0003854
name: spinal cord neural plate
xref: HOG:0000439
xref: ZFA:0007021
is_a: UBERON:0003075 ! implied link automatically realized ! neural plate
intersection_of: UBERON:0003075 ! neural plate
intersection_of: part_of UBERON:0002240 ! spinal cord
[Term]
id: UBERON:0003855
name: gonad mesenchyme
xref: HOG:0001090
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000991 ! gonad
[Term]
id: UBERON:0003856
name: tooth mesenchyme
xref: HOG:0001444
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001091 ! calcareous tooth
[Term]
id: UBERON:0003857
name: upper eyelid mesenchyme
xref: HOG:0001093
is_a: UBERON:0003314 ! implied link automatically realized ! mesenchyme of eye
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001712 ! upper eyelid
[Term]
id: UBERON:0003858
name: lower eyelid mesenchyme
xref: HOG:0001036
is_a: UBERON:0003314 ! implied link automatically realized ! mesenchyme of eye
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0001713 ! lower eyelid
[Term]
id: UBERON:0003859
name: forelimb mesenchyme
xref: HOG:0001109
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002102 ! forelimb
[Term]
id: UBERON:0003860
name: hindlimb mesenchyme
xref: HOG:0001074
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002103 ! hindlimb
[Term]
id: UBERON:0003861
name: neural arch
def: "posterior part of a vertebra that consists of a pair of pedicles and a pair of laminae, and supports seven processes: four articular processes, two transverse processes one spinous process[WP]. ZFA: A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone." [Wikipedia:Vertebral_arch]
synonym: "arch of vertebra" EXACT [FMA:11946]
synonym: "vertebral arch" EXACT []
xref: BTO:0001763
xref: FMA:11946
xref: ZFA:0001066
is_a: UBERON:0002513 ! endochondral bone
is_a: UBERON:0003463 ! implied link automatically realized ! trunk bone
is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue
relationship: part_of UBERON:0001130 ! vertebral column
[Term]
id: UBERON:0003862
name: foot digit 4 phalanx
xref: MA:0001384
xref: ncithesaurus:Foot_Digit_4_Phalanx
is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003634 ! foot digit 4
[Term]
id: UBERON:0003863
name: foot digit 5 phalanx
xref: MA:0001385
xref: ncithesaurus:Foot_Digit_5_Phalanx
is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe
intersection_of: UBERON:0003221 ! phalanx
intersection_of: part_of UBERON:0003635 ! foot digit 5
[Term]
id: UBERON:0003864
name: middle phalanx of finger
synonym: "middle phalanx of hand" EXACT []
xref: FMA:75817
xref: MA:0001394
xref: ncithesaurus:Middle_Phalanx_of_the_Hand
is_a: UBERON:0001436 ! phalanx of finger
[Term]
id: UBERON:0003865
name: distal phalanx of finger
synonym: "distal phalanx of hand" EXACT []
xref: FMA:75818
xref: MA:0001388
xref: ncithesaurus:Distal_Phalanx_of_Hand
is_a: UBERON:0001436 ! phalanx of finger
[Term]
id: UBERON:0003866
name: middle phalanx of toe
synonym: "middle phalanx of foot" EXACT []
xref: FMA:75829
xref: MA:0001386
is_a: UBERON:0001449 ! phalanx of toe
[Term]
id: UBERON:0003867
name: distal phalanx of toe
synonym: "distal phalanx of foot" EXACT []
xref: FMA:75830
xref: MA:0001380
xref: ncithesaurus:Distal_Phalanx_of_Foot
is_a: UBERON:0001449 ! phalanx of toe
[Term]
id: UBERON:0003868
name: proximal phalanx of toe
synonym: "proximal phalanx of foot" EXACT []
synonym: "Proximal phalanx of toe" EXACT []
xref: FMA:75828
xref: MA:0001387
xref: ncithesaurus:Proximal_Phalanx_of_Foot
is_a: UBERON:0001449 ! phalanx of toe
[Term]
id: UBERON:0003869
name: presumptive ganglion
is_a: UBERON:0000479 ! implied link automatically realized ! portion of tissue
intersection_of: UBERON:0000479 ! portion of tissue
intersection_of: develops_into UBERON:0000045 ! ganglion
[Term]
id: UBERON:0003874
name: presumptive ventricle
is_a: UBERON:0000479 ! implied link automatically realized ! portion of tissue
intersection_of: UBERON:0000479 ! portion of tissue
intersection_of: develops_into UBERON:0002300 ! ventricle
[Term]
id: UBERON:0003876
name: hippocampal region
synonym: "hippocampus region" EXACT []
synonym: "subdivision of hippocampus" EXACT []
xref: FMA:74041
xref: MA:0002428
is_a: UBERON:0002616 ! regional part of brain
intersection_of: UBERON:0002616 ! regional part of brain
intersection_of: part_of UBERON:0001954 ! hippocampus
relationship: part_of UBERON:0001954 ! hippocampus
[Term]
id: UBERON:0003881
name: CA1 field of hippocampus
synonym: "CA1" EXACT []
synonym: "CA1 field" EXACT []
synonym: "hippocampus CA1" EXACT []
synonym: "region 1 of Ammon's horn" EXACT []
xref: EFO:0002454
xref: FMA:74042
xref: MA:0000950
is_a: UBERON:0003876 ! hippocampal region
[Term]
id: UBERON:0003882
name: CA2 field of hippocampus
synonym: "CA2" EXACT []
synonym: "CA2 field" EXACT []
synonym: "hippocampus CA2" EXACT []
synonym: "region 2 of Ammon's horn" EXACT []
xref: EFO:0002455
xref: FMA:74044
xref: MA:0000951
is_a: UBERON:0003876 ! hippocampal region
[Term]
id: UBERON:0003883
name: CA3 field of hippocampus
synonym: "CA3" EXACT []
synonym: "CA3 field" EXACT []
synonym: "hippocampus CA3" EXACT []
synonym: "region 3 of Ammon's horn" EXACT []
xref: EFO:0002456
xref: FMA:74045
xref: MA:0000952
is_a: UBERON:0003876 ! hippocampal region
[Term]
id: UBERON:0003884
name: CA4 field of hippocampus
synonym: "CA4" EXACT []
synonym: "CA4 field" EXACT []
synonym: "hippocampus CA4" EXACT []
synonym: "region 4 of Ammon's horn" EXACT []
xref: EFO:0002457
xref: FMA:75741
xref: MA:0000953
is_a: UBERON:0003876 ! hippocampal region
[Term]
id: UBERON:0003885
name: mesentery of uterus
synonym: "mesometrium" EXACT [FMA:19816, http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html, MA:0002931]
synonym: "uterus mesentery" EXACT [Obol:obol]
xref: FMA:19816
xref: MA:0002931
is_a: UBERON:0001297 ! implied link automatically realized ! serosa of uterus
is_a: UBERON:0002095 ! implied link automatically realized ! mesentery
intersection_of: UBERON:0002095 ! mesentery
intersection_of: part_of UBERON:0000995 ! uterus
[Term]
id: UBERON:0003886
name: body cavity precursor
is_a: UBERON:0002553 ! implied link automatically realized ! anatomical cavity
intersection_of: UBERON:0002553 ! anatomical cavity
intersection_of: develops_into UBERON:0002323 ! body cavity
relationship: surrounded_by UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003887
name: intraembryonic coelom
def: "In the development of the human embryo the intraembryonic coelom (or somatic coelom) is a portion of the conceptus forming in the mesoderm. During the second week of development, the lateral mesoderm splits into a dorsal somatic mesoderm (somatopleure) and a ventral splanchnic mesoderm (splanchnopleure). The resulting cavity between the somatopleure and splanchnopleure is called the intraembryonic coelom. This space will give rise to the thoracic and abdominal cavities. It briefly has a connection with the extraembryonic coelom[WP]." [Wikipedia:Intraembryonic_coelom]
synonym: "somatic coelom" EXACT []
is_a: UBERON:0003886 ! body cavity precursor
[Term]
id: UBERON:0003888
name: extraembryonic coelom
def: "cavity between Heuser's membrane and the Trophoblast[WP]." [Wikipedia:Extraembryonic_coelom]
synonym: "chorionic cavity" EXACT []
is_a: UBERON:0003886 ! body cavity precursor
[Term]
id: UBERON:0003889
name: fallopian tube
def: "Two very fine tubes lined with ciliated epithelia, leading from the ovaries of female mammals into the uterus, via the utero-tubal junction[WP]. Embryos have two pairs of ducts to let gametes out of the body; one pair (the Mullerian ducts) develops in females into the Fallopian tubes, uterus and vagina, while the other pair (the Wolffian ducts) develops in males into the epididymis and vas deferens." [Wikipedia:Fallopian_tube]
comment: http://en.wikipedia.org/wiki/Talk:Fallopian_tube#Homology
subset: uberon_slim
synonym: "fallopian tubes" RELATED []
synonym: "mammalian oviduct" RELATED []
xref: EFO:0000974
xref: FMA:18245
xref: GAID:365
xref: galen:FallopianTube
xref: MA:0000385
xref: OpenCyc:Mx4rvViVeZwpEbGdrcN5Y29ycA
is_a: UBERON:0000993 ! oviduct
relationship: connects UBERON:0000995 ! uterus
relationship: connects UBERON:0001179 ! peritoneal cavity
relationship: develops_from UBERON:0003890 ! Mullerian duct
relationship: part_of UBERON:0002355 ! pelvis
[Term]
id: UBERON:0003890
name: Mullerian duct
def: "paired ducts of the embryo that run down the lateral sides of the urogenital ridge and terminate at the mullerian eminence in the primitive urogenital sinus. In the female, they will develop to form the fallopian tubes, uterus, and the upper portion of the vagina; in the male, they are lost. These ducts are made of tissue of mesodermal origin[WP]." [Wikipedia:Mullerian_duct]
synonym: "Müllerian_duct" EXACT []
xref: GAID:1309
xref: XAO:0000330
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0000926 ! mesoderm
[Term]
id: UBERON:0003891
name: stroma
def: "connective, non-functional supportive framework of a biological cell, tissue, or organ. Contrast with parenchyma." [Wikipedia:Stroma]
xref: FMA:81494
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0003893
name: capsule
def: "a cover or envelope partly or wholly surrounding a structure. Examples: egg shell, articular capsules, renal capsules[WP]." [Wikipedia:Capsule_(anatomy)]
comment: see also: protective structure surrounding some species of bacteria and fungi.
xref: FMA:85272
xref: GO:0042603
is_a: UBERON:0000158 ! membranous layer
[Term]
id: UBERON:0003894
name: liver primordium
def: "A primordium that is fated to develop into a liver." [GOC:obol]
synonym: "liver bud" EXACT [XAO:0003266, ZFA:0000124]
xref: XAO:0003266
xref: ZFA:0000124
is_a: UBERON:0001048 ! primordium
intersection_of: UBERON:0001048 ! primordium
intersection_of: develops_into UBERON:0002107 ! liver
relationship: develops_into UBERON:0002107 ! liver
relationship: part_of UBERON:0002423 ! hepatobiliary system
[Term]
id: UBERON:0003895
name: hypaxial myotome region
def: "trunk muscle that lie ventral to the horizontal septum of the vertebrae." [Wikipedia:Epaxial_and_Hypaxial_muscles]
synonym: "body wall muscle" RELATED [XAO:0003228]
synonym: "hypaxial muscle" EXACT [ZFA:0001085]
xref: XAO:0003228
xref: ZFA:0001085
is_a: UBERON:0001134 ! skeletal muscle tissue
is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk
relationship: part_of UBERON:0003082 ! myotome
[Term]
id: UBERON:0003896
name: muscle of body wall
comment: TODO - check trunk vs wall of trunk
is_a: UBERON:0001774 ! implied link automatically realized ! muscle of trunk
intersection_of: UBERON:0001630 ! muscle organ
intersection_of: part_of UBERON:0000309 ! body wall
relationship: develops_from UBERON:0003082 ! myotome
[Term]
id: UBERON:0003897
name: axial muscle
def: "A skeletal muscle of the trunk or head." []
is_a: UBERON:0001134 ! skeletal muscle tissue
union_of: UBERON:0003898 ! skeletal muscle of trunk
union_of: UBERON:0003899 ! skeletal muscle of head
[Term]
id: UBERON:0003898
name: skeletal muscle of trunk
def: "A skeletal muscle of the trunk." []
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0002100 ! trunk
[Term]
id: UBERON:0003899
name: skeletal muscle of head
def: "A skeletal muscle of the head." []
is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue
intersection_of: UBERON:0001134 ! skeletal muscle tissue
intersection_of: part_of UBERON:0000033 ! head
[Term]
id: UBERON:0003900
name: epaxial muscle
def: "trunk muscle that lies dorsal to the septum." [Wikipedia:Epaxial_and_Hypaxial_muscles]
xref: AAO:0000142
xref: TAO:0000349
xref: XAO:0003229
xref: ZFA:0000349
is_a: UBERON:0003898 ! skeletal muscle of trunk
[Term]
id: UBERON:0003901
name: horizontal myoseptum
def: "A connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses." [ZFA:0000671]
xref: ZFA:0000671
is_a: UBERON:0003037 ! septum
relationship: adjacent_to UBERON:0003895 ! hypaxial myotome region
relationship: adjacent_to UBERON:0003900 ! epaxial muscle
[Term]
id: UBERON:0003902
name: retinal neural layer
def: "The layer of nerve cells in the retina[XAO]. The part of the retina that contains neurons and photoreceptor cells[GO]." [GO:0003407, XAO:0003216]
synonym: "neural retina" EXACT [XAO:0003216, ZFA:0000046]
synonym: "neuroretina" EXACT [ZFA:0000046]
xref: XAO:0003216
xref: ZFA:0000046
is_a: UBERON:0001781 ! implied link automatically realized ! layer of retina
[Term]
id: UBERON:0003903
name: bursa of Fabricius
def: "an epithelial and lymphoid organ that develops as a dorsal diverticulum of the proctadael region of the cloaca in birds. The luminal (interior) surface of the bursa is plicated with as many as 15 primary and 7 secondary plicae or folds. These plicae have hundreds of bursal follicles containing follicle-associated epithelial cells, lymphocytes, macrophages, and plasma cells. Lymphoid stem cells migrate from the fetal liver to the bursa during ontogeny. In the bursa, these stem cells acquire the characteristics of mature, immunocompetent B cells[WP]. The bursa is an organ found in birds involved in B cell differentiation[GO]." [GO:004854, Wikipedia:Bursa_of_Fabricius]
is_a: UBERON:0000062 ! organ
relationship: has_part UBERON:0003904 ! bursal plica
[Term]
id: UBERON:0003904
name: bursal plica
def: "Follicle containing part of bursa of Fabricius." [GOC:cjm]
synonym: "bursal fold" EXACT []
is_a: UBERON:0000064 ! organ part
relationship: has_part UBERON:0003905 ! bursal follicle
[Term]
id: UBERON:0003905
name: bursal follicle
def: "Follicle within the plicae of bursa of Fabricius." [GOC:cjm]
is_a: UBERON:0000064 ! organ part
[Term]
id: UBERON:0003906
name: cardiac jelly
def: "Portion of extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates." [ZFA:0001318]
xref: ZFA:0001318
is_a: UBERON:0000479 ! portion of tissue
relationship: adjacent_to UBERON:0002165 ! endocardium
relationship: adjacent_to UBERON:0002349 ! myocardium
[Term]
id: UBERON:0003907
name: left atrioventricular canal
xref: FMA:71123
is_a: UBERON:0002087 ! atrioventricular canal
[Term]
id: UBERON:0003908
name: right atrioventricular canal
xref: FMA:71122
is_a: UBERON:0002087 ! atrioventricular canal
[Term]
id: UBERON:0003909
name: sinusoid
def: "small blood vessel similar to a capillary but with a discontinuous endothelium. Sinusoids are found in the liver, lymphoid tissue, endocrine organs, and hematopoietic organs such as the bone marrow and the spleen. Sinusoids found within terminal villi of the placenta are not comparable to these; they possess a continuous endothelium and complete basal lamina[WP]." [Wikipedia:Sinusoid_(blood_vessel)]
comment: the WP def seems to fit FMA:63198 discontinuous sinusoid (undefined). ZFA has ZFA:0005261 sinusoidal blood vessel endothelium - but not sinusoidal blood vessel
synonym: "sinusoidal blood vessel" EXACT []
xref: FMA:63131
xref: ZFA:0005261
is_a: UBERON:0001981 ! blood vessel
[Term]
id: UBERON:0003910
name: splenic sinusoid
def: "wide vessels in the spleen that drain into trabecular veins[WP]." [Wikipedia:Red_pulp#Sinusoids]
synonym: "sinusoid of red pulp" EXACT []
synonym: "sinusoid of red pulp of spleen" EXACT []
synonym: "sinusoid of spleen" EXACT []
synonym: "spleen sinusoid" EXACT []
synonym: "spleen sinusoidal blood vessel" EXACT []
synonym: "splenic sinus" EXACT []
xref: FMA:63199
is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel
is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel
is_a: UBERON:0003909 ! sinusoid
intersection_of: UBERON:0003909 ! sinusoid
intersection_of: part_of UBERON:0002106 ! spleen
relationship: part_of UBERON:0002106 ! spleen
[Term]
id: UBERON:0003911
name: choroid plexus epithelium
synonym: "epithelium of choroid plexus" EXACT []
xref: MA:0000824
is_a: UBERON:0000483 ! epithelium
is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon
intersection_of: UBERON:0000483 ! epithelium
intersection_of: part_of UBERON:0001886 ! choroid plexus
relationship: part_of UBERON:0001886 ! choroid plexus
[Term]
id: UBERON:0003912
name: chitinous tooth
def: "tooth-like structure composed of chitin." []
is_a: UBERON:0003913 ! radula
[Term]
id: UBERON:0003913
name: radula
def: "an anatomical structure found in mollusks and used for feeding. It is a minutely toothed, chitinous ribbon. It is typically used for scraping or cutting food before the food enters the esophagus. The radula is unique to the molluscs, and is found in all classes of mollusks except for the bivalves." [Wikipedia:Radula]
comment: see dermal denticle\nThe first bona fide radula dates to the Early Cambrian,[3] although trace fossils from the earlier Ediacaran have been suggested to have been made by the radula of the organism Kimberella.[WP]
is_a: UBERON:0000061 ! anatomical structure
[Term]
id: UBERON:0003914
name: epithelial tube
def: "Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GO:0060562, PMID:12526790]
is_a: UBERON:0000025 ! tube
is_a: UBERON:0000483 ! epithelium
[Term]
id: UBERON:0003915
name: endothelial tube
is_a: UBERON:0000025 ! tube
is_a: UBERON:0001986 ! implied link automatically realized ! endothelium
is_a: UBERON:0003914 ! implied link automatically realized ! epithelial tube
[Term]
id: UBERON:0003916
name: fat pad
def: "an accumulation of adipose tissue." [GO:0060613]
synonym: "fat body" RELATED [FMA:58616]
xref: AAO:0000157
xref: BTO:0000442
xref: BTO:0000444
xref: FMA:58616
xref: MA:0002481
xref: XAO:0003050
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001013 ! adipose tissue
[Term]
id: UBERON:0003917
name: arthropod fat body
def: "an insect gland dorsal to the insect gut, with a function analogous to that of the vertebrate liver. It is a storage organ for fats, glycogen and protein and is a major site of intermediary metabolism." [GO:0007503]
xref: FBbt:00005066
xref: GAID:1213
xref: MIAA:0000096
is_a: UBERON:0000062 ! organ
[Term]
id: UBERON:0003918
name: mesenchyme of kidney
synonym: "kidney mesenchyme" EXACT []
is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0002113 ! kidney
[Term]
id: UBERON:0003919
name: mesenchyme of adult kidney
synonym: "kidney stroma" EXACT [GO:0072072]
is_a: UBERON:0003918 ! implied link automatically realized ! mesenchyme of kidney
intersection_of: UBERON:0003104 ! mesenchyme
intersection_of: part_of UBERON:0000082 ! adult mammalian kidney
[Term]
id: UBERON:0003920
name: venous blood vessel
xref: FMA:86188
xref: MA:0000066
is_a: UBERON:0001981 ! blood vessel
[Typedef]
id: adjacent_to
name: adjacent_to
xref: OBO_REL:adjacent_to
[Typedef]
id: anterior_to
name: anterior_to
is_transitive: true
created_by: cjm
creation_date: 2009-07-31T02:15:46Z
[Typedef]
id: attached_to
name: attached_to
xref: :attaches_to
[Typedef]
id: bounds
name: bounds
domain: UBERON:0001062 ! anatomical entity
range: UBERON:0001062 ! anatomical entity
[Typedef]
id: branch_of
name: branch_of
[Typedef]
id: capable_of
name: capable_of
comment: capable_of <-> bearer_of . realized_by
[Typedef]
id: capable_of_regulation_of
name: capable_of_regulation_of
holds_over_chain: capable_of regulates
[Typedef]
id: coincides_with
name: coincides_with
def: "Relation between occurrents, shares start and end boundaries." [Allen:starts, UBERON:cjm]
synonym: "coincides_with" EXACT []
domain: UBERON:0000105 ! life cycle stage
is_a: finishes ! finishes
is_a: starts ! starts
intersection_of: finishes ! finishes
intersection_of: starts ! starts
[Typedef]
id: connects
name: connects
[Typedef]
id: constitutional_part_of
name: constitutional_part_of
[Typedef]
id: continuous_with
name: continuous_with
[Typedef]
id: develops_from
name: develops_from
is_transitive: true
holds_over_chain: part_of develops_from
transitive_over: part_of ! part_of
[Typedef]
id: develops_into
name: develops_into
[Typedef]
id: directly_preceded_by
name: directly_preceded_by
domain: UBERON:0000105 ! life cycle stage
range: UBERON:0000105 ! life cycle stage
holds_over_chain: has_start end_of
is_a: preceded_by ! preceded_by
[Typedef]
id: disconnected_from
name: disconnected_from
def: "A is disconnected_from B if they have no parts in common." [SO:cjm]
synonym: "non_overlapping_with" EXACT []
synonym: "shares_no_parts_with" EXACT []
disjoint_over: part_of ! part_of
is_metadata_tag: true
[Typedef]
id: end_of
name: end_of
domain: UBERON:0000103 ! life cycle stage boundary
range: UBERON:0000105 ! life cycle stage
[Typedef]
id: existence_ends_at
name: existence_ends_at
def: "instance: c existence_ends_at e iff c exists_at e and not ( exists e2 : c exists_at e2 and e before e2). Type: all Cc, exists Ee, c existence_ends_at e." [UBERON:cjm]
domain: UBERON:0001062 ! anatomical entity
range: UBERON:0000103 ! life cycle stage boundary
[Typedef]
id: existence_ends_before
name: existence_ends_before
def: "Relation between continuant c and occurrent s, such that every instance of c ceases to exist before s." [UBERON:cjm]
domain: UBERON:0001062 ! anatomical entity
range: UBERON:0000105 ! life cycle stage
holds_over_chain: existence_ends_during precedes
[Typedef]
id: existence_ends_during
name: existence_ends_during
def: "Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely." [UBERON:cjm]
domain: UBERON:0001062 ! anatomical entity
range: UBERON:0000105 ! life cycle stage
transitive_over: part_of ! part_of
[Typedef]
id: existence_ends_with
name: existence_ends_with
def: "Relation between continuant and occurrent, such that c ceases to exist at the end of p." [UBERON:cjm]
domain: UBERON:0001062 ! anatomical entity
range: UBERON:0000105 ! life cycle stage
[Typedef]
id: existence_starts_after
name: existence_starts_after
def: "Relation between continuant c and occurrent s, such that every instance of c comes into existing after some s has completed." [UBERON:cjm]
domain: UBERON:0001062 ! anatomical entity
range: UBERON:0000105 ! life cycle stage
holds_over_chain: existence_starts_during preceded_by
disjoint_from: existence_starts_during ! existence_starts_during
[Typedef]
id: existence_starts_and_ends_during
name: existence_starts_and_ends_during
domain: UBERON:0001062 ! anatomical entity
range: UBERON:0000105 ! life cycle stage
is_a: existence_ends_during ! existence_ends_during
is_a: existence_starts_during ! existence_starts_during
intersection_of: existence_ends_during ! existence_ends_during
intersection_of: existence_starts_during ! existence_starts_during
[Typedef]
id: existence_starts_at
name: existence_starts_at
def: "instance: c existence_starts_at e iff c exists_at e and not ( exists e2 : c exists_at e2 and e2 before e). Type: all Cc, exists Ee, c existence_starts_at e." [UBERON:cjm]
domain: UBERON:0001062 ! anatomical entity
range: UBERON:0000103 ! life cycle stage boundary
[Typedef]
id: existence_starts_during
name: existence_starts_during
def: "Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s." [UBERON:cjm]
domain: UBERON:0001062 ! anatomical entity
range: UBERON:0000105 ! life cycle stage
transitive_over: part_of ! part_of
[Typedef]
id: existence_starts_or_ends_during
name: existence_starts_or_ends_during
domain: UBERON:0001062 ! anatomical entity
range: UBERON:0000105 ! life cycle stage
union_of: existence_ends_during ! existence_ends_during
union_of: existence_starts_during ! existence_starts_during
[Typedef]
id: existence_starts_with
name: existence_starts_with
def: "Relation between continuant and occurrent, such that c comes into existence at the start of p." [UBERON:cjm]
domain: UBERON:0001062 ! anatomical entity
range: UBERON:0000105 ! life cycle stage
holds_over_chain: existence_starts_at start_of
[Typedef]
id: exists_during
name: exists_during
domain: UBERON:0001062 ! anatomical entity
range: UBERON:0000105 ! life cycle stage
[Typedef]
id: finishes
name: finishes
def: "Relation between occurrents, shares an end boundary with." [Allen:starts, UBERON:cjm]
xref: ncithesaurus:Finish
domain: UBERON:0000105 ! life cycle stage
range: UBERON:0000105 ! life cycle stage
is_a: part_of ! part_of
[Typedef]
id: has_end
name: has_end
domain: UBERON:0000105 ! life cycle stage
range: UBERON:0000103 ! life cycle stage boundary
[Typedef]
id: has_part
name: has_part
is_transitive: true
relationship: inverse_of_on_instance_level part_of ! part_of
[Typedef]
id: has_quality
name: has_quality
[Typedef]
id: has_start
name: has_start
domain: UBERON:0000105 ! life cycle stage
range: UBERON:0000103 ! life cycle stage boundary
[Typedef]
id: inheres_in_progenitor_of
name: inheres_in_progenitor_of
[Typedef]
id: location_of
name: location_of
created_by: cjm
creation_date: 2009-07-30T10:22:21Z
[Typedef]
id: only_in_taxon
name: only_in_taxon
[Typedef]
id: overlaps
name: overlaps
xref: ncithesaurus:Overlap
created_by: cjm
creation_date: 2009-04-12T04:08:35Z
[Typedef]
id: part_of
name: part_of
subset: uberon_slim
xref: OBO_REL:part_of
is_transitive: true
[Typedef]
id: preceded_by
name: preceded_by
xref: OBO_REL:preceded_by
domain: UBERON:0000105 ! life cycle stage
range: UBERON:0000105 ! life cycle stage
is_transitive: true
disjoint_from: part_of ! part_of
[Typedef]
id: precedes
name: precedes
xref: OBO_REL:precedes
domain: UBERON:0000105 ! life cycle stage
range: UBERON:0000105 ! life cycle stage
is_transitive: true
relationship: inverse_of_on_instance_level preceded_by ! preceded_by
[Typedef]
id: regulates
name: regulates
[Typedef]
id: secretes
name: secretes
[Typedef]
id: separated_from_by
name: separated_from_by
formula: "(forall (x y z) (iff (separated_from_by x y z) (and (adjacent_to x z) (adjacent_to y z) (disconnected_from x y))))" CLIF []
[Typedef]
id: site_of
name: site_of
def: "C site_of P iff exists species S such that P occurs_in C for all members of S. Example: bursa of Fabricius site_of B-cell differentiation." [GOC:cjm]
[Typedef]
id: start_of
name: start_of
domain: UBERON:0000103 ! life cycle stage boundary
range: UBERON:0000105 ! life cycle stage
[Typedef]
id: starts
name: starts
def: "Relation between occurrents, shares a start boundary with." [Allen:starts, UBERON:cjm]
domain: UBERON:0000105 ! life cycle stage
range: UBERON:0000105 ! life cycle stage
holds_over_chain: has_start start_of
is_a: part_of ! part_of
[Typedef]
id: surrounded_by
name: surrounded_by
domain: UBERON:0001062 ! anatomical entity
range: UBERON:0001062 ! anatomical entity
[Typedef]
id: surrounds
name: surrounds
xref: ncithesaurus:Surrounding
domain: UBERON:0001062 ! anatomical entity
range: UBERON:0001062 ! anatomical entity
[Typedef]
id: systemic_part_of
name: systemic_part_of
is_a: part_of ! part_of
[Typedef]
id: transports
name: transports