format-version: 1.2 date: 10:02:2010 15:06 subsetdef: uberon_slim "Uberon slim" synonymtypedef: PLURAL "plural term" default-namespace: uberon remark: cvs version $Revision: 1.79 $ treat-xrefs-as-equivalent: CARO [Term] id: UBERON:0000000 name: processual entity def: "An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity." [span:ProcessualEntity] disjoint_from: UBERON:0001062 ! anatomical entity created_by: cjm creation_date: 2009-04-09T05:51:24Z [Term] id: UBERON:0000002 name: cervix def: "Lower, narrow portion of the uterus where it joins with the top end of the vagina." [Wikipedia:Cervix] comment: This class was created automatically from a combination of ontologies. subset: uberon_slim synonym: "Cervical canal" EXACT [] synonym: "cervical canal" EXACT [] synonym: "Cervical canal of uterus" EXACT [] synonym: "cervical canal of uterus" EXACT [] synonym: "cervix" EXACT [] synonym: "Cervix of uterus" EXACT [] synonym: "cervix of uterus" EXACT [] synonym: "Neck of uterus" EXACT [] synonym: "neck of uterus" EXACT [] synonym: "Uterine cervix" EXACT [] synonym: "uterine cervix" EXACT [] xref: BTO:0001421 xref: EFO:0000979 xref: FMA:17740 xref: GAID:376 xref: HOG:0001359 xref: MA:0000392 xref: MAT:0000292 xref: OpenCyc:Mx4rvVipEJwpEbGdrcN5Y29ycA is_a: UBERON:0001560 ! neck of organ relationship: continuous_with UBERON:0000996 ! vagina relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0000003 name: naris def: "One of the two channels of the nose, from the point where they bifurcate to the external opening. In birds and mammals, they contain branched bones or cartilages called turbinates, whose function is to warm air on inhalation and remove moisture on exhalation. Fish do not breathe through their noses, but they do have two small holes used for smelling which may be called nostrils." [Wikipedia:Naris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "olfactory pits" RELATED [] xref: AAO:0000311 xref: EHDAA:9083 xref: FMA:59645 xref: HOG:0000663 xref: MA:0001320 xref: TAO:0001427 xref: XAO:0003033 xref: ZFA:0001427 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002109 ! set of nares [Term] id: UBERON:0000004 name: olfactory apparatus def: "Surface structure that houses the nostrils, or nares, which admit and expel air for respiration in conjunction with the mouth. and behind the nose is the olfactory mucosa and the sinuses. Behind the nasal cavity, air next passes through the pharynx, shared with the digestive system, and then into the rest of the respiratory system. In humans, the nose is located centrally on the face; on most other mammals, it is on the upper tip of the snout. In cetaceans, the nose has been reduced to the nostrils, which have migrated to the top of the head, producing a more streamlined body shape and the ability to breathe while mostly submerged. Conversely, the elephant's nose has elaborated into a long, muscular, manipulative organ called the trunk. GO: The nose is the specialized structure of the face that serves as the organ of the sense of smell and as part of the respiratory system. Includes the nasi externus (external nose) and cavitas nasi (nasal cavity)." [Wikipedia:Nose] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "nose" EXACT [] synonym: "peripheral olfactory organ" EXACT [] synonym: "proboscis" RELATED [] xref: BTO:0000840 xref: EFO:0000828 xref: EHDAA:1502 xref: FMA:46472 xref: GAID:77 xref: MA:0000281 xref: MAT:0000139 xref: MIAA:0000139 xref: ncithesaurus:Nose xref: OpenCyc:Mx4rvViCbJwpEbGdrcN5Y29ycA xref: TAO:0000047 xref: ZFA:0000047 is_a: UBERON:0000005 ! chemosensory sensory organ relationship: develops_from UBERON:0003050 ! olfactory placode [Term] id: UBERON:0000005 name: chemosensory sensory organ def: "." [Wikipedia:Olfactory_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "olfactory system" EXACT [] xref: AAO:0000334 xref: BILA:0000144 xref: EFO:0001973 xref: FBbt:00005157 xref: FMA:7190 xref: MA:0002445 xref: TAO:0001149 xref: XAO:0000201 xref: ZFA:0001149 is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0000006 name: islet of Langerhans def: "." [Wikipedia:Islet_of_Langerhans] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "endocrine pancreas" RELATED [] synonym: "islet of Langerhans" EXACT [] synonym: "islet of langerhans" RELATED [] synonym: "Islets of Langerhans" EXACT [] synonym: "islets of langerhans" EXACT [] synonym: "Pancreatic insula" EXACT [] synonym: "pancreatic insula" EXACT [] synonym: "Pancreatic islet" EXACT [] synonym: "pancreatic islet" EXACT [] xref: BTO:0000991 xref: EFO:0000856 xref: FMA:16016 xref: GAID:324 xref: HOG:0000646 xref: MA:0000127 xref: MAT:0000076 xref: MIAA:0000076 xref: ncithesaurus:Islet_of_Langerhans xref: XAO:0000159 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0000007 name: pituitary gland def: "The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands [GO]. An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin [ZFIN]." [Wikipedia:Pituitary_gland, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "hypophysis" RELATED [] synonym: "Hypophysis cerebri" EXACT [] synonym: "hypophysis cerebri" RELATED [] synonym: "Pituitary" EXACT [] synonym: "pituitary" EXACT [] synonym: "Pituitary gland" EXACT [] xref: EFO:0000857 xref: EHDAA:2183 xref: EHDAA:4477 xref: FMA:13889 xref: GAID:457 xref: MA:0000176 xref: MAT:0000077 xref: MIAA:0000077 xref: ncithesaurus:Pituitary_Gland xref: OpenCyc:Mx4rv6NQYJwpEbGdrcN5Y29ycA xref: TAO:0000118 xref: XAO:0000161 xref: ZFA:0000118 is_a: UBERON:0002530 ! gland is_a: UBERON:0003296 ! implied link automatically realized ! gland of diencephalon relationship: part_of UBERON:0000949 ! endocrine system relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0000009 name: submucosa def: "." [Wikipedia:Submucosa] subset: uberon_slim xref: BTO:0002107 xref: FMA:85391 xref: ncithesaurus:Submucosa is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000010 name: peripheral nervous system def: "Nervous structures including ganglia outside of the central nervous system. Divided into somatic nervous system and autonomic nervous system" [FB:gg, OMD:peripheral+nervous+system, Wikipedia:Peripheral_nervous_system, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "PNS" RELATED [] xref: AAO:0000429 xref: BILA:0000081 xref: BTO:0001028 xref: EFO:0000891 xref: EHDAA:2893 xref: FBbt:00005098 xref: FMA:9903 xref: GAID:715 xref: HOG:0000399 xref: MA:0000218 xref: MAT:0000338 xref: MIAA:0000338 xref: ncithesaurus:Peripheral_Nervous_System xref: NIF_GrossAnatomy:birnlex_1111 xref: TAO:0000142 xref: XAO:0000178 xref: ZFA:0000142 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0000011 name: parasympathetic nervous system def: "The parasympathetic nervous system (PSNS) is a division of the autonomic nervous system (ANS), along with the sympathetic nervous system (SNS) and enteric nervous system (ENS). The ANS is a subdivision of the peripheral nervous system (PNS). ANS sends fibers to three tissues: cardiac muscle, smooth muscle, or glandular tissue. This stimulation, sympathetic or parasympathetic, is to control smooth muscle contraction, regulate cardiac muscle, or stimulate or inhibit glandular secretion [Wikipedia]. The parasympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system. Parasympathetic nerves emerge cranially as pre ganglionic fibers from oculomotor, facial, glossopharyngeal and vagus and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic receptors. The parasympathetic system innervates, for example: salivary glands, thoracic and abdominal viscera, bladder and genitalia [GO]." [Wikipedia:Parasympathetic_nervous_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Parasympathetic nervous system" EXACT [] synonym: "Parasympathetic part of autonomic division of nervous system" EXACT [] synonym: "parasympathetic part of autonomic division of nervous system" EXACT [] synonym: "PNS - parasympathetic" EXACT [] synonym: "pns - parasympathetic" EXACT [] xref: BTO:0001833 xref: EFO:0000894 xref: EHDA:10096 xref: FMA:9907 xref: GAID:708 xref: HOG:0000755 xref: MA:0000223 xref: MAT:0000101 xref: MIAA:0000101 xref: ncithesaurus:Parasympathetic_Nervous_System xref: NIF_GrossAnatomy:birnlex_2517 xref: TAO:0001575 xref: ZFA:0001575 is_a: UBERON:0002410 ! autonomic nervous system relationship: part_of UBERON:0002410 ! autonomic nervous system [Term] id: UBERON:0000012 name: somatic nervous system def: "." [Wikipedia:Somatic_nervous_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "PNS - somatic" EXACT [] synonym: "pns - somatic" EXACT [] xref: EFO:0000892 xref: EFO:0000898 xref: FMA:9904 xref: MA:0002850 xref: MAT:0000099 xref: MAT:0000342 xref: MIAA:0000099 xref: MIAA:0000342 xref: WBbt:0005760 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0000013 name: sympathetic nervous system def: "The Sympathetic Nervous System (SNS) is a branch of the autonomic nervous system along with the enteric nervous system and parasympathetic nervous system. It is always active at a basal level (called sympathetic tone) and becomes more active during times of stress. Its actions during the stress response comprise the fight-or-flight response [Wikipedia]. he sympathetic nervous system is one of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter [GO]." [Wikipedia:Sympathetic_nervous_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sympathetic nervous system" EXACT [] synonym: "sympathetic nervous system" EXACT [] synonym: "Sympathetic part of autonomic division of nervous system" EXACT [] synonym: "sympathetic part of autonomic division of nervous system" EXACT [] xref: BTO:0001832 xref: EFO:0000893 xref: FMA:9906 xref: GAID:710 xref: HOG:0000384 xref: MA:0000225 xref: MIAA:0000100 xref: ncithesaurus:Sympathetic_Nervous_System xref: NIF_GrossAnatomy:birnlex_2516 xref: TAO:0001576 xref: ZFA:0001576 is_a: UBERON:0002410 ! autonomic nervous system relationship: part_of UBERON:0002410 ! autonomic nervous system [Term] id: UBERON:0000014 name: zone of skin xref: FMA:86166 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002097 ! skin [Term] id: UBERON:0000015 name: anatomical boundary def: "Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface." [CARO:MAH] synonym: "anatomical line" EXACT [] xref: BILA:0000008 xref: CARO:0000008 xref: FMA:256502 xref: HAO:0000008 xref: ZFA:0001689 is_a: UBERON:0000466 ! immaterial anatomical entity disjoint_from: UBERON:0000464 ! anatomical space [Term] id: UBERON:0000016 name: endocrine pancreas def: "The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin[GO]. // The zebrafish endocrine pancreas is composed of small groups of islet cells that are distributed throughout the exocrine pancreas[ZFIN]. The islet cells produce insulin, glucagon and somatostatin." [GOC:GO, Wikipedia:Endocrine_pancreas] subset: uberon_slim synonym: "Endocrine pancreas" EXACT [] synonym: "endocrine pancreas" EXACT [] synonym: "Pars endocrina pancreatis" EXACT [] synonym: "pars endocrina pancreatis" EXACT [] xref: BTO:0000650 xref: FMA:16018 xref: HOG:0000049 xref: MA:0001582 xref: ncithesaurus:Endocrine_Pancreas xref: TAO:0001260 xref: ZFA:0001260 is_a: UBERON:0002075 ! viscus relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0000017 name: exocrine pancreas def: "The exocrine pancreas produces and store zymogens of digestive enzymes, such as chymotrypsinogen and trypsinogen in the acinar cells [GO] // The exocrine pancreas is composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion." [GOC:GO, Wikipedia:Exocrine_pancreas] subset: uberon_slim synonym: "Exocrine pancreas" EXACT [] synonym: "exocrine pancreas" EXACT [] synonym: "Pars exocrina pancreatis" EXACT [] synonym: "pars exocrina pancreatis" EXACT [] xref: BTO:0000434 xref: FMA:16017 xref: HOG:0000048 xref: MA:0002415 xref: ncithesaurus:Exocrine_Pancreas xref: TAO:0001249 xref: XAO:0000137 xref: ZFA:0001249 is_a: UBERON:0002075 ! viscus relationship: part_of UBERON:0001264 ! pancreas relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0000018 name: compound eye def: "A light sensing organ composed of ommatidia" [FB:gg, Wikipedia:Compound_eye] subset: uberon_slim synonym: "adult compound eye" RELATED [] synonym: "insect eye" RELATED [] xref: BTO:0001921 xref: FBbt:00004508 xref: HAO:0000217 is_a: UBERON:0000970 ! eye relationship: has_part UBERON:0000971 ! ommatidium [Term] id: UBERON:0000019 name: camera-type eye alt_id: UBERON:FMA_12513-MIAA_0000283-XAO_0000181 def: "GO: The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field. Organ with organ cavity which is connected to the optic nerve, allowing light to enter it and project onto a light-sensitive panel of cells, known as the retina, at the rear of the eye [FMA]." [FMA:12513, GO:0043010, Image:http\://genome.cshlp.org/content/14/8/1555/F1.large.jpg, Image:http\://www.pnas.org/content/94/6/2098/F1.large.jpg] subset: uberon_slim synonym: "Orbital part of face" RELATED [] synonym: "Orbital region" RELATED [] synonym: "vertebrate eye" EXACT [] xref: FMA:12513 xref: MA:0000261 xref: TAO:0000107 xref: XAO:0000179 xref: ZFA:0000107 is_a: UBERON:0000047 ! simple eye relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0000020 name: sense organ def: "An organ that is part of a sense organ system." [Wikipedia:Sense_organ] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "sensillum" NARROW [WBbt:0006929] synonym: "sensor" RELATED [] synonym: "sensory organ" EXACT [] xref: BTO:0000202 xref: EHDAA:500 xref: FBbt:00005155 xref: FMA:75259 xref: GAID:63 xref: HAO:0000930 xref: HOG:0001407 xref: MA:0000017 xref: WBbt:0006929 is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0001032 ! sense organ system relationship: part_of UBERON:0001032 ! sense organ system [Term] id: UBERON:0000021 name: cutaneous appendage def: "Appendage that protrudes from the skin" [] subset: uberon_slim is_a: UBERON:0000026 ! appendage relationship: part_of UBERON:0002097 ! skin [Term] id: UBERON:0000022 name: feather def: "." [Wikipedia:Feather] subset: uberon_slim xref: BTO:0000447 xref: EFO:0000955 xref: GAID:1214 xref: MAT:0000156 xref: OpenCyc:Mx4rvVjW-5wpEbGdrcN5Y29ycA is_a: UBERON:0000021 ! cutaneous appendage [Term] id: UBERON:0000023 name: wing def: "Appendage that is used to produce lift for flight through the air." [Wikipedia:Wing] comment: This class is not monophyletic. See also: GO:0007629 subset: uberon_slim xref: BTO:0001463 xref: EFO:0000885 xref: GAID:1217 xref: MAT:0000202 xref: MIAA:0000202 is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0000024 name: forelimb wing def: "Forelimb that is used to produce lift for flight through the air." [] subset: uberon_slim is_a: UBERON:0000023 ! wing is_a: UBERON:0002102 ! forelimb [Term] id: UBERON:0000025 name: tube def: "Epithelial and endothelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues including lung and trachea, kidney, the mammary gland, the vascular system and the gastrointestinal and urinary-genital tracts. with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system" [GO:0035295, PMID:12526790] xref: ncithesaurus:Tube is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000026 name: appendage def: "Organ or organ part that is attached to the trunk of an organism. For example a limb[GO]." [GO:0048736, Wikipedia:Appendage] subset: uberon_slim xref: BILA:0000018 xref: EFO:0000799 xref: HAO:0000144 xref: MAT:0000023 xref: ncithesaurus:Appendage xref: OpenCyc:Mx4rvViC-JwpEbGdrcN5Y29ycA is_a: UBERON:0000475 ! organism subdivision relationship: attached_to UBERON:0002100 ! trunk [Term] id: UBERON:0000027 name: hind digit comment: This class was created automatically from a combination of ontologies synonym: "hind digit" EXACT [] synonym: "hindlimb digit" RELATED [] xref: AAO:0000888 xref: XAO:0003035 is_a: UBERON:0002544 ! digit [Term] id: UBERON:0000028 name: fore digit def: "A digit of the forelimb." [UBERON:xp] comment: This class was created automatically from a combination of ontologies synonym: "fore digit" EXACT [] synonym: "forelimb digit" RELATED [] xref: AAO:0000857 xref: XAO:0003036 is_a: UBERON:0002544 ! digit intersection_of: UBERON:0002544 ! digit intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0000029 name: lymph node def: "Oval or bean shaped bodies (1 - 30 mm in diameter) located along the lymphatic system. Lymph nodes are garrisons of B, T, and other immune cells. Lymph nodes are found all through the body, and act as filters or traps for foreign particles. They contain white blood cells that use oxygen to process. Thus they are important in the proper functioning of the immune system[WP]." [GAID:947, Wikipedia:Lymph_node] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0000784 xref: EFO:0000872 xref: FMA:5034 xref: GAID:947 xref: HOG:0001273 xref: MA:0000139 xref: MAT:0000442 xref: ncithesaurus:Lymph_Node is_a: UBERON:0000064 ! organ part relationship: continuous_with UBERON:0001473 ! lymphatic vessel relationship: has_part UBERON:0002391 ! lymph relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: UBERON:0000030 name: lamina propria def: "A thin layer of loose connective tissue which lies beneath the epithelium and together with the epithelium constitutes the mucosa[WP]. The lamina propria contains capillaries and a central lacteal (lymph vessel) in the small intestine, as well as lymphoid tissue. Lamina propria also contains glands with the ducts opening on to the mucosal epithelium, that secrete mucus and serous secretions." [Wikipedia:Lamina_propria] subset: uberon_slim synonym: "lamina propria mucosa" EXACT [] synonym: "lamina propria mucosae" EXACT [] xref: BTO:0002330 xref: ncithesaurus:Lamina_Propria is_a: UBERON:0002384 ! connective tissue relationship: adjacent_to UBERON:0000483 ! epithelium relationship: part_of UBERON:0000344 ! mucosa [Term] id: UBERON:0000031 name: lamina propria of trachea synonym: "trachea lamina propria" EXACT [] synonym: "tracheal lamina propria" EXACT [] xref: FMA:62517 xref: MA:0001858 xref: ncithesaurus:Trachea_Lamina_Propria is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0003571 ! implied link automatically realized ! trachea connective tissue intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0001005 ! trachea relationship: part_of UBERON:0001005 ! trachea [Term] id: UBERON:0000032 name: cranial structure def: "Bony structure in the head of the animal. Encompasses structures consisting of bone or sclerite." [Wikipedia:Cranium] subset: uberon_slim synonym: "cranium" RELATED [] synonym: "skull" RELATED [] xref: HAO:0000234 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0000033 name: head alt_id: UBERON:FBbt_00000004-FBbt_00003007-FMA_46565-FMA_7154-FMA_87596-MA_0000023-MA_0000316-MIAA_0000017-MIAA_0000149-MIAA_0000294-MIAA_0000340-WBbt_0005739-XAO_0003024-ZFA_0000737-ZFA_0001114 def: "The head is the anterior-most division of the body [GO]. Subdivision of skeletal system which consists of the skeleton of the head and its joints. // Cardinal body part, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the skull, it is partially surrounded by skin of head. Examples: There is only one head. // anterior-most body region containing the pharynx. // Organism subdivision that is the part of the body consisting of the cranial and pharyngeal regions. // Skeletal system which is part of the skull, including the splanchnocranium, chondrocranium, and dermatocranium. // Organism subdivision which is the part of the body which consists of the cranial and pharygeal regions." [WB:rynl, Wikipedia:Head, ZFA:0001114, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "adult head" EXACT [] synonym: "chondrocranium" RELATED [] synonym: "cranial skeleton" RELATED [] synonym: "epicranial plate" RELATED [] synonym: "Head" EXACT [] synonym: "head tissue" RELATED [] xref: BILA:0000115 xref: BTO:0000282 xref: EFO:0000964 xref: EHDAA:9184 xref: FBbt:00000004 xref: FMA:7154 xref: GAID:61 xref: galen:Head xref: HAO:0000397 xref: MA:0000023 xref: MAT:0000294 xref: MIAA:0000294 xref: ncithesaurus:Head xref: NIF_GrossAnatomy:birnlex_1230 xref: OpenCyc:Mx4rvVi6YJwpEbGdrcN5Y29ycA xref: TAO:0001114 xref: WBbt:0005739 xref: XAO:0003024 xref: ZFA:0001114 is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0000035 name: primary ovarian follicle synonym: "Folliculus ovaricus primarius" EXACT [FMA:18634] synonym: "folliculus ovaricus primarius" EXACT [] synonym: "preantral follicle of ovary" EXACT [] synonym: "primary egg follicle" RELATED [] synonym: "primary follicle of ovary" EXACT [FMA:18634] xref: FMA:18634 is_a: UBERON:0001305 ! follicle of ovary [Term] id: UBERON:0000036 name: secondary ovarian follicle synonym: "antral follicle of ovary" EXACT [] synonym: "Folliculus ovaricus secondarius" EXACT [FMA:18637] synonym: "folliculus ovaricus secondarius" EXACT [] synonym: "secondary egg follicle" RELATED [] synonym: "secondary follicle of ovary" EXACT [] xref: FMA:18637 is_a: UBERON:0001305 ! follicle of ovary relationship: develops_from UBERON:0000035 ! primary ovarian follicle [Term] id: UBERON:0000037 name: tertiary ovarian follicle def: "." [Wikipedia:Graafian_follicle] subset: uberon_slim synonym: "Folliculus ovaricus tertiarius" EXACT [FMA:18641] synonym: "folliculus ovaricus tertiarius" EXACT [] synonym: "Folliculus ovaricus tertiarius (vesiculous)" EXACT [FMA:18641] synonym: "folliculus ovaricus tertiarius (vesiculous)" EXACT [] synonym: "Graafian follicle" EXACT [] synonym: "graafian follicle" EXACT [] synonym: "tertiary egg follicle" RELATED [] xref: FMA:18641 xref: ncithesaurus:Graafian_Follicle is_a: UBERON:0001305 ! follicle of ovary relationship: develops_from UBERON:0000036 ! secondary ovarian follicle [Term] id: UBERON:0000038 name: follicular fluid def: "The fluid surrounding the OVUM and GRANULOSA CELLS in the Graafian follicle ( OVARIAN FOLLICLE). The follicular fluid contains sex steroids, glycoprotein hormones, plasma proteins, mucopolysaccharides, and enzymes." [MESH:D015571, Wikipedia:Follicular_fluid] comment: Follicular fluid is a liquid which fills the follicular antrum and surrounds the ovum in an ovarian follicle. This fluid is rich in hyaluronic acid. subset: uberon_slim synonym: "antral fluid, ovarian follicle" RELATED [] synonym: "liquor folliculi" RELATED [] is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0001305 ! follicle of ovary relationship: surrounded_by UBERON:0000039 ! follicular antrum [Term] id: UBERON:0000039 name: follicular antrum def: "Region of ovarian follicle filled with follicular fluid." [http://en.wikipedia.org/wiki/Follicular_antrum, Wikipedia:Follicular_antrum] subset: uberon_slim is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001305 ! follicle of ovary [Term] id: UBERON:0000040 name: Leydig's organ def: "Along with the spleen and special tissue around the gonads, this structure produces red blood cells and it is nestled along the top and bottom of the esophagus. Found in elasmobranchs (sharks and rays) but with some exceptions. Leydig's organ can be quite large - a 1.6-kilogram (3.5-pound) one was reported from a 1.8-metre (6-foot) long Bluntnose Sixgill Shark (Hexanchus griseus)" [http://www.elasmo-research.org/education/topics/p_blood_cells.htm, Wikipedia:Leydig's_organ] subset: uberon_slim is_a: UBERON:0003103 ! compound organ [Term] id: UBERON:0000041 name: dermal denticle def: "small outgrowths which cover the skin of many cartilaginous fish including sharks. They are similar in structure to teeth, and teeth may have evolved from denticle-like structures in primitive fish.[citation needed] The placoid scales in sharks are formed of dentine with dermal papillae located in the core. These scales develop from the dermal layer of the skin, which is in contrast to the epidermal development seen the in the elasmoid scales of tetrapods. The shape of denticle varies from species to species and can be used in identification. Studies have found that the denticles create tiny vortices that reduce drag to make swimming more efficient. Denticles also allow sharks to swim silently compared to other fish that generate considerable noise when they ply the water." [http://en.wikipedia.org/wiki/Dermal_denticle, Wikipedia:Dermal_denticle] comment: TODO check dentin def subset: uberon_slim synonym: "placoid scale" EXACT [] is_a: UBERON:0000481 ! multi-tissue structure relationship: has_part UBERON:0001751 ! dentine [Term] id: UBERON:0000042 name: serous membrane def: "a smooth membrane consisting of a thin layer of cells which excrete serous fluid. Serous membranes line and enclose several body cavities, known as serous cavities, where they secrete a lubricating fluid which reduces friction from muscle movement. Serosa is not to be confused with adventitia, a connective tissue layer which binds together structures rather than reducing friction between them[WP]." [Wikipedia:Serosa, Wikipedia:Serous_membrane] comment: TODO - add generic membrane parent? subset: uberon_slim synonym: "serosa" EXACT [] xref: FMA:45637 xref: FMA:9581 xref: ncithesaurus:Serosa is_a: UBERON:0000061 ! anatomical structure relationship: has_part UBERON:0001136 ! mesothelium relationship: has_part UBERON:0002384 ! connective tissue [Term] id: UBERON:0000043 name: tendon def: "A fibrous, strong, connective tissue that connects muscle to bone or integument and is capable of withstanding tension. Tendons are similar to ligaments except that ligaments join one bone to another. Tendons and muscles work together and can only exert a pulling force." [BTO:0000421, http://en.wikipedia.org/wiki/Tendon, OMD:connective+tissue, OMD:tendon, Wikipedia:Tendon] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Tendon" EXACT [] xref: BTO:0001356 xref: EFO:0000952 xref: FMA:9721 xref: GAID:276 xref: HAO:0000996 xref: HOG:0001286 xref: MA:0000115 xref: ncithesaurus:Tendon xref: OpenCyc:Mx4rvVjefJwpEbGdrcN5Y29ycA xref: XAO:0000173 is_a: UBERON:0002384 ! connective tissue relationship: attached_to UBERON:0002385 ! muscle tissue [Term] id: UBERON:0000044 name: dorsal root ganglion def: "Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves" [Wikipedia:Dorsal_root_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "dorsal root ganglia" RELATED [] synonym: "Dorsal root ganglion" EXACT [] synonym: "dorsal root ganglion" EXACT [] synonym: "DRG" RELATED [] synonym: "Ganglion spinalis" EXACT [] synonym: "ganglion spinalis" EXACT [] synonym: "Spinal ganglion" EXACT [] synonym: "spinal ganglion" RELATED [] xref: BTO:0001264 xref: EFO:0000900 xref: EHDAA:2899 xref: FMA:5888 xref: HOG:0000222 xref: MA:0000232 xref: MAT:0000162 xref: MIAA:0000162 xref: ncithesaurus:Dorsal_Root_Ganglion xref: NIF_GrossAnatomy:birnlex_2596 xref: TAO:0000200 xref: XAO:0000210 xref: ZFA:0000200 is_a: UBERON:0001800 ! sensory ganglion is_a: UBERON:0003339 ! implied link automatically realized ! ganglion of central nervous system intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0002261 ! dorsal root relationship: develops_from UBERON:0003083 ! trunk neural crest relationship: part_of UBERON:0002261 ! dorsal root [Term] id: UBERON:0000045 name: ganglion alt_id: UBERON:FBbt_00005137-FMA_5884-FMA_5888-MA_0000232-MA_0002406-MIAA_0000162-MIAA_0000207-MIAA_0000343-WBbt_0005189-XAO_0000209-XAO_0000210-ZFA_0000190-ZFA_0000200 def: "Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system. // Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com) //" [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, NLM:ganglion, WB:rynl, Wikipedia:Ganglion, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ganglia" RELATED [] synonym: "Ganglion" EXACT [] synonym: "invertebrate ganglion" EXACT [] xref: BTO:0000497 xref: EFO:0000890 xref: EFO:0000899 xref: EHDAA:2897 xref: EHDAA:4662 xref: EHDAA:5621 xref: EHDAA:918 xref: FBbt:00005137 xref: FMA:5884 xref: HOG:0000156 xref: MA:0002406 xref: MAT:0000207 xref: MAT:0000343 xref: MIAA:0000207 xref: MIAA:0000343 xref: ncithesaurus:Ganglion xref: NIF_GrossAnatomy:birnlex_2596 xref: TAO:0000190 xref: WBbt:0005189 xref: XAO:0000209 xref: ZFA:0000190 is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0000046 name: stemma def: "eye-spots which may be set into a pit to reduce the angles of light that enters and affects the eyespot, to allow the organism to deduce the angle of incoming light" [Wikipedia:Eye#Pit_eyes, Wikipedia:Stemma] subset: uberon_slim synonym: "pit eye" EXACT [Wikipedia:Eye#Pit_eyes] is_a: UBERON:0000047 ! simple eye [Term] id: UBERON:0000047 name: simple eye def: "An eye with one concave chamber. Note that \"simple\" does not imply a reduced level of complexity or acuity." [Wikipedia:Eye#Simple_eyes] subset: uberon_slim is_a: UBERON:0000970 ! eye [Term] id: UBERON:0000048 name: pinhole eye def: "Simple eye that has a small aperture (which may be adjustable) and deep pit. It is only found in the nautiloids." [DOI:10.1146/annurev.ne.15.030192.000245, Wikipedia:Pinhole_eye] subset: uberon_slim is_a: UBERON:0000047 ! simple eye [Term] id: UBERON:0000049 name: spherical lensed eye def: "simple eye that consists of a lens of one refractive index" [Wikipepedia:Eye#Spherical_lensed_eye] is_a: UBERON:0000047 ! simple eye [Term] id: UBERON:0000050 name: simple eye with multiple lenses def: "simple eye that has two or more lenses. Some marine organisms bear more than one lens; for instance the copeopod Pontella has three. The outer has a parabolic surface, countering the effects of spherical aberration while allowing a sharp image to be formed. Copilla's eyes have two lenses, which move in and out like a telescope" [Wikipedia:Eye#Multiple_lenses] subset: uberon_slim is_a: UBERON:0000047 ! simple eye relationship: has_part UBERON:0000965 ! lens [Term] id: UBERON:0000051 name: fornix of vagina def: "." [Wikipedia:Fornix_vaginae] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "fornix" BROAD [] synonym: "vaginal fornix" EXACT [] xref: FMA:19985 xref: ncithesaurus:Vaginal_Fornix is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0000052 name: fornix of brain def: "." [Wikipedia:Fornix_of_brain] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "brain fornix" EXACT [] synonym: "fornix" BROAD [] xref: MA:0002747 xref: NIF_GrossAnatomy:birnlex_705 is_a: UBERON:0002437 ! cerebral white matter [Term] id: UBERON:0000053 name: macula lutea def: "Oval yellow spot near the center of the retina of the human eye. It has a diameter of around 5 mm and is often histologically defined as having two or more layers of ganglion cells. Near its center is the fovea, a small pit that contains the largest concentration of cone cells in the eye and is responsible for central vision, and also contains the parafovea and perifovea." [Wikipedia:Macula_lutea] subset: uberon_slim synonym: "Macula" EXACT [] synonym: "macula" EXACT [] synonym: "Macula lutea" EXACT [] synonym: "maculae" RELATED [] xref: BTO:0003015 xref: FMA:58637 xref: GAID:909 xref: MA:0001306 xref: ncithesaurus:Macula xref: NIF_GrossAnatomy:birnlex_2540 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0000054 name: macula def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern." [ZFIN:curator] subset: uberon_slim synonym: "Macula" EXACT [] synonym: "macula" EXACT [] synonym: "maculae" RELATED [] xref: ncithesaurus:Macula xref: TAO:0000386 xref: ZFA:0000386 is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0000055 name: vessel def: "A tubular structure that contains, conveys body fluid, suchas blood or lymph." [UBERON:cjm] is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000056 name: ureter def: "The ureter is one of a pair of thick-walled tubes that transports urine from the kidney pelvis to the urinary bladder[GO]. Muscular duct that propels urine from the kidneys to the urinary bladder, or related organs. In humans, organ with organ cavity which connects the renal sinus to the urinary bladder. Examples: There are only two ureters, the right and the left ureters." [Wikipedia:Ureter] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0001409 xref: EFO:0000930 xref: EHDAA:9341 xref: FBbt:00005793 xref: FMA:9704 xref: GAID:438 xref: HOG:0000605 xref: MA:0000378 xref: MAT:0000120 xref: MIAA:0000120 xref: ncithesaurus:Ureter xref: OpenCyc:Mx4rvhmm6JwpEbGdrcN5Y29ycA xref: WBbt:0005777 xref: XAO:0000144 is_a: UBERON:0000062 ! organ relationship: continuous_with UBERON:0001255 ! urinary bladder relationship: continuous_with UBERON:0002113 ! kidney [Term] id: UBERON:0000057 name: urethra def: "Organ with organ cavity which connects the cavity of the urinary bladder to the exterior. Examples: There is only one urethra." [Wikipedia:Urethra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0001426 xref: EFO:0000931 xref: FMA:19667 xref: GAID:390 xref: HOG:0001264 xref: MA:0000379 xref: MAT:0000121 xref: MIAA:0000121 xref: ncithesaurus:Urethra xref: OpenCyc:Mx4rvVjkypwpEbGdrcN5Y29ycA xref: WBbt:0005777 xref: XAO:0000153 is_a: UBERON:0000062 ! organ relationship: continuous_with UBERON:0001255 ! urinary bladder [Term] id: UBERON:0000058 name: duct def: "A tube shaped portion of tissue lined with epithelial cells that collects secretions and routes them to their destination[ZFA]." [Wikipedia:Duct_(anatomy), ZFA:0005171] xref: FMA:30320 xref: galen:Duct xref: HAO:0000282 xref: ncithesaurus:Duct xref: ZFA:0005171 is_a: UBERON:0000063 ! organ segment [Term] id: UBERON:0000059 name: large intestine def: "The large intestine consists of the cecum and colon[WP]. Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal. Examples: There is only large intestine [FMA]." [Wikipedia:Large_intestine_(anatomy)] xref: BTO:0000706 xref: EFO:0000840 xref: FMA:7201 xref: galen:LargeIntestine xref: HOG:0000054 xref: MA:0000333 xref: MIAA:0000046 xref: ncithesaurus:Large_Intestine xref: OpenCyc:Mx4rvVkF5pwpEbGdrcN5Y29ycA xref: XAO:0000131 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001555 ! gut [Term] id: UBERON:0000060 name: anatomical wall def: "anatomical structure with bona-fide boundary that functions as a barrier." [UBERON:cjm] synonym: "wall" EXACT [] xref: ncithesaurus:Wall is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000061 name: anatomical structure alt_id: UBERON:CARO_0000003-CARO_0000024-FBbt_00000001-FBbt_00007001-FMA_67135-FMA_67498-WBbt_0003760-WBbt_0007833-XAO_0003000-XAO_0003041-ZFA_0000037-ZFA_0000496-ZFA_0001094 def: "Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome." [CARO:0000003] comment: This class was created automatically from a combination of ontologies synonym: "Biological structure" EXACT [] synonym: "biological structure" EXACT [] xref: BILA:0000003 xref: CARO:0000003 xref: FBbt:00007001 xref: FMA:67135 xref: HAO:0000003 xref: TAO:0000037 xref: XAO:0003000 xref: ZFA:0000037 is_a: UBERON:0000465 ! material anatomical entity [Term] id: UBERON:0000062 name: organ def: "Anatomical structure that performs a specific function or group of functions [WP]. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions[GO]." [Wikipedia:Organ_(anatomy)] comment: More specific definition from CARO -- Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types. xref: BILA:0000053 xref: CARO:0000024 xref: EFO:0000634 xref: FMA:67498 xref: HOG:0000671 xref: ncithesaurus:Organ xref: OpenCyc:Mx4rwP3iWpwpEbGdrcN5Y29ycA xref: XAO:0003041 xref: ZFA:0000496 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000467 ! anatomical system [Term] id: UBERON:0000063 name: organ segment def: "Organ region with one or more fixed or anchored fiat boundaries. Examples: artery, trunk of nerve, cervical part of esophagus, pelvic part of vagina, horn of thyroid cartilage, anterior segment of eyeball[FMA]." [FMA:86140] xref: FMA:86140 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000064 name: organ part def: "anatomical structure which has as its direct parts two or more types of tissue and is continuous with one or more anatomical structures likewise constituted by two or more portions of tissues distinct from those of their complement. Examples: osteon, cortical bone, neck of femur, bronchopulmonary segment, left lobe of liver, anterior right side of heart, interventricular branch of left coronary artery, right atrium, mitral valve, head of pancreas[FMA]." [FMA:82472] synonym: "cardinal organ part" EXACT [] xref: EFO:0000635 xref: FMA:82472 is_a: UBERON:0000061 ! anatomical structure disjoint_from: UBERON:0000062 ! organ relationship: part_of UBERON:0000062 ! organ [Term] id: UBERON:0000065 name: respiratory tract def: "anatomical structure that is part of the respiratory system. In mammals consists of upper and lower tracts" [UBERON:cjm] xref: HOG:0000393 is_a: UBERON:0000061 ! anatomical structure relationship: develops_from UBERON:0000925 ! endoderm relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0000066 name: fully formed stage def: "The stage of development at which the animal is fully formed, including immaturity and maturity. Includes both juvenile stage, and adult stage. " [UBERON:cjm] synonym: "adult stage" BROAD [] synonym: "fully formed animal stage" EXACT [] synonym: "juvenile-adult stage" EXACT [] xref: FBdv:00005369 xref: XAO:1000009 is_a: UBERON:0000092 ! post-embryonic stage relationship: preceded_by UBERON:0000111 ! organogenesis stage [Term] id: UBERON:0000067 name: embryo stage part def: "A stage that is part of the embryo stage." [UBERON:cjm] synonym: "embryonic stage" EXACT [] xref: FBdv:00005289 xref: XAO:1000012 is_a: UBERON:0000105 ! life cycle stage intersection_of: UBERON:0000105 ! life cycle stage intersection_of: part_of UBERON:0000068 ! embryo stage relationship: part_of UBERON:0000068 ! embryo stage [Term] id: UBERON:0000068 name: embryo stage def: "A life cycle stage that starts with fertilization and ends with the fully formed embryo." [] synonym: "embryogenesis" RELATED [] is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000104 ! life cycle [Term] id: UBERON:0000069 name: larval stage synonym: "larva stage" EXACT [] xref: EFO:0001303 xref: FBdv:00005336 is_a: UBERON:0000092 ! post-embryonic stage relationship: directly_preceded_by UBERON:0000068 ! embryo stage [Term] id: UBERON:0000070 name: pupal stage synonym: "pupa stage" EXACT [] xref: FBdv:00005349 is_a: UBERON:0000092 ! post-embryonic stage relationship: directly_preceded_by UBERON:0000069 ! larval stage [Term] id: UBERON:0000071 name: death stage def: "End of the life of an organism." [XAO:0000437] synonym: "death" EXACT [] xref: ncithesaurus:Death xref: XAO:0000437 is_a: UBERON:0000105 ! life cycle stage relationship: finishes UBERON:0000104 ! life cycle relationship: part_of UBERON:0000104 ! life cycle [Term] id: UBERON:0000072 name: segment of respiratory tract xref: MA:0000434 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000065 ! respiratory tract [Term] id: UBERON:0000073 name: regional part of nervous system synonym: "neural segment" EXACT [] synonym: "neuromere" EXACT [] xref: FBbt:00005140 xref: TAO:0001328 xref: ZFA:0001328 is_a: UBERON:0000061 ! anatomical structure created_by: Melissa Haendel creation_date: 2009-06-18T09:00:04Z [Term] id: UBERON:0000074 name: renal glomerulus synonym: "glomerular tuft " RELATED [] synonym: "glomerulus" NARROW [] synonym: "renal corpuscle " RELATED [] xref: BTO:0000530 xref: FMA:15624 xref: MA:0001657 xref: XAO:0000146 xref: ZFA:0001288 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001230 ! glomerular capsule created_by: Melissa Haendel creation_date: 2009-06-18T09:26:37Z [Term] id: UBERON:0000075 name: subdivision of skeleton synonym: "skeleton part" RELATED [] xref: FMA:23879 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system relationship: part_of UBERON:0001434 ! skeleton created_by: cjm creation_date: 2009-07-30T03:53:53Z [Term] id: UBERON:0000076 name: external ectoderm def: "." [Wikipedia:External_ectoderm] comment: In vertebrates, the ectoderm has three parts: external ectoderm (also known as surface ectoderm), the neurectoderm (neural crest, and neural tube). synonym: "surface ectoderm" EXACT [] xref: FMA:87656 xref: ncithesaurus:Surface_Ectoderm is_a: UBERON:0000923 ! germ layer relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:0000077 name: mixed endoderm/mesoderm-derived structure def: "An anatomical structure that develops from the endoderm." [UBERON:cjm] comment: Grouping term for query purposes is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: develops_from UBERON:0000925 ! endoderm intersection_of: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0000078 name: mixed ectoderm/mesoderm/endoderm-derived structure def: "An anatomical structure that develops from the endoderm." [UBERON:cjm] comment: Grouping term for query purposesnGrouping term for query purposes is_a: UBERON:0000077 ! mixed endoderm/mesoderm-derived structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: develops_from UBERON:0000924 ! ectoderm intersection_of: develops_from UBERON:0000925 ! endoderm intersection_of: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0000079 name: male reproductive system synonym: "male genitalia" NARROW [] xref: BTO:0000082 xref: EFO:0000970 xref: FBbt:00004828 xref: HAO:0000505 xref: HOG:0000725 xref: MA:0000396 xref: ncithesaurus:Male_Reproductive_System xref: OpenCyc:Mx4rvViCepwpEbGdrcN5Y29ycA is_a: UBERON:0000990 ! reproductive system intersection_of: UBERON:0000990 ! reproductive system intersection_of: part_of UBERON:0003101 ! male organism disjoint_from: UBERON:0000474 ! female reproductive system relationship: part_of UBERON:0003101 ! male organism [Term] id: UBERON:0000080 name: mesonephros def: "In mammals, the mesonephros is the second of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the mesonephros will form the mature kidney[GO]. One of three excretory organs that develop in vertebrates. It serves as the main excretory organ of aquatic vertebrates and as a temporary kidney in higher vertebrates. composed of the mesonephric duct (also called the Wolffian duct), mesonephric tubules, and associated capillary tufts. A single tubule and its associated capillary tuft is called a mesonephric excretory unit; these units are similar in structure and function to nephrons of the adult kidney. The mesonephros is derived from intermediate mesoderm in the vertebrate embryo." [GO:0001823, Wikipedia:Mesonephros] xref: EFO:0000928 xref: FMA:72171 xref: HOG:0000038 xref: ncithesaurus:Mesonephros xref: ZFA:0000529 is_a: UBERON:0002113 ! kidney relationship: develops_from UBERON:0002120 ! pronephros [Term] id: UBERON:0000081 name: metanephros def: "In mammals, the metanephros is the excretory organ of the fetus, which develops into the mature kidney and is formed from the rear portion of the nephrogenic cord[GO]. During the fifth week of gestation, the mesonephric duct develops an outpouching, the ureteric bud, near its attachment to the cloaca. This bud, also called the metanephrogenic diverticulum, grows posteriorly and towards the head of the embryo. The elongated stalk of the ureteric bud, the metanephric duct, later forms the ureter. As the cranial end of the bud extends into the intermediate mesoderm, it undergoes a series of branchings to form the collecting duct system of the kidney. It also forms the major and minor calyces and the renal pelvis." [GO:0001656, Wikipedia:Metanephros#Metanephros] xref: FMA:72172 xref: HOG:0000039 xref: ncithesaurus:Metanephros is_a: UBERON:0002113 ! kidney relationship: develops_from UBERON:0000080 ! mesonephros [Term] id: UBERON:0000082 name: adult mammalian kidney is_a: UBERON:0002113 ! kidney relationship: develops_from UBERON:0000081 ! metanephros relationship: develops_from UBERON:0000084 ! ureteric bud [Term] id: UBERON:0000083 name: mesonephric tubule def: "Genital ridge that is next to the mesonephros." [Wikipedia:Mesonephric_tubules] xref: HOG:0000500 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0000084 name: ureteric bud def: "a protrusion from the mesonephric duct during the development of the urinary and reproductive organs. It later develops into the adult kidney, except for the nephrons, which, in contrast, originate from the metanephric blastema." [Wikipedia:Ureteric_bud] synonym: "metanephric diverticulum" RELATED [] xref: BTO:0001646 xref: HOG:0000541 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0003074 ! mesonephric duct [Term] id: UBERON:0000085 name: morula def: "An embryo at an early stage of embryonic development, consisting of cells (called blastomeres) in a solid ball contained within the zona pellucida." [Wikipedia:Morula] xref: BTO:0001508 xref: ncithesaurus:Morula is_a: UBERON:0000922 ! embryo relationship: existence_starts_and_ends_during UBERON:0000108 ! blastula stage relationship: surrounded_by UBERON:0000086 ! zona pellucida [Term] id: UBERON:0000086 name: zona pellucida def: "A glycoprotein membrane surrounding the plasma membrane of an oocyte. It is a vital constitutive part of the latter, external but not extraneous to it. The zona pellucida first appears in multilaminar primary oocytes." [Wikipedia:Zona_pellucida] synonym: "vitelline membrane" RELATED [] xref: BTO:0003135 xref: EHDAA:31 xref: EHDAA:62 xref: FMA:18674 xref: GAID:410 xref: MA:0001715 xref: ncithesaurus:Zona_Pellucida is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000087 name: inner cell mass def: "Mass of cells inside the primordial embryo that will eventually give rise to the definitive structures of the fetus. This structure forms in the earliest steps of development, before implantation into the endometrium of the uterus has occurred. The ICM lies within the blastocoele (more correctly termed \"blastocyst cavity\", as it is not strictly homologous to the blastocoele of anamniote vertebrates) and is entirely surrounded by the single layer of cells called trophoblast." [Wikipedia:Inner_cell_mass] synonym: "embryoblast" RELATED [] synonym: "pluriblast" RELATED [] xref: EFO:0000547 xref: FMA:86557 xref: HOG:0000742 xref: ncithesaurus:Inner_Cell_Mass is_a: UBERON:0002050 ! embryonic structure relationship: surrounded_by UBERON:0000088 ! trophoblast [Term] id: UBERON:0000088 name: trophoblast def: "Aggregate of cells forming the outer layer of a blastocyst, which provide nutrients to the embryo and develop into a large part of the placenta. They are formed during the first stage of pregnancy and are the first cells to differentiate from the fertilized egg." [Wikipedia:Trophoblast] synonym: "trophoblast layer" RELATED [MP:0005031] xref: BTO:0001079 xref: FMA:83029 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000089 name: hypoblast def: "The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm. Kimmel et al, 1995." [Wikipedia:Hypodermis, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "hypoblast" EXACT [] synonym: "mesendoderm" RELATED [] xref: AAO:0000229 xref: EFO:0001930 xref: HOG:0001222 xref: MAT:0000418 xref: MIAA:0000418 xref: ncithesaurus:Hypoblast xref: TAO:0000117 xref: XAO:0003044 xref: ZFA:0000117 is_a: UBERON:0002050 ! embryonic structure relationship: adjacent_to UBERON:0002532 ! epiblast relationship: part_of UBERON:0000091 ! bilaminar disc [Term] id: UBERON:0000090 name: blastocele def: "fluid-filled central region of a blastocyst. A blastocoele forms during embryogenesis when a zygote (a fertilized ovum) divides into many cells through mitosis." [Wikipedia:Blastocele] synonym: "blastocyst cavity" RELATED [] synonym: "cleavage cavity" EXACT [] synonym: "segmentation cavity" EXACT [] is_a: UBERON:0002553 ! anatomical cavity relationship: surrounded_by UBERON:0002532 ! epiblast [Term] id: UBERON:0000091 name: bilaminar disc def: "the epiblast and the hypoblast, evolved from the embryoblast" [Wikipedia:Bilaminar_disc] is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0000087 ! inner cell mass [Term] id: UBERON:0000092 name: post-embryonic stage def: "stage succeeding embryo, including mature structure" [UBERON:cjm] is_a: UBERON:0000105 ! life cycle stage disjoint_from: UBERON:0000068 ! embryo stage relationship: part_of UBERON:0000104 ! life cycle relationship: preceded_by UBERON:0000068 ! embryo stage [Term] id: UBERON:0000093 name: sulcus def: "a depression or fissure in the surface of an organ." [Wikipedia:Sulcus_(anatomy)] is_a: UBERON:0000464 ! anatomical space created_by: cjm creation_date: 2009-04-09T06:23:22Z [Term] id: UBERON:0000094 name: membrane organ def: "Nonparenchymatous organ that primarily consists of dense connective tissue organized into a sheet which interconnects two or more organs, separates two or more body spaces from one another, or surrounds an organ or body part. Examples: interosseous membrane of forearm, obturator membrane, tympanic membrane, fibrous pericardium, fascia lata, dura mater. [FMA]" [FMA:7145] synonym: "membrane of organ" EXACT [] xref: FMA:7145 is_a: UBERON:0000062 ! organ created_by: cjm creation_date: 2009-07-30T05:19:13Z [Term] id: UBERON:0000095 name: cardiac neural crest def: "portion of neural crest that develops from the dorsal neural tube. It overlaps the vagal neural crest and migrates to populate the pharyngeal arches 3, 4 and 6 (producing structures in the head) and to the heart, forming connective tissue that separates the great vessels of the heart. [Wikipedia]" [Wikipedia:Cardiac_neural_crest] xref: ZFA:0001648 is_a: UBERON:0000479 ! portion of tissue created_by: cjm creation_date: 2009-07-30T07:57:38Z [Term] id: UBERON:0000100 name: blastopore def: "Structure around the opening into the archenteron during the embryonic stages of an organism. The distinction between protostomes and deuterostomes is based on the direction in which the mouth (stoma) develops in relation to the blastopore." [Wikipedia:Blastopore] xref: BTO:0001695 xref: XAO:0000208 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000101 name: lobe of lung def: "A lung lobe is one of the rounded projections that compose the lung[GO]." [GOC:GO] synonym: "lung lobe" EXACT [] synonym: "pulminory lobe" EXACT [] xref: FMA:7311 xref: ncithesaurus:Lung_Lobe is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0000102 name: lung vasculature def: "The lung vasculature is composed of the tubule structures that carry blood or lymph in the lungs[GO]." [GOC:GO] xref: FMA:73750 is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0002048 ! lung [Term] id: UBERON:0000103 name: life cycle stage boundary def: "Instant starting or ending a life cycle stage. These can be arbitrary/fiat." [UBERON:cjm] synonym: "life cycle stage transition event" EXACT [] synonym: "life cycle stage transition instant" EXACT [] xref: span:ProcessBoundary is_a: UBERON:0000000 ! processual entity disjoint_from: UBERON:0000105 ! life cycle stage [Term] id: UBERON:0000104 name: life cycle def: "An entire span of an organism's life, commencing with the zygote stage and ending in the death of the organism." [UBERON:cjm] synonym: "life" EXACT [] synonym: "lifespan" EXACT [] xref: FBdv_root:00000000 xref: ncithesaurus:Life is_a: UBERON:0000105 ! life cycle stage [Term] id: UBERON:0000105 name: life cycle stage def: "A spatiotemporal region encompassing some part of the life cycle of an organism." [UBERON:cjm] synonym: "developmental stage" EXACT [] xref: BILS:0000105 xref: EFO:0000399 xref: ncithesaurus:Developmental_Stage xref: XAO:1000000 xref: ZFS:0100000 is_a: UBERON:0000000 ! processual entity relationship: has_end UBERON:0000103 ! life cycle stage boundary relationship: has_start UBERON:0000103 ! life cycle stage boundary [Term] id: UBERON:0000106 name: zygote stage synonym: "one cell stage" RELATED [] xref: BILS:0000106 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage relationship: starts UBERON:0000104 ! life cycle [Term] id: UBERON:0000107 name: cleavage stage def: "The first few specialized divisions of an activated animal egg. // Stage consisting of division of cells in the early embryo. The zygotes of many species undergo rapid cell cycles with no significant growth, producing a cluster of cells the same size as the original zygote. The different cells derived from cleavage are called blastomeres and form a compact mass called the morula. Cleavage ends with the formation of the blastula." [GO:0040016, Wikipedia:Cleavage_(embryo)] xref: BILS:0000107 xref: EFO:0001290 xref: XAO:1000004 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage relationship: preceded_by UBERON:0000106 ! zygote stage [Term] id: UBERON:0000108 name: blastula stage xref: BILS:0000108 xref: EFO:0001282 xref: XAO:1000003 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage relationship: preceded_by UBERON:0000107 ! cleavage stage [Term] id: UBERON:0000109 name: gastrula stage xref: BILS:0000109 xref: EFO:0001296 xref: FBdv:00005317 xref: XAO:1000005 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage relationship: preceded_by UBERON:0000108 ! blastula stage [Term] id: UBERON:0000110 name: neurula stage def: "The formation of a tube from the flat layer of ectodermal cells known as the neural plate. This will give rise to the central nervous system." [GO:0001841] xref: BILS:0000110 xref: XAO:1000006 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage relationship: preceded_by UBERON:0000109 ! gastrula stage [Term] id: UBERON:0000111 name: organogenesis stage def: "Process by which the ectoderm, endoderm, and mesoderm develop into the internal organs of the organism." [Wikipedia:Organogenesis] synonym: "segmentation stage" RELATED [] xref: BILS:0000111 is_a: UBERON:0000067 ! implied link automatically realized ! embryo stage part is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000068 ! embryo stage relationship: preceded_by UBERON:0000110 ! neurula stage [Term] id: UBERON:0000112 name: juvenile stage def: "The stage of being a sexually immature adult animal." [XAO:1000010] xref: BILS:0000112 xref: EFO:0001300 xref: XAO:1000010 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000066 ! fully formed stage [Term] id: UBERON:0000113 name: post-juvenile adult stage alt_id: UBERON:MIAA_0000403-XAO_1000009 def: "The stage of being a sexually mature adult animal." [UBERON:cjm] synonym: "adult stage" BROAD [] xref: BILS:0000113 xref: MIAA:0000403 xref: ZFS:0000044 is_a: UBERON:0000105 ! life cycle stage relationship: part_of UBERON:0000066 ! fully formed stage relationship: preceded_by UBERON:0000112 ! juvenile stage [Term] id: UBERON:0000114 name: lung connective tissue xref: MA:0001782 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue is_a: UBERON:0003593 ! implied link automatically realized ! thoracic cavity connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002048 ! lung [Term] id: UBERON:0000115 name: lung epithelium xref: BTO:0001653 xref: MA:0001783 is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002048 ! lung [Term] id: UBERON:0000116 name: lung saccule def: "Primitive gas exchange portion of the lung composed of type I and type II cells[GO]." [GO:0060430] is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0000117 name: respiratory tube def: "A tube in the respiratory tract." [GO:0030323] is_a: UBERON:0000025 ! tube intersection_of: UBERON:0000025 ! tube intersection_of: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0000065 ! respiratory tract [Term] id: UBERON:0000118 name: lung bud def: "Structure derived from foregut that becomes a lung." [GO:0060431, Wikipedia:Lung_buds] synonym: "primary lung bud" EXACT [] xref: BTO:0001643 is_a: UBERON:0000062 ! organ relationship: develops_from UBERON:0000925 ! endoderm [Term] id: UBERON:0000119 name: cell layer def: "Portion of tissue, that consists of one or more layers of cells connected to each other by cell junctions" [UBERON:cjm] synonym: "cell sheath" RELATED [] synonym: "layer of cells" EXACT [] is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0000120 name: blood brain barrier def: "Cell layer consisting of lining cells that separates the central nervous system and the bloodstream. The BBB may consist of endothelial cells or glial cells. An endothelial barrier may have arisen independently several times during evolution. In bichir and lungfish the barrier is formed by brain endothelial cells, while in sturgeon it is formed by a complex perivascular glial sheath, but with no detectable tight junctions." [DOI:10.1002/glia.20642, Wikipedia:Blood-brain_barrier] synonym: "BBB" RELATED [] synonym: "blood-brain barrier" EXACT [] xref: ncithesaurus:Blood-Brain_Barrier is_a: UBERON:0000119 ! cell layer relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid relationship: adjacent_to UBERON:0000955 ! brain [Term] id: UBERON:0000121 name: perineurium def: "Connective tissue surrounding a fascicle." [Wikipedia:Perineurium] xref: BTO:0003153 xref: FMA:52585 xref: ncithesaurus:Perineurium is_a: UBERON:0002384 ! connective tissue relationship: surrounds UBERON:0001019 ! fascicle [Term] id: UBERON:0000122 name: nerve fiber bundle def: "multi-cell component structure consisting of a cluster of nerve fibers." [UBERON:cjm] synonym: "funiculus" EXACT [] xref: FBbt:00005099 xref: FMA:76738 is_a: UBERON:0000477 ! anatomical cluster relationship: has_part UBERON:0001021 ! nerve [Term] id: UBERON:0000123 name: endodeurium def: "a layer of delicate connective tissue that encloses the myelin sheath of a nerve fiber within a funiculus." [Wikipedia:Endodeurium] xref: FMA:52586 is_a: UBERON:0002384 ! connective tissue relationship: surrounds UBERON:0001021 ! nerve [Term] id: UBERON:0000124 name: epineurium def: "outermost layer of connective tissue surrounding a peripheral nerve. It includes the blood vessels supplying the nerve. It consists of adipose tissue and fibrocollagenous tissues." [Wikipedia:Epineurium] xref: BTO:0003154 xref: FMA:12234 xref: ncithesaurus:Epineurium is_a: UBERON:0002384 ! connective tissue relationship: surrounds UBERON:0002003 ! peripheral nerve [Term] id: UBERON:0000125 name: neural nucleus def: "Anatomical structure consisting of a discrete aggregate of neuronal soma[GO]." [GO:0048857, GO_REF:0000021, Wikipedia:Nucleus_(neuroanatomy)] synonym: "nucleus" BROAD [] synonym: "nucleus of neuraxis" RELATED [] xref: FMA:83686 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0000126 name: cranial nerve nucleus def: "collection of neurons (gray matter) in the brain stem that is associated with one or more cranial nerves." [Wikipedia:Cranial_nerve_nucleus] synonym: "Nucleus of cranial nerve" EXACT [] synonym: "nucleus of cranial nerve" EXACT [] xref: FMA:54501 is_a: UBERON:0002308 ! nucleus of brain intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0001785 ! cranial nerve [Term] id: UBERON:0000127 name: facial nucleus synonym: "facial nerve nucleus" EXACT [] xref: FMA:54572 xref: ncithesaurus:Facial_Nerve_Nucleus is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0001647 ! facial nerve relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0000128 name: olivary body def: "prominent oval structure in the medulla oblongata, present in pairs, the lower portion of the brainstem. They contain the olivary nuclei" [Wikipedia:Olivary_body] synonym: "olive" RELATED [] synonym: "olive body" EXACT [] is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0000151 name: pectoral fin def: "The paired pectoral fins are located on each side, usually just behind the operculum, and are homologous to the forelimbs of tetrapods." [Wikipedia:Pectoral_fin#Fins] xref: TAO:0001161 xref: ZFA:0001161 is_a: UBERON:0002534 ! fin [Term] id: UBERON:0000152 name: pelvic fin def: "The paired pelvic or ventral fins are located ventrally below the pectoral fins. They are homologous to the hindlimbs of tetrapods. The pelvic fin assists the fish in going up or down through the water, turning sharply, and stopping quickly." [Wikipedia:Pectoral_fin#Fins] xref: TAO:0001184 xref: ZFA:0001184 is_a: UBERON:0002534 ! fin [Term] id: UBERON:0000153 name: anterior region of body is_a: UBERON:0002100 ! trunk [Term] id: UBERON:0000154 name: posterior region of body is_a: UBERON:0002100 ! trunk [Term] id: UBERON:0000155 name: theca cell layer def: "A layer of the ovarian follicles. They appear as the follicles become tertiary follicles. The theca folliculi are responsible for the production of testosterone from androstenedione in females, and indirectly the production of estrogens by supplying the neighboring granulosa cells with androstenedione that can then be used as a substrate for aromatase." [Wikipedia:Theca_of_follicle] synonym: "layer of theca cells" EXACT [] synonym: "theca cell layer of ovarian follicle" EXACT [] synonym: "theca folliculi" RELATED [] synonym: "theca of follicle" EXACT [] xref: FMA:18656 xref: TAO:0001113 xref: ZFA:0001113 is_a: UBERON:0000119 ! cell layer relationship: part_of UBERON:0001305 ! follicle of ovary [Term] id: UBERON:0000156 name: theca externa def: "The theca externa is the outer layers of the theca folliculi. It contains abundant collagen and is mainly supportive." [Wikipedia:Theca_externa#Theca_externa] xref: BTO:0002852 xref: FMA:18657 is_a: UBERON:0000158 ! membranous layer relationship: part_of UBERON:0000155 ! theca cell layer relationship: surrounds UBERON:0000157 ! theca interna [Term] id: UBERON:0000157 name: theca interna def: "Theca interna cells express receptors for luteinizing hormone, which when activated will stimulate the production of androstenedione from cholesterol by the enzyme desmolase. Androstenedione ultimately gives the granulosa cells the precursor substrate for estrogen manufacturing." [Wikipedia:Theca_externa#Theca_interna] xref: BTO:0002851 xref: FMA:18658 is_a: UBERON:0000158 ! membranous layer relationship: part_of UBERON:0000155 ! theca cell layer [Term] id: UBERON:0000158 name: membranous layer xref: FMA:82500 is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0000159 name: anal canal def: "Organ with organ cavity which is continuous proximally with the rectum and distally terminates with the anus. Examples: There is only one anal canal. // A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages. // a feature of the male tail, caudal to the proctodeum, where the vas deferens and the intestine open out jointly near the tail tip to discharge their contents." [WA:dh, Wikipedia:Anal_canal] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "adult alimentary canal" RELATED [] synonym: "Anal canal" EXACT [] synonym: "anal canal" EXACT [] synonym: "Anal canal viewed anatomically" EXACT [] synonym: "anal canal viewed anatomically" EXACT [] synonym: "anal pad" RELATED [] synonym: "anal region" EXACT [] synonym: "Anatomical anal canal" EXACT [] synonym: "anatomical anal canal" EXACT [] synonym: "anus" RELATED [] synonym: "cloaca" RELATED [] synonym: "cloacal chamber" RELATED [] synonym: "mesenteron" RELATED [] xref: BTO:0001978 xref: EFO:0000847 xref: EHDAA:2931 xref: FMA:15703 xref: galen:AnalCanal xref: HOG:0000395 xref: MA:0000330 xref: MAT:0000042 xref: MIAA:0000042 xref: ncithesaurus:Anal_Canal xref: TAO:0000330 xref: ZFA:0000330 is_a: UBERON:0002075 ! viscus relationship: part_of UBERON:0001046 ! hindgut relationship: part_of UBERON:0001353 ! anal part of perineum [Term] id: UBERON:0000160 name: intestine alt_id: UBERON:FBbt_00005785-FMA_15703-FMA_7199-MA_0000328-MA_0000330-MIAA_0000042-MIAA_0000043-WBbt_0005772-WBbt_0005774-XAO_0000129-XAO_0000244-ZFA_0000330-ZFA_0001338 def: "Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine." [GOC:GO, Wikipedia:Intestine] subset: uberon_slim synonym: "bowel" EXACT [] xref: BTO:0000648 xref: EFO:0000834 xref: FMA:7199 xref: galen:Intestine xref: HOG:0000056 xref: MA:0000328 xref: MIAA:0000043 xref: ncithesaurus:Intestine xref: TAO:0001338 xref: WBbt:0005772 xref: XAO:0000129 xref: ZFA:0001338 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001555 ! gut [Term] id: UBERON:0000161 name: orifice def: "Anatomical conduit that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis." [FMA:3724] synonym: "anatomical orifice" EXACT [FMA:3724] xref: FMA:3724 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0000162 name: cloaca def: "Posterior opening that serves as the only such opening for the intestinal and urinary tracts of certain animal species" [Wikipedia:Cloaca] comment: Human beings only have an embryonic cloaca, which is split up into separate tracts during the development of the urinary and reproductive organs[WP] synonym: "cloacal chamber" RELATED [] synonym: "vent" RELATED [] xref: AAO:0000095 xref: HOG:0001186 xref: ncithesaurus:Cloaca xref: WBbt:0005774 xref: XAO:0000244 xref: ZFA:0000330 is_a: UBERON:0000161 ! orifice [Term] id: UBERON:0000163 name: embryonic cloaca def: "Structure in the development of the urinary and reproductive organs." [Wikipedia:Cloaca_(embryology)] comment: compare UBERON:0000162 cloaca is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0003064 ! intermediate mesoderm relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0000164 name: urogenital sinus def: "part of the human body only present in the development of the urinary and reproductive organs. It is the ventral part of the cloaca, formed after the cloaca separates from the rectum. It eventually becomes, among other things, the bladder." [Wikipedia:Urogenital_sinus] xref: HOG:0000414 xref: ncithesaurus:Urogenital_Sinus is_a: UBERON:0000061 ! anatomical structure relationship: develops_from UBERON:0003064 ! intermediate mesoderm [Term] id: UBERON:0000165 name: mouth def: "First portion of the alimentary canal that receives food and begins digestion by mechanically breaking up the solid food particles into smaller pieces and mixing them with saliva. The oral mucosa is the mucous membrane epithelium lining the inside of the mouth." [Wikipedia:Mouth] subset: uberon_slim synonym: "adult mouth" EXACT [] xref: BTO:0001090 xref: EFO:0000825 xref: FMA:49184 xref: GAID:75 xref: HOG:0000812 xref: MA:0002474 xref: MAT:0000038 xref: MIAA:0000038 xref: OpenCyc:Mx4rvVidh5wpEbGdrcN5Y29ycA xref: TAO:0000547 xref: XAO:0003029 xref: ZFA:0000547 is_a: UBERON:0000061 ! anatomical structure relationship: develops_from UBERON:0000930 ! stomodeum relationship: part_of UBERON:0001555 ! gut [Term] id: UBERON:0000166 name: oral opening def: "The opening of the head through which food passes into the body." [NLM:mouth] subset: uberon_slim synonym: "adult mouth" RELATED [] synonym: "mouth" RELATED [] synonym: "Oral part of face" EXACT [] synonym: "oral part of face" EXACT [] synonym: "Oral region" EXACT [] synonym: "oral region" EXACT [] synonym: "Subdivision of mouth" EXACT [] synonym: "subdivision of mouth" EXACT [] xref: EHDAA:542 xref: FMA:59806 xref: HOG:0000280 xref: MA:0000341 xref: TAO:0000590 xref: ZFA:0000590 is_a: UBERON:0000161 ! orifice relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0000167 name: oral cavity subset: uberon_slim synonym: "cavity of mouth" EXACT [] xref: AAO:0000053 xref: EFO:0001975 xref: EHDAA:6970 xref: FMA:20292 xref: HAO:0000669 xref: HOG:0000188 xref: ncithesaurus:Oral_Cavity xref: TAO:0001027 xref: WBbt:0005255 xref: XAO:0000126 xref: ZFA:0001027 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0000168 name: segment of colon xref: FMA:222905 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001155 ! colon [Term] id: UBERON:0000170 name: pair of lungs synonym: "Lungs" EXACT [] synonym: "lungs" EXACT [] synonym: "Lungs pair" EXACT [] synonym: "lungs pair" EXACT [] synonym: "Pair of lungs" EXACT [] synonym: "Set of lungs" EXACT [] synonym: "set of lungs" EXACT [] xref: BTO:0000763 xref: EFO:0000934 xref: FMA:68877 xref: ncithesaurus:Lung xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA relationship: has_part UBERON:0002167 ! right lung relationship: has_part UBERON:0002168 ! left lung [Term] id: UBERON:0000171 name: respiration organ def: "Organ that functions in gaseous exchange between an organism and its environment. In plants, microorganisms, and many small animals, air or water makes direct contact with the organism's cells or tissue fluids, and the processes of diffusion supply the organism with dioxygen (O2) and remove carbon dioxide (CO2). In larger animals the efficiency of gaseous exchange is improved by specialized respiratory organs, such as lungs and gills, which are ventilated by breathing mechanisms." [GO:0007585] synonym: "breathing organ" EXACT [] synonym: "gas exchange organ" RELATED [] synonym: "respiratory organ" EXACT [] is_a: UBERON:0000062 ! organ intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0000172 name: vomit def: "Vomit is a bodily fluid consisting of the expulsed contents of the stomach of an organism disgorged through the mouth or nose." [ENVO:00000338] xref: ENVO:00000338 xref: OpenCyc:Mx4rvViQTJwpEbGdrcN5Y29ycA is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000173 name: amniotic fluid def: "Amniotic fluid is a bodily fluid consisting of watery liquid surrounding and cushioning a growing fetus within the amnion. It allows the fetus to move freely without the walls of the uterus being too tight against its body. Buoyancy is also provided." [ENVO:02000021] xref: BTO:0000068 xref: ENVO:02000021 xref: HOG:0001267 xref: MA:0002893 xref: ncithesaurus:Amniotic_Fluid is_a: UBERON:0000463 ! portion of organism substance relationship: surrounds UBERON:0000922 ! embryo [Term] id: UBERON:0000174 name: excreta alt_id: UBERON:0000324 alt_id: UBERON:BTO_0000491-FMA_9674 def: "Excreta are bodily fluids consisting of waste matter, such as sweat or feces, discharged from the body." [ENVO:02000022] synonym: "excretion" EXACT [] xref: BTO:0000491 xref: ENVO:02000022 xref: FMA:9674 xref: galen:Excretion is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000175 name: pleural effusion def: "Pleural effusion is a bodily fluid that is produced in exess and accumulates in the pleural cavity, the fluid-filled space that surrounds the lungs. Excessive amounts of such fluid can impair breathing by limiting the expansion of the lungs during inhalation." [ENVO:02000033] xref: ENVO:02000033 xref: ncithesaurus:Pleural_Effusion xref: OpenCyc:Mx4rLaTGCK2TEduAAAAOpmP6tw is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000176 name: oronasal secretion def: "Oronasal secretion is a bodily fluid secreted from the body via the mouth or nose." [ENVO:02000035] xref: ENVO:02000035 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000177 name: pus def: "Pus is a bodily fluid consisting of a whitish-yellow or yellow substance produced during inflammatory responses of the body that can be found in regions of pyogenic bacterial infections. Pus is produced from the dead and living cells which travel into the intercellular spaces around the affected cells." [ENVO:02000038] xref: ENVO:02000038 xref: ncithesaurus:Pus xref: OpenCyc:Mx4rvVjG6ZwpEbGdrcN5Y29ycA is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000178 name: blood def: "Circulating body substance which consists of blood plasma and hemoglobin-carrying red blood cells. Excludes blood analogues (see UBERON:0000179 haemolymphatic fluid)." [FMA:9670, Wikipedia:Blood] subset: uberon_slim synonym: "blood" EXACT [] synonym: "portion of blood" EXACT [] xref: BTO:0000089 xref: EFO:0000296 xref: ENVO:02000027 xref: FMA:9670 xref: galen:Blood xref: HOG:0000224 xref: MA:0000059 xref: MIAA:0000315 xref: ncithesaurus:Blood xref: OpenCyc:Mx4rvVjI8JwpEbGdrcN5Y29ycA xref: TAO:0000007 xref: XAO:0000124 xref: ZFA:0000007 is_a: UBERON:0000179 ! haemolymphatic fluid relationship: part_of UBERON:0002390 ! hematopoietic system [Term] id: UBERON:0000179 name: haemolymphatic fluid def: "Circulating fluid that is part of the hemolymphoid system. Blood, lymph, interstitial fluid or its analogs." [] synonym: "blood or blood analog" RELATED [] is_a: UBERON:0000463 ! portion of organism substance intersection_of: UBERON:0000463 ! portion of organism substance intersection_of: part_of UBERON:0002390 ! hematopoietic system created_by: cjm creation_date: 2009-04-08T04:38:19Z [Term] id: UBERON:0000200 name: gyrus def: "A ridge on the cerebral cortex. It is generally surrounded by one or more sulci." [Wikipedia:Gyrus] is_a: UBERON:0000064 ! organ part created_by: cjm creation_date: 2009-04-09T07:21:39Z [Term] id: UBERON:0000201 name: endothelial blood brain barrier def: "A blood brain barrier that is composed of endothelial cells." [UBERON:cjm] is_a: UBERON:0000120 ! blood brain barrier created_by: cjm creation_date: 2009-04-10T08:15:44Z [Term] id: UBERON:0000202 name: glial blood brain barrier def: "A blood brain barrier composed of glial cells." [UBERON:cjm] xref: FBbt:00007091 is_a: UBERON:0000120 ! blood brain barrier created_by: cjm creation_date: 2009-04-10T08:42:24Z [Term] id: UBERON:0000203 name: pallium def: "Roof of the telencephalon. In humans the cerebrum has three parts: the archipallium, the paleopallium and the neopallium. The developing telencephalon or forebrain is divided into pallium and subpallium. In amphibians, the cerebrum includes archipallium, paleopallium and some of the basal nuclei. Reptiles first developed a neopallium, which continued to develop in the brains of more recent species to become the neocortex of humans and Old World monkeys. In fish, the archipallium is the largest part of the cerebrum. Some researchers suggest the early archipallium gave rise to the human hippocampus." [GO:0021543, Wikipedia:Pallium_(neuroanatomy)] xref: ZFA:0007007 relationship: part_of UBERON:0001893 ! telencephalon created_by: cjm creation_date: 2009-04-18T12:03:09Z [Term] id: UBERON:0000204 name: subpallium def: "Base region of the telencephalon." [GO:0021544] synonym: "ventral telencephalon" EXACT [ZFA:0000304] xref: BTO:0003401 xref: ZFA:0000304 relationship: part_of UBERON:0001893 ! telencephalon created_by: cjm creation_date: 2009-04-18T12:12:27Z [Term] id: UBERON:0000205 name: echinoderm gill def: "Respiration in the Echinodermata (includes starfish and sea urchins) is carried out using a very primitive version of gills called papulli. These are thin protuberances on the surface of the body containing diverticula of the water vascular system." [] is_a: UBERON:0002535 ! gill created_by: cjm creation_date: 2009-04-18T01:13:57Z [Term] id: UBERON:0000206 name: pharyngeal gill def: "Gills of vertebrates are developed in the walls of the pharynx along a series of gill slits opening to the exterior. In fish, the gills are located on both sides of the pharynx. Gills are made of filaments which help increase surface area for oxygen exchange. In bony fish, the gills are covered by a bony cover called an operculum. When a fish breathes, it opens its mouth at regular times and draws in a mouthful of water. It then draws the sides of its throat together, forcing the water through the gill openings. The water passes over the gills on the outside. Valves inside the mouth keep the water from escaping through the mouth again. The operculum can be very important in adjusting the pressure of water inside of the pharynx to allow proper ventilation of the gills. Lampreys and sharks lack an operculum, they have multiple gill openings. Also, they must use different methods to force water over the gills. In sharks and rays, this ventilation of the gills is achieved either by the use of spiracles or ram ventilation (ventilation by constantly swimming). Although some animals use this method it is much better for animals to use a spiracle because they are less susceptible to injury." [Wikipedia:Gill#Vertebrate_gills] is_a: UBERON:0002535 ! gill relationship: adjacent_to UBERON:0001042 ! pharynx created_by: cjm creation_date: 2009-04-18T01:18:17Z [Term] id: UBERON:0000207 name: acellular lens def: "A chitinous extracellular secretion of the four underlying cone cells and the pigment cells." [GO:0048058] synonym: "compound eye corneal lens" EXACT [GO:0048058] synonym: "invertebrate lens" RELATED [] xref: FBbt:00004199 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0000965 ! lens created_by: cjm creation_date: 2009-04-18T01:35:32Z [Term] id: UBERON:0000208 name: cellular lens synonym: "vertebrate lens" RELATED [] is_a: UBERON:0000965 ! lens created_by: cjm creation_date: 2009-04-18T01:37:39Z [Term] id: UBERON:0000209 name: tetrapod frontal bone alt_id: UBERON:FMA_9613-MA_0001469-ZFA_0000486 def: "In humans: A bone resembling a cockleshell in two portions the squama frontalis, corresponding with the region of the forehead, and an orbital or horizontal portion, the pars orbitalis, which enters into the formation of the roofs of the orbital and nasal cavities. In teleost fish, where it is called the parietal bone: Paired dermal bone that covers the hind part of the cranium, overlapping the dorsal edge of the sphenotic, pterotic, epiotic and the anterior edge of the supraoccipital. The parietal are overlapped anteriorly by the frontal." [Wikipedia:Frontal_bone, ZFA:0000486] comment: The frontal bone in teleost fish is the homolog of the parietal bone in vertebrates synonym: "frontal bone" NARROW [FMA:52734] synonym: "parietal bone" NARROW [TAO:0000486] synonym: "post parietal" RELATED [ZFA:0000486] synonym: "teleost parietal bone" EXACT [TAO:0000486] xref: FMA:52734 xref: GAID:226 xref: MA:0001466 xref: TAO:0000486 xref: ZFA:0000486 is_a: UBERON:0002514 ! intramembranous bone relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0000210 name: tetrapod parietal bone alt_id: UBERON:FMA_52734-MA_0001466-ZFA_0000514 def: "In humans: bone forming side and roof of cranium. Each bone is irregularly quadrilateral in form, and has two surfaces, four borders, and four angles. In teleost fish, where it is called the frontal bone: Large elongated paired dermal bones that roof the cranium and bear part of the supraorbital canal. The frontal bones cover the upper edge of the lateral ethmoid, orbitosphenoid and pterosphenoids and overlaps the parietal bone posteriorly." [Wikipedia:Parietal_bone, ZFA:0000514] comment: This class was created automatically from a combination of ontologies synonym: "frontal bone" NARROW [TAO:0000514] synonym: "parietal bone" NARROW [FMA:9613] synonym: "teleost frontal bone" NARROW [TAO:0000514] xref: FMA:9613 xref: GAID:229 xref: MA:0001469 xref: TAO:0000514 xref: ZFA:0000514 is_a: UBERON:0002514 ! intramembranous bone relationship: part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0000211 name: ligament def: "Short band of tough fibrous dense regular connective tissue composed mainly of long, stringy collagen fibers. Ligaments connect bones to other bones to form a joint." [Wikipedia:Ligament] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "articular ligament" EXACT [Wikipedia:Ligament] synonym: "fibrous ligament" EXACT [Wikipedia:Ligament] synonym: "true ligament" EXACT [Wikipedia:Ligament] xref: EFO:0001966 xref: FMA:21496 xref: GAID:118 xref: galen:Ligament xref: HOG:0001272 xref: MA:0000113 xref: ncithesaurus:Ligament xref: OpenCyc:Mx4rvVjqpZwpEbGdrcN5Y29ycA xref: TAO:0001682 xref: ZFA:0001675 is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0002204 ! musculoskeletal system [Term] id: UBERON:0000212 name: toilet claw def: "specialized claw or nail on the foot of certain primates, used for personal grooming." [Wikipedia:Toilet-claw] is_a: UBERON:0001705 ! nail created_by: cjm creation_date: 2009-05-19T08:19:58Z [Term] id: UBERON:0000301 name: amniotic cavity alt_id: UBERON:BTO_0000025-FMA_63941 xref: BTO:0000025 xref: FMA:63941 xref: HOG:0000855 xref: ncithesaurus:Amniotic_Cavity is_a: UBERON:0000464 ! anatomical space relationship: has_part UBERON:0000173 ! amniotic fluid [Term] id: UBERON:0000303 name: adductor longus alt_id: UBERON:BTO_0000029-FMA_22441 xref: BTO:0000029 xref: FMA:22441 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0000304 name: tendon sheath alt_id: UBERON:BTO_0000051-FMA_76715 def: "A layer of membrane around a tendon. It has 2 layers: synovial sheath + fibrous tendon sheath" [Wikipedia:Tendon_sheath] comment: TODO: add layer relations xref: BTO:0000051 xref: FMA:76715 is_a: UBERON:0000479 ! portion of tissue relationship: has_part UBERON:0002018 ! synovial membrane relationship: surrounds UBERON:0000043 ! tendon [Term] id: UBERON:0000305 name: amnion alt_id: UBERON:BTO_0000065-FMA_80223 def: "A membrane building the amniotic sac that surrounds and protects an embryo. It is developed in reptiles, birds, and mammals, which are hence called “Amniota”; but not in amphibians and fish (Ichthyopsida), which are consequently termed “Anamniota”. The primary function of this is the protection of the embryo for its development. It stems from parts of the mesoderm on the outer side and the ectoderm on the inner side[WP]." [Wikipedia:Amnion] xref: BTO:0000065 xref: FMA:80223 xref: HOG:0000721 xref: ncithesaurus:Amnion is_a: UBERON:0000478 ! extraembryonic structure relationship: surrounds UBERON:0000922 ! embryo [Term] id: UBERON:0000307 name: blastula alt_id: UBERON:BTO_0000128-FMA_83041 def: "An early stage of embryonic development in animals. It is produced by cleavage of a fertilized ovum and consists of a spherical layer of around 128 cells surrounding a central fluid-filled cavity called the blastocoel. The blastula follows the morula and precedes the gastrula in the developmental sequence." [Wikipedia:Blastula] comment: TODO - check relationship with epiblast synonym: "blastosphere" RELATED [Wikipedia:Blastula] synonym: "Blastula" EXACT [FMA:83041] xref: BTO:0000128 xref: FMA:83041 xref: OGEM:000006 xref: OGES:000003 xref: OGES:000016 xref: OGES:000021 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000309 name: body wall alt_id: UBERON:BTO_0000139-FMA_10427 synonym: "Trunk wall" EXACT [FMA:10427] synonym: "Wall of trunk" EXACT [FMA:10427] xref: BTO:0000139 xref: FMA:10427 xref: galen:BodyWall is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0000310 name: breast alt_id: UBERON:BTO_0000149-FMA_9601 synonym: "mammary part of chest" EXACT [FMA:9601] synonym: "mammary region" EXACT [FMA:9601] xref: BTO:0000149 xref: FMA:9601 xref: galen:Breast xref: ncithesaurus:Breast is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0001443 ! chest [Term] id: UBERON:0000311 name: extensor alt_id: UBERON:BTO_0000151-FMA_74561 xref: BTO:0000151 xref: FMA:74561 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000312 name: cambium alt_id: UBERON:BTO_0000170-FMA_234358 synonym: "Cambial layer" EXACT [FMA:234358] synonym: "Cambium" EXACT [FMA:234358] synonym: "Cambium layer of periosteum" EXACT [FMA:234358] synonym: "Inner cambial layer of periosteum" EXACT [FMA:234358] xref: BTO:0000170 xref: EFO:0001016 xref: FMA:234358 is_a: UBERON:0000064 ! organ part relationship: constitutional_part_of UBERON:0002515 ! periosteum [Term] id: UBERON:0000313 name: tibial cartilage alt_id: UBERON:BTO_0000207-FMA_33923 synonym: "Tibial cartilage" EXACT [FMA:33923] xref: BTO:0000207 xref: FMA:33923 is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0000314 name: cecum mucosa alt_id: UBERON:BTO_0000213-FMA_14998 synonym: "Cecal mucosa" EXACT [FMA:14998] synonym: "Cecum mucosa" EXACT [FMA:14998] xref: BTO:0000213 xref: FMA:14998 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000317 ! implied link automatically realized ! colonic mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001153 ! cecum [Term] id: UBERON:0000315 name: subarachnoid space alt_id: UBERON:BTO_0000230-FMA_83716 xref: BTO:0000230 xref: FMA:83716 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0000316 name: cervical mucus alt_id: UBERON:BTO_0000242-FMA_83689 def: "Thick acidic mucus that blocks the cervical os after mestruation[WP]. This 'infertile' mucus blocks spermatozoa from entering the uterus." [Wikipedia:Cervix#Cervical_mucus] xref: BTO:0000242 xref: FMA:83689 is_a: UBERON:0000912 ! mucus [Term] id: UBERON:0000317 name: colonic mucosa alt_id: UBERON:0003347 alt_id: UBERON:BTO_0000271-FMA_14984 synonym: "colon mucosa" EXACT [FMA:14984] synonym: "colonic mucous membrane" EXACT [FMA:14984] synonym: "mucosa of colon" EXACT [FMA:14984] xref: BTO:0000271 xref: EMAPA:27375 xref: FMA:14984 is_a: UBERON:0000064 ! organ part is_a: UBERON:0001207 ! implied link automatically realized ! mucosa of large intestine intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001155 ! colon [Term] id: UBERON:0000319 name: cytotrophoblast alt_id: UBERON:BTO_0000322-FMA_83039 synonym: "Cellular trophoblast" EXACT [FMA:83039] synonym: "Cytotrophoblastic cell" EXACT [FMA:83039] xref: BTO:0000322 xref: FMA:83039 xref: ncithesaurus:Cytotrophoblast is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000320 name: duodenal mucosa alt_id: UBERON:BTO_0000367-FMA_14942 synonym: "Doudenal mucosa" EXACT [FMA:14942] synonym: "Duodenal mucosa" EXACT [FMA:14942] synonym: "Duodenal mucous membrane" EXACT [FMA:14942] xref: BTO:0000367 xref: FMA:14942 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000322 name: cerebral lobe alt_id: UBERON:BTO_0000445-FMA_77800 synonym: "Cerebral lobes" EXACT [FMA:77800] synonym: "Cerebral lobes set" EXACT [FMA:77800] xref: BTO:0000445 xref: FMA:77800 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000323 name: fetus alt_id: UBERON:BTO_0000449-FMA_63919 comment: TODO - check fetus/embryo. WP: An embryo (irregularly from Greek: ἔμβρυον, plural ἔμβρυα, lit. "that which grows," from en- "in" + bryein "to swell, be full"; the proper Latinate form would be embryum) is a multicellular diploid eukaryote in its earliest stage of development, from the time of first cell division until birth, hatching, or germination. In humans, it is called an embryo until about eight weeks after fertilization (i.e. ten weeks LMP), and from then it is instead called a fetus. xref: BTO:0000449 xref: EFO:0001323 xref: EV:0300011 xref: FMA:63919 xref: ncithesaurus:Fetus xref: OGES:000023 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000325 name: gastric gland alt_id: UBERON:BTO_0000503-FMA_14919 xref: BTO:0000503 xref: FMA:14919 is_a: UBERON:0002530 ! gland [Term] id: UBERON:0000326 name: pancreatic juice alt_id: UBERON:BTO_0000504-FMA_62973 def: "Pancreatic juice is slightly alkaline and contains numerous enzymes and inactive enzyme precursors including alpha-amylase, chymotrypsinogen, lipase, procarboxypeptidase, proelastase, prophospholipase A2, ribonuclease, and trypsinogen. Its high concentration of bicarbonate ions helps to neutralize the acid from the stomach." [GO:0030157] xref: BTO:0000504 xref: FMA:62973 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000328 name: gut wall alt_id: UBERON:BTO_0000547-FMA_45653 synonym: "Gut wall" EXACT [FMA:45653] xref: BTO:0000547 xref: FMA:45653 is_a: UBERON:0000477 ! anatomical cluster relationship: constitutional_part_of UBERON:0001555 ! gut relationship: systemic_part_of UBERON:0001555 ! gut [Term] id: UBERON:0000329 name: hair root alt_id: UBERON:BTO_0000555-FMA_70730 def: "The root of the hair ends in an enlargement, the hair bulb, which is whiter in color and softer in texture than the shaft, and is lodged in a follicular involution of the epidermis called the hair follicle. [Wikipedia]." [Wikipedia:Hair_root] synonym: "Root of hair" EXACT [FMA:70730] xref: BTO:0000555 xref: FMA:70730 xref: ncithesaurus:Hair_Root is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001037 ! hair [Term] id: UBERON:0000331 name: ileal mucosa alt_id: UBERON:BTO_0000619-FMA_14956 synonym: "Ileal mucosa" EXACT [FMA:14956] synonym: "Ileal mucous membrane" EXACT [FMA:14956] synonym: "Ileum mucosa" EXACT [FMA:14956] xref: BTO:0000619 xref: FMA:14956 is_a: UBERON:0000064 ! organ part is_a: UBERON:0001204 ! implied link automatically realized ! mucosa of small intestine intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002116 ! ileum [Term] id: UBERON:0000332 name: yellow bone marrow alt_id: UBERON:BTO_0000635-FMA_74596 xref: BTO:0000635 xref: FMA:74596 is_a: UBERON:0002371 ! bone marrow [Term] id: UBERON:0000333 name: intestinal gland alt_id: UBERON:BTO_0000640-FMA_15052 comment: TODO check UBERON:0001983 synonym: "Glandula intestinalis" EXACT [FMA:15052] xref: BTO:0000640 xref: FMA:15052 is_a: UBERON:0002530 ! gland is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001242 ! intestinal mucosa relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0000341 name: throat alt_id: UBERON:BTO_0000828-FMA_228738 xref: BTO:0000828 xref: FMA:228738 xref: ncithesaurus:Throat is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0000344 name: mucosa alt_id: UBERON:BTO_0000886-FMA_85355 def: "A lining of mostly endodermal origin, covered in epithelium, which is involved in absorption and secretion. They line various body cavities that are exposed to the external environment and internal organs. It is at several places continuous with skin: at the nostrils, the lips, the ears, the genital area, and the anus. The sticky, thick fluid secreted by the mucous membranes and gland is termed mucus. The term mucous membrane refers to where they are found in the body and not every mucous membrane secretes mucus[WP]" [Wikipedia:Mucous_membrane] comment: TODO - check - mucosa vs region of mucosa synonym: "Mucosa of organ" EXACT [FMA:85355] synonym: "Mucous membrane" EXACT [FMA:85355] synonym: "Organ mucosa" EXACT [FMA:85355] xref: BTO:0000886 xref: FMA:85355 xref: ncithesaurus:Mucosa is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000345 name: myelin alt_id: UBERON:BTO_0000894-FMA_62977 xref: BTO:0000894 xref: FMA:62977 xref: ncithesaurus:Myelin is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000346 name: myelin membrane alt_id: UBERON:BTO_0000895-FMA_73417 comment: BTO has def The multilamellar myelin membrane is a specisalised lipid-rich domain of the glial cell plasma membrane. FMA has primary term name Myelinated plasma membrane of Schwann cell synonym: "Myelin membrane" EXACT [FMA:73417] xref: BTO:0000895 xref: FMA:73417 is_a: UBERON:0000470 ! cell part relationship: has_part UBERON:0000345 ! myelin [Term] id: UBERON:0000347 name: myelin sheath alt_id: UBERON:BTO_0000900-FMA_62983 xref: BTO:0000900 xref: FMA:62983 xref: GO:0043209 xref: ncithesaurus:Myelin_Sheath is_a: UBERON:0000470 ! cell part relationship: has_part UBERON:0000345 ! myelin [Term] id: UBERON:0000348 name: ophthalmic nerve alt_id: UBERON:BTO_0000926-FMA_52621 synonym: "First division of fifth cranial nerve" EXACT [FMA:52621] synonym: "First division of trigeminal nerve" EXACT [FMA:52621] synonym: "Nervus ophthalmicus (V1)" EXACT [FMA:52621] synonym: "Nervus ophthalmicus (Va)" EXACT [FMA:52621] synonym: "Ophthalmic division [V1]" EXACT [FMA:52621] synonym: "Ophthalmic division [Va]" EXACT [FMA:52621] synonym: "Ophthalmic division of fifth cranial nerve" EXACT [FMA:52621] synonym: "Ophthalmic division of trigeminal nerve (V1)" EXACT [FMA:52621] synonym: "Ophthalmic division of trigeminal nerve (Va)" EXACT [FMA:52621] synonym: "Ophthalmic nerve [V1]" EXACT [FMA:52621] synonym: "Ophthalmic nerve [Va]" EXACT [FMA:52621] xref: BTO:0000926 xref: FMA:52621 xref: ncithesaurus:Ophthalmic_Nerve is_a: UBERON:0000063 ! organ segment is_a: UBERON:0001021 ! nerve relationship: branch_of UBERON:0001645 ! trigeminal nerve [Term] id: UBERON:0000349 name: limbic system alt_id: UBERON:BTO_0000928-FMA_242000 def: "A set of midline structures surrounding the brainstem of the mammalian brain, originally described anatomically, e.g., hippocampal formation, amygdala, hypothalamus, cingulate cortex. Although the original designation was anatomical, the limbic system has come to be associated with the system in the brain subserving emotional functions. As such, it is very poorly defined and doesn't correspond closely to the anatomical meaning any longer. [BirnLex]. including the hippocampus, amygdala, anterior thalamic nuclei, and limbic cortex, which support a variety of functions including emotion, behavior, long term memory, and olfaction [Wikipedia]." [BIRNLEX:Limbic_system] comment: obsoletion recommended. The current part_of children were chosen as the intersection of what is stated in wikipedia and in the FMA. NIF: We are including Limbic System because it is still used by neuroscientists and others, but as a data annotation term, it is very poor because it is not a clearly defined entity. xref: BTO:0000928 xref: FMA:242000 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0000351 name: nuchal ligament alt_id: UBERON:BTO_0000952-FMA_13427 synonym: "Ligament of neck" EXACT [FMA:13427] synonym: "Nuchal ligament" EXACT [FMA:13427] xref: BTO:0000952 xref: FMA:13427 is_a: UBERON:0000062 ! organ [Term] id: UBERON:0000353 name: parenchyma alt_id: UBERON:BTO_0000999-FMA_45732 def: "functional part of an organ in the body. This is in contrast to the stroma, which refers to the structural tissue of organs, being exactly, connective tissues. Early in development the mammalian embryo has three distinct layers: ectoderm (external layer), endoderm (internal layer) and in between those two layers the middle layer or mesoderm. The parenchyma of most organs is of ectodermal (brain, skin) or endodermal origin (lungs, gastrointestinal tract, liver, pancreas). The parenchyma of a few organs (spleen, kidneys, heart) is of mesodermal origin. The stroma of all organs is of mesodermal origin[WP]." [Wikipedia:Parenchyma] xref: BTO:0000999 xref: FMA:45732 xref: ncithesaurus:Parenchyma is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000355 name: pharyngeal mucosa alt_id: UBERON:0003344 alt_id: UBERON:BTO_0001047-FMA_55031 synonym: "Mucous membrane of pharynx" EXACT [FMA:55031] synonym: "Pharyngeal mucosa" EXACT [FMA:55031] xref: BTO:0001047 xref: EMAPA:26957 xref: EMAPA:26965 xref: FMA:55031 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000344 ! implied link automatically realized ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001042 ! pharynx [Term] id: UBERON:0000358 name: blastocyst alt_id: UBERON:BTO_0001099-FMA_83041 def: "The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]." [GO:0001824] synonym: "Blastula" EXACT [FMA:83041] xref: BTO:0001099 xref: EFO:0000295 xref: FMA:83041 xref: ncithesaurus:Blastocyst xref: OGEM:000006 xref: OGES:000003 xref: OGES:000016 xref: OGES:000021 is_a: UBERON:0002050 ! embryonic structure relationship: has_part UBERON:0000087 ! inner cell mass [Term] id: UBERON:0000359 name: preputial gland alt_id: UBERON:BTO_0001111-FMA_71652 synonym: "Preputial glands" EXACT [FMA:71652] synonym: "Preputial glands set" EXACT [FMA:71652] xref: BTO:0001111 xref: FMA:71652 xref: ncithesaurus:Prepucial_Gland_MMHCC is_a: UBERON:0002530 ! gland [Term] id: UBERON:0000360 name: rectal gland alt_id: UBERON:BTO_0001157-FMA_15724 xref: BTO:0001157 xref: FMA:15724 is_a: UBERON:0002530 ! gland is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001052 ! rectum [Term] id: UBERON:0000361 name: red bone marrow alt_id: UBERON:BTO_0001160-FMA_74595 xref: BTO:0001160 xref: FMA:74595 is_a: UBERON:0002371 ! bone marrow [Term] id: UBERON:0000362 name: renal medulla alt_id: UBERON:BTO_0001167-FMA_86327 synonym: "Renal medullae" EXACT [FMA:86327] synonym: "Renal medullae set" EXACT [FMA:86327] xref: BTO:0001167 xref: FMA:86327 xref: ncithesaurus:Renal_Medulla is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000958 ! implied link automatically realized ! medulla intersection_of: UBERON:0000958 ! medulla intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0000363 name: reticuloendothelial system alt_id: UBERON:BTO_0001174-FMA_84189 synonym: "Reticuloendothelial system" EXACT [FMA:84189] xref: BTO:0001174 xref: FMA:84189 xref: ncithesaurus:Reticuloendothelial_System is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000364 name: rootlet alt_id: UBERON:BTO_0001192-FMA_76787 synonym: "Rootlets" EXACT [FMA:76787] synonym: "Rootlets set" EXACT [FMA:76787] xref: BTO:0001192 xref: FMA:76787 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000365 name: urothelium alt_id: UBERON:BTO_0001245-FMA_67695 synonym: "Uroepithelium" EXACT [FMA:67695] xref: BTO:0001245 xref: FMA:67695 xref: ncithesaurus:Urothelium is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0000366 name: flexor alt_id: UBERON:BTO_0001257-FMA_74559 xref: BTO:0001257 xref: FMA:74559 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000368 name: adductor brevis alt_id: UBERON:BTO_0001288-FMA_22442 synonym: "Musculus adductos brevis" EXACT [FMA:22442] xref: BTO:0001288 xref: FMA:22442 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0000369 name: corpus striatum alt_id: UBERON:BTO_0001311-FMA_77616 xref: BTO:0001311 xref: EFO:0000381 xref: FMA:77616 xref: HOG:0001175 xref: ncithesaurus:Corpus_Striatum is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000370 name: adductor magnus alt_id: UBERON:BTO_0001312-FMA_22443 xref: BTO:0001312 xref: FMA:22443 xref: galen:AdductorMagnus is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0000371 name: syncytiotrophoblast alt_id: UBERON:BTO_0001335-FMA_83040 synonym: "Syncytiotrophoblast" EXACT [FMA:83040] xref: BTO:0001335 xref: FMA:83040 xref: ncithesaurus:Syncytiotrophoblast is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000372 name: extensor digitorum brevis alt_id: UBERON:BTO_0001337-FMA_51140 xref: BTO:0001337 xref: FMA:51140 is_a: UBERON:0001498 ! muscle of foot is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0000373 name: tapetum of corpus callosum alt_id: UBERON:BTO_0001350-FMA_77208 def: "On either side of the corpus collosum, the fibers radiate in the white substance and pass to the various parts of the cerebral cortex; those curving forward from the genu into the frontal lobe constitute the forceps anterior, and those curving backward into the occipital lobe, the forceps posterior. Between these two parts is the main body of the fibers which constitute the tapetum and extend laterally on either side into the temporal lobe, and cover in the central part of the lateral ventricle. [Wikipedia via Greys]" [Wikipedia:Tapetum_of_corpus_callosum] comment: not to be confused with BTO:0001350 or GO:0048655-tapetal layer morphogenesis xref: FMA:77208 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0000374 name: thigh muscle alt_id: UBERON:BTO_0001367-FMA_22470 synonym: "Thigh muscle" EXACT [FMA:22470] xref: BTO:0001367 xref: FMA:22470 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0000375 name: mandibular nerve alt_id: UBERON:BTO_0001375-FMA_52996 synonym: "Inferior maxillary nerve" EXACT [FMA:52996] synonym: "Mandibular division [V3]" EXACT [FMA:52996] synonym: "Mandibular division [Vc]" EXACT [FMA:52996] synonym: "Mandibular division of fifth cranial nerve" EXACT [FMA:52996] synonym: "Mandibular division of trigeminal nerve [Vc; V3]" EXACT [FMA:52996] synonym: "Mandibular nerve [V3]" EXACT [FMA:52996] synonym: "Mandibular nerve [Vc]" EXACT [FMA:52996] synonym: "Nervus mandibularis [Vc; V3]" EXACT [FMA:52996] synonym: "Third division of fifth cranial nerve" EXACT [FMA:52996] synonym: "Third division of trigeminal nerve" EXACT [FMA:52996] xref: BTO:0001375 xref: FMA:52996 xref: ncithesaurus:Inferior_Maxillary_Nerve is_a: UBERON:0000063 ! organ segment is_a: UBERON:0001021 ! nerve relationship: branch_of UBERON:0001645 ! trigeminal nerve [Term] id: UBERON:0000376 name: upper leg alt_id: UBERON:BTO_0001376-FMA_24967 synonym: "Proximal segment of free lower limb" EXACT [FMA:24967] synonym: "stylopod of lower limb" EXACT [] synonym: "thigh" EXACT [] xref: BTO:0001376 xref: EFO:0001943 xref: FMA:24967 xref: MA:0000052 xref: ncithesaurus:Thigh is_a: UBERON:0002472 ! stylopod intersection_of: UBERON:0002472 ! stylopod intersection_of: part_of UBERON:0002103 ! hindlimb relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0000377 name: maxillary nerve alt_id: UBERON:BTO_0001378-FMA_52724 synonym: "Maxillary division [V2]" EXACT [FMA:52724] synonym: "Maxillary division [Vb]" EXACT [FMA:52724] synonym: "Maxillary division of fifth cranial nerve" EXACT [FMA:52724] synonym: "Maxillary division of trigeminal nerve (Vb; V2)" EXACT [FMA:52724] synonym: "Maxillary nerve [V2]" EXACT [FMA:52724] synonym: "Maxillary nerve [Vb]" EXACT [FMA:52724] synonym: "Nervus maxillaris (Vb; V2)" EXACT [FMA:52724] synonym: "Second division of fifth cranial nerve" EXACT [FMA:52724] synonym: "Second division of trigeminal nerve" EXACT [FMA:52724] xref: BTO:0001378 xref: FMA:52724 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0001021 ! nerve relationship: branch_of UBERON:0001645 ! trigeminal nerve [Term] id: UBERON:0000378 name: tongue muscle alt_id: UBERON:BTO_0001386-FMA_46689 synonym: "Tongue muscle" EXACT [FMA:46689] xref: BTO:0001386 xref: FMA:46689 xref: ncithesaurus:Tongue_Muscle is_a: UBERON:0002376 ! muscle of head is_a: UBERON:0003212 ! implied link automatically realized ! gustatory organ relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0000379 name: tracheal mucosa alt_id: UBERON:BTO_0001390-FMA_7471 synonym: "Mucous membrane of trachea" EXACT [FMA:7471] synonym: "Tracheal mucosa" EXACT [FMA:7471] synonym: "Tracheal mucous membrane" EXACT [FMA:7471] synonym: "Tunica mucosa (tracheae)" EXACT [FMA:7471] xref: BTO:0001390 xref: FMA:7471 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000344 ! implied link automatically realized ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001005 ! trachea [Term] id: UBERON:0000380 name: tuber alt_id: UBERON:BTO_0001400-FMA_75430 xref: BTO:0001400 xref: EFO:0001015 xref: FMA:75430 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000381 name: detrusor alt_id: UBERON:BTO_0001453-FMA_68018 xref: BTO:0001453 xref: FMA:68018 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000382 name: apocrine sweat gland alt_id: UBERON:BTO_0001458-FMA_59155 xref: BTO:0001458 xref: FMA:59155 xref: ncithesaurus:Apocrine_Sweat_Gland is_a: UBERON:0001820 ! sweat gland relationship: constitutional_part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0000383 name: muscular system alt_id: UBERON:BTO_0001485-FMA_72954 synonym: "Set of all muscles" EXACT [FMA:72954] synonym: "Set of muscles of body" EXACT [FMA:72954] xref: BTO:0001485 xref: EFO:0000801 xref: FMA:72954 is_a: UBERON:0001015 ! muscle system relationship: constitutional_part_of UBERON:0002204 ! musculoskeletal system relationship: systemic_part_of UBERON:0002204 ! musculoskeletal system [Term] id: UBERON:0000385 name: labial gland alt_id: UBERON:BTO_0001548-FMA_71613 synonym: "Labial glands" EXACT [FMA:71613] synonym: "Labial glands set" EXACT [FMA:71613] xref: BTO:0001548 xref: FMA:71613 xref: HAO:0000449 is_a: UBERON:0002530 ! gland [Term] id: UBERON:0000387 name: meniscus alt_id: UBERON:BTO_0001592-FMA_76690 def: "crescent-shaped fibrocartilaginous structure present in the knee, acromioclavicular, sternoclavicular, and temporomandibular joints[2] that, in contrast to articular disks, only partly divides a joint cavity.[3] A small meniscus also occurs in the radio-carpal joint." [Wikipedia:Meniscus_(anatomy)] synonym: "Meniscus" EXACT [FMA:76690] xref: BTO:0001592 xref: FMA:76690 xref: ncithesaurus:Meniscus is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000388 name: epiglottis alt_id: UBERON:BTO_0001628-FMA_55130 xref: BTO:0001628 xref: FMA:55130 xref: ncithesaurus:Epiglottis is_a: UBERON:0000477 ! anatomical cluster relationship: systemic_part_of UBERON:0001051 ! hypopharynx [Term] id: UBERON:0000389 name: lens cortex alt_id: UBERON:BTO_0001632-FMA_58970 synonym: "Lens cortex" EXACT [FMA:58970] xref: BTO:0001632 xref: FMA:58970 is_a: UBERON:0001851 ! cortex relationship: part_of UBERON:0000965 ! lens [Term] id: UBERON:0000390 name: lens nucleus alt_id: UBERON:BTO_0001633-FMA_58971 synonym: "Lens nucleus" EXACT [FMA:58971] xref: BTO:0001633 xref: FMA:58971 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000965 ! lens [Term] id: UBERON:0000391 name: leptomeninx alt_id: UBERON:BTO_0001634-FMA_231515 xref: BTO:0001634 xref: FMA:231515 is_a: UBERON:0002360 ! meninx [Term] id: UBERON:0000392 name: longissimus alt_id: UBERON:BTO_0001648-FMA_77178 xref: BTO:0001648 xref: FMA:77178 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0000395 name: cochlear ganglion alt_id: UBERON:BTO_0001688-FMA_53445 synonym: "Corti's ganglion" EXACT [FMA:53445] synonym: "Ganglion of Corti" EXACT [FMA:53445] synonym: "Spiral ganglion" EXACT [FMA:53445] xref: BTO:0001688 xref: FMA:53445 is_a: UBERON:0001714 ! ganglion of cranial nerve [Term] id: UBERON:0000396 name: vallate papilla alt_id: UBERON:BTO_0001705-FMA_71449 synonym: "Vallate papillae" EXACT [FMA:71449] synonym: "Vallate papillae set" EXACT [FMA:71449] xref: BTO:0001705 xref: FMA:71449 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000397 name: colonic epithelium alt_id: UBERON:BTO_0001709-FMA_17302 synonym: "Colon epithelium" EXACT [FMA:17302] synonym: "Colonic epithelium" EXACT [FMA:17302] xref: BTO:0001709 xref: FMA:17302 xref: ZFA:0005128 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0001278 ! implied link automatically realized ! epithelium of large intestine intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001155 ! colon [Term] id: UBERON:0000398 name: sternal cartilage alt_id: UBERON:BTO_0001721-FMA_32567 synonym: "Sternal cartilage" EXACT [FMA:32567] xref: BTO:0001721 xref: FMA:32567 is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0000399 name: jejunal mucosa alt_id: UBERON:0003349 alt_id: UBERON:BTO_0001742-FMA_14949 synonym: "jejunal mucous membrane" EXACT [FMA:14949] synonym: "jejunum mucosa" EXACT [FMA:14949] synonym: "mucosa of jejunum" EXACT [FMA:14949] xref: BTO:0001742 xref: EMAPA:27109 xref: EMAPA:27347 xref: FMA:14949 is_a: UBERON:0000064 ! organ part is_a: UBERON:0001204 ! implied link automatically realized ! mucosa of small intestine intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002115 ! jejunum [Term] id: UBERON:0000400 name: jejunal epithelium alt_id: UBERON:BTO_0001743-FMA_17232 xref: BTO:0001743 xref: FMA:17232 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0000401 name: mandibular ramus alt_id: UBERON:BTO_0001751-FMA_52828 synonym: "Mandibular ramus" EXACT [FMA:52828] xref: BTO:0001751 xref: FMA:52828 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000402 name: nasal vestibule alt_id: UBERON:BTO_0001761-FMA_59644 synonym: "Vestibular part of nasal cavity" EXACT [FMA:59644] xref: BTO:0001761 xref: FMA:59644 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0000403 name: scalp alt_id: UBERON:BTO_0001809-FMA_46494 xref: BTO:0001809 xref: FMA:46494 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0000407 name: sympathetic chain alt_id: UBERON:BTO_0001834-FMA_6258 synonym: "Sympathetic chain" EXACT [FMA:6258] xref: BTO:0001834 xref: FMA:6258 is_a: UBERON:0000062 ! organ relationship: systemic_part_of UBERON:0000013 ! sympathetic nervous system [Term] id: UBERON:0000408 name: vertebral ganglion alt_id: UBERON:BTO_0001835-FMA_6572 synonym: "Intermediate ganglion" EXACT [FMA:6572] xref: BTO:0001835 xref: FMA:6572 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0000409 name: serous gland alt_id: UBERON:BTO_0001837-FMA_62889 xref: BTO:0001837 xref: FMA:62889 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002365 ! exocrine gland [Term] id: UBERON:0000410 name: bronchial mucosa alt_id: UBERON:BTO_0001846-FMA_62652 synonym: "Bronchial mucosa" EXACT [FMA:62652] synonym: "Mucous membrane of bronchus" EXACT [FMA:62652] xref: BTO:0001846 xref: FMA:62652 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000344 ! implied link automatically realized ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0000411 name: visual cortex alt_id: UBERON:BTO_0001857-FMA_242644 def: "Area including V1 and extrastriate visual cortical areas such as V2, V3, V4, and V5." [Wikipedia:Visual_cortex] synonym: "V1" EXACT [Wikipedia:Visual_cortex] xref: BTO:0001857 xref: EFO:0000916 xref: FMA:242644 is_a: UBERON:0003208 [Term] id: UBERON:0000412 name: dermal papilla alt_id: UBERON:BTO_0001858-FMA_70737 synonym: "Follicular papilla" EXACT [FMA:70737] xref: BTO:0001858 xref: FMA:70737 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000414 name: mucous gland alt_id: UBERON:BTO_0001979-FMA_62888 xref: BTO:0001979 xref: FMA:62888 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002365 ! exocrine gland [Term] id: UBERON:0000415 name: artery wall alt_id: UBERON:BTO_0002009-FMA_14155 synonym: "Arterial wall" EXACT [FMA:14155] xref: BTO:0002009 xref: FMA:14155 xref: galen:ArterialWall is_a: UBERON:0000060 ! implied link automatically realized ! anatomical wall is_a: UBERON:0000064 ! organ part intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001637 ! artery [Term] id: UBERON:0000416 name: subdural space alt_id: UBERON:BTO_0002082-FMA_83803 xref: BTO:0002082 xref: FMA:83803 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0000417 name: primitive endoderm alt_id: UBERON:BTO_0002123-FMA_85520 xref: BTO:0002123 xref: FMA:85520 is_a: UBERON:0000925 ! endoderm is_a: UBERON:0003256 ! implied link automatically realized ! endoderm of embryo [Term] id: UBERON:0000418 name: tubercle alt_id: UBERON:BTO_0002173-FMA_75429 is_obsolete: true [Term] id: UBERON:0000420 name: myoepithelium alt_id: UBERON:BTO_0002308-FMA_67805 synonym: "Myoepithelium" EXACT [FMA:67805] xref: BTO:0002308 xref: FMA:67805 is_a: UBERON:0000488 ! atypical epithelium [Term] id: UBERON:0000423 name: eccrine sweat gland alt_id: UBERON:BTO_0002323-FMA_59154 synonym: "Eccrine gland" EXACT [FMA:59154] xref: BTO:0002323 xref: FMA:59154 xref: ncithesaurus:Eccrine_Sweat_Gland is_a: UBERON:0001820 ! sweat gland relationship: constitutional_part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0000424 name: gastric pit alt_id: UBERON:0000425 alt_id: UBERON:BTO_0002364-FMA_62947 synonym: "Gastric pit" EXACT [FMA:62947] xref: BTO:0002364 xref: FMA:62947 xref: ncithesaurus:Gastric_Pit is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0000426 name: extravillous trophoblast alt_id: UBERON:BTO_0002366-FMA_86561 synonym: "Extravillous trophoblast" EXACT [FMA:86561] xref: BTO:0002366 xref: FMA:86561 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000427 name: cytotrophoblastic cell alt_id: UBERON:BTO_0002367-FMA_83039 synonym: "Cellular trophoblast" EXACT [FMA:83039] synonym: "Cytotrophoblastic cell" EXACT [FMA:83039] xref: BTO:0002367 xref: FMA:83039 xref: ncithesaurus:Cytotrophoblastic_Cell is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000428 name: prostate epithelium alt_id: UBERON:0002452 alt_id: UBERON:BTO_0002397-FMA_66812 comment: TODO - check 2 FMA IDs synonym: "prostate gland epithelium" EXACT [] synonym: "Prostatic gland epithelium" EXACT [FMA:79643] synonym: "prostatic gland epithelium" EXACT [] xref: BTO:0002397 xref: FMA:66812 xref: FMA:79643 xref: MA:0001737 xref: ncithesaurus:Prostatic_Epithelium is_a: UBERON:0000485 ! simple columnar epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002367 ! prostate [Term] id: UBERON:0000429 name: enteric plexus alt_id: UBERON:BTO_0002437-FMA_77597 synonym: "Enteric nerve plexus" EXACT [FMA:77597] synonym: "Sympathetic enteric nerve plexus" EXACT [FMA:77597] xref: BTO:0002437 xref: FMA:77597 is_a: UBERON:0001816 ! autonomic nerve plexus [Term] id: UBERON:0000430 name: ventral intermediate nucleus of thalamus alt_id: UBERON:BTO_0002469-FMA_84347 xref: BTO:0002469 xref: FMA:84347 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0000431 name: ventral medial complex of thalamus alt_id: UBERON:BTO_0002470-FMA_77795 synonym: "Ventral medial complex of thalamus" EXACT [FMA:77795] synonym: "Ventral medial nuclei of thalamus" EXACT [FMA:77795] xref: BTO:0002470 xref: FMA:77795 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000432 name: endopeduncular nucleus alt_id: UBERON:BTO_0002475-FMA_77691 xref: BTO:0002475 xref: FMA:77691 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0000433 name: posterior paraventricular nucleus of thalamus alt_id: UBERON:BTO_0002477-FMA_76961 synonym: "Posterior paraventricular nucleus of thalamus" EXACT [FMA:76961] xref: BTO:0002477 xref: FMA:76961 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0000434 name: anterior paraventricular nucleus of thalamus alt_id: UBERON:BTO_0002478-FMA_76962 synonym: "Anterior paraventricular nucleus of thalamus" EXACT [FMA:76962] xref: BTO:0002478 xref: FMA:76962 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0000435 name: lateral tuberal nucleus alt_id: UBERON:BTO_0002481-FMA_62336 synonym: "Lateral tuberal hypothalamic nuclei" EXACT [FMA:62336] synonym: "Lateral tuberal nuclei" EXACT [FMA:62336] xref: BTO:0002481 xref: FMA:62336 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0002430 ! lateral hypothalamic area [Term] id: UBERON:0000437 name: arachnoid barrier layer alt_id: UBERON:BTO_0002498-FMA_231559 xref: BTO:0002498 xref: FMA:231559 is_a: UBERON:0000064 ! organ part relationship: constitutional_part_of UBERON:0002362 ! arachnoid mater [Term] id: UBERON:0000438 name: set of arachnoid trabecula alt_id: UBERON:BTO_0002500-FMA_77761 synonym: "Arachnoid trabeculae set" EXACT [FMA:77761] xref: BTO:0002500 xref: FMA:77761 is_a: UBERON:0000061 ! anatomical structure relationship: has_part UBERON:0000439 ! arachnoid trabecula [Term] id: UBERON:0000439 name: arachnoid trabecula alt_id: UBERON:BTO_0002500-FMA_83979 def: "a small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue." [GO:0060343] xref: BTO:0002500 xref: FMA:83979 is_a: UBERON:0000440 ! trabecula relationship: constitutional_part_of UBERON:0002362 ! arachnoid mater [Term] id: UBERON:0000440 name: trabecula alt_id: UBERON:BTO_0002501-FMA_85273 def: "A small, often microscopic, tissue element in the form of a small beam, strut or rod, generally having a mechanical function, and usually but not necessarily composed of dense collagenous tissue. On histological section, a trabecula can look like a septum, but in three dimensions they are topologically distinct, with trabeculae being roughly rod or pillar-shaped and septa being sheet-like.. Trabeculae are usually composed of dense fibrous tissue, i.e. mainly of collagen, and in most cases provide mechanical strengthening or stiffening to a soft solid organ, such as the spleen. They can be composed of other materials, such as bone or muscle[WP]." [Wikipedia:Trabecula] xref: BTO:0002501 xref: FMA:85273 xref: ZFA:0001321 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000442 name: right testicular vein alt_id: UBERON:BTO_0002679-FMA_14341 synonym: "Vena testicularis (adrenalis) dextra" EXACT [FMA:14341] xref: BTO:0002679 xref: FMA:14341 is_a: UBERON:0001144 ! testicular vein [Term] id: UBERON:0000443 name: left testicular vein alt_id: UBERON:BTO_0002680-FMA_14345 xref: BTO:0002680 xref: FMA:14345 is_a: UBERON:0001144 ! testicular vein [Term] id: UBERON:0000444 name: lymphoid follicle alt_id: UBERON:BTO_0002684-FMA_55222 synonym: "Lymphoid follicle" EXACT [FMA:55222] synonym: "Lymphoid nodule" EXACT [FMA:55222] xref: BTO:0002684 xref: FMA:55222 xref: ncithesaurus:Lymphoid_Follicle is_a: UBERON:0001744 ! lymphoid tissue [Term] id: UBERON:0000445 name: habenular trigone alt_id: UBERON:BTO_0002700-FMA_74868 xref: BTO:0002700 xref: FMA:74868 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0000446 name: septum of telencephalon alt_id: UBERON:BTO_0002705-FMA_61842 def: "Subdivision of the telencephalon on the midline between the lateral ventricles which contains the septum pellucidum and the septal nuclei[FMA]." [FMA:61842] synonym: "septal area" EXACT [FMA:61842] synonym: "septum (NN)" EXACT [FMA:61842] synonym: "telencephalon septum" EXACT [FMA:61842] xref: BTO:0002705 xref: FMA:61842 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0000449 name: decidual cell alt_id: UBERON:BTO_0002770-FMA_86480 xref: BTO:0002770 xref: FMA:86480 xref: ncithesaurus:Decidual_Cell is_a: UBERON:0000478 ! extraembryonic structure [Term] id: UBERON:0000450 name: corpus albicans alt_id: UBERON:BTO_0002784-FMA_18620 synonym: "Corpus albicans of ovary" EXACT [FMA:18620] xref: BTO:0002784 xref: FMA:18620 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000451 name: prefrontal cortex alt_id: UBERON:BTO_0002807-FMA_224850 synonym: "Prefrontal association cortex" EXACT [FMA:224850] xref: BTO:0002807 xref: EFO:0001384 xref: FMA:224850 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000452 name: gubernaculum testis alt_id: UBERON:BTO_0002813-FMA_20421 xref: BTO:0002813 xref: FMA:20421 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000453 name: decidua basalis alt_id: UBERON:BTO_0002819-FMA_86477 xref: BTO:0002819 xref: EFO:0001918 xref: FMA:86477 xref: MA:0002905 xref: ncithesaurus:Decidua_Basalis is_a: UBERON:0000478 ! extraembryonic structure [Term] id: UBERON:0000454 name: cerebral subcortex alt_id: UBERON:BTO_0002858-FMA_242188 synonym: "Cerebral medulla" EXACT [FMA:242188] xref: BTO:0002858 xref: FMA:242188 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0000456 name: secretion alt_id: UBERON:BTO_0002979-FMA_9675 xref: BTO:0002979 xref: FMA:9675 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000457 name: cavernous artery alt_id: UBERON:BTO_0002996-FMA_70527 synonym: "Cavernous branch of cavernous part of internal carotid artery" EXACT [FMA:70527] xref: BTO:0002996 xref: FMA:70527 is_a: UBERON:0000063 ! organ segment is_a: UBERON:0001637 ! artery [Term] id: UBERON:0000458 name: endocervix alt_id: UBERON:BTO_0003002-FMA_86485 xref: BTO:0003002 xref: FMA:86485 xref: ncithesaurus:Endocervix is_a: UBERON:0000063 ! organ segment [Term] id: UBERON:0000459 name: uterine wall alt_id: UBERON:BTO_0003083-FMA_17560 synonym: "Uterine wall" EXACT [FMA:17560] xref: BTO:0003083 xref: FMA:17560 is_a: UBERON:0000060 ! implied link automatically realized ! anatomical wall is_a: UBERON:0000064 ! organ part intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000995 ! uterus relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0000460 name: major vestibular gland alt_id: UBERON:BTO_0003115-FMA_9598 def: "Gland found in pairs located slightly below and to the left and right of the opening of the vagina in women. Bartholin's glands are homologous to bulbourethral glands in males. However, while Bartholin's glands are located in the superficial perineal pouch, bulbourethral glands are located in the deep perineal pouch. They secrete mucus to provide vaginal lubrication." [Wikipedia:Bartholin's_glands] synonym: "Bartholin's gland" EXACT [FMA:9598] synonym: "Duverney's gland" EXACT [FMA:9598] synonym: "Major vestibular gland" EXACT [FMA:9598] synonym: "Tiedemann's gland" EXACT [FMA:9598] synonym: "Vulvovaginal gland" EXACT [FMA:9598] xref: BTO:0003115 xref: FMA:9598 is_a: UBERON:0002530 ! gland is_a: UBERON:0003297 ! implied link automatically realized ! gland of integumental system relationship: systemic_part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0000461 name: minor vestibular gland alt_id: UBERON:BTO_0003116-FMA_20019 synonym: "Glandula vestibular minor" EXACT [FMA:20019] synonym: "Minor vestibular gland" EXACT [FMA:20019] xref: BTO:0003116 xref: FMA:20019 is_a: UBERON:0002530 ! gland [Term] id: UBERON:0000462 name: villus is_obsolete: true [Term] id: UBERON:0000463 name: portion of organism substance alt_id: UBERON:CARO_0000004-FBbt_00007019 def: "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [CARO:MAH] comment: This class was created automatically from a combination of ontologies xref: BILA:0000004 xref: CARO:0000004 xref: FBbt:00007019 xref: HAO:0000004 xref: ZFA:0001487 is_a: UBERON:0000465 ! material anatomical entity disjoint_from: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000464 name: anatomical space alt_id: UBERON:CARO_0000005-FBbt_00007017-FMA_5897-ZFA_0001643 def: "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures. // Non-material physical anatomical entity of three dimensions, which is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more body substances or anatomical structures. Examples: celom, thoracic cavity, lesser sac of peritoneum, cavity of right atrium, lumen of aorta, mediastinum, anterior compartment of forearm, intervertebral foramen. // Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [CARO:MAH, ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "Anatomical space" EXACT [] xref: BILA:0000005 xref: CARO:0000005 xref: FBbt:00007017 xref: FMA:5897 xref: HAO:0000005 xref: TAO:0001668 xref: ZFA:0001643 is_a: UBERON:0000466 ! immaterial anatomical entity relationship: surrounded_by UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000465 name: material anatomical entity alt_id: UBERON:CARO_0000006-FBbt_00007016-FMA_67165-ZFA_0001487 def: "Anatomical entity that has mass." [CARO:MAH] comment: This class was created automatically from a combination of ontologies synonym: "Material anatomical entity" EXACT [] xref: BILA:0000006 xref: CARO:0000006 xref: FBbt:00007016 xref: FMA:67165 xref: HAO:0000006 xref: TAO:0001836 is_a: UBERON:0001062 ! anatomical entity [Term] id: UBERON:0000466 name: immaterial anatomical entity alt_id: UBERON:CARO_0000007-FBbt_00007015 def: "Anatomical entity that has no mass." [CARO:MAH] comment: This class was created automatically from a combination of ontologies xref: BILA:0000007 xref: CARO:0000007 xref: FBbt:00007015 xref: FMA:67112 xref: HAO:0000007 is_a: UBERON:0001062 ! anatomical entity disjoint_from: UBERON:0000465 ! material anatomical entity [Term] id: UBERON:0000467 name: anatomical system alt_id: UBERON:CARO_0000011-XAO_0003002-ZFA_0001439 alt_id: UBERON:FBbt_00004856-FBbt_00004969-FMA_7149-FMA_72979-MA_0000003-MA_0000014-MIAA_0000033-WBbt_0005730-XAO_0000176 def: "Anatomical group that is has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity[CARO]. A group of organs that work together to perform a certain task [Wikipedia]." [CARO:0000011, CARO:MAH, Wikipedia:Organ_system, ZFIN:curator] subset: uberon_slim synonym: "Organ system" EXACT [] synonym: "organ system" EXACT [] xref: AAO:0000007 xref: BILA:0000011 xref: CARO:0000011 xref: EHDAA:392 xref: FBbt:00004856 xref: FMA:7149 xref: galen:AnatomicalSystem xref: HAO:0000011 xref: MA:0000003 xref: ncithesaurus:Organ_System xref: TAO:0001439 xref: XAO:0003002 xref: ZFA:0001439 is_a: UBERON:0000480 ! anatomical group [Term] id: UBERON:0000468 name: multi-cellular organism alt_id: UBERON:CARO_0000012-XAO_0003004 def: "Anatomical structure that is an individual member of a species and consists of more than one cell. // Anatomical structure that is an individual member of Xenopus laevis." [CARO:0000012, CARO:MAH, Wikipedia:Multi-cellular_organism] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "body" RELATED [] synonym: "whole organism" EXACT [] xref: BILA:0000012 xref: CARO:0000012 xref: FMA:256133 xref: HAO:0000012 xref: ncithesaurus:Whole_Organism xref: TAO:0001094 xref: XAO:0003004 xref: ZFA:0001094 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000470 name: cell part alt_id: UBERON:CARO_0000014-FBbt_00007012-FMA_86454 def: "Anatomical structure that is a direct part of the cell." [CARO:MAH] comment: This class was created automatically from a combination of ontologies synonym: "cell component" EXACT [] xref: BILA:0000014 xref: CARO:0000014 xref: FBbt:00007012 xref: FMA:86454 xref: GO:0044464 xref: HAO:0000014 xref: ncithesaurus:Cell_Part is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000471 name: compound organ component alt_id: UBERON:CARO_0000019-XAO_0003039-ZFA_0001489 def: "Multi-tissue structure that is part of a compound organ. // Multi-tissue structure that is part of a compound organ. // Multi-tissue structure that is part of a compound organ." [CARO:0000019, CARO:MAH, ZFIN:curator] comment: This class was created automatically from a combination of ontologies xref: BILA:0000019 xref: CARO:0000019 xref: HAO:0000019 xref: TAO:0001489 xref: XAO:0003039 xref: ZFA:0001489 is_a: UBERON:0000481 ! multi-tissue structure [Term] id: UBERON:0000472 name: simple organ alt_id: UBERON:CARO_0000021-XAO_0003038-ZFA_0001492 def: "Multi-tissue structure that is not part of a compound organ. // Multi-tissue structure that is not part of a compound organ. // Multi-tissue structure that is not part of a compound organ." [CARO:0000021, CARO:MAH, ZFIN:curator] comment: This class was created automatically from a combination of ontologies xref: BILA:0000021 xref: CARO:0000021 xref: HAO:0000021 xref: TAO:0001492 xref: XAO:0003038 xref: ZFA:0001492 is_a: UBERON:0000481 ! multi-tissue structure [Term] id: UBERON:0000473 name: testis alt_id: UBERON:CARO_0000027-FBbt_00004927-FBbt_00004928-FBbt_00007004-FMA_45664-FMA_7210-MA_0000396-MA_0000411-MIAA_0000029-MIAA_0000132-WBbt_0006794-XAO_0000155-XAO_0000157-XAO_0003006-ZFA_0000242-ZFA_0000598 def: "gonad of a male animal, produces sperm. // The organs of the male reproductive system. // Reproductive organ that produces and releases sperm. // MMale reproductive organ." [CARO:0000027, CARO:MAH, FB:FBrf0007735, FB:FBrf0034075, NLM:genitalia, WB:wjc, Wikipedia:Testis, XB:curator, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "male" RELATED [] xref: AAO:0000606 xref: BILA:0000124 xref: BTO:0001363 xref: EFO:0000984 xref: EHDAA:8146 xref: FBbt:00004928 xref: FMA:7210 xref: GAID:396 xref: HAO:0001007 xref: HOG:0000252 xref: MA:0000411 xref: MAT:0000132 xref: MIAA:0000132 xref: ncithesaurus:Testis xref: TAO:0000598 xref: WBbt:0006794 xref: XAO:0000157 xref: ZFA:0000598 is_a: UBERON:0000991 ! gonad intersection_of: UBERON:0000991 ! gonad intersection_of: part_of UBERON:0000079 ! male reproductive system relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0000474 name: female reproductive system alt_id: UBERON:CARO_0000028-FBbt_00004864-FBbt_00007011-FMA_45663-MA_0000381-MIAA_0000028-XAO_0000156-XAO_0003005-ZFA_0000303 def: "The organs of the female reproductive system." [FB:FBrf0007735, FB:FBrf0034074, NLM:genitalia, Wikipedia:Female_genitalia] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "female genital system" RELATED [] synonym: "female genitalia" RELATED [] xref: BTO:0000083 xref: EFO:0000969 xref: FBbt:00004827 xref: FBbt:00004864 xref: FMA:45663 xref: GAID:364 xref: HAO:0000324 xref: HOG:0000726 xref: MA:0000381 xref: MIAA:0000028 xref: ncithesaurus:Female_Reproductive_System xref: OpenCyc:Mx4rvVipTZwpEbGdrcN5Y29ycA xref: XAO:0000156 is_a: UBERON:0000990 ! reproductive system intersection_of: UBERON:0000990 ! reproductive system intersection_of: part_of UBERON:0003100 ! female organism relationship: part_of UBERON:0003100 ! female organism [Term] id: UBERON:0000475 name: organism subdivision alt_id: UBERON:CARO_0000032-FBbt_00007009-FMA_67504-MIAA_0000293-XAO_0003013-ZFA_0001308 alt_id: UBERON:MA_0002433-Principal def: "Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism. // Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism. // Anatomical structure, which is a subdivision of a cardinal body part; it may exclude bones; is demarcated from other subdivisions of the same cardinal body part by anatomical surfaces or lines or topographical references; together with other contiguous subdivisions of the same cardinal body part, it constitutes a cardinal body part. Examples: thorax, perineum, back of neck, forearm, hand, phalanx, nose, auricle of ear, scrotum. // Anatomical structure that is a primary subdivision of the whole organism. // Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism." [CARO:0000032, CARO:MAH, Wikipedia:Body_part, ZFIN:curator] subset: uberon_slim synonym: "anatomic region" EXACT [] synonym: "anatomical site" RELATED [] synonym: "body part" EXACT [] synonym: "Principal body part subdivision" EXACT [] synonym: "principal body part subdivision" EXACT [] synonym: "Subdivision of cardinal body part" EXACT [] synonym: "subdivision of cardinal body part" RELATED [] xref: BILA:0000032 xref: CARO:0000032 xref: EFO:0000808 xref: FBbt:00007009 xref: FMA:67504 xref: galen:BodyPart xref: HAO:0000032 xref: MA:0002433 xref: MAT:0000293 xref: MIAA:0000293 xref: ncithesaurus:Body_Part xref: NULL:Principal xref: TAO:0001308 xref: XAO:0003013 xref: ZFA:0001308 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0000476 name: acellular anatomical structure alt_id: UBERON:CARO_0000040-FBbt_00007013-FMA_63863-ZFA_0000382 def: "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue. // Anatomical structure which consists of cell parts and cell substances and together does not constitute a cell or a tissue. Examples: basement membrane, osteoid, prostatic concretion. // Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." [CARO:MAH, ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "Acellular anatomical structure" EXACT [] xref: BILA:0000040 xref: CARO:0000040 xref: FBbt:00007013 xref: FMA:63863 xref: HAO:0000040 xref: TAO:0000382 xref: XAO:0003162 xref: ZFA:0000382 is_a: UBERON:0000061 ! anatomical structure disjoint_from: UBERON:0000480 ! anatomical group [Term] id: UBERON:0000477 name: anatomical cluster alt_id: UBERON:CARO_0000041-FMA_49443-ZFA_0001478 def: "Anatomical group that has its parts adjacent to one another. // Anatomical structure, which has as its parts a heterogeneous collection of organs, organ parts, cells or body part subdivisions that are adjacent to, or continuous with one another; does not constitute an organ, organ system or organ system subdivision, or body part or body part subdivision. Examples: joint, adnexa of uterus, root of lung, renal pedicle, back. // Anatomical group that has its parts adjacent to one another." [CARO:MAH, ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "Anatomical cluster" EXACT [] xref: BILA:0000041 xref: CARO:0000041 xref: FMA:49443 xref: HAO:0000041 xref: TAO:0001478 xref: XAO:0003160 xref: ZFA:0001478 is_a: UBERON:0000480 ! anatomical group disjoint_from: UBERON:0000467 ! anatomical system [Term] id: UBERON:0000478 name: extraembryonic structure alt_id: UBERON:CARO_0000042-FBbt_00005835-FMA_85537-MIAA_0000061-ZFA_0000020 def: "Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [CARO:MAH, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Extra-embryonic structure" EXACT [] synonym: "extra-embryonic structure" EXACT [] synonym: "extraembryonic component" RELATED [] synonym: "extraembryonic tissue" EXACT [] xref: BILA:0000042 xref: BTO:0003360 xref: CARO:0000042 xref: EFO:0001406 xref: FBbt:00005835 xref: FMA:85537 xref: HAO:0000042 xref: HOG:0000292 xref: MAT:0000061 xref: MIAA:0000061 xref: ncithesaurus:Extraembryonic_Structure xref: TAO:0000020 xref: ZFA:0000020 is_a: UBERON:0000061 ! anatomical structure disjoint_from: UBERON:0002050 ! embryonic structure relationship: adjacent_to UBERON:0002050 ! embryonic structure relationship: existence_starts_and_ends_during UBERON:0000068 ! embryo stage [Term] id: UBERON:0000479 name: portion of tissue alt_id: UBERON:CARO_0000043-FBbt_00007003-XAO_0003040-ZFA_0001477 def: "Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships. // Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships. // Anatomical structure that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships. // Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships." [CARO:0000043, CARO:MAH, ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "tissue" RELATED [] synonym: "tissue portion" EXACT [] xref: BILA:0000043 xref: CARO:0000043 xref: FBbt:00007003 xref: FMA:9637 xref: HAO:0000043 xref: TAO:0001477 xref: XAO:0003040 xref: ZFA:0001477 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000480 name: anatomical group alt_id: UBERON:CARO_0000054-XAO_0003001-ZFA_0001512 def: "Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue. // Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue. // Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue." [CARO:0000054, CARO:MAH, ZFIN:curator] comment: This class was created automatically from a combination of ontologies xref: BILA:0000054 xref: CARO:0000054 xref: HAO:0000054 xref: TAO:0001512 xref: XAO:0003001 xref: ZFA:0001512 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0000481 name: multi-tissue structure alt_id: UBERON:CARO_0000055-FBbt_00007010-XAO_0003037-ZFA_0001488 def: "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. // Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. // Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types. // Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." [CARO:0000055, CARO:MAH, ZFIN:curator] comment: This class was created automatically from a combination of ontologies xref: BILA:0000055 xref: CARO:0000055 xref: FBbt:00007010 xref: HAO:0000055 xref: TAO:0001488 xref: XAO:0003037 xref: ZFA:0001488 is_a: UBERON:0000061 ! anatomical structure relationship: has_part UBERON:0000479 ! portion of tissue [Term] id: UBERON:0000482 name: basal lamina alt_id: UBERON:CARO_0000065-FMA_62918-ZFA_0001485 def: "Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue. // Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue." [CARO:MAH, Wikipedia:Basal_lamina, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Basal lamina" EXACT [] synonym: "Basal lamina of connective tissue" EXACT [] synonym: "basal lamina of connective tissue" EXACT [] xref: BILA:0000065 xref: CARO:0000065 xref: FMA:62918 xref: GO:0005605 xref: HAO:0000065 xref: ncithesaurus:Basal_Lamina xref: TAO:0001485 xref: WBbt:0005756 xref: XAO:0003163 xref: ZFA:0001485 is_a: UBERON:0000476 ! acellular anatomical structure relationship: adjacent_to UBERON:0000483 ! epithelium [Term] id: UBERON:0000483 name: epithelium alt_id: UBERON:CARO_0000066-FBbt_00007005-FMA_9639-XAO_0003045-ZFA_0001486 def: "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium." [CARO:MAH, Wikipedia:Epithelium, ZFA:0001486, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Epithelial tissue" EXACT [] synonym: "epithelial tissue" EXACT [] synonym: "Epithelium" EXACT [] xref: AAO:0000144 xref: BILA:0000066 xref: BTO:0000416 xref: CARO:0000066 xref: EHDAA:1545 xref: EHDAA:2126 xref: EHDAA:3792 xref: EHDAA:3800 xref: EHDAA:3806 xref: EHDAA:4168 xref: EHDAA:4174 xref: EHDAA:4182 xref: EHDAA:4188 xref: EHDAA:4196 xref: EHDAA:4696 xref: EHDAA:4702 xref: EHDAA:4710 xref: EHDAA:4722 xref: EHDAA:4724 xref: EHDAA:4730 xref: EHDAA:4743 xref: EHDAA:5003 xref: EHDAA:5007 xref: EHDAA:510 xref: EHDAA:5145 xref: EHDAA:5155 xref: EHDAA:5161 xref: EHDAA:5167 xref: EHDAA:5173 xref: EHDAA:5198 xref: EHDAA:5204 xref: EHDAA:6100 xref: EHDAA:6106 xref: EHDAA:6116 xref: EHDAA:6126 xref: EHDAA:6136 xref: EHDAA:6144 xref: EHDAA:6150 xref: EHDAA:6156 xref: EHDAA:6162 xref: EHDAA:6168 xref: EHDAA:6180 xref: EHDAA:6186 xref: EHDAA:6192 xref: EHDAA:6202 xref: EHDAA:6214 xref: EHDAA:6220 xref: EHDAA:6230 xref: EHDAA:6236 xref: EHDAA:6246 xref: EHDAA:6256 xref: EHDAA:6266 xref: EHDAA:6276 xref: EHDAA:6286 xref: EHDAA:6294 xref: EHDAA:6300 xref: EHDAA:6306 xref: EHDAA:6312 xref: EHDAA:6318 xref: EHDAA:6526 xref: EHDAA:6803 xref: EHDAA:6966 xref: EHDAA:7090 xref: EHDAA:7765 xref: EHDAA:7787 xref: EHDAA:7794 xref: EHDAA:7800 xref: EHDAA:7806 xref: EHDAA:7991 xref: EHDAA:7999 xref: EHDAA:8013 xref: EHDAA:8019 xref: EHDAA:8027 xref: EHDAA:8037 xref: EHDAA:8049 xref: EHDAA:8055 xref: EHDAA:8173 xref: EHDAA:8185 xref: EHDAA:8201 xref: EHDAA:8211 xref: EHDAA:8223 xref: EHDAA:9035 xref: EHDAA:9043 xref: EHDAA:9049 xref: EHDAA:9248 xref: EHDAA:9257 xref: EHDAA:9285 xref: EHDAA:931 xref: FBbt:00007005 xref: FMA:9639 xref: GAID:402 xref: HAO:0000066 xref: HOG:0000387 xref: ncithesaurus:Epithelium xref: TAO:0001486 xref: XAO:0003045 xref: ZFA:0001486 is_a: UBERON:0000119 ! cell layer [Term] id: UBERON:0000484 name: simple cuboidal epithelium alt_id: UBERON:CARO_0000067-FMA_45566-ZFA_0001497 def: "Unilaminar epithelium that consists of a single layer of cuboidal cells. // Unilaminar epithelium, which consists of a single layer of cuboidal cells. Examples: epithelium of proximal renal tubule, pigmented layer of retina, epithelium of lens. // Unilaminar epithelium that consists of a single layer of cuboidal cells." [CARO:MAH, Wikipedia:Simple_cuboidal_epithelium, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Epithelium simplex cuboideum" EXACT [] synonym: "epithelium simplex cuboideum" EXACT [] synonym: "Simple cuboidal epithelium" EXACT [] xref: BILA:0000067 xref: CARO:0000067 xref: FMA:45566 xref: HAO:0000067 xref: ncithesaurus:Simple_Cuboidal_Epithelium xref: TAO:0001497 xref: ZFA:0001497 is_a: UBERON:0000490 ! unilaminar epithelium [Term] id: UBERON:0000485 name: simple columnar epithelium alt_id: UBERON:CARO_0000068-FMA_45567-ZFA_0001496 def: "Unilaminar epithelium, which consists of a single layer of columnar cells. Examples: ciliated columnar epithelium, gastric epithelium, microvillus columnar epithelium." [CARO:MAH, Wikipedia:Simple_columnar_epithelium, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Epithelium simplex columnare" EXACT [] synonym: "epithelium simplex columnare" EXACT [] synonym: "Simple columnar epithelium" EXACT [] synonym: "simple columnar epithelium" EXACT [] xref: CARO:0000068 xref: FMA:45567 xref: HAO:0000068 xref: ncithesaurus:Simple_Columnar_Epithelium xref: TAO:0001496 xref: ZFA:0001496 is_a: UBERON:0000490 ! unilaminar epithelium [Term] id: UBERON:0000486 name: multilaminar epithelium alt_id: UBERON:CARO_0000069-FMA_45562-ZFA_0001494 def: "Epithelium which consists of more than one layer of epithelial cells that may or may not be in contact with a basement membrane. Examples: keratinized stratified squamous epithelium, ciliated stratified columnar epithelium." [CARO:MAH, Wikipedia:Stratified_epithelium, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Multilaminar epithelium" EXACT [] synonym: "Stratified epithelium" EXACT [] synonym: "stratified epithelium" EXACT [] xref: BILA:0000069 xref: BTO:0002074 xref: CARO:0000069 xref: FMA:45562 xref: HAO:0000069 xref: ncithesaurus:Stratified_Epithelium xref: TAO:0001494 xref: ZFA:0001494 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0000487 name: simple squamous epithelium alt_id: UBERON:CARO_0000070-FMA_45565-ZFA_0001498 def: "Unilaminar epithelium that consists of a single layer of squamous cells. // Unilaminar epithelium which consists of a single layer of squamous cells. Examples: pulmonary alveolar epithelium, endothelium. // Unilaminar epithelium that consists of a single layer of squamous cells." [CARO:MAH, Wikipedia:Simple_squamous_epithelium, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Epithelium simplex squamosum" EXACT [] synonym: "epithelium simplex squamosum" EXACT [] synonym: "Simple squamous epithelium" EXACT [] xref: BILA:0000070 xref: CARO:0000070 xref: FMA:45565 xref: HAO:0000070 xref: ncithesaurus:Simple_Squamous_Epithelium xref: TAO:0001498 xref: ZFA:0001498 is_a: UBERON:0000490 ! unilaminar epithelium [Term] id: UBERON:0000488 name: atypical epithelium alt_id: UBERON:CARO_0000071-FMA_61741-ZFA_0001493 def: "Epithelium that consists of epithelial cells not arranged in one ore more layers. // Epithelium the cells of which do not conform to the typical arrangement of unilaminar and multilaminar epithelium. Examples: olfactory epithelium; epithelium of ciliary body. // Epithelium that consists of epithelial cells not arranged in one or more layers." [CARO:MAH, ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "Atypical epithelium" EXACT [] synonym: "Heterogenous epithelium" EXACT [] synonym: "heterogenous epithelium" EXACT [] xref: BILA:0000071 xref: CARO:0000071 xref: FMA:61741 xref: HAO:0000071 xref: TAO:0001493 xref: ZFA:0001493 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0000489 name: cavitated compound organ alt_id: UBERON:CARO_0000072-ZFA_0001490 def: "Compound organ that contains one or more macroscopic anatomical spaces. // Compound organ that contains one or more macroscopic anatomical spaces." [CARO:MAH, ZFIN:curator] comment: This class was created automatically from a combination of ontologies xref: BILA:0000072 xref: CARO:0000072 xref: HAO:0000072 xref: TAO:0001490 xref: XAO:0003165 xref: ZFA:0001490 is_a: UBERON:0003103 ! compound organ [Term] id: UBERON:0000490 name: unilaminar epithelium alt_id: UBERON:CARO_0000073-FMA_45561-ZFA_0001495 def: "Epithelium which consists of a single layer of epithelial cells. Examples: endothelium, mesothelium, glandular squamous epithelium." [CARO:MAH, ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "Simple epithelium" EXACT [] synonym: "simple epithelium" EXACT [] synonym: "Unilaminar epithelium" EXACT [] xref: BILA:0000073 xref: CARO:0000073 xref: FMA:45561 xref: HAO:0000073 xref: ncithesaurus:Simple_Epithelium xref: TAO:0001495 xref: ZFA:0001495 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0000491 name: solid compound organ alt_id: UBERON:CARO_0000074-ZFA_0001491 def: "Compound organ that does not contain macroscopic anatomical spaces. // Compound organ that does not contain macroscopic anatomical spaces." [CARO:MAH, ZFIN:curator] comment: This class was created automatically from a combination of ontologies xref: BILA:0000074 xref: CARO:0000074 xref: HAO:0000074 xref: TAO:0001491 xref: XAO:0003164 xref: ZFA:0001491 is_a: UBERON:0003103 ! compound organ [Term] id: UBERON:0000908 name: hippocampal commissure alt_id: UBERON:Commissure-MA_0002723 def: "The lateral portions of the body of the fornix are joined by a thin triangular lamina, named the psalterium (lyra). This lamina contains some transverse fibers that connect the two hippocampi across the middle line and constitute the commissure of fornix (hippocampal commissure)." [Wikipedia:Hippocampal_commissure] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "commissure of fornix" RELATED [Wikipedia:Commissure_of_fornix] xref: FMA:61970 xref: MA:0002723 xref: NULL:Commissure is_a: UBERON:0000061 ! anatomical structure relationship: attached_to UBERON:0001954 ! hippocampus relationship: part_of UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0000909 name: cerebellum lobule vi alt_id: UBERON:Declive-MA_0001003 comment: This class was created automatically from a combination of ontologies synonym: "cerebellum lobule VI" EXACT [] synonym: "declive" RELATED [] xref: MA:0001003 xref: NULL:Declive is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0000910 name: chyme alt_id: UBERON:ENVO_02000026-FMA_62961 def: "Chyme is a bodily fluid consisting of a liquid substance found in the stomach before passing through the pyloric valve and entering the duodenum. It results from the mechanical and chemical breakdown of a bolus and consists of partially digested food, water, hydrochloric acid, and various digestive enzymes." [Wikipedia:Chyme] synonym: "chymus" EXACT [ENVO:02000026] xref: ENVO:02000026 xref: FMA:62961 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000911 name: chyle alt_id: UBERON:ENVO_02000030-FMA_61403 def: "Chyle is a bodily fluid consisting of a milky fluid consisting of lymph and emulsified fats; formed in the small intestine during digestion of ingested fats." [http://wordnet.princeton.edu/perl/webwn?s=chyle, Wikipedia:Chyle] xref: ENVO:02000030 xref: FMA:61403 is_a: UBERON:0002391 ! lymph [Term] id: UBERON:0000912 name: mucus alt_id: UBERON:ENVO_02000040-FMA_66938 def: "Mucus is a bodily fluid consisting of a slippery secretion of the lining of the mucous membranes in the body. It is a viscous colloid containing antiseptic enzymes (such as lysozyme) and immunoglobulins. Mucus is produced by goblet cells in the mucous membranes that cover the surfaces of the membranes. It is made up of mucins and inorganic salts suspended in water." [Wikipedia:Mucus] xref: ENVO:02000040 xref: FMA:66938 xref: ncithesaurus:Mucus xref: OpenCyc:Mx4rvVjHq5wpEbGdrcN5Y29ycA is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000913 name: interstitial fluid alt_id: UBERON:ENVO_02000042-FMA_9673 def: "Transudate which surrounds cells within a tissue. // Interstitial fluid is a bodily fluid consisting of a solution which bathes and surrounds the cells of multicellular animals. It is the main component of the extracellular fluid, which also includes plasma and transcellular fluid." [FMA:9673, Wikipedia:Interstitial_fluid] synonym: "intercellular fluid" EXACT [ENVO:02000042] synonym: "tissue fluid" EXACT [ENVO:02000042] xref: ENVO:02000042 xref: FMA:9673 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0000914 name: segment alt_id: UBERON:FBbt_00000003-FMA_11367-MIAA_0000271 def: "One of the repeated divisions of the whole organism." [FB:gg, Wikipedia:Segment] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FBbt:00000003 xref: HAO:0000929 xref: MAT:0000271 xref: MIAA:0000271 xref: ncithesaurus:Segmental is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0000915 name: thorax alt_id: UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295 def: "Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [ISBN:3110148986, Wikipedia:Thorax] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Thorax" EXACT [] synonym: "upper body" RELATED [] xref: BTO:0001368 xref: EFO:0000965 xref: FBbt:00000015 xref: FMA:9576 xref: GAID:91 xref: HAO:0001015 xref: MA:0000022 xref: MAT:0000295 xref: MIAA:0000295 xref: ncithesaurus:Thorax is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0000916 name: abdomen alt_id: UBERON:FBbt_00000020-FMA_9577-MA_0000029-MIAA_0000298 def: "In vertebrates such as mammals the abdomen (belly) constitutes the part of the body between the thorax (chest) and pelvis. The region enclosed by the abdomen is termed the abdominal cavity. In arthropods it is the most distal section of the body which lies behind the thorax or cephalothorax. //Dmel: The third large region of the insect body, which originally comprised twelve segments, each segment is usually formed by a dorsal tergite and a ventral sternite and carries on both sides a spiracle, sometimes, both the dorsal and the ventral plates are further subdivided to give rise to laterotergites and laterosternites. In the context of Drosophila refers to the most posterior of the three main tagmata or divisions of the body plan, after the head and the thorax. // Subdivision of trunk, which is demarcated from the thorax internally by the inferior surface of the sternocostal part of the diaphragm and externally by the costal margin, from the pelvis by the plane of the superior pelvic aperture and from the lower limbs by the inguinal folds; together with the thorax, pelvis, and perineum, it constitutes the trunk. Examples: There is only one abdomen." [FB:gg, ISBN:3110148986, Wikipedia:Abdomen] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Abdomen" EXACT [] synonym: "adult abdomen" RELATED [] synonym: "belly" RELATED [] xref: BTO:0000020 xref: EFO:0000213 xref: FBbt:00000020 xref: FMA:9577 xref: GAID:16 xref: galen:Abdomen xref: HAO:0000015 xref: MA:0000029 xref: MAT:0000298 xref: MIAA:0000298 xref: OpenCyc:Mx4rvVjgyZwpEbGdrcN5Y29ycA is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0000917 name: abdominal segment alt_id: UBERON:FBbt_00000021-SPD_0000055 xref: FBbt:00000021 xref: HAO:0000016 xref: SPD:0000055 is_a: UBERON:0000914 ! segment intersection_of: UBERON:0000914 ! segment intersection_of: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0000918 name: yolk alt_id: UBERON:FBbt_00000035-MIAA_0000335-XAO_0000281 def: "The nutritive substance contained in the egg." [FB:gg, Wikipedia:Yolk] comment: TODO - check - embryonic structure vs cell component subset: uberon_slim synonym: "vegetal yolk mass" BROAD [] synonym: "yolk cell" RELATED [] xref: FBbt:00000035 xref: GO:0060417 yolk xref: MAT:0000335 xref: MIAA:0000335 xref: TAO:0000084 xref: XAO:0000281 xref: ZFA:0000084 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000919 name: lipid droplet alt_id: UBERON:FBbt_00000037-FMA_62962 def: "Cell substance contained in lipid vacoule." [] comment: In GO this is a cellular component; in FMA it is a acellular anatomical structure. These two parent classes are disjoint in CARO subset: uberon_slim synonym: "Lipid droplet" EXACT [] xref: FBbt:00000037 xref: FMA:62962 xref: GO:0005811 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0000918 ! yolk [Term] id: UBERON:0000920 name: chorion (egg) alt_id: UBERON:FBbt_00000038-FMA_80224-ZFA_0000329 alt_id: UBERON:FMA_18674-MA_0001715 def: "A hard shell external to the vitelline membrane of the egg[FBbt]. The egg shell[ZFA]. A protective, noncellular membrane that surrounds the eggs of various animals including insects and fish [GO]." [FB:gg, GO:0042600, Wikipedia:Chorion_(egg)] subset: uberon_slim synonym: "chorion" RELATED [] xref: FBbt:00000038 xref: GO:0042600 xref: TAO:0000329 xref: ZFA:0000329 is_a: UBERON:0000476 ! acellular anatomical structure relationship: surrounds UBERON:0003125 ! vitelline membrane [Term] id: UBERON:0000921 name: pronucleus alt_id: UBERON:FBbt_00000048-FMA_84673 def: "." [Wikipedia:Pronucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pronucleus" EXACT [] xref: FBbt:00000048 xref: FMA:84673 xref: GO:0045120 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0000922 name: embryo alt_id: UBERON:FBbt_00000052-FMA_69068-MIAA_0000019-XAO_0000113 def: "Anatomical entity that comprises the organism in the early stages of growth and differentiation that are characterized by cleavage, the laying down of fundamental tissues, and the formation of primitive organs and organ systems. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant." [BTO:0000379, FB:FBrf0039741, FB:FBrf0041814, GO:0009790, Wikipedia:Embryo] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "developmental tissue" EXACT [] synonym: "Embryo" EXACT [] xref: BTO:0000379 xref: EFO:0001367 xref: EHDAA:38 xref: EV:0300001 xref: FBbt:00000052 xref: FMA:69068 xref: GAID:963 xref: MAT:0000226 xref: MIAA:0000019 xref: ncithesaurus:Embryo xref: OGEM:000001 xref: OGES:000000 xref: OGES:000022 xref: XAO:0000113 xref: XAO:1000012 is_a: UBERON:0002050 ! embryonic structure relationship: existence_ends_with UBERON:0000068 ! embryo stage relationship: existence_starts_with UBERON:0000068 ! embryo stage [Term] id: UBERON:0000923 name: germ layer alt_id: UBERON:FBbt_00000110-FMA_69069 alt_id: UBERON:XAO_0003011-ZFA_0001122 def: "A layer of cells produced during the process of gastrulation during the early development of the animal embryo, which is distinct from other such layers of cells, as an early step of cell differentiation. The three types of germ layers are the endoderm, ectoderm, and mesoderm." [Wikipedia:Germ_layer] subset: uberon_slim synonym: "embryonic germ layer" RELATED [] synonym: "embryonic germ layers" RELATED [] synonym: "Embryonic tissue" EXACT [] synonym: "embryonic tissue" EXACT [] synonym: "Germ layer" EXACT [] synonym: "germ layer" RELATED [] synonym: "primary germ layer" EXACT [] xref: AAO:0000480 xref: BILA:0000035 xref: BTO:0000556 xref: FBbt:00000110 xref: FMA:69069 xref: GAID:1303 xref: HOG:0001223 xref: ncithesaurus:Embryonic_Tissue xref: TAO:0001122 xref: XAO:0003011 xref: ZFA:0001122 is_a: UBERON:0000479 ! portion of tissue is_a: UBERON:0001048 ! primordium relationship: develops_from UBERON:0002532 ! epiblast [Term] id: UBERON:0000924 name: ectoderm alt_id: UBERON:FBbt_00000111-FMA_69070-MIAA_0000173-XAO_0000001-ZFA_0000016 def: "The outermost germ layer of the embryo. // Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [FB:gg, OMD:ectoderm, Wikipedia:Ectoderm] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ectoderm" EXACT [] xref: AAO:0000137 xref: BILA:0000036 xref: BTO:0000315 xref: EFO:0000414 xref: EHDAA:1084 xref: EHDAA:1090 xref: EHDAA:132 xref: EHDAA:138 xref: EHDAA:1636 xref: EHDAA:1652 xref: EHDAA:1667 xref: EHDAA:1673 xref: EHDAA:1701 xref: EHDAA:2360 xref: EHDAA:538 xref: EHDAA:577 xref: EHDAA:585 xref: EHDAA:597 xref: EHDAA:609 xref: EHDAA:615 xref: EHDAA:621 xref: FBbt:00000111 xref: FMA:69070 xref: GAID:1304 xref: MAT:0000155 xref: MAT:0000173 xref: MIAA:0000173 xref: ncithesaurus:Ectoderm xref: TAO:0000016 xref: XAO:0000001 xref: ZFA:0000016 is_a: UBERON:0000923 ! germ layer [Term] id: UBERON:0000925 name: endoderm alt_id: UBERON:FBbt_00000125-FMA_69071-MIAA_0000175-XAO_0000090-ZFA_0000017 def: "The innermost germ layer of the embryo. // Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [FB:gg, OMD:endoderm, Wikipedia:Endoderm] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Endoderm" EXACT [] synonym: "entoderm" RELATED [] xref: AAO:0000139 xref: BILA:0000038 xref: BTO:0000800 xref: EFO:0002545 xref: EHDAA:103 xref: EHDAA:1088 xref: EHDAA:1092 xref: EHDAA:1638 xref: EHDAA:1654 xref: EHDAA:166 xref: EHDAA:1671 xref: EHDAA:1675 xref: EHDAA:524 xref: EHDAA:530 xref: EHDAA:540 xref: EHDAA:581 xref: EHDAA:587 xref: EHDAA:599 xref: EHDAA:619 xref: EHDAA:623 xref: FBbt:00000125 xref: FMA:69071 xref: GAID:1305 xref: MAT:0000175 xref: MIAA:0000175 xref: ncithesaurus:Endoderm xref: TAO:0000017 xref: XAO:0000090 xref: ZFA:0000017 is_a: UBERON:0000923 ! germ layer [Term] id: UBERON:0000926 name: mesoderm alt_id: UBERON:FBbt_00000126-FMA_69072-MIAA_0000174-XAO_0000050-ZFA_0000041 def: "The middle germ layer of the embryo, between the endoderm and ectoderm. // Primary germ layer that is the middle of the embryo's three germ layers." [FB:gg, OMD:mesoderm, Wikipedia:Mesoderm] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Mesoderm" EXACT [] synonym: "mesodermal mantle" RELATED [] xref: AAO:0000304 xref: BILA:0000037 xref: BTO:0000839 xref: EFO:0001981 xref: EHDAA:124 xref: EHDAA:140 xref: EHDAA:154 xref: EHDAA:160 xref: EHDAA:168 xref: EHDAA:183 xref: FBbt:00000126 xref: FMA:69072 xref: GAID:522 xref: MAT:0000174 xref: MIAA:0000174 xref: ncithesaurus:Mesoderm xref: TAO:0000041 xref: XAO:0000050 xref: ZFA:0000041 is_a: UBERON:0000923 ! germ layer [Term] id: UBERON:0000927 name: mesectoderm alt_id: UBERON:FBbt_00000136-MIAA_0000243 def: "A double row of cells which are located at the midline from the end of gastrulations. The morphology of these cells is distinct from adjacent ectodermal cells - they are elongated such that one end remains exposed to the outside of the embryo at the mideline while the other end bissects the internalised mesoderm." [FB:FBrf0089570] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "MesEc" RELATED [] xref: FBbt:00000136 xref: MAT:0000243 xref: MIAA:0000243 is_a: UBERON:0000923 ! germ layer relationship: adjacent_to UBERON:0000924 ! ectoderm [Term] id: UBERON:0000928 name: embryonic segment alt_id: UBERON:FBbt_00000154-MIAA_0000244 comment: This class was created automatically from a combination of ontologies synonym: "segment - embryonic" EXACT [] xref: FBbt:00000154 xref: MAT:0000244 xref: MIAA:0000244 is_a: UBERON:0000914 ! segment intersection_of: UBERON:0000914 ! segment intersection_of: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0000929 name: pharyngeal branch alt_id: UBERON:FBbt_00000394-FMA_6234 def: "Motor nerve of the pharynx, arises from the upper part of the ganglion nodosum, and consists principally of filaments from the cranial portion of the accessory nerve." [Wikipedia:Pharyngeal_branch_of_vagus_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pharyngeal branch" EXACT [] synonym: "Pharyngeal branch of inferior vagal ganglion" EXACT [] synonym: "pharyngeal branch of inferior vagal ganglion" EXACT [] synonym: "Pharyngeal branch of vagus" EXACT [] synonym: "pharyngeal branch of vagus" EXACT [] synonym: "Pharyngeal branch of vagus nerve" EXACT [] synonym: "pharyngeal branch of vagus nerve" EXACT [] synonym: "Ramus pharyngealis nervi vagalis" EXACT [] synonym: "ramus pharyngealis nervi vagalis" EXACT [] synonym: "Tenth cranial nerve pharyngeal branch" EXACT [] synonym: "tenth cranial nerve pharyngeal branch" EXACT [] synonym: "Vagal pharyngeal branch" EXACT [] synonym: "vagal pharyngeal branch" EXACT [] synonym: "Vagus nerve pharyngeal branch" EXACT [] synonym: "vagus nerve pharyngeal branch" EXACT [] xref: FMA:6234 is_a: UBERON:0001021 ! nerve is_a: UBERON:0003443 ! implied link automatically realized ! thoracic cavity nerve relationship: part_of UBERON:0001005 ! trachea relationship: part_of UBERON:0001759 ! vagus nerve [Term] id: UBERON:0000930 name: stomodeum alt_id: UBERON:FBbt_00000439-ZFA_0001290 def: "Wikipedia: Depression between the brain and the pericardium in an embryo, and is the precursor of the mouth and the anterior lobe of the pituitary gland." [Wikipedia:Stomodeum] subset: uberon_slim synonym: "stomatodeum" EXACT [Wikipedia:Stomodeum] xref: FBbt:00000439 xref: ncithesaurus:Stomodeum xref: ZFA:0001290 relationship: part_of UBERON:0001555 ! gut [Term] id: UBERON:0000931 name: proctodeum alt_id: UBERON:FBbt_00000440-WBbt_0006795 def: "The posterior part of the alimentary canal that is derived from the amnioproctodeal invagination of the ectoderm. // junction between the alimentary and genital tracts in the male." [FB:gg, WB:Paper00000462, Wikipedia:Proctodeum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FBbt:00000440 xref: HOG:0000139 xref: ncithesaurus:Proctodeum xref: WBbt:0006795 xref: XAO:0001019 is_a: UBERON:0000061 ! anatomical structure relationship: develops_from UBERON:0000924 ! ectoderm relationship: part_of UBERON:0001046 ! hindgut [Term] id: UBERON:0000932 name: ventral longitudinal muscle alt_id: UBERON:FBbt_00000482-WBbt_0005814 comment: This class was created automatically from a combination of ontologies xref: FBbt:00000482 xref: WBbt:0005814 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000990 ! reproductive system [Term] id: UBERON:0000933 name: pharyngeal muscle alt_id: UBERON:FBbt_00000487-FMA_46619-MA_0001797 def: "A muscle that forms part of the pharynx." [GO:0043282] comment: TODO: this is probably an inappropriate grouping term. In drosophila this is a cell. In mammals an organ. synonym: "Muscle of pharynx" EXACT [] synonym: "muscle of pharynx" EXACT [] synonym: "Pharyngeal muscle" EXACT [] synonym: "pharynx muscle" EXACT [] xref: BTO:0001048 xref: FBbt:00000487 xref: FMA:46619 xref: GAID:154 xref: MA:0001797 xref: ncithesaurus:Pharyngeal_Muscle is_a: UBERON:0002377 ! muscle of neck is_a: UBERON:0003831 ! implied link automatically realized ! respiratory system muscle intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001042 ! pharynx relationship: part_of UBERON:0001042 ! pharynx [Term] id: UBERON:0000934 name: ventral nerve cord alt_id: UBERON:FBbt_00001102-MIAA_0000339-WBbt_0005829 def: "a large process bundle that runs along the vental mid-line extending from the ventral region of the nerve ring." [WB:Paper00000938, Wikipedia:Ventral_nerve_cord] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ventral cord" RELATED [] xref: BTO:0002328 xref: EFO:0000896 xref: FBbt:00001102 xref: MAT:0000339 xref: MIAA:0000339 xref: WBbt:0005829 is_a: UBERON:0000045 ! ganglion [Term] id: UBERON:0000935 name: anterior commissure alt_id: UBERON:FBbt_00001105-FMA_61961-MA_0002722-ZFA_0001108 def: "bundle of nerve fibers (white matter), connecting the two cerebral hemispheres across the midline, and placed in front of the columns of the fornix. The great majority of fibers connecting the two hemispheres travel through the corpus callosum, which is over 10 times larger than the anterior commissure, and other routes of communication pass through the hippocampal commissure or, indirectly, via subcortical connections. Nevertheless, the anterior commissure is a significant pathway that can be clearly distinguished in the brains of all mammals." [Wikipedia:Anterior_commissure] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anterior commissure" EXACT [] synonym: "commissura anterior" RELATED [] synonym: "commissura rostral" RELATED [] synonym: "Commissura rostralis" EXACT [] synonym: "commissura rostralis" EXACT [] synonym: "precommisure" RELATED [Wikipedia:Anterior_commisure] synonym: "rostral commissure" RELATED [] xref: BTO:0002169 xref: FMA:61961 xref: MA:0002722 xref: ncithesaurus:Anterior_Commissure xref: TAO:0001108 xref: ZFA:0001108 is_a: UBERON:0002473 ! intercerebral commissure [Term] id: UBERON:0000936 name: posterior commissure alt_id: UBERON:FBbt_00001120-FMA_62072-MA_0002743-ZFA_0000320 def: "Rounded band of white fibers crossing the middle line on the dorsal aspect of the upper end of the cerebral aqueduct. It is important in the bilateral pupillary light reflex." [Wikipedia:Posterior_commissure] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Caudal commissure" EXACT [] synonym: "caudal commissure" EXACT [] synonym: "Epithalamic commissure" EXACT [] synonym: "epithalamic commissure" EXACT [] synonym: "Posterior commissure" EXACT [] xref: FMA:62072 xref: MA:0002743 xref: ncithesaurus:Posterior_Commissure xref: NIF_GrossAnatomy:birnlex_1026 xref: TAO:0000320 xref: ZFA:0000320 is_a: UBERON:0001020 ! commissure is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0000934 ! ventral nerve cord relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:0000937 name: proneural cluster alt_id: UBERON:FBbt_00001135-ZFA_0000068 synonym: "proneural clusters" RELATED [ZFA:0000068] xref: FBbt:00001135 xref: ZFA:0000068 relationship: part_of UBERON:0003075 ! neural plate [Term] id: UBERON:0000939 name: imaginal disc alt_id: UBERON:FBbt_00001761-MIAA_0000064 def: "A tissue in the larva which gives rise to the adult external cuticle." [FB:gg, Wikipedia:Imaginal_disc] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "imaginal disk" RELATED [] xref: FBbt:00001761 xref: MAT:0000064 xref: MIAA:0000064 is_a: UBERON:0000481 ! multi-tissue structure [Term] id: UBERON:0000941 name: optic nerve alt_id: UBERON:FBbt_00001956-FMA_50863-MA_0001097-XAO_0000188-ZFA_0000435 def: "Nerve trunk which is continuous with the retina and the optic chiasm. // Cranial nerve that runs to the eye. // Cranial nerve which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. // transmits visual information from the retina to the brain." [ISBN:0471209627, Wikipedia:Optic_nerve, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "CN-II" RELATED [] synonym: "cranial nerve II" RELATED [] synonym: "optic" RELATED [] synonym: "optic II nerve" EXACT [] synonym: "optic ii nerve" EXACT [] synonym: "Optic nerve" EXACT [] synonym: "Optic nerve [II]" EXACT [] synonym: "optic nerve [ii]" EXACT [] synonym: "Second cranial nerve" EXACT [] synonym: "second cranial nerve" EXACT [] xref: BTO:0000966 xref: EHDAA:6788 xref: FBbt:00001956 xref: FMA:50863 xref: GAID:831 xref: HOG:0000543 xref: MA:0001097 xref: ncithesaurus:Optic_Nerve xref: NIF_GrossAnatomy:birnlex_1640 xref: OpenCyc:Mx4rvVjLm5wpEbGdrcN5Y29ycA xref: TAO:0000435 xref: XAO:0000188 xref: ZFA:0000435 is_a: UBERON:0001785 ! cranial nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0000970 ! eye relationship: continuous_with UBERON:0000966 ! retina relationship: part_of UBERON:0000970 ! eye [Term] id: UBERON:0000942 name: frontal nerve alt_id: UBERON:FBbt_00002630-FMA_52638 def: "." [Wikipedia:Frontal_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Frontal nerve" EXACT [] xref: FBbt:00002630 xref: FMA:52638 xref: ncithesaurus:Frontal_Nerve is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0000943 name: labial sensillum alt_id: UBERON:FBbt_00002721-WBbt_0005107 def: "sensillum of inner or outer labial." [WB:rynl] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FBbt:00002721 xref: WBbt:0005107 is_a: UBERON:0002536 ! arthropod sensillum [Term] id: UBERON:0000944 name: dorsal branch alt_id: UBERON:FBbt_00003051-FMA_76733 comment: This class was created automatically from a combination of ontologies synonym: "Dorsal branch" EXACT [] synonym: "Dorsal vein" EXACT [] synonym: "dorsal vein" EXACT [] xref: FBbt:00003051 xref: FMA:76733 is_a: UBERON:0001005 ! trachea [Term] id: UBERON:0000945 name: stomach alt_id: UBERON:FBbt_00003138-FMA_7148-MA_0000353-MIAA_0000051-XAO_0000128 def: "The middle region of the alimentary canal, the epithelium of which is lined with peritrophic membrane (not chitinous intima as for the foregut and hindgut. // Organ with organ cavity which is continuous proximally with the esophagus and distally with the small intestine. Examples: There is only one stomach. // Internal organ that is the dilated portion of the alimentary tract situated between the esophagus and the beginning of the duodenum. It produces gastric juices involved in the breakdown of food." [FB:FBrf0007735, OMD:stomach, Wikipedia:Stomach] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "anterior intestine" RELATED [] synonym: "mesenteron" RELATED [] synonym: "Stomach" EXACT [] synonym: "stomach" RELATED [] synonym: "ventriculus" EXACT [] xref: AAO:0000579 xref: BTO:0001307 xref: EFO:0000837 xref: EHDAA:2993 xref: FMA:7148 xref: GAID:293 xref: HOG:0000408 xref: MA:0000353 xref: MAT:0000051 xref: MIAA:0000051 xref: ncithesaurus:Stomach xref: OpenCyc:Mx4rvVjlqpwpEbGdrcN5Y29ycA xref: XAO:0000128 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001041 ! foregut [Term] id: UBERON:0000946 name: cardial valve alt_id: UBERON:FBbt_00003140-FMA_7110-MA_0000086-ZFA_0005065 def: "A deep fold in the foregut epithelium enclosed by the ventricular wall which makes up the outer layer of the cardia. The space between the two layers of this fold is filled with longitudinal muscle fibers. The stomodeal intima continues over both layers. The cells of the epithelium are cuboidal to columnar and are vacuolate. // Anatomical valve which has as its parts the endocardium and fibroelastic connective tissue attached to the fibrous ring of heart." [FB:FBrf007735, Wikipedia:Cardiac_valve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cardiac valve" EXACT [] synonym: "cardiac valve" RELATED [] synonym: "Heart valve" EXACT [] synonym: "heart valve" EXACT [] synonym: "heart valves" RELATED [] synonym: "stomodaeal valve" RELATED [] synonym: "Valve of heart" EXACT [] synonym: "valve of heart" EXACT [] xref: BTO:0000564 xref: FBbt:00003140 xref: FMA:7110 xref: GAID:176 xref: galen:HeartValve xref: HOG:0000818 xref: MA:0000086 xref: ncithesaurus:Cardiac_Valve xref: OpenCyc:Mx4rv8oyuJwpEbGdrcN5Y29ycA xref: TAO:0005065 xref: ZFA:0005065 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0000947 name: aorta alt_id: UBERON:FBbt_00003153-FMA_3734-MA_0000062-MA_0000476-MIAA_0000035-XAO_0003010-ZFA_0000014 def: "Artery carrying blood from the heart to all the organs and other structures of the body, bringing oxygenated blood to all parts of the body in the systemic circulation" [Wikipedia:Aorta] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "adult aorta" EXACT [] synonym: "Aorta" EXACT [] synonym: "DA" RELATED [] synonym: "dorsal aorta" EXACT [] synonym: "Trunk of aortic tree" EXACT [] synonym: "trunk of aortic tree" EXACT [] synonym: "Trunk of systemic arterial tree" EXACT [] synonym: "trunk of systemic arterial tree" EXACT [] xref: BTO:0000135 xref: EFO:0000265 xref: EHDAA:402 xref: FBbt:00003153 xref: FMA:3734 xref: GAID:469 xref: galen:Aorta xref: HOG:0000264 xref: MA:0000062 xref: MA:0000476 xref: MAT:0000035 xref: MIAA:0000035 xref: ncithesaurus:Aorta xref: OpenCyc:Mx4rvVjvTpwpEbGdrcN5Y29ycA xref: TAO:0000014 xref: XAO:0003010 xref: ZFA:0000014 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0000948 name: heart alt_id: UBERON:FBbt_00003154-FMA_7088-MA_0000072-MIAA_0000036-XAO_0000064-ZFA_0000114 def: "A hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood[GO]." [GO:0007507] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Heart" EXACT [] synonym: "heart" EXACT [] xref: BILA:0000020 xref: BTO:0000562 xref: EFO:0000815 xref: EHDAA:420 xref: FBbt:00003154 xref: FMA:7088 xref: GAID:174 xref: galen:Heart xref: HOG:0000276 xref: MA:0000072 xref: MAT:0000036 xref: MIAA:0000036 xref: ncithesaurus:Heart xref: OpenCyc:Mx4rvVjvDpwpEbGdrcN5Y29ycA xref: TAO:0000114 xref: XAO:0000064 xref: ZFA:0000114 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002075 ! viscus relationship: part_of UBERON:0001009 ! circulatory system relationship: part_of UBERON:0002323 ! body cavity [Term] id: UBERON:0000949 name: endocrine system alt_id: UBERON:FBbt_00003214-FBbt_00005068-FMA_9668-MA_0000012-XAO_0000158-ZFA_0001158 def: "Anatomical system that consists of the glands and parts of glands that produce endocrine secretions and help to integrate and control bodily metabolic activity." [NLM:endocrine+system, Wikipedia:Endocrine_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Endocrine system" EXACT [] synonym: "endocrine system" EXACT [] synonym: "exocrine system" BROAD [] synonym: "Systema endocrinum" EXACT [] synonym: "systema endocrinum" EXACT [] xref: FBbt:00003214 xref: FBbt:00005068 xref: FMA:9668 xref: GAID:439 xref: HOG:0000098 xref: MA:0000012 xref: ncithesaurus:Endocrine_System xref: TAO:0001158 xref: XAO:0000158 xref: ZFA:0001158 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system [Term] id: UBERON:0000950 name: gracilis alt_id: UBERON:FBbt_00003277-FMA_43882-MA_0002311 def: "The most superficial muscle on the medial side of the thigh. It is thin and flattened, broad above, narrow and tapering below. It arises by a thin aponeurosis from the anterior margins of the lower half of the symphysis pubis and the upper half of the pubic arch." [Wikipedia:Gracilis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "gracilis muscle" EXACT [] xref: BTO:0000536 xref: FMA:43882 xref: galen:Gracilis xref: MA:0002311 xref: ncithesaurus:Gracilis is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0000951 name: rotator muscle alt_id: UBERON:FBbt_00003314-FMA_23081 comment: This class was created automatically from a combination of ontologies synonym: "Rotator muscle" EXACT [] xref: FMA:23081 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0000952 name: adductor muscle alt_id: UBERON:FBbt_00003317-FMA_74998 def: "Muscle that causes adduction can be called an adductor muscle. For example in biology, the muscle or muscles in the interior of a bivalve mollusk which serve to close the valves are called adductor muscles, and the large foot to shell muscle in gastropods such as the abalone and limpet is also known as an adductor muscle." [Wikipedia:Adductor_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Adductor muscle" EXACT [] synonym: "Adductor muscle of hip" NARROW [] xref: FBbt:00003317 xref: FMA:74998 xref: ZFA:0005268 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0000953 name: visceral muscle alt_id: UBERON:FBbt_00003525-MIAA_0000303-XAO_0000175 def: "." [Wikipedia:Smooth_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "adult visceral muscle" RELATED [] synonym: "smooth muscle" EXACT [] xref: BTO:0001260 xref: EFO:0000889 xref: FBbt:00003525 xref: GAID:167 xref: HOG:0001246 xref: MAT:0000303 xref: MIAA:0000303 xref: WBbt:0005781 xref: XAO:0000175 xref: ZFA:0005274 is_a: UBERON:0001630 ! muscle organ relationship: develops_from UBERON:0003081 ! lateral plate mesoderm [Term] id: UBERON:0000954 name: intestine muscle alt_id: UBERON:FBbt_00003537-WBbt_0005796 def: "intestinal muscle cell, attach to intestine and body wall anterior to anus" [WB:Paper00000653] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "intestinal muscle" EXACT [] xref: BTO:0000643 xref: FBbt:00003537 xref: WBbt:0005796 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000953 ! visceral muscle is_a: UBERON:0002378 ! implied link automatically realized ! muscle of abdomen relationship: part_of UBERON:0000160 ! intestine [Term] id: UBERON:0000955 name: brain alt_id: UBERON:FBbt_00003624-FBbt_00005095-FMA_50801-MA_0000168-MIAA_0000098-MIAA_0000341-WBbt_0005440-XAO_0000010-ZFA_0000008 def: "The supra-esophageal ganglion of the central nervous system, composed of three primitive ganglia known as protocerebrum, deutocerebrum and tritocerebrum. In the context of Drosophila refers to the preoral ganglionic mass of the central nervous system containing the ventral ganglia. // Organ component of neuraxis that has as its parts gray matter and white matter that surround the cerebral ventricular system; Examples: There is only one brain. // Organ that is a component of the central nervous system and is responsible for the coordination and control of bodily activities and the interpretation of information from the senses. It appears when the neural tube segregates in forebrain, midbrain, and hindbrain at NF stage 22. The general pattern of the brain has been mainly established at NF stage 28. Yolky material is consumed and the fibre tracts and later the commissures develop. In general all of its parts are well developed at NF stage 53 and later development consists mainly of growth and some further cytological differentiation. In the period of metamorphosis only topographical changes take place." [FB:gg, ISBN:0815318960, ISBN:3110148986, OMD:brain, Wikipedia:Brain] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Brain" EXACT [] synonym: "brain" EXACT [] synonym: "central nervous system" RELATED [] synonym: "synganglion" RELATED [] xref: BILA:0000135 xref: BTO:0000142 xref: EFO:0000302 xref: EHDAA:2641 xref: EHDAA:6485 xref: FBbt:00003624 xref: FBbt:00005095 xref: FMA:50801 xref: GAID:571 xref: galen:Brain xref: HOG:0000157 xref: MA:0000168 xref: MAT:0000098 xref: MIAA:0000098 xref: ncithesaurus:Brain xref: NIF_GrossAnatomy:birnlex_796 xref: OpenCyc:Mx4rvVjT65wpEbGdrcN5Y29ycA xref: TAO:0000008 xref: XAO:0000010 xref: ZFA:0000008 is_a: UBERON:0000489 ! cavitated compound organ relationship: develops_from UBERON:0001049 ! neural tube relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0000956 name: cerebral cortex alt_id: UBERON:FBbt_00003625-FMA_61830-MA_0000185-MIAA_0000108 def: "." [Wikipedia:Cerebral_cortex] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cerebral cortex" EXACT [] synonym: "Cortex of cerebral hemisphere" EXACT [] synonym: "cortex of cerebral hemisphere" EXACT [] xref: BTO:0000233 xref: EFO:0000328 xref: EHDAA:5464 xref: FBbt:00003625 xref: FMA:61830 xref: GAID:629 xref: HOG:0000722 xref: MA:0000185 xref: MAT:0000108 xref: MIAA:0000108 xref: ncithesaurus:Cortex xref: NIF_GrossAnatomy:birnlex_1494 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0000957 name: lamina alt_id: UBERON:FBbt_00003708-FMA_67265 def: "Any thin layer or plate. In the context of Drosophila refers to the first optic neuropil." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Lamina] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "La" RELATED [] synonym: "Lamin A" EXACT [] synonym: "lamin a" EXACT [] xref: FBbt:00003708 xref: FMA:67265 is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0000958 name: medulla alt_id: UBERON:FBbt_00003748-FMA_61108 def: "Middle part of an organ (as opposed to the cortex)[WP]." [Wikipedia:Medulla] comment: This class is used in a very general sense subset: uberon_slim synonym: "Medulla" EXACT [] xref: FMA:61108 is_a: UBERON:0000471 ! compound organ component relationship: surrounded_by UBERON:0001851 ! cortex [Term] id: UBERON:0000959 name: optic chiasma alt_id: UBERON:FBbt_00003921-FMA_62045-MA_0001098-ZFA_0000556 def: "The projection of axons between the lamina and medulla (1st optric chiasma) or between the medulla and lobula (2nd optic chiasma). The linear order of axons along each horizontal row of retinotopic columns (see optic cartridges) is reversed by the chiasma. // Nerve trunk which is continuous with right and left optic nerves and right and left optic tracts. // Decussation of cranial nerve II axons whereby some cross the midline and some remain ipsilateral." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Optic_chiasma, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Decussation of optic nerve fibers" EXACT [] synonym: "decussation of optic nerve fibers" EXACT [] synonym: "Optic chiasm" EXACT [] synonym: "optic chiasm" EXACT [] synonym: "Optic chiasma" EXACT [] xref: EHDAA:10227 xref: FBbt:00003921 xref: FMA:62045 xref: GAID:832 xref: HOG:0000190 xref: MA:0001098 xref: NIF_GrossAnatomy:birnlex_1416 xref: TAO:0000556 xref: ZFA:0000556 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0000941 ! optic nerve relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0000960 name: pharyngeal nerve alt_id: UBERON:FBbt_00004021-FMA_77524-WBbt_0005441 def: "." [Wikipedia:Pharyngeal_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pharyngeal nerve" EXACT [] xref: FBbt:00004021 xref: FMA:77524 xref: WBbt:0005441 is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001042 ! pharynx [Term] id: UBERON:0000961 name: thoracic ganglion alt_id: UBERON:FBbt_00004052-FMA_6471-MA_0001159 def: "." [Wikipedia:Thoracic_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Thoracic ganglion" EXACT [] synonym: "Thoracic paravertebral ganglion" EXACT [] synonym: "thoracic paravertebral ganglion" EXACT [] synonym: "Thoracic splanchnic ganglion" EXACT [] synonym: "thoracic splanchnic ganglion" EXACT [] synonym: "Thoracic sympathetic ganglion" EXACT [] synonym: "thoracic sympathetic ganglion" EXACT [] xref: BTO:0001831 xref: FBbt:00004052 xref: FMA:6471 xref: HOG:0000515 xref: MA:0001159 xref: ncithesaurus:Thoracic_Ganglion is_a: UBERON:0001807 ! paravertebral ganglion is_a: UBERON:0003339 ! implied link automatically realized ! ganglion of central nervous system intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0000915 ! thorax relationship: part_of UBERON:0000915 ! thorax relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0000962 name: cervical nerve alt_id: UBERON:FBbt_00004053-FMA_5859 def: "." [Wikipedia:Cervical_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cervical nerve" EXACT [] synonym: "Cervical nerve tree" EXACT [] synonym: "cervical nerve tree" EXACT [] synonym: "Cervical spinal nerve" EXACT [] synonym: "cervical spinal nerve" EXACT [] xref: FBbt:00004053 xref: FMA:5859 xref: ncithesaurus:Cervical_Nerve is_a: UBERON:0001780 ! spinal nerve is_a: UBERON:0003266 ! implied link automatically realized ! nerve of central nervous system is_a: UBERON:0003444 ! implied link automatically realized ! pelvis nerve is_a: UBERON:0003824 ! implied link automatically realized ! thoracic segment nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0000002 ! cervix relationship: part_of UBERON:0000961 ! thoracic ganglion [Term] id: UBERON:0000963 name: head sensillum alt_id: UBERON:FBbt_00004114-MIAA_0000204 comment: This class was created automatically from a combination of ontologies xref: FBbt:00004114 xref: MAT:0000204 xref: MIAA:0000204 is_a: UBERON:0002536 ! arthropod sensillum [Term] id: UBERON:0000964 name: cornea alt_id: UBERON:FBbt_00004191-FMA_58238-MA_0000266-XAO_0000180-ZFA_0000640 def: "transparent front part of the eye that covers the iris, pupil, and anterior chamber. Together with the lens, the cornea refracts light, accounting for approximately two-thirds of the eye's total optical power." [Wikipedia:Cornea] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cornea" EXACT [] synonym: "tunica cornea" RELATED [] xref: BTO:0000286 xref: EFO:0000377 xref: EHDAA:10199 xref: FBbt:00004191 xref: FMA:58238 xref: GAID:892 xref: HOG:0000164 xref: MA:0000266 xref: ncithesaurus:Cornea xref: OpenCyc:Mx4rvViBa5wpEbGdrcN5Y29ycA xref: TAO:0000640 xref: XAO:0000180 xref: ZFA:0000640 is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0000965 ! lens [Term] id: UBERON:0000965 name: lens alt_id: UBERON:FBbt_00004199-FMA_58241-MA_0000275-MIAA_0000141-XAO_0000008-ZFA_0000035 def: "Transparent part of eye that helps to refract light to be focused on the retina." [Wikipedia:Lens_(anatomy)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "eye lens" EXACT [] synonym: "Lens" EXACT [] xref: BTO:0000723 xref: EHDAA:9057 xref: FMA:58241 xref: HOG:0000169 xref: MA:0000275 xref: MAT:0000141 xref: MIAA:0000141 xref: ncithesaurus:Crystalline_Lens xref: TAO:0000035 xref: XAO:0000008 xref: ZFA:0000035 is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0003073 ! lens placode relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0000966 name: retina alt_id: UBERON:FBbt_00004200-FMA_58301-MA_0000276-MIAA_0000142-XAO_0000009-ZFA_0000152 def: "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates. // The array of photoreceptors & the cells that support them in a compound eye. // Layer of wall of eyeball which is continuous with optic nerve. // Sensory membrane that lines the posterior chamber of the eye and functions as the immediate instrument of vision by receiving the image formed by the lens and converting it into chemical and nervous signals which reach the brain by way of the optic nerve. // The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995." [FB:ds, NLM:retina, Wikipedia:Retina, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Inner layer of eyeball" EXACT [] synonym: "inner layer of eyeball" EXACT [] synonym: "Retina" EXACT [] synonym: "Tunica interna of eyeball" EXACT [] synonym: "tunica interna of eyeball" EXACT [] xref: BTO:0001175 xref: EFO:0000832 xref: EHDAA:4757 xref: FBbt:00004200 xref: FMA:58301 xref: GAID:755 xref: HOG:0000229 xref: MA:0000276 xref: MAT:0000142 xref: MIAA:0000142 xref: ncithesaurus:Retina xref: NIF_GrossAnatomy:birnlex_1153 xref: NIF_GrossAnatomy:birnlex_1156 xref: OpenCyc:Mx4rvViTfpwpEbGdrcN5Y29ycA xref: TAO:0000152 xref: XAO:0000009 xref: ZFA:0000152 is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0003072 ! eye vesicle relationship: part_of UBERON:0001802 ! posterior segment of eyeball [Term] id: UBERON:0000967 name: adult thoracic sensillum alt_id: UBERON:FBbt_00004245-MIAA_0000205 comment: This class was created automatically from a combination of ontologies synonym: "thoracic sensillum" EXACT [] xref: FBbt:00004245 xref: MAT:0000205 xref: MIAA:0000205 is_a: UBERON:0002536 ! arthropod sensillum intersection_of: UBERON:0002536 ! arthropod sensillum intersection_of: part_of UBERON:0000915 ! thorax relationship: part_of UBERON:0000915 ! thorax [Term] id: UBERON:0000968 name: adult abdominal sensillum alt_id: UBERON:FBbt_00004461-MIAA_0000206 comment: This class was created automatically from a combination of ontologies synonym: "abdominal sensillum" EXACT [] xref: FBbt:00004461 xref: MAT:0000206 xref: MIAA:0000206 is_a: UBERON:0002536 ! arthropod sensillum intersection_of: UBERON:0002536 ! arthropod sensillum intersection_of: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0000969 name: suture alt_id: UBERON:FBbt_00004479-FMA_7493-MA_0001475 def: "The meeting line of two primary body plates, as a rule forming a furrow-like impression. // Fibrous joint in which the articulating bones or cartilages of the skull are connected by sutural ligaments (scant amount of collagenous dense connective tissue). Examples: sagittal suture, frontal suture." [ISBN:3110148986, Wikipedia:Suture] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Suture" EXACT [] xref: FBbt:00004479 xref: FMA:7493 xref: HAO:0000982 is_a: UBERON:0002209 ! fibrous joint [Term] id: UBERON:0000970 name: eye alt_id: UBERON:FBbt_00004508-FMA_54448-MA_0000261-MIAA_0000140-XAO_0000179-ZFA_0000107 def: "organ that detects light" [http://en.wikipedia.org/wiki/Eye, UBERON:cjm, Wikipedia:Eye] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Eye" EXACT [] synonym: "eyes" RELATED [] synonym: "visual apparatus" RELATED [] xref: BILA:0000017 xref: BTO:0000439 xref: EFO:0000827 xref: FMA:54448 xref: GAID:69 xref: HOG:0000275 xref: MAT:0000140 xref: MIAA:0000140 xref: ncithesaurus:Eye xref: NIF_GrossAnatomy:birnlex_1169 xref: OpenCyc:Mx4rvViTvpwpEbGdrcN5Y29ycA is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0002104 ! visual system [Term] id: UBERON:0000971 name: ommatidium alt_id: UBERON:FBbt_00004510-MIAA_0000143 def: "One of the small facets of the compound eye." [ISBN:3110148986, Wikipedia:Ommatidium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "omatidium" EXACT [] xref: BTO:0001922 xref: FBbt:00004510 xref: HAO:0000666 xref: MAT:0000143 xref: MIAA:0000143 is_a: UBERON:0002536 ! arthropod sensillum relationship: has_part UBERON:0000965 ! lens relationship: part_of UBERON:0000018 ! compound eye [Term] id: UBERON:0000972 name: antenna alt_id: UBERON:FBbt_00004511-MIAA_0000086 def: "The paired, usually multiple jointed, sensory organs articulating on the procephalic region of the head capsule; its highly versatile sensory structures are capable to detect the various environmental stimuli. In the context of Drosophila refers to they are the most anterior segmented sensory appendage of the head." [FB:gg, ISBN:3110148986, Wikipedia:Antenna] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0000074 xref: EFO:0000874 xref: FBbt:00004511 xref: HAO:0000101 xref: MAT:0000086 xref: MIAA:0000086 is_a: UBERON:0000026 ! appendage relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0000973 name: labrum alt_id: UBERON:FBbt_00004522-FMA_76808 is_obsolete: true [Term] id: UBERON:0000974 name: neck alt_id: UBERON:FBbt_00004550-FMA_7155-MA_0000024-MIAA_0000297 def: "Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck." [Wikipedia:Neck] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Neck" EXACT [] synonym: "Neck (volume)" EXACT [] synonym: "neck (volume)" EXACT [] xref: BTO:0000420 xref: EFO:0000967 xref: FBbt:00004550 xref: FMA:7155 xref: GAID:86 xref: MA:0000024 xref: MAT:0000297 xref: MIAA:0000297 xref: ncithesaurus:Neck is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0000975 name: vertebrate sternum alt_id: UBERON:FBbt_00004557-FMA_7485-MA_0001331 def: "Long flat bone shaped like a capital 'T' located in the center of the thorax (chest)." [ISBN:3110148986, Wikipedia:Sternum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "sternum" EXACT [] xref: AAO:0000765 xref: BTO:0001302 xref: FBbt:00004557 xref: FMA:7485 xref: GAID:246 xref: HAO:0000956 xref: HOG:0000856 xref: MA:0001331 xref: ncithesaurus:Sternum xref: OpenCyc:Mx4rvVjO6JwpEbGdrcN5Y29ycA is_a: UBERON:0001474 ! bone is_a: UBERON:0003827 ! implied link automatically realized ! thoracic segment bone relationship: part_of UBERON:0000915 ! thorax [Term] id: UBERON:0000976 name: postpronotum alt_id: UBERON:FBbt_00004562-FMA_13303-MA_0001356 def: "Long bone which is part of the arm." [Wikipedia:Humerus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "humeral callus" RELATED [] synonym: "Humerus" EXACT [] synonym: "humerus" RELATED [] synonym: "prescutal lobe" RELATED [] xref: AAO:0000679 xref: EFO:0001398 xref: FBbt:00004562 xref: FMA:13303 xref: GAID:183 xref: galen:Humerus xref: HOG:0001158 xref: MA:0001356 xref: ncithesaurus:Humerus is_a: UBERON:0001440 ! skeleton of upper limb relationship: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0000977 name: mesothoracic pleurum alt_id: UBERON:FBbt_00004591-FMA_9583-MA_0000433 def: "." [Wikipedia:Pleura] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pleura" EXACT [] synonym: "pleura" RELATED [] synonym: "Wall of pleural sac" EXACT [] synonym: "wall of pleural sac" EXACT [] xref: BTO:0001791 xref: EFO:0001980 xref: FBbt:00004591 xref: FMA:9583 xref: GAID:360 xref: HOG:0000394 xref: MA:0000433 xref: ncithesaurus:Pleural_Tissue xref: OpenCyc:Mx4rv3zwLZwpEbGdrcN5Y29ycA is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0002402 ! pleural cavity [Term] id: UBERON:0000978 name: leg alt_id: UBERON:FBbt_00004640-FMA_24979-MA_0000047-MIAA_0000095 def: "A leg is a limb on which an animal walks and stands (GO:0035110)." [GO:0035110, Wikipedia:Leg] comment: Functional grouping, currently encompasses vertebrate and insect legs subset: uberon_slim synonym: "Intermediate segment of free lower limb" NARROW [] synonym: "Leg" EXACT [] xref: BTO:0000721 xref: EFO:0001411 xref: EHDAA:5151 xref: EHDAA:6176 xref: EHDAA:8289 xref: FBbt:00004640 xref: FMA:24979 xref: GAID:49 xref: galen:Leg xref: HAO:0000494 xref: HOG:0000345 xref: MA:0000047 xref: MAT:0000095 xref: MIAA:0000095 xref: ncithesaurus:Leg xref: OpenCyc:Mx4rvViYzZwpEbGdrcN5Y29ycA is_a: UBERON:0002101 ! limb [Term] id: UBERON:0000979 name: tibia alt_id: UBERON:FBbt_00004642-FMA_24476-MA_0001361 def: "Larger and stronger of the two bones in the leg below the knee in vertebrates and connects the knee with the ankle bones." [Wikipedia:Tibia] comment: Does not include the tibia segment of the arthropod leg FBbt:00004642 subset: uberon_slim synonym: "shankbone" EXACT [Wikipedia:Tibia] synonym: "shinbone" EXACT [Wikipedia:Tibia] synonym: "Tibia" EXACT [] xref: AAO:0000890 xref: BTO:0001252 xref: FMA:24476 xref: GAID:204 xref: MA:0001361 xref: ncithesaurus:Tibia is_a: UBERON:0002495 ! long bone is_a: UBERON:0003608 ! implied link automatically realized ! hindlimb long bone relationship: part_of UBERON:0001441 ! skeleton of lower limb [Term] id: UBERON:0000980 name: trochanter alt_id: UBERON:FBbt_00004643-FMA_82513 def: "part of the thigh bone." [Wikipedia:Trochanter] comment: Excludes FBbt:00004643 HAO:0001034 subset: uberon_slim synonym: "Trochanter" EXACT [] xref: FMA:82513 xref: MA:0002821 xref: ncithesaurus:Trochanter is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0000981 name: femur alt_id: UBERON:FBbt_00004644-FMA_9611-MA_0001359 def: "The femur, or thigh bone, is the most proximal (closest to the body) bone of the leg in vertebrates capable of walking or jumping, such as most land mammals, birds, many reptiles such as lizards, and amphibians such as frogs. In vertebrates with four legs, the femur is found only in the rear legs. Some species of whales[1], snakes[2], and other non-walking vertebrates have vestigial femurs. One of the earliest known vertebrates to have a femur is the Eusthenopteron, a prehistoric lobe-finned fish from the Late Devonian period." [Wikipedia:Femur] comment: exlcudes FBbt:00004644. In invertebrates, the name femur is also given to the most proximal full-length jointed segment of the legs of some arthropods such as spiders. excludes HAO:0000327 subset: uberon_slim synonym: "Femur" EXACT [] synonym: "Thigh bone" EXACT [] synonym: "thigh bone" EXACT [] xref: AAO:0000889 xref: BTO:0001284 xref: EFO:0001396 xref: FMA:9611 xref: GAID:199 xref: galen:Femur xref: HOG:0001159 xref: MA:0001359 xref: ncithesaurus:Femur xref: OpenCyc:Mx4rvVjOJJwpEbGdrcN5Y29ycA is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0001441 ! skeleton of lower limb relationship: part_of UBERON:0001464 ! hip [Term] id: UBERON:0000982 name: joint alt_id: UBERON:FBbt_00004645-FMA_228659-FMA_7490-MA_0000319-MIAA_0000188-XAO_0000171-ZFA_0001596 def: "Heterogeneous cluster which consists of two or more adjacent bones or cartilages, parts of which are interconnected by organ parts that consist of various types of connective tissue. Together with other joints and bones, a joint constitutes the skeletal system. Examples: pubic symphysis, knee joint, temporomandibular joint. // The point of contact between elements of the skeleton. // Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue." [NLM:joint, Wikipedia:Joint, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Joint" EXACT [] synonym: "Set of all joints" EXACT [] synonym: "set of all joints" BROAD [] xref: BTO:0001686 xref: EFO:0000948 xref: FBbt:00004645 xref: FMA:7490 xref: GAID:102 xref: galen:Joint xref: HOG:0001276 xref: MA:0000319 xref: MAT:0000188 xref: MIAA:0000188 xref: ncithesaurus:Joint xref: OpenCyc:Mx4rvVjjdpwpEbGdrcN5Y29ycA xref: TAO:0000367 xref: XAO:0000171 xref: ZFA:0001596 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0000983 name: metatarsus alt_id: UBERON:FBbt_00004648-FMA_24997-MA_0000049 def: "Limb segment that consists of the long bones of the foot. The metatarsals are analogous to the metacarpal bones of the hand." [Wikipedia:Metatarsus] comment: excludes FBbt:00004648 subset: uberon_slim synonym: "Metatarsal part of foot" EXACT [] synonym: "metatarsal part of foot" EXACT [] synonym: "Metatarsal region" EXACT [] synonym: "metatarsal region" EXACT [] synonym: "Metatarsus" EXACT [] xref: FMA:24997 xref: GAID:43 xref: MA:0000049 xref: OpenCyc:Mx4rva_rBJwpEbGdrcN5Y29ycA xref: XAO:0003212 is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0000984 name: thoracic wing alt_id: UBERON:FBbt_00004729-MIAA_0000202 def: "A flight organ of the adult external thorax that is derived from a dorsal mesothoracic disc." [FB:gg] comment: TODO: review. hymenoptera thorax = fusion of thorax and mesosoma/metasoma subset: uberon_slim synonym: "adult mesothoracic wing" RELATED [] synonym: "adult metathoracic wing" RELATED [] xref: FBbt:00004729 xref: HAO:0001089 is_a: UBERON:0000023 ! wing intersection_of: UBERON:0000023 ! wing intersection_of: part_of UBERON:0000915 ! thorax relationship: develops_from UBERON:0000939 ! imaginal disc relationship: part_of UBERON:0000914 ! segment [Term] id: UBERON:0000985 name: axillary vein alt_id: UBERON:FBbt_00004754-FMA_13329-MA_0002084 def: "." [Wikipedia:Axillary_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Axillary vein" EXACT [] synonym: "subcostal vein" RELATED [] xref: FBbt:00004754 xref: FMA:13329 xref: GAID:527 xref: galen:AxillaryVein xref: MA:0002084 xref: ncithesaurus:Axillary_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003506 ! implied link automatically realized ! chest blood vessel is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel relationship: part_of UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0000987 name: haltere alt_id: UBERON:FBbt_00004783-MIAA_0000203 def: "The capitate stalk on both sides of the thorax having developed from the dorsal metathoracic wing-buds, it is freely movable and capable of vibration, representing the hind wing of Diptera; used for flight balance." [FB:gg, ISBN:3110148986, Wikipedia:Haltere] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "balancer organ" RELATED [] xref: EFO:0000886 xref: FBbt:00004783 xref: MAT:0000203 xref: MIAA:0000203 is_a: UBERON:0000026 ! appendage relationship: develops_from UBERON:0000939 ! imaginal disc relationship: part_of UBERON:0000914 ! segment [Term] id: UBERON:0000988 name: pons alt_id: UBERON:FBbt_00004840-FMA_67943-MA_0000204-MIAA_0000115-ZFA_0001618 def: "A bridge-like component of the male terminalia. // Organ component of neuraxis that has as its parts the pontine tegmentum and basal part of pons. Examples: There is only one pons." [FB:gg, Wikipedia:Pons] comment: TODO: check fly subset: uberon_slim synonym: "Pons" EXACT [] synonym: "Pons of Varolius" EXACT [] synonym: "pons of varolius" EXACT [] xref: BTO:0001101 xref: EFO:0001394 xref: FBbt:00004840 xref: FMA:67943 xref: GAID:578 xref: HOG:0001176 xref: MA:0000204 xref: MAT:0000115 xref: MIAA:0000115 xref: NIF_GrossAnatomy:birnlex_733 xref: ZFA:0001618 is_a: UBERON:0002680 ! regional part of metencephalon relationship: part_of UBERON:0001895 ! metencephalon relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:0000989 name: penis alt_id: UBERON:FBbt_00004852-FMA_9707-MA_0000408-MIAA_0000186 def: "." [Wikipedia:Penis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Penis" EXACT [] synonym: "phallus" RELATED [] xref: BTO:0000405 xref: EFO:0000987 xref: FBbt:00004852 xref: FMA:9707 xref: GAID:389 xref: HOG:0000727 xref: MA:0000408 xref: MAT:0000186 xref: MIAA:0000186 xref: ncithesaurus:Penis xref: OpenCyc:Mx4rvVjkCZwpEbGdrcN5Y29ycA is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0000079 ! male reproductive system [Term] id: UBERON:0000990 name: reproductive system alt_id: UBERON:FBbt_00004857-FMA_7160-MA_0000326-MIAA_0000305-WBbt_0005747-XAO_0000142-ZFA_0000632 def: "Anatomical system that has as its parts the organs concerned with reproduction." [NLM:genitourinary+tract, Wikipedia:Reproductive_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Genital system" RELATED [] synonym: "genital system" RELATED [] synonym: "genitalia" NARROW [] synonym: "Reproductive system" EXACT [] xref: BILA:0000103 xref: BTO:0000081 xref: EFO:0000809 xref: EHDAA:5923 xref: FBbt:00004826 xref: FBbt:00004857 xref: FMA:7160 xref: HAO:0000374 xref: HAO:0000895 xref: HOG:0000182 xref: MA:0000326 xref: MIAA:0000305 xref: ncithesaurus:Reproductive_System xref: OpenCyc:Mx4rvVja4ZwpEbGdrcN5Y29ycA xref: TAO:0000632 xref: WBbt:0005747 xref: XAO:0000142 xref: ZFA:0000632 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system relationship: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0000991 name: gonad alt_id: UBERON:FBbt_00004858-FMA_18250-MA_0002420-WBbt_0005175-XAO_0003146-ZFA_0000413 def: "organ that makes gametes [Wikipedia]. The organs of the reproductive system in which the germ cells reside. // General anatomical term which refers to ovary or testis. // organ producing either sperm or ova. // Reproductive organ that produces and releases eggs (ovary) or sperm (testis). // The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis)." [FB:gg, ISBN:0140512888, Wikipedia:Gonad, ZFA:0000413, ZFIN:curator] comment: FMA xref is a 'general anatomical term' subset: uberon_slim synonym: "Gonad" EXACT [] synonym: "Gonada" EXACT [] synonym: "gonada" EXACT [] xref: AAO:0000213 xref: BILA:0000123 xref: BTO:0000534 xref: FBbt:00004858 xref: FMA:18250 xref: GAID:368 xref: HAO:0000379 xref: HOG:0000397 xref: MA:0002420 xref: ncithesaurus:Gonad xref: TAO:0000413 xref: WBbt:0005175 xref: XAO:0003146 xref: ZFA:0000413 is_a: UBERON:0000489 ! cavitated compound organ relationship: part_of UBERON:0000990 ! reproductive system relationship: part_of UBERON:0002323 ! body cavity [Term] id: UBERON:0000992 name: ovary alt_id: UBERON:FBbt_00004865-FMA_7209-MA_0000384-MIAA_0000125-XAO_0000258-ZFA_0000403 def: "Reproductive organ that produces and releases eggs. // Female reproductive organ." [Wikipedia:Ovary, XB:curator, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ovaries" RELATED [] synonym: "Ovary" EXACT [] xref: AAO:0000371 xref: BILA:0000125 xref: BTO:0000975 xref: EHDAA:8124 xref: FBbt:00004865 xref: FMA:7209 xref: GAID:367 xref: HOG:0000251 xref: MA:0000384 xref: MIAA:0000125 xref: ncithesaurus:Ovary xref: OpenCyc:Mx4rvVi9QJwpEbGdrcN5Y29ycA xref: TAO:0000403 xref: XAO:0000258 xref: ZFA:0000403 is_a: UBERON:0000991 ! gonad relationship: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0000993 name: oviduct alt_id: UBERON:FBbt_00004911-FMA_18245-MA_0000385-MIAA_0000126-XAO_0003052-ZFA_0000560 def: "passage from the ovaries to the outside of the body[Wikipedia:Oviduct]." [Wikipedia:Oviduct] subset: uberon_slim synonym: "uterine tube" EXACT [] xref: BTO:0000980 xref: EFO:0000974 xref: FBbt:00004911 xref: GAID:366 xref: HOG:0001136 xref: MAT:0000126 xref: MIAA:0000126 xref: ncithesaurus:Fallopian_Tube xref: TAO:0000560 xref: XAO:0003052 xref: ZFA:0000560 is_a: UBERON:0000058 ! duct relationship: connects UBERON:0000992 ! ovary [Term] id: UBERON:0000994 name: spermathecum alt_id: UBERON:FBbt_00004921-MIAA_0000168-WBbt_0005319 def: "an accordion-like tube that contains sperm and is the site of oocyte fertilization." [WA:dh] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "seminal receptacle" RELATED [] synonym: "spermatheca" RELATED [] xref: EFO:0000977 xref: FBbt:00004921 xref: MAT:0000168 xref: MIAA:0000168 xref: WBbt:0005319 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000991 ! gonad relationship: part_of UBERON:0002537 ! hermaphrodite gonad [Term] id: UBERON:0000995 name: uterus alt_id: UBERON:FBbt_00004924-FMA_17558-MA_0000389-MIAA_0000127-WBbt_0006760 def: "Organ with organ cavity which is continuous proximally with the right and left uterine tubes and distally is connected to the vagina. Examples: There is only one uterus. // The organ in which the eggs are developed and protected until laid." [ISBN:0198611862, WB:rynl, Wikipedia:Uterus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "uterine horn" RELATED [] synonym: "uterine horns" RELATED [] synonym: "Uterus" EXACT [] xref: BTO:0001424 xref: EFO:0000975 xref: FBbt:00004924 xref: FMA:17558 xref: GAID:172 xref: HOG:0001137 xref: MA:0000389 xref: MAT:0000127 xref: MIAA:0000127 xref: ncithesaurus:Uterus xref: OpenCyc:Mx4rvViojJwpEbGdrcN5Y29ycA xref: WBbt:0006760 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0000991 ! gonad relationship: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0000996 name: vagina alt_id: UBERON:FBbt_00004925-FMA_19949-MA_0000394-MIAA_0000128 def: "Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina. Examples: There is only one vagina." [Wikipedia:Vagina] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Vagina" EXACT [] xref: BTO:0000243 xref: EFO:0000976 xref: FBbt:00004925 xref: FMA:19949 xref: GAID:381 xref: HOG:0001138 xref: MA:0000394 xref: MAT:0000128 xref: MIAA:0000128 xref: ncithesaurus:Vagina xref: OpenCyc:Mx4rvVj1B5wpEbGdrcN5Y29ycA is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0000474 ! female reproductive system [Term] id: UBERON:0000997 name: vulva alt_id: UBERON:FBbt_00004926-FMA_20462-FMA_225311-MA_0000395-MIAA_0000169-WBbt_0006748 def: "female genitalia" [WB:rynl, Wikipedia:Vulva] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Female pudendum" EXACT [] synonym: "female pudendum" EXACT [] synonym: "Puboperineal region" EXACT [] synonym: "puboperineal region" EXACT [] synonym: "Skin of female pudendum" EXACT [] synonym: "skin of female pudendum" EXACT [] synonym: "Skin of vulva" EXACT [] synonym: "skin of vulva" EXACT [] synonym: "Vulva" EXACT [] xref: BTO:0001055 xref: EFO:0000978 xref: FBbt:00004926 xref: FMA:20462 xref: GAID:383 xref: HAO:0001087 xref: HOG:0001458 xref: MA:0000395 xref: MAT:0000169 xref: MIAA:0000169 xref: ncithesaurus:Vulva xref: OpenCyc:Mx4rvgAWeJwpEbGdrcN5Y29ycA xref: WBbt:0006748 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0000998 name: seminal vesicle alt_id: UBERON:FBbt_00004958-FMA_19386-MA_0000410-MIAA_0000171-WBbt_0006870 def: "part of male gonad that holds mature sperm, made of a total of 12 nuclei." [WB:Paper00000193, WB:rynl, Wikipedia:Seminal_vesicle] comment: The mesonephros persists and form the permanent kidneys in fishes and amphibians, but in reptiles, birds, and mammals, it atrophies and for the most part disappears rapidly as the permanent kidney (metanephros) begins to develop during the sixth or seventh week. By the beginning of the fifth month only the ducts and a few of the tubules of the mesonephros remain. subset: uberon_slim synonym: "gon_male_sves" RELATED [] synonym: "Seminal gland" EXACT [] synonym: "seminal gland" EXACT [] synonym: "Seminal vesicle" EXACT [] synonym: "vas efferens" RELATED [] xref: BTO:0001234 xref: EFO:0000986 xref: FBbt:00004958 xref: FMA:19386 xref: GAID:394 xref: HOG:0001379 xref: MA:0000410 xref: MAT:0000171 xref: MIAA:0000171 xref: ncithesaurus:Seminal_Vesicle xref: WBbt:0006870 is_a: UBERON:0002530 ! gland relationship: develops_from UBERON:0000080 ! mesonephros relationship: part_of UBERON:0002117 ! testicle [Term] id: UBERON:0000999 name: ejaculatory duct alt_id: UBERON:FBbt_00004965-FMA_19325-MIAA_0000170 def: "." [Wikipedia:Ejaculatory_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ejaculatory duct" EXACT [] xref: BTO:0001580 xref: EFO:0000985 xref: FBbt:00004965 xref: FMA:19325 xref: GAID:388 xref: MAT:0000170 xref: MIAA:0000170 xref: ncithesaurus:Ejaculatory_Duct is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0000990 ! reproductive system [Term] id: UBERON:0001000 name: vas deferens alt_id: UBERON:FBbt_00004968-FMA_19234-MA_0000413-MIAA_0000129-WBbt_0005337 def: "duct that transports sperm. In mammals this is from the epididymis." [Wikipedia:Vas_deferens] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Deferent duct" EXACT [] synonym: "deferent duct" RELATED [] synonym: "ductus deferens" RELATED [Wikipedia:Vas_deferens] synonym: "sperm duct" RELATED [] synonym: "vas deferen" EXACT [] synonym: "Vas deferens" EXACT [] synonym: "vasa deferentia" RELATED [] xref: BTO:0001427 xref: EFO:0000981 xref: FBbt:00004968 xref: FMA:19234 xref: GAID:404 xref: HAO:0001052 xref: MA:0000413 xref: MIAA:0000129 xref: ncithesaurus:Vas_Deferens xref: WBbt:0005337 is_a: UBERON:0000058 ! duct [Term] id: UBERON:0001001 name: chitin-based cuticle alt_id: UBERON:FBbt_00004970 def: "The outer non-living layer of the integumentary system derived from the epidermis. The main structural component of arthropod cuticle is a polysaccharide, chitin, composed of N-acetylglucosamine units, together with proteins and lipids." [FB:gg, UBERON:cjm, Wikipedia:Exoskeleton] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "arthropod cuticle" RELATED [] synonym: "exoskeleton" EXACT [] synonym: "insect cuticle" RELATED [] xref: EFO:0000944 xref: FBbt:00004970 xref: MAT:0000150 xref: OpenCyc:Mx4rvVkBTJwpEbGdrcN5Y29ycA is_a: UBERON:0001002 ! cuticle [Term] id: UBERON:0001002 name: cuticle alt_id: UBERON:FBbt_00004970-MIAA_0000150-WBbt_0005755 def: "tough but flexible, non-mineral outer coverings of an organism, or parts of an organism, that provide protection. Cuticles are non-homologous, differing in their origin, structure and chemical composition. [Wikipedia]. The outer non-living layer of the integumentary system derived from the epidermis." [Wikipedia:Cuticle, Wikipedia:Eponychium] comment: TODO - check cuticle vs eponychium subset: uberon_slim xref: BTO:0001600 xref: FBbt:00004970 xref: FMA:77859 xref: HAO:0000240 xref: MA:0002704 xref: MIAA:0000150 is_a: UBERON:0000476 ! acellular anatomical structure relationship: develops_from UBERON:0001003 ! epidermis [Term] id: UBERON:0001003 name: epidermis alt_id: UBERON:FBbt_00004993-FBbt_00005401-FMA_70596-MA_0000153-MIAA_0000154-WBbt_0005733-XAO_0000028-ZFA_0000105 def: "Outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species[GO]. A cellular, multilayered epithelium derived from the ectoderm[ZFA]." [BTO:0000404, GO:0008544, Wikipedia:Epidermis, ZFIN:curator] comment: Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. Epidermis, in invertebrates, the outermost layers of skin of up to 30 layers of stratified squamous epithelium. subset: uberon_slim synonym: "adult epidermis" EXACT [] synonym: "Epidermis" EXACT [] synonym: "hypoderm" RELATED [] synonym: "hypodermis" RELATED [] synonym: "skin" BROAD [] xref: AAO:0000143 xref: BTO:0000404 xref: EFO:0000954 xref: FBbt:00004993 xref: FBbt:00005401 xref: FMA:70596 xref: GAID:932 xref: HAO:0000298 xref: HOG:0000077 xref: MA:0000153 xref: MAT:0000154 xref: MIAA:0000154 xref: ncithesaurus:Epidermis xref: TAO:0000105 xref: WBbt:0005733 xref: XAO:0000028 xref: ZFA:0000105 is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: surrounds UBERON:0000468 ! multi-cellular organism relationship: develops_from UBERON:0000924 ! ectoderm relationship: part_of UBERON:0002199 ! integument relationship: surrounds UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0001004 name: respiratory system alt_id: UBERON:FBbt_00005024-FMA_7158-MA_0000327-MIAA_0000030-XAO_0000117-ZFA_0000272 def: "Functional system which consists of structures involved in respiration. // Anatomical system that has as its parts the organs involved in breathing in respiration (breathing)." [FB:FBrf0064787, OMD:respiratory+apparatus, Wikipedia:Respiratory_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Apparatus respiratorius" EXACT [] synonym: "apparatus respiratorius" EXACT [] synonym: "Respiratory system" EXACT [] synonym: "respiratory system" EXACT [] xref: AAO:0000541 xref: BTO:0000203 xref: EFO:0000804 xref: EHDAA:2203 xref: FMA:7158 xref: GAID:78 xref: HOG:0000202 xref: MA:0000327 xref: MAT:0000030 xref: MIAA:0000030 xref: ncithesaurus:Respiratory_System xref: OpenCyc:Mx4rvVjzFJwpEbGdrcN5Y29ycA xref: TAO:0000272 xref: XAO:0000117 xref: ZFA:0000272 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system [Term] id: UBERON:0001005 name: trachea alt_id: UBERON:FBbt_00005043-FMA_7394-MA_0000441-MIAA_0000137-XAO_0000118 def: "An airway through which respiratory air passes in organisms." [Wikipedia:Trachea] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Trachea" EXACT [] synonym: "Windpipe" EXACT [] synonym: "windpipe" EXACT [] xref: BTO:0001388 xref: EFO:0000935 xref: EHDAA:3078 xref: FBbt:00005043 xref: FMA:7394 xref: GAID:361 xref: HOG:0000371 xref: MA:0000441 xref: MAT:0000137 xref: MIAA:0000137 xref: ncithesaurus:Trachea xref: OpenCyc:Mx4rvViOX5wpEbGdrcN5Y29ycA xref: XAO:0000118 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001004 ! respiratory system relationship: part_of UBERON:0001558 ! lower respiratory tract relationship: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0001006 name: spiracle alt_id: UBERON:FBbt_00005054-MIAA_0000208 def: "The mostly slit-like opening on the body surface through which air is taken into the respiratory system." [ISBN:3110148986, Wikipedia:Spiracle] comment: This class was created automatically from a combination of ontologies. In elasmobranchs (sharks and rays), a spiracle is found behind each eye, and is often used to pump water through the gills while the animal is at rest (Fouts, 2003). A spiracle is also found in primitive bony fishes as the chirrups. subset: uberon_slim synonym: "spiracular gland" RELATED [] xref: EFO:0000936 xref: FBbt:00005054 xref: HAO:0000950 xref: MAT:0000208 xref: MIAA:0000208 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0001007 name: digestive system alt_id: UBERON:FBbt_00005055-FMA_7152-MA_0000323-MIAA_0000018-WBbt_0005748-XAO_0000125-ZFA_0000339 def: "The organ system involved in the absorption of nutrients. // Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes." [FB:gg, NLM:alimentary+system, Wikipedia:Digestive_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Alimentary system" EXACT [] synonym: "alimentary system" RELATED [] synonym: "alimentary tract" RELATED [] synonym: "Digestive system" EXACT [] synonym: "gastrointestinal system" EXACT [] synonym: "gut" RELATED [] xref: AAO:0000129 xref: BILA:0000082 xref: EFO:0000793 xref: EHDAA:514 xref: FBbt:00005055 xref: FMA:7152 xref: GAID:278 xref: GAID:294 xref: galen:DigestiveSystem xref: HOG:0000412 xref: MA:0000323 xref: MAT:0000018 xref: MIAA:0000018 xref: ncithesaurus:Gastrointestinal_System xref: TAO:0000339 xref: WBbt:0005748 xref: XAO:0000125 xref: ZFA:0000339 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system [Term] id: UBERON:0001008 name: urinary system alt_id: UBERON:FBbt_00005056-FMA_7159-MIAA_0000027-WBbt_0005736-XAO_0000143-ZFA_0000163 def: "Anatomical system that has as its parts the organs concerned with the production and excretion of urine." [NLM:genitourinary+tract, Wikipedia:Excretory_system] comment: In various sources such as Encyclopedia Britannica, the excretory and urinary systems are indeed the same system (see wikipedia talk page) subset: uberon_slim synonym: "excretory system" EXACT [] synonym: "renal system" EXACT [] synonym: "renal/urinary system" RELATED [] synonym: "Systema urinaria" EXACT [] synonym: "systema urinaria" EXACT [] synonym: "Urinary system" EXACT [] synonym: "urinary system" RELATED [] xref: BILA:0000015 xref: BTO:0003092 xref: EFO:0000803 xref: FBbt:00005056 xref: FMA:7159 xref: GAID:391 xref: HOG:0000723 xref: MAT:0000027 xref: MIAA:0000027 xref: ncithesaurus:Urinary_System xref: TAO:0000163 xref: WBbt:0005736 xref: XAO:0000143 xref: ZFA:0000163 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system [Term] id: UBERON:0001009 name: circulatory system alt_id: UBERON:FBbt_00005057-FMA_7161-MA_0000010-MIAA_0000016-XAO_0000100-ZFA_0000010 def: "Organ system which consists of the heart, the systemic and pulmonary arterial and venous system, the lymphatic and the portal venous system. // Anatomical system that has as its parts the heart and blood vessels." [BTO:0000088, Wikipedia:Circulatory_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cardiovascular system" EXACT [] synonym: "cardiovascular system" EXACT [] xref: BILA:0000016 xref: BTO:0000088 xref: EFO:0000791 xref: EHDAA:394 xref: FBbt:00005057 xref: FMA:7161 xref: GAID:467 xref: HOG:0000302 xref: MA:0000010 xref: MAT:0000016 xref: MIAA:0000016 xref: ncithesaurus:Cardiovascular_System xref: OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA xref: TAO:0000010 xref: XAO:0000100 xref: ZFA:0000010 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system [Term] id: UBERON:0001011 name: hemolymph alt_id: UBERON:FBbt_00005061-MIAA_0000054 def: "Blood analogue used by all arthropods and most mollusks that have an open circulatory system. In these animals there is no distinction between blood and interstitial fluid. The liquid fills all of the interior (the hemocoel) of the body and surrounds all cells." [Wikipedia:Hemolymph] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "haemolymph" RELATED [] xref: BTO:0000572 xref: FBbt:00005061 xref: GAID:1220 xref: MAT:0000054 xref: MIAA:0000054 is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0002193 ! hemolymphoid system [Term] id: UBERON:0001013 name: adipose tissue alt_id: UBERON:FBbt_00005065-FMA_20110-MA_0000009-MIAA_0000015-XAO_0003049 def: "Dense irregular connective tissue, which predominantly consists of adipocytes. // Connective tissue in which fat is stored." [NLM:adipose+tissue, Wikipedia:Adipose_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "fat tissue" EXACT [] synonym: "fatty tissue" EXACT [] xref: AAO:0000001 xref: BTO:0001487 xref: EFO:0000234 xref: EFO:0000790 xref: FBbt:00005065 xref: FMA:20110 xref: GAID:920 xref: galen:FattyTissue xref: HOG:0001284 xref: MA:0000009 xref: MAT:0000015 xref: MIAA:0000015 xref: ncithesaurus:Adipose_Tissue xref: OpenCyc:Mx4rvVjc_ZwpEbGdrcN5Y29ycA xref: XAO:0003049 is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0001014 name: fat body alt_id: UBERON:FBbt_00005066-FMA_58616-MA_0002481-MIAA_0000096-XAO_0003050 synonym: "Fat pad" EXACT [] synonym: "fat pad" EXACT [] is_obsolete: true [Term] id: UBERON:0001015 name: muscle system alt_id: UBERON:FBbt_00005069-FMA_30316-FMA_32558-MA_0000015-MIAA_0000025-WBbt_0005737-XAO_0000172-ZFA_0000548-ZFA_0005145 def: "Anatomical system that allows the animal move, includes all muscles." [BTO:0000887, WB:rynl, Wikipedia:Muscular_system, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Muscle group" EXACT [] synonym: "muscle group" EXACT [] synonym: "Muscles" EXACT [] synonym: "muscles" RELATED [] synonym: "Muscles set" EXACT [] synonym: "muscles set" EXACT [] synonym: "muscular system" EXACT [] synonym: "musculature" EXACT [] synonym: "musculature system" RELATED [] synonym: "Set of muscles" EXACT [] synonym: "set of muscles" EXACT [] xref: BTO:0000887 xref: EFO:0001949 xref: FBbt:00005069 xref: FMA:32558 xref: HOG:0001245 xref: MA:0002888 xref: MAT:0000025 xref: MIAA:0000025 xref: ncithesaurus:Muscle xref: TAO:0000548 xref: WBbt:0005737 xref: ZFA:0000548 is_a: UBERON:0000467 ! anatomical system relationship: part_of UBERON:0002204 ! musculoskeletal system [Term] id: UBERON:0001016 name: nervous system alt_id: UBERON:FBbt_00005093-FMA_7157-MA_0000016-MIAA_0000026-WBbt_0005735-XAO_0000177-ZFA_0000396 def: "a network of specialized cells that communicate information about an organism's surroundings and itself[Wikipedia]." [ISBN:0-14-051288-8, ISBN:3110148986, NLM:nervous+system, WB:rynl, Wikipedia:Nervous_system, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "nerve net" NARROW [Wikipedia:Nerve_net "Nerve nets consist of interconnected neurons lacking a brain or any form of cephalization."] synonym: "Nervous system" EXACT [] xref: AAO:0000324 xref: BILA:0000079 xref: BTO:0001484 xref: EFO:0000802 xref: EHDAA:826 xref: FBbt:00005093 xref: FMA:7157 xref: GAID:466 xref: HOG:0000402 xref: MA:0000016 xref: MAT:0000026 xref: MIAA:0000026 xref: ncithesaurus:Nervous_System xref: NIF_GrossAnatomy:birnlex_844 xref: OpenCyc:Mx4rvViT_pwpEbGdrcN5Y29ycA xref: TAO:0000396 xref: WBbt:0005735 xref: XAO:0000177 xref: ZFA:0000396 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system relationship: develops_from UBERON:0000924 ! ectoderm [Term] id: UBERON:0001017 name: central nervous system alt_id: UBERON:FBbt_00005094-FMA_55675-MA_0000167-XAO_0000215-ZFA_0000012 def: "The part of the nervous system which consists of the brain and spinal cord, to which sensory impulses are transmitted and from which motor impulses pass out, and which supervises and coordinates the activity of the entire nervous system[XAO]. Organ with organ cavity which consists of gray matter and white matter[FMA]. The brain and spinal cord[ZFA]." [FB:gg, ISBN:3110148986, NLM:central+nervous+system, Wikipedia:Central_nervous_system, ZFIN:curator] subset: uberon_slim synonym: "Central nervous system" EXACT [] synonym: "CNS" RELATED [] synonym: "cns" RELATED [] synonym: "Neuraxis" EXACT [] synonym: "neuraxis" EXACT [] xref: AAO:0000090 xref: BILA:0000080 xref: BTO:0000227 xref: EFO:0000908 xref: EHDAA:828 xref: FBbt:00005094 xref: FMA:55675 xref: GAID:570 xref: HOG:0000293 xref: MA:0000167 xref: MAT:0000457 xref: ncithesaurus:Central_Nervous_System xref: NIF_GrossAnatomy:birnlex_1099 xref: TAO:0000012 xref: XAO:0000215 xref: ZFA:0000012 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001018 name: axon tract alt_id: UBERON:FBbt_00005100-FMA_76739 def: "A group of axons linking two or more neuropils and having a common origin, termination." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: This class was created automatically from a combination of ontologies synonym: "Tract" EXACT [] synonym: "tract" EXACT [] xref: FBbt:00005100 xref: FMA:76739 is_a: UBERON:0000122 ! nerve fiber bundle [Term] id: UBERON:0001019 name: fascicle alt_id: UBERON:FBbt_00005101-FMA_76740 def: "A slender bundle of axons linking one neuropil to another." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Fascicle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Fascicle" EXACT [] synonym: "Fasciculus" EXACT [] synonym: "fasciculus" EXACT [] synonym: "nerve fasciculus" EXACT [FMA:12235] xref: FBbt:00005101 xref: FMA:12235 xref: ncithesaurus:Fascicle xref: NIF_GrossAnatomy:birnlex_872 is_a: UBERON:0000122 ! nerve fiber bundle [Term] id: UBERON:0001020 name: commissure alt_id: UBERON:FBbt_00005103-FMA_76741 def: "The transverse connection between two longitudinal parts, e.g. nerves, tracheae. In the context of Drosophila refers to a broad band of axons connecting the same neuropils each side of the brain." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, ISBN:3110148986, Wikipedia:Commissure] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Commissure" EXACT [] xref: FBbt:00005103 xref: FMA:83906 xref: ncithesaurus:Commissure xref: OpenCyc:Mx4rdBrmE6gOEdudWQACs5b6Bw is_a: UBERON:0001018 ! axon tract [Term] id: UBERON:0001021 name: nerve alt_id: UBERON:FBbt_00005099-FMA_5914 alt_id: UBERON:FBbt_00005105-FMA_65132-MA_0000217-XAO_0003047-ZFA_0007009 def: "an enclosed, cable-like bundle of peripheral axons [wikipedia]. A portion of tissue which is a fasiculated group of axons[ZFA]." [Wikipedia:Nerve, ZFA:0007009, ZFIN:curator] comment: TODO - nerve fiber. TODO - nerve in FMA, neural tree organ vs nerve. See also UBERON:0003714 portion of nerve tissue - ZFA refers to this? subset: uberon_slim synonym: "Nerve" EXACT [] synonym: "nerve fiber" RELATED [] synonym: "neural subtree" RELATED [] synonym: "neurofibrum" RELATED [] xref: BTO:0000925 xref: EHDAA:2851 xref: EHDAA:3776 xref: EHDAA:4657 xref: FBbt:00005105 xref: FMA:61284 xref: FMA:65132 xref: GAID:758 xref: MA:0000217 xref: ncithesaurus:Nerve xref: TAO:0007009 xref: XAO:0003047 xref: ZFA:0007009 is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001022 name: cell body alt_id: UBERON:FBbt_00005107-FMA_67301 def: "The cell body of a neuron. // Cell component which consists of the plasma membrane and the cytoplasm surrounding the nucleus." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Cell_body] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cell body" EXACT [] synonym: "Cell soma" EXACT [] synonym: "cell soma" EXACT [] synonym: "soma" RELATED [] xref: FBbt:00005107 xref: FMA:67301 xref: GO:0043025 is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0001023 name: dendrite alt_id: UBERON:FBbt_00005110-FMA_67314 def: "The region of a neuron receiving inputs from other neurons, typically a slender neurite, often branched. In insect neurons, this is often not a clear designation and often presynaptic sites co-extend with postsynaptic ones. // Cell appendage of a neuron that consists of the dendrite proper and the dendritic spines." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Dendrite] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Dendrite" EXACT [] xref: FBbt:00005110 xref: FMA:67314 xref: GAID:749 xref: GO:0030425 xref: ncithesaurus:Dendrite is_a: UBERON:0001024 ! neurite [Term] id: UBERON:0001024 name: neurite alt_id: UBERON:FBbt_00005113-FMA_61814 def: "One of the processes or extensions of a neuron, axon or dendrite or cell body fiber. // Cell appendage of the neuron which includes the axon and the dendrite." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Neurite] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Neurite" EXACT [] xref: FBbt:00005113 xref: FMA:61814 xref: GAID:751 is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0001025 name: synapse alt_id: UBERON:FBbt_00005114-FMA_67408 def: "The structural contact that is the site of transmission between neurons, identified by a presynaptic ribbon and synaptic vesicles as the input element and one or (usually) more postsynaptic elements with various specializations (membrane densities, cisternae, etc.)." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Synapse] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Synapse" EXACT [] synonym: "Synaptic junction" EXACT [] synonym: "synaptic junction" EXACT [] xref: FBbt:00005114 xref: FMA:67408 xref: GAID:766 xref: GO:0045202 xref: ncithesaurus:Synapse is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0001026 name: motor nerve alt_id: UBERON:FBbt_00005135-FMA_5867 def: "General anatomical term applied to nerves in which somatic efferent nerve fibers predominate[FMA]. A motor nerve is an efferent nerve that exclusively contains the axons of somatic and branchial motoneurons, which innervate skeletal muscles (that ensure locomotion) and branchial muscles (that motorize the face and neck)[WP]." [Wikipedia:Motor_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "efferent nerve" RELATED [] synonym: "Motor nerve" EXACT [] synonym: "Nervus motorius" EXACT [] synonym: "nervus motorius" EXACT [] xref: FBbt:00005135 xref: FMA:5867 is_a: UBERON:0001021 ! nerve is_a: UBERON:0003266 ! implied link automatically realized ! nerve of central nervous system relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0001027 name: sensory nerve alt_id: UBERON:FBbt_00005136-FMA_5868 def: "General anatomical term applied to nerves in which somatic afferent nerve fibers predominate[FMA]. nerves that receive sensory stimuli made up of nerve fibers, called sensory fibers (mechanoreceptor fibers sense body movement and pressure placed against the body, and nociceptor fibers sense tissue injury)[WP]." [Wikipedia:Sensory_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "afferent nerve" RELATED [] synonym: "Nervus sensorius" EXACT [] synonym: "nervus sensorius" EXACT [] synonym: "Sensory nerve" EXACT [] xref: FBbt:00005136 xref: FMA:5868 xref: OpenCyc:Mx4rv0GdXpwpEbGdrcN5Y29ycA is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0001029 name: neuromuscular junction alt_id: UBERON:FBbt_00005142-FMA_61803 def: "." [Wikipedia:Neuromuscular_junction] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Myoneural junction" EXACT [] synonym: "myoneural junction" EXACT [] synonym: "Neuromuscular junction" EXACT [] xref: FBbt:00005142 xref: FMA:61803 xref: GAID:809 xref: GO:0031594 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001030 name: synaptic ribbon alt_id: UBERON:FBbt_00005143-FMA_67107 comment: This class was created automatically from a combination of ontologies synonym: "Ribbon synapse" EXACT [] synonym: "ribbon synapse" EXACT [] synonym: "Synaptic ribbon" EXACT [] xref: FBbt:00005143 xref: FMA:67107 is_a: UBERON:0001025 ! synapse relationship: part_of UBERON:0001029 ! neuromuscular junction [Term] id: UBERON:0001031 name: neurilemma alt_id: UBERON:FBbt_00005151-FMA_62976 def: "Neural tissue which consists of Schwann cells." [Wikipedia:Neurilemma] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Neurilemma" EXACT [] synonym: "Neurolemma" EXACT [] synonym: "neurolemma" EXACT [] synonym: "Sheath of Schwann" EXACT [] synonym: "sheath of schwann" EXACT [] xref: BTO:0003048 xref: FBbt:00005151 xref: FMA:62976 xref: GAID:730 xref: ncithesaurus:Sheath_of_Schwann is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001032 name: sense organ system alt_id: UBERON:FBbt_00005155-FMA_78499-MA_0002442-MIAA_0000031-WBbt_0005832-ZFA_0000282 def: "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information." [Wikipedia:Sensory_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sense organ system" EXACT [] synonym: "Sensory organ system" EXACT [] synonym: "sensory organ system" EXACT [] synonym: "sensory system" EXACT [] xref: AAO:0000555 xref: BILA:0000099 xref: EFO:0000805 xref: FMA:78499 xref: MA:0002442 xref: MAT:0000031 xref: MIAA:0000031 xref: TAO:0000282 xref: ZFA:0000282 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system relationship: overlaps UBERON:0001016 ! nervous system [Term] id: UBERON:0001033 name: gustatory system alt_id: UBERON:FBbt_00005159-FMA_7194-MA_0002446-MIAA_0000275-ZFA_0001101 def: "A sensory system for the sensing of taste." [Wikipedia:Gustatory_system] subset: uberon_slim synonym: "gustatory organ system" EXACT [] synonym: "taste system" EXACT [] xref: BILA:0000143 xref: EFO:0000830 xref: FMA:7194 xref: MA:0002446 xref: MAT:0000275 xref: MIAA:0000275 xref: TAO:0001101 xref: ZFA:0001101 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system [Term] id: UBERON:0001034 name: photoreceptor alt_id: UBERON:FBbt_00005162-FMA_85613 def: "Can refer to a light sensitive organ, a photoreceptor cell or a photoreceptor protein. This class was made obsolete because it was ambiguous" [Wikipedia:Photoreceptor] xref: BTO:0001060 xref: FBbt:00005162 xref: FMA:85613 xref: GAID:778 is_obsolete: true consider: CL:0000210 [Term] id: UBERON:0001035 name: socket alt_id: UBERON:FBbt_00005172-FMA_7495-MA_0001499 def: "Fibrous joint in which the periodontal ligament connects a tooth to the alveolar bone of the maxilla or mandible. Examples: Dento-alveolar joint of incisor tooth." [] comment: This class was created automatically from a combination of ontologies synonym: "Dento-alveolar joint" EXACT [] synonym: "dento-alveolar joint" EXACT [] synonym: "Dento-alveolar syndesmosis" EXACT [] synonym: "dento-alveolar syndesmosis" EXACT [] synonym: "gomphosis" EXACT [] synonym: "Peg-and-socket joint" EXACT [] synonym: "peg-and-socket joint" EXACT [] synonym: "Socket" EXACT [] xref: FMA:7495 xref: MA:0001499 is_a: UBERON:0002209 ! fibrous joint is_a: UBERON:0002213 ! cartilaginous joint [Term] id: UBERON:0001037 name: hair alt_id: UBERON:FBbt_00005182-FMA_53667-MA_0000155-MIAA_0000160 def: "." [Wikipedia:Hair] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "coat hair" EXACT [] synonym: "Hair" EXACT [] synonym: "microchaeta" RELATED [] synonym: "setulae" RELATED [] synonym: "vibrissa" RELATED [] xref: BTO:0001501 xref: EFO:0000958 xref: FMA:53667 xref: GAID:71 xref: HOG:0001191 xref: MA:0000155 xref: MAT:0000160 xref: MIAA:0000160 xref: ncithesaurus:Hair xref: OpenCyc:Mx4rvVjOX5wpEbGdrcN5Y29ycA-Mp88EdaAAACgycbRww is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002199 ! integument [Term] id: UBERON:0001038 name: chordotonal organ alt_id: UBERON:FBbt_00005215-MIAA_0000209 def: "Chordotonal organs are arthropod sensory structures consisting of special sensilla called the scolopidia, which are mechano-transducers and respond mainly to stretch or flexion. In insects, they consist of bundles of internal sensilla, each of which has a cap cell, an enveloping cell and one or more sense cells. The distal end of the organ is usually attached to the cuticle of the body wall, marked by a pit, a thickened disc or a nodule of chitin, and the base of the organ is connected with the hypodermis, often by a special ligament. // An auditory and vibration detector in insects" [FB:FBrf0056378, Wikipedia:Chordotonal_organ] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ch" RELATED [] synonym: "scolopophorous organ" RELATED [] xref: EFO:0000940 xref: FBbt:00005215 xref: MAT:0000209 xref: MIAA:0000209 is_a: UBERON:0000020 ! sense organ [Term] id: UBERON:0001040 name: yolk sac alt_id: UBERON:FBbt_00005376-FMA_87180 def: "Membranous sac attached to an embryo, providing early nourishment in the form of yolk in bony fishes, sharks, reptiles, birds, and primitive mammals. It functions as the developmental circulatory system of the human embryo, before internal circulation begins. In the mouse, the yolk sac is the first site of blood formation, generating primitive macrophages and erythrocytes." [Wikipedia:Yolk_sac] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Yolk sac" EXACT [] xref: BTO:0001471 xref: EHDAA:164 xref: FMA:87180 xref: GAID:1301 xref: HOG:0000830 xref: ncithesaurus:Yolk_Sac is_a: UBERON:0000478 ! extraembryonic structure [Term] id: UBERON:0001041 name: foregut alt_id: UBERON:FBbt_00005379-FMA_45616-MA_0001526-XAO_0000232 def: "An anterior part of the alimentary canal derived from the ectoderm." [FB:gg, Wikipedia:Foregut] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Foregut" EXACT [] xref: BILA:0000085 xref: BTO:0000507 xref: EHDAA:520 xref: FBbt:00005379 xref: FMA:45616 xref: HOG:0000285 xref: MA:0001526 xref: ncithesaurus:Foregut xref: XAO:0000232 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001555 ! gut [Term] id: UBERON:0001042 name: pharynx alt_id: UBERON:FBbt_00005380-FMA_46688-MA_0000432-MIAA_0000049-WBbt_0003681-ZFA_0000056 def: "the feeding organ, a neuro-muscular pump in the head of the animal, used to ingest food, bacteria suspended in liquid, filter them out, grind them up and transport posteriorly into the instestine. // ZFA: Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills. Kimmel et al, 1995." [WB:rynl, Wikipedia:Pharynx, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "esophagus" RELATED [] synonym: "Pharynx" EXACT [] xref: BTO:0001049 xref: EFO:0000836 xref: EHDAA:2947 xref: FBbt:00005380 xref: FMA:46688 xref: GAID:155 xref: HOG:0000462 xref: MA:0000432 xref: MAT:0000049 xref: MIAA:0000049 xref: ncithesaurus:Pharynx xref: OpenCyc:Mx4rvViv7ZwpEbGdrcN5Y29ycA xref: TAO:0000056 xref: WBbt:0003681 xref: ZFA:0000056 is_a: UBERON:0000477 ! anatomical cluster relationship: continuous_with UBERON:0001043 ! esophagus relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0001043 name: esophagus alt_id: UBERON:FBbt_00005381-FMA_7131-MA_0000352-MIAA_0000048-XAO_0000127-ZFA_0000204 def: "Organ with organ cavity which is continuous proximally with the pharynx and distally with the stomach. Examples: There is only one esophagus. // Tube that connects the pharynx to the stomach. At NF stage 57 it is a straight tube, round in cross section, and starting from the pharynx runs backward along the dorsal side of the abdominal cavity. Its lining consists of a columnar glandular epithelium with mucus secreting cells. It is thrown into longitudinal folds." [ISBN:0815318960, OMD:esophagus, Wikipedia:Esophagus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Esophagus" EXACT [] synonym: "Gullet" EXACT [] synonym: "gullet" EXACT [] synonym: "oesophagus" EXACT [] xref: AAO:0000145 xref: BTO:0000959 xref: EFO:0000835 xref: EHDAA:2937 xref: FBbt:00005381 xref: FMA:7131 xref: GAID:291 xref: galen:Esophagus xref: HOG:0000450 xref: MA:0000352 xref: MAT:0000048 xref: MIAA:0000048 xref: ncithesaurus:Esophagus xref: OpenCyc:Mx4rvVj9Q5wpEbGdrcN5Y29ycA xref: TAO:0000204 xref: XAO:0000127 xref: ZFA:0000204 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001041 ! foregut relationship: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0001044 name: salivary gland alt_id: UBERON:FBbt_00005382-FMA_9597-MA_0000346-MIAA_0000079 def: "saliva-secreting exocrine glands of the oral cavity[GO]. Lobular organ the parenchyma of which consists of glandular acini which communicate the oral cavity. Examples: parotid gland, sublingual gland, lingual salivary gland[FMA]." [GO:0007431, Wikipedia:Salivary_gland] subset: uberon_slim synonym: "Salivary gland" EXACT [] xref: BTO:0001203 xref: EFO:0000859 xref: EHDAA:7987 xref: FBbt:00005382 xref: FMA:9597 xref: GAID:937 xref: HOG:0000376 xref: MA:0000346 xref: MAT:0000079 xref: MIAA:0000079 xref: ncithesaurus:Salivary_Gland xref: OpenCyc:Mx4rvVjl5ZwpEbGdrcN5Y29ycA is_a: UBERON:0002530 ! gland is_a: UBERON:0003294 ! implied link automatically realized ! gland of foregut intersection_of: UBERON:0002530 ! gland intersection_of: secretes UBERON:0001836 ! saliva relationship: part_of UBERON:0000167 ! oral cavity relationship: part_of UBERON:0001041 ! foregut [Term] id: UBERON:0001045 name: midgut alt_id: UBERON:FBbt_00005383-FMA_45617-MA_0001564-XAO_0000103 def: "In humans: originates from the foregut at the opening of the bile duct into the duodenum and continues through the small intestine and much of the large intestine until the transition to the hindgut about two-thirds of the way through the transverse colon. That part of the alimentary canal which lies between the gizzard and the hind intestine. In the context of Drosophila refers to the part of the alimentary canal derived from the endoderm." [FB:gg, ISBN:3110148986, Wikipedia:Midgut] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Midgut" EXACT [] xref: BILA:0000086 xref: BTO:0000863 xref: EFO:0001950 xref: FBbt:00003138 xref: FMA:45617 xref: HOG:0000290 xref: MA:0001564 xref: ncithesaurus:Midgut xref: XAO:0000103 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002075 ! viscus relationship: part_of UBERON:0001555 ! gut [Term] id: UBERON:0001046 name: hindgut alt_id: UBERON:FBbt_00005384-FMA_45618-MA_0001527-XAO_0000104 def: "A posterior part of the alimentary canal derived from the ectoderm." [FB:gg, Wikipedia:Hindgut] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hindgut" EXACT [] xref: BILA:0000087 xref: BTO:0000510 xref: FBbt:00005384 xref: FMA:45618 xref: HOG:0000459 xref: MA:0001527 xref: ncithesaurus:Hindgut xref: XAO:0000104 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001555 ! gut [Term] id: UBERON:0001047 name: neural glomerulus alt_id: UBERON:FBbt_00005386 def: "Roundish subunit structure of a neuropil, often ensheathed by glial lamellae. Also, unit structure of the antennal lobe." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Glomerulus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Glomerulus" EXACT [] xref: FBbt:00005386 xref: ncithesaurus:Glomerulus is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0001048 name: primordium alt_id: UBERON:FBbt_00005495-FMA_86589-XAO_0003043 def: "Primordia are populations of contiguous cells that are morphologically distinct and already correspond in extent to a later organ/tissue. // An embryonic structure that is the rudiment or commencement of a part or organ." [BTO:0001886, FB:DJS, FB:FBrf0089570, FB:FBrf0178740, Wikipedia:Primordium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "P" RELATED [] synonym: "placode" RELATED [] synonym: "Primordium" EXACT [] xref: BTO:0001886 xref: EFO:0001652 xref: FBbt:00005495 xref: FMA:86589 xref: MAT:0000482 xref: ncithesaurus:Primordium xref: XAO:0003043 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0001049 name: neural tube alt_id: UBERON:FBbt_00005554-MIAA_0000069-ZFA_0001135 def: "." [Wikipedia:Neural_tube] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "presumptive central nervous system" RELATED [] xref: BTO:0001057 xref: EHDAA:2869 xref: EHDAA:908 xref: HOG:0000307 xref: MAT:0000069 xref: MIAA:0000069 xref: ncithesaurus:Neural_Tube xref: TAO:0001135 xref: ZFA:0001135 is_a: UBERON:0002346 ! neural ectoderm relationship: develops_from UBERON:0000483 ! epithelium relationship: develops_from UBERON:0002346 ! neural ectoderm [Term] id: UBERON:0001050 name: atrium alt_id: UBERON:FBbt_00005615-FMA_85574-ZFA_0000471 def: "Anatomical chamber. Examples: right atrium of heart, atrium of middle nasal meatus, atrium of tympanic cavity, atrium of alveolus. // One of four heart chambers." [] subset: uberon_slim synonym: "Atrium" EXACT [FMA:85574] xref: BTO:0000903 xref: EFO:0000277 xref: EHDAA:1265 xref: FMA:85574 xref: galen:Atrium xref: MAT:0000496 xref: OpenCyc:Mx4rDJ89oqgPEdudWQACs5b6Bw is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0001051 name: hypopharynx alt_id: UBERON:FBbt_00005751-FMA_54880-MA_0001796 def: "Bottom part of the pharynx, and is the part of the throat that connects to the esophagus." [Wikipedia:Hypopharynx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hypopharynx" EXACT [] synonym: "Laryngeal pharynx" EXACT [] synonym: "laryngeal pharynx" EXACT [] synonym: "Laryngopharynx" EXACT [] synonym: "laryngopharynx" EXACT [] xref: BTO:0001740 xref: EFO:0001388 xref: FMA:54880 xref: GAID:338 xref: HOG:0000445 xref: MA:0001796 xref: ncithesaurus:Hypopharynx is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001042 ! pharynx [Term] id: UBERON:0001052 name: rectum alt_id: UBERON:FBbt_00005756-FMA_14544-MA_0000336-MIAA_0000050-WBbt_0005773-XAO_0000238 def: "Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine. Examples: There is only one small intestine. // The passage from the posterior intestine, from the rectal valve to the opening to the exterior. // The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005." [WA:dh, Wikipedia:Rectum, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "rectal sac" RELATED [] xref: BTO:0001158 xref: EFO:0000848 xref: EHDAA:5836 xref: FBbt:00005756 xref: FMA:14544 xref: GAID:311 xref: HOG:0000427 xref: MA:0000336 xref: MAT:0000050 xref: MIAA:0000050 xref: ncithesaurus:Rectum xref: OpenCyc:Mx4rvVjaU5wpEbGdrcN5Y29ycA xref: WBbt:0005773 xref: XAO:0000238 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0001053 name: neurohemal organ alt_id: UBERON:FBbt_00005757-MIAA_0000212 comment: This class was created automatically from a combination of ontologies synonym: "neurohaemal organ" RELATED [] xref: BTO:0002106 xref: EFO:0000864 xref: FBbt:00005757 xref: MAT:0000212 xref: MIAA:0000212 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001054 name: malpighian tubule alt_id: UBERON:FBbt_00005786-MIAA_0000123 def: "The most important structure of the insect's excretory organ, which may comprise cystiform or labyrinthine highly versatile tubules having their outlet into the inital section of the rectum." [ISBN:3110148986, Wikipedia:Malpighian_tubule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Malpighian tubule" EXACT [] synonym: "Malpighian tubules" EXACT [] synonym: "malpighian tubules" EXACT [] xref: BTO:0000810 xref: EFO:0000243 xref: FBbt:00005786 xref: GAID:1228 xref: MAT:0000123 xref: MIAA:0000123 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001008 ! urinary system [Term] id: UBERON:0001055 name: ureter alt_id: UBERON:FBbt_00005793-FMA_19667-FMA_9704-MA_0000378-MA_0000379-MIAA_0000120-MIAA_0000121-WBbt_0004540-WBbt_0005777-XAO_0000144-XAO_0000153 is_obsolete: true consider: UBERON:0000056 consider: UBERON:0000057 [Term] id: UBERON:0001056 name: corpus cardiacum alt_id: UBERON:FBbt_00005799-MIAA_0000211 comment: This class was created automatically from a combination of ontologies xref: BTO:0000432 xref: EFO:0000380 xref: FBbt:00005799 xref: MAT:0000211 xref: MIAA:0000211 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0001057 name: corpus allatum alt_id: UBERON:FBbt_00005800-MIAA_0000210 def: "A neurosecretory organ forming part of the retrocerebral complex." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0000291 xref: EFO:0000379 xref: FBbt:00005800 xref: MAT:0000210 xref: MIAA:0000210 is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0001058 name: mushroom body alt_id: UBERON:FBbt_00005801-MIAA_0000336 def: "Paired neuropils, thought to be crucial to olfactory associative learning and memory. Mushroom body neuropils are divided into calyces, pedunculus, and its subsequent lobes. In Drosophila these are the alpha, beta, and gamma lobes." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html, Wikipedia:Mushroom_body] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0002675 xref: EFO:0000925 xref: FBbt:00005801 xref: GAID:1231 xref: MAT:0000336 xref: MIAA:0000336 is_a: UBERON:0000045 ! ganglion is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain is_a: UBERON:0003339 ! implied link automatically realized ! ganglion of central nervous system relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0001059 name: pars intercerebralis alt_id: UBERON:FBbt_00005802-MIAA_0000337 def: "A medial cleft or depression dividing the left and right protocerebrum and containing numerous large and small somata of neurosecretory and neuromodulatory neurons." [http://flybrain.uni-freiburg.de/Flybrain/html/terms/terms.html] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EFO:0000926 xref: FBbt:00005802 xref: MAT:0000337 xref: MIAA:0000337 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0001062 name: anatomical entity alt_id: UBERON:FBbt_root_00000000-FMA_62955 def: "Biological entity, which constitutes the structural organization of a biological organism, or is an attribute of that organization. Examples: cell, heart, head, peritoneal cavity, apex of lung, anatomical term, sagittal plane." [CARO:MAH] comment: This class was created automatically from a combination of ontologies xref: BILA:0000000 xref: FBbt_root:00000000 xref: FMA:62955 xref: HAO:0000000 xref: NIF_GrossAnatomy:birnlex_1002 xref: TAO:0100000 xref: ZFA:0100000 [Term] id: UBERON:0001063 name: flocculus alt_id: UBERON:Flocculus-MA_0000992 def: "." [Wikipedia:Flocculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: MA:0000992 xref: NIF_GrossAnatomy:birnlex_1329 xref: NULL:Flocculus is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex relationship: part_of UBERON:0002245 ! hemisphere of cerebellum [Term] id: UBERON:0001064 name: pancreatic duct alt_id: UBERON:FMA_10419-MA_0000124-ZFA_0001372 def: "." [Wikipedia:Pancreatic_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pancreatic duct" EXACT [] xref: BTO:0002362 xref: EHDAA:9194 xref: FMA:10419 xref: GAID:337 xref: HOG:0000254 xref: MA:0000124 xref: ncithesaurus:Pancreatic_Duct xref: TAO:0001372 xref: ZFA:0001372 is_a: UBERON:0000058 ! duct intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0001264 ! pancreas relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0001065 name: parotid duct alt_id: UBERON:FMA_10420-MA_0002697 def: "." [Wikipedia:Parotid_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Duct of parotid gland" EXACT [] synonym: "duct of parotid gland" EXACT [] synonym: "Parotid duct" EXACT [] synonym: "Stenon duct" EXACT [] synonym: "stenon duct" EXACT [] synonym: "Stensen's duct" EXACT [] synonym: "stensen's duct" EXACT [] synonym: "Stensens's duct" EXACT [] synonym: "stensens's duct" EXACT [] xref: FMA:10420 xref: MA:0002697 xref: ncithesaurus:Parotid_Duct is_a: UBERON:0001837 ! duct of salivary gland intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0001831 ! parotid gland relationship: part_of UBERON:0001831 ! parotid gland [Term] id: UBERON:0001066 name: intervertebral disk alt_id: UBERON:FMA_10446-MA_0000110 def: "cartiliginous organ that lies between adjacent vertebrae in the spine. Each disc forms a cartilaginous joint to allow slight movement of the vertebrae, and acts as a ligament to hold the vertebrae together[WP]." [Wikipedia:Intervertebral_disk] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "intervertebral disc" EXACT [] synonym: "spinal disc" EXACT [Wikipedia:Spinal_disc] xref: BTO:0003625 xref: EFO:0001370 xref: FMA:10446 xref: GAID:105 xref: MA:0000110 xref: ncithesaurus:Intervertebral_Disc xref: OpenCyc:Mx4rv11AcpwpEbGdrcN5Y29ycA is_a: UBERON:0000062 ! organ relationship: adjacent_to UBERON:0002412 {minCardinality="2"} ! vertebra relationship: part_of UBERON:0001468 ! intervertebral symphysis [Term] id: UBERON:0001067 name: vertebral arch joint alt_id: UBERON:FMA_10447-MA_0001513 def: "a synovial joint between the superior articular process of one vertebra and the inferior articular process of the vertebra directly above it. There are two facet joints in each spinal motion segment[WP]." [Wikipedia:Facet_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Facet joint" EXACT [] synonym: "facet joint" EXACT [] synonym: "Joint of vertebral arch" EXACT [] synonym: "joint of vertebral arch" EXACT [] synonym: "Joint of vertebral articular process" EXACT [] synonym: "joint of vertebral articular process" EXACT [] synonym: "Vertebral arch joint" EXACT [] synonym: "Zygapophyseal joint" EXACT [] synonym: "zygapophyseal joint" EXACT [] synonym: "Zygapophysial joint" EXACT [] synonym: "zygapophysial joint" EXACT [] xref: FMA:10447 xref: GAID:275 xref: MA:0001513 xref: ncithesaurus:Facet_Joint is_a: UBERON:0002217 ! synovial joint relationship: adjacent_to UBERON:0002412 ! vertebra relationship: part_of UBERON:0003861 ! neural arch [Term] id: UBERON:0001068 name: skin of back alt_id: UBERON:FMA_10462-MA_0000498 comment: This class was created automatically from a combination of ontologies synonym: "Back skin" EXACT [] synonym: "back skin" EXACT [] synonym: "Skin of back" EXACT [] xref: FMA:10462 xref: FMA:22985 xref: MA:0000498 is_a: UBERON:0001085 ! skin of trunk intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001137 ! back relationship: part_of UBERON:0001137 ! back [Term] id: UBERON:0001069 name: head of pancreas alt_id: UBERON:FMA_10468-MA_0000122 def: "." [Wikipedia:Head_of_pancreas] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Head of pancreas" EXACT [] synonym: "pancreas head" EXACT [] synonym: "Pancreatic head" EXACT [] synonym: "pancreatic head" EXACT [] synonym: "Right extremity of pancreas" EXACT [] synonym: "right extremity of pancreas" EXACT [] xref: FMA:10468 xref: HOG:0000448 xref: MA:0000122 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0001070 name: external carotid artery alt_id: UBERON:FMA_10635-MA_0001929-XAO_0000345-ZFA_0005022 def: "The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch. Isogai et al. 2001." [Wikipedia:External_carotid_artery, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "External carotid artery" EXACT [] synonym: "opercular artery" EXACT [] synonym: "ORA" RELATED [] xref: EFO:0001953 xref: FMA:10635 xref: GAID:480 xref: HOG:0000265 xref: MA:0001929 xref: ncithesaurus:External_Carotid_Artery xref: TAO:0005022 xref: XAO:0000345 xref: ZFA:0005022 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001071 name: superficial cervical artery alt_id: UBERON:FMA_10665-MA_0002052 def: "." [Wikipedia:Superficial_cervical_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Superficial cervical artery" EXACT [] xref: FMA:10665 xref: MA:0002052 xref: ncithesaurus:Superficial_Cervical_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001072 name: inferior vena cava alt_id: UBERON:FMA_10951-MA_0000480-XAO_0000388 def: "Trunk of systemic vein which is formed by the union of the right common iliac vein and the left common iliac vein and terminates in the right atrium." [Wikipedia:Inferior_vena_cava] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Inferior vena cava" EXACT [] synonym: "Posterior vena cava" EXACT [] synonym: "posterior vena cava" EXACT [] xref: BTO:0002682 xref: FMA:10951 xref: GAID:548 xref: galen:InferiorVenaCava xref: HOG:0001194 xref: MA:0000480 xref: ncithesaurus:Inferior_Vena_Cava xref: XAO:0000388 is_a: UBERON:0000063 ! organ segment relationship: develops_from UBERON:0001143 ! hepatic vein relationship: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0001073 name: ileocecal junction alt_id: UBERON:FMA_11338-MA_0000332 comment: This class was created automatically from a combination of ontologies synonym: "ileocaecal junction" EXACT [] synonym: "Ileocecal junction" EXACT [] xref: FMA:11338 xref: MA:0000332 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000160 ! intestine [Term] id: UBERON:0001074 name: pericardial cavity alt_id: UBERON:FMA_11350-MA_0000053 def: "Cavity of serous sac surrounded by serous pericardium." [Wikipedia:Pericardial_cavity] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cavity of pericardial sac" EXACT [] synonym: "cavity of pericardial sac" EXACT [] synonym: "Pericardial cavity" EXACT [] xref: FMA:11350 xref: HOG:0000556 xref: MA:0000053 xref: ncithesaurus:Pericardial_Cavity xref: ZFA:0001655 is_a: UBERON:0002323 ! body cavity relationship: part_of UBERON:0002406 ! pericardial sac [Term] id: UBERON:0001075 name: body of vertebra alt_id: UBERON:FMA_11945-MA_0001457 def: "." [Wikipedia:Body_of_vertebra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Body of vertebra" EXACT [] synonym: "centrum" EXACT [] synonym: "Corpus vertebrae (vertebrale)" EXACT [] synonym: "corpus vertebrae (vertebrale)" EXACT [] synonym: "Vertebral body" EXACT [] synonym: "vertebral body" EXACT [] synonym: "vertebral centrum" EXACT [] xref: AAO:0000697 xref: FMA:11945 xref: MA:0001457 xref: ncithesaurus:Vertebral_Body xref: OpenCyc:Mx4rvXU4VpwpEbGdrcN5Y29ycA xref: ZFA:0000126 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0001076 name: spinous process of vertebra alt_id: UBERON:FMA_11948-MA_0001455 def: "." [Wikipedia:Processus_spinosus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "neural spine" RELATED [] synonym: "Processus spinosus" EXACT [] synonym: "processus spinosus" EXACT [] synonym: "Spinous process of vertebra" EXACT [] synonym: "vertebra spinous process" EXACT [] xref: FMA:11948 xref: MA:0001455 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0001077 name: transverse process of vertebra alt_id: UBERON:FMA_11949-MA_0001456 def: "." [Wikipedia:Processus_transversus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Processus transversus" EXACT [] synonym: "processus transversus" EXACT [] synonym: "Transverse process of vertebra" EXACT [] synonym: "vertebra transverse process" EXACT [] xref: FMA:11949 xref: MA:0001456 is_a: UBERON:0003109 ! transverse process is_a: UBERON:0003463 ! implied link automatically realized ! trunk bone is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue intersection_of: UBERON:0003109 ! transverse process intersection_of: part_of UBERON:0002412 ! vertebra relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0001078 name: pedicle of vertebra alt_id: UBERON:FMA_11950-MA_0001458 def: "." [Wikipedia:Pedicle_of_vertebral_arch] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pedicle of vertebra" EXACT [] synonym: "Pedicle of vertebral arch" EXACT [] synonym: "pedicle of vertebral arch" EXACT [] synonym: "Vertebral pedicle" EXACT [] synonym: "vertebral pedicle" EXACT [] xref: FMA:11950 xref: MA:0001458 xref: OpenCyc:Mx4rvYdjdJwpEbGdrcN5Y29ycA is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0001079 name: superior articular process of vertebra alt_id: UBERON:FMA_11953-MA_0001452 comment: This class was created automatically from a combination of ontologies synonym: "Cranial articular process of vertebra" EXACT [] synonym: "cranial articular process of vertebra" EXACT [] synonym: "prezygapophysis" RELATED [] synonym: "Processus articularis superior" EXACT [] synonym: "processus articularis superior" EXACT [] synonym: "Superior articular process of vertebra" EXACT [] synonym: "vertebra cranial articular process" EXACT [] xref: FMA:11953 xref: MA:0001452 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0001080 name: inferior articular process of vertebra alt_id: UBERON:FMA_11954-MA_0001451 comment: This class was created automatically from a combination of ontologies synonym: "Caudal articular process of vertebra" EXACT [] synonym: "caudal articular process of vertebra" EXACT [] synonym: "Inferior articular process of vertebra" EXACT [] synonym: "postzygapophysis" RELATED [] synonym: "Processus articularis inferior" EXACT [] synonym: "processus articularis inferior" EXACT [] synonym: "vertebra caudal articular process" EXACT [] xref: FMA:11954 xref: MA:0001451 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0001081 name: endocardium of ventricle alt_id: UBERON:FMA_12148-MA_0000079-ZFA_0001615 def: "Endocardium that is part of the cardiac ventricle." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "Endocardium of ventricle" EXACT [] synonym: "ventricle endocardium" EXACT [] synonym: "Ventricular endocardium" EXACT [] synonym: "ventricular endocardium" EXACT [] xref: FMA:12148 xref: HOG:0000607 xref: MA:0000079 xref: ZFA:0001615 is_a: UBERON:0002165 ! endocardium intersection_of: UBERON:0002165 ! endocardium intersection_of: part_of UBERON:0002300 ! ventricle relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0001082 name: epicardium of ventricle alt_id: UBERON:FMA_12150-ZFA_0005058 def: "The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space. Hu et al. 2001.." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "Epicardium of ventricle" EXACT [] synonym: "Ventricular epicardium" EXACT [] synonym: "ventricular epicardium" EXACT [] xref: FMA:12150 xref: TAO:0005058 xref: ZFA:0005058 is_a: UBERON:0002348 ! epicardium intersection_of: UBERON:0002348 ! epicardium intersection_of: part_of UBERON:0002300 ! ventricle relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0001083 name: myocardium of ventricle alt_id: UBERON:FMA_12151-MA_0000082-ZFA_0005061 def: "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer Hu et al. 2001.." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "Myocardium of ventricle" EXACT [] synonym: "ventricle myocardium" EXACT [] synonym: "Ventricular myocardium" EXACT [] synonym: "ventricular myocardium" EXACT [] xref: FMA:12151 xref: HOG:0000604 xref: MA:0000082 xref: TAO:0005061 xref: ZFA:0005061 is_a: UBERON:0002349 ! myocardium intersection_of: UBERON:0002349 ! myocardium intersection_of: part_of UBERON:0002300 ! ventricle relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0001084 name: skin of head alt_id: UBERON:FMA_12166-MA_0000582 comment: This class was created automatically from a combination of ontologies synonym: "Head skin" EXACT [] synonym: "head skin" EXACT [] synonym: "Skin of head" EXACT [] xref: FMA:12166 xref: FMA:24756 xref: MA:0000582 xref: ncithesaurus:Head_Skin is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000033 ! head [Term] id: UBERON:0001085 name: skin of trunk alt_id: UBERON:FMA_12167-MA_0000517 comment: This class was created automatically from a combination of ontologies synonym: "Skin of trunk" EXACT [] synonym: "Trunk skin" EXACT [] synonym: "trunk skin" EXACT [] xref: FMA:12167 xref: FMA:23093 xref: MA:0000517 is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0001086 name: articular cartilage alt_id: UBERON:FMA_12264-MA_0000487-ZFA_0001644 def: "." [Wikipedia:Articular_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Articular cartilage" EXACT [] synonym: "Cartilago articularis" EXACT [] synonym: "cartilago articularis" EXACT [] xref: BTO:0001572 xref: EFO:0001902 xref: FMA:12264 xref: GAID:101 xref: galen:ArticularCartilage xref: MA:0000487 xref: ncithesaurus:Articular_Cartilage xref: TAO:0001670 xref: ZFA:0001644 is_a: UBERON:0001994 ! hyaline cartilage [Term] id: UBERON:0001087 name: pleural fluid alt_id: UBERON:FMA_12273-MA_0002532 def: "Transudate contained in the pleural cavity." [Wikipedia:Pleural_fluid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pleural fluid" EXACT [] xref: BTO:0003080 xref: FMA:12273 xref: MA:0002532 xref: MAT:0000500 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001088 name: urine alt_id: UBERON:FMA_12274-MA_0002545-MIAA_0000058 def: "Excretion in liquid state processed by the kidney." [Wikipedia:Urine] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Urine" EXACT [] xref: BTO:0001419 xref: EFO:0001939 xref: ENVO:00002047 xref: FMA:12274 xref: GAID:1189 xref: MA:0002545 xref: MAT:0000058 xref: MIAA:0000058 xref: ncithesaurus:Urine xref: OpenCyc:Mx4rvVjGppwpEbGdrcN5Y29ycA is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001089 name: sweat alt_id: UBERON:FMA_12275-MA_0002539 def: "Secretion produced by a sweat gland." [Wikipedia:Sweat] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sweat" EXACT [] xref: BTO:0001254 xref: ENVO:02000025 xref: FMA:12275 xref: GAID:1172 xref: MA:0002539 xref: ncithesaurus:Sweat xref: OpenCyc:Mx4rvVjJtZwpEbGdrcN5Y29ycA is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001090 name: synovial fluid alt_id: UBERON:FMA_12277-MA_0002544 def: "Transudate contained in the synovial cavity of joints, and in the cavity of tendon sheaths and bursae." [Wikipedia:Synovial_fluid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Joint fluid" EXACT [] synonym: "joint fluid" EXACT [] synonym: "Synovial fluid" EXACT [] xref: ENVO:02000039 xref: FMA:12277 xref: GAID:265 xref: MA:0002544 xref: ncithesaurus:Synovial_Fluid xref: ZFA:0005154 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001091 name: calcareous tooth alt_id: UBERON:FMA_12516-MA_0000348-MIAA_0000041-XAO_0000431-ZFA_0000644-ZFA_0000694 def: "Organ with a cavity which consist of dentine surrounded by enamel. Examples: incisor, molar." [Wikipedia:Tooth_(animal), ZFIN:curator] subset: uberon_slim synonym: "ceratobranchial 5 tooth" NARROW [] synonym: "dentine containing tooth" EXACT [] synonym: "tooth" EXACT [] synonym: "vertebrate tooth" EXACT [] xref: BTO:0000397 xref: EFO:0000839 xref: EHDAA:8009 xref: EHDAA:8045 xref: FMA:12516 xref: GAID:1260 xref: HAO:0001019 xref: HOG:0000127 xref: MA:0000348 xref: MAT:0000041 xref: MIAA:0000041 xref: ncithesaurus:Tooth xref: OpenCyc:Mx4rvVjUEZwpEbGdrcN5Y29ycA xref: TAO:0000694 xref: XAO:0000431 xref: ZFA:0000694 is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0001048 ! primordium relationship: has_part UBERON:0001751 ! dentine relationship: has_part UBERON:0001752 ! enamel [Term] id: UBERON:0001092 name: atlas alt_id: UBERON:FMA_12519-MA_0001421 def: "." [Wikipedia:Atlas_(anatomy)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Atlas" EXACT [] synonym: "Atlas (CI)" EXACT [] synonym: "atlas (ci)" EXACT [] synonym: "C1 vertebra" EXACT [] synonym: "c1 vertebra" EXACT [] synonym: "cervical vertebra 1" EXACT [] synonym: "First cervical vertebra" EXACT [] synonym: "first cervical vertebra" EXACT [] xref: AAO:0000709 xref: EHDAA:10606 xref: FMA:12519 xref: GAID:236 xref: MA:0001421 xref: ncithesaurus:C1_Vertebra is_a: UBERON:0002413 ! cervical vertebra [Term] id: UBERON:0001093 name: second cervical vertebra alt_id: UBERON:FMA_12520-MA_0001422-ZFA_0000092 def: "second cervical vertebra (C2) of the spine." [Wikipedia:Axis_(anatomy)] comment: note: not the same as ZFA term 'axis' subset: uberon_slim synonym: "Axis (CII)" EXACT [] synonym: "axis (cii)" EXACT [] synonym: "C2 vertebra" EXACT [] synonym: "midline" RELATED [] xref: EHDAA:10608 xref: FMA:12520 xref: GAID:237 xref: ncithesaurus:Axis is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001094 name: sacral vertebra alt_id: UBERON:FMA_12526-XAO_0003078 def: "." [Wikipedia:Sacral_vertebra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sacral segment" EXACT [] synonym: "sacral segment" EXACT [] synonym: "Sacral vertebra" EXACT [] synonym: "Segment of sacrum" EXACT [] synonym: "segment of sacrum" EXACT [] xref: FMA:12526 xref: MA:0000313 xref: ncithesaurus:Sacral_Vertebra xref: OpenCyc:Mx4rv-ZsXpwpEbGdrcN5Y29ycA xref: XAO:0003078 is_a: UBERON:0002412 ! vertebra [Term] id: UBERON:0001095 name: coccygeal vertebra alt_id: UBERON:FMA_12527-XAO_0003079-ZFA_0000326 def: "Vertebrae bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae. " [Wikipedia:Caudal_vertebra, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Caudal vertebra" EXACT [] synonym: "caudal vertebra" EXACT [] synonym: "caudal vertebrae" RELATED [] synonym: "Coccygeal segment" EXACT [] synonym: "coccygeal segment" EXACT [] synonym: "Coccygeal vertebra" EXACT [] xref: FMA:12527 xref: galen:CoccygealVertebra xref: MA:0001420 xref: ncithesaurus:Coccygeal_Vertebra xref: OpenCyc:Mx4rv9IEzZwpEbGdrcN5Y29ycA xref: TAO:0000326 xref: XAO:0003079 xref: ZFA:0000326 is_a: UBERON:0002412 ! vertebra [Term] id: UBERON:0001096 name: wall of esophagus alt_id: UBERON:FMA_12611-MA_0002691 comment: This class was created automatically from a combination of ontologies synonym: "Esophageal wall" EXACT [] synonym: "esophageal wall" EXACT [] synonym: "Esophagus wall" EXACT [] synonym: "esophagus wall" EXACT [] synonym: "Wall of esophagus" EXACT [] xref: FMA:12611 xref: MA:0002691 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0003697 ! implied link automatically realized ! abdominal wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001043 ! esophagus relationship: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0001097 name: axillary lymph node alt_id: UBERON:FMA_12771-MA_0000735 def: "." [Wikipedia:Axillary_lymph_node] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Axillary lymph node" EXACT [] synonym: "Axillary node" EXACT [] synonym: "axillary node" EXACT [] xref: FMA:12771 xref: MA:0000735 xref: ncithesaurus:Axillary_Lymph_Node is_a: UBERON:0000029 ! lymph node relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001098 name: incisor tooth alt_id: UBERON:FMA_12823-MA_0000349 def: "." [Wikipedia:Incisor_tooth] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "incisor" EXACT [] synonym: "Incisor tooth" EXACT [] xref: BTO:0001741 xref: EHDAA:8011 xref: EHDAA:8047 xref: FMA:12823 xref: GAID:1263 xref: MA:0000349 xref: ncithesaurus:Incisor is_a: UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0001099 name: subcostal vein alt_id: UBERON:FMA_12845-MA_0002222 def: "." [Wikipedia:Subcostal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Subcostal vein" EXACT [] xref: FMA:12845 xref: MA:0002222 xref: ncithesaurus:Subcostal_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001100 name: pectoralis minor alt_id: UBERON:FMA_13109-MA_0002355 def: "." [Wikipedia:Pectoralis_minor] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pectoralis minor" EXACT [] xref: EHDAA:8313 xref: FMA:13109 xref: HOG:0000902 xref: MA:0002355 xref: ncithesaurus:Pectoralis_Minor is_a: UBERON:0001495 ! pectoral muscle [Term] id: UBERON:0001101 name: external jugular vein alt_id: UBERON:FMA_13110-MA_0002156 def: "." [Wikipedia:External_jugular_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "External jugular vein" EXACT [] synonym: "External jugular venous tree" EXACT [] synonym: "external jugular venous tree" EXACT [] xref: FMA:13110 xref: galen:ExternalJugularVein xref: MA:0002156 xref: ncithesaurus:External_Jugular_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001102 name: cartilage of main bronchus alt_id: UBERON:FMA_13117-MA_0001846 comment: This class was created automatically from a combination of ontologies synonym: "Cartilage of main bronchus" EXACT [] synonym: "Main bronchial cartilage" EXACT [] synonym: "main bronchial cartilage" EXACT [] synonym: "main bronchus cartilage" EXACT [] xref: FMA:13117 xref: MA:0001846 is_a: UBERON:0001956 ! cartilage of bronchus intersection_of: UBERON:0002418 ! cartilage intersection_of: part_of UBERON:0002182 ! main bronchus relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0001103 name: diaphragm alt_id: UBERON:FMA_13295-MA_0001904 def: "The diaphragm is a skeletal muscle that is responsible for contraction and expansion of the lungs[GO]." [GO:0060539, Wikipedia:Diaphragm] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Diaphragm" EXACT [] synonym: "Thoracic diaphragm" EXACT [] synonym: "thoracic diaphragm" EXACT [] xref: BTO:0000341 xref: EFO:0000937 xref: FMA:13295 xref: GAID:158 xref: HOG:0000713 xref: MA:0001904 xref: MAT:0000502 xref: ncithesaurus:Diaphragm xref: OpenCyc:Mx4rvVivz5wpEbGdrcN5Y29ycA is_a: UBERON:0002426 ! chest muscle is_a: UBERON:0003831 ! implied link automatically realized ! respiratory system muscle relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0001104 name: anterior jugular vein alt_id: UBERON:FMA_13318-MA_0002155 def: "." [Wikipedia:Anterior_jugular_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anterior external jugular vein" EXACT [] synonym: "anterior external jugular vein" EXACT [] synonym: "Anterior jugular vein" EXACT [] xref: FMA:13318 xref: MA:0002155 xref: ncithesaurus:Anterior_Jugular_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001105 name: clavicle alt_id: UBERON:FMA_13321-MA_0001329 def: "." [Wikipedia:Clavicle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Clavicle" EXACT [] synonym: "Collar bone" EXACT [] synonym: "collar bone" EXACT [] xref: AAO:0000761 xref: FMA:13321 xref: GAID:182 xref: galen:Clavicle xref: HOG:0000849 xref: MA:0001329 xref: ncithesaurus:Clavicle xref: OpenCyc:Mx4rvVjijZwpEbGdrcN5Y29ycA is_a: UBERON:0001440 ! skeleton of upper limb relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001106 name: cephalic vein alt_id: UBERON:FMA_13324-MA_0002092 def: "." [Wikipedia:Cephalic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cephalic vein" EXACT [] synonym: "Cephalic vein of forearm" EXACT [] synonym: "cephalic vein of forearm" EXACT [] xref: FMA:13324 xref: galen:CephalicVein xref: MA:0002092 xref: ncithesaurus:Cephalic_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0001107 name: sternohyoid alt_id: UBERON:FMA_13341-MA_0002383-ZFA_0000283 def: "." [Wikipedia:Sternohyoid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sternohyoid" EXACT [] xref: FMA:13341 xref: MA:0002383 xref: ncithesaurus:Sternohyoid xref: TAO:0000283 xref: ZFA:0000283 is_a: UBERON:0002376 ! implied link automatically realized ! muscle of head is_a: UBERON:0002377 ! muscle of neck relationship: part_of UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002376 ! muscle of head relationship: part_of UBERON:0002539 ! pharyngeal arch [Term] id: UBERON:0001108 name: omohyoid alt_id: UBERON:FMA_13342-MA_0002348 def: "." [Wikipedia:Omohyoid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Omohyoid" EXACT [] xref: FMA:13342 xref: MA:0002348 xref: ncithesaurus:Omohyoid is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001109 name: sternothyroid alt_id: UBERON:FMA_13343-MA_0002386 def: "." [Wikipedia:Sternothyroid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sternothyroid" EXACT [] xref: FMA:13343 xref: MA:0002386 xref: ncithesaurus:Sternothyroid is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001110 name: thyrohyoid alt_id: UBERON:FMA_13344-MA_0002393 def: "." [Wikipedia:Thyrohyoid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Thyrohyoid" EXACT [] xref: FMA:13344 xref: MA:0002393 xref: ncithesaurus:Thyrohyoid is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001111 name: intercostal muscle alt_id: UBERON:FMA_13354-MA_0002324 def: "." [Wikipedia:Intercostal_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Intercostal muscle" EXACT [] synonym: "intercostales" EXACT [] xref: EFO:0001368 xref: FMA:13354 xref: GAID:159 xref: HOG:0000903 xref: MA:0002324 xref: ncithesaurus:Intercostal_Muscle is_a: UBERON:0002426 ! chest muscle [Term] id: UBERON:0001112 name: latissimus dorsi alt_id: UBERON:FMA_13357-MA_0002331 def: "." [Wikipedia:Latissimus_dorsi] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Latissimus dorsi" EXACT [] xref: EHDAA:8307 xref: FMA:13357 xref: HOG:0000930 xref: MA:0002331 is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001113 name: lobe of liver alt_id: UBERON:FMA_13361-MA_0000360 comment: This class was created automatically from a combination of ontologies synonym: "Hepatic lobe" EXACT [] synonym: "hepatic lobe" EXACT [] synonym: "Liver lobe" EXACT [] synonym: "liver lobe" EXACT [] synonym: "Lobe of liver" EXACT [] synonym: "Lobus hepatis" EXACT [] synonym: "lobus hepatis" EXACT [] xref: FMA:13361 xref: MA:0000360 xref: ncithesaurus:Liver_Lobe is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:0001114 name: right lobe of liver alt_id: UBERON:FMA_13362-MA_0000363 def: "." [Wikipedia:Right_lobe_of_liver] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "liver right lobe" EXACT [] synonym: "Right lobe of liver" EXACT [] xref: FMA:13362 xref: HOG:0001424 xref: MA:0000363 is_a: UBERON:0001113 ! lobe of liver [Term] id: UBERON:0001115 name: left lobe of liver alt_id: UBERON:FMA_13363-MA_0000361 def: "." [Wikipedia:Left_lobe_of_liver] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Left liver lobe" EXACT [] synonym: "left liver lobe" EXACT [] synonym: "Left lobe of liver" EXACT [] synonym: "liver left lobe" EXACT [] xref: FMA:13363 xref: HOG:0001423 xref: MA:0000361 xref: ZFA:0005172 is_a: UBERON:0001113 ! lobe of liver [Term] id: UBERON:0001116 name: quadrate lobe of liver alt_id: UBERON:FMA_13364-MA_0000365 def: "." [Wikipedia:Quadrate_lobe_of_liver] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "liver quadrate lobe" EXACT [] synonym: "Lobus quadratus" EXACT [] synonym: "lobus quadratus" EXACT [] synonym: "Quadrate lobe of liver" EXACT [] xref: FMA:13364 xref: HOG:0000509 xref: MA:0000365 xref: ncithesaurus:Lobus_Quadratus is_a: UBERON:0001114 ! right lobe of liver [Term] id: UBERON:0001117 name: caudate lobe of liver alt_id: UBERON:FMA_13365-MA_0000364 def: "." [Wikipedia:Caudate_lobe_of_liver] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Caudate lobe of liver" EXACT [] synonym: "Hepatovenous segment I" EXACT [] synonym: "hepatovenous segment i" EXACT [] synonym: "liver caudate lobe" EXACT [] synonym: "liver caudate process" RELATED [] synonym: "Lobus caudatus" EXACT [] synonym: "lobus caudatus" EXACT [] synonym: "Posterior hepatic segment I" EXACT [] synonym: "posterior hepatic segment i" EXACT [] synonym: "Posterior liver" EXACT [] synonym: "posterior liver" EXACT [] synonym: "Posterior part of liver" EXACT [] synonym: "posterior part of liver" EXACT [] synonym: "Segment I of liver" EXACT [] synonym: "segment i of liver" EXACT [] synonym: "Spiegelian lobe" EXACT [] synonym: "spiegelian lobe" EXACT [] synonym: "Spigel lobe" EXACT [] synonym: "spigel lobe" EXACT [] xref: FMA:13365 xref: HOG:0000508 xref: MA:0000364 xref: ncithesaurus:Lobus_Caudatus is_a: UBERON:0001114 ! right lobe of liver relationship: part_of UBERON:0001113 ! lobe of liver [Term] id: UBERON:0001118 name: lobe of thyroid gland alt_id: UBERON:FMA_13367-MA_0000131 comment: This class was created automatically from a combination of ontologies synonym: "Lobe of thyroid gland" EXACT [] synonym: "Lobus (glandula thyroidea)" EXACT [] synonym: "lobus (glandula thyroidea)" EXACT [] synonym: "Thyroid gland lobe" EXACT [] synonym: "thyroid gland lobe" EXACT [] xref: FMA:13367 xref: MA:0000131 xref: ncithesaurus:Thyroid_Gland_Lobe is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002046 ! thyroid follicle [Term] id: UBERON:0001119 name: right lobe of thyroid gland alt_id: UBERON:FMA_13368-MA_0000729 comment: This class was created automatically from a combination of ontologies synonym: "Lobus dexter (glandula thyroidea)" EXACT [] synonym: "lobus dexter (glandula thyroidea)" EXACT [] synonym: "Right lobe of thyroid gland" EXACT [] synonym: "thyroid gland right lobe" EXACT [] xref: FMA:13368 xref: MA:0000729 is_a: UBERON:0001118 ! lobe of thyroid gland [Term] id: UBERON:0001120 name: left lobe of thyroid gland alt_id: UBERON:FMA_13369-MA_0000728 comment: This class was created automatically from a combination of ontologies synonym: "Left lobe of thyroid gland" EXACT [] synonym: "Lobus sinister (glandula thyroidea)" EXACT [] synonym: "lobus sinister (glandula thyroidea)" EXACT [] synonym: "thyroid gland left lobe" EXACT [] xref: FMA:13369 xref: MA:0000728 is_a: UBERON:0001118 ! lobe of thyroid gland [Term] id: UBERON:0001121 name: longus colli alt_id: UBERON:FMA_13370-MA_0002341 def: "." [Wikipedia:Longus_colli] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Longus colli" EXACT [] xref: FMA:13370 xref: MA:0002341 xref: ncithesaurus:Longus_Colli is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0001122 name: scalenus medius alt_id: UBERON:FMA_13386-MA_0002370 def: "." [Wikipedia:Scalenus_medius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Medial scalene muscle" EXACT [] synonym: "medial scalene muscle" EXACT [] synonym: "Middle scalene" EXACT [] synonym: "middle scalene" EXACT [] synonym: "Scalenus medius" EXACT [] xref: FMA:13386 xref: MA:0002370 xref: ncithesaurus:Scalenus_Medius is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001123 name: scalenus posterior alt_id: UBERON:FMA_13387-MA_0002369 def: "." [Wikipedia:Scalenus_posterior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Posterior scalene" EXACT [] synonym: "posterior scalene" EXACT [] synonym: "Posterior scalene muscle" EXACT [] synonym: "posterior scalene muscle" EXACT [] synonym: "scalenus dorsalis" EXACT [] synonym: "Scalenus posterior" EXACT [] xref: FMA:13387 xref: MA:0002369 xref: ncithesaurus:Scalenus_Dorsalis is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001124 name: scapula alt_id: UBERON:FMA_13394-MA_0001330-ZFA_0000583 def: "." [Wikipedia:Scapula] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Scapula" EXACT [] synonym: "Shoulder blade" EXACT [] synonym: "shoulder blade" EXACT [] xref: AAO:0000751 xref: BTO:0001218 xref: EFO:0001400 xref: FMA:13394 xref: GAID:186 xref: HOG:0001398 xref: MA:0001330 xref: ncithesaurus:Scapula xref: OpenCyc:Mx4rvVji0JwpEbGdrcN5Y29ycA xref: TAO:0000583 xref: ZFA:0000583 is_a: UBERON:0001474 ! bone is_a: UBERON:0003461 ! implied link automatically realized ! shoulder bone relationship: part_of UBERON:0001440 ! skeleton of upper limb relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001125 name: serratus anterior alt_id: UBERON:FMA_13397-MA_0002378 def: "." [Wikipedia:Serratus_anterior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Boxer's muscle" EXACT [] synonym: "boxer's muscle" EXACT [] synonym: "Serratus anterior" EXACT [] synonym: "Serratus anterior muscle" EXACT [] synonym: "serratus anterior muscle" EXACT [] synonym: "serratus ventralis" EXACT [] xref: FMA:13397 xref: HOG:0000679 xref: MA:0002378 xref: ncithesaurus:Serratus_Ventralis xref: OpenCyc:Mx4rvWn_D5wpEbGdrcN5Y29ycA is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001126 name: serratus posterior superior alt_id: UBERON:FMA_13401-MA_0002377 def: "." [Wikipedia:Serratus_posterior_superior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "serratus dorsalis cranialis" EXACT [] synonym: "Serratus posterior superior" EXACT [] synonym: "Superior serratus posterior" EXACT [] synonym: "superior serratus posterior" EXACT [] xref: FMA:13401 xref: MA:0002377 xref: ncithesaurus:Serratus_Dorsalis_Cranialis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001127 name: serratus posterior inferior alt_id: UBERON:FMA_13402-MA_0002376 def: "." [Wikipedia:Serratus_posterior_inferior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Inferior serratus posterior" EXACT [] synonym: "inferior serratus posterior" EXACT [] synonym: "serratus dorsalis caudalis" EXACT [] synonym: "Serratus posterior inferior" EXACT [] xref: FMA:13402 xref: MA:0002376 xref: ncithesaurus:Serratus_Dorsalis_Caudalis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001128 name: sternocleidomastoid alt_id: UBERON:FMA_13407-MA_0002384 def: "." [Wikipedia:Sternocleidomastoid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sternocleidomastoid" EXACT [] synonym: "Sternocleidomastoid muscle" EXACT [] synonym: "sternocleidomastoid muscle" EXACT [] synonym: "sternomastoid" EXACT [] xref: FMA:13407 xref: MA:0002384 xref: ncithesaurus:Sternocleidomastoid_Muscle xref: OpenCyc:Mx4rv2bMg5wpEbGdrcN5Y29ycA is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001129 name: subscapularis alt_id: UBERON:FMA_13413-MA_0002388 def: "." [Wikipedia:Subscapularis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Subscapularis" EXACT [] synonym: "Subscapularis muscle" EXACT [] synonym: "subscapularis muscle" EXACT [] xref: EHDAA:8317 xref: FMA:13413 xref: HOG:0000850 xref: MA:0002388 xref: ncithesaurus:Subscapularis is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001130 name: vertebral column alt_id: UBERON:FMA_13478-MA_0002416-XAO_0003074-ZFA_0001559 def: "." [Wikipedia:Vertebral_column] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Backbone" EXACT [] synonym: "backbone" EXACT [] synonym: "Spinal column" EXACT [] synonym: "spinal column" EXACT [] synonym: "Spine" EXACT [] synonym: "spine" EXACT [] synonym: "Vertebral column" EXACT [] xref: AAO:0000734 xref: BTO:0000818 xref: EFO:0001369 xref: EHDA:10119 xref: EMAPA:16666 xref: FMA:13478 xref: GAID:106 xref: HOG:0001142 xref: MA:0002416 xref: ncithesaurus:Vertebral_Column xref: OpenCyc:Mx4rv6GF55wpEbGdrcN5Y29ycA xref: TAO:0001559 xref: XAO:0003074 xref: ZFA:0001559 is_a: UBERON:0000075 ! subdivision of skeleton relationship: part_of UBERON:0001137 ! back relationship: part_of UBERON:0002090 ! axial skeleton [Term] id: UBERON:0001131 name: vertebral foramen alt_id: UBERON:FMA_13479-MA_0001454 def: "." [Wikipedia:Vertebral_foramen] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "vertebra neural canal" EXACT [] synonym: "Vertebral foramen" EXACT [] xref: FMA:13479 xref: MA:0001454 xref: OpenCyc:Mx4rv_EvQZwpEbGdrcN5Y29ycA is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0001132 name: parathyroid gland alt_id: UBERON:FMA_13890-MA_0000128-MIAA_0000082-XAO_0000167 def: "The parathyroid gland is an organ specialised for secretion of parathyroid hormone[GO]." [Wikipedia:Parathyroid_gland] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "inferior parathyroid" BROAD [] synonym: "parathyroid" EXACT [] synonym: "Parathyroid gland" EXACT [] synonym: "parathyroid secreting cell" RELATED [] synonym: "superior parrathyroid" BROAD [] xref: BTO:0000997 xref: EFO:0000862 xref: FMA:13890 xref: GAID:452 xref: HOG:0001188 xref: MA:0000128 xref: MAT:0000082 xref: MIAA:0000082 xref: ncithesaurus:Parathyroid_Gland xref: XAO:0000167 is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0001133 name: cardiac muscle tissue alt_id: UBERON:FMA_14068-MA_0002441 def: "Muscle composed of cardiac muscle cells that is part of the heart[ZFA]. involuntary striated muscle found in the walls of the heart, specifically the myocardium[Wikipedia]. Tissue which consists of cardiac myocytes surrounded by cardiac endomysium. Examples: Cardiac muscle tissue proper, conducting tissue of heart[FMA]." [FMA:14068] comment: check relationship with myocardium subset: uberon_slim synonym: "cardiac muscle" EXACT [] synonym: "Cardiac muscle tissue" EXACT [] xref: BTO:0000199 xref: FMA:14068 xref: galen:CardiacMuscle xref: galen:CardiacMuscleTissue xref: MA:0002441 xref: ZFA:0005280 is_a: UBERON:0002036 ! striated muscle tissue intersection_of: UBERON:0002385 ! muscle tissue intersection_of: part_of UBERON:0002349 ! myocardium relationship: part_of UBERON:0002349 ! myocardium [Term] id: UBERON:0001134 name: skeletal muscle tissue alt_id: UBERON:FMA_14069-MA_0002439 def: "Tissue which consists of skeletal muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue of biceps, Skeletal muscle tissue of diaphragm." [Wikipedia:Skeletal_muscle] comment: TODO - add skeletal muscle organ? See GO:0060538 skeletal muscle organ development subset: uberon_slim synonym: "skeletal muscle" EXACT [] synonym: "Skeletal muscle tissue" EXACT [] xref: BTO:0001103 xref: EFO:0000888 xref: EHDAA:2923 xref: EHDAA:5035 xref: EHDAA:5043 xref: EHDAA:5978 xref: EHDAA:5984 xref: EHDAA:8277 xref: EHDAA:8291 xref: EHDAA:8326 xref: EHDAA:9146 xref: FMA:14069 xref: HOG:0000319 xref: MA:0002439 xref: MAT:0000302 xref: MIAA:0000302 xref: ncithesaurus:Skeletal_Muscle_Tissue xref: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA xref: XAO:0000174 xref: ZFA:0005277 is_a: UBERON:0002036 ! striated muscle tissue relationship: develops_from UBERON:0003082 ! myotome [Term] id: UBERON:0001135 name: smooth muscle tissue alt_id: UBERON:FMA_14070-MA_0002440 def: "Tissue which consists of smooth muscle fibers surrounded by a reticulum of collagen and elastic fibers. Examples: Arrector muscle of hair, Muscularis mucosae." [Wikipedia:Smooth_muscle_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Involuntary muscle" EXACT [] synonym: "involuntary muscle" EXACT [] synonym: "Non-striated muscle" EXACT [] synonym: "non-striated muscle" EXACT [] synonym: "smooth muscle" EXACT [] synonym: "Smooth muscle tissue" EXACT [] xref: BTO:0001260 xref: EFO:0000889 xref: FMA:14070 xref: HOG:0001246 xref: MA:0000166 xref: MA:0002440 xref: MAT:0000303 xref: ncithesaurus:Smooth_Muscle_Tissue xref: WBbt:0005780 xref: ZFA:0005274 is_a: UBERON:0002385 ! muscle tissue [Term] id: UBERON:0001136 name: mesothelium alt_id: UBERON:FMA_14074-MA_0000565 def: "Simple squamous epithelium of mesodermal origin which lines serous membranes. Examples: mesothelium of pleura, mesothelium of peritoneum. Wikipedia: The mesothelium is a membrane that forms the lining of several body cavities: the pleura (thoracal cavity), peritoneum (abdominal cavity including the mesentery) and pericardium (heart sac). Mesothelial tissue also surrounds the male internal reproductive organs (the tunica vaginalis testis) and covers the internal reproductive organs of women (the tunica serosa uteri). Mesothelium that covers the internal organs is called visceral mesothelium, while the layer that covers the body walls is called the parietal mesothelium." [http://en.wikipedia.org/wiki/Mesothelium, Wikipedia:Mesothelium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Meso-epithelium" EXACT [] synonym: "meso-epithelium" EXACT [] synonym: "Mesothelium" EXACT [] xref: BTO:0002422 xref: EHDAA:2331 xref: EHDAA:2339 xref: EHDAA:2349 xref: EHDAA:295 xref: EHDAA:6073 xref: EHDAA:640 xref: EHDAA:646 xref: FMA:14074 xref: MA:0000565 xref: ncithesaurus:Mesothelium is_a: UBERON:0000487 ! simple squamous epithelium relationship: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0001137 name: back alt_id: UBERON:FMA_14181-MA_0000020 def: "." [Wikipedia:Back] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Back" EXACT [] xref: EFO:0001405 xref: FMA:14181 xref: GAID:30 xref: galen:Back xref: MA:0000020 xref: ncithesaurus:Back xref: OpenCyc:Mx4rvVkEU5wpEbGdrcN5Y29ycA is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0001138 name: superior mesenteric vein alt_id: UBERON:FMA_14332-MA_0002179 def: "." [Wikipedia:Superior_mesenteric_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Superior mesenteric vein" EXACT [] xref: BTO:0002783 xref: EHDAA:5414 xref: FMA:14332 xref: HOG:0000552 xref: MA:0002179 xref: ncithesaurus:Superior_Mesenteric_Vein is_a: UBERON:0002017 ! portal vein [Term] id: UBERON:0001139 name: common iliac vein alt_id: UBERON:FMA_14333-MA_0002143 def: "." [Wikipedia:Common_iliac_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Common iliac vein" EXACT [] synonym: "Common iliac venous tree" EXACT [] synonym: "common iliac venous tree" EXACT [] xref: FMA:14333 xref: galen:CommonIliacVein xref: MA:0002143 xref: ncithesaurus:Common_Iliac_Vein xref: OpenCyc:Mx4rv92CGZwpEbGdrcN5Y29ycA is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001140 name: renal vein alt_id: UBERON:FMA_14334-MA_0002210 def: "." [Wikipedia:Renal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Renal vein" EXACT [] synonym: "Renal venous tree" EXACT [] synonym: "renal venous tree" EXACT [] xref: BTO:0002681 xref: EHDAA:8722 xref: FMA:14334 xref: GAID:544 xref: MA:0002210 xref: MA:0002591 xref: ncithesaurus:Renal_Vein xref: OpenCyc:Mx4rvdUXKJwpEbGdrcN5Y29ycA is_a: UBERON:0001638 ! vein is_a: UBERON:0003517 ! implied link automatically realized ! kidney blood vessel intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0002113 ! kidney relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0001141 name: right renal vein alt_id: UBERON:FMA_14335-MA_0002212 comment: This class was created automatically from a combination of ontologies synonym: "Right renal vein" EXACT [] xref: FMA:14335 xref: MA:0002212 xref: ncithesaurus:Right_Renal_Vein is_a: UBERON:0001140 ! renal vein [Term] id: UBERON:0001142 name: left renal vein alt_id: UBERON:FMA_14336-MA_0002211 def: "." [Wikipedia:Left_renal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Left renal vein" EXACT [] xref: FMA:14336 xref: MA:0002211 xref: ncithesaurus:Left_Renal_Vein is_a: UBERON:0001140 ! renal vein [Term] id: UBERON:0001143 name: hepatic vein alt_id: UBERON:FMA_14337-XAO_0000387-ZFA_0000670 def: "." [Wikipedia:Hepatic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hepatic vein" EXACT [] synonym: "hepatic veins" RELATED [] synonym: "Vena hepatica" EXACT [] synonym: "vena hepatica" EXACT [] xref: FMA:14337 xref: GAID:534 xref: galen:HepaticVein xref: ncithesaurus:Hepatic_Vein xref: OpenCyc:Mx4rv5GivJwpEbGdrcN5Y29ycA xref: TAO:0000670 xref: XAO:0000387 xref: ZFA:0000670 is_a: UBERON:0001638 ! vein is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0002107 ! liver [Term] id: UBERON:0001144 name: testicular vein alt_id: UBERON:FMA_14344-MA_0002234 def: "." [Wikipedia:Testicular_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Testicular vein" EXACT [] synonym: "Testicular venous tree" EXACT [] synonym: "testicular venous tree" EXACT [] xref: BTO:0002678 xref: FMA:14344 xref: MA:0002234 xref: OpenCyc:Mx4rv1WIHpwpEbGdrcN5Y29ycA is_a: UBERON:0001638 ! vein is_a: UBERON:0003848 ! implied link automatically realized ! gonadal vein intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0002117 ! testicle [Term] id: UBERON:0001145 name: ovarian vein alt_id: UBERON:FMA_14346-MA_0002186 def: "." [Wikipedia:Ovarian_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ovarian vein" EXACT [] xref: FMA:14346 xref: MA:0002186 xref: ncithesaurus:Ovarian_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003520 ! implied link automatically realized ! pelvis blood vessel is_a: UBERON:0003848 ! implied link automatically realized ! gonadal vein intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0000992 ! ovary [Term] id: UBERON:0001146 name: suprarenal vein alt_id: UBERON:FMA_14348-MA_0002229 def: "." [Wikipedia:Suprarenal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Suprarenal vein" EXACT [] xref: EHDAA:8731 xref: FMA:14348 xref: MA:0002229 xref: ncithesaurus:Suprarenal_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001147 name: trunk of peripheral nerve alt_id: UBERON:FMA_14383-MA_0000229 comment: This class was created automatically from a combination of ontologies synonym: "peripheral nerve trunk" EXACT [] synonym: "Peripheral neural trunk" EXACT [] synonym: "peripheral neural trunk" EXACT [] synonym: "Trunk of peripheral nerve" EXACT [] xref: FMA:14383 xref: MA:0000229 is_a: UBERON:0002464 ! nerve trunk [Term] id: UBERON:0001148 name: median nerve alt_id: UBERON:FMA_14385-MA_0001168 def: "." [Wikipedia:Median_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Median nerve" EXACT [] xref: EHDAA:5648 xref: FMA:14385 xref: GAID:843 xref: MA:0001168 xref: ncithesaurus:Median_Nerve is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve relationship: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001814 ! brachial nerve plexus [Term] id: UBERON:0001149 name: bare area of liver alt_id: UBERON:FMA_14480-MA_0000359 comment: This class was created automatically from a combination of ontologies synonym: "Area nuda (Hepar)" EXACT [] synonym: "area nuda (hepar)" EXACT [] synonym: "Area nuda hepatis" EXACT [] synonym: "area nuda hepatis" EXACT [] synonym: "Bare area of liver" EXACT [] synonym: "liver bare area" EXACT [] xref: FMA:14480 xref: MA:0000359 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001114 ! right lobe of liver [Term] id: UBERON:0001150 name: body of pancreas alt_id: UBERON:FMA_14518-MA_0000121 def: "." [Wikipedia:Body_of_pancreas] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Body of pancreas" EXACT [] synonym: "pancreas body" EXACT [] synonym: "pancreas corpus" RELATED [] synonym: "Pancreatic body" EXACT [] synonym: "pancreatic body" EXACT [] xref: FMA:14518 xref: HOG:0000451 xref: MA:0000121 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0001151 name: tail of pancreas alt_id: UBERON:FMA_14519-MA_0000123 def: "." [Wikipedia:Tail_of_pancreas] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Left extremity of pancreas" EXACT [] synonym: "left extremity of pancreas" EXACT [] synonym: "pancreas tail" EXACT [] synonym: "Pancreatic tail" EXACT [] synonym: "pancreatic tail" EXACT [] synonym: "Tail of pancreas" EXACT [] xref: FMA:14519 xref: HOG:0000452 xref: MA:0000123 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0001152 name: cystic duct alt_id: UBERON:FMA_14539-MA_0000355 def: "." [Wikipedia:Cystic_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cystic duct" EXACT [] xref: EHDAA:3045 xref: FMA:14539 xref: GAID:290 xref: galen:CysticDuct xref: HOG:0000213 xref: MA:0000355 xref: ncithesaurus:Cystic_Duct xref: OpenCyc:Mx4rveBeC5wpEbGdrcN5Y29ycA xref: ZFA:0005166 is_a: UBERON:0002394 ! bile duct relationship: part_of UBERON:0001173 ! biliary tree [Term] id: UBERON:0001153 name: cecum alt_id: UBERON:FMA_14541-MA_0000334-MIAA_0000288 def: "Pouch, connecting the ileum with the ascending colon of the large intestine. It is separated from the ileum by the ileocecal valve, and is the beginning of the large intestine. It is also separated from the colon by the cecocolic junction." [Wikipedia:Cecum] comment: The cecum is present in mammals and squid,[1] and two ceca are present in most birds (and some reptiles). Most herbivores have a relatively large cecum , hosting a large number of bacteria, which aid in the enzymatic breakdown of plant materials such as cellulose. Exclusive carnivores, whose diets contain little or no plant material, have a reduced cecum; often partially or wholly replaced by the vermiform appendix. It is in the large intestine which is near the small intestine. subset: uberon_slim synonym: "caecum" EXACT [] synonym: "Intestinum crassum caecum" EXACT [] synonym: "intestinum crassum caecum" EXACT [] xref: BTO:0000166 xref: EFO:0000850 xref: FMA:14541 xref: GAID:307 xref: galen:Cecum xref: MA:0000334 xref: MIAA:0000288 xref: ncithesaurus:Cecum is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001156 ! ascending colon [Term] id: UBERON:0001154 name: appendix alt_id: UBERON:FMA_14542-MA_0001540-MIAA_0000287 def: "Organ with organ cavity which is continuous proximally with the cecum and distally terminates in the tip of the appendix. Examples: There is only one appendix.[FMA]. a narrowed, thickened, lymphoid-rich caecal apex [Fisher 2000]." [Wikipedia:Vermiform_appendix] subset: uberon_slim synonym: "apex of cecum" RELATED [] synonym: "Appendix" EXACT [] synonym: "caecal appendix" EXACT [] synonym: "Vermiform appendix" EXACT [] synonym: "vermiform appendix" EXACT [] synonym: "vermix" EXACT [] xref: BTO:0000084 xref: EFO:0000849 xref: FMA:14542 xref: GAID:308 xref: HOG:0001306 xref: MA:0001540 xref: MAT:0000287 xref: MIAA:0000287 xref: ncithesaurus:Vermiform_Appendix xref: OpenCyc:Mx4rvVjGgJwpEbGdrcN5Y29ycA is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001153 ! cecum [Term] id: UBERON:0001155 name: colon alt_id: UBERON:FMA_14543-FMA_7201-MA_0000333-MA_0000335-MAP_0000001-MIAA_0000046-XAO_0000131-XAO_0000243-ZFA_0000706 def: "Last portion of the digestive system in most vertebrates; it extracts water and salt from solid wastes before they are eliminated from the body[WP] In mammals, the colon consists of four sections: the ascending colon, the transverse colon, the descending colon, and the sigmoid colon[WP]. In zebrafish, the posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005." [Wikipedia:Colon_(anatomy), ZFIN:curator] comment: TODO: abstract this such that it legitemately covers all vertebrates subset: uberon_slim synonym: "Colon" EXACT [] synonym: "hindgut" RELATED [] synonym: "Large bowel" EXACT [] synonym: "large bowel" EXACT [] synonym: "posterior intestine" NARROW [] synonym: "posterior intestine - zebrafish" BROAD [] xref: BTO:0000269 xref: EFO:0000361 xref: FMA:14543 xref: GAID:309 xref: galen:Colon xref: HOG:0000648 xref: MA:0000335 xref: MAP:0000001 xref: MAT:0000526 xref: ncithesaurus:Colon xref: OpenCyc:Mx4rvgLEM5wpEbGdrcN5Y29ycA xref: TAO:0000706 xref: XAO:0000243 xref: ZFA:0000706 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0000059 ! large intestine [Term] id: UBERON:0001156 name: ascending colon alt_id: UBERON:FMA_14545-MA_0001541-MIAA_0000311 def: "Organ part which is continuous with the cecum proximally and the transverse colon distally." [Wikipedia:Ascending_colon] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ascending colon" EXACT [] xref: EFO:0000843 xref: FMA:14545 xref: galen:AscendingColon xref: MA:0001541 xref: MAT:0000311 xref: MIAA:0000311 xref: ncithesaurus:Ascending_Colon xref: OpenCyc:Mx4rv3H0FZwpEbGdrcN5Y29ycA is_a: UBERON:0000168 ! segment of colon is_a: UBERON:0001155 ! colon relationship: continuous_with UBERON:0001157 ! transverse colon [Term] id: UBERON:0001157 name: transverse colon alt_id: UBERON:FMA_14546-MA_0001543-MIAA_0000312 def: "." [Wikipedia:Transverse_colon] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Transverse colon" EXACT [] xref: EFO:0000844 xref: FMA:14546 xref: MA:0001543 xref: MAT:0000312 xref: MIAA:0000312 xref: ncithesaurus:Transverse_Colon xref: OpenCyc:Mx4rvg7qyJwpEbGdrcN5Y29ycA is_a: UBERON:0000168 ! segment of colon is_a: UBERON:0001155 ! colon relationship: continuous_with UBERON:0001158 ! descending colon [Term] id: UBERON:0001158 name: descending colon alt_id: UBERON:FMA_14547-MA_0001542-MIAA_0000313 def: "." [Wikipedia:Descending_colon] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Descending colon" EXACT [] xref: EFO:0000845 xref: FMA:14547 xref: galen:DescendingColon xref: MA:0001542 xref: MAT:0000313 xref: MIAA:0000313 xref: ncithesaurus:Descending_Colon is_a: UBERON:0000168 ! segment of colon is_a: UBERON:0001155 ! colon relationship: continuous_with UBERON:0001159 ! sigmoid colon [Term] id: UBERON:0001159 name: sigmoid colon alt_id: UBERON:FMA_14548-MIAA_0000314 def: "." [Wikipedia:Sigmoid_colon] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sigmoid colon" EXACT [] xref: EFO:0000846 xref: FMA:14548 xref: MAT:0000314 xref: MIAA:0000314 xref: ncithesaurus:Sigmoid_Colon is_a: UBERON:0000168 ! segment of colon relationship: continuous_with UBERON:0001052 ! rectum relationship: part_of UBERON:0001008 ! urinary system [Term] id: UBERON:0001160 name: fundus of stomach alt_id: UBERON:FMA_14559-MA_0001612 def: "The fundus is the portion of the stomach that lies above the cardiac notch[GO]." [GO:0014825, Wikipedia:Fundus_of_stomach] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Fundus gastricus (ventricularis)" EXACT [] synonym: "fundus gastricus (ventricularis)" EXACT [] synonym: "Fundus of stomach" EXACT [] synonym: "Gastric fundus" EXACT [] synonym: "gastric fundus" RELATED [] synonym: "stomach fundus" EXACT [] xref: BTO:0000502 xref: EFO:0002554 xref: FMA:14559 xref: GAID:320 xref: galen:GastricFundus xref: HOG:0000421 xref: MA:0001612 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0001161 name: body of stomach alt_id: UBERON:FMA_14560-MA_0002559 def: "The body of stomach is the part of the stomach that lies between the fundus above and the pyloric antrum below; its boundaries are poorly defined[GO]." [GO:0014845, Wikipedia:Body_of_stomach] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Body of stomach" EXACT [] synonym: "Corpus gastricum (ventriculare)" EXACT [] synonym: "corpus gastricum (ventriculare)" EXACT [] synonym: "Gastric body" EXACT [] synonym: "gastric body" EXACT [] synonym: "Gastric corpus" EXACT [] synonym: "gastric corpus" RELATED [] synonym: "stomach body" EXACT [] xref: BTO:0000505 xref: FMA:14560 xref: galen:GastricCorpus xref: MA:0002559 xref: ncithesaurus:Body_of_Stomach is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0001162 name: cardia of stomach alt_id: UBERON:FMA_14561-MA_0001609 comment: This class was created automatically from a combination of ontologies synonym: "Cardia of stomach" EXACT [] synonym: "Cardial part of stomach" EXACT [] synonym: "cardial part of stomach" EXACT [] synonym: "Gastric cardia" EXACT [] synonym: "gastric cardia" EXACT [] synonym: "Pars cardiaca (gaster)" EXACT [] synonym: "pars cardiaca (gaster)" EXACT [] synonym: "stomach cardiac region" EXACT [] xref: FMA:14561 xref: MA:0001609 xref: ncithesaurus:Cardia is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0001163 name: lesser curvature of stomach alt_id: UBERON:FMA_14572-MA_0001616 def: "." [Wikipedia:Lesser_curvature_of_stomach] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lesser curvature of stomach" EXACT [] synonym: "stomach lesser curvature" EXACT [] xref: FMA:14572 xref: galen:LesserCurvatureOfStomach xref: MA:0001616 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0001164 name: greater curvature of stomach alt_id: UBERON:FMA_14574-MA_0001615 def: "." [Wikipedia:Greater_curvature_of_stomach] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Greater curvature of stomach" EXACT [] synonym: "stomach greater curvature" EXACT [] xref: FMA:14574 xref: galen:GreaterCurvatureOfStomach xref: MA:0001615 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0001165 name: pyloric antrum alt_id: UBERON:FMA_14579-MA_0001624 def: "." [Wikipedia:Pyloric_antrum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Antrum of stomach" EXACT [] synonym: "antrum of stomach" EXACT [] synonym: "Gastric antrum" EXACT [] synonym: "gastric antrum" RELATED [] synonym: "Pyloric antrum" EXACT [] synonym: "stomach antrum" RELATED [] synonym: "stomach pyloric antrum" EXACT [] xref: BTO:0001732 xref: EFO:0002555 xref: FMA:14579 xref: GAID:332 xref: MA:0001624 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0001166 name: pylorus alt_id: UBERON:FMA_14581-MA_0002560 def: "." [Wikipedia:Pylorus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pyloric part of stomach" EXACT [] synonym: "pyloric part of stomach" EXACT [] synonym: "Pylorus" EXACT [] synonym: "stomach pyloric region" EXACT [] xref: FMA:14581 xref: GAID:333 xref: MA:0002560 xref: ncithesaurus:Pylorus is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0001167 name: wall of stomach alt_id: UBERON:FMA_14582-MA_0002692 comment: This class was created automatically from a combination of ontologies synonym: "Gastric wall" EXACT [] synonym: "gastric wall" EXACT [] synonym: "Stomach wall" EXACT [] synonym: "stomach wall" EXACT [] synonym: "Wall of stomach" EXACT [] xref: FMA:14582 xref: MA:0002692 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0003697 ! implied link automatically realized ! abdominal wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000945 ! stomach relationship: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0001168 name: wall of small intestine alt_id: UBERON:FMA_14615-MA_0002696 comment: This class was created automatically from a combination of ontologies synonym: "Small intestinal wall" EXACT [] synonym: "small intestinal wall" EXACT [] synonym: "small intestine wall" EXACT [] synonym: "Wall of small intestine" EXACT [] xref: FMA:14615 xref: MA:0002696 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0003697 ! implied link automatically realized ! abdominal wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0001169 name: wall of large intestine alt_id: UBERON:FMA_14619-MA_0002695 comment: This class was created automatically from a combination of ontologies synonym: "Large intestinal wall" EXACT [] synonym: "large intestinal wall" EXACT [] synonym: "large intestine wall" EXACT [] synonym: "Wall of large intestine" EXACT [] xref: FMA:14619 xref: MA:0002695 is_a: UBERON:0000060 ! anatomical wall is_a: UBERON:0001262 ! implied link automatically realized ! wall of intestine intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001262 ! wall of intestine [Term] id: UBERON:0001170 name: mesentery of small intestine alt_id: UBERON:FMA_14643-MA_0001555 comment: This class was created automatically from a combination of ontologies synonym: "Mesentery of small intestine" EXACT [] synonym: "Mesentery proper" EXACT [] synonym: "mesentery proper" EXACT [] synonym: "Small intestinal mesentery" EXACT [] synonym: "small intestinal mesentery" EXACT [] synonym: "small intestine mesentery" EXACT [] xref: FMA:14643 xref: MA:0001555 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001206 ! implied link automatically realized ! serosa of small intestine is_a: UBERON:0002095 ! mesentery is_a: UBERON:0003393 ! implied link automatically realized ! mesentery of urinary system intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0001178 ! visceral peritoneum [Term] id: UBERON:0001171 name: portal lobule alt_id: UBERON:FMA_14653-MA_0002498 comment: This class was created automatically from a combination of ontologies synonym: "Portal lobule" EXACT [] xref: FMA:14653 xref: MA:0002498 xref: ncithesaurus:Portal_Lobule is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001280 ! liver parenchyma [Term] id: UBERON:0001172 name: hepatic acinus alt_id: UBERON:FMA_14654-MA_0002496 comment: This class was created automatically from a combination of ontologies synonym: "Hepatic acinus" EXACT [] synonym: "liver acinus" EXACT [] synonym: "Portal acinus" EXACT [] synonym: "portal acinus" EXACT [] xref: FMA:14654 xref: MA:0002496 xref: ncithesaurus:Liver_Acinus is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001171 ! portal lobule [Term] id: UBERON:0001173 name: biliary tree alt_id: UBERON:FMA_14665-XAO_0000455 def: "Hollow tree organ, the organ parts of which consists of the bile ducts. Examples: There is only one biliary tree." [Wikipedia:Biliary_tree] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Biliary tree" EXACT [] xref: FMA:14665 xref: XAO:0000455 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:0001174 name: common bile duct alt_id: UBERON:FMA_14667-MA_0001631 def: "." [Wikipedia:Common_bile_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Common bile duct" EXACT [] synonym: "Ductus choledochus (biliaris)" EXACT [] synonym: "ductus choledochus (biliaris)" EXACT [] xref: EHDAA:3981 xref: FMA:14667 xref: GAID:282 xref: galen:CommonBileDuct xref: HOG:0000214 xref: MA:0001631 xref: ncithesaurus:Common_Bile_Duct xref: ZFA:0005165 is_a: UBERON:0002394 ! bile duct relationship: part_of UBERON:0001173 ! biliary tree [Term] id: UBERON:0001175 name: common hepatic duct alt_id: UBERON:FMA_14668-ZFA_0001100 def: "A duct that carries bile from the liver to the small intestine. Crosnier et al. 2005" [Wikipedia:Intestinal_villus, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Intestinal villus" EXACT [] synonym: "Villus intestinalis (Intestinum tenue)" EXACT [] synonym: "villus intestinalis (intestinum tenue)" EXACT [] xref: FMA:15072 xref: TAO:0005125 xref: ZFA:0005125 is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0001277 ! intestinal epithelium [Term] id: UBERON:0001214 name: pancreatic tributary of splenic vein alt_id: UBERON:FMA_15388-MA_0002189 def: "." [Wikipedia:Pancreatic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pancreatic tributary of splenic vein" EXACT [] synonym: "Pancreatic vein" EXACT [] synonym: "pancreatic vein" EXACT [] xref: FMA:15388 xref: MA:0002189 xref: ncithesaurus:Pancreatic_Vein is_a: UBERON:0002017 ! portal vein [Term] id: UBERON:0001215 name: inferior mesenteric vein alt_id: UBERON:FMA_15391-MA_0002178 def: "." [Wikipedia:Inferior_mesenteric_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Inferior mesenteric vein" EXACT [] xref: BTO:0002782 xref: EHDAA:8712 xref: FMA:15391 xref: HOG:0001118 xref: MA:0002178 xref: ncithesaurus:Inferior_Mesenteric_Vein xref: OpenCyc:Mx4rvcV53ZwpEbGdrcN5Y29ycA is_a: UBERON:0002017 ! portal vein [Term] id: UBERON:0001216 name: jejunal vein alt_id: UBERON:FMA_15402-MA_0002153 comment: This class was created automatically from a combination of ontologies synonym: "Jejunal vein" EXACT [] xref: FMA:15402 xref: MA:0002153 is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0001138 ! superior mesenteric vein [Term] id: UBERON:0001217 name: ileal vein alt_id: UBERON:FMA_15405-MA_0002140 comment: This class was created automatically from a combination of ontologies synonym: "Ileal vein" EXACT [] xref: FMA:15405 xref: MA:0002140 xref: ncithesaurus:Ileal_Vein is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0001138 ! superior mesenteric vein [Term] id: UBERON:0001218 name: middle colic vein alt_id: UBERON:FMA_15406-MA_0002181 def: "." [Wikipedia:Middle_colic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Middle colic vein" EXACT [] synonym: "Vena colica media (intermedia)" EXACT [] synonym: "vena colica media (intermedia)" EXACT [] xref: FMA:15406 xref: MA:0002181 is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0001138 ! superior mesenteric vein [Term] id: UBERON:0001219 name: ileocolic vein alt_id: UBERON:FMA_15408-MA_0002141 def: "." [Wikipedia:Ileocolic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ileocolic vein" EXACT [] xref: FMA:15408 xref: MA:0002141 xref: ncithesaurus:Ileocolic_Vein is_a: UBERON:0002017 ! portal vein relationship: part_of UBERON:0001138 ! superior mesenteric vein [Term] id: UBERON:0001220 name: quadratus lumborum alt_id: UBERON:FMA_15569-MA_0002362 def: "." [Wikipedia:Quadratus_lumborum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Muscle of posterior abdominal wall" EXACT [] synonym: "muscle of posterior abdominal wall" EXACT [] synonym: "Quadratus lumborum" EXACT [] xref: FMA:15569 xref: MA:0002362 xref: ncithesaurus:Quadratus_Lumborum is_a: UBERON:0002378 ! muscle of abdomen [Term] id: UBERON:0001221 name: transversus abdominis alt_id: UBERON:FMA_15570-MA_0002396 def: "." [Wikipedia:Transversus_abdominis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Transverse abdominal" EXACT [] synonym: "transverse abdominal" EXACT [] synonym: "Transversus abdominis" EXACT [] xref: EHDAA:8254 xref: FMA:15570 xref: HOG:0000845 xref: MA:0002396 xref: ncithesaurus:Transversus_Abdominis is_a: UBERON:0002461 ! anterior abdominal wall muscle [Term] id: UBERON:0001222 name: right ureter alt_id: UBERON:FMA_15571-MA_0001685 comment: This class was created automatically from a combination of ontologies synonym: "Right ureter" EXACT [] xref: FMA:15571 xref: MA:0001685 xref: ncithesaurus:Right_Ureter is_a: UBERON:0000056 ! ureter [Term] id: UBERON:0001223 name: left ureter alt_id: UBERON:FMA_15572-MA_0001684 comment: This class was created automatically from a combination of ontologies synonym: "Left ureter" EXACT [] xref: FMA:15572 xref: MA:0001684 xref: ncithesaurus:Left_Ureter is_a: UBERON:0000056 ! ureter [Term] id: UBERON:0001224 name: renal pelvis alt_id: UBERON:FMA_15575-MA_0000374 def: "funnel-like dilated proximal part of the ureter in the kidney." [Wikipedia:Renal_pelvis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "kidney pelvis" EXACT [] synonym: "Pelvis of ureter" EXACT [] synonym: "pelvis of ureter" EXACT [] synonym: "Renal pelvis" EXACT [] xref: FMA:15575 xref: GAID:426 xref: MA:0000374 xref: ncithesaurus:Renal_Pelvis is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0000056 ! ureter relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0001225 name: cortex of kidney alt_id: UBERON:FMA_15581-MA_0000372 def: "Region of parenchyma of kidney representing the outer portion." [Wikipedia:Kidney_cortex] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cortex of kidney" EXACT [] synonym: "kidney cortex" EXACT [] synonym: "Renal cortex" EXACT [] synonym: "renal cortex" RELATED [] xref: BTO:0001166 xref: FMA:15581 xref: GAID:424 xref: galen:CortexOfKidney xref: MA:0000372 xref: ncithesaurus:Renal_Cortex is_a: UBERON:0001851 ! cortex intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0002113 ! kidney relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0001226 name: major calyx alt_id: UBERON:FMA_15613-MA_0001644 def: "." [Wikipedia:Major_calyx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Major calix" EXACT [] synonym: "major calix" EXACT [] synonym: "Major calyx" EXACT [] xref: FMA:15613 xref: MA:0001644 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001224 ! renal pelvis [Term] id: UBERON:0001227 name: minor calyx alt_id: UBERON:FMA_15614-MA_0001645 def: "." [Wikipedia:Minor_calyx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Minor calix" EXACT [] synonym: "minor calix" EXACT [] synonym: "Minor calyx" EXACT [] xref: FMA:15614 xref: MA:0001645 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001224 ! renal pelvis [Term] id: UBERON:0001228 name: renal papilla alt_id: UBERON:FMA_15622-MA_0002730 def: "." [Wikipedia:Renal_papilla] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Renal papilla" EXACT [] xref: BTO:0003925 xref: FMA:15622 xref: MA:0002730 xref: ncithesaurus:Renal_Papilla is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001224 ! renal pelvis relationship: part_of UBERON:0001294 ! inner medulla of kidney [Term] id: UBERON:0001229 name: renal corpuscle alt_id: UBERON:FMA_15625-MA_0000376 def: "." [Wikipedia:Renal_corpuscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Corpusculum renale" EXACT [] synonym: "corpusculum renale" EXACT [] synonym: "cortical renal corpuscle" RELATED [] synonym: "malphighian corpuscle" RELATED [] synonym: "Malphigian corpuscle" EXACT [] synonym: "malphigian corpuscle" EXACT [] synonym: "Renal corpuscle" EXACT [] xref: BTO:0000333 xref: FMA:15625 xref: HOG:0001262 xref: MA:0000376 xref: ncithesaurus:Renal_Corpuscle xref: ZFA:0005281 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001225 ! cortex of kidney relationship: part_of UBERON:0001285 ! nephron [Term] id: UBERON:0001230 name: glomerular capsule alt_id: UBERON:FMA_15626-MA_0001660 def: "." [Wikipedia:Glomerular_capsule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bowman's capsule" EXACT [] synonym: "bowman's capsule" RELATED [] synonym: "Glomerular capsule" EXACT [] xref: FMA:15626 xref: MA:0001660 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001229 ! renal corpuscle [Term] id: UBERON:0001231 name: renal tubule alt_id: UBERON:FMA_15627-ZFA_0001287 def: "." [Wikipedia:Renal_tubule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Renal tubule" EXACT [] synonym: "renal tubules" RELATED [] synonym: "Tubulus renalis" EXACT [] synonym: "tubulus renalis" EXACT [] xref: BTO:0000343 xref: FMA:15627 xref: MA:0000377 xref: ncithesaurus:Renal_Tubule xref: TAO:0001287 xref: ZFA:0001287 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001285 ! nephron [Term] id: UBERON:0001232 name: collecting duct of renal tubule alt_id: UBERON:FMA_15628-MA_0000371 def: "." [Wikipedia:Renal_collecting_tubule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Collecting duct of renal tubule" EXACT [] synonym: "collecting tubule" RELATED [] synonym: "kidney collecting duct" EXACT [] synonym: "Renal collecting tubule" EXACT [] synonym: "renal collecting tubule" EXACT [] synonym: "Tubulus renalis colligens" EXACT [] synonym: "tubulus renalis colligens" EXACT [] xref: FMA:15628 xref: MA:0000371 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0001233 name: right adrenal gland alt_id: UBERON:FMA_15629-MA_0000719 comment: This class was created automatically from a combination of ontologies synonym: "Right adrenal gland" EXACT [] synonym: "Right suprarenal gland" EXACT [] synonym: "right suprarenal gland" EXACT [] xref: FMA:15629 xref: MA:0000719 xref: ncithesaurus:Right_Adrenal_Gland is_a: UBERON:0002369 ! adrenal gland [Term] id: UBERON:0001234 name: left adrenal gland alt_id: UBERON:FMA_15630-MA_0000718 comment: This class was created automatically from a combination of ontologies synonym: "Left adrenal gland" EXACT [] synonym: "Left suprarenal gland" EXACT [] synonym: "left suprarenal gland" EXACT [] xref: FMA:15630 xref: MA:0000718 xref: ncithesaurus:Left_Adrenal_Gland is_a: UBERON:0002369 ! adrenal gland [Term] id: UBERON:0001235 name: adrenal cortex alt_id: UBERON:FMA_15632-MA_0000118-XAO_0000165 def: "." [Wikipedia:Adrenal_cortex] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Adrenal cortex" EXACT [] synonym: "adrenal gland cortex" EXACT [] synonym: "Cortex (Glandula suprarenalis)" EXACT [] synonym: "cortex (glandula suprarenalis)" EXACT [] synonym: "Cortex of adrenal gland" EXACT [] synonym: "cortex of adrenal gland" EXACT [] synonym: "Cortex of suprarenal gland" EXACT [] synonym: "cortex of suprarenal gland" EXACT [] synonym: "interrenal tissue" RELATED [] synonym: "Suprarenal cortex" EXACT [] synonym: "suprarenal cortex" EXACT [] xref: BTO:0000045 xref: EFO:0000237 xref: FMA:15632 xref: GAID:447 xref: HOG:0001481 xref: MA:0000118 xref: MAT:0000494 xref: ncithesaurus:Adrenal_Cortex xref: XAO:0000165 is_a: UBERON:0001851 ! cortex intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0002369 ! adrenal gland relationship: part_of UBERON:0002369 ! adrenal gland [Term] id: UBERON:0001236 name: adrenal medulla alt_id: UBERON:FMA_15633-MA_0000119-XAO_0000166 def: "." [Wikipedia:Adrenal_medulla] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "adrenal gland medulla" EXACT [] synonym: "Adrenal medulla" EXACT [] synonym: "chromaffin cells" RELATED [] synonym: "Medulla (Glandula suprarenalis)" EXACT [] synonym: "medulla (glandula suprarenalis)" EXACT [] synonym: "Medulla of suprarenal gland" EXACT [] synonym: "medulla of suprarenal gland" EXACT [] synonym: "Suprarenal medulla" EXACT [] synonym: "suprarenal medulla" EXACT [] xref: BTO:0000049 xref: EFO:0000852 xref: FMA:15633 xref: GAID:451 xref: HOG:0001378 xref: MA:0000119 xref: MAT:0000495 xref: ncithesaurus:Adrenal_Medulla xref: XAO:0000166 is_a: UBERON:0000958 ! medulla intersection_of: UBERON:0000958 ! medulla intersection_of: part_of UBERON:0002369 ! adrenal gland relationship: part_of UBERON:0002369 ! adrenal gland [Term] id: UBERON:0001237 name: paraaortic body alt_id: UBERON:FMA_15647-MA_0001137 def: "." [Wikipedia:Organ_of_Zuckerkandl] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Organ of Zuckerkandl" EXACT [] synonym: "organ of zuckerkandl" EXACT [] synonym: "Para-aortic body" EXACT [] synonym: "para-aortic body" RELATED [] synonym: "Paraaortic body" EXACT [] synonym: "paraganglia of zuckerkandl" RELATED [] xref: FMA:15647 xref: GAID:444 xref: MA:0001137 is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0001238 name: lamina propria of small intestine alt_id: UBERON:FMA_15651-MA_0001554 def: "Lamina propria that is part_of the small intestine." [GOC:Obol] synonym: "Lamina propria mucosae of small intestine" EXACT [] synonym: "lamina propria mucosae of small intestine" EXACT [] synonym: "Lamina propria of mucosa of small intestine" EXACT [] synonym: "lamina propria of mucosa of small intestine" EXACT [] synonym: "Lamina propria of small intestine" EXACT [] synonym: "Small intestine lamina propria" EXACT [] synonym: "small intestine lamina propria" EXACT [] xref: FMA:15651 xref: MA:0001554 xref: ncithesaurus:Small_Intestinal_Lamina_Propria is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0001204 ! mucosa of small intestine [Term] id: UBERON:0001239 name: muscularis mucosae of large intestine alt_id: UBERON:FMA_15655-MA_0002689 comment: This class was created automatically from a combination of ontologies synonym: "Lamina muscularis of large intestine mucosa" EXACT [] synonym: "lamina muscularis of large intestine mucosa" EXACT [] synonym: "Lamina muscularis of large intestine mucous membrane" EXACT [] synonym: "lamina muscularis of large intestine mucous membrane" EXACT [] synonym: "large intestine muscularis mucosa" EXACT [] synonym: "Muscularis mucosae of large intestine" EXACT [] xref: FMA:15655 xref: MA:0002689 xref: ncithesaurus:Large_Intestinal_Muscularis_Mucosa is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of UBERON:0001207 ! mucosa of large intestine relationship: part_of UBERON:0001240 ! muscularis mucosae of intestine [Term] id: UBERON:0001240 name: muscularis mucosae of intestine alt_id: UBERON:FMA_15691-MA_0002694 comment: This class was created automatically from a combination of ontologies synonym: "intestine muscularis mucosa" EXACT [] synonym: "Muscularis mucosae of intestine" EXACT [] xref: FMA:15691 xref: MA:0002694 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001241 name: crypt of lieberkuhn of small intestine alt_id: UBERON:FMA_15693-MA_0001552 comment: This class was created automatically from a combination of ontologies synonym: "Crypt of Lieberkuhn of small intestine" EXACT [] synonym: "Small intestinal crypt of Lieberkuhn" EXACT [] synonym: "small intestinal crypt of lieberkuhn" EXACT [] synonym: "small intestine crypt of lieberkuhn" EXACT [] xref: FMA:15693 xref: MA:0001552 xref: ncithesaurus:Small_Intestinal_Crypt_of_Lieberkuhn is_a: UBERON:0001983 ! crypt of lieberkuhn intersection_of: UBERON:0001983 ! crypt of lieberkuhn intersection_of: part_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0001242 name: intestinal mucosa alt_id: UBERON:FMA_15695-MA_0001537 def: "." [Wikipedia:Intestinal_mucosa] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Intestinal mucosa" EXACT [] synonym: "intestine mucosa" EXACT [] synonym: "Mucosa of intestine" EXACT [] synonym: "mucosa of intestine" EXACT [] xref: BTO:0000642 xref: FMA:15695 xref: GAID:296 xref: MA:0001537 xref: ncithesaurus:Intestinal_Mucosa is_a: UBERON:0000344 ! implied link automatically realized ! mucosa is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0001262 ! wall of intestine [Term] id: UBERON:0001243 name: serosa of intestine alt_id: UBERON:FMA_15701-MA_0001538 comment: TODO - check serosa/peritoneum synonym: "Intestinal serosa" EXACT [] synonym: "intestinal serosa" EXACT [] synonym: "intestine serosa" EXACT [] synonym: "Serosa of intestine" EXACT [] synonym: "Visceral peritoneum of intestine" EXACT [] synonym: "visceral peritoneum of intestine" EXACT [] xref: FMA:15701 xref: MA:0001538 is_a: UBERON:0000042 ! serous membrane intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0001262 ! wall of intestine relationship: part_of UBERON:0001262 ! wall of intestine [Term] id: UBERON:0001244 name: internal anal sphincter alt_id: UBERON:FMA_15710-MA_0001534 def: "." [Wikipedia:Internal_anal_sphincter] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Circular layer of anal muscularis externa" EXACT [] synonym: "circular layer of anal muscularis externa" EXACT [] synonym: "Circular layer of muscularis externa of anal canal" EXACT [] synonym: "circular layer of muscularis externa of anal canal" EXACT [] synonym: "Circular layer of muscularis propria of anal canal" EXACT [] synonym: "circular layer of muscularis propria of anal canal" EXACT [] synonym: "Circular muscle layer of anal canal" EXACT [] synonym: "circular muscle layer of anal canal" EXACT [] synonym: "Internal anal sphincter" EXACT [] xref: FMA:15710 xref: MA:0001534 xref: ncithesaurus:Internal_Anal_Sphincter is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001353 ! anal part of perineum [Term] id: UBERON:0001245 name: anus alt_id: UBERON:FMA_15711-MA_0000331-ZFA_0000066 def: "Orifice at the opposite end of an animal's digestive tract from the mouth. Its function is to expel feces, unwanted semi-solid matter produced during digestion, which, depending on the type of animal, may be one or more of: matter which the animal cannot digest, such as bones; food material after all the nutrients have been extracted, for example cellulose or lignin; ingested matter which would be toxic if it remained in the digestive tract; and dead or excess gut bacteria and other endosymbionts." [Wikipedia:Anus, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anal orifice" EXACT [] synonym: "anal orifice" EXACT [] synonym: "Anus" EXACT [] synonym: "proctodeum" EXACT [] xref: BTO:0001680 xref: FMA:15711 xref: GAID:312 xref: galen:Anus xref: HOG:0000139 xref: MA:0000331 xref: ncithesaurus:Proctodeum xref: OpenCyc:Mx4rvVjaEZwpEbGdrcN5Y29ycA xref: TAO:0000066 xref: WBbt:0005364 xref: ZFA:0000066 is_a: UBERON:0000161 ! orifice relationship: develops_from UBERON:0000100 ! blastopore relationship: part_of UBERON:0001353 ! anal part of perineum relationship: part_of UBERON:0001555 ! gut [Term] id: UBERON:0001246 name: interlobular bile duct alt_id: UBERON:FMA_15767-MA_0002668 comment: This class was created automatically from a combination of ontologies synonym: "Interlobular bile duct" EXACT [] xref: FMA:15767 xref: MA:0002668 xref: ncithesaurus:Interlobular_Bile_Duct is_a: UBERON:0002394 ! bile duct relationship: part_of UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001279 ! portal triad [Term] id: UBERON:0001247 name: falciform ligament alt_id: UBERON:FMA_15823-MA_0001622 def: "." [Wikipedia:Falciform_ligament] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Falciform ligament" EXACT [] synonym: "Falciform ligament of liver" EXACT [] synonym: "falciform ligament of liver" EXACT [] synonym: "Ligamentum falciforme (Hepatis)" EXACT [] synonym: "ligamentum falciforme (hepatis)" EXACT [] xref: EHDAA:4856 xref: FMA:15823 xref: HOG:0000355 xref: MA:0001622 xref: ncithesaurus:Falciform_Ligament is_a: UBERON:0000211 ! ligament is_a: UBERON:0002095 ! mesentery is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue [Term] id: UBERON:0001248 name: hilum of spleen alt_id: UBERON:FMA_15841-MA_0002670 def: "." [Wikipedia:Splenic_hilum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hilum of spleen" EXACT [] synonym: "spleen hilum" EXACT [] synonym: "Splenic hilum" EXACT [] synonym: "splenic hilum" EXACT [] xref: FMA:15841 xref: MA:0002670 xref: ncithesaurus:Splenic_Hilum is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0001249 name: lymphoid nodule of spleen alt_id: UBERON:FMA_15843-MA_0002672 def: "A lymphoid nodule that is part_of a spleen" [GOC:Obol] synonym: "Lymphatic follicle of spleen" EXACT [] synonym: "lymphatic follicle of spleen" EXACT [] synonym: "Lymphoid follicle of spleen" EXACT [] synonym: "lymphoid follicle of spleen" EXACT [] synonym: "Lymphoid nodule of spleen" EXACT [] synonym: "Malpighian body" EXACT [] synonym: "malpighian body" EXACT [] synonym: "spleen lymphoid follicle" EXACT [] synonym: "spleen lymphoid nodule" RELATED [] synonym: "Splenic lymphatic follicle" EXACT [] synonym: "splenic lymphatic follicle" EXACT [] xref: FMA:15843 xref: MA:0002672 is_a: UBERON:0000444 ! implied link automatically realized ! lymphoid follicle is_a: UBERON:0001744 ! lymphoid tissue intersection_of: UBERON:0000444 ! lymphoid follicle intersection_of: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:0001959 ! white pulp of spleen [Term] id: UBERON:0001250 name: red pulp of spleen alt_id: UBERON:FMA_15844-MA_0000756 def: "Red pulp of the spleen is composed of connective tissue known as the cords of Billroth and many splenic sinuses that are engorged with blood, giving it a red color. Its primary function is to filter the blood of antigens, microorganisms, and defective or worn-out red blood cells. The spleen is made of red pulp and white pulp, separated by the marginal zone; 76-79% of a normal spleen is red pulp. Unlike white pulp, which mainly contains lymphocytes such as T cells, red pulp is made up of several different types of blood cells, including platelets, granulocytes, red blood cells, and plasma." [Wikipedia:Red_pulp] subset: uberon_slim synonym: "red pulp" EXACT [] synonym: "Red pulp of spleen" EXACT [] synonym: "spleen red pulp" EXACT [] synonym: "Splenic red pulp" EXACT [] synonym: "splenic red pulp" EXACT [] xref: FMA:15844 xref: MA:0000756 xref: ncithesaurus:Splenic_Red_Pulp is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0001251 name: marginal zone of spleen alt_id: UBERON:FMA_15852-MA_0000755 def: "region at the interface between the non-lymphoid red pulp and the lymphoid white-pulp of the spleen." [Wikipedia:Marginal_zone] comment: WP says - (Some sources consider it to be the part of red pulp which borders on the white pulp, while other sources consider it to be neither red pulp nor white pulp.) - we use the adjacency relation here so it overlaps neither. FMA considers this an anatomical line synonym: "Junctional zone of spleen" EXACT [] synonym: "junctional zone of spleen" EXACT [] synonym: "marginal zone" BROAD [Wikipedia:Marginal_zone] synonym: "Marginal zone of spleen" EXACT [] synonym: "spleen marginal zone" EXACT [] xref: FMA:15852 xref: MA:0000755 is_a: UBERON:0000061 ! anatomical structure relationship: adjacent_to UBERON:0001250 ! red pulp of spleen relationship: adjacent_to UBERON:0001959 ! white pulp of spleen relationship: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0001252 name: adventitia of ureter alt_id: UBERON:FMA_15892-MA_0002652 comment: This class was created automatically from a combination of ontologies synonym: "Adventitia of ureter" EXACT [] synonym: "External adventitia of ureter" EXACT [] synonym: "external adventitia of ureter" EXACT [] synonym: "ureter adventitia" EXACT [] synonym: "Ureteral adventitia" EXACT [] synonym: "ureteral adventitia" EXACT [] xref: FMA:15892 xref: MA:0002652 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001008 ! urinary system [Term] id: UBERON:0001253 name: lamina propria of ureter alt_id: UBERON:FMA_15896-MA_0002653 comment: This class was created automatically from a combination of ontologies synonym: "Lamina propria of ureter" EXACT [] synonym: "ureter lamina propria" EXACT [] xref: FMA:15896 xref: MA:0002653 is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0000056 ! ureter relationship: part_of UBERON:0001008 ! urinary system [Term] id: UBERON:0001254 name: transitional epithelium of ureter alt_id: UBERON:FMA_15897-MA_0002655 comment: This class was created automatically from a combination of ontologies synonym: "Transitional epithelium of ureter" EXACT [] synonym: "ureter transitional epithelium" RELATED [] synonym: "ureter urothelium" EXACT [] synonym: "Urothelium of ureter" EXACT [] synonym: "urothelium of ureter" EXACT [] xref: FMA:15897 xref: MA:0002655 is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0001255 name: urinary bladder alt_id: UBERON:FMA_15900-FMA_7203-MA_0000368-MA_0000380-MIAA_0000118-MIAA_0000119-MIAA_0000122-WBbt_0005775-XAO_0000154-ZFA_0000529 def: "Organ with organ cavity which is continuous proximally with the right and left ureters and distally with the urethra. Examples: There is only one urinary bladder. // Four processes (canals) of the excretory canal cell each contain a central collecting lumen which feeds to a central lumenal canal in the cell body; the central canal forms a specialized membrane to release fluids into the excretory duct. These five canals form a continuous H-shaped channel which extends almost the full length of the body, generally in contact with the lateral hypodermis and the pseudocoelom." [WA:dh, Wikipedia:Urinary_bladder] comment: This class was created automatically from a combination of ontologies. TODO: split subset: uberon_slim synonym: "Bladder" EXACT [] synonym: "bladder" EXACT [] synonym: "excretory canal" BROAD [] synonym: "Urinary bladder" EXACT [] xref: AAO:0000623 xref: BTO:0000123 xref: EFO:0000290 xref: EHDAA:9328 xref: FMA:15900 xref: GAID:0000004 xref: HOG:0000740 xref: MA:0000380 xref: MAT:0000122 xref: MIAA:0000122 xref: ncithesaurus:Bladder xref: OpenCyc:Mx4rvVjMmZwpEbGdrcN5Y29ycA xref: XAO:0000154 is_a: UBERON:0000489 ! cavitated compound organ is_a: UBERON:0002075 ! viscus relationship: develops_from UBERON:0000164 ! urogenital sinus relationship: part_of UBERON:0001556 ! lower urinary tract relationship: part_of UBERON:0002323 ! body cavity relationship: part_of UBERON:0002355 ! pelvis relationship: part_of UBERON:0002405 ! immune system [Term] id: UBERON:0001256 name: wall of urinary bladder alt_id: UBERON:FMA_15902-MA_0002493 comment: This class was created automatically from a combination of ontologies synonym: "Urinary bladder wall" EXACT [] synonym: "urinary bladder wall" EXACT [] synonym: "Wall of urinary bladder" EXACT [] xref: FMA:15902 xref: MA:0002493 is_a: UBERON:0000060 ! anatomical wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0001257 name: trigone of urinary bladder alt_id: UBERON:FMA_15910-MA_0002492 def: "." [Wikipedia:Trigone_of_urinary_bladder] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Deep trigone" EXACT [] synonym: "deep trigone" EXACT [] synonym: "Lieutaud's trigone" EXACT [] synonym: "lieutaud's trigone" EXACT [] synonym: "Trigone of bladder" EXACT [] synonym: "trigone of bladder" EXACT [] synonym: "Trigone of urinary bladder" EXACT [] synonym: "Urinary bladder trigone" EXACT [] synonym: "urinary bladder trigone" EXACT [] synonym: "Vesical trigone" EXACT [] synonym: "vesical trigone" EXACT [] xref: FMA:15910 xref: MA:0002492 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0001258 name: neck of urinary bladder alt_id: UBERON:FMA_15912-MA_0002491 def: "." [Wikipedia:Neck_of_urinary_bladder] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bladder neck" EXACT [] synonym: "bladder neck" EXACT [] synonym: "Neck of bladder" EXACT [] synonym: "neck of bladder" EXACT [] synonym: "Neck of urinary bladder" EXACT [] synonym: "Urinary bladder neck" EXACT [] synonym: "urinary bladder neck" EXACT [] synonym: "Vesical neck" EXACT [] synonym: "vesical neck" EXACT [] xref: FMA:15912 xref: MA:0002491 xref: ncithesaurus:Bladder_Neck is_a: UBERON:0001560 ! neck of organ relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0001259 name: mucosa of urinary bladder alt_id: UBERON:FMA_15928-MA_0001692 comment: This class was created automatically from a combination of ontologies synonym: "Bladder mucosa" EXACT [] synonym: "bladder mucosa" EXACT [] synonym: "Mucosa of urinary bladder" EXACT [] synonym: "Mucous membrane of bladder" EXACT [] synonym: "mucous membrane of bladder" EXACT [] synonym: "Mucous membrane of urinary bladder" EXACT [] synonym: "mucous membrane of urinary bladder" EXACT [] synonym: "Urinary bladder mucosa" EXACT [] synonym: "urinary bladder mucosa" EXACT [] xref: EFO:0000293 xref: FMA:15928 xref: MA:0001692 xref: ncithesaurus:Bladder_Mucosa is_a: UBERON:0000064 ! organ part is_a: UBERON:0000344 ! implied link automatically realized ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0001256 ! wall of urinary bladder [Term] id: UBERON:0001260 name: serosa of urinary bladder alt_id: UBERON:FMA_15932-MA_0001696 comment: TODO - check serosa/peritoneum synonym: "Bladder serosa" EXACT [] synonym: "bladder serosa" EXACT [] synonym: "Serosa of bladder" EXACT [] synonym: "serosa of bladder" EXACT [] synonym: "Serosa of urinary bladder" EXACT [] synonym: "Serous coat of bladder" EXACT [] synonym: "serous coat of bladder" EXACT [] synonym: "Serous coat of urinary bladder" EXACT [] synonym: "serous coat of urinary bladder" EXACT [] synonym: "Urinary bladder serosa" EXACT [] synonym: "urinary bladder serosa" EXACT [] synonym: "Visceral peritoneum of urinary bladder" EXACT [] synonym: "visceral peritoneum of urinary bladder" EXACT [] xref: FMA:15932 xref: MA:0001696 is_a: UBERON:0000042 ! serous membrane intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0001261 name: lamina propria of urinary bladder alt_id: UBERON:FMA_15935-MA_0001695 comment: This class was created automatically from a combination of ontologies synonym: "Lamina propria of urinary bladder" EXACT [] synonym: "urinary bladder lamina propria" EXACT [] xref: FMA:15935 xref: MA:0001695 is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0003594 ! implied link automatically realized ! pelvis connective tissue intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0001255 ! urinary bladder relationship: part_of UBERON:0001259 ! mucosa of urinary bladder [Term] id: UBERON:0001262 name: wall of intestine alt_id: UBERON:FMA_15949-MA_0002693 comment: This class was created automatically from a combination of ontologies synonym: "Intestinal wall" EXACT [] synonym: "intestinal wall" EXACT [] synonym: "intestine wall" EXACT [] synonym: "Wall of intestine" EXACT [] xref: BTO:0000647 xref: FMA:15949 xref: MA:0002693 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0003697 ! implied link automatically realized ! abdominal wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0000160 ! intestine [Term] id: UBERON:0001263 name: pancreatic acinus alt_id: UBERON:FMA_16011-MA_0002417 comment: This class was created automatically from a combination of ontologies synonym: "Acinus pancreaticus" EXACT [] synonym: "acinus pancreaticus" EXACT [] synonym: "Pancreatic acinus" EXACT [] xref: FMA:16011 xref: MA:0002417 xref: ncithesaurus:Pancreatic_Acinus is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0001264 name: pancreas alt_id: UBERON:FMA_16017-FMA_16018-FMA_7198-MA_0000120-MA_0001582-MA_0002415-MIAA_0000075-XAO_0000136-XAO_0000137-ZFA_0000140-ZFA_0001249-ZFA_0001260 def: "Lobular organ the parenchyma of which consists of glandular acini which communicate via a duct system with the duodenum. Examples: There is only one pancreas. // Internal gland organ with distinct tissues with different endocrine and exocrine functions. Its rudiment has three parts, one dorsal and two ventral primordia. The ventral can be first detected at NF stage 37/38. The dorsal is clearly segregated from the duodenal wall by NF stage 39. At NF stage 40 the right and left primordia have fused just above the gasto-duodenal vein. At NF stage 42 blood vessels penetrate into the crevices between the pancreatic acini making them more conspicuous. // Pancreatic tissue composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion." [ISBN:0815318960, ISBN:0881679860, Wikipedia:Pancreas, ZFA:0001249, ZFIN:curator] subset: uberon_slim synonym: "Pancreas" EXACT [] xref: BTO:0000988 xref: EFO:0000855 xref: EHDAA:6893 xref: FMA:7198 xref: GAID:334 xref: HOG:0000050 xref: MA:0000120 xref: MAT:0000075 xref: MIAA:0000075 xref: ncithesaurus:Pancreas xref: OpenCyc:Mx4rvVimZZwpEbGdrcN5Y29ycA xref: TAO:0000140 xref: XAO:0000136 xref: ZFA:0000140 is_a: UBERON:0002075 ! viscus relationship: develops_from UBERON:0000925 ! endoderm relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0001265 name: trabecula of spleen alt_id: UBERON:FMA_16027-MA_0000758 comment: This class was created automatically from a combination of ontologies synonym: "spleen trabeculum" EXACT [] synonym: "Splenic trabecula" EXACT [] synonym: "splenic trabecula" EXACT [] synonym: "Trabecula of spleen" EXACT [] xref: FMA:16027 xref: MA:0000758 xref: ncithesaurus:Splenic_Trabecula is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0001266 name: splenic cord alt_id: UBERON:FMA_16031-MA_0002671 comment: This class was created automatically from a combination of ontologies synonym: "Cord of Bilroth" EXACT [] synonym: "cord of bilroth" EXACT [] synonym: "Splenic cord" EXACT [] xref: FMA:16031 xref: MA:0002671 xref: ncithesaurus:Splenic_Cord is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001250 ! red pulp of spleen [Term] id: UBERON:0001267 name: femoral nerve alt_id: UBERON:FMA_16486-MA_0001167 def: "." [Wikipedia:Femoral_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anterior crural nerve" EXACT [] synonym: "anterior crural nerve" EXACT [] synonym: "Femoral nerve" EXACT [] xref: EHDAA:5655 xref: FMA:16486 xref: GAID:850 xref: HOG:0001411 xref: MA:0001167 xref: ncithesaurus:Femoral_Nerve is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001268 name: peritoneal fluid alt_id: UBERON:FMA_16515-MA_0002531 def: "Transudate contained in the peritoneal cavity." [Wikipedia:Peritoneal_fluid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Peritoneal fluid" EXACT [] xref: BTO:0001031 xref: FMA:16515 xref: MA:0002531 is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0001179 ! peritoneal cavity [Term] id: UBERON:0001269 name: acetabular part of hip bone alt_id: UBERON:FMA_16579-MA_0001335 def: "." [Wikipedia:Acetabulum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Acetabular part of hip bone" EXACT [] synonym: "acetabulum" EXACT [] xref: AAO:0000770 xref: FMA:16579 xref: GAID:206 xref: MA:0001335 xref: ncithesaurus:Acetabulum is_a: UBERON:0001271 ! pelvic girdle relationship: part_of UBERON:0001486 ! hip joint [Term] id: UBERON:0001270 name: bony pelvis alt_id: UBERON:FMA_16580-MA_0000532 comment: This class was created automatically from a combination of ontologies synonym: "Bony pelvis" EXACT [] synonym: "pelvis bone" EXACT [] xref: FMA:16580 xref: MA:0000532 is_obsolete: true [Term] id: UBERON:0001271 name: pelvic girdle alt_id: UBERON:FMA_16581-MA_0000293-MIAA_0000182-XAO_0003064-ZFA_0000565 def: "Subdivision of free lower limb, which is the proximal segment of a lower limb and links the free lower limb to the trunk; it is demarcated by the plane of the surface of the acetabular fossa from the free lower limb; together with the free lower limb, it constitutes the lower limb. Examples: There are only two instances, right and left pelvic girdles. // Arched skeletal structure that supports the hind limbs, begins to develop at NF stage 50, and is ossified by NF stage 66." [ISBN:0471209627, NLM:pelvic+girdle, Wikipedia:Pelvic_girdle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "girdle - pelvic" EXACT [] synonym: "Pelvic girdle" EXACT [] synonym: "pelvic girdle bone" EXACT [] xref: AAO:0000426 xref: EFO:0000947 xref: EHDAA:7149 xref: EHDAA:8324 xref: FMA:16581 xref: HOG:0000305 xref: MA:0000293 xref: MAT:0000182 xref: MIAA:0000182 xref: ncithesaurus:Pelvic_Girdle xref: TAO:0000565 xref: XAO:0003064 xref: ZFA:0000565 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0001272 name: hip bone alt_id: UBERON:FMA_16585-ZFA_0000623 def: "." [Wikipedia:Hip_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "basipterygium" EXACT [] synonym: "Bone of pelvic girdle" EXACT [] synonym: "bone of pelvic girdle" EXACT [] synonym: "Coxal bone" EXACT [] synonym: "coxal bone" EXACT [] synonym: "Hip bone" EXACT [] synonym: "Innominate bone" EXACT [] synonym: "innominate bone" EXACT [] synonym: "Pelvic bone" EXACT [] synonym: "pelvic bone" RELATED [] xref: FMA:16585 xref: GAID:205 xref: MA:0000655 xref: ncithesaurus:Pelvic_Bone xref: OpenCyc:Mx4rvVjcrZwpEbGdrcN5Y29ycA xref: TAO:0000623 xref: ZFA:0000623 is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0001464 ! hip relationship: part_of UBERON:0001464 ! hip [Term] id: UBERON:0001273 name: ilium alt_id: UBERON:FMA_16589-MA_0001336 def: "." [Wikipedia:Ilium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ilium" EXACT [] synonym: "Os iliacum" EXACT [] synonym: "os iliacum" EXACT [] synonym: "Os ilii" EXACT [] synonym: "os ilii" EXACT [] xref: AAO:0000772 xref: FMA:16589 xref: GAID:207 xref: galen:Ilium xref: MA:0001336 xref: ncithesaurus:Ilium is_a: UBERON:0001271 ! pelvic girdle relationship: part_of UBERON:0001272 ! hip bone [Term] id: UBERON:0001274 name: ischium alt_id: UBERON:FMA_16592-MA_0001337 def: "." [Wikipedia:Ischium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ischium" EXACT [] xref: AAO:0000860 xref: FMA:16592 xref: GAID:208 xref: galen:Ischium xref: MA:0001337 xref: ncithesaurus:Ischium is_a: UBERON:0001271 ! pelvic girdle [Term] id: UBERON:0001275 name: pubis alt_id: UBERON:FMA_16595-MA_0001338 def: "." [Wikipedia:Pubis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pubis" EXACT [] xref: AAO:0000861 xref: FMA:16595 xref: MA:0001338 is_a: UBERON:0001271 ! pelvic girdle relationship: part_of UBERON:0001272 ! hip bone [Term] id: UBERON:0001276 name: epithelium of stomach alt_id: UBERON:FMA_17091-MA_0001610 comment: This class was created automatically from a combination of ontologies synonym: "Epithelium of stomach" EXACT [] synonym: "Gastric epithelium" EXACT [] synonym: "gastric epithelium" RELATED [] synonym: "stomach epithelium" EXACT [] xref: BTO:0000500 xref: FMA:17091 xref: HOG:0001433 xref: MA:0001610 is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000945 ! stomach relationship: part_of UBERON:0001199 ! mucosa of stomach [Term] id: UBERON:0001277 name: intestinal epithelium alt_id: UBERON:FMA_17229-ZFA_0005124 def: "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. Crosnier et al. 2005" [Wikipedia:Intestinal_epithelium, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Intestinal epithelium" EXACT [] synonym: "intestine epithelium" RELATED [] xref: BTO:0000781 xref: FMA:17229 xref: MA:0001536 xref: ncithesaurus:Intestinal_Epithelium xref: TAO:0005124 xref: ZFA:0005124 is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000160 ! intestine relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001278 name: epithelium of large intestine alt_id: UBERON:FMA_17301-MA_0001545 comment: This class was created automatically from a combination of ontologies synonym: "Epithelium of large intestine" EXACT [] synonym: "Large intestinal epithelium" EXACT [] synonym: "large intestinal epithelium" EXACT [] synonym: "large intestine epithelium" EXACT [] xref: FMA:17301 xref: MA:0001545 is_a: UBERON:0001277 ! intestinal epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001207 ! mucosa of large intestine [Term] id: UBERON:0001279 name: portal triad alt_id: UBERON:FMA_17523-MA_0002499 def: "." [Wikipedia:Portal_triad] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Portal triad" EXACT [] synonym: "Trias hepatica" EXACT [] synonym: "trias hepatica" EXACT [] xref: FMA:17523 xref: MA:0002499 xref: ncithesaurus:Portal_Triad is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001172 ! hepatic acinus [Term] id: UBERON:0001280 name: liver parenchyma alt_id: UBERON:0003223 alt_id: UBERON:FMA_17540-MA_0000366 comment: This class was created automatically from a combination of ontologies synonym: "Hepatic parenchyma" EXACT [] synonym: "hepatic parenchyma" RELATED [] synonym: "Liver parenchyma" EXACT [] synonym: "Parenchyma of liver" EXACT [] synonym: "parenchyma of liver" EXACT [] xref: EHDAA:2201 xref: FMA:17540 xref: HOG:0000539 xref: MA:0000366 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0002107 ! liver relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:0001281 name: hepatic sinusoid alt_id: UBERON:0003275 alt_id: UBERON:FMA_17543-MA_0000367-ZFA_0005091 def: "Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [Wikipedia:Hepatic_sinusoid, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hepatic sinusoid" EXACT [] synonym: "hepatic sinusoids" RELATED [] synonym: "liver sinusoid" EXACT [] synonym: "Vas capillare sinusoideum" EXACT [] synonym: "vas capillare sinusoideum" EXACT [] xref: EHDAA:2199 xref: EHDAA:3997 xref: EHDAA:4003 xref: EHDAA:6992 xref: EHDAA:8084 xref: FMA:17543 xref: HOG:0000708 xref: MA:0000367 xref: ncithesaurus:Hepatic_Sinusoid xref: TAO:0005091 xref: ZFA:0005091 is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel is_a: UBERON:0003909 ! sinusoid intersection_of: UBERON:0003909 ! sinusoid intersection_of: part_of UBERON:0002107 ! liver relationship: part_of UBERON:0002107 ! liver [Term] id: UBERON:0001282 name: intralobular bile duct alt_id: UBERON:FMA_17545-MA_0002669 def: "." [Wikipedia:Cholangiole] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "canal of hering" RELATED [] synonym: "Canal of Herring" EXACT [] synonym: "canal of herring" RELATED [] synonym: "Cholangiole" EXACT [] synonym: "cholangiole" EXACT [] synonym: "Intralobular bile duct" EXACT [] xref: FMA:17545 xref: MA:0002669 is_a: UBERON:0002394 ! bile duct relationship: part_of UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0001283 name: bile canaliculus alt_id: UBERON:FMA_17547-MA_0002495 def: "." [Wikipedia:Bile_canaliculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bile canaliculus" EXACT [] xref: BTO:0002841 xref: FMA:17547 xref: MA:0002495 xref: ncithesaurus:Bile_Canaliculus xref: ZFA:0005163 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001113 ! lobe of liver [Term] id: UBERON:0001284 name: renal column alt_id: UBERON:FMA_17633-MA_0001651 def: "." [Wikipedia:Renal_column] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Renal column" EXACT [] synonym: "Renal column of Bertini" EXACT [] synonym: "renal column of bertini" EXACT [] xref: FMA:17633 xref: MA:0001651 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002189 ! outer cortex of kidney [Term] id: UBERON:0001285 name: nephron alt_id: UBERON:FMA_17640-MA_0000375-XAO_0000145 def: "The basic functional unit of the kidney. its chief function is to regulate the concentration of water and soluble substances like sodium salts by filtering the blood, reabsorbing what is needed and excreting the rest as urine. A nephron eliminates wastes from the body, regulates blood volume and blood pressure, controls levels of electrolytes and metabolites, and regulates blood pH. Its functions are vital to life and are regulated by the endocrine system by hormones such as antidiuretic hormone, aldosterone, and parathyroid hormone.[WP]" [PMID:9268568, Wikipedia:Nephron] subset: uberon_slim synonym: "Nephron" EXACT [] xref: BTO:0000924 xref: FMA:17640 xref: GAID:428 xref: MA:0000375 xref: ncithesaurus:Nephron xref: XAO:0000145 xref: ZFA:0005282 is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0003220 ! metanephric blastema relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0001286 name: bowman's space alt_id: UBERON:FMA_17676-MA_0001664 def: "." [Wikipedia:Bowman's_space] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bowman's space" EXACT [] synonym: "Urinary space" EXACT [] synonym: "urinary space" EXACT [] xref: FMA:17676 xref: MA:0001664 xref: ncithesaurus:Urinary_Space xref: ZFA:0005283 xref: ZFA:0005312 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001230 ! glomerular capsule [Term] id: UBERON:0001287 name: proximal convoluted tubule alt_id: UBERON:FMA_17693-MA_0001669-ZFA_0001620 def: "Most anterior portion of the pronephric duct (or tubule as described by Wingert et al, 2007). Wingert, 2007." [Wikipedia:Proximal_convoluted_tubule, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "first convoluted tubule" RELATED [] synonym: "PCT" RELATED [] synonym: "Proximal convoluted renal tubule" EXACT [] synonym: "proximal convoluted renal tubule" EXACT [] synonym: "Proximal convoluted tubule" EXACT [] synonym: "Tubulus contortus proximalis" EXACT [] synonym: "tubulus contortus proximalis" EXACT [] xref: FMA:17693 xref: MA:0001669 xref: ZFA:0001620 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001225 ! cortex of kidney relationship: part_of UBERON:0001231 ! renal tubule [Term] id: UBERON:0001288 name: loop of Henle alt_id: UBERON:FMA_17698-MA_0001675 def: "Portion of the nephron that leads from the proximal convoluted tubule to the distal convoluted tubule. The loop has a hairpin bend in the renal medulla. The main function of this structure is to create a concentration gradient in the medulla of the kidney. By means of a countercurrent multiplier system, which utilizes sodium pumps, it creates an area of high sodium concentration deep in the medulla, near the collecting duct. Water present in the filtrate in the collecting duct flows through aquaporin channels out of the collecting duct, moving passively down its concentration gradient. This process reabsorbs water and creates a concentrated urine for excretion[WP]." [Wikipedia:Loop_of_henle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Henle loop" EXACT [] synonym: "henle's loop" EXACT [] synonym: "Loop of Henle" EXACT [] xref: FMA:17698 xref: GAID:437 xref: HOG:0001270 xref: MA:0001675 xref: ncithesaurus:Loop_of_Henle is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001231 ! renal tubule [Term] id: UBERON:0001289 name: descending limb of loop of Henle alt_id: UBERON:FMA_17705-MA_0001679 def: "Portion of the renal tubule constituting the first part of the loop of Henle[WP]." [Wikipedia:Descending_limb_of_loop_of_henle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Descending limb of Henle's loop" EXACT [] synonym: "descending limb of henle's loop" EXACT [] synonym: "Descending limb of loop of Henle" EXACT [] synonym: "loop of henle descending limb" EXACT [] xref: FMA:17705 xref: MA:0001679 xref: ncithesaurus:Descending_Limb_of_the_Henle_s_Loop is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001288 ! loop of Henle relationship: part_of UBERON:0003060 ! pronephric duct [Term] id: UBERON:0001290 name: proximal straight tubule alt_id: UBERON:FMA_17716-MA_0002614-ZFA_0001621 def: "Portion of the pronephric duct (or tubule as described by Wingert et al, 2007) which is just posterior to the proximal convoluted tubule. Wingert, 2007." [Wikipedia:Proximal_straight_tubule, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pars recta" RELATED [] synonym: "Proximal straight tubule" EXACT [] synonym: "proximal tubule segment 3" RELATED [] synonym: "Thick descending limb of proximal tubule" EXACT [] synonym: "thick descending limb of proximal tubule" EXACT [] synonym: "Tubulus rectus proximalis" EXACT [] synonym: "tubulus rectus proximalis" EXACT [] xref: FMA:17716 xref: MA:0002614 xref: ZFA:0001621 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001225 ! cortex of kidney relationship: part_of UBERON:0001289 ! descending limb of loop of Henle [Term] id: UBERON:0001291 name: ascending limb of loop of Henle alt_id: UBERON:FMA_17717-MA_0001676 def: "a segment of the nephron in the kidney. It can be divided into two parts: that in the renal medulla, and that in the renal cortex[Wikipedia:Thick_ascending_limb_of_loop_of_Henle]. sub-portion of the loop of Henle in the nephron of the kidney. As filtrate passes back up it, the concentration of the surrounding medulla decreases. The thin ascending limb is not permeable to water, but it is permeable to ions[Wikipedia:Thin_ascending_limb_of_loop_of_Henle]." [Wikipedia:Ascending_limb_of_loop_of_Henle] comment: TODO: thick/thin check subset: uberon_slim synonym: "Ascending limb of Henle's loop" EXACT [] synonym: "ascending limb of henle's loop" EXACT [] synonym: "Ascending limb of loop of Henle" EXACT [] synonym: "distal straight tubule" NARROW [] synonym: "loop of henle ascending limb" EXACT [] synonym: "Thick ascending limb of Henle's loop" NARROW [] xref: FMA:17717 xref: MA:0001676 xref: ncithesaurus:Ascending_Limb_of_the_Henle_s_Loop is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001288 ! loop of Henle [Term] id: UBERON:0001292 name: distal convoluted tubule alt_id: UBERON:FMA_17721-MA_0001666 def: "a portion of kidney nephron between the loop of Henle and the collecting duct system." [Wikipedia:Distal_convoluted_tubule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Distal convoluted renal tubule" EXACT [] synonym: "distal convoluted renal tubule" EXACT [] synonym: "Distal convoluted tubule" EXACT [] synonym: "second convoluted tubule" RELATED [] synonym: "Tubulus contortus distalis" EXACT [] synonym: "tubulus contortus distalis" EXACT [] xref: FMA:17721 xref: MA:0001666 xref: ncithesaurus:Distal_Convoluted_Tubule is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0003220 ! metanephric blastema relationship: part_of UBERON:0001225 ! cortex of kidney relationship: part_of UBERON:0001231 ! renal tubule [Term] id: UBERON:0001293 name: outer medulla of kidney alt_id: UBERON:FMA_17733-MA_0001653 comment: This class was created automatically from a combination of ontologies synonym: "Outer medulla of kidney" EXACT [] synonym: "Outer renal medulla" EXACT [] synonym: "outer renal medulla" EXACT [] synonym: "Outer zone of medulla of kidney" EXACT [] synonym: "outer zone of medulla of kidney" EXACT [] synonym: "Outer zone of renal medulla" EXACT [] synonym: "outer zone of renal medulla" EXACT [] xref: FMA:17733 xref: MA:0001653 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0001294 name: inner medulla of kidney alt_id: UBERON:FMA_17734-MA_0001652 comment: This class was created automatically from a combination of ontologies synonym: "Inner medulla of kidney" EXACT [] synonym: "Inner renal medulla" EXACT [] synonym: "inner renal medulla" EXACT [] synonym: "Inner zone of medulla of kidney" EXACT [] synonym: "inner zone of medulla of kidney" EXACT [] synonym: "Inner zone of renal medulla" EXACT [] synonym: "inner zone of renal medulla" EXACT [] xref: FMA:17734 xref: MA:0001652 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0001295 name: endometrium alt_id: UBERON:FMA_17742-MA_0000390-MIAA_0000319 def: "inner membrane of the mammalian uterus.." [Wikipedia:Endometrium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Endometrium" EXACT [] synonym: "Tunica mucosa (Endometrium)" EXACT [] synonym: "tunica mucosa (endometrium)" EXACT [] xref: EFO:0000980 xref: FMA:17742 xref: GAID:377 xref: HOG:0001285 xref: MA:0000390 xref: MAT:0000319 xref: MIAA:0000319 xref: ncithesaurus:Endometrium is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0001296 name: myometrium alt_id: UBERON:FMA_17743-MA_0000391 def: "middle layer of the uterine wall consisting of smooth muscle cells and supporting stromal and vascular tissue." [http://en.wikipedia.org/wiki/Myometrium, Wikipedia:Myometrium] comment: The inner layer of the uterine wall is the endometrium or uterine lining, and the outer layer the serosa or perimetrium. The myometrium stretches (the smooth muscle cells expand in both size and number[1]) during pregnancy to allow for the harboring of the pregnancy, and contracts in a coordinated fashion during the process of labor. After delivery the myometrium contracts to expel the placenta and reduce blood loss. subset: uberon_slim synonym: "Myometrium" EXACT [] synonym: "Tunica muscularis (Myometrium)" EXACT [] synonym: "tunica muscularis (myometrium)" EXACT [] synonym: "uterine smooth muscle" RELATED [] xref: BTO:0000907 xref: EFO:0001970 xref: FMA:17743 xref: GAID:171 xref: HOG:0001281 xref: MA:0000391 xref: MeSH:D009215 xref: ncithesaurus:Myometrium is_a: UBERON:0001135 ! smooth muscle tissue relationship: part_of UBERON:0000995 ! uterus relationship: surrounded_by UBERON:0001297 ! serosa of uterus relationship: surrounds UBERON:0001295 ! endometrium [Term] id: UBERON:0001297 name: serosa of uterus alt_id: UBERON:FMA_17744-MA_0001729 def: "Outer serosa layer of the uterus." [Wikipedia:Perimetrium] comment: TODO - check for parallel structure with peritoneum synonym: "perimetrium" RELATED [http://en.wikipedia.org/wiki/Perimetrium] synonym: "Serosa of uterus" EXACT [] synonym: "Serous coat of uterus" EXACT [] synonym: "serous coat of uterus" EXACT [] synonym: "Tunica serosa (Perimetrium)" EXACT [] synonym: "tunica serosa (perimetrium)" EXACT [] synonym: "Uterine serosa" EXACT [] synonym: "uterine serosa" EXACT [] synonym: "uterus serosa" EXACT [] synonym: "Visceral peritoneum of uterus" EXACT [] synonym: "visceral peritoneum of uterus" EXACT [] xref: FMA:17744 xref: MA:0001729 is_a: UBERON:0000042 ! serous membrane intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0000995 ! uterus relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0001298 name: psoas major alt_id: UBERON:FMA_18060-MA_0002358 def: "." [Wikipedia:Psoas_major] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Psoas major" EXACT [] synonym: "Psoas major muscle" EXACT [] synonym: "psoas major muscle" EXACT [] xref: BTO:0001877 xref: FMA:18060 xref: MA:0002358 xref: ncithesaurus:Psoas_Major is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001299 name: glans penis alt_id: UBERON:FMA_18247-MA_0002726 def: "." [Wikipedia:Glans_penis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Glans penis" EXACT [] xref: BTO:0003118 xref: FMA:18247 xref: GAID:0000012 xref: HOG:0001475 xref: MA:0002726 xref: ncithesaurus:Glans_Penis xref: OpenCyc:Mx4rvdCpE5wpEbGdrcN5Y29ycA is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000989 ! penis [Term] id: UBERON:0001300 name: scrotum alt_id: UBERON:FMA_18252-MA_0000409 def: "." [Wikipedia:Scrotum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Scrotum" EXACT [] xref: BTO:0003098 xref: FMA:18252 xref: GAID:393 xref: MA:0000409 xref: ncithesaurus:Scrotum is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001301 name: epididymis alt_id: UBERON:FMA_18255-MA_0000397-MIAA_0000130 def: "A narrow, tightly-coiled tube connecting the efferent ducts from the rear of each testicle to its vas deferens." [Wikipedia:Epididymis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Epididymis" EXACT [] synonym: "epididymus" EXACT [] xref: BTO:0000408 xref: EFO:0000982 xref: FMA:18255 xref: GAID:397 xref: galen:Epididymis xref: HOG:0001265 xref: MA:0000397 xref: MAT:0000130 xref: MIAA:0000130 xref: ncithesaurus:Epididymis is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0000473 ! testis [Term] id: UBERON:0001302 name: right uterine tube alt_id: UBERON:FMA_18483-MA_0001717 comment: This class was created automatically from a combination of ontologies synonym: "Right fallopian tube" EXACT [] synonym: "right fallopian tube" EXACT [] synonym: "Right oviduct" EXACT [] synonym: "right oviduct" EXACT [] synonym: "Right uterine tube" EXACT [] xref: FMA:18483 xref: MA:0001717 xref: ncithesaurus:Right_Fallopian_Tube is_a: UBERON:0003889 ! fallopian tube [Term] id: UBERON:0001303 name: left uterine tube alt_id: UBERON:FMA_18484-MA_0001716 comment: This class was created automatically from a combination of ontologies synonym: "Left fallopian tube" EXACT [] synonym: "left fallopian tube" EXACT [] synonym: "Left oviduct" EXACT [] synonym: "left oviduct" EXACT [] synonym: "Left uterine tube" EXACT [] xref: FMA:18484 xref: MA:0001716 xref: ncithesaurus:Left_Fallopian_Tube is_a: UBERON:0003889 ! fallopian tube [Term] id: UBERON:0001304 name: germinal epithelium of ovary alt_id: UBERON:FMA_18629-MA_0001711 comment: This class was created automatically from a combination of ontologies synonym: "Epithelium superficiale (Ovarium)" EXACT [] synonym: "epithelium superficiale (ovarium)" EXACT [] synonym: "Germinal epithelium of ovary" EXACT [] synonym: "ovary germinal epithelium" EXACT [] xref: FMA:18629 xref: HOG:0000630 xref: MA:0001711 is_a: UBERON:0000484 ! simple cuboidal epithelium relationship: part_of UBERON:0001307 ! capsule of ovary [Term] id: UBERON:0001305 name: follicle of ovary alt_id: UBERON:FMA_18640-MA_0001707-ZFA_0001110 def: "Oocyte development of zebrafish has been divided into five stages based on morphological criteria and on physiological and biochemical events. Stage I follicles (less than 140 microns) are primary growth stage, stage II follicles (140-340 microns) are cortical alveolus stage, stage III (340-690 microns) are vitellogenesis, stage IV (690-730 microns) are oocyte maturation, and stage V follicles are matured egg.Selman et al, 1993." [Wikipedia:Ovarian_follicle, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "egg follicle" RELATED [] synonym: "Follicle of ovary" EXACT [] synonym: "Follicle of ovary viewed macroscopically" EXACT [] synonym: "follicle of ovary viewed macroscopically" EXACT [] synonym: "Ovarian follicle" EXACT [] synonym: "ovarian follicle" EXACT [] synonym: "Ovary follicle" EXACT [] synonym: "ovary follicle" EXACT [] xref: BTO:0000475 xref: FMA:18640 xref: GAID:371 xref: HOG:0001536 xref: MA:0001707 xref: MAT:0000449 xref: ncithesaurus:Ovarian_Follicle xref: TAO:0001110 xref: ZFA:0001110 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000992 ! ovary [Term] id: UBERON:0001306 name: cumulus oophorus alt_id: UBERON:FMA_18659-MA_0002414 def: "." [Wikipedia:Cumulus_oophorus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cumulus oophorus" EXACT [] synonym: "Cumulus ovaricus" EXACT [] synonym: "cumulus ovaricus" EXACT [] xref: FMA:18659 xref: MA:0002414 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001305 ! follicle of ovary [Term] id: UBERON:0001307 name: capsule of ovary alt_id: UBERON:FMA_18662-MA_0001706 comment: This class was created automatically from a combination of ontologies synonym: "Capsule of ovary" EXACT [] synonym: "Ovarian capsule" EXACT [] synonym: "ovarian capsule" EXACT [] synonym: "Ovary capsule" EXACT [] synonym: "ovary capsule" EXACT [] xref: FMA:18662 xref: MA:0001706 xref: ncithesaurus:Ovarian_Capsule is_a: UBERON:0003893 ! capsule intersection_of: UBERON:0003893 ! capsule intersection_of: surrounds UBERON:0000992 ! ovary relationship: surrounds UBERON:0000992 ! ovary [Term] id: UBERON:0001308 name: external iliac artery alt_id: UBERON:FMA_18805-MA_0001973 def: "." [Wikipedia:External_iliac_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "External iliac artery" EXACT [] xref: FMA:18805 xref: galen:ExternalIliacArtery xref: MA:0001973 xref: ncithesaurus:External_Iliac_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel relationship: part_of UBERON:0001191 ! common iliac artery [Term] id: UBERON:0001309 name: internal iliac artery alt_id: UBERON:FMA_18808-MA_0001974 def: "." [Wikipedia:Internal_iliac_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Internal iliac artery" EXACT [] xref: FMA:18808 xref: galen:InternalIliacArtery xref: MA:0001974 xref: ncithesaurus:Internal_Iliac_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel relationship: part_of UBERON:0001191 ! common iliac artery [Term] id: UBERON:0001310 name: umbilical artery alt_id: UBERON:FMA_18820-MA_0002072 def: "." [Wikipedia:Umbilical_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Umbilical artery" EXACT [] xref: BTO:0000841 xref: EHDAA:1026 xref: EHDAA:410 xref: FMA:18820 xref: GAID:516 xref: MA:0002072 xref: ncithesaurus:Umbilical_Artery xref: OpenCyc:Mx4rCWdhMGWbEd2AAABQjYGu0g is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001311 name: inferior vesical artery alt_id: UBERON:FMA_18823-MA_0002079 def: "." [Wikipedia:Inferior_vesical_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Arteria vesicali inferior" EXACT [] synonym: "arteria vesicali inferior" EXACT [] synonym: "Inferior vesical artery" EXACT [] xref: FMA:18823 xref: MA:0002079 xref: ncithesaurus:Inferior_Vesical_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001312 name: superior vesical artery alt_id: UBERON:FMA_18839-MA_0002080 def: "." [Wikipedia:Superior_vesical_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Arteria vesicalis superior" EXACT [] synonym: "arteria vesicalis superior" EXACT [] synonym: "Superior vesical artery" EXACT [] xref: FMA:18839 xref: MA:0002080 xref: ncithesaurus:Superior_Vesical_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001313 name: iliolumbar artery alt_id: UBERON:FMA_18845-MA_0001976 def: "." [Wikipedia:Iliolumbar_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ilio-lumbar artery" EXACT [] synonym: "Iliolumbar artery" EXACT [] xref: FMA:18845 xref: MA:0001976 xref: ncithesaurus:Iliolumbar_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001314 name: obturator artery alt_id: UBERON:FMA_18865-MA_0002008 def: "." [Wikipedia:Obturator_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Obturator artery" EXACT [] xref: FMA:18865 xref: MA:0002008 xref: ncithesaurus:Obturator_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001315 name: superior gluteal artery alt_id: UBERON:FMA_18868-MA_0002054 def: "." [Wikipedia:Superior_gluteal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Arteria glutealis superior" EXACT [] synonym: "arteria glutealis superior" EXACT [] synonym: "Superior gluteal artery" EXACT [] xref: FMA:18868 xref: MA:0002054 xref: ncithesaurus:Gluteal_Artery is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001015 ! muscle system [Term] id: UBERON:0001316 name: external iliac vein alt_id: UBERON:FMA_18883-MA_0002144 def: "." [Wikipedia:External_iliac_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "External iliac vein" EXACT [] xref: FMA:18883 xref: galen:ExternalIliacVein xref: MA:0002144 xref: ncithesaurus:External_Iliac_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001317 name: internal iliac vein alt_id: UBERON:FMA_18884-MA_0002145 def: "." [Wikipedia:Internal_iliac_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Internal iliac vein" EXACT [] xref: FMA:18884 xref: galen:InternalIliacVein xref: HOG:0000749 xref: MA:0002145 xref: ncithesaurus:Internal_Iliac_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001318 name: inferior vesical vein alt_id: UBERON:FMA_18890-MA_0002264 comment: This class was created automatically from a combination of ontologies synonym: "Inferior vesical vein" EXACT [] xref: FMA:18890 xref: MA:0002264 is_a: UBERON:0002460 ! vesical vein [Term] id: UBERON:0001319 name: vaginal vein alt_id: UBERON:FMA_18899-MA_0002251 def: "." [Wikipedia:Vaginal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Vaginal vein" EXACT [] xref: FMA:18899 xref: MA:0002251 is_a: UBERON:0001638 ! vein intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0001320 name: iliolumbar vein alt_id: UBERON:FMA_18902-MA_0002146 def: "." [Wikipedia:Iliolumbar_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ilio-lumbar vein" EXACT [] synonym: "Iliolumbar vein" EXACT [] xref: FMA:18902 xref: MA:0002146 xref: ncithesaurus:Iliolumbar_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001321 name: obturator vein alt_id: UBERON:FMA_18914-MA_0002183 def: "." [Wikipedia:Obturator_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Obturator vein" EXACT [] xref: FMA:18914 xref: MA:0002183 xref: ncithesaurus:Obturator_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001322 name: sciatic nerve alt_id: UBERON:FMA_19034-MA_0001172 def: "." [Wikipedia:Sciatic_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sciatic nerve" EXACT [] xref: BTO:0001221 xref: EFO:0001417 xref: EHDAA:5659 xref: FMA:19034 xref: GAID:852 xref: HOG:0000894 xref: MA:0001172 xref: ncithesaurus:Sciatic_Nerve xref: NIF_GrossAnatomy:birnlex_1133 xref: OpenCyc:Mx4rv7MlDJwpEbGdrcN5Y29ycA is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve relationship: part_of UBERON:0000978 ! leg relationship: part_of UBERON:0001815 ! lumbosacral nerve plexus [Term] id: UBERON:0001323 name: tibial nerve alt_id: UBERON:FMA_19035-MA_0001173 def: "." [Wikipedia:Tibial_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Medial popliteal nerve" EXACT [] synonym: "medial popliteal nerve" EXACT [] synonym: "Tibial nerve" EXACT [] xref: FMA:19035 xref: GAID:854 xref: MA:0001173 xref: ncithesaurus:Tibial_Nerve is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001324 name: common fibular nerve alt_id: UBERON:FMA_19039-MA_0001169 def: "." [Wikipedia:Common_fibular_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Common fibular nerve" EXACT [] synonym: "Common peroneal nerve" EXACT [] synonym: "common peroneal nerve" EXACT [] synonym: "peroneal nerve" EXACT [] xref: FMA:19039 xref: GAID:853 xref: MA:0001169 xref: ncithesaurus:Peroneal_Nerve is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003431 ! implied link automatically realized ! leg nerve relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001325 name: muscle of pelvis alt_id: UBERON:FMA_19086-MA_0000534 def: "Muscle (organ) which is a part of the pelvis. Examples: levator ani," [] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Muscle of pelvis" EXACT [] synonym: "Pelvic muscle" EXACT [] synonym: "pelvic muscle" EXACT [] synonym: "pelvis muscle" EXACT [] xref: FMA:19086 xref: MA:0000534 is_a: UBERON:0001774 ! muscle of trunk intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002355 ! pelvis relationship: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0001326 name: levator ani alt_id: UBERON:FMA_19087-MA_0002332 def: "." [Wikipedia:Levator_ani] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Levator ani" EXACT [] xref: FMA:19087 xref: MA:0002332 xref: ncithesaurus:Levator_Ani is_a: UBERON:0001325 ! muscle of pelvis relationship: part_of UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0001327 name: coccygeus alt_id: UBERON:FMA_19088-MA_0002277 def: "." [Wikipedia:Coccygeus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Coccygeus" EXACT [] synonym: "Ischiococcygeus" EXACT [] synonym: "ischiococcygeus" EXACT [] xref: FMA:19088 xref: MA:0002277 is_a: UBERON:0001325 ! muscle of pelvis [Term] id: UBERON:0001328 name: lobe of prostate alt_id: UBERON:FMA_19570-MA_0001738 comment: This class was created automatically from a combination of ontologies synonym: "Lobe of prostate" EXACT [] synonym: "Lobe of prostate gland" EXACT [] synonym: "lobe of prostate gland" EXACT [] synonym: "prostate gland lobe" EXACT [] synonym: "Prostatic lobe" EXACT [] synonym: "prostatic lobe" EXACT [] xref: BTO:0000548 xref: FMA:19570 xref: MA:0001738 xref: ncithesaurus:Prostate_Gland_Lobe is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002367 ! prostate [Term] id: UBERON:0001329 name: anterior lobe of prostate alt_id: UBERON:FMA_19574-MA_0002422 comment: This class was created automatically from a combination of ontologies synonym: "Anterior lobe of prostate" EXACT [] synonym: "Anterior lobe of prostate gland" EXACT [] synonym: "anterior lobe of prostate gland" EXACT [] synonym: "Commissure of prostate" EXACT [] synonym: "commissure of prostate" EXACT [] synonym: "Isthmus of prostate" EXACT [] synonym: "isthmus of prostate" EXACT [] synonym: "Isthmus of prostate gland" EXACT [] synonym: "isthmus of prostate gland" EXACT [] synonym: "prostate gland anterior lobe" EXACT [] synonym: "Prostatic isthmus" EXACT [] synonym: "prostatic isthmus" EXACT [] xref: BTO:0003158 xref: FMA:19574 xref: MA:0002422 is_a: UBERON:0001328 ! lobe of prostate [Term] id: UBERON:0001330 name: pampiniform plexus alt_id: UBERON:FMA_19607-MA_0001866 def: "." [Wikipedia:Pampiniform_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pampiniform plexus" EXACT [] synonym: "Pampiniform venous plexus" EXACT [] synonym: "pampiniform venous plexus" EXACT [] synonym: "Plexus of veins of fascia of prostate" EXACT [] synonym: "plexus of veins of fascia of prostate" EXACT [] synonym: "Venous plexus of fascia of prostate" EXACT [] synonym: "venous plexus of fascia of prostate" EXACT [] synonym: "Venous plexus of fascia of prostate gland" EXACT [] synonym: "venous plexus of fascia of prostate gland" EXACT [] xref: FMA:19607 xref: MA:0001866 is_a: UBERON:0001593 ! venous plexus [Term] id: UBERON:0001331 name: skin of penis alt_id: UBERON:FMA_19638-MA_0002727 comment: This class was created automatically from a combination of ontologies synonym: "Penile skin" EXACT [] synonym: "penile skin" EXACT [] synonym: "penis skin" EXACT [] synonym: "Skin of penis" EXACT [] xref: FMA:19638 xref: MA:0002727 is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000989 ! penis relationship: continuous_with UBERON:0001085 ! skin of trunk relationship: part_of UBERON:0000989 ! penis [Term] id: UBERON:0001332 name: prepuce of penis alt_id: UBERON:FMA_19639-MA_0000407 def: "." [Wikipedia:Foreskin] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Foreskin" EXACT [] synonym: "foreskin" EXACT [] synonym: "Penile prepuce" EXACT [] synonym: "penile prepuce" EXACT [] synonym: "prepuce" EXACT [] synonym: "Prepuce of penis" EXACT [] xref: BTO:0001113 xref: EFO:0001664 xref: FMA:19639 xref: MA:0000407 xref: ncithesaurus:Prepuce xref: OpenCyc:Mx4rvVjlTZwpEbGdrcN5Y29ycA is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0001331 ! skin of penis [Term] id: UBERON:0001333 name: male urethra alt_id: UBERON:FMA_19668-MA_0002640 def: "." [Wikipedia:Male_urethra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Male urethra" EXACT [] xref: FMA:19668 xref: MA:0002640 xref: ncithesaurus:Male_Urethra is_a: UBERON:0000057 ! urethra relationship: part_of UBERON:0003101 ! male organism [Term] id: UBERON:0001334 name: female urethra alt_id: UBERON:FMA_19669-MA_0002637 def: "." [Wikipedia:Female_urethra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Female urethra" EXACT [] xref: FMA:19669 xref: MA:0002637 xref: ncithesaurus:Female_Urethra is_a: UBERON:0000057 ! urethra [Term] id: UBERON:0001335 name: prostatic urethra alt_id: UBERON:FMA_19673-MA_0002646 def: "." [Wikipedia:Prostatic_urethra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Prostatic part of urethra" EXACT [] synonym: "prostatic part of urethra" EXACT [] synonym: "Prostatic urethra" EXACT [] xref: BTO:0003163 xref: FMA:19673 xref: MA:0002646 xref: ncithesaurus:Prostatic_Portion_of_the_Male_Urethra is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001333 ! male urethra [Term] id: UBERON:0001336 name: membranous urethra alt_id: UBERON:FMA_19674-MA_0002647 def: "." [Wikipedia:Membranous_urethra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Intermediate part of urethra" EXACT [] synonym: "intermediate part of urethra" EXACT [] synonym: "Intermediate urethra" EXACT [] synonym: "intermediate urethra" EXACT [] synonym: "Membranous part of urethra" EXACT [] synonym: "membranous part of urethra" EXACT [] synonym: "Membranous urethra" EXACT [] synonym: "Pars membranacea (urethrae)" EXACT [] synonym: "pars membranacea (urethrae)" EXACT [] xref: FMA:19674 xref: MA:0002647 xref: ncithesaurus:Membranous_Urethra is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001008 ! urinary system [Term] id: UBERON:0001337 name: spongiose part of urethra alt_id: UBERON:FMA_19675-MA_0002643 def: "." [Wikipedia:Penile_urethra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Penile urethra" EXACT [] synonym: "penile urethra" EXACT [] synonym: "Spongiose part of urethra" EXACT [] synonym: "Spongiose urethra" EXACT [] synonym: "spongiose urethra" EXACT [] synonym: "Spongy urethra (male)" EXACT [] synonym: "spongy urethra (male)" EXACT [] xref: FMA:19675 xref: MA:0002643 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001333 ! male urethra [Term] id: UBERON:0001338 name: urethral gland alt_id: UBERON:FMA_19683-MA_0001688 def: "." [Wikipedia:Urethral_gland] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "urethra gland" EXACT [] synonym: "Urethral gland" EXACT [] xref: FMA:19683 xref: MA:0001688 is_a: UBERON:0002530 ! gland intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000057 ! urethra relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0001339 name: ischiocavernosus alt_id: UBERON:FMA_19730-MA_0002330 def: "." [Wikipedia:Ischiocavernosus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ischiocavernosus" EXACT [] xref: FMA:19730 xref: MA:0002330 xref: ncithesaurus:Ischiocavernosus is_a: UBERON:0002379 ! perineal muscle [Term] id: UBERON:0001340 name: dorsal artery of penis alt_id: UBERON:FMA_19795-MA_0001946 def: "." [Wikipedia:Dorsal_artery_of_penis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Dorsal artery of penis" EXACT [] synonym: "Dorsal penile artery" EXACT [] synonym: "dorsal penile artery" EXACT [] synonym: "dorsal penis artery" EXACT [] xref: FMA:19795 xref: MA:0001946 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0000989 ! penis [Term] id: UBERON:0001341 name: lesser sac alt_id: UBERON:FMA_19800-MA_0000445 def: "." [Wikipedia:Lesser_sac] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lesser sac" EXACT [] synonym: "Omental bursa" EXACT [] synonym: "omental bursa" EXACT [] xref: EHDAA:2335 xref: FMA:19800 xref: HOG:0000458 xref: MA:0000445 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001179 ! peritoneal cavity [Term] id: UBERON:0001342 name: mesovarium alt_id: UBERON:FMA_19815-ZFA_0000333 def: "." [Wikipedia:Mesovarium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Mesovarium" EXACT [] xref: FMA:19815 xref: TAO:0000333 xref: ZFA:0000333 is_a: UBERON:0002095 ! mesentery relationship: part_of UBERON:0000992 ! ovary relationship: part_of UBERON:0002095 ! mesentery [Term] id: UBERON:0001343 name: seminiferous tubule of testis alt_id: UBERON:FMA_19825-XAO_0003088 def: "." [Wikipedia:Seminiferous_tubule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Seminiferous tubule" EXACT [] synonym: "seminiferous tubule" EXACT [] synonym: "Seminiferous tubule of testis" EXACT [] xref: BTO:0001235 xref: EFO:0001404 xref: FMA:19825 xref: GAID:400 xref: HOG:0001363 xref: MA:0000412 xref: MAT:0000503 xref: ncithesaurus:Seminiferous_Tubule xref: XAO:0003088 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0002117 ! testicle [Term] id: UBERON:0001344 name: epithelium of vagina alt_id: UBERON:FMA_19978-MA_0001730 comment: This class was created automatically from a combination of ontologies synonym: "Epithelium of vagina" EXACT [] synonym: "vagina epithelium" EXACT [] synonym: "Vaginal epithelium" EXACT [] synonym: "vaginal epithelium" EXACT [] xref: BTO:0000422 xref: FMA:19978 xref: MA:0001730 xref: ncithesaurus:Vaginal_Epithelium is_a: UBERON:0000486 ! multilaminar epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000996 ! vagina relationship: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0001345 name: fornix alt_id: UBERON:FMA_19985-MA_0002747 def: "This class was obsoleted." [Wikipedia:Fornix] comment: This class was created automatically from a combination of ontologies subset: uberon_slim is_obsolete: true consider: UBERON:0000051 consider: UBERON:0000052 [Term] id: UBERON:0001346 name: hymen of vagina alt_id: UBERON:FMA_20005-MA_0002465 comment: This class was created automatically from a combination of ontologies synonym: "Hymen of vagina" EXACT [] synonym: "Hymen vaginae" EXACT [] synonym: "hymen vaginae" EXACT [] synonym: "Vaginal hymen" EXACT [] synonym: "vaginal hymen" EXACT [] xref: FMA:20005 xref: MA:0002465 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0001347 name: white adipose tissue alt_id: UBERON:FMA_20117-MA_0000058-MIAA_0000199 def: "Adipose tissue, cells of which contain a single large lipid droplet." [Wikipedia:White_adipose_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Adipocytus unigutturalis" EXACT [] synonym: "adipocytus unigutturalis" EXACT [] synonym: "Textus adiposus albus" EXACT [] synonym: "textus adiposus albus" EXACT [] synonym: "Unilocular adipose tissue" EXACT [] synonym: "unilocular adipose tissue" EXACT [] synonym: "White adipose tissue" EXACT [] synonym: "White fat" EXACT [] synonym: "white fat" EXACT [] xref: BTO:0001456 xref: EFO:0000813 xref: FMA:20117 xref: MA:0000058 xref: MAT:0000199 xref: MIAA:0000199 xref: ncithesaurus:White_Adipose_Tissue is_a: UBERON:0001013 ! adipose tissue [Term] id: UBERON:0001348 name: brown adipose tissue alt_id: UBERON:FMA_20118-MA_0000057-MIAA_0000198 def: "Adipose tissue, cells of which contain multiple small lipid droplets." [Wikipedia:Brown_adipose_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Adipocytus multigutturalis" EXACT [] synonym: "adipocytus multigutturalis" EXACT [] synonym: "Brown adipose tissue" EXACT [] synonym: "Brown fat" EXACT [] synonym: "brown fat" EXACT [] synonym: "Multilocular adipose tissue" EXACT [] synonym: "multilocular adipose tissue" EXACT [] synonym: "Textus adiposus fuscus" EXACT [] synonym: "textus adiposus fuscus" EXACT [] xref: BTO:0000156 xref: EFO:0000812 xref: FMA:20118 xref: GAID:921 xref: MA:0000057 xref: MAT:0000198 xref: MIAA:0000198 xref: ncithesaurus:Brown_Adipose_Tissue is_a: UBERON:0001013 ! adipose tissue [Term] id: UBERON:0001349 name: vestibule alt_id: UBERON:FMA_20192-XAO_0000199 def: "Anatomical cavity that connects an organ cavity, organ cavity subdivision or cavity of body part subdivision to the exterior, completely or partially surrounded by organs or organ parts that are lined by epithelium. Examples: preputial cavity, vestibule of vagina." [Wikipedia:Vestibule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Vestibule" EXACT [] xref: FMA:20192 xref: GAID:881 xref: ncithesaurus:Vestibule xref: XAO:0000199 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001839 ! bony labyrinth [Term] id: UBERON:0001350 name: coccyx alt_id: UBERON:FMA_20229-MA_0000696 def: "." [Wikipedia:Coccyx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Coccyx" EXACT [] synonym: "Coccyx [coccygeal vertebrae I-IV]" EXACT [] synonym: "coccyx [coccygeal vertebrae i-iv]" EXACT [] synonym: "tail bone" EXACT [] synonym: "Tailbone" EXACT [] synonym: "tailbone" EXACT [] xref: AAO:0000731 xref: FMA:20229 xref: GAID:239 xref: galen:Coccyx xref: MA:0000696 xref: ncithesaurus:Coccyx xref: OpenCyc:Mx4rv1XqHJwpEbGdrcN5Y29ycA is_a: UBERON:0001474 ! bone relationship: part_of UBERON:0002415 ! tail [Term] id: UBERON:0001351 name: lacrimal sac alt_id: UBERON:FMA_20289-MA_0001298 def: "." [Wikipedia:Lacrimal_sac] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lacrimal sac" EXACT [] xref: FMA:20289 xref: MA:0001298 xref: ncithesaurus:Lacrimal_Sac is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001850 ! lacrimal duct [Term] id: UBERON:0001352 name: external acoustic meatus alt_id: UBERON:FMA_20290-MA_0000260 def: "A tube running from the outer ear to the middle ear. The human ear canal extends from the pinna to the eardrum and is about 26 mm in length and 7 mm in diameter." [Wikipedia:External_acoustic_meatus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Auditory canal" EXACT [] synonym: "auditory canal" EXACT [] synonym: "ear canal" EXACT [Wikipedia:Ear_canal] synonym: "External acoustic meatus" EXACT [] synonym: "External auditory canal" EXACT [] synonym: "external auditory canal" EXACT [] synonym: "External auditory meatus" EXACT [] synonym: "external auditory meatus" RELATED [] synonym: "Lumen of external acoustic tube" EXACT [] synonym: "lumen of external acoustic tube" EXACT [] xref: EHDAA:8975 xref: FMA:20290 xref: FMA:61734 xref: GAID:864 xref: galen:ExternalAuditoryMeatus xref: HOG:0000977 xref: MA:0000260 xref: ncithesaurus:External_Acoustic_Meatus is_a: UBERON:0000464 ! anatomical space relationship: connects UBERON:0001691 ! external ear relationship: connects UBERON:0001756 ! middle ear [Term] id: UBERON:0001353 name: anal part of perineum alt_id: UBERON:FMA_20347-MA_0000329 def: "." [Wikipedia:Anal_triangle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anal part of perineum" EXACT [] synonym: "Anal region" EXACT [] synonym: "anal region" EXACT [] synonym: "Anal triangle" EXACT [] synonym: "anal triangle" EXACT [] xref: EFO:0000847 xref: EHDAA:2931 xref: FMA:20347 xref: HOG:0000395 xref: MA:0000329 xref: MAT:0000042 xref: ncithesaurus:Anal_Region is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001354 name: inferior epigastric artery alt_id: UBERON:FMA_20686-MA_0001978 def: "." [Wikipedia:Inferior_epigastric_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Inferior epigastric artery" EXACT [] xref: FMA:20686 xref: MA:0001978 xref: ncithesaurus:Inferior_Epigastric_Artery xref: OpenCyc:Mx4rdBvQc6gOEdudWQACs5b6Bw is_a: UBERON:0001637 ! artery is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel relationship: part_of UBERON:0001308 ! external iliac artery [Term] id: UBERON:0001355 name: deep femoral artery alt_id: UBERON:FMA_20741-MA_0002027 def: "." [Wikipedia:Deep_femoral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Arteria profunda femoris" EXACT [] synonym: "arteria profunda femoris" EXACT [] synonym: "Deep femoral artery" EXACT [] synonym: "Profunda femoris artery" EXACT [] synonym: "profunda femoris artery" EXACT [] xref: FMA:20741 xref: MA:0002027 xref: ncithesaurus:Deep_Femoral_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001356 name: medial circumflex femoral artery alt_id: UBERON:FMA_20799-MA_0001996 def: "." [Wikipedia:Medial_circumflex_femoral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Medial circumflex femoral artery" EXACT [] synonym: "Medial femoral circumflex artery" EXACT [] synonym: "medial femoral circumflex artery" EXACT [] xref: FMA:20799 xref: MA:0001996 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001357 name: inferior rectal artery alt_id: UBERON:FMA_20824-MA_0001979 def: "." [Wikipedia:Inferior_rectal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Inferior hemorrhoidal artery" EXACT [] synonym: "inferior hemorrhoidal artery" EXACT [] synonym: "Inferior rectal artery" EXACT [] xref: FMA:20824 xref: MA:0001979 xref: ncithesaurus:Inferior_Rectal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001358 name: perineal artery alt_id: UBERON:FMA_20836-MA_0002017 def: "." [Wikipedia:Perineal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Perineal artery" EXACT [] xref: FMA:20836 xref: MA:0002017 xref: ncithesaurus:Perineal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001359 name: cerebrospinal fluid alt_id: UBERON:FMA_20935-MA_0002503 def: "Transudate contained in the subarachnoid space." [Wikipedia:Cerebrospinal_fluid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cerebrospinal fluid" EXACT [] synonym: "CSF" EXACT [] synonym: "csf" EXACT [] xref: BTO:0000237 xref: EFO:0000329 xref: ENVO:02000029 xref: FMA:20935 xref: GAID:1181 xref: HOG:0001278 xref: MA:0002503 xref: MAT:0000499 xref: ncithesaurus:Cerebrospinal_Fluid xref: ZFA:0001626 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001360 name: deep circumflex iliac vein alt_id: UBERON:FMA_21182-MA_0002099 def: "." [Wikipedia:Deep_circumflex_iliac_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Deep circumflex iliac vein" EXACT [] synonym: "deep iliac circumflex vein" EXACT [] synonym: "Vena circumflexa iliaca profunda" EXACT [] synonym: "vena circumflexa iliaca profunda" EXACT [] xref: FMA:21182 xref: MA:0002099 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001361 name: femoral vein alt_id: UBERON:FMA_21185-MA_0002118 def: "." [Wikipedia:Femoral_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Femoral vein" EXACT [] xref: FMA:21185 xref: GAID:533 xref: galen:FemoralVein xref: MA:0002118 xref: ncithesaurus:Femoral_Vein is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001362 name: perineal vein alt_id: UBERON:FMA_21246-MA_0002193 comment: This class was created automatically from a combination of ontologies synonym: "Perineal vein" EXACT [] xref: FMA:21246 xref: MA:0002193 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001363 name: great saphenous vein alt_id: UBERON:FMA_21376-MA_0002216 def: "." [Wikipedia:Great_saphenous_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Great saphenous vein" EXACT [] synonym: "Greater saphenous vein" EXACT [] synonym: "greater saphenous vein" EXACT [] synonym: "Long saphenous vein" EXACT [] synonym: "long saphenous vein" EXACT [] xref: BTO:0003271 xref: FMA:21376 xref: galen:GreaterSaphenousVein xref: galen:GreatSaphenousVein xref: MA:0002216 xref: ncithesaurus:Long_Saphenous_Vein is_a: UBERON:0001638 ! vein relationship: part_of UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001364 name: circumpennate alt_id: UBERON:FMA_21431-ZFA_0000271 synonym: "Circumpennate" EXACT [] synonym: "Radial" EXACT [] synonym: "radial" EXACT [] synonym: "radials" RELATED [] xref: AAO:0000790 xref: FMA:21431 xref: OpenCyc:Mx4rvVjBSZwpEbGdrcN5Y29ycA xref: TAO:0000271 xref: ZFA:0000271 is_obsolete: true [Term] id: UBERON:0001365 name: sacro-iliac joint alt_id: UBERON:FMA_21440-MA_0001506 def: "." [Wikipedia:Sacro-iliac_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Articulatio sacro-iliaca" EXACT [] synonym: "articulatio sacro-iliaca" EXACT [] synonym: "Sacro-iliac joint" EXACT [] synonym: "Sacroiliac joint" EXACT [] synonym: "sacroiliac joint" EXACT [] xref: FMA:21440 xref: GAID:268 xref: MA:0001506 xref: ncithesaurus:Sacroiliac_Joint is_a: UBERON:0002217 ! synovial joint [Term] id: UBERON:0001366 name: parietal peritoneum alt_id: UBERON:FMA_21451-ZFA_0005131 def: "The peritoneum that lines the walls of the peritoneal cavity." [Wikipedia:Parietal_peritoneum, ZFIN:curator] comment: fix coordinated with ZFA subset: uberon_slim synonym: "Parietal peritoneum" EXACT [] xref: FMA:21451 xref: HOG:0001527 xref: TAO:0005131 xref: ZFA:0005131 is_a: UBERON:0000064 ! organ part relationship: bounds UBERON:0001179 ! peritoneal cavity relationship: part_of UBERON:0002358 ! peritoneum relationship: surrounds UBERON:0003684 ! abdominal cavity [Term] id: UBERON:0001367 name: external anal sphincter alt_id: UBERON:FMA_21930-MA_0001531 def: "." [Wikipedia:External_anal_sphincter] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "External anal sphincter" EXACT [] synonym: "External sphincter ani" EXACT [] synonym: "external sphincter ani" EXACT [] synonym: "Sphincter ani externus" EXACT [] synonym: "sphincter ani externus" RELATED [] xref: FMA:21930 xref: MA:0001531 xref: ncithesaurus:External_Anal_Sphincter is_a: UBERON:0002379 ! perineal muscle relationship: part_of UBERON:0001353 ! anal part of perineum [Term] id: UBERON:0001368 name: obturator externus alt_id: UBERON:FMA_22299-MA_0002347 def: "." [Wikipedia:Obturator_externus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "External obturator" EXACT [] synonym: "external obturator" EXACT [] synonym: "Obturator externus" EXACT [] xref: FMA:22299 xref: MA:0002347 is_a: UBERON:0002000 ! gluteal muscle [Term] id: UBERON:0001369 name: iliacus alt_id: UBERON:FMA_22310-MA_0002318 def: "." [Wikipedia:Iliacus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anterior muscle of pelvic girdle" EXACT [] synonym: "anterior muscle of pelvic girdle" EXACT [] synonym: "Iliacus" EXACT [] xref: FMA:22310 xref: MA:0002318 xref: ncithesaurus:Iliacus is_a: UBERON:0001497 ! muscle of pelvic girdle [Term] id: UBERON:0001370 name: gluteus maximus alt_id: UBERON:FMA_22314-MA_0002309 def: "." [Wikipedia:Gluteus_maximus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Gluteus maximus" EXACT [] synonym: "gluteus superficialis" RELATED [] synonym: "M.gluteus maximus" EXACT [] synonym: "m.gluteus maximus" EXACT [] xref: FMA:22314 xref: MA:0002309 xref: ncithesaurus:Gluteus_Maximus xref: OpenCyc:Mx4rvVjdMZwpEbGdrcN5Y29ycA is_a: UBERON:0002000 ! gluteal muscle [Term] id: UBERON:0001371 name: gluteus medius alt_id: UBERON:FMA_22315-MA_0002310 def: "." [Wikipedia:Gluteus_medius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Gluteus medius" EXACT [] xref: FMA:22315 xref: galen:GluteusMedius xref: MA:0002310 xref: ncithesaurus:Gluteus_Medius is_a: UBERON:0002000 ! gluteal muscle [Term] id: UBERON:0001372 name: psoas minor alt_id: UBERON:FMA_22350-MA_0002359 def: "." [Wikipedia:Psoas_minor] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Psoas minor" EXACT [] synonym: "Psoas minor muscle" EXACT [] synonym: "psoas minor muscle" EXACT [] xref: BTO:0001878 xref: FMA:22350 xref: MA:0002359 xref: ncithesaurus:Psoas_Minor is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001373 name: sartorius alt_id: UBERON:FMA_22353-MA_0002368 def: "." [Wikipedia:Sartorius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sartorius" EXACT [] xref: BTO:0001215 xref: EHDAA:10583 xref: FMA:22353 xref: HOG:0001192 xref: MA:0002368 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001374 name: biceps femoris alt_id: UBERON:FMA_22356-MA_0002270 def: "." [Wikipedia:Biceps_femoris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Biceps femoris" EXACT [] xref: BTO:0003418 xref: EFO:0001418 xref: FMA:22356 xref: galen:BicepsFemoris xref: MA:0002270 xref: ncithesaurus:Biceps_Femoris is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0001375 name: semitendinosus alt_id: UBERON:FMA_22357-MA_0002375 def: "." [Wikipedia:Semitendinosus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Semitendinosus" EXACT [] synonym: "Semitendinosus muscle" EXACT [] synonym: "semitendinosus muscle" EXACT [] xref: BTO:0001236 xref: FMA:22357 xref: MA:0002375 xref: ncithesaurus:Semitendinosus is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0001376 name: tensor fasciae latae alt_id: UBERON:FMA_22423-MA_0002391 def: "." [Wikipedia:Tensor_fasciae_latae] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "tensor fasciae lata" EXACT [] synonym: "Tensor fasciae latae" EXACT [] synonym: "Tensor of fascia lata" EXACT [] synonym: "tensor of fascia lata" EXACT [] xref: FMA:22423 xref: MA:0002391 xref: ncithesaurus:Tensor_Fasciae_Lata is_a: UBERON:0002000 ! gluteal muscle [Term] id: UBERON:0001377 name: quadriceps femoris alt_id: UBERON:FMA_22428-MA_0002363 def: "." [Wikipedia:Quadriceps_femoris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Quadriceps" EXACT [] synonym: "quadriceps" EXACT [] synonym: "Quadriceps femoris" EXACT [] xref: BTO:0001149 xref: EFO:0001938 xref: EHDAA:8299 xref: FMA:22428 xref: HOG:0000828 xref: MA:0002363 xref: OpenCyc:Mx4rvVjd-JwpEbGdrcN5Y29ycA is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0001378 name: rectus femoris alt_id: UBERON:FMA_22430-MA_0002365 def: "." [Wikipedia:Rectus_femoris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Musculus rectos femoris" EXACT [] synonym: "musculus rectos femoris" EXACT [] synonym: "Rectus femoris" EXACT [] xref: BTO:0001564 xref: FMA:22430 xref: MA:0002365 xref: ncithesaurus:Rectus_Femoris is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0001377 ! quadriceps femoris [Term] id: UBERON:0001379 name: vastus lateralis alt_id: UBERON:FMA_22431-MA_0002402 def: "." [Wikipedia:Vastus_lateralis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Vastus lateralis" EXACT [] xref: BTO:0001563 xref: EFO:0001937 xref: FMA:22431 xref: MA:0002402 xref: ncithesaurus:Vastus_Lateralis is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0001377 ! quadriceps femoris [Term] id: UBERON:0001380 name: vastus medialis alt_id: UBERON:FMA_22432-MA_0002403 def: "." [Wikipedia:Vastus_medialis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Vastus medialis" EXACT [] xref: FMA:22432 xref: MA:0002403 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0001377 ! quadriceps femoris [Term] id: UBERON:0001381 name: semimembranosus alt_id: UBERON:FMA_22438-MA_0002371 def: "." [Wikipedia:Semimembranosus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Semimembranosus" EXACT [] xref: BTO:0003177 xref: FMA:22438 xref: MA:0002371 xref: ncithesaurus:Semimembranosus is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0001382 name: pectineus alt_id: UBERON:FMA_22440-MA_0002353 def: "." [Wikipedia:Pectineus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pectineus" EXACT [] xref: FMA:22440 xref: MA:0002353 xref: ncithesaurus:Pectineus is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0001383 name: muscle of leg alt_id: UBERON:FMA_22471-MA_0000672 def: "." [Wikipedia:Leg_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Leg muscle" EXACT [] synonym: "leg muscle" EXACT [] synonym: "Muscle of leg" EXACT [] xref: BTO:0000722 xref: FMA:22471 xref: MA:0000672 is_a: UBERON:0003661 ! implied link automatically realized ! limb muscle intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000978 ! leg relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001384 name: primary motor cortex alt_id: UBERON:FMA_224854-MA_0000907 def: "a brain region that in humans is located in the posterior portion of the frontal lobe. It works in association with pre-motor areas to plan and execute movements. M1 contains large neurons known as Betz cells which send long axons down the spinal cord to synapse onto alpha motor neurons which connect to the muscles. Pre-motor areas are involved in planning actions (in concert with the basal ganglia) and refining movements based upon sensory input (this requires the cerebellum). The human primary motor cortex is located in the dorsal part of the precentral gyrus and the anterior bank of the central sulcus. The precentral gyrus is in front of the postcentral gyrus from which it is separated by the central sulcus. Its anterior border is the precentral sulcus, while inferiorly it borders to the lateral fissure (Sylvian fissure). Medially, it is contiguous with the paracentral lobule." [Wikipedia:Primary_motor_cortex] comment: TODO: in MA this is asserted to be part_of BOTH frontal and parietal cortex. FMA makes no commitment beyond cerebral cortex. Wikipedia says frontal lobe. Check if species difference or difference in definition subset: uberon_slim synonym: "Primary motor cortex" EXACT [] xref: EFO:0002472 xref: FMA:224854 xref: MA:0000907 is_a: UBERON:0003208 relationship: part_of UBERON:0001870 ! frontal lobe relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0001385 name: tibialis anterior alt_id: UBERON:FMA_22532-MA_0002395 def: "." [Wikipedia:Tibialis_anterior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Tibialis anterior" EXACT [] synonym: "tibilais cranialis" EXACT [] xref: BTO:0001382 xref: FMA:22532 xref: MA:0002395 is_a: UBERON:0001383 ! muscle of leg [Term] id: UBERON:0001386 name: extensor digitorum longus alt_id: UBERON:FMA_22534-MA_0002295 def: "." [Wikipedia:Extensor_digitorum_longus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Extensor digitorum longus" EXACT [] xref: BTO:0000436 xref: FMA:22534 xref: MA:0002295 xref: ncithesaurus:Extensor_Digitorum_Longus is_a: UBERON:0001383 ! muscle of leg [Term] id: UBERON:0001387 name: fibularis longus alt_id: UBERON:FMA_22539-MA_0002356 def: "." [Wikipedia:Fibularis_longus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Fibularis longus" EXACT [] synonym: "Peroneus longus" EXACT [] synonym: "peroneus longus" EXACT [] xref: FMA:22539 xref: MA:0002356 xref: ncithesaurus:Peroneus_Longus is_a: UBERON:0001383 ! muscle of leg [Term] id: UBERON:0001388 name: gastrocnemius alt_id: UBERON:FMA_22541-MA_0002306 def: "." [Wikipedia:Gastrocnemius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Gastrocnemius" EXACT [] synonym: "M.gastrocnemius" EXACT [] synonym: "m.gastrocnemius" EXACT [] xref: BTO:0000506 xref: EFO:0001413 xref: EHDAA:8293 xref: FMA:22541 xref: galen:Gastrocnemius xref: HOG:0001193 xref: MA:0002306 is_a: UBERON:0001383 ! muscle of leg relationship: part_of UBERON:0001665 ! triceps surae [Term] id: UBERON:0001389 name: soleus alt_id: UBERON:FMA_22542-MA_0002424 def: "a powerful muscle in the back part of the lower leg (the calf). It runs from just below the knee to the heel, and is involved in standing and walking. It is closely connected to the gastrocnemius muscle and some anatomists consider them to be a single muscle, the triceps surae. Its name is derived from the solefish whose shape it resembles. The soleus is located in the superficial posterior compartment of the leg. Not all mammals have a soleus muscle; one familiar species that lacks the soleus is the dog." [Wikipedia:Soleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Soleus" EXACT [] xref: BTO:0001265 xref: FMA:22542 xref: MA:0002424 xref: ncithesaurus:Soleus is_a: UBERON:0001383 ! muscle of leg relationship: part_of UBERON:0001665 ! triceps surae [Term] id: UBERON:0001390 name: sural artery alt_id: UBERON:FMA_22570-MA_0002058 def: "." [Wikipedia:Sural_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sural artery" EXACT [] xref: FMA:22570 xref: MA:0002058 xref: ncithesaurus:External_Sural_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001391 name: popliteus alt_id: UBERON:FMA_22590-MA_0002554 def: "." [Wikipedia:Popliteus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "M.popliteus" EXACT [] synonym: "m.popliteus" EXACT [] synonym: "Popliteal muscle" EXACT [] synonym: "popliteal muscle" EXACT [] synonym: "Popliteus" EXACT [] xref: FMA:22590 xref: MA:0002554 is_a: UBERON:0001383 ! muscle of leg [Term] id: UBERON:0001392 name: flexor hallucis longus alt_id: UBERON:FMA_22593-MA_0002301 def: "." [Wikipedia:Flexor_hallucis_longus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Flexor hallucis longus" EXACT [] xref: FMA:22593 xref: MA:0002301 xref: ncithesaurus:Flexor_Hallucis_Longus is_a: UBERON:0001383 ! muscle of leg [Term] id: UBERON:0001393 name: auditory cortex alt_id: UBERON:FMA_226221-MA_0000942 def: "." [Wikipedia:Auditory_cortex] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Auditory cortex" EXACT [] xref: FMA:226221 xref: GAID:682 xref: MA:0000942 xref: ncithesaurus:Auditory_Cortex is_a: UBERON:0003208 relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0001394 name: axillary artery alt_id: UBERON:FMA_22654-MA_0002573 def: "." [Wikipedia:Axillary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Axillary artery" EXACT [] synonym: "Axillary part of trunk of subclavian artery" EXACT [] synonym: "axillary part of trunk of subclavian artery" EXACT [] xref: FMA:22654 xref: GAID:473 xref: galen:AxillaryArtery xref: MA:0002573 xref: ncithesaurus:Axillary_Artery is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001009 ! circulatory system relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001395 name: thoraco-acromial artery alt_id: UBERON:FMA_22671-MA_0002064 def: "." [Wikipedia:Thoraco-acromial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Acromiothoracic artery" EXACT [] synonym: "acromiothoracic artery" EXACT [] synonym: "Thoraco-acromial artery" EXACT [] synonym: "Thoracoacromial artery" EXACT [] synonym: "thoracoacromial artery" EXACT [] xref: FMA:22671 xref: MA:0002064 xref: ncithesaurus:Acromial_Thoracic_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003506 ! implied link automatically realized ! chest blood vessel is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001396 name: lateral thoracic artery alt_id: UBERON:FMA_22674-MA_0001989 def: "." [Wikipedia:Lateral_thoracic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "External mammary artery" EXACT [] synonym: "external mammary artery" EXACT [] synonym: "Lateral thoracic artery" EXACT [] xref: FMA:22674 xref: MA:0001989 xref: ncithesaurus:Lateral_Thoracic_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003506 ! implied link automatically realized ! chest blood vessel is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001397 name: subscapular artery alt_id: UBERON:FMA_22677-MA_0002050 def: "." [Wikipedia:Subscapular_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Subscapular artery" EXACT [] xref: FMA:22677 xref: MA:0002050 xref: ncithesaurus:Subscapular_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001398 name: brachial artery alt_id: UBERON:FMA_22689-MA_0001921 def: "." [Wikipedia:Brachial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Brachial artery" EXACT [] synonym: "Brachial part of trunk of subclavian artery" EXACT [] synonym: "brachial part of trunk of subclavian artery" EXACT [] xref: FMA:22689 xref: GAID:475 xref: galen:BrachialArtery xref: MA:0001921 xref: ncithesaurus:Brachial_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001399 name: deep brachial artery alt_id: UBERON:FMA_22695-MA_0002026 def: "." [Wikipedia:Deep_brachial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Deep brachial artery" EXACT [] synonym: "Profunda brachii artery" EXACT [] synonym: "profunda brachii artery" EXACT [] xref: FMA:22695 xref: MA:0002026 is_a: UBERON:0001637 ! artery is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0001400 name: iliocostalis thoracis alt_id: UBERON:FMA_22703-MA_0002320 def: "." [Wikipedia:Iliocostalis_thoracis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Iliocostalis thoracis" EXACT [] xref: FMA:22703 xref: MA:0002320 is_a: UBERON:0002251 ! iliocostalis [Term] id: UBERON:0001401 name: longissimus thoracis alt_id: UBERON:FMA_22709-MA_0002339 def: "." [Wikipedia:Longissimus_thoracis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Longissimus thoracis" EXACT [] xref: BTO:0001651 xref: FMA:22709 xref: MA:0002339 xref: ncithesaurus:Longissimus_Thoracis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001402 name: longissimus cervicis alt_id: UBERON:FMA_22711-MA_0002337 def: "." [Wikipedia:Longissimus_cervicis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Longissimus cervicis" EXACT [] xref: BTO:0001650 xref: FMA:22711 xref: MA:0002337 xref: ncithesaurus:Longissimus_Cervicis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001403 name: longissimus capitis alt_id: UBERON:FMA_22714-MA_0002336 def: "." [Wikipedia:Longissimus_capitis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Longissimus capitis" EXACT [] xref: BTO:0001649 xref: FMA:22714 xref: MA:0002336 xref: ncithesaurus:Longissimus_Capitis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001404 name: radial artery alt_id: UBERON:FMA_22730-MA_0002034 def: "." [Wikipedia:Radial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Radial artery" EXACT [] xref: FMA:22730 xref: GAID:506 xref: MA:0002034 xref: ncithesaurus:Radial_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001405 name: spinalis thoracis alt_id: UBERON:FMA_22765-MA_0002381 def: "." [Wikipedia:Spinalis_thoracis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Spinalis thoracis" EXACT [] xref: FMA:22765 xref: MA:0002381 xref: ncithesaurus:Spinalis_Thoracis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001406 name: ulnar artery alt_id: UBERON:FMA_22796-MA_0002069 def: "." [Wikipedia:Ulnar_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ulnar artery" EXACT [] xref: FMA:22796 xref: GAID:515 xref: MA:0002069 xref: ncithesaurus:Ulnar_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001407 name: semispinalis thoracis alt_id: UBERON:FMA_22828-MA_0002374 def: "." [Wikipedia:Semispinalis_thoracis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Semispinalis thoracis" EXACT [] xref: FMA:22828 xref: MA:0002374 xref: ncithesaurus:Semispinalis_Thoracis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001408 name: semispinalis cervicis alt_id: UBERON:FMA_22829-MA_0002373 def: "." [Wikipedia:Semispinalis_cervicis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Semispinalis cervicis" EXACT [] xref: FMA:22829 xref: MA:0002373 xref: ncithesaurus:Semispinalis_Cervicis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001409 name: semispinalis capitis alt_id: UBERON:FMA_22830-MA_0002372 def: "." [Wikipedia:Semispinalis_capitis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Semispinalis capitis" EXACT [] xref: FMA:22830 xref: MA:0002372 xref: ncithesaurus:Semispinalis_Capitis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001410 name: common palmar digital artery alt_id: UBERON:FMA_22852-MA_0001957 def: "." [Wikipedia:Common_palmar_digital_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "common palmar digital arteries" EXACT [] synonym: "Common palmar digital artery" EXACT [] xref: FMA:22852 xref: MA:0001957 xref: ncithesaurus:Common_Palmar_Digital_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001411 name: basilic vein alt_id: UBERON:FMA_22908-MA_0002086 def: "." [Wikipedia:Basilic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Basilic vein" EXACT [] synonym: "Basilic vein of forearm" EXACT [] synonym: "basilic vein of forearm" EXACT [] xref: FMA:22908 xref: galen:BasilicVein xref: MA:0002086 xref: ncithesaurus:Basilic_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0001412 name: common palmar digital vein alt_id: UBERON:FMA_22923-MA_0002121 comment: This class was created automatically from a combination of ontologies synonym: "Common palmar digital vein" EXACT [] xref: FMA:22923 xref: MA:0002121 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001413 name: brachial vein alt_id: UBERON:FMA_22934-MA_0002087 def: "." [Wikipedia:Brachial_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Brachial vein" EXACT [] xref: FMA:22934 xref: galen:BrachialVein xref: MA:0002087 xref: ncithesaurus:Brachial_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0001414 name: median cubital vein alt_id: UBERON:FMA_22963-MA_0002176 def: "." [Wikipedia:Median_cubital_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Median cubital vein" EXACT [] xref: FMA:22963 xref: MA:0002176 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001415 name: skin of pelvis alt_id: UBERON:FMA_22984-MA_0000546 comment: This class was created automatically from a combination of ontologies synonym: "Pelvic skin" EXACT [] synonym: "pelvic skin" EXACT [] synonym: "pelvis skin" EXACT [] synonym: "Skin of pelvis" EXACT [] xref: FMA:22984 xref: MA:0000546 is_a: UBERON:0001085 ! skin of trunk intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002355 ! pelvis relationship: part_of UBERON:0001085 ! skin of trunk relationship: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0001416 name: skin of abdomen alt_id: UBERON:FMA_22988-MA_0000523 comment: This class was created automatically from a combination of ontologies synonym: "abdomen skin" EXACT [] synonym: "Abdominal skin" EXACT [] synonym: "abdominal skin" EXACT [] synonym: "Skin of abdomen" EXACT [] xref: EFO:0000214 xref: FMA:22988 xref: FMA:23000 xref: MA:0000523 xref: ncithesaurus:Abdominal_Skin is_a: UBERON:0001085 ! skin of trunk intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0001417 name: skin of neck alt_id: UBERON:FMA_23021-MA_0000590 comment: This class was created automatically from a combination of ontologies synonym: "Neck skin" EXACT [] synonym: "neck skin" EXACT [] synonym: "Skin of neck" EXACT [] xref: FMA:23021 xref: FMA:23022 xref: MA:0000590 xref: ncithesaurus:Neck_Skin is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000974 ! neck relationship: part_of UBERON:0000974 ! neck [Term] id: UBERON:0001418 name: skin of thorax alt_id: UBERON:FMA_23028-MA_0000564 comment: This class was created automatically from a combination of ontologies synonym: "Skin of thorax" EXACT [] synonym: "Thoracic skin" EXACT [] synonym: "thoracic skin" EXACT [] synonym: "thorax skin" EXACT [] synonym: "upper body skin" RELATED [] xref: FMA:23028 xref: FMA:23029 xref: MA:0000564 is_a: UBERON:0001085 ! skin of trunk intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000915 ! thorax relationship: part_of UBERON:0000915 ! thorax [Term] id: UBERON:0001419 name: skin of limb alt_id: UBERON:FMA_23100-MA_0000694 comment: This class was created automatically from a combination of ontologies synonym: "Limb skin" EXACT [] synonym: "limb skin" EXACT [] synonym: "Skin of limb" EXACT [] xref: FMA:23100 xref: MA:0000694 is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002101 ! limb relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0001420 name: subscapular vein alt_id: UBERON:FMA_23113-MA_0002224 comment: This class was created automatically from a combination of ontologies synonym: "Subscapular vein" EXACT [] xref: FMA:23113 xref: MA:0002224 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001421 name: pectoral girdle alt_id: UBERON:FMA_23217-MA_0000292-MIAA_0000181-XAO_0003063-ZFA_0000407 def: "Subdivision of free upper limb, which is the proximal segment of an upper limb and links the free upper limb to the trunk; it is demarcated by the plane of the surface of the glenoid fossa from the free upper limb; together with the free upper limb, it constitutes the upper limb. Examples: There are only two instances, right and left pectoral girdles. // Arched skeletal structure that supports the forelimbs, the rudiments of which can be distinguished in mesenchyme at NF stage 51, and is complete by NF stage 60." [ISBN:0471209627, NLM:pectoral+girdle, Wikipedia:Pectoral_girdle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "girdle - pectoral" EXACT [] synonym: "Pectoral girdle" EXACT [] synonym: "pectoral girdle bone" EXACT [] synonym: "shoulder bones" RELATED [] synonym: "Shoulder girdle" EXACT [] synonym: "shoulder girdle" RELATED [] synonym: "Upper limb girdle" EXACT [] synonym: "upper limb girdle" EXACT [] xref: AAO:0000422 xref: EFO:0000946 xref: FMA:23217 xref: HOG:0001156 xref: MA:0000292 xref: MAT:0000181 xref: MIAA:0000181 xref: ncithesaurus:Shoulder_Girdle xref: TAO:0000407 xref: XAO:0003063 xref: ZFA:0000407 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0001443 ! chest relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0001422 name: facial lymphatic vessel alt_id: UBERON:FMA_233946-ZFA_0005108 comment: This class was created automatically from a combination of ontologies synonym: "Buccal lymphatic vessel" EXACT [] synonym: "buccal lymphatic vessel" EXACT [] synonym: "Facial lymphatic vessel" EXACT [] synonym: "FL" RELATED [] xref: FMA:233946 xref: TAO:0005108 xref: ZFA:0005108 is_a: UBERON:0001473 ! lymphatic vessel intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0001456 ! face [Term] id: UBERON:0001423 name: radius alt_id: UBERON:FMA_23463-MA_0001357 def: "." [Wikipedia:Radius_(bone)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Radius" EXACT [] xref: AAO:0000788 xref: FMA:23463 xref: GAID:185 xref: MA:0001357 xref: ncithesaurus:Radius is_a: UBERON:0001440 ! skeleton of upper limb relationship: part_of UBERON:0002386 ! lower segment of arm [Term] id: UBERON:0001424 name: ulna alt_id: UBERON:FMA_23466-MA_0001358 def: "." [Wikipedia:Ulna] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ulna" EXACT [] xref: AAO:0000789 xref: FMA:23466 xref: GAID:188 xref: MA:0001358 xref: ncithesaurus:Ulna is_a: UBERON:0001440 ! skeleton of upper limb relationship: part_of UBERON:0002386 ! lower segment of arm [Term] id: UBERON:0001425 name: pectoral lymphatic vessel alt_id: UBERON:FMA_234865-ZFA_0005107 comment: This class was created automatically from a combination of ontologies synonym: "Pectoral lymphatic vessel" EXACT [] synonym: "PL" RELATED [] xref: FMA:234865 xref: TAO:0005107 xref: ZFA:0005107 is_a: UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0001426 name: jugular lymphatic vessel alt_id: UBERON:FMA_234908-ZFA_0005109 comment: This class was created automatically from a combination of ontologies synonym: "JL" RELATED [] synonym: "Jugular lymphatic vessel" EXACT [] xref: FMA:234908 xref: TAO:0005109 xref: ZFA:0005109 is_a: UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0001427 name: scaphoid alt_id: UBERON:FMA_23709-MA_0002555 def: "." [Wikipedia:Scaphoid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Navicular bone of hand" EXACT [] synonym: "navicular bone of hand" EXACT [] synonym: "navicular of hand" RELATED [] synonym: "radial carpal bone" RELATED [] synonym: "Scaphoid" EXACT [] synonym: "Scaphoid bone" EXACT [] synonym: "scaphoid bone" EXACT [] xref: FMA:23709 xref: GAID:180 xref: MA:0002555 xref: ncithesaurus:Scaphoid_Bone is_a: UBERON:0001480 ! proximal carpal bone relationship: part_of UBERON:0001462 ! wrist relationship: part_of UBERON:0001480 ! proximal carpal bone [Term] id: UBERON:0001428 name: lunate alt_id: UBERON:FMA_23712-MA_0002556 def: "." [Wikipedia:Lunate] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Intermediate carpal bone" EXACT [] synonym: "intermediate carpal bone" RELATED [] synonym: "Lunate" EXACT [] synonym: "Lunate bone" EXACT [] synonym: "lunate bone" EXACT [] synonym: "semilunar" RELATED [] synonym: "Semilunar bone" EXACT [] synonym: "semilunar bone" EXACT [] xref: FMA:23712 xref: GAID:181 xref: MA:0002556 xref: ncithesaurus:Lunate_Bone is_a: UBERON:0001480 ! proximal carpal bone relationship: part_of UBERON:0001462 ! wrist relationship: part_of UBERON:0001480 ! proximal carpal bone [Term] id: UBERON:0001429 name: pisiform alt_id: UBERON:FMA_23718-MA_0001339 def: "." [Wikipedia:Pisiform] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "accessory carpal bone" RELATED [] synonym: "Pisiform" EXACT [] synonym: "Pisiform bone" EXACT [] synonym: "pisiform bone" EXACT [] xref: FMA:23718 xref: MA:0001339 xref: ncithesaurus:Pisiform_Bone is_a: UBERON:0001480 ! proximal carpal bone relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001430 name: trapezium alt_id: UBERON:FMA_23721-MA_0001340 def: "." [Wikipedia:Trapezium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Greater multangular bone" EXACT [] synonym: "greater multangular bone" EXACT [] synonym: "greater multiangular" RELATED [] synonym: "hand distal carpal bone 1" RELATED [] synonym: "Trapezial bone" EXACT [] synonym: "trapezial bone" EXACT [] synonym: "Trapezium" EXACT [] synonym: "Trapezium bone" EXACT [] synonym: "trapezium bone" EXACT [] xref: FMA:23721 xref: MA:0001340 xref: ncithesaurus:Trapezial_Bone xref: OpenCyc:Mx4rv3CbrJwpEbGdrcN5Y29ycA is_a: UBERON:0001481 ! distal carpal bone relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001431 name: trapezoid alt_id: UBERON:FMA_23724-MA_0001341 def: "." [Wikipedia:Trapezoid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "hand distal carpal bone 2" RELATED [] synonym: "Lesser multangular bone" EXACT [] synonym: "lesser multangular bone" EXACT [] synonym: "lesser multiangular" RELATED [] synonym: "Trapezoid" EXACT [] synonym: "Trapezoid bone" EXACT [] synonym: "trapezoid bone" EXACT [] xref: FMA:23724 xref: MA:0001341 xref: ncithesaurus:Trapezoid_Bone xref: OpenCyc:Mx4rvVvsjpwpEbGdrcN5Y29ycA is_a: UBERON:0001481 ! distal carpal bone relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001432 name: capitate alt_id: UBERON:FMA_23727-MA_0001342 def: "." [Wikipedia:Capitate] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Capitate" EXACT [] synonym: "Capitate bone" EXACT [] synonym: "capitate bone" EXACT [] synonym: "hand distal carpal bone 3" RELATED [] synonym: "Os Magnum (Carpus)" EXACT [] synonym: "os magnum (carpus)" EXACT [] xref: FMA:23727 xref: galen:Capitate xref: MA:0001342 xref: ncithesaurus:Capitate_Bone xref: OpenCyc:Mx4rvZFPrZwpEbGdrcN5Y29ycA is_a: UBERON:0001481 ! distal carpal bone relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001433 name: hamate alt_id: UBERON:FMA_23730-MA_0001343 def: "." [Wikipedia:Hamate] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hamate" EXACT [] synonym: "Hamate bone" EXACT [] synonym: "hamate bone" EXACT [] synonym: "hand distal carpal bone 4" RELATED [] synonym: "unciform" RELATED [] synonym: "Unciform bone" EXACT [] synonym: "unciform bone" EXACT [] synonym: "uncinate" RELATED [] xref: FMA:23730 xref: galen:Hamate xref: MA:0001343 xref: ncithesaurus:Hamate_Bone is_a: UBERON:0001481 ! distal carpal bone relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001434 name: skeleton alt_id: UBERON:FMA_23875-FMA_23881-MA_0000018-MIAA_0000032-XAO_0003060-ZFA_0000434 def: "Set of organ system subdivision which consists of all the bones in the body. // Anatomical system that provides physical support to the organism." [AAO:0000566, Wikipedia:Skeleton] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "set of all bones" EXACT [] synonym: "set of bones of body" EXACT [] synonym: "skeletal system" EXACT [] synonym: "skeleton component" RELATED [] synonym: "skeleton system" EXACT [] xref: AAO:0000566 xref: BTO:0001486 xref: EFO:0000806 xref: EHDAA:5047 xref: EHDAA:8005 xref: EHDAA:8041 xref: FMA:23875 xref: FMA:23881 xref: GAID:177 xref: HOG:0001254 xref: MA:0000018 xref: MAT:0000032 xref: MIAA:0000032 xref: ncithesaurus:Skeletal_System xref: OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA xref: TAO:0000434 xref: XAO:0003060 xref: ZFA:0000434 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001474 ! bone disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system relationship: part_of UBERON:0002204 ! musculoskeletal system relatiosnhip: has_part UBERON:0001474 [Term] id: UBERON:0001435 name: carpal bone alt_id: UBERON:FMA_23889-MA_0000296 def: "." [Wikipedia:Carpal_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bone of carpus" EXACT [] synonym: "bone of carpus" EXACT [] synonym: "Carpal bone" EXACT [] xref: FMA:23889 xref: GAID:179 xref: galen:CarpalBone xref: MA:0000296 xref: ncithesaurus:Carpal_Bone is_a: UBERON:0001442 ! skeleton of hand [Term] id: UBERON:0001436 name: phalanx of finger alt_id: UBERON:FMA_23914-MA_0000306 def: "a phalanx that is part of a finger[Obol]." [Obol:obol] comment: This class was created automatically from a combination of ontologies synonym: "Hand phalanx" EXACT [] synonym: "hand phalanx" EXACT [] synonym: "Phalanx of finger" EXACT [] synonym: "Phalanx of hand" EXACT [] synonym: "phalanx of hand" EXACT [] xref: FMA:23914 xref: MA:0000306 xref: ncithesaurus:Hand_Phalanx is_a: UBERON:0003221 ! phalanx is_a: UBERON:0003460 ! implied link automatically realized ! arm bone is_a: UBERON:0003607 ! implied link automatically realized ! forelimb long bone intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0002389 ! finger relationship: part_of UBERON:0002389 ! finger [Term] id: UBERON:0001437 name: epiphysis alt_id: UBERON:FMA_24012-ZFA_0000019 def: "Subdivision of long bone which forms its expanded proximal or distal articular end; together with other the subdivisions of long bone, it constitutes the long bone. Examples: proximal epiphysis of humerus, distal epiphysis of femur." [Wikipedia:Epiphysis, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "End of long bone" EXACT [] synonym: "end of long bone" EXACT [] synonym: "Epiphysis" EXACT [] synonym: "pineal gland" RELATED [] xref: AAO:0000742 xref: BTO:0000413 xref: FMA:24012 xref: TAO:0000019 is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0001438 name: metaphysis alt_id: UBERON:FMA_24014-MA_0001363 def: "Subdivision of diaphysis which forms the proximal or distal end of diaphysis next to the epiphysis; together with diaphysis proper, it constitutes the diaphysis. Examples: proximal metaphysis of humerus, distal metaphysis of femur." [Wikipedia:Metaphysis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Diaphyseal end of long bone" EXACT [] synonym: "diaphyseal end of long bone" EXACT [] synonym: "long bone metaphysis" EXACT [] synonym: "Metaphysis" EXACT [] xref: FMA:24014 xref: MA:0001363 xref: ncithesaurus:Metaphysis is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002428 ! limb bone [Term] id: UBERON:0001439 name: compact bone alt_id: UBERON:FMA_24018-MA_0001461 def: "." [Wikipedia:Compact_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Compact bone" EXACT [] synonym: "Compact bone tissue" EXACT [] synonym: "compact bone tissue" EXACT [] synonym: "Cortical bone" EXACT [] synonym: "cortical bone" EXACT [] synonym: "Substantia compacta (Pars ossea)" EXACT [] synonym: "substantia compacta (pars ossea)" EXACT [] xref: FMA:24018 xref: galen:CorticalBone xref: MA:0001461 xref: ncithesaurus:Cortical_Bone is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0001440 name: skeleton of upper limb alt_id: UBERON:FMA_24139-MA_0000612 comment: This class was created automatically from a combination of ontologies synonym: "Bones of upper limb" EXACT [] synonym: "bones of upper limb" EXACT [] synonym: "forelimb bone" EXACT [] synonym: "Set of bones of upper limb" EXACT [] synonym: "set of bones of upper limb" EXACT [] synonym: "Skeleton of upper limb" EXACT [] synonym: "Upper limb skeleton" EXACT [] synonym: "upper limb skeleton" EXACT [] xref: FMA:24139 xref: MA:0000612 is_a: UBERON:0000075 ! subdivision of skeleton intersection_of: UBERON:0000075 ! subdivision of skeleton intersection_of: part_of UBERON:0002102 ! forelimb relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0001441 name: skeleton of lower limb alt_id: UBERON:FMA_24140-MA_0000670 def: "." [Wikipedia:Leg_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bones of lower limb" EXACT [] synonym: "bones of lower limb" EXACT [] synonym: "leg bone" EXACT [] synonym: "Lower limb skeleton" EXACT [] synonym: "lower limb skeleton" EXACT [] synonym: "Set of bones of lower limb" EXACT [] synonym: "set of bones of lower limb" EXACT [] synonym: "Skeleton of lower limb" EXACT [] xref: FMA:24140 xref: GAID:198 xref: MA:0000670 xref: OpenCyc:Mx4rvZcKkZwpEbGdrcN5Y29ycA is_a: UBERON:0002091 ! implied link automatically realized ! appendicular skeleton intersection_of: UBERON:0000075 ! subdivision of skeleton intersection_of: part_of UBERON:0002103 ! hindlimb relationship: has_part UBERON:0002428 ! limb bone relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001442 name: skeleton of hand alt_id: UBERON:FMA_24159-MA_0000619 comment: This class was created automatically from a combination of ontologies synonym: "Bones of hand" EXACT [] synonym: "bones of hand" EXACT [] synonym: "hand bone" EXACT [] synonym: "Hand skeleton" EXACT [] synonym: "hand skeleton" EXACT [] synonym: "Set of bones of hand" EXACT [] synonym: "set of bones of hand" EXACT [] synonym: "Skeleton of hand" EXACT [] xref: FMA:24159 xref: MA:0000619 xref: OpenCyc:Mx4rvdHPJJwpEbGdrcN5Y29ycA is_a: UBERON:0001440 ! skeleton of upper limb intersection_of: UBERON:0000075 ! subdivision of skeleton intersection_of: part_of UBERON:0002398 ! hand relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0001443 name: chest alt_id: UBERON:FMA_24216-MA_0000031 def: "Subdivision of thorax, which is the anterolateral part of the thorax and is demarcated from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the back of the thorax, it constitutes the thorax. Examples: There is only one chest." [Wikipedia:Chest] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anterior thoracic region" EXACT [] synonym: "anterior thoracic region" EXACT [] synonym: "Anterolateral part of thorax" EXACT [] synonym: "anterolateral part of thorax" EXACT [] synonym: "Chest" EXACT [] synonym: "Front of thorax" EXACT [] synonym: "front of thorax" EXACT [] synonym: "thoracic body wall" RELATED [] xref: EFO:0000965 xref: FMA:24216 xref: FMA:24816 xref: galen:Chest xref: MA:0000031 xref: ncithesaurus:Chest xref: OpenCyc:Mx4rvVikFZwpEbGdrcN5Y29ycA is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000915 ! thorax [Term] id: UBERON:0001444 name: subdivision of head alt_id: UBERON:FMA_24218-XAO_0000040 comment: This class was created automatically from a combination of ontologies synonym: "Head region" EXACT [] synonym: "head region" EXACT [] synonym: "Head subdivision" EXACT [] synonym: "head subdivision" EXACT [] synonym: "Region of head" EXACT [] synonym: "region of head" EXACT [] synonym: "Subdivision of head" EXACT [] xref: FMA:24218 xref: XAO:0000040 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0001445 name: skeleton of foot alt_id: UBERON:FMA_24222-MA_0000643 comment: This class was created automatically from a combination of ontologies synonym: "foot bone" EXACT [] synonym: "Foot skeleton" EXACT [] synonym: "foot skeleton" EXACT [] synonym: "Set of bones of foot" EXACT [] synonym: "set of bones of foot" EXACT [] synonym: "Skeleton of foot" EXACT [] xref: FMA:24222 xref: GAID:192 xref: MA:0000643 xref: ncithesaurus:Foot_Bone is_a: UBERON:0001441 ! implied link automatically realized ! skeleton of lower limb intersection_of: UBERON:0000075 ! subdivision of skeleton intersection_of: part_of UBERON:0002387 ! foot relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0001446 name: fibula alt_id: UBERON:FMA_24479-MA_0001360 def: "." [Wikipedia:Fibula] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Fibula" EXACT [] xref: AAO:0000891 xref: BTO:0002346 xref: FMA:24479 xref: GAID:202 xref: galen:Fibula xref: MA:0001360 xref: ncithesaurus:Fibula is_a: UBERON:0001441 ! skeleton of lower limb [Term] id: UBERON:0001447 name: tarsal bone alt_id: UBERON:FMA_24491-MA_0000297 def: "." [Wikipedia:Ankle_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ankle bone" EXACT [] synonym: "ankle bone" EXACT [] synonym: "Bone of ankle" EXACT [] synonym: "bone of ankle" EXACT [] synonym: "Bone of tarsus" EXACT [] synonym: "bone of tarsus" EXACT [] synonym: "Tarsal bone" EXACT [] xref: BTO:0002343 xref: FMA:24491 xref: GAID:194 xref: MA:0000297 xref: ncithesaurus:Tarsal_Bone is_a: UBERON:0001445 ! skeleton of foot is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002388 ! ankle [Term] id: UBERON:0001448 name: metatarsal bone alt_id: UBERON:FMA_24492-MA_0000303 def: "." [Wikipedia:Metatarsal_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Metatarsal bone" EXACT [] xref: BTO:0002347 xref: FMA:24492 xref: GAID:193 xref: MA:0000303 xref: ncithesaurus:Metatarsal_Bone is_a: UBERON:0001445 ! skeleton of foot is_a: UBERON:0003821 ! metacarpal/metatarsal bone relationship: part_of UBERON:0000983 ! metatarsus [Term] id: UBERON:0001449 name: phalanx of toe alt_id: UBERON:FMA_24493-MA_0000305 comment: This class was created automatically from a combination of ontologies synonym: "phalanx of foot digit 1" EXACT [] xref: FMA:24493 xref: MA:0001381 is_a: UBERON:0003221 ! phalanx is_a: UBERON:0003608 ! implied link automatically realized ! hindlimb long bone intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0001466 ! toe relationship: part_of UBERON:0001466 ! toe [Term] id: UBERON:0001450 name: calcaneus alt_id: UBERON:FMA_24496-MA_0001348 def: "." [Wikipedia:Calcaneus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "calcaneum" EXACT [] synonym: "Calcaneus" EXACT [] synonym: "fibulare" RELATED [] synonym: "Os calcis" EXACT [] synonym: "os calcis" EXACT [] xref: FMA:24496 xref: galen:Calcaneum xref: MA:0001348 xref: ncithesaurus:Calcaneum is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001451 name: navicular bone of foot alt_id: UBERON:FMA_24499-MA_0001349 def: "." [Wikipedia:Navicular] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "central tarsal bone" RELATED [] synonym: "centrale" RELATED [] synonym: "Navicular" EXACT [] synonym: "navicular" EXACT [] synonym: "Navicular bone of foot" EXACT [] synonym: "Navicular of foot" EXACT [] synonym: "navicular of foot" EXACT [] xref: FMA:24499 xref: MA:0001349 xref: OpenCyc:Mx4rv67esJwpEbGdrcN5Y29ycA is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001452 name: medial cuneiform bone alt_id: UBERON:FMA_24518-MA_0001352 def: "." [Wikipedia:Medial_cuneiform_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "First cuneiform bone" EXACT [] synonym: "first cuneiform bone" EXACT [] synonym: "foot distal carpal bone 1" RELATED [] synonym: "Medial cuneiform" EXACT [] synonym: "medial cuneiform" EXACT [] synonym: "Medial cuneiform bone" EXACT [] xref: BTO:0002360 xref: FMA:24518 xref: MA:0001352 xref: OpenCyc:Mx4rvYtfH5wpEbGdrcN5Y29ycA is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001453 name: intermediate cuneiform bone alt_id: UBERON:FMA_24519-MA_0001353 def: "." [Wikipedia:Intermediate_cuneiform_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "foot distal carpal bone 2" RELATED [] synonym: "Intermediate cuneiform" EXACT [] synonym: "intermediate cuneiform" EXACT [] synonym: "Intermediate cuneiform bone" EXACT [] synonym: "Middle cuneiform" EXACT [] synonym: "middle cuneiform" EXACT [] synonym: "Second cuneiform bone" EXACT [] synonym: "second cuneiform bone" EXACT [] synonym: "Second cuneiform bone of foot" EXACT [] synonym: "second cuneiform bone of foot" EXACT [] xref: BTO:0002359 xref: FMA:24519 xref: galen:IntermediateCuneiform xref: MA:0001353 is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001454 name: lateral cuneiform bone alt_id: UBERON:FMA_24520-MA_0001354 def: "." [Wikipedia:Lateral_cuneiform_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "foor distal carpal bone 3" RELATED [] synonym: "Lateral cuneiform" EXACT [] synonym: "lateral cuneiform" EXACT [] synonym: "Lateral cuneiform bone" EXACT [] synonym: "Third cuneiform bone" EXACT [] synonym: "third cuneiform bone" EXACT [] xref: BTO:0002358 xref: FMA:24520 xref: galen:LateralCuneiform xref: MA:0001354 is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001455 name: cuboid bone alt_id: UBERON:FMA_24527-MA_0001355 def: "." [Wikipedia:Cuboid_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cuboid" EXACT [] synonym: "cuboid" EXACT [] synonym: "Cuboid bone" EXACT [] synonym: "foot distal carpal bone 4 and 5" RELATED [] xref: BTO:0002357 xref: FMA:24527 xref: galen:Cuboid xref: MA:0001355 xref: ncithesaurus:Cuboid_Bone is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0001456 name: face alt_id: UBERON:FMA_24728-MA_0002473 def: "Subdivision of head which consists of the viscerocranium and all layers superficial to it. Examples: There is only one face." [Wikipedia:Face] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Face" EXACT [] xref: BTO:0003369 xref: FMA:24728 xref: GAID:64 xref: galen:Face xref: HAO:0000316 xref: MA:0002473 xref: ncithesaurus:Face xref: OpenCyc:Mx4rvVi5GZwpEbGdrcN5Y29ycA is_a: UBERON:0001444 ! subdivision of head [Term] id: UBERON:0001457 name: skin of eyelid alt_id: UBERON:FMA_24760-MA_0001256 comment: This class was created automatically from a combination of ontologies synonym: "Eyelid skin" EXACT [] synonym: "eyelid skin" EXACT [] synonym: "Skin of eyelid" EXACT [] xref: FMA:24760 xref: MA:0001256 xref: ncithesaurus:Eyelid_Skin is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0001084 ! implied link automatically realized ! skin of head intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001711 ! eyelid relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0001458 name: skin of lip alt_id: UBERON:FMA_24764-MA_0001579 comment: This class was created automatically from a combination of ontologies synonym: "Lip skin" EXACT [] synonym: "lip skin" EXACT [] synonym: "Skin of lip" EXACT [] xref: FMA:24764 xref: MA:0001579 is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001833 ! lip [Term] id: UBERON:0001459 name: skin of external ear alt_id: UBERON:FMA_24775-MA_0001233 comment: This class was created automatically from a combination of ontologies synonym: "ear skin" EXACT [] synonym: "External ear skin" EXACT [] synonym: "external ear skin" EXACT [] synonym: "Skin of external ear" EXACT [] xref: FMA:24775 xref: MA:0001233 xref: ncithesaurus:Ear_Skin is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0001084 ! implied link automatically realized ! skin of head intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001691 ! external ear relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0001460 name: arm alt_id: UBERON:FMA_24890-MA_0000033 def: "In humans, the arms are the two upper limbs of the body from the shoulder to the hand[GO]." [Wikipedia:Arm] comment: TODO -- resolve ambiguity -- In anatomy, an arm is one of the upper limbs of an animal. The term arm can also be used for analogous structures, such as one of the paired upper limbs of a four-legged animal, or the arms of cephalopods. In the lexicon of human anatomy, the term arm refers specifically to the segment between the shoulder and the elbow. The segment between the elbow and wrist is the forearm. However, in colloquial speech the term arm often refers to the entire upper limb from shoulder to wrist. subset: uberon_slim synonym: "Arm" EXACT [] synonym: "Brachial region" EXACT [] synonym: "brachial region" EXACT [] synonym: "Proximal segment of free upper limb" EXACT [] synonym: "proximal segment of free upper limb" EXACT [] xref: BTO:0001435 xref: EFO:0001410 xref: EHDAA:4164 xref: EHDAA:6210 xref: EHDAA:8275 xref: FMA:24890 xref: GAID:52 xref: galen:Arm xref: HOG:0000339 xref: MA:0000033 xref: ncithesaurus:Arm xref: OpenCyc:Mx4rvVjp5ZwpEbGdrcN5Y29ycA is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0001461 name: elbow alt_id: UBERON:FMA_24901-MA_0000036 def: "." [Wikipedia:Elbow] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cubital region" EXACT [] synonym: "cubital region" EXACT [] synonym: "Elbow" EXACT [] xref: EHDAA:4166 xref: EHDAA:6212 xref: FMA:24901 xref: GAID:54 xref: galen:Elbow xref: HOG:0000340 xref: MA:0000036 xref: OpenCyc:Mx4rvVjjNZwpEbGdrcN5Y29ycA is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0001462 name: wrist alt_id: UBERON:FMA_24922-MA_0000039 def: "." [Wikipedia:Wrist] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Carpal region" EXACT [] synonym: "carpal region" EXACT [] synonym: "Wrist" EXACT [] xref: EHDAA:5196 xref: FMA:24922 xref: GAID:59 xref: MA:0000039 xref: OpenCyc:Mx4rvVjncpwpEbGdrcN5Y29ycA is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0001463 name: hand digit 1 alt_id: UBERON:FMA_24938-MA_0000454 def: "lateral-most digit of the hand in mouse and human[Wikipedia]." [Wikipedia:Thumb] comment: This class represents all instances of the first digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ subset: uberon_slim synonym: "First digit of hand" EXACT [] synonym: "first digit of hand" EXACT [] synonym: "Pollex; Digitus primus [I]" EXACT [] synonym: "pollex; digitus primus [i]" EXACT [] synonym: "thumb" EXACT [] xref: FMA:24938 xref: GAID:58 xref: MA:0000454 xref: ncithesaurus:Hand_Digit_1 xref: OpenCyc:Mx4rvVjVbpwpEbGdrcN5Y29ycA is_a: UBERON:0002389 ! finger [Term] id: UBERON:0001464 name: hip alt_id: UBERON:FMA_24964-MA_0000045 def: "." [Wikipedia:Hip] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hip" EXACT [] synonym: "Hip region" EXACT [] synonym: "hip region" EXACT [] synonym: "Regio coxae" EXACT [] synonym: "regio coxae" EXACT [] xref: BTO:0001457 xref: EFO:0001929 xref: EHDAA:5153 xref: EHDAA:6178 xref: FMA:24964 xref: GAID:47 xref: galen:Hip xref: HOG:0000346 xref: MA:0000045 xref: ncithesaurus:Hip xref: OpenCyc:Mx4rvVjhy5wpEbGdrcN5Y29ycA is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0001271 ! pelvic girdle [Term] id: UBERON:0001465 name: knee alt_id: UBERON:FMA_24974-MA_0000046 def: "." [Wikipedia:Knee] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Knee" EXACT [] xref: BTO:0003595 xref: EFO:0001957 xref: EHDAA:5159 xref: EHDAA:6184 xref: FMA:24974 xref: GAID:48 xref: galen:Knee xref: HOG:0000347 xref: MA:0000046 xref: OpenCyc:Mx4rvVjPKZwpEbGdrcN5Y29ycA is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0001466 name: toe alt_id: UBERON:FMA_25046-MA_0000048 def: "A digit that is part_of a foot[Obol]." [Wikipedia:Toe] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Digit of foot" EXACT [] synonym: "digit of foot" EXACT [] synonym: "Digitus pedis" EXACT [] synonym: "digitus pedis" EXACT [] synonym: "foot digit" EXACT [] synonym: "Toe" EXACT [] xref: BTO:0002348 xref: FMA:25046 xref: GAID:44 xref: MA:0000048 xref: ncithesaurus:Toe xref: OpenCyc:Mx4rvVjCHZwpEbGdrcN5Y29ycA is_a: UBERON:0000027 ! hind digit intersection_of: UBERON:0002544 ! digit intersection_of: part_of UBERON:0002387 ! foot relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0001467 name: shoulder alt_id: UBERON:FMA_25202-MA_0000038 def: "." [Wikipedia:Shoulder] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Shoulder" EXACT [] xref: EHDAA:4180 xref: EHDAA:6228 xref: FMA:25202 xref: GAID:60 xref: HOG:0000342 xref: MA:0000038 xref: ncithesaurus:Shoulder xref: OpenCyc:Mx4rvViCM5wpEbGdrcN5Y29ycA is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0001421 ! pectoral girdle [Term] id: UBERON:0001468 name: intervertebral symphysis alt_id: UBERON:FMA_25511-MA_0001514 comment: This class was created automatically from a combination of ontologies synonym: "Intervertebral symphysis" EXACT [] synonym: "Joint of vertebral body" EXACT [] synonym: "joint of vertebral body" EXACT [] xref: FMA:25511 xref: MA:0001514 is_a: UBERON:0002216 ! symphysis relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0001469 name: sternoclavicular joint alt_id: UBERON:FMA_25883-MA_0001507 def: "." [Wikipedia:Sternoclavicular_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sternoclavicular joint" EXACT [] xref: FMA:25883 xref: GAID:270 xref: MA:0001507 xref: ncithesaurus:Sternoclavicular_Joint xref: OpenCyc:Mx4rv_eLJZwpEbGdrcN5Y29ycA is_a: UBERON:0000982 ! joint is_a: UBERON:0003657 ! implied link automatically realized ! limb joint [Term] id: UBERON:0001470 name: glenohumeral joint alt_id: UBERON:FMA_25912-MA_0000459 def: "." [Wikipedia:Glenohumeral_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Glenohumeral joint" EXACT [] synonym: "Humeral joint" EXACT [] synonym: "humeral joint" EXACT [] synonym: "Shoulder joint" EXACT [] synonym: "shoulder joint" EXACT [] xref: FMA:25912 xref: GAID:269 xref: HOG:0001002 xref: MA:0000459 xref: ncithesaurus:Shoulder_Joint is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003839 ! implied link automatically realized ! forelimb joint intersection_of: UBERON:0000982 ! joint intersection_of: part_of UBERON:0001467 ! shoulder relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001471 name: skin of prepuce of penis alt_id: UBERON:FMA_27648-MA_0001744 comment: This class was created automatically from a combination of ontologies synonym: "Foreskin of penis" EXACT [] synonym: "foreskin of penis" EXACT [] synonym: "penis foreskin" EXACT [] synonym: "Preputial skin" EXACT [] synonym: "preputial skin" EXACT [] synonym: "Skin of prepuce of penis" EXACT [] xref: FMA:27648 xref: HOG:0001342 xref: MA:0001744 is_a: UBERON:0000014 ! zone of skin is_a: UBERON:0001331 ! implied link automatically realized ! skin of penis intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001332 ! prepuce of penis [Term] id: UBERON:0001472 name: vaginal venous plexus alt_id: UBERON:FMA_29713-MA_0002257 def: "." [Wikipedia:Vaginal_venous_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Vaginal venous plexus" EXACT [] synonym: "venous vaginal plexus" EXACT [] xref: FMA:29713 xref: MA:0002257 is_a: UBERON:0001593 ! venous plexus intersection_of: UBERON:0001593 ! venous plexus intersection_of: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0001473 name: lymphatic vessel alt_id: UBERON:FMA_30315-FMA_5034-MA_0000138-MA_0000139-MIAA_0000197-XAO_0000375-ZFA_0005105 def: "Segment of lymphatic tree organ, the wall and lumen of which are continuous with those of the veins, directly or indirectly; together with other lymphatic vessels and lymph nodes, it constitutes the lymphatic tree organ. Examples: bronchomediastinal lymph duct, thoracic duct. // A vessel that contains or conveys lymph. // A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [BTO:0000752, Wikipedia:Lymphatic_vessel, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lymph vessel" EXACT [] synonym: "lymph vessel" EXACT [] synonym: "lymphatic system" RELATED [] synonym: "Lymphatic vessel" EXACT [] xref: BTO:0000752 xref: EFO:0000873 xref: EHDAA:8677 xref: FMA:30315 xref: HOG:0001249 xref: MA:0000138 xref: MAT:0000197 xref: MAT:0000443 xref: ncithesaurus:Lymphatic_Vessel xref: TAO:0005105 xref: XAO:0000375 xref: ZFA:0005105 is_a: UBERON:0000055 ! vessel disjoint_from: UBERON:0001981 ! blood vessel relationship: has_part UBERON:0002391 ! lymph relationship: part_of UBERON:0002049 ! vasculature relationship: part_of UBERON:0002465 ! lymphoid system [Term] id: UBERON:0001474 name: bone alt_id: UBERON:FMA_30317-MA_0001459-MIAA_0000299-XAO_0000169-ZFA_0001514 def: "The hard form of connective tissue that constitutes the majority of the skeleton. // Portion of tissue which is calcified connective tissue making up the structural elements of the skeletal system. Organ with cavitated organ parts, which primarily consists of compact (cortical) and cancellous bone, which surround bone marrow cavities; together with other bones, cartilages and joints, it constitutes the skeletal system. Examples: femur, sternum, maxilla, vertebra, talus[FMA]" [BTO:0000140, FMA:5018, Wikipedia:Bone, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "bone organ" EXACT [] xref: AAO:0000047 xref: BTO:0000140 xref: EFO:0000298 xref: ENVO:00002039 xref: FMA:5018 xref: GAID:92 xref: galen:Bone xref: HOG:0001190 xref: MA:0001459 xref: MAT:0000299 xref: MIAA:0000299 xref: ncithesaurus:Bone xref: OpenCyc:Mx4rvViDlpwpEbGdrcN5Y29ycA xref: OpenCyc:Mx4rvVkCG5wpEbGdrcN5Y29ycA xref: TAO:0001514 xref: XAO:0000169 xref: ZFA:0001514 is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0001434 ! skeleton [Term] id: UBERON:0001475 name: ligament alt_id: UBERON:FMA_30319-FMA_76821-MA_0000113-MIAA_0000113 comment: made obsolete as it incorrectly grouped classes is_obsolete: true consider: UBERON:0000211 consider: UBERON:0002360 [Term] id: UBERON:0001476 name: deltoid alt_id: UBERON:FMA_32521-MA_0002286 def: "Intrinsic muscle of shoulder which attaches to the spine of scapula, clavicle and humerus." [Wikipedia:Deltoid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Deltoid" EXACT [] xref: EFO:0001412 xref: FMA:32521 xref: HOG:0000846 xref: MA:0002286 xref: ncithesaurus:Deltoid xref: OpenCyc:Mx4rvVjdc5wpEbGdrcN5Y29ycA is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001477 name: infraspinatus muscle alt_id: UBERON:FMA_32546-MA_0002323 def: "." [Wikipedia:Infraspinatus_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Infraspinatus" EXACT [] synonym: "infraspinatus" EXACT [] synonym: "Infraspinatus muscle" EXACT [] xref: EHDAA:8305 xref: FMA:32546 xref: HOG:0000921 xref: MA:0002323 xref: ncithesaurus:Infraspinatus is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001478 name: teres major alt_id: UBERON:FMA_32549-MA_0002392 def: "." [Wikipedia:Teres_major] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Teres major" EXACT [] synonym: "Teres major muscle" EXACT [] synonym: "teres major muscle" EXACT [] xref: EHDAA:8321 xref: FMA:32549 xref: HOG:0000750 xref: MA:0002392 xref: ncithesaurus:Teres_Major_Muscle is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0001479 name: sesamoid bone alt_id: UBERON:FMA_32672-MA_0001375 def: "." [Wikipedia:Sesamoid_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sesamoid bone" EXACT [] xref: FMA:32672 xref: GAID:210 xref: MA:0001375 xref: ncithesaurus:Sesamoid_Bone is_a: UBERON:0002428 ! limb bone [Term] id: UBERON:0001480 name: proximal carpal bone alt_id: UBERON:FMA_33302-MA_0002557 comment: This class was created automatically from a combination of ontologies synonym: "Proximal carpal bone" EXACT [] xref: FMA:33302 xref: MA:0002557 is_a: UBERON:0001435 ! carpal bone [Term] id: UBERON:0001481 name: distal carpal bone alt_id: UBERON:FMA_33303-MA_0002558 comment: This class was created automatically from a combination of ontologies synonym: "Distal carpal bone" EXACT [] xref: FMA:33303 xref: MA:0002558 is_a: UBERON:0001435 ! carpal bone [Term] id: UBERON:0001482 name: muscle of shoulder alt_id: UBERON:FMA_33531-MA_0000633 comment: This class was created automatically from a combination of ontologies synonym: "Muscle of shoulder" EXACT [] synonym: "Shoulder muscle" EXACT [] synonym: "shoulder muscle" EXACT [] xref: FMA:33531 xref: MA:0000633 is_a: UBERON:0002426 ! implied link automatically realized ! chest muscle is_a: UBERON:0003662 ! implied link automatically realized ! forelimb muscle intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001467 ! shoulder relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001483 name: skin of shoulder alt_id: UBERON:FMA_34830-MA_0000635 comment: This class was created automatically from a combination of ontologies synonym: "Shoulder skin" EXACT [] synonym: "shoulder skin" EXACT [] synonym: "Skin of shoulder" EXACT [] xref: FMA:34830 xref: MA:0000635 is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0001868 ! implied link automatically realized ! skin of chest intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001467 ! shoulder relationship: part_of UBERON:0001419 ! skin of limb relationship: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0001484 name: articular capsule alt_id: UBERON:FMA_34836-MA_0001519 def: "." [Wikipedia:Articular_capsule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Articular capsule" EXACT [] synonym: "Fibrous capsule of joint" EXACT [] synonym: "fibrous capsule of joint" EXACT [] synonym: "Joint capsule" EXACT [] synonym: "joint capsule" EXACT [] synonym: "joint fibrous capsule" EXACT [] xref: FMA:34836 xref: GAID:263 xref: galen:JointCapsule xref: MA:0001519 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0002217 ! synovial joint [Term] id: UBERON:0001485 name: knee joint alt_id: UBERON:FMA_35175-MA_0000471 def: "." [Wikipedia:Knee_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Knee joint" EXACT [] xref: EFO:0001957 xref: FMA:35175 xref: GAID:114 xref: galen:KneeJoint xref: HOG:0001003 xref: MA:0000471 xref: ncithesaurus:Knee_Joint is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003840 ! implied link automatically realized ! hindlimb joint intersection_of: UBERON:0000982 ! joint intersection_of: part_of UBERON:0001465 ! knee relationship: part_of UBERON:0001465 ! knee [Term] id: UBERON:0001486 name: hip joint alt_id: UBERON:FMA_35178-MA_0000470 def: "." [Wikipedia:Hip_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Articulatio coxofemoralis" EXACT [] synonym: "articulatio coxofemoralis" EXACT [] synonym: "Hip joint" EXACT [] xref: BTO:0001502 xref: FMA:35178 xref: GAID:262 xref: galen:HipJoint xref: HOG:0001001 xref: MA:0000470 xref: ncithesaurus:Hip_Joint is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003840 ! implied link automatically realized ! hindlimb joint intersection_of: UBERON:0000982 ! joint intersection_of: part_of UBERON:0001464 ! hip relationship: part_of UBERON:0001464 ! hip [Term] id: UBERON:0001487 name: joint of foot alt_id: UBERON:FMA_35194-MA_0000464 comment: This class was created automatically from a combination of ontologies synonym: "Foot joint" EXACT [] synonym: "foot joint" EXACT [] synonym: "Joint of foot" EXACT [] xref: FMA:35194 xref: FMA:71349 xref: GAID:256 xref: MA:0000464 is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003840 ! implied link automatically realized ! hindlimb joint is_a: UBERON:0003841 ! implied link automatically realized ! autopod joint intersection_of: UBERON:0000982 ! joint intersection_of: part_of UBERON:0002387 ! foot relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0001488 name: ankle joint alt_id: UBERON:FMA_35195-MA_0000463 def: "." [Wikipedia:Ankle_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ankle joint" EXACT [] synonym: "Talocrural joint" EXACT [] synonym: "talocrural joint" EXACT [] xref: EFO:0001409 xref: FMA:35195 xref: GAID:257 xref: galen:AnkleJoint xref: MA:0000463 xref: ncithesaurus:Ankle_Joint is_a: UBERON:0001487 ! joint of foot intersection_of: UBERON:0000982 ! joint intersection_of: part_of UBERON:0002388 ! ankle relationship: part_of UBERON:0002388 ! ankle [Term] id: UBERON:0001489 name: joint of hand alt_id: UBERON:FMA_35245-MA_0000452 comment: This class was created automatically from a combination of ontologies synonym: "Hand joint" EXACT [] synonym: "hand joint" EXACT [] synonym: "Joint of hand" EXACT [] xref: FMA:35245 xref: FMA:71345 xref: MA:0000452 is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003839 ! implied link automatically realized ! forelimb joint is_a: UBERON:0003841 ! implied link automatically realized ! autopod joint intersection_of: UBERON:0000982 ! joint intersection_of: part_of UBERON:0002398 ! hand relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0001490 name: elbow joint alt_id: UBERON:FMA_35289-MA_0000451 def: "." [Wikipedia:Elbow_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Elbow joint" EXACT [] xref: FMA:35289 xref: GAID:253 xref: galen:ElbowJoint xref: HOG:0000997 xref: MA:0000451 xref: ncithesaurus:Elbow_Joint is_a: UBERON:0002217 ! synovial joint is_a: UBERON:0003839 ! implied link automatically realized ! forelimb joint intersection_of: UBERON:0000982 ! joint intersection_of: part_of UBERON:0001461 ! elbow relationship: part_of UBERON:0001461 ! elbow [Term] id: UBERON:0001491 name: wrist joint alt_id: UBERON:FMA_35291-MA_0000460 def: "." [Wikipedia:Wrist_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Joint of wrist" EXACT [] synonym: "joint of wrist" EXACT [] synonym: "Radiocarpal joint" EXACT [] synonym: "radiocarpal joint" EXACT [] synonym: "Wrist joint" EXACT [] xref: FMA:35291 xref: GAID:274 xref: MA:0000460 xref: ncithesaurus:Wrist_Joint xref: OpenCyc:Mx4rvZD2PJwpEbGdrcN5Y29ycA is_a: UBERON:0001489 ! joint of hand intersection_of: UBERON:0000982 ! joint intersection_of: part_of UBERON:0001462 ! wrist relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001492 name: radial nerve alt_id: UBERON:FMA_37069-MA_0001171 def: "." [Wikipedia:Radial_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Radial nerve" EXACT [] xref: EHDAA:5650 xref: FMA:37069 xref: GAID:845 xref: HOG:0000896 xref: MA:0001171 xref: ncithesaurus:Radial_Nerve xref: OpenCyc:Mx4rvfk7E5wpEbGdrcN5Y29ycA is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve relationship: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001814 ! brachial nerve plexus [Term] id: UBERON:0001493 name: axillary nerve alt_id: UBERON:FMA_37072-MA_0001166 def: "." [Wikipedia:Axillary_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Axillary nerve" EXACT [] synonym: "Circumflex humeral nerve" EXACT [] synonym: "circumflex humeral nerve" EXACT [] xref: FMA:37072 xref: MA:0001166 xref: ncithesaurus:Axillary_Nerve xref: OpenCyc:Mx4rvgwMfpwpEbGdrcN5Y29ycA is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve is_a: UBERON:0003436 ! implied link automatically realized ! shoulder nerve relationship: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001467 ! shoulder relationship: part_of UBERON:0001814 ! brachial nerve plexus [Term] id: UBERON:0001494 name: ulnar nerve alt_id: UBERON:FMA_37319-MA_0001174 def: "." [Wikipedia:Ulnar_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ulnar nerve" EXACT [] xref: FMA:37319 xref: GAID:846 xref: HOG:0000922 xref: MA:0001174 xref: ncithesaurus:Ulnar_Nerve is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve relationship: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001814 ! brachial nerve plexus [Term] id: UBERON:0001495 name: pectoral muscle alt_id: UBERON:FMA_37349-MA_0002423 def: "." [Wikipedia:Pectoral_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Muscle of pectoral part of chest" EXACT [] synonym: "muscle of pectoral part of chest" EXACT [] synonym: "Muscle of pectoral region" EXACT [] synonym: "muscle of pectoral region" EXACT [] synonym: "Pectoral muscle" EXACT [] synonym: "pectoralis muscle" EXACT [] xref: BTO:0000023 xref: FMA:37349 xref: GAID:153 xref: MA:0002423 xref: ncithesaurus:Pectoralis_Muscle is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001496 name: ascending aorta alt_id: UBERON:FMA_3736-MA_0002570 def: "a portion of the aorta commencing at the upper part of the base of the left ventricle, on a level with the lower border of the third costal cartilage behind the left half of the sternum; it passes obliquely upward, forward, and to the right, in the direction of the heart’s axis, as high as the upper border of the second right costal cartilage, describing a slight curve in its course, and being situated, about 6 cm behind the posterior surface of the sternum. The total length is about 5 cm in length [Wikipedia]" [Wikipedia:Ascending_aorta] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ascending aorta" EXACT [] synonym: "Pars ascendens aortae" EXACT [] synonym: "pars ascendens aortae" EXACT [] xref: FMA:3736 xref: MA:0002570 xref: ncithesaurus:Ascending_Aorta is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001515 ! thoracic aorta [Term] id: UBERON:0001497 name: muscle of pelvic girdle alt_id: UBERON:FMA_37367-MA_0000537 comment: This class was created automatically from a combination of ontologies synonym: "Muscle of pelvic girdle" EXACT [] synonym: "Pelvic girdle muscle" EXACT [] synonym: "pelvic girdle muscle" EXACT [] xref: AAO:0000427 xref: FMA:37367 xref: MA:0000537 is_a: UBERON:0001325 ! muscle of pelvis is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001271 ! pelvic girdle [Term] id: UBERON:0001498 name: muscle of foot alt_id: UBERON:FMA_37369-MA_0000652 comment: This class was created automatically from a combination of ontologies synonym: "Foot muscle" EXACT [] synonym: "foot muscle" EXACT [] synonym: "Muscle of foot" EXACT [] xref: BTO:0000477 xref: FMA:37369 xref: MA:0000652 is_a: UBERON:0003663 ! implied link automatically realized ! hindlimb muscle intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002387 ! foot relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0001499 name: muscle of arm alt_id: UBERON:FMA_37370-MA_0000594 comment: This class was created automatically from a combination of ontologies synonym: "Arm muscle" EXACT [] synonym: "arm muscle" EXACT [] synonym: "Muscle of arm" EXACT [] xref: FMA:37370 xref: MA:0000594 is_a: UBERON:0003662 ! implied link automatically realized ! forelimb muscle intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0001500 name: muscle of hand alt_id: UBERON:FMA_37372-MA_0000628 comment: This class was created automatically from a combination of ontologies synonym: "Hand muscle" EXACT [] synonym: "hand muscle" EXACT [] synonym: "Muscle of hand" EXACT [] xref: FMA:37372 xref: MA:0000628 is_a: UBERON:0001499 ! implied link automatically realized ! muscle of arm is_a: UBERON:0001630 ! muscle organ intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002398 ! hand relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0001501 name: lumbrical of hand alt_id: UBERON:FMA_37385-MA_0002316 comment: This class was created automatically from a combination of ontologies synonym: "Hand lumbrical" EXACT [] synonym: "hand lumbrical" EXACT [] synonym: "hand lumbrical muscle" EXACT [] synonym: "Lumbrical of hand" EXACT [] xref: FMA:37385 xref: MA:0002316 is_a: UBERON:0001500 ! muscle of hand [Term] id: UBERON:0001502 name: interosseous muscle of hand alt_id: UBERON:FMA_37417-MA_0002313 comment: This class was created automatically from a combination of ontologies synonym: "hand interosseous muscle" EXACT [] synonym: "Interosseous muscle of hand" EXACT [] xref: FMA:37417 xref: MA:0002313 xref: ncithesaurus:Hand_Interosseous_Muscle is_a: UBERON:0001500 ! muscle of hand [Term] id: UBERON:0001503 name: dorsal interosseous of hand alt_id: UBERON:FMA_37418-MA_0002314 comment: This class was created automatically from a combination of ontologies synonym: "dorsal hand interosseus muscle" EXACT [] synonym: "Dorsal interosseous of hand" EXACT [] xref: FMA:37418 xref: MA:0002314 is_a: UBERON:0001502 ! interosseous muscle of hand [Term] id: UBERON:0001504 name: lumbrical of foot alt_id: UBERON:FMA_37453-MA_0002305 comment: This class was created automatically from a combination of ontologies synonym: "Foot lumbrical" EXACT [] synonym: "foot lumbrical" EXACT [] synonym: "foot lumbrical muscle" EXACT [] synonym: "Lumbrical of foot" EXACT [] xref: FMA:37453 xref: MA:0002305 is_a: UBERON:0001498 ! muscle of foot [Term] id: UBERON:0001505 name: coracobrachialis alt_id: UBERON:FMA_37664-MA_0002282 def: "." [Wikipedia:Coracobrachialis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "coracobrachial" EXACT [] synonym: "Coracobrachialis" EXACT [] synonym: "Pirogoff's aponeurosis" EXACT [] synonym: "pirogoff's aponeurosis" EXACT [] xref: FMA:37664 xref: MA:0002282 xref: ncithesaurus:Coracobrachialis is_a: UBERON:0001499 ! muscle of arm relationship: part_of UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0001506 name: brachialis alt_id: UBERON:FMA_37667-MA_0002271 def: "." [Wikipedia:Brachialis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Brachialis" EXACT [] synonym: "Casserio's muscle" EXACT [] synonym: "casserio's muscle" EXACT [] xref: EHDAA:8281 xref: FMA:37667 xref: HOG:0001026 xref: MA:0002271 xref: ncithesaurus:Brachialis is_a: UBERON:0001499 ! muscle of arm [Term] id: UBERON:0001507 name: biceps brachii alt_id: UBERON:FMA_37670-MA_0002269 def: "." [Wikipedia:Biceps_brachii] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Biceps brachii" EXACT [] xref: BTO:0003419 xref: FMA:37670 xref: MA:0002269 is_a: UBERON:0001499 ! muscle of arm relationship: part_of UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0001508 name: arch of aorta alt_id: UBERON:FMA_3768-MA_0000475-MIAA_0000059 def: "." [Wikipedia:Arch_of_aorta] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Aortic arch" EXACT [] synonym: "aortic arch" RELATED [] synonym: "Arch of aorta" EXACT [] xref: EFO:0002526 xref: EHDAA:571 xref: EHDAA:7327 xref: FMA:3768 xref: HOG:0000122 xref: MA:0000475 xref: MAT:0000059 xref: MIAA:0000059 xref: ncithesaurus:Aortic_Arch xref: ZFA:0005004 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001515 ! thoracic aorta [Term] id: UBERON:0001509 name: triceps brachii alt_id: UBERON:FMA_37688-MA_0002399 def: "." [Wikipedia:Triceps_brachii] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Triceps brachii" EXACT [] xref: FMA:37688 xref: MA:0002399 is_a: UBERON:0001499 ! muscle of arm [Term] id: UBERON:0001510 name: skin of knee alt_id: UBERON:FMA_37800-MA_0000668 comment: This class was created automatically from a combination of ontologies synonym: "Knee skin" EXACT [] synonym: "knee skin" EXACT [] synonym: "Skin of knee" EXACT [] xref: FMA:37800 xref: MA:0000668 xref: ncithesaurus:Knee_Skin is_a: UBERON:0001419 ! skin of limb intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001465 ! knee relationship: part_of UBERON:0001465 ! knee [Term] id: UBERON:0001511 name: skin of leg alt_id: UBERON:FMA_37828-MA_0000674 comment: This class was created automatically from a combination of ontologies synonym: "Leg skin" EXACT [] synonym: "leg skin" EXACT [] synonym: "Skin of leg" EXACT [] xref: FMA:37828 xref: MA:0000674 xref: ncithesaurus:Leg_Skin is_a: UBERON:0001419 ! skin of limb intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000978 ! leg relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001512 name: skin of ankle alt_id: UBERON:FMA_37831-MA_0000641 comment: This class was created automatically from a combination of ontologies synonym: "Ankle skin" EXACT [] synonym: "ankle skin" EXACT [] synonym: "Skin of ankle" EXACT [] xref: FMA:37831 xref: MA:0000641 xref: ncithesaurus:Ankle_Skin is_a: UBERON:0001419 ! skin of limb intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002388 ! ankle relationship: part_of UBERON:0002388 ! ankle [Term] id: UBERON:0001513 name: skin of foot alt_id: UBERON:FMA_37834-MA_0000654 comment: This class was created automatically from a combination of ontologies synonym: "Foot skin" EXACT [] synonym: "foot skin" EXACT [] synonym: "Skin of foot" EXACT [] xref: FMA:37834 xref: MA:0000654 xref: ncithesaurus:Foot_Skin is_a: UBERON:0001419 ! skin of limb intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002387 ! foot relationship: part_of UBERON:0002387 ! foot [Term] id: UBERON:0001514 name: descending aorta alt_id: UBERON:FMA_3784-MA_0002571 def: "." [Wikipedia:Descending_aorta] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Descending aorta" EXACT [] synonym: "Pars descendens aortae" EXACT [] synonym: "pars descendens aortae" EXACT [] xref: FMA:3784 xref: MA:0002571 xref: ncithesaurus:Descending_Aorta xref: OpenCyc:Mx4rv4EE35wpEbGdrcN5Y29ycA is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0001515 name: thoracic aorta alt_id: UBERON:FMA_3786-MA_0002569 def: "." [Wikipedia:Thoracic_aorta] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Thoracic aorta" EXACT [] synonym: "Thoracic part of aorta" EXACT [] synonym: "thoracic part of aorta" EXACT [] xref: EFO:0002525 xref: FMA:3786 xref: GAID:471 xref: MA:0002569 xref: ncithesaurus:Thoracic_Aorta xref: OpenCyc:Mx4rveb9TpwpEbGdrcN5Y29ycA is_a: UBERON:0000947 ! aorta is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel intersection_of: UBERON:0000947 ! aorta intersection_of: part_of UBERON:0000915 ! thorax [Term] id: UBERON:0001516 name: abdominal aorta alt_id: UBERON:FMA_3789-MA_0000474 def: "." [Wikipedia:Abdominal_aorta] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Abdominal aorta" EXACT [] synonym: "Abdominal part of aorta" EXACT [] synonym: "abdominal part of aorta" EXACT [] synonym: "Descending abdominal aorta" EXACT [] synonym: "descending abdominal aorta" EXACT [] synonym: "Pars abdominalis aortae" EXACT [] synonym: "pars abdominalis aortae" EXACT [] xref: BTO:0002976 xref: EFO:0002524 xref: FMA:3789 xref: GAID:470 xref: galen:AbdominalAorta xref: MA:0000474 xref: ncithesaurus:Abdominal_Aorta xref: OpenCyc:Mx4rvYhWCZwpEbGdrcN5Y29ycA is_a: UBERON:0000947 ! aorta is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel intersection_of: UBERON:0000947 ! aorta intersection_of: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0001514 ! descending aorta [Term] id: UBERON:0001517 name: skin of elbow alt_id: UBERON:0003399 alt_id: UBERON:FMA_38250-MA_0000610 comment: This class was created automatically from a combination of ontologies synonym: "elbow skin" EXACT [] xref: EMAPA:18051 xref: FMA:38250 xref: MA:0000610 xref: ncithesaurus:Elbow_Skin is_a: UBERON:0002427 ! arm skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001461 ! elbow relationship: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001461 ! elbow [Term] id: UBERON:0001518 name: skin of wrist alt_id: UBERON:FMA_38280-MA_0000638 comment: This class was created automatically from a combination of ontologies synonym: "Skin of wrist" EXACT [] synonym: "Wrist skin" EXACT [] synonym: "wrist skin" EXACT [] xref: FMA:38280 xref: MA:0000638 xref: ncithesaurus:Wrist_Skin is_a: UBERON:0001419 ! skin of limb intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001462 ! wrist relationship: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0001519 name: skin of hand alt_id: UBERON:FMA_38295-MA_0000630 comment: This class was created automatically from a combination of ontologies synonym: "Hand skin" EXACT [] synonym: "hand skin" EXACT [] synonym: "Skin of hand" EXACT [] xref: FMA:38295 xref: MA:0000630 xref: ncithesaurus:Hand_Skin is_a: UBERON:0001419 ! skin of limb intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0002398 ! hand relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0001520 name: pronator teres alt_id: UBERON:FMA_38450-MA_0002357 def: "." [Wikipedia:Pronator_teres] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pronator teres" EXACT [] xref: FMA:38450 xref: MA:0002357 xref: ncithesaurus:Pronator_Teres is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001521 name: flexor carpi radialis alt_id: UBERON:FMA_38459-MA_0002297 def: "." [Wikipedia:Flexor_carpi_radialis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Flexor carpi radialis" EXACT [] xref: FMA:38459 xref: MA:0002297 xref: ncithesaurus:Flexor_Carpi_Radialis is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001522 name: flexor carpi ulnaris alt_id: UBERON:FMA_38465-MA_0002298 def: "." [Wikipedia:Flexor_carpi_ulnaris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Flexor carpi ulnaris" EXACT [] xref: FMA:38465 xref: MA:0002298 xref: ncithesaurus:Flexor_Carpi_Ulnaris is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001523 name: flexor digitorum profundus alt_id: UBERON:FMA_38478-MA_0002300 def: "." [Wikipedia:Flexor_digitorum_profundus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Flexor digitorum profundus" EXACT [] xref: BTO:0001246 xref: FMA:38478 xref: MA:0002300 xref: ncithesaurus:Flexor_Digitorum_Profundus is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001524 name: extensor carpi radialis longus alt_id: UBERON:FMA_38494-MA_0002291 def: "." [Wikipedia:Extensor_carpi_radialis_longus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Extensor carpi radialis longus" EXACT [] xref: FMA:38494 xref: MA:0002291 xref: ncithesaurus:Extensor_Carpi_Radialis_Longus is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001525 name: extensor carpi radialis brevis alt_id: UBERON:FMA_38497-MA_0002290 def: "." [Wikipedia:Extensor_carpi_radialis_brevis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Extensor carpi radialis brevis" EXACT [] xref: FMA:38497 xref: MA:0002290 xref: ncithesaurus:Extensor_Carpi_Radialis_Brevis is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001526 name: extensor carpi ulnaris alt_id: UBERON:FMA_38506-MA_0002292 def: "." [Wikipedia:Extensor_carpi_ulnaris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Extensor carpi ulnaris" EXACT [] xref: FMA:38506 xref: MA:0002292 xref: ncithesaurus:Extensor_Carpi_Ulnaris is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0000475 ! organism subdivision [Term] id: UBERON:0001527 name: abductor pollicis longus alt_id: UBERON:FMA_38515-MA_0002266 def: "." [Wikipedia:Abductor_pollicis_longus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Abductor pollicis longus" EXACT [] xref: FMA:38515 xref: MA:0002266 xref: ncithesaurus:Abductor_Pollicis_Longus is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001528 name: radio-ulnar joint alt_id: UBERON:FMA_38863-MA_0000462 def: "." [Wikipedia:Radio-ulnar_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Radio-ulnar joint" EXACT [] synonym: "Radioulnar joint" EXACT [] synonym: "radioulnar joint" EXACT [] xref: FMA:38863 xref: MA:0000462 is_a: UBERON:0001491 ! wrist joint [Term] id: UBERON:0001529 name: brachiocephalic artery alt_id: UBERON:FMA_3932-MA_0001922 def: "." [Wikipedia:Brachiocephalic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Brachiocephalic artery" EXACT [] synonym: "Brachiocephalic trunk" EXACT [] synonym: "brachiocephalic trunk" EXACT [] synonym: "Innominate artery" EXACT [] synonym: "innominate artery" RELATED [] xref: EFO:0002550 xref: FMA:3932 xref: GAID:476 xref: MA:0001922 xref: ncithesaurus:Innominate_Artery xref: OpenCyc:Mx4rv9mMTpwpEbGdrcN5Y29ycA is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001530 name: common carotid artery alt_id: UBERON:FMA_3939-ZFA_0000097 def: "Artery originating at the junction of the first two aortic arches and supplying the anterior brain. Kimmel et al, 1995." [Wikipedia:Common_carotid_artery, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Carotid artery" EXACT [] synonym: "carotid artery" EXACT [] synonym: "Common carotid artery" EXACT [] synonym: "Trunk of common carotid tree" EXACT [] synonym: "trunk of common carotid tree" EXACT [] xref: BTO:0000168 xref: EFO:0000818 xref: EHDAA:6385 xref: EHDAA:7331 xref: FMA:3939 xref: GAID:478 xref: GAID:479 xref: galen:CarotidArtery xref: HOG:0000266 xref: HOG:0000272 xref: MA:0001926 xref: MAT:0000501 xref: ncithesaurus:Carotid_Artery xref: OpenCyc:Mx4rvg7rcJwpEbGdrcN5Y29ycA xref: TAO:0000097 xref: ZFA:0000097 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001531 name: right common carotid artery alt_id: UBERON:FMA_3941-MA_0001928 def: "." [Wikipedia:Right_common_carotid_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Right common carotid artery" EXACT [] synonym: "Trunk of right common carotid tree" EXACT [] synonym: "trunk of right common carotid tree" EXACT [] xref: FMA:3941 xref: MA:0001928 xref: ncithesaurus:Right_Common_Carotid_Artery xref: OpenCyc:Mx4rtW9-AqgEEdudWQACs5b6Bw is_a: UBERON:0001530 ! common carotid artery [Term] id: UBERON:0001532 name: internal carotid artery alt_id: UBERON:FMA_3947-MA_0001930-XAO_0000366-ZFA_0005081 def: "." [Wikipedia:Internal_carotid_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ICA" RELATED [] synonym: "Internal carotid artery" EXACT [] xref: EFO:0001952 xref: EHDAA:408 xref: EHDAA:6389 xref: FMA:3947 xref: GAID:481 xref: HOG:0000267 xref: MA:0001930 xref: ncithesaurus:Internal_Carotid_Artery xref: OpenCyc:Mx4rvYx8KZwpEbGdrcN5Y29ycA xref: TAO:0005081 xref: XAO:0000366 xref: ZFA:0005081 is_a: UBERON:0001637 ! artery is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel relationship: part_of UBERON:0001530 ! common carotid artery [Term] id: UBERON:0001533 name: subclavian artery alt_id: UBERON:FMA_3951-MA_0002045-ZFA_0005086 def: "The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch. Kimmel et al. 1993" [Wikipedia:Subclavian_artery, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Arterial tree of upper limb" EXACT [] synonym: "arterial tree of upper limb" EXACT [] synonym: "PA" RELATED [] synonym: "pectoral artery" EXACT [] synonym: "Subclavian arterial tree" EXACT [] synonym: "subclavian arterial tree" EXACT [] synonym: "Subclavian artery" EXACT [] xref: EHDAA:4357 xref: FMA:3951 xref: GAID:511 xref: MA:0002045 xref: ncithesaurus:Subclavian_Artery xref: TAO:0005086 xref: ZFA:0005086 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001534 name: right subclavian artery alt_id: UBERON:FMA_3953-MA_0002047 def: "." [Wikipedia:Right_subclavian_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Right subclavian artery" EXACT [] xref: FMA:3953 xref: MA:0002047 xref: ncithesaurus:Right_Subclavian_Artery xref: OpenCyc:Mx4rtW7hwqgEEdudWQACs5b6Bw is_a: UBERON:0001533 ! subclavian artery [Term] id: UBERON:0001535 name: vertebral artery alt_id: UBERON:FMA_3956-MA_0002077-ZFA_0005033 def: "." [Wikipedia:Vertebral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Vertebral artery" EXACT [] xref: EHDAA:5328 xref: FMA:3956 xref: GAID:518 xref: HOG:0000263 xref: MA:0002077 xref: ncithesaurus:Vertebral_Artery xref: OpenCyc:Mx4rvg_ir5wpEbGdrcN5Y29ycA xref: TAO:0005033 xref: ZFA:0005033 is_a: UBERON:0001637 ! artery is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel relationship: part_of UBERON:0001533 ! subclavian artery [Term] id: UBERON:0001536 name: left common carotid artery alt_id: UBERON:FMA_4058-MA_0001927 def: "." [Wikipedia:Left_common_carotid_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Left common carotid artery" EXACT [] synonym: "Trunk of left common carotid tree" EXACT [] synonym: "trunk of left common carotid tree" EXACT [] xref: FMA:4058 xref: MA:0001927 xref: ncithesaurus:Left_Common_Carotid_Artery xref: OpenCyc:Mx4rdz4xcLVIEduAAAAOpmP6tw is_a: UBERON:0001530 ! common carotid artery [Term] id: UBERON:0001537 name: anterior tibial artery alt_id: UBERON:FMA_43894-MA_0002574 def: "." [Wikipedia:Anterior_tibial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anterior tibial artery" EXACT [] xref: FMA:43894 xref: MA:0002574 xref: ncithesaurus:Anterior_Tibial_Artery xref: OpenCyc:Mx4rvaHcEZwpEbGdrcN5Y29ycA is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001538 name: posterior tibial artery alt_id: UBERON:FMA_43895-MA_0002575 def: "." [Wikipedia:Posterior_tibial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Posterior tibial artery" EXACT [] xref: FMA:43895 xref: MA:0002575 xref: ncithesaurus:Posterior_Tibial_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001539 name: dorsalis pedis artery alt_id: UBERON:FMA_43915-MA_0001942 def: "." [Wikipedia:Dorsalis_pedis_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Dorsal artery of foot" EXACT [] synonym: "dorsal artery of foot" EXACT [] synonym: "Dorsalis pedis artery" EXACT [] xref: FMA:43915 xref: galen:DorsalisPedisArtery xref: MA:0001942 xref: ncithesaurus:Dorsalis_Pedis_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001540 name: peroneal artery alt_id: UBERON:FMA_43921-MA_0002018 def: "." [Wikipedia:Peroneal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Fibular artery" EXACT [] synonym: "fibular artery" EXACT [] synonym: "Peroneal artery" EXACT [] xref: FMA:43921 xref: MA:0002018 xref: ncithesaurus:Peroneal_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel relationship: part_of UBERON:0001538 ! posterior tibial artery [Term] id: UBERON:0001541 name: medial plantar artery alt_id: UBERON:FMA_43925-MA_0001997 def: "." [Wikipedia:Medial_plantar_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Medial plantar artery" EXACT [] xref: FMA:43925 xref: MA:0001997 xref: ncithesaurus:Medial_Plantar_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel relationship: part_of UBERON:0001538 ! posterior tibial artery [Term] id: UBERON:0001542 name: inguinal lymph node alt_id: UBERON:FMA_44226-MA_0000737 def: "." [Wikipedia:Inguinal_lymph_node] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Inguinal lymph node" EXACT [] xref: FMA:44226 xref: MA:0000737 xref: ncithesaurus:Inguinal_Lymph_Node is_a: UBERON:0000029 ! lymph node [Term] id: UBERON:0001543 name: popliteal lymph node alt_id: UBERON:FMA_44227-MA_0000738 def: "." [Wikipedia:Popliteal_lymph_node] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Popliteal lymph node" EXACT [] xref: FMA:44227 xref: MA:0000738 xref: ncithesaurus:Popliteal_Lymph_Node is_a: UBERON:0000029 ! lymph node [Term] id: UBERON:0001544 name: popliteal vein alt_id: UBERON:FMA_44327-MA_0002197 def: "." [Wikipedia:Popliteal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Popliteal vein" EXACT [] xref: FMA:44327 xref: GAID:537 xref: MA:0002197 xref: ncithesaurus:Popliteal_Vein xref: OpenCyc:Mx4rv8Ch-JwpEbGdrcN5Y29ycA is_a: UBERON:0001638 ! vein is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel relationship: part_of UBERON:0001465 ! knee [Term] id: UBERON:0001545 name: anterior tibial vein alt_id: UBERON:FMA_44331-MA_0002244 def: "." [Wikipedia:Anterior_tibial_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anterior tibial vein" EXACT [] xref: FMA:44331 xref: galen:AnteriorTibialVein xref: MA:0002244 xref: ncithesaurus:Anterior_Tibial_Vein xref: OpenCyc:Mx4rvXYDl5wpEbGdrcN5Y29ycA is_a: UBERON:0001638 ! vein is_a: UBERON:0003503 ! implied link automatically realized ! leg blood vessel relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0001546 name: posterior tibial vein alt_id: UBERON:FMA_44332-MA_0002245 def: "." [Wikipedia:Posterior_tibial_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Posterior tibial vein" EXACT [] xref: FMA:44332 xref: MA:0002245 xref: ncithesaurus:Posterior_Tibial_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001547 name: small saphenous vein alt_id: UBERON:FMA_44333-MA_0002217 def: "." [Wikipedia:Small_saphenous_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lesser saphenous vein" EXACT [] synonym: "lesser saphenous vein" EXACT [] synonym: "Short saphenous vein" EXACT [] synonym: "short saphenous vein" EXACT [] synonym: "Small saphenous vein" EXACT [] xref: BTO:0003272 xref: FMA:44333 xref: galen:LesserSaphenousVein xref: MA:0002217 xref: ncithesaurus:Short_Saphenous_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001548 name: lateral marginal vein alt_id: UBERON:FMA_44359-MA_0002160 comment: This class was created automatically from a combination of ontologies synonym: "Lateral marginal vein" EXACT [] synonym: "Lateral marginal vein of foot" EXACT [] synonym: "lateral marginal vein of foot" EXACT [] synonym: "Vena marginalis lateralis" EXACT [] synonym: "vena marginalis lateralis" EXACT [] xref: FMA:44359 xref: MA:0002160 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001549 name: dorsal metatarsal vein alt_id: UBERON:FMA_44377-MA_0002105 comment: This class was created automatically from a combination of ontologies synonym: "Dorsal metatarsal vein" EXACT [] synonym: "Metatarsal vein" EXACT [] synonym: "metatarsal vein" EXACT [] xref: FMA:44377 xref: MA:0002105 xref: ncithesaurus:Dorsal_Metatarsal_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001550 name: medial marginal vein alt_id: UBERON:FMA_44420-MA_0002171 comment: This class was created automatically from a combination of ontologies synonym: "Medial marginal vein" EXACT [] synonym: "Medial marginal vein of foot" EXACT [] synonym: "medial marginal vein of foot" EXACT [] synonym: "Vena marginalis medialis" EXACT [] synonym: "vena marginalis medialis" EXACT [] xref: FMA:44420 xref: MA:0002171 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001551 name: sural vein alt_id: UBERON:FMA_44561-MA_0002231 comment: This class was created automatically from a combination of ontologies synonym: "Sural vein" EXACT [] xref: FMA:44561 xref: MA:0002231 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001552 name: arcuate artery alt_id: UBERON:FMA_44594-MA_0002583 def: "." [Wikipedia:Arcuate_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Arcuate artery" EXACT [] xref: FMA:44594 xref: MA:0002583 relationship: part_of UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0001553 name: medial tarsal artery alt_id: UBERON:FMA_44598-MA_0001998 comment: This class was created automatically from a combination of ontologies synonym: "Medial tarsal artery" EXACT [] xref: FMA:44598 xref: MA:0001998 xref: ncithesaurus:Medial_Tarsal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001554 name: skin of hip alt_id: UBERON:FMA_45282-MA_0000658 comment: This class was created automatically from a combination of ontologies synonym: "Hip skin" EXACT [] synonym: "hip skin" EXACT [] synonym: "Skin of hip" EXACT [] xref: FMA:45282 xref: MA:0000658 is_a: UBERON:0001419 ! skin of limb intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001464 ! hip relationship: part_of UBERON:0001464 ! hip [Term] id: UBERON:0001555 name: gut alt_id: UBERON:FMA_45615-MA_0000917-ZFA_0000112 def: "The alimentary or digestive tract, and associated organs. Extends from the beginning of the intestines to the anus" [Wikipedia:Gastrointestinal_tract, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "alimentary canal" RELATED [] synonym: "digestive tract" EXACT [] synonym: "excretory canal" RELATED [] synonym: "excretory tract " RELATED [] synonym: "Gut" EXACT [] synonym: "gut tube" RELATED [] synonym: "lower gastrointestinal tract" EXACT [] xref: BILA:0000083 xref: BTO:0000545 xref: EHDAA:518 xref: FBbt:00003125 xref: FMA:45615 xref: HOG:0000309 xref: MA:0000917 xref: ncithesaurus:Lower_Gastrointestinal_Tract xref: OpenCyc:Mx4rvVi0GpwpEbGdrcN5Y29ycA xref: TAO:0000112 xref: ZFA:0000112 is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0000925 ! endoderm relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0001007 ! digestive system [Term] id: UBERON:0001556 name: lower urinary tract alt_id: UBERON:FMA_45659-MA_0002636 def: "*Subdivision of urinary system which consists of the urinary bladder and the urethra." [] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lower urinary tract" EXACT [] xref: FMA:45659 xref: MA:0002636 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001008 ! urinary system [Term] id: UBERON:0001557 name: upper respiratory tract alt_id: UBERON:FMA_45661-MA_0000442 def: "Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx" [Wikipedia:Upper_respiratory_tract] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Upper respiratory tract" EXACT [] xref: FMA:45661 xref: HOG:0000406 xref: MA:0000442 xref: OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ is_a: UBERON:0000072 ! segment of respiratory tract [Term] id: UBERON:0001558 name: lower respiratory tract alt_id: UBERON:FMA_45662-MA_0000435 def: "Subdivision of respiratory system which consists of the tracheobronchial tree, right lung and left lung." [Wikipedia:Lower_respiratory_tract] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lower respiratory tract" EXACT [] xref: FMA:45662 xref: HOG:0000382 xref: MA:0000435 xref: OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g is_a: UBERON:0000072 ! segment of respiratory tract [Term] id: UBERON:0001559 name: head of organ alt_id: UBERON:FMA_45729-MA_0000581 comment: This class was created automatically from a combination of ontologies synonym: "Head of organ" EXACT [] synonym: "Organ head" EXACT [] synonym: "organ head" EXACT [] xref: FMA:45729 is_a: UBERON:0000481 ! multi-tissue structure [Term] id: UBERON:0001560 name: neck of organ alt_id: UBERON:FMA_45733-MA_0000589 comment: This class was created automatically from a combination of ontologies synonym: "Neck of organ" EXACT [] synonym: "Organ neck" EXACT [] synonym: "organ neck" EXACT [] xref: FMA:45733 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0001561 name: subcostal artery alt_id: UBERON:FMA_4613-MA_0002048 def: "." [Wikipedia:Subcostal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Subcostal artery" EXACT [] xref: FMA:4613 xref: MA:0002048 xref: ncithesaurus:Subcostal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001562 name: digastric alt_id: UBERON:FMA_46291-MA_0002288 def: "." [Wikipedia:Digastric] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Digastric" EXACT [] xref: FMA:46291 xref: MA:0002288 is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001563 name: longus capitis alt_id: UBERON:FMA_46308-MA_0002340 def: "." [Wikipedia:Longus_capitis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Longus capitis" EXACT [] xref: FMA:46308 xref: MA:0002340 xref: ncithesaurus:Longus_Capitis is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001564 name: mylohyoid alt_id: UBERON:FMA_46320-MA_0002344 def: "." [Wikipedia:Mylohyoid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Mylohyoid" EXACT [] xref: FMA:46320 xref: MA:0002344 xref: ncithesaurus:Mylohyoid is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001565 name: geniohyoid alt_id: UBERON:FMA_46325-MA_0002308 def: "." [Wikipedia:Geniohyoid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Geniohyoid" EXACT [] xref: FMA:46325 xref: MA:0002308 xref: ncithesaurus:Geniohyoid is_a: UBERON:0002377 ! muscle of neck [Term] id: UBERON:0001566 name: cricothyroid muscle alt_id: UBERON:FMA_46417-MA_0002284 def: "." [Wikipedia:Cricothyroid_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cricothyroid" EXACT [] synonym: "cricothyroid" EXACT [] synonym: "Cricothyroid muscle" EXACT [] xref: FMA:46417 xref: MA:0002284 xref: ncithesaurus:Cricothyroid_Muscle is_a: UBERON:0001568 ! muscle of larynx [Term] id: UBERON:0001567 name: cheek alt_id: UBERON:FMA_46476-MA_0002475 def: "." [Wikipedia:Cheek] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cheek" EXACT [] xref: BTO:0001754 xref: FMA:46476 xref: GAID:65 xref: galen:Cheek xref: MA:0002475 xref: ncithesaurus:Cheek xref: OpenCyc:Mx4rvVi5WZwpEbGdrcN5Y29ycA is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0001568 name: muscle of larynx alt_id: UBERON:FMA_46562-MA_0001768 comment: This class was created automatically from a combination of ontologies synonym: "Laryngeal muscle" EXACT [] synonym: "laryngeal muscle" EXACT [] synonym: "larynx muscle" EXACT [] synonym: "Muscle of larynx" EXACT [] xref: BTO:0001626 xref: FMA:46562 xref: GAID:144 xref: MA:0001768 xref: ncithesaurus:Laryngeal_Muscle is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002377 ! muscle of neck is_a: UBERON:0003831 ! implied link automatically realized ! respiratory system muscle intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0001569 name: constrictor muscle of pharynx alt_id: UBERON:FMA_46620-MA_0002278 def: "." [Wikipedia:Constrictor_muscle_of_pharynx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Constrictor muscle of pharynx" EXACT [] synonym: "Pharyngeal constrictor muscle" EXACT [] synonym: "pharyngeal constrictor muscle" EXACT [] xref: FMA:46620 xref: MA:0002278 is_a: UBERON:0000933 ! pharyngeal muscle [Term] id: UBERON:0001570 name: inferior pharyngeal constrictor alt_id: UBERON:FMA_46623-MA_0002279 def: "." [Wikipedia:Inferior_pharyngeal_constrictor] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "constrictor muscle of pharynx inferior" EXACT [] synonym: "Inferior constrictor" EXACT [] synonym: "inferior constrictor" EXACT [] synonym: "Inferior constrictor of pharynx" EXACT [] synonym: "inferior constrictor of pharynx" EXACT [] synonym: "Inferior constrictor pharyngeus" EXACT [] synonym: "inferior constrictor pharyngeus" EXACT [] synonym: "Inferior pharyngeal constrictor" EXACT [] xref: FMA:46623 xref: MA:0002279 is_a: UBERON:0001569 ! constrictor muscle of pharynx [Term] id: UBERON:0001571 name: genioglossus alt_id: UBERON:FMA_46690-MA_0002307 def: "." [Wikipedia:Genioglossus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Genioglossus" EXACT [] xref: EHDAA:9150 xref: FMA:46690 xref: HOG:0000847 xref: MA:0002307 xref: ncithesaurus:Genioglossus is_a: UBERON:0001575 ! extrinsic muscle of tongue is_a: UBERON:0003212 ! implied link automatically realized ! gustatory organ relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0001572 name: hyoglossus alt_id: UBERON:FMA_46691-MA_0002317 def: "." [Wikipedia:Hyoglossus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hyoglossus" EXACT [] xref: FMA:46691 xref: MA:0002317 is_a: UBERON:0001575 ! extrinsic muscle of tongue is_a: UBERON:0003212 ! implied link automatically realized ! gustatory organ relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0001573 name: styloglossus alt_id: UBERON:FMA_46692-MA_0002387 def: "." [Wikipedia:Styloglossus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Styloglossus" EXACT [] xref: FMA:46692 xref: MA:0002387 xref: ncithesaurus:Styloglossus is_a: UBERON:0001575 ! extrinsic muscle of tongue is_a: UBERON:0003212 ! implied link automatically realized ! gustatory organ relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0001574 name: palatoglossus alt_id: UBERON:FMA_46697-MA_0002351 def: "." [Wikipedia:Palatoglossus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Palatoglossus" EXACT [] xref: FMA:46697 xref: MA:0002351 is_a: UBERON:0002376 ! muscle of head [Term] id: UBERON:0001575 name: extrinsic muscle of tongue alt_id: UBERON:FMA_46699-MA_0002296 comment: This class was created automatically from a combination of ontologies synonym: "Extrinsic muscle of tongue" EXACT [] synonym: "extrinsic tongue muscle" EXACT [] xref: FMA:46699 xref: HOG:0000825 xref: MA:0002296 is_a: UBERON:0002376 ! muscle of head [Term] id: UBERON:0001576 name: intrinsic muscle of tongue alt_id: UBERON:FMA_46701-MA_0002327 comment: This class was created automatically from a combination of ontologies synonym: "Intrinsic lingual muscle" EXACT [] synonym: "intrinsic lingual muscle" EXACT [] synonym: "Intrinsic muscle of tongue" EXACT [] synonym: "intrinsic tongue muscle" EXACT [] xref: FMA:46701 xref: HOG:0000748 xref: MA:0002327 is_a: UBERON:0002376 ! muscle of head [Term] id: UBERON:0001577 name: muscle of face alt_id: UBERON:FMA_46751-XAO_0001013 def: "." [Wikipedia:Facial_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Face muscle" EXACT [] synonym: "face muscle" EXACT [] synonym: "Facial muscle" EXACT [] synonym: "facial muscle" EXACT [] synonym: "Muscle of face" EXACT [] xref: FMA:46751 xref: GAID:143 xref: ncithesaurus:Facial_Muscle xref: XAO:0001013 is_a: UBERON:0002376 ! muscle of head intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001456 ! face [Term] id: UBERON:0001578 name: orbicularis oculi alt_id: UBERON:FMA_46779-MA_0001254 def: "." [Wikipedia:Orbicularis_oculi] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Orbicularis oculi" EXACT [] xref: FMA:46779 xref: MA:0001254 xref: ncithesaurus:Orbicularis_Oculi is_a: UBERON:0000020 ! implied link automatically realized ! sense organ is_a: UBERON:0001577 ! muscle of face relationship: part_of UBERON:0001601 ! extra-ocular muscle [Term] id: UBERON:0001579 name: olfactory nerve alt_id: UBERON:FMA_46787-MA_0001096-XAO_0000426-ZFA_0000249 def: "Segment of neural tree organ which is continuous with the olfactory epithelium and an olfactory bulb. // Cranial nerve that supplies the nasal organ." [ISBN:0471209627, Wikipedia:Olfactory_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "CN-I" RELATED [] synonym: "cranial nerve I" RELATED [] synonym: "First cranial nerve" EXACT [] synonym: "first cranial nerve" EXACT [] synonym: "olfactory I nerve" EXACT [] synonym: "olfactory i nerve" EXACT [] synonym: "Olfactory nerve" EXACT [] synonym: "Olfactory nerve [I]" EXACT [] synonym: "olfactory nerve [i]" EXACT [] xref: BTO:0003648 xref: FMA:46787 xref: GAID:830 xref: HOG:0000703 xref: MA:0001096 xref: ncithesaurus:Olfactory_Nerve xref: NIF_GrossAnatomy:birnlex_1319 xref: OpenCyc:Mx4rvZuXAJwpEbGdrcN5Y29ycA xref: TAO:0000249 xref: XAO:0000426 xref: ZFA:0000249 is_a: UBERON:0001785 ! cranial nerve relationship: develops_from UBERON:0003050 ! olfactory placode [Term] id: UBERON:0001580 name: levator labii superioris alt_id: UBERON:FMA_46805-MA_0002333 def: "." [Wikipedia:Levator_labii_superioris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Levator labii superioris" EXACT [] xref: FMA:46805 xref: MA:0002333 xref: ncithesaurus:Levator_Labii_Superioris is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0001581 name: depressor labii inferioris alt_id: UBERON:FMA_46816-MA_0002287 def: "." [Wikipedia:Depressor_labii_inferioris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Depressor labii inferioris" EXACT [] xref: FMA:46816 xref: MA:0002287 xref: ncithesaurus:Depressor_Labii_Inferioris is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0001582 name: buccinator alt_id: UBERON:FMA_46834-MA_0002272 def: "." [Wikipedia:Buccinator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Buccinator" EXACT [] xref: FMA:46834 xref: MA:0002272 xref: ncithesaurus:Buccinator is_a: UBERON:0001577 ! muscle of face [Term] id: UBERON:0001583 name: extrinsic auricular muscle alt_id: UBERON:FMA_46854-MA_0001230 comment: This class was created automatically from a combination of ontologies synonym: "Extrinsic auricular muscle" EXACT [] xref: FMA:46854 xref: MA:0001230 is_a: UBERON:0001595 ! auricular muscle relationship: part_of UBERON:0001595 ! auricular muscle [Term] id: UBERON:0001584 name: left subclavian artery alt_id: UBERON:FMA_4694-MA_0002046 def: "." [Wikipedia:Left_subclavian_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Left subclavian artery" EXACT [] xref: FMA:4694 xref: MA:0002046 xref: ncithesaurus:Left_Subclavian_Artery xref: OpenCyc:Mx4rtW7hw6gEEdudWQACs5b6Bw is_a: UBERON:0001533 ! subclavian artery [Term] id: UBERON:0001585 name: superior vena cava alt_id: UBERON:FMA_4720-MA_0000481 def: "Trunk of systemic vein which is formed by the union of the right and left brachiocephalic veins and terminates in the right atrium." [Wikipedia:Superior_vena_cava] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anterior vena cava" EXACT [] synonym: "anterior vena cava" EXACT [] synonym: "Superior vena cava" EXACT [] xref: BTO:0002683 xref: EHDAA:8726 xref: FMA:4720 xref: GAID:549 xref: HOG:0001195 xref: MA:0000481 xref: ncithesaurus:Superior_Vena_Cava is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001009 ! circulatory system relationship: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0001586 name: internal jugular vein alt_id: UBERON:FMA_4724-MA_0002157 def: "." [Wikipedia:Internal_jugular_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Internal jugular vein" EXACT [] synonym: "Internal jugular venous tree" EXACT [] synonym: "internal jugular venous tree" EXACT [] xref: EHDAA:5407 xref: FMA:4724 xref: galen:InternalJugularVein xref: MA:0002157 xref: ncithesaurus:Internal_Jugular_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001587 name: subclavian vein alt_id: UBERON:FMA_4725-MA_0002221 def: "." [Wikipedia:Subclavian_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Subclavian vein" EXACT [] synonym: "Subclavian venous tree" EXACT [] synonym: "subclavian venous tree" EXACT [] xref: EHDAA:4455 xref: FMA:4725 xref: GAID:546 xref: MA:0002221 xref: ncithesaurus:Subclavian_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001588 name: vertebral vein alt_id: UBERON:FMA_4727-MA_0002262 def: "." [Wikipedia:Vertebral_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Vertebral vein" EXACT [] xref: FMA:4727 xref: MA:0002262 xref: ncithesaurus:Vertebral_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001589 name: internal thoracic vein alt_id: UBERON:FMA_4729-MA_0002237 def: "." [Wikipedia:Internal_thoracic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Internal thoracic vein" EXACT [] xref: FMA:4729 xref: MA:0002237 xref: ncithesaurus:Internal_Thoracic_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001590 name: pericardiacophrenic vein alt_id: UBERON:FMA_4742-MA_0002187 def: "Vena comitans of the pericardiacophrenic arteries." [Wikipedia:Pericardiacophrenic_veins] comment: This class was created automatically from a combination of ontologies synonym: "Pericardiacophrenic vein" EXACT [] xref: FMA:4742 xref: MA:0002187 xref: ncithesaurus:Pericardiacophrenic_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001591 name: thymic vein alt_id: UBERON:FMA_4747-MA_0002246 comment: This class was created automatically from a combination of ontologies synonym: "Thymic tributary of brachiocephalic vein" EXACT [] synonym: "thymic tributary of brachiocephalic vein" EXACT [] synonym: "Thymic vein" EXACT [] xref: FMA:4747 xref: MA:0002246 xref: ncithesaurus:Thymic_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001592 name: bronchial vein alt_id: UBERON:FMA_4749-MA_0002088 def: "." [Wikipedia:Bronchial_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bronchial vein" EXACT [] synonym: "Bronchial venous tree" EXACT [] synonym: "bronchial venous tree" EXACT [] xref: FMA:4749 xref: MA:0002088 xref: ncithesaurus:Bronchial_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001593 name: venous plexus alt_id: UBERON:FMA_4767-MA_0000069 def: "a congregation of multiple veins." [Wikipedia:Venous_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Venous network" EXACT [] synonym: "venous network" EXACT [] synonym: "Venous plexus" EXACT [] xref: FMA:4767 xref: MA:0000069 is_a: UBERON:0000063 ! organ segment relationship: has_part UBERON:0001638 ! vein relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0001594 name: azygos vein alt_id: UBERON:FMA_4838-MA_0002085 def: "." [Wikipedia:Azygos_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Azygos vein" EXACT [] synonym: "Azygos venous tree" EXACT [] synonym: "azygos venous tree" EXACT [] xref: FMA:4838 xref: GAID:528 xref: galen:AzygosVein xref: MA:0002085 xref: ncithesaurus:Azygos_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001595 name: auricular muscle alt_id: UBERON:FMA_48966-MA_0001229 comment: This class was created automatically from a combination of ontologies synonym: "Auricular muscle" EXACT [] synonym: "Muscle of auricle" EXACT [] synonym: "muscle of auricle" EXACT [] xref: FMA:48966 xref: MA:0001229 relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0001596 name: intrinsic auricular muscle alt_id: UBERON:FMA_48967-MA_0001231 comment: This class was created automatically from a combination of ontologies synonym: "Intrinsic auricular muscle" EXACT [] xref: FMA:48967 xref: MA:0001231 is_a: UBERON:0001595 ! auricular muscle relationship: part_of UBERON:0001595 ! auricular muscle [Term] id: UBERON:0001597 name: masseter alt_id: UBERON:FMA_48996-MA_0002343 def: "." [Wikipedia:Masseter] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Masseter" EXACT [] xref: BTO:0001755 xref: EHDAA:10561 xref: FMA:48996 xref: HOG:0000823 xref: MA:0002343 is_a: UBERON:0002376 ! muscle of head [Term] id: UBERON:0001598 name: temporalis alt_id: UBERON:FMA_49006-MA_0002390 def: "." [Wikipedia:Temporalis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Temporal muscle" EXACT [] synonym: "temporal muscle" EXACT [] synonym: "Temporalis" EXACT [] xref: EHDAA:10565 xref: FMA:49006 xref: GAID:148 xref: HOG:0000929 xref: MA:0002390 xref: ncithesaurus:Temporal_Muscle is_a: UBERON:0002376 ! muscle of head relationship: part_of UBERON:0001444 ! subdivision of head [Term] id: UBERON:0001599 name: stapedius alt_id: UBERON:FMA_49027-MA_0001220 def: "." [Wikipedia:Stapedius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Stapedius" EXACT [] xref: FMA:49027 xref: GAID:164 xref: MA:0001220 relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0001600 name: tensor tympani alt_id: UBERON:FMA_49028-MA_0001221 def: "." [Wikipedia:Tensor_tympani] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Eustachian muscle" EXACT [] synonym: "eustachian muscle" EXACT [] synonym: "Tensor tympani" EXACT [] xref: FMA:49028 xref: GAID:166 xref: MA:0001221 xref: ncithesaurus:Tensor_Tympani relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0001601 name: extra-ocular muscle alt_id: UBERON:FMA_49033-MA_0000271 def: "." [Wikipedia:Extra-ocular_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Extra-ocular muscle" EXACT [] synonym: "Extraocular muscle" EXACT [] synonym: "extraocular muscle" EXACT [] synonym: "Extrinsic muscle of eyeball" EXACT [] synonym: "extrinsic muscle of eyeball" EXACT [] synonym: "eye muscle" EXACT [] xref: AAO:0000156 xref: BTO:0001579 xref: EFO:0001921 xref: FMA:49033 xref: HOG:0000549 xref: MA:0000271 is_a: UBERON:0000020 ! implied link automatically realized ! sense organ is_a: UBERON:0001577 ! muscle of face relationship: part_of UBERON:0000970 ! eye [Term] id: UBERON:0001602 name: medial rectus alt_id: UBERON:FMA_49037-ZFA_0000301 def: "." [Wikipedia:Medial_rectus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Medial rectus" EXACT [] xref: FMA:49037 xref: TAO:0000301 xref: ZFA:0000301 is_a: UBERON:0001601 ! extra-ocular muscle relationship: part_of UBERON:0002376 ! muscle of head [Term] id: UBERON:0001603 name: lateral rectus alt_id: UBERON:FMA_49038-ZFA_0000383 def: "." [Wikipedia:Lateral_rectus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lateral rectus" EXACT [] xref: FMA:49038 xref: TAO:0000383 xref: ZFA:0000383 is_a: UBERON:0001601 ! extra-ocular muscle relationship: part_of UBERON:0002376 ! muscle of head [Term] id: UBERON:0001604 name: levator palpebrae superioris alt_id: UBERON:FMA_49041-MA_0001272 def: "." [Wikipedia:Levator_palpebrae_superioris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Levator palpebrae superioris" EXACT [] xref: FMA:49041 xref: MA:0001272 xref: ncithesaurus:Levator_Palpebrae_Superioris is_a: UBERON:0001601 ! extra-ocular muscle is_a: UBERON:0003660 ! implied link automatically realized ! eyelid muscle relationship: part_of UBERON:0001601 ! extra-ocular muscle relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0001605 name: ciliary muscle alt_id: UBERON:FMA_49151-MA_0001269 def: "." [Wikipedia:Ciliary_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ciliary muscle" EXACT [] xref: BTO:0000654 xref: FMA:49151 xref: MA:0001269 xref: ncithesaurus:Ciliary_Muscle is_a: UBERON:0001601 ! extra-ocular muscle relationship: part_of UBERON:0001775 ! ciliary body [Term] id: UBERON:0001606 name: muscle of iris alt_id: UBERON:FMA_49154-MA_0001287 def: "." [Wikipedia:Iris_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Iris muscle" EXACT [] synonym: "iris muscle" EXACT [] synonym: "Muscle of iris" EXACT [] xref: FMA:49154 xref: MA:0001287 is_a: UBERON:0000020 ! implied link automatically realized ! sense organ is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001769 ! iris relationship: part_of UBERON:0001769 ! iris [Term] id: UBERON:0001607 name: sphincter pupillae alt_id: UBERON:FMA_49157-MA_0001289 def: "." [Wikipedia:Sphincter_pupillae] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sphincter pupillae" EXACT [] xref: FMA:49157 xref: MA:0001289 is_a: UBERON:0001606 ! muscle of iris [Term] id: UBERON:0001608 name: dilatator pupillae alt_id: UBERON:FMA_49158-MA_0001288 def: "." [Wikipedia:Dilator_pupillae] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Dilatator pupillae" EXACT [] synonym: "Dilator muscle of pupil" EXACT [] synonym: "dilator muscle of pupil" EXACT [] synonym: "Dilator of pupil" EXACT [] synonym: "dilator of pupil" EXACT [] synonym: "Dilator pupillae" EXACT [] synonym: "dilator pupillae" EXACT [] xref: FMA:49158 xref: MA:0001288 is_a: UBERON:0001606 ! muscle of iris [Term] id: UBERON:0001609 name: isthmus of thyroid gland alt_id: UBERON:FMA_49178-MA_0000727 def: "." [Wikipedia:Thyroid_isthmus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Isthmus glandulae thyroideae" EXACT [] synonym: "isthmus glandulae thyroideae" EXACT [] synonym: "Isthmus of thyroid gland" EXACT [] synonym: "Thyroid gland isthmus" EXACT [] synonym: "thyroid gland isthmus" EXACT [] synonym: "Thyroid isthmus" EXACT [] synonym: "thyroid isthmus" EXACT [] xref: FMA:49178 xref: MA:0000727 xref: ncithesaurus:Thyroid_Gland_Isthmus is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002046 ! thyroid follicle [Term] id: UBERON:0001610 name: lingual artery alt_id: UBERON:FMA_49526-MA_0001992 def: "The lingual artery arises from the external carotid between the superior thyroid and facial artery[WP]." [Wikipedia:Lingual_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lingual artery" EXACT [] synonym: "Lingual branch of external carotid artery" EXACT [] synonym: "lingual branch of external carotid artery" EXACT [] xref: FMA:49526 xref: MA:0001992 xref: ncithesaurus:Lingual_Artery xref: OpenCyc:Mx4rvfqDCZwpEbGdrcN5Y29ycA is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001611 name: sublingual artery alt_id: UBERON:FMA_49543-MA_0002049 def: "." [Wikipedia:Sublingual_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sublingual artery" EXACT [] synonym: "Sublingual branch of lingual artery" EXACT [] synonym: "sublingual branch of lingual artery" EXACT [] xref: FMA:49543 xref: MA:0002049 xref: ncithesaurus:Sublingual_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001612 name: facial artery alt_id: UBERON:FMA_49549-MA_0001950 def: "." [Wikipedia:Facial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "External maxillary artery" EXACT [] synonym: "external maxillary artery" EXACT [] synonym: "Facial artery" EXACT [] xref: FMA:49549 xref: MA:0001950 xref: ncithesaurus:Facial_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0001456 ! face [Term] id: UBERON:0001613 name: occipital artery alt_id: UBERON:FMA_49586-MA_0002009 def: "." [Wikipedia:Occipital_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Occipital artery" EXACT [] xref: FMA:49586 xref: MA:0002009 xref: ncithesaurus:Occipital_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001614 name: superficial temporal artery alt_id: UBERON:FMA_49650-MA_0002062 def: "." [Wikipedia:Superficial_temporal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Superficial temporal artery" EXACT [] xref: BTO:0003747 xref: FMA:49650 xref: MA:0002062 xref: OpenCyc:Mx4rv33WkZwpEbGdrcN5Y29ycA is_a: UBERON:0001632 ! temporal artery [Term] id: UBERON:0001615 name: transverse facial artery alt_id: UBERON:FMA_49657-MA_0002068 def: "." [Wikipedia:Transverse_facial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Transverse facial artery" EXACT [] xref: FMA:49657 xref: MA:0002068 xref: ncithesaurus:Transverse_Facial_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001616 name: maxillary artery alt_id: UBERON:FMA_49675-MA_0001919 def: "." [Wikipedia:Maxillary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Internal maxillary artery" EXACT [] synonym: "internal maxillary artery" EXACT [] synonym: "Maxillary artery" EXACT [] xref: EHDAA:7357 xref: FMA:49675 xref: GAID:498 xref: MA:0001919 xref: ncithesaurus:Maxillary_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001617 name: mental artery alt_id: UBERON:FMA_49701-MA_0002002 def: "." [Wikipedia:Mental_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Mental artery" EXACT [] synonym: "Mental branch of inferior alveolar artery" EXACT [] synonym: "mental branch of inferior alveolar artery" EXACT [] xref: FMA:49701 xref: MA:0002002 xref: ncithesaurus:Mental_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001618 name: buccal artery alt_id: UBERON:FMA_49754-MA_0001924 def: "." [Wikipedia:Buccal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Buccal artery" EXACT [] xref: FMA:49754 xref: MA:0001924 xref: ncithesaurus:Buccal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001619 name: ophthalmic artery alt_id: UBERON:FMA_49868-MA_0002011 def: "." [Wikipedia:Ophthalmic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ophthalmic artery" EXACT [] xref: EHDAA:7363 xref: FMA:49868 xref: GAID:503 xref: MA:0002011 xref: OpenCyc:Mx4rvcCxpJwpEbGdrcN5Y29ycA is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001620 name: central retinal artery alt_id: UBERON:FMA_49879-MA_0002038 def: "." [Wikipedia:Central_retinal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Central artery of retina" EXACT [] synonym: "central artery of retina" EXACT [] synonym: "Central retinal artery" EXACT [] synonym: "Retinal artery" EXACT [] synonym: "retinal artery" EXACT [] synonym: "Zinn's artery" EXACT [] synonym: "zinn's artery" EXACT [] xref: FMA:49879 xref: GAID:508 xref: MA:0002038 xref: ncithesaurus:Retinal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001621 name: coronary artery alt_id: UBERON:FMA_49893-MA_0002453 def: "Systemic artery which supplies the heart." [Wikipedia:Coronary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Coronary arterial tree" EXACT [] synonym: "coronary arterial tree" EXACT [] synonym: "Coronary artery" EXACT [] xref: BTO:0000290 xref: EFO:0002551 xref: FMA:49893 xref: galen:CoronaryArtery xref: MA:0002453 xref: ncithesaurus:Coronary_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003498 ! implied link automatically realized ! heart blood vessel relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0001622 name: lacrimal artery alt_id: UBERON:FMA_49927-MA_0001988 def: "." [Wikipedia:Lacrimal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lacrimal artery" EXACT [] xref: FMA:49927 xref: MA:0001988 xref: ncithesaurus:Lacrimal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001623 name: dorsal nasal artery alt_id: UBERON:FMA_50000-MA_0001945 def: "." [Wikipedia:Dorsal_nasal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Dorsal nasal artery" EXACT [] synonym: "Dorsal nasal branch of ophthalmic artery" EXACT [] synonym: "dorsal nasal branch of ophthalmic artery" EXACT [] synonym: "External nasal artery" EXACT [] synonym: "external nasal artery" EXACT [] xref: FMA:50000 xref: MA:0001945 xref: ncithesaurus:Dorsal_Nasal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001624 name: anterior cerebral artery alt_id: UBERON:FMA_50028-MA_0001915 def: "." [Wikipedia:Anterior_cerebral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anterior cerebral artery" EXACT [] xref: EHDAA:5296 xref: FMA:50028 xref: GAID:485 xref: MA:0001915 xref: ncithesaurus:Anterior_Cerebral_Artery xref: OpenCyc:Mx4rv8biO5wpEbGdrcN5Y29ycA is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001625 name: right coronary artery alt_id: UBERON:FMA_50039-MA_0002455 def: "Coronary artery which emerges from the anterior aortic sinus, between the right auricle and the pulmonary trunk, and supplies the right side of the heart." [Wikipedia:Right_coronary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Right coronary arterial tree" EXACT [] synonym: "right coronary arterial tree" EXACT [] synonym: "Right coronary artery" EXACT [] xref: FMA:50039 xref: MA:0002455 xref: ncithesaurus:Right_Coronary_Artery is_a: UBERON:0001621 ! coronary artery [Term] id: UBERON:0001626 name: left coronary artery alt_id: UBERON:FMA_50040-MA_0002454 def: "Coronary artery which emerges from the left posterior aortic sinus, between the left auricle and the pulmonary trunk, and supplies the left side of the heart." [Wikipedia:Left_coronary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Left coronary arterial tree" EXACT [] synonym: "left coronary arterial tree" EXACT [] synonym: "Left coronary artery" EXACT [] xref: FMA:50040 xref: MA:0002454 xref: ncithesaurus:Left_Coronary_Artery is_a: UBERON:0001621 ! coronary artery [Term] id: UBERON:0001627 name: middle cerebral artery alt_id: UBERON:FMA_50079-MA_0001935 def: "." [Wikipedia:Middle_cerebral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Middle cerebral artery" EXACT [] synonym: "Sylvian artery" EXACT [] synonym: "sylvian artery" EXACT [] xref: EHDAA:5298 xref: FMA:50079 xref: GAID:487 xref: MA:0001935 xref: ncithesaurus:Middle_Cerebral_Artery xref: OpenCyc:Mx4rvh3qQ5wpEbGdrcN5Y29ycA is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001628 name: posterior communicating artery alt_id: UBERON:FMA_50084-MA_0002023-ZFA_0005001 def: "An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery. Isogai et al. 2001." [Wikipedia:Posterior_communicating_artery, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "caudal communicating segment" RELATED [] synonym: "PCA" RELATED [] synonym: "PCS" RELATED [] synonym: "Posterior communicating artery" EXACT [] synonym: "posterior communicating segment of the basilar artery" RELATED [] xref: EHDAA:3352 xref: FMA:50084 xref: MA:0002023 xref: ncithesaurus:Posterior_Communicating_Artery xref: TAO:0005001 xref: ZFA:0005001 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001629 name: carotid body alt_id: UBERON:FMA_50095-MA_0002463 def: "." [Wikipedia:Carotid_body] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Carotid body" EXACT [] xref: BTO:0000204 xref: FMA:50095 xref: GAID:813 xref: MA:0002463 xref: ncithesaurus:Carotid_Body is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0001630 name: muscle organ alt_id: UBERON:FMA_5022-MIAA_0000302-XAO_0000174 def: "Organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work[GO]. Nonparenchymatous organ that primarily consists of skeletal muscle tissue aggregated into macroscopic fasciculi by connective tissue; together with other muscles, it constitutes the muscular system. Examples: biceps, diaphragm, masseter, right third external intercostal muscle, external oblique, levator ani, serratus anterior[FMA]. // A body tissue consisting of long cells that contract when stimulated and produce motion. // Portion of tissue composed of contractile fibers." [GO:0007517, Wikipedia:Skeletal_muscle] subset: uberon_slim synonym: "adult somatic muscle" RELATED [] synonym: "Muscle organ" EXACT [] xref: BTO:0001103 xref: FMA:5022 xref: GAID:131 xref: MA:0000015 xref: OpenCyc:Mx4rv2kf-5wpEbGdrcN5Y29ycA xref: TAO:0005145 xref: XAO:0000172 xref: ZFA:0005145 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001015 ! muscle system [Term] id: UBERON:0001631 name: thoracic duct alt_id: UBERON:FMA_5031-ZFA_0005110 def: "Lymphatic trunk that connects all tributaries of the thoracic duct tree to the trunk of the left brachiocephalic vein. Examples: There is only one thoracic duct tree." [Wikipedia:Thoracic_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Thoracic duct" EXACT [] synonym: "Trunk of thoracic duct tree" EXACT [] synonym: "trunk of thoracic duct tree" EXACT [] xref: FMA:5031 xref: GAID:1290 xref: MA:0002801 xref: ncithesaurus:Thoracic_Duct xref: TAO:0005110 xref: ZFA:0005110 is_a: UBERON:0001473 ! lymphatic vessel relationship: develops_from UBERON:0002065 ! postcardinal vein [Term] id: UBERON:0001632 name: temporal artery alt_id: UBERON:FMA_50438-MA_0002061 def: "." [Wikipedia:Temporal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Temporal artery" EXACT [] xref: FMA:50438 xref: GAID:489 xref: MA:0002061 xref: ncithesaurus:Temporal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001633 name: basilar artery alt_id: UBERON:FMA_50542-MA_0001920-ZFA_0005002 def: "." [Wikipedia:Basilar_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "BA" RELATED [] synonym: "Basilar artery" EXACT [] xref: EHDAA:5285 xref: FMA:50542 xref: GAID:474 xref: HOG:0000237 xref: MA:0001920 xref: ncithesaurus:Basilar_Artery xref: TAO:0005002 xref: ZFA:0005002 is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel relationship: part_of UBERON:0002200 ! vasculature of head [Term] id: UBERON:0001634 name: mesencephalic artery alt_id: UBERON:FMA_50570-ZFA_0001068 def: "Develops from the proximal portion of the primitive mesencephalic artery. Isogai et al.2001." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Mesencephalic artery" EXACT [] synonym: "MsA" RELATED [] xref: FMA:50570 xref: TAO:0001068 xref: ZFA:0001068 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001635 name: superior cerebellar artery alt_id: UBERON:FMA_50573-MA_0001934 def: "." [Wikipedia:Superior_cerebellar_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Superior cerebellar artery" EXACT [] xref: FMA:50573 xref: MA:0001934 xref: ncithesaurus:Superior_Cerebellar_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel relationship: part_of UBERON:0001633 ! basilar artery [Term] id: UBERON:0001636 name: posterior cerebral artery alt_id: UBERON:FMA_50583-MA_0002022 def: "." [Wikipedia:Posterior_cerebral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Posterior cerebral artery" EXACT [] xref: FMA:50583 xref: GAID:488 xref: MA:0002022 xref: ncithesaurus:Posterior_Cerebral_Artery is_a: UBERON:0001637 ! artery is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel relationship: part_of UBERON:0001633 ! basilar artery [Term] id: UBERON:0001637 name: artery alt_id: UBERON:FMA_50720-MA_0000061-MA_0000064-MIAA_0000034-XAO_0000114-ZFA_0000005 def: "A vessel carrying blood away from the heart" [GO:0014824] comment: in FMA an artery is a tree subset: uberon_slim synonym: "arterial blood vessel" EXACT [] synonym: "Arterial subtree" EXACT [] synonym: "arterial subtree" EXACT [] synonym: "arterial system" RELATED [] synonym: "Arterial tree organ part" EXACT [] synonym: "arterial tree organ part" EXACT [] synonym: "Arterial vessel" EXACT [] synonym: "arterial vessel" EXACT [] synonym: "Artery" EXACT [] xref: BTO:0000573 xref: EFO:0000814 xref: FMA:50720 xref: GAID:468 xref: galen:Artery xref: HOG:0001251 xref: MA:0000064 xref: MAT:0000034 xref: MIAA:0000034 xref: ncithesaurus:Artery xref: OpenCyc:Mx4rvVjknZwpEbGdrcN5Y29ycA xref: TAO:0000005 xref: XAO:0000114 xref: ZFA:0000005 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0001638 name: vein alt_id: UBERON:FMA_50723-MA_0000066-MA_0000067-MIAA_0000037-XAO_0000115-ZFA_0000082 def: "Subdivision of venous tree (organ) which consists of branching sets of tubes (venous trunks) that form a tree; together with other venous trees (organ part), it constitutes a venous tree (organ). Examples: subclavian venous tree, jugular tree, extrahepatic portal tree, common iliac venous tree. // Any of the tubular branching vessels that carry blood from the capillaries toward the heart." [NLM:vein, Wikipedia:Vein] comment: TODO - check with MA - vein vs venous blood vessel subset: uberon_slim synonym: "Vein" EXACT [] synonym: "venous blood vessel" EXACT [] synonym: "Venous subtree" EXACT [] synonym: "venous subtree" EXACT [] synonym: "venous system" RELATED [] synonym: "Venous tree organ part" EXACT [] synonym: "venous tree organ part" EXACT [] synonym: "Venous vessel" EXACT [] synonym: "venous vessel" EXACT [] xref: BTO:0000234 xref: EFO:0000816 xref: FMA:50723 xref: GAID:492 xref: HOG:0001252 xref: MA:0000067 xref: MAT:0000037 xref: MIAA:0000037 xref: ncithesaurus:Vein xref: OpenCyc:Mx4rvVjkWpwpEbGdrcN5Y29ycA xref: TAO:0000082 xref: XAO:0000115 xref: ZFA:0000082 is_a: UBERON:0003920 ! venous blood vessel [Term] id: UBERON:0001639 name: hepatic portal vein alt_id: UBERON:FMA_50735-MA_0002132-ZFA_0005090 def: "." [Wikipedia:Hepatic_portal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hepatic portal tree" EXACT [] synonym: "hepatic portal tree" EXACT [] synonym: "Hepatic portal vein" EXACT [] synonym: "HPV" RELATED [] synonym: "primary hepatic portal veins" RELATED [] xref: FMA:50735 xref: HOG:0000642 xref: MA:0002132 xref: TAO:0005090 xref: ZFA:0005090 is_a: UBERON:0001143 ! implied link automatically realized ! hepatic vein is_a: UBERON:0002017 ! portal vein intersection_of: UBERON:0002017 ! portal vein intersection_of: part_of UBERON:0002107 ! liver [Term] id: UBERON:0001640 name: celiac artery alt_id: UBERON:FMA_50737-MA_0001931 def: "." [Wikipedia:Celiac_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Celiac artery" EXACT [] synonym: "Celiac tree" EXACT [] synonym: "celiac tree" EXACT [] synonym: "Coeliac artery" EXACT [] synonym: "coeliac artery" RELATED [] xref: FMA:50737 xref: GAID:483 xref: MA:0001931 xref: ncithesaurus:Coeliac_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0001641 name: transverse sinus alt_id: UBERON:FMA_50763-MA_0001868 def: "." [Wikipedia:Transverse_sinus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lateral sinus" EXACT [] synonym: "lateral sinus" EXACT [] synonym: "Transverse sinus" EXACT [] xref: FMA:50763 xref: MA:0001868 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001642 name: superior sagittal sinus alt_id: UBERON:FMA_50767-MA_0001867 def: "." [Wikipedia:Superior_sagittal_sinus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Superior sagittal sinus" EXACT [] xref: FMA:50767 xref: MA:0001867 xref: ncithesaurus:Superior_Sagittal_Sinus xref: OpenCyc:Mx4rv9naEJwpEbGdrcN5Y29ycA is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001643 name: oculomotor nerve alt_id: UBERON:FMA_50864-MA_0001095-XAO_0003090-ZFA_0000405 def: "Cranial nerve which connects the midbrain to the extra-ocular and intra-ocular muscles. // Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Oculomotor_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "CN-III" RELATED [] synonym: "cranial nerve III" RELATED [] synonym: "occulomotor" RELATED [] synonym: "oculomotor III nerve" EXACT [] synonym: "oculomotor iii nerve" EXACT [] synonym: "Oculomotor nerve" EXACT [] synonym: "Oculomotor nerve [III]" EXACT [] synonym: "oculomotor nerve [iii]" EXACT [] synonym: "Oculomotor nerve tree" EXACT [] synonym: "oculomotor nerve tree" EXACT [] synonym: "Third cranial nerve" EXACT [] synonym: "third cranial nerve" EXACT [] xref: FMA:50864 xref: GAID:829 xref: HOG:0000692 xref: MA:0001095 xref: ncithesaurus:Oculomotor_Nerve xref: NIF_GrossAnatomy:birnlex_1646 xref: TAO:0000405 xref: XAO:0003090 xref: ZFA:0000405 is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0001644 name: trochlear nerve alt_id: UBERON:FMA_50865-MA_0001105-XAO_0003091-ZFA_0000600 def: "Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Trochlear_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "CN-IV" RELATED [] synonym: "cranial nerve IV" RELATED [] synonym: "Fourth cranial nerve" EXACT [] synonym: "fourth cranial nerve" EXACT [] synonym: "pathetic nerve" RELATED [] synonym: "Superior oblique nerve" EXACT [] synonym: "superior oblique nerve" EXACT [] synonym: "trochlear" RELATED [] synonym: "trochlear IV nerve" EXACT [] synonym: "trochlear iv nerve" EXACT [] synonym: "Trochlear nerve" EXACT [] synonym: "Trochlear nerve [IV]" EXACT [] synonym: "trochlear nerve [iv]" EXACT [] synonym: "Trochlear nerve tree" EXACT [] synonym: "trochlear nerve tree" EXACT [] xref: FMA:50865 xref: GAID:838 xref: HOG:0000705 xref: MA:0001105 xref: ncithesaurus:Trochlear_Nerve xref: NIF_GrossAnatomy:birnlex_1654 xref: TAO:0000600 xref: XAO:0003091 xref: ZFA:0000600 is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0001645 name: trigeminal nerve alt_id: UBERON:FMA_50866-MA_0001100-XAO_0003092-ZFA_0000697 def: "Cranial nerve that branches into the ophthalmic (supplying the skin of the nose and upper jaw) and the mandibular (supplying the lower jaw)." [ISBN:0471209627, Wikipedia:Trigeminal_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "CN-V" RELATED [] synonym: "cranial nerve V" RELATED [] synonym: "Fifth cranial nerve" EXACT [] synonym: "fifth cranial nerve" EXACT [] synonym: "Trigeminal nerve" EXACT [] synonym: "Trigeminal nerve [V]" EXACT [] synonym: "trigeminal nerve [v]" EXACT [] synonym: "Trigeminal nerve tree" EXACT [] synonym: "trigeminal nerve tree" EXACT [] synonym: "trigeminal V nerve" EXACT [] synonym: "trigeminal v nerve" EXACT [] xref: BTO:0001072 xref: EFO:0001402 xref: FMA:50866 xref: GAID:726 xref: HOG:0000704 xref: MA:0001100 xref: ncithesaurus:Trigeminal_Nerve xref: NIF_GrossAnatomy:birnlex_869 xref: TAO:0000697 xref: XAO:0003092 xref: ZFA:0000697 is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0001646 name: abducens nerve alt_id: UBERON:FMA_50867-MA_0001087-XAO_0003093-ZFA_0000310 def: "Cranial nerve that runs to the eye muscles." [ISBN:0471209627, Wikipedia:Abducens_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Abducens nerve" EXACT [] synonym: "Abducens nerve [VI]" EXACT [] synonym: "abducens nerve [vi]" EXACT [] synonym: "Abducens nerve tree" EXACT [] synonym: "abducens nerve tree" EXACT [] synonym: "abducens VI nerve" EXACT [] synonym: "abducens vi nerve" EXACT [] synonym: "Abducent nerve" EXACT [] synonym: "abducent nerve" RELATED [] synonym: "Abducent nerve [VI]" EXACT [] synonym: "abducent nerve [vi]" EXACT [] synonym: "CN-VI" RELATED [] synonym: "cranial nerve VI" RELATED [] synonym: "Lateral rectus nerve" EXACT [] synonym: "lateral rectus nerve" EXACT [] synonym: "Nervus abducens" EXACT [] synonym: "nervus abducens" EXACT [] synonym: "Sixth cranial nerve" EXACT [] synonym: "sixth cranial nerve" EXACT [] xref: FMA:50867 xref: GAID:824 xref: HOG:0000697 xref: MA:0001087 xref: ncithesaurus:Abducens_Nerve xref: NIF_GrossAnatomy:birnlex_876 xref: TAO:0000310 xref: XAO:0003093 xref: ZFA:0000310 is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0001647 name: facial nerve alt_id: UBERON:FMA_50868-MA_0001091-XAO_0003094-ZFA_0000664 def: "Cranial nerve that branches into the supraorbital (supplying the skin of the eye region and the lateral line organs here), the palatine (to the roof of the buccal cavity), and the hyomandibular (dividing into the jugular and mental branches)." [ISBN:0471209627, Wikipedia:Facial_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Branchiomeric cranial nerve" EXACT [] synonym: "branchiomeric cranial nerve" EXACT [] synonym: "CN-VII" RELATED [] synonym: "cranial nerve VII" RELATED [] synonym: "Facial nerve" EXACT [] synonym: "Facial nerve [VII]" EXACT [] synonym: "facial nerve [vii]" EXACT [] synonym: "Facial nerve tree" EXACT [] synonym: "facial nerve tree" EXACT [] synonym: "facial VII nerve" EXACT [] synonym: "facial vii nerve" EXACT [] synonym: "Seventh cranial nerve" EXACT [] synonym: "seventh cranial nerve" EXACT [] xref: FMA:50868 xref: GAID:719 xref: HOG:0000706 xref: MA:0001091 xref: ncithesaurus:Facial_Nerve xref: NIF_GrossAnatomy:birnlex_827 xref: TAO:0000664 xref: XAO:0003094 xref: ZFA:0000664 is_a: UBERON:0001785 ! cranial nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001456 ! face relationship: part_of UBERON:0001033 ! gustatory system [Term] id: UBERON:0001648 name: vestibulocochlear nerve alt_id: UBERON:FMA_50869-FMA_53431-MA_0001109-XAO_0003095-ZFA_0000247 def: "Cranial nerve that runs to the ear." [ISBN:0471209627, Wikipedia:Vestibulocochlear_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Acoustic nerve" EXACT [] synonym: "acoustic nerve" EXACT [] synonym: "Acoustic nerve (Crosby)" EXACT [] synonym: "acoustic nerve (crosby)" EXACT [] synonym: "Auditory nerve" EXACT [] synonym: "auditory nerve" EXACT [] synonym: "CN-VIII" RELATED [] synonym: "Cochlear nerve" EXACT [] synonym: "cochlear nerve" EXACT [] synonym: "Cochlear root of acoustic nerve" EXACT [] synonym: "cochlear root of acoustic nerve" EXACT [] synonym: "Cochlear root of eighth cranial nerve" EXACT [] synonym: "cochlear root of eighth cranial nerve" EXACT [] synonym: "Cochlear-vestibular nerve" EXACT [] synonym: "cochlear-vestibular nerve" EXACT [] synonym: "Cochleovestibular nerve" EXACT [] synonym: "cochleovestibular nerve" EXACT [] synonym: "cranial nerve VIII" RELATED [] synonym: "Eighth cranial nerve" EXACT [] synonym: "eighth cranial nerve" EXACT [] synonym: "octaval nerve" RELATED [] synonym: "Stato-acoustic nerve" EXACT [] synonym: "stato-acoustic nerve" EXACT [] synonym: "Statoacoustic nerve" EXACT [] synonym: "statoacoustic nerve" RELATED [] synonym: "Vestibulocochlear nerve" EXACT [] synonym: "Vestibulocochlear nerve [VIII]" EXACT [] synonym: "vestibulocochlear nerve [viii]" EXACT [] synonym: "Vestibulocochlear nerve tree" EXACT [] synonym: "vestibulocochlear nerve tree" EXACT [] synonym: "vestibulocochlear VIII nerve" EXACT [] synonym: "vestibulocochlear viii nerve" EXACT [] xref: BTO:0003490 xref: FMA:50869 xref: FMA:53431 xref: GAID:723 xref: GAID:839 xref: HOG:0000695 xref: MA:0001109 xref: ncithesaurus:Cochlear_Nerve xref: NIF_GrossAnatomy:birnlex_890 xref: OpenCyc:Mx4rvVjMFZwpEbGdrcN5Y29ycA xref: TAO:0000247 xref: XAO:0003095 xref: ZFA:0000247 is_a: UBERON:0001785 ! cranial nerve relationship: continuous_with UBERON:0001844 ! cochlea [Term] id: UBERON:0001649 name: glossopharyngeal nerve alt_id: UBERON:FMA_50870-MA_0001093-XAO_0003096-ZFA_0000668 def: "Cranial nerve that branches into the ramus communicans (to the skin), the pretrematic (to the walls of the pharynx and mouth, viscero-sensory fibers), and the larval post-trematic branch (lost in the adult)." [ISBN:0471209627, Wikipedia:Glossopharyngeal_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "CN-IX" RELATED [] synonym: "cranial nerve IX" RELATED [] synonym: "glossopharyngeal IX nerve" EXACT [] synonym: "glossopharyngeal ix nerve" EXACT [] synonym: "Glossopharyngeal nerve" EXACT [] synonym: "Glossopharyngeal nerve [IX]" EXACT [] synonym: "glossopharyngeal nerve [ix]" EXACT [] synonym: "Glossopharyngeal nerve tree" EXACT [] synonym: "glossopharyngeal nerve tree" EXACT [] synonym: "Ninth cranial nerve" EXACT [] synonym: "ninth cranial nerve" EXACT [] xref: FMA:50870 xref: GAID:827 xref: HOG:0000701 xref: MA:0001093 xref: ncithesaurus:Glossopharyngeal_Nerve xref: NIF_GrossAnatomy:birnlex_899 xref: TAO:0000668 xref: XAO:0003096 xref: ZFA:0000668 is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0001033 ! gustatory system [Term] id: UBERON:0001650 name: hypoglossal nerve alt_id: UBERON:FMA_50871-MA_0001094 def: "Nerve that innervates all the intrinsic and all but one of the extrinsic muscles of the tongue." [GO:0021566, Wikipedia:Hypoglossal_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hypoglossal nerve" EXACT [] synonym: "Hypoglossal nerve [XII]" EXACT [] synonym: "hypoglossal nerve [xii]" EXACT [] synonym: "Hypoglossal nerve tree" EXACT [] synonym: "hypoglossal nerve tree" EXACT [] synonym: "hypoglossal XII nerve" EXACT [] synonym: "hypoglossal xii nerve" EXACT [] synonym: "Twelfth cranial nerve" EXACT [] synonym: "twelfth cranial nerve" EXACT [] xref: BTO:0003386 xref: FMA:50871 xref: GAID:828 xref: HOG:0000693 xref: MA:0001094 xref: ncithesaurus:Hypoglossal_Nerve xref: NIF_GrossAnatomy:birnlex_820 xref: OpenCyc:Mx4rv9eWA5wpEbGdrcN5Y29ycA is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0001651 name: right pulmonary artery alt_id: UBERON:FMA_50872-MA_0002500 def: "." [Wikipedia:Right_pulmonary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Right main pulmonary artery" EXACT [] synonym: "right main pulmonary artery" EXACT [] synonym: "Right pulmonary arterial tree" EXACT [] synonym: "right pulmonary arterial tree" EXACT [] synonym: "Right pulmonary artery" EXACT [] xref: FMA:50872 xref: MA:0002500 xref: ncithesaurus:Right_Pulmonary_Artery is_a: UBERON:0002012 ! pulmonary artery [Term] id: UBERON:0001652 name: left pulmonary artery alt_id: UBERON:FMA_50873-MA_0002032 def: "." [Wikipedia:Left_pulmonary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Left main pulmonary artery" EXACT [] synonym: "left main pulmonary artery" EXACT [] synonym: "Left pulmonary arterial tree" EXACT [] synonym: "left pulmonary arterial tree" EXACT [] synonym: "Left pulmonary artery" EXACT [] xref: FMA:50873 xref: galen:LeftPulmonaryArtery xref: MA:0002032 xref: ncithesaurus:Left_Pulmonary_Artery is_a: UBERON:0002012 ! pulmonary artery [Term] id: UBERON:0001653 name: facial vein alt_id: UBERON:FMA_50874-MA_0002115 def: "." [Wikipedia:Facial_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Facial vein" EXACT [] xref: FMA:50874 xref: MA:0002115 xref: ncithesaurus:Facial_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0001456 ! face [Term] id: UBERON:0001654 name: supra-orbital vein alt_id: UBERON:FMA_50904-MA_0002228 def: "." [Wikipedia:Supra-orbital_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Supra-orbital vein" EXACT [] synonym: "Supraorbital vein" EXACT [] synonym: "supraorbital vein" EXACT [] xref: FMA:50904 xref: MA:0002228 xref: ncithesaurus:Supra-orbital_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001655 name: submental vein alt_id: UBERON:FMA_50925-MA_0002223 comment: This class was created automatically from a combination of ontologies synonym: "Submental vein" EXACT [] xref: FMA:50925 xref: MA:0002223 xref: ncithesaurus:Submental_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001656 name: retromandibular vein alt_id: UBERON:FMA_50928-MA_0002117 def: "." [Wikipedia:Retromandibular_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "posterior facial vein" EXACT [] synonym: "Retromandibular vein" EXACT [] xref: FMA:50928 xref: MA:0002117 xref: ncithesaurus:Temporo-maxillary_Vein xref: OpenCyc:Mx4rv0bn95wpEbGdrcN5Y29ycA is_a: UBERON:0001653 ! facial vein [Term] id: UBERON:0001657 name: superficial temporal vein alt_id: UBERON:FMA_50932-MA_0002242 def: "." [Wikipedia:Superficial_temporal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Superficial temporal vein" EXACT [] xref: BTO:0003748 xref: FMA:50932 xref: MA:0002242 xref: ncithesaurus:Superficial_Temporal_Vein is_a: UBERON:0001671 ! temporal vein [Term] id: UBERON:0001658 name: middle temporal vein alt_id: UBERON:FMA_50935-MA_0002241 comment: This class was created automatically from a combination of ontologies synonym: "Middle temporal vein" EXACT [] xref: FMA:50935 xref: MA:0002241 is_a: UBERON:0001671 ! temporal vein [Term] id: UBERON:0001659 name: transverse facial vein alt_id: UBERON:FMA_50938-MA_0002247 def: "." [Wikipedia:Transverse_facial_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Transverse facial vein" EXACT [] xref: FMA:50938 xref: MA:0002247 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001660 name: maxillary vein alt_id: UBERON:FMA_50941-MA_0002169 def: "." [Wikipedia:Maxillary_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Maxillary vein" EXACT [] xref: FMA:50941 xref: MA:0002169 xref: ncithesaurus:Internal_Maxillary_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001661 name: deep temporal vein alt_id: UBERON:FMA_50954-MA_0002240 comment: This class was created automatically from a combination of ontologies synonym: "Deep temporal vein" EXACT [] xref: FMA:50954 xref: MA:0002240 xref: ncithesaurus:Deep_Temporal_Vein is_a: UBERON:0001671 ! temporal vein [Term] id: UBERON:0001662 name: anterior auricular vein alt_id: UBERON:FMA_50956-MA_0002083 comment: This class was created automatically from a combination of ontologies synonym: "Anterior auricular vein" EXACT [] xref: FMA:50956 xref: MA:0002083 xref: ncithesaurus:Anterior_Auricular_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001663 name: cerebral vein alt_id: UBERON:FMA_50981-MA_0002096 comment: This class was created automatically from a combination of ontologies synonym: "Cerebral vein" EXACT [] xref: FMA:50981 xref: GAID:530 xref: MA:0002096 xref: ncithesaurus:Cerebral_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001664 name: inferior cerebral vein alt_id: UBERON:FMA_50986-MA_0002097 def: "." [Wikipedia:Inferior_cerebral_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Inferior cerebral vein" EXACT [] xref: FMA:50986 xref: MA:0002097 is_a: UBERON:0001663 ! cerebral vein [Term] id: UBERON:0001665 name: triceps surae alt_id: UBERON:FMA_51062-MA_0002400 def: "." [Wikipedia:Triceps_surae] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "sural triceps" RELATED [] synonym: "Triceps surae" EXACT [] xref: FMA:51062 xref: MA:0002400 xref: ncithesaurus:Triceps_Surae is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0001666 name: flexor digitorum longus alt_id: UBERON:FMA_51071-MA_0002299 def: "." [Wikipedia:Flexor_digitorum_longus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Flexor digitorum longus" EXACT [] xref: BTO:0000466 xref: FMA:51071 xref: MA:0002299 xref: ncithesaurus:Flexor_Digitorum_Longus is_a: UBERON:0001383 ! muscle of leg [Term] id: UBERON:0001667 name: tibialis posterior alt_id: UBERON:FMA_51099-MA_0002394 def: "." [Wikipedia:Tibialis_posterior] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "tibialis caudalis" EXACT [] synonym: "Tibialis posterior" EXACT [] xref: BTO:0000867 xref: FMA:51099 xref: MA:0002394 xref: ncithesaurus:Tibialis_Caudalis is_a: UBERON:0001383 ! muscle of leg [Term] id: UBERON:0001668 name: cerebellar vein alt_id: UBERON:FMA_51227-MA_0002093 comment: This class was created automatically from a combination of ontologies synonym: "Cerebellar vein" EXACT [] xref: FMA:51227 xref: MA:0002093 xref: ncithesaurus:Cerebellar_Vein is_a: UBERON:0001638 ! vein is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0003499 ! implied link automatically realized ! brain blood vessel intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0001669 name: superior cerebellar vein alt_id: UBERON:FMA_51232-MA_0002095 def: "." [Wikipedia:Superior_cerebellar_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Superior cerebellar vein" EXACT [] synonym: "Vein of superior cerebellar hemisphere" EXACT [] synonym: "vein of superior cerebellar hemisphere" EXACT [] xref: FMA:51232 xref: MA:0002095 is_a: UBERON:0001668 ! cerebellar vein [Term] id: UBERON:0001670 name: inferior cerebellar vein alt_id: UBERON:FMA_51233-MA_0002094 def: "." [Wikipedia:Inferior_cerebellar_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Inferior cerebellar vein" EXACT [] synonym: "Inferior vein of cerebellar hemisphere" EXACT [] synonym: "inferior vein of cerebellar hemisphere" EXACT [] xref: FMA:51233 xref: MA:0002094 is_a: UBERON:0001668 ! cerebellar vein [Term] id: UBERON:0001671 name: temporal vein alt_id: UBERON:FMA_51302-MA_0002239 def: "." [Wikipedia:Temporal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Temporal vein" EXACT [] xref: FMA:51302 xref: MA:0002239 xref: ncithesaurus:Temporal_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001672 name: anterior cerebral vein alt_id: UBERON:FMA_51306-ZFA_0001067 comment: This class was created automatically from a combination of ontologies synonym: "ACeV" RELATED [] synonym: "Anterior cerebral vein" EXACT [] synonym: "rostral cerebral vein" RELATED [] xref: FMA:51306 xref: TAO:0001067 xref: ZFA:0001067 is_a: UBERON:0001663 ! cerebral vein is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel relationship: part_of UBERON:0002200 ! vasculature of head [Term] id: UBERON:0001673 name: central retinal vein alt_id: UBERON:FMA_51799-MA_0002213 def: "." [Wikipedia:Central_retinal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Central retinal vein" EXACT [] synonym: "retinal vein" EXACT [] xref: FMA:51799 xref: GAID:524 xref: MA:0002213 xref: ncithesaurus:Retinal_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001674 name: masseteric vein alt_id: UBERON:FMA_52519-MA_0002167 comment: This class was created automatically from a combination of ontologies synonym: "Masseteric vein" EXACT [] xref: FMA:52519 xref: MA:0002167 xref: ncithesaurus:Masseteric_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0001675 name: trigeminal ganglion alt_id: UBERON:FMA_52618-XAO_0000427-XAO_0000428-ZFA_0000295 def: "A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. Kimmel et al, 1995." [Wikipedia:Trigeminal_ganglion, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "gasserian ganglia" RELATED [] synonym: "Gasserian ganglion" EXACT [] synonym: "gasserian ganglion" EXACT [] synonym: "gV" RELATED [] synonym: "Semilunar ganglion" EXACT [] synonym: "semilunar ganglion" EXACT [] synonym: "trigeminal ganglia" RELATED [] synonym: "Trigeminal ganglion" EXACT [] synonym: "trigeminus ganglion" RELATED [] xref: BTO:0001231 xref: EFO:0000903 xref: FMA:52618 xref: GAID:725 xref: MAT:0000511 xref: ncithesaurus:Trigeminal_Ganglion xref: TAO:0000295 xref: XAO:0000427 xref: XAO:0000428 xref: ZFA:0000295 is_a: UBERON:0001714 ! ganglion of cranial nerve relationship: develops_from UBERON:0003070 ! trigeminal placode [Term] id: UBERON:0001676 name: occipital bone alt_id: UBERON:FMA_52735-MA_0001468 def: "." [Wikipedia:Occipital_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Occipital bone" EXACT [] xref: FMA:52735 xref: GAID:227 xref: MA:0001468 xref: ncithesaurus:Occipital_Bone is_a: UBERON:0001474 ! bone [Term] id: UBERON:0001677 name: sphenoid bone alt_id: UBERON:FMA_52736-MA_0001472 def: "." [Wikipedia:Sphenoid_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sphenoid" EXACT [] synonym: "sphenoid" EXACT [] synonym: "Sphenoid bone" EXACT [] synonym: "Sphenoidal bone" EXACT [] synonym: "sphenoidal bone" EXACT [] xref: FMA:52736 xref: GAID:230 xref: MA:0001472 xref: ncithesaurus:Sphenoid_Bone is_a: UBERON:0001474 ! bone [Term] id: UBERON:0001678 name: temporal bone alt_id: UBERON:FMA_52737-MA_0001476 def: "." [Wikipedia:Temporal_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Temporal bone" EXACT [] xref: EHDAA:6035 xref: FMA:52737 xref: GAID:232 xref: HOG:0000800 xref: MA:0001476 xref: ncithesaurus:Temporal_Bone xref: OpenCyc:Mx4rvbkAk5wpEbGdrcN5Y29ycA is_a: UBERON:0001474 ! bone [Term] id: UBERON:0001679 name: ethmoid alt_id: UBERON:FMA_52740-MA_0001483-ZFA_0000323 def: "Median unpaired cartilage bone that ossifies as a perichondral lamellae ensheathing the nasal septum anterodorsally and laterally (Harrington, 1955). In adult D. rerio, the center of the mesethmoid remains cartilaginous (Cubbage & Mabee, 1996). The mesethmoid meets the supraethmoid dorsally, the lateral ethmoids posterolaterally, and the vomer and parasphenoid ventrally in synostoses. Anterolaterally the mesthmoid meets the preethmoids in synchondroses." [Wikipedia:Ethmoid, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ethmoid" EXACT [] synonym: "ethmoid bone" EXACT [] synonym: "Ethmoidal bone" EXACT [] synonym: "ethmoidal bone" EXACT [] synonym: "mesethmoid bone" EXACT [] xref: FMA:52740 xref: GAID:212 xref: MA:0001483 xref: ncithesaurus:Ethmoid_Bone xref: TAO:0000323 xref: ZFA:0000323 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue relationship: part_of UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0001680 name: lacrimal bone alt_id: UBERON:FMA_52741-MA_0001486 def: "." [Wikipedia:Lacrimal_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lacrimal bone" EXACT [] synonym: "lacrymal bone" RELATED [] xref: FMA:52741 xref: HOG:0001149 xref: MA:0001486 xref: ncithesaurus:Lacrimal_Bone is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0001681 name: nasal bone alt_id: UBERON:FMA_52745-MA_0001494-ZFA_0000365 def: "Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish Cubbage and Mabee, 1996." [Wikipedia:Nasal_bone, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Nasal bone" EXACT [] xref: FMA:52745 xref: GAID:222 xref: HOG:0001370 xref: MA:0001494 xref: ncithesaurus:Nasal_Bone xref: TAO:0000365 xref: ZFA:0000365 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone relationship: part_of UBERON:0000004 ! olfactory apparatus relationship: part_of UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0001682 name: palatine bone alt_id: UBERON:FMA_52746-MA_0001495 def: "." [Wikipedia:Palatine_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Palatine bone" EXACT [] xref: FMA:52746 xref: MA:0001495 xref: ncithesaurus:Palatine_Bone is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0001683 name: zygomatic bone alt_id: UBERON:FMA_52747-MA_0001497 def: "." [Wikipedia:Zygomatic_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cheek bone" EXACT [] synonym: "cheek bone" EXACT [] synonym: "Orbital bone" EXACT [] synonym: "orbital bone" EXACT [] synonym: "Zygomatic bone" EXACT [] xref: FMA:52747 xref: MA:0001497 is_a: UBERON:0001474 ! bone is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0001567 ! cheek relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0001684 name: mandible alt_id: UBERON:FMA_52748-MA_0001487 def: "." [Wikipedia:Mandible] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lower jaw bone" EXACT [] synonym: "lower jaw bone" EXACT [] synonym: "Mandible" EXACT [] synonym: "Mandibulla" EXACT [] synonym: "mandibulla" EXACT [] xref: BTO:0001748 xref: EFO:0001965 xref: EHDAA:8007 xref: FMA:52748 xref: GAID:68 xref: HAO:0000506 xref: MA:0001487 xref: ncithesaurus:Mandible is_a: UBERON:0001474 ! bone is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0001710 ! lower jaw relationship: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0001685 name: hyoid bone alt_id: UBERON:FMA_52749-MA_0001484 def: "." [Wikipedia:Hyoid_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hyoid bone" EXACT [] xref: AAO:0000684 xref: FMA:52749 xref: GAID:197 xref: MA:0001484 xref: ncithesaurus:Hyoid_Bone is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0001686 name: auditory ossicle alt_id: UBERON:FMA_52750-MA_0000254-XAO_0000214 def: "." [Wikipedia:Auditory_ossicle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "auditory bone" EXACT [] synonym: "Auditory ossicle" EXACT [] synonym: "ear bone" RELATED [] xref: FMA:52750 xref: HOG:0000461 xref: MA:0000254 xref: ncithesaurus:Auditory_Ossicle xref: XAO:0000214 is_a: UBERON:0000020 ! implied link automatically realized ! sense organ is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0001687 name: stapes alt_id: UBERON:FMA_52751-MA_0001217 def: "." [Wikipedia:Stapes] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Stapes" EXACT [] synonym: "Stirrup" EXACT [] synonym: "stirrup" EXACT [] xref: FMA:52751 xref: GAID:868 xref: MA:0001217 xref: ncithesaurus:Stapes xref: OpenCyc:Mx4rv5UnkZwpEbGdrcN5Y29ycA is_a: UBERON:0001686 ! auditory ossicle [Term] id: UBERON:0001688 name: incus alt_id: UBERON:FMA_52752-MA_0001215 def: "." [Wikipedia:Incus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Incus" EXACT [] xref: FMA:52752 xref: GAID:866 xref: MA:0001215 xref: ncithesaurus:Incus is_a: UBERON:0001686 ! auditory ossicle [Term] id: UBERON:0001689 name: malleus alt_id: UBERON:FMA_52753-MA_0001216 def: "." [Wikipedia:Malleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Malleus" EXACT [] xref: FMA:52753 xref: GAID:867 xref: MA:0001216 xref: ncithesaurus:Malleus is_a: UBERON:0001686 ! auditory ossicle [Term] id: UBERON:0001690 name: ear alt_id: UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138 def: "Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "auditory apparatus" RELATED [] synonym: "Ear" EXACT [] synonym: "otic vesicle" RELATED [] xref: BTO:0000368 xref: EFO:0000826 xref: EHDAA:502 xref: FMA:52780 xref: GAID:62 xref: galen:Ear xref: HOG:0000330 xref: MA:0000236 xref: MAT:0000138 xref: MIAA:0000138 xref: ncithesaurus:Ear xref: NIF_GrossAnatomy:birnlex_1062 xref: OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA xref: XAO:0000189 is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0000033 ! head relationship: part_of UBERON:0002105 ! auditory system [Term] id: UBERON:0001691 name: external ear alt_id: UBERON:FMA_52781-MA_0000258-MIAA_0000147-XAO_0000190 def: "Part of the ear external to the tympanum (eardrum). It consists of a tube (the external auditory meatus) that directs sound waves on to the tympanum, and may also include the external pinna, which extends beyond the skull[GO]." [GO:0042473, Wikipedia:External_ear] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Auricular region" EXACT [] synonym: "auricular region" EXACT [] synonym: "Auricular region of head" EXACT [] synonym: "auricular region of head" EXACT [] synonym: "External ear" EXACT [] synonym: "outer ear" EXACT [] xref: BTO:0002100 xref: EHDAA:3786 xref: EHDAA:5343 xref: EHDAA:5352 xref: FMA:52781 xref: GAID:104 xref: HOG:0000311 xref: MA:0000258 xref: MAT:0000147 xref: MIAA:0000147 xref: ncithesaurus:External_Ear xref: NIF_GrossAnatomy:birnlex_1705 xref: XAO:0000190 is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0001692 name: basilar part of occipital bone alt_id: UBERON:FMA_52858-MA_0001462-ZFA_0000472 def: "Large median unpaired cartilage bone that contacts the exocciptal, epiotic and pterotic dorsally, and the parasphenoid anteriorly. Forms the posteroventral hind margin of the cranium, articulates with the centrum of the first vertebra. Bears a posteroventral pharyngeal process that is flattened ventrally and opposes the pharyngeal teeth of the fifth pair of ceratobranchials." [Wikipedia:Basilar_part_of_occipital_bone, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Basilar part of occipital bone" EXACT [] synonym: "Basioccipital" EXACT [] synonym: "basioccipital" EXACT [] synonym: "basioccipital bone" EXACT [] xref: AAO:0000039 xref: FMA:52858 xref: HOG:0001152 xref: MA:0001462 xref: TAO:0000472 xref: ZFA:0000472 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0001693 name: lateral part of occipital bone alt_id: UBERON:FMA_52859-MA_0001464-ZFA_0000661 def: "Paired cartilage bone that bears a large foramen (lateral occipital foramen). Contacts the supraoccipital dorsally, the epiotic laterally and the basioccipital ventrally. Forms the posterior hind margin of the cranium and borders the lateral and posterior margins of the forum (foramen) magnum." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Exoccipital" EXACT [] synonym: "exoccipital" EXACT [] synonym: "exoccipital bone" EXACT [] synonym: "Lateral part of occipital bone" EXACT [] xref: AAO:0000147 xref: FMA:52859 xref: HOG:0001151 xref: MA:0001464 xref: TAO:0000661 xref: ZFA:0000661 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex is_a: UBERON:0003465 ! implied link automatically realized ! chondrocranium bone relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0001694 name: petrous part of temporal bone alt_id: UBERON:FMA_52871-MA_0001477 def: "." [Wikipedia:Petrous_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pars petrosa (os temporale)" EXACT [] synonym: "pars petrosa (os temporale)" EXACT [] synonym: "Petromastoid part of temporal bone" EXACT [] synonym: "petromastoid part of temporal bone" EXACT [] synonym: "Petrosal bone" EXACT [] synonym: "petrosal bone" EXACT [] synonym: "Petrous bone" EXACT [] synonym: "petrous bone" EXACT [] synonym: "Petrous part of temporal bone" EXACT [] synonym: "temporal bone petrous part" EXACT [] xref: FMA:52871 xref: GAID:234 xref: MA:0001477 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001678 ! temporal bone [Term] id: UBERON:0001695 name: squamous part of temporal bone alt_id: UBERON:FMA_52883-MA_0001473 comment: This class was created automatically from a combination of ontologies synonym: "Pars squamosa (os temporale)" EXACT [] synonym: "pars squamosa (os temporale)" EXACT [] synonym: "squamosal bone" EXACT [] synonym: "Squamous bone" EXACT [] synonym: "squamous bone" EXACT [] synonym: "Squamous part of temporal bone" EXACT [] xref: FMA:52883 xref: MA:0001473 is_a: UBERON:0001474 ! bone [Term] id: UBERON:0001696 name: alveolar process of maxilla alt_id: UBERON:FMA_52897-MA_0001492 def: "." [Wikipedia:Alveolar_process_of_maxilla] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Alveolar part of maxilla" EXACT [] synonym: "alveolar part of maxilla" EXACT [] synonym: "Alveolar process of maxilla" EXACT [] synonym: "maxilla alveolar process" EXACT [] synonym: "Processus alveolaris (maxilla)" EXACT [] synonym: "processus alveolaris (maxilla)" EXACT [] xref: FMA:52897 xref: MA:0001492 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0002397 ! maxilla [Term] id: UBERON:0001697 name: orbit alt_id: UBERON:FMA_53074-MA_0002482 def: "." [Wikipedia:Orbit_(anatomy)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Orbit" EXACT [] synonym: "Orbit of skull" EXACT [] synonym: "orbit of skull" EXACT [] xref: AAO:0000343 xref: FMA:53074 xref: GAID:223 xref: HAO:0000672 xref: MA:0002482 xref: ncithesaurus:Orbit xref: OpenCyc:Mx4rvW8EgZwpEbGdrcN5Y29ycA is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001456 ! face [Term] id: UBERON:0001698 name: foramen ovale alt_id: UBERON:FMA_53155-MA_0001873 def: "." [Wikipedia:Foramen_ovale] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Foramen ovale" EXACT [] xref: EHDAA:10627 xref: FMA:53155 xref: galen:ForamenOvale xref: HOG:0001189 xref: MA:0001873 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002085 ! interatrial septum [Term] id: UBERON:0001699 name: sensory root of facial nerve alt_id: UBERON:FMA_53410-ZFA_0000679 def: "." [Wikipedia:Intermediate_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Intermediate nerve" EXACT [] synonym: "intermediate nerve" EXACT [] synonym: "Sensory root of facial nerve" EXACT [] synonym: "Wrisberg's nerve" EXACT [] synonym: "wrisberg's nerve" EXACT [] xref: FMA:53410 xref: TAO:0000679 xref: ZFA:0000679 is_a: UBERON:0002211 ! segment of nerve is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0001700 name: geniculate ganglion alt_id: UBERON:FMA_53414-MA_0001076-ZFA_0001291 def: "." [Wikipedia:Geniculate_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "facial ganglion" EXACT [] synonym: "facial VII ganglion" EXACT [] synonym: "facial vii ganglion" EXACT [] synonym: "Ganglion genicularum" EXACT [] synonym: "ganglion genicularum" EXACT [] synonym: "Genicular ganglion" EXACT [] synonym: "genicular ganglion" EXACT [] synonym: "Geniculate ganglion" EXACT [] synonym: "gVII" RELATED [] xref: EHDAA:5567 xref: EHDAA:6644 xref: FMA:53414 xref: GAID:718 xref: HOG:0000707 xref: MA:0001076 xref: ncithesaurus:Geniculate_Ganglion xref: TAO:0001291 xref: ZFA:0001291 is_a: UBERON:0002420 ! basal ganglia [Term] id: UBERON:0001701 name: glossopharyngeal ganglion alt_id: UBERON:FMA_53471-ZFA_0001301 comment: This class was created automatically from a combination of ontologies synonym: "Ganglion of glosspharyngeal nerve" EXACT [] synonym: "ganglion of glosspharyngeal nerve" EXACT [] synonym: "gIX" RELATED [] synonym: "Glossopharyngeal ganglion" EXACT [] synonym: "petrosal ganglion" RELATED [] xref: FMA:53471 xref: TAO:0001301 xref: ZFA:0001301 is_a: UBERON:0001714 ! ganglion of cranial nerve is_a: UBERON:0003338 ! implied link automatically realized ! ganglion of peripheral nervous system relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0001702 name: eyelash alt_id: UBERON:FMA_53669-MA_0002702 def: "." [Wikipedia:Eyelash] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Eyelash" EXACT [] xref: FMA:53669 xref: GAID:73 xref: MA:0002702 xref: ncithesaurus:Eyelash xref: OpenCyc:Mx4rvVi41pwpEbGdrcN5Y29ycA is_a: UBERON:0001037 ! hair [Term] id: UBERON:0001703 name: neurocranium alt_id: UBERON:FMA_53672-ZFA_0001580 def: "Portion of the cranium which encloses the brain." [Wikipedia:Cranium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Brain Box" EXACT [] synonym: "brain box" EXACT [] synonym: "Neurocranium" EXACT [] xref: FMA:53672 xref: TAO:0001580 xref: ZFA:0001580 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0001704 name: viscerocranium alt_id: UBERON:FMA_53673-MA_0000318 comment: This class was created automatically from a combination of ontologies synonym: "facial bone" RELATED [] synonym: "Facial skeleton" EXACT [] synonym: "facial skeleton" EXACT [] synonym: "Viscerocranium" EXACT [] xref: EHDAA:8361 xref: FMA:53673 xref: HOG:0000315 xref: MA:0000318 is_a: UBERON:0000075 ! implied link automatically realized ! subdivision of skeleton intersection_of: UBERON:0000075 ! subdivision of skeleton intersection_of: part_of UBERON:0001456 ! face relationship: part_of UBERON:0002090 ! axial skeleton [Term] id: UBERON:0001705 name: nail alt_id: UBERON:FMA_54326-MA_0002703-MIAA_0000158 def: "a horn-like structure at the end of an animal's finger or toe." [Wikipedia:Nail_(anatomy)] comment: TODO: check claw vs nail subset: uberon_slim synonym: "claw" RELATED [] synonym: "Nail" EXACT [] synonym: "Nail plate" EXACT [] synonym: "nail plate" EXACT [] xref: EFO:0000956 xref: FMA:54326 xref: GAID:1320 xref: MA:0002703 xref: MAT:0000158 xref: MIAA:0000158 xref: ncithesaurus:Nail xref: OpenCyc:Mx4rvVjJv5wpEbGdrcN5Y29ycA xref: XAO:0003103 is_a: UBERON:0000026 ! appendage relationship: part_of UBERON:0002544 ! digit [Term] id: UBERON:0001706 name: nasal septum alt_id: UBERON:FMA_54375-MA_0000285 def: "." [Wikipedia:Nasal_septum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Nasal septum" EXACT [] xref: EHDAA:6809 xref: FMA:54375 xref: GAID:115 xref: HOG:0000017 xref: MA:0000285 xref: ncithesaurus:Nasal_Septum xref: OpenCyc:Mx4rv7e-k5wpEbGdrcN5Y29ycA is_a: UBERON:0003037 ! septum relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: UBERON:0001707 name: nasal cavity alt_id: UBERON:FMA_54378-MA_0000284-ZFA_0000130 def: "an indentation of the olfactory placode, and ends when the pits hollows out to form the nasopharynx." [Wikipedia:Nasal_cavity] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cavity of nose" EXACT [] synonym: "cavity of nose" EXACT [] synonym: "Nasal cavity" EXACT [] synonym: "nasal pit" RELATED [] synonym: "olfactory cavity" RELATED [] synonym: "olfactory pit" EXACT [] xref: AAO:0000314 xref: BTO:0002096 xref: EHDAA:4772 xref: EHDAA:6801 xref: FMA:54378 xref: GAID:350 xref: HOG:0000271 xref: MA:0000284 xref: ncithesaurus:Nasal_Cavity xref: TAO:0000130 xref: ZFA:0000130 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000004 ! olfactory apparatus relationship: part_of UBERON:0001557 ! upper respiratory tract [Term] id: UBERON:0001708 name: jaw alt_id: UBERON:FMA_54396-MA_0001905-ZFA_0001227 def: "Skeletal and cartilagenous elements of the first pharyngeal arch." [Wikipedia:Jaw, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Jaw" EXACT [] synonym: "jaw cartilage" RELATED [] synonym: "jaws" RELATED [] synonym: "mandibular arch" EXACT [] synonym: "oral jaw skeleton" RELATED [] synonym: "pharyngeal arch 1 skeleton" RELATED [] synonym: "visceral arch 1" RELATED [] xref: BTO:0001749 xref: FMA:54396 xref: GAID:214 xref: galen:Jaw xref: MA:0001905 xref: ncithesaurus:Jaw xref: OpenCyc:Mx4rvVjjEZwpEbGdrcN5Y29ycA xref: TAO:0001227 xref: ZFA:0001227 is_a: UBERON:0002539 ! pharyngeal arch relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0001709 name: upper jaw alt_id: UBERON:FMA_54397-MA_0001908-XAO_0003087-ZFA_0001272 def: "The dorsal portion of the first pharyngeal arch, comprising the upper jaw." [Wikipedia:Upper_jaw, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "dorsal mandibular arch" RELATED [] synonym: "dorsal visceral arch 2" RELATED [] synonym: "palatoquadrate arch" EXACT [] synonym: "Upper jaw" EXACT [] synonym: "upper pharyngeal jaws" RELATED [] xref: AAO:0000620 xref: EHDAA:8025 xref: FMA:54397 xref: HOG:0000454 xref: MA:0001908 xref: ncithesaurus:Upper_Jaw xref: TAO:0001272 xref: XAO:0003087 xref: ZFA:0001272 relationship: part_of UBERON:0001708 ! jaw [Term] id: UBERON:0001710 name: lower jaw alt_id: UBERON:FMA_54398-MA_0001906-XAO_0003084-ZFA_0001273 def: "The ventral portion of the first pharyngeal arch, comprising the lower jaw." [Wikipedia:Lower_jaw, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lower jaw" EXACT [] synonym: "mandible" RELATED [] synonym: "mandibular series" RELATED [] synonym: "ventral mandibular arch" EXACT [] xref: AAO:0000272 xref: EHDAA:7995 xref: FMA:54398 xref: HOG:0000453 xref: MA:0001906 xref: ncithesaurus:Lower_Jaw xref: TAO:0001273 xref: XAO:0003084 xref: ZFA:0001273 relationship: part_of UBERON:0001708 ! jaw [Term] id: UBERON:0001711 name: eyelid alt_id: UBERON:FMA_54437-MA_0000268 def: "." [Wikipedia:Eyelid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Blepharon" EXACT [] synonym: "blepharon" EXACT [] synonym: "Eyelid" EXACT [] synonym: "Palpebra" EXACT [] synonym: "palpebra" RELATED [] xref: BTO:0002241 xref: EHDAA:9037 xref: FMA:54437 xref: GAID:72 xref: HOG:0000016 xref: MA:0000268 xref: ncithesaurus:Eyelid xref: OpenCyc:Mx4rvVi4m5wpEbGdrcN5Y29ycA is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0000970 ! eye [Term] id: UBERON:0001712 name: upper eyelid alt_id: UBERON:FMA_54439-MA_0001267 def: "." [Wikipedia:Upper_eyelid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Superior eyelid" EXACT [] synonym: "superior eyelid" EXACT [] synonym: "Upper eyelid" EXACT [] xref: FMA:54439 xref: HOG:0000389 xref: MA:0001267 xref: ncithesaurus:Upper_Eyelid xref: OpenCyc:Mx4rvg4ohJwpEbGdrcN5Y29ycA is_a: UBERON:0001711 ! eyelid [Term] id: UBERON:0001713 name: lower eyelid alt_id: UBERON:FMA_54442-MA_0001263-XAO_0000007 def: "." [Wikipedia:Lower_eyelid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Inferior eyelid" EXACT [] synonym: "inferior eyelid" EXACT [] synonym: "Lower eyelid" EXACT [] xref: FMA:54442 xref: HOG:0000388 xref: MA:0001263 xref: ncithesaurus:Lower_Eyelid xref: OpenCyc:Mx4rvW6GtJwpEbGdrcN5Y29ycA xref: XAO:0000007 is_a: UBERON:0001711 ! eyelid is_a: UBERON:0003102 ! surface structure [Term] id: UBERON:0001714 name: ganglion of cranial nerve alt_id: UBERON:FMA_54502-MA_0000213 def: "." [Wikipedia:Cranial_nerve_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cranial ganglion/nerve" EXACT [] synonym: "Cranial nerve ganglion" EXACT [] synonym: "cranial nerve ganglion" EXACT [] synonym: "Cranial neural ganglion" EXACT [] synonym: "cranial neural ganglion" EXACT [] synonym: "Ganglion of cranial nerve" EXACT [] xref: FMA:54502 xref: MA:0000213 is_a: UBERON:0000045 ! ganglion is_a: UBERON:0003339 ! implied link automatically realized ! ganglion of central nervous system intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0001715 name: oculomotor nuclear complex alt_id: UBERON:FMA_54510-ZFA_0000553 def: "." [Wikipedia:Nucleus_of_oculomotor_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "motor nucleus III" RELATED [] synonym: "nIII" RELATED [] synonym: "Nucleus of oculomotor nerve" EXACT [] synonym: "nucleus of oculomotor nerve" EXACT [] synonym: "Nucleus of third cranial nerve" EXACT [] synonym: "nucleus of third cranial nerve" EXACT [] synonym: "Oculomotor nuclear complex" EXACT [] synonym: "Oculomotor nucleus" EXACT [] synonym: "oculomotor nucleus" EXACT [] synonym: "Third cranial nerve nucleus" EXACT [] synonym: "third cranial nerve nucleus" EXACT [] xref: EFO:0002468 xref: FMA:54510 xref: ncithesaurus:Oculomotor_Nucleus xref: NIF_GrossAnatomy:birnlex_1240 xref: TAO:0000553 xref: ZFA:0000553 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001716 name: palate alt_id: UBERON:FMA_54549-FMA_55023-MA_0002476-MA_0002477-MIAA_0000161 def: "Partition that separates the nasal and oral cavities[GO]." [GO:0060021, Wikipedia:Palate] comment: The soft palate is movable, consisting of muscle fibers sheathed in mucous membrane. It is responsible for closing off the nasal passages during the act of swallowing, and also for closing off the airway. During sneezing, it protects the nasal passage by diverting a portion of the excreted substance to the mouth. subset: uberon_slim synonym: "oral roof" EXACT [] synonym: "Palate" EXACT [] synonym: "roof of mouth" EXACT [] xref: BTO:0001779 xref: FMA:54549 xref: GAID:152 xref: MA:0002476 xref: ncithesaurus:Palate is_a: UBERON:0000061 ! anatomical structure relationship: adjacent_to UBERON:0000167 ! oral cavity relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0001717 name: spinal nucleus of trigeminal nerve alt_id: UBERON:FMA_54565-MA_0001053 def: "." [Wikipedia:Spinal_trigeminal_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Spinal nucleus of cranial nerve V" EXACT [] synonym: "spinal nucleus of cranial nerve v" EXACT [] synonym: "Spinal nucleus of trigeminal nerve" EXACT [] synonym: "spinal trigeminal nucleus" EXACT [] synonym: "Trigeminal nerve spinal tract nucleus" EXACT [] synonym: "trigeminal nerve spinal tract nucleus" EXACT [] synonym: "Trigeminal spinal nucleus" EXACT [] synonym: "trigeminal spinal nucleus" EXACT [] synonym: "trigeminal V spinal sensory nucleus" EXACT [] synonym: "trigeminal v spinal sensory nucleus" EXACT [] xref: FMA:54565 xref: GAID:605 xref: MA:0001053 is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001718 name: mesencephalic nucleus of trigeminal nerve alt_id: UBERON:FMA_54568-ZFA_0000312 def: "." [Wikipedia:Mesencephalic_nucleus_of_trigeminal_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Mesencephalic nucleus of trigeminal nerve" EXACT [] synonym: "Mesencephalic trigeminal nucleus" EXACT [] synonym: "mesencephalic trigeminal nucleus" EXACT [] synonym: "Nucleus of mesencephalic root of V" EXACT [] synonym: "nucleus of mesencephalic root of v" EXACT [] synonym: "Trigeminal nerve mesencepahlic nucleus" EXACT [] synonym: "trigeminal nerve mesencepahlic nucleus" EXACT [] xref: FMA:54568 xref: NIF_GrossAnatomy:birnlex_1010 xref: TAO:0000312 xref: ZFA:0000312 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001719 name: nucleus ambiguus alt_id: UBERON:FMA_54588-MA_0001050 def: "." [Wikipedia:Nucleus_ambiguus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ambiguus nucleus" EXACT [] synonym: "ambiguus nucleus" EXACT [] synonym: "Nucleus ambiguus" EXACT [] xref: FMA:54588 xref: MA:0001050 xref: ncithesaurus:Nucleus_Ambiguus xref: NIF_GrossAnatomy:birnlex_2650 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001720 name: cochlear nucleus alt_id: UBERON:FMA_54603-ZFA_0001638 def: "." [Wikipedia:Cochlear_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cochlear nucleus" EXACT [] synonym: "Cochlear nucleus of acoustic nerve" EXACT [] synonym: "cochlear nucleus of acoustic nerve" EXACT [] synonym: "Cochlear nucleus of eighth cranial nerve" EXACT [] synonym: "cochlear nucleus of eighth cranial nerve" EXACT [] synonym: "Nucleus of cochlear nerve" EXACT [] synonym: "nucleus of cochlear nerve" EXACT [] synonym: "statoacoustic (VIII) nucleus" EXACT [] synonym: "statoacoustic (viii) nucleus" EXACT [] synonym: "vestibulocochlear nucleus" RELATED [] xref: FMA:54603 xref: GAID:601 xref: ncithesaurus:Cochlear_Nucleus xref: ZFA:0001638 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0001721 name: inferior vestibular nucleus alt_id: UBERON:FMA_54608-MA_0001054 def: "." [Wikipedia:Inferior_vestibular_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Descending vestibular nucleus" EXACT [] synonym: "descending vestibular nucleus" EXACT [] synonym: "Inferior vestibular nucleus" EXACT [] synonym: "Spinal vestibular nucleus" EXACT [] synonym: "spinal vestibular nucleus" EXACT [] xref: FMA:54608 xref: MA:0001054 xref: ncithesaurus:Spinal_Vestibular_Nucleus is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001722 name: medial vestibular nucleus alt_id: UBERON:FMA_54611-MA_0001048 def: "." [Wikipedia:Medial_vestibular_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Chief vestibular nucleus" EXACT [] synonym: "chief vestibular nucleus" EXACT [] synonym: "Dorsal vestibular nucleus" EXACT [] synonym: "dorsal vestibular nucleus" EXACT [] synonym: "Medial vestibular nucleus" EXACT [] synonym: "Nucleus of Schwalbe" EXACT [] synonym: "nucleus of schwalbe" EXACT [] synonym: "Principal vestibular nucleus" EXACT [] synonym: "principal vestibular nucleus" EXACT [] synonym: "Schwalbe's nucleus" EXACT [] synonym: "schwalbe's nucleus" EXACT [] synonym: "Triangular nucleus" EXACT [] synonym: "triangular nucleus" EXACT [] xref: FMA:54611 xref: MA:0001048 xref: ncithesaurus:Medial_Vestibular_Nucleus is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001723 name: tongue alt_id: UBERON:FMA_54640-MA_0000347-MIAA_0000040-XAO_0000446 def: "The tongue is the movable, muscular organ on the floor of the mouth of most vertebrates, in man other mammals is the principal organ of taste, aids in the prehension of food, in swallowing, and in modifying the voice as in speech[GO]." [GO:0043586, Wikipedia:Tongue] subset: uberon_slim synonym: "Tongue" EXACT [] xref: BTO:0001385 xref: EFO:0000833 xref: EHDAA:9144 xref: FMA:54640 xref: GAID:816 xref: HOG:0000419 xref: MA:0000347 xref: MAT:0000040 xref: MIAA:0000040 xref: ncithesaurus:Tongue xref: OpenCyc:Mx4rvVjmJ5wpEbGdrcN5Y29ycA_53KXLq9EdqAAAACs6hnmQ xref: XAO:0000446 is_a: UBERON:0000062 ! organ is_a: UBERON:0003212 ! implied link automatically realized ! gustatory organ relationship: develops_from UBERON:0002539 ! pharyngeal arch relationship: part_of UBERON:0001033 ! gustatory system [Term] id: UBERON:0001724 name: sphenoidal sinus alt_id: UBERON:FMA_54683-MA_0001795 def: "." [Wikipedia:Sphenoidal_sinus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "sphenoid sinus" EXACT [] synonym: "Sphenoidal sinus" EXACT [] xref: FMA:54683 xref: GAID:359 xref: MA:0001795 xref: ncithesaurus:Sphenoid_Sinus is_a: UBERON:0001825 ! paranasal sinus [Term] id: UBERON:0001725 name: cranial synchondrosis alt_id: UBERON:FMA_54816-MA_0001502 comment: This class was created automatically from a combination of ontologies synonym: "Cranial synchondrosis" EXACT [] xref: FMA:54816 xref: MA:0001502 is_a: UBERON:0002215 ! synchondrosis intersection_of: UBERON:0002215 ! synchondrosis intersection_of: part_of UBERON:0000032 ! cranial structure [Term] id: UBERON:0001726 name: papilla of tongue alt_id: UBERON:FMA_54819-MA_0001593 comment: This class was created automatically from a combination of ontologies synonym: "Lingual papilla" EXACT [] synonym: "lingual papilla" EXACT [] synonym: "Papilla of tongue" EXACT [] synonym: "Tongue papilla" EXACT [] synonym: "tongue papilla" EXACT [] xref: FMA:54819 xref: MA:0001593 xref: NIF_GrossAnatomy:birnlex_4102 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0001727 name: taste bud alt_id: UBERON:FMA_54825-MA_0001591-XAO_0000445-ZFA_0001074 def: "." [Wikipedia:Taste_bud] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Taste bud" EXACT [] synonym: "taste buds" RELATED [] xref: BTO:0000989 xref: FMA:54825 xref: GAID:815 xref: HOG:0000130 xref: MA:0001591 xref: NIF_GrossAnatomy:birnlex_4101 xref: OpenCyc:Mx4rvVjan5wpEbGdrcN5Y29ycA xref: TAO:0001074 xref: XAO:0000445 xref: ZFA:0001074 is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0001723 ! tongue relationship: develops_from UBERON:0001731 ! cavity of pharynx relationship: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0001728 name: nasopharynx alt_id: UBERON:FMA_54878-MA_0000443 def: "." [Wikipedia:Nasopharynx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Nasal part of pharynx" EXACT [] synonym: "nasal part of pharynx" EXACT [] synonym: "Nasopharynx" EXACT [] synonym: "Rhinopharynx" EXACT [] synonym: "rhinopharynx" EXACT [] xref: BTO:0000662 xref: EHDAA:7086 xref: FMA:54878 xref: GAID:339 xref: HOG:0000375 xref: MA:0000443 xref: MAT:0000447 xref: ncithesaurus:Nasopharynx is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001042 ! pharynx relationship: part_of UBERON:0001557 ! upper respiratory tract [Term] id: UBERON:0001729 name: oropharynx alt_id: UBERON:FMA_54879-MA_0000351 def: "." [Wikipedia:Oropharynx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Oral part of pharynx" EXACT [] synonym: "oral part of pharynx" EXACT [] synonym: "Oropharynx" EXACT [] xref: EFO:0001976 xref: FMA:54879 xref: GAID:340 xref: HOG:0000457 xref: MA:0000351 xref: MAT:0000446 xref: ncithesaurus:Oropharynx is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001042 ! pharynx [Term] id: UBERON:0001730 name: extrinsic ligament of larynx alt_id: UBERON:FMA_54921-MA_0001756 comment: This class was created automatically from a combination of ontologies synonym: "Extrinsic ligament of larynx" EXACT [] synonym: "laryngeal extrinsic ligament" EXACT [] xref: FMA:54921 xref: MA:0001756 is_a: UBERON:0001743 ! ligament of larynx [Term] id: UBERON:0001731 name: cavity of pharynx alt_id: UBERON:FMA_54935-XAO_0000105 comment: This class was created automatically from a combination of ontologies synonym: "Cavity of pharynx" EXACT [] synonym: "Lumen of pharynx" EXACT [] synonym: "lumen of pharynx" EXACT [] synonym: "Pharyngeal cavity" EXACT [] synonym: "pharyngeal cavity" EXACT [] xref: BTO:0002097 xref: FMA:54935 xref: XAO:0000105 is_a: UBERON:0002553 ! anatomical cavity relationship: develops_from UBERON:0001041 ! foregut relationship: part_of UBERON:0001042 ! pharynx [Term] id: UBERON:0001732 name: pharyngeal tonsil alt_id: UBERON:FMA_54970-MA_0000774 def: "." [Wikipedia:Pharyngeal_tonsil] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Adenoid" EXACT [] synonym: "adenoid" EXACT [] synonym: "Nasopharyngeal tonsil" EXACT [] synonym: "nasopharyngeal tonsil" EXACT [] synonym: "Pharyngeal tonsil" EXACT [] synonym: "Tonsil of Luschka" EXACT [] synonym: "tonsil of luschka" EXACT [] xref: BTO:0000777 xref: EFO:0001401 xref: FMA:54970 xref: GAID:1288 xref: MA:0000774 xref: ncithesaurus:Pharyngeal_Tonsil is_a: UBERON:0002372 ! tonsil intersection_of: UBERON:0002372 ! tonsil intersection_of: part_of UBERON:0001042 ! pharynx [Term] id: UBERON:0001733 name: soft palate alt_id: UBERON:FMA_55021-MA_0002412-MIAA_0000039 def: "soft tissue constituting the back of the roof of the mouth. The soft palate is distinguished from the hard palate at the front of the mouth in that it does not contain bone[WP]. The soft palate is the posterior portion of the palate extending from the posterior edge of the hard palate[GO]." [GO:0060023, Wikipedia:Soft_palate] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "muscular palate" RELATED [Wikipedia:Soft_palate] synonym: "velum" RELATED [Wikipedia:Soft_palate] xref: FMA:55021 xref: GAID:1284 xref: MA:0002412 xref: MAT:0000039 xref: MIAA:0000039 xref: ncithesaurus:Soft_Palate is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0001716 ! palate [Term] id: UBERON:0001734 name: uvula alt_id: UBERON:FMA_55022-MA_0001006 def: "Conic projection from the posterior edge of the middle of the soft palate, composed of connective tissue containing a number of racemose glands, and some muscular fibers. The uvula, hanging from the end of the soft palate, is responsible for the sound of snoring. Touching the uvula or the end of the soft palate evokes a strong gag reflex in most people." [Wikipedia:Uvula] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cerebellum lobule IX" EXACT [] synonym: "cerebellum lobule ix" EXACT [] synonym: "Uvula" EXACT [] synonym: "Uvula of palate" EXACT [] synonym: "uvula of palate" EXACT [] xref: EFO:0001386 xref: FMA:55022 xref: GAID:1285 xref: MA:0001006 xref: ncithesaurus:Uvula is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0001735 name: tonsillar ring alt_id: UBERON:FMA_55070-MA_0000752 def: "lymphoid tissue ring located in the pharynx and to the back of the oral cavity." [Wikipedia:Waldeyer's_ring] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "oropharyngeal lymphoid tissue" EXACT [] synonym: "Pharyngeal lymphatic ring" EXACT [] synonym: "pharyngeal lymphatic ring" EXACT [] synonym: "Pharyngeal lymphoid ring" EXACT [] synonym: "pharyngeal lymphoid ring" EXACT [] synonym: "Tonsillar ring" EXACT [] synonym: "Waldeyer's ring" EXACT [] synonym: "waldeyer's ring" RELATED [] synonym: "Waldeyer's tonsillar ring" EXACT [] synonym: "waldeyer's tonsillar ring" EXACT [] xref: FMA:55070 xref: MA:0000752 xref: ncithesaurus:Waldeyers_Tonsillar_Ring is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue relationship: part_of UBERON:0001042 ! pharynx [Term] id: UBERON:0001736 name: submandibular gland alt_id: UBERON:FMA_55093-MA_0001589 def: "." [Wikipedia:Submandibular_gland] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Submandibular gland" EXACT [] synonym: "Submaxillary gland" EXACT [] synonym: "submaxillary gland" RELATED [] xref: BTO:0001316 xref: EFO:0001387 xref: FMA:55093 xref: GAID:942 xref: HOG:0000364 xref: MA:0001589 xref: ncithesaurus:Submandibular_Gland is_a: UBERON:0001829 ! major salivary gland [Term] id: UBERON:0001737 name: larynx alt_id: UBERON:FMA_55097-MA_0000414-MIAA_0000187-XAO_0003081 def: "Heterogeneous cluster that connects the pharynx to the tracheobronchial tree. Examples: There is only one larynx." [Wikipedia:Larynx] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Larynx" EXACT [] xref: AAO:0000268 xref: BTO:0001208 xref: EFO:0000838 xref: FMA:55097 xref: GAID:108 xref: galen:Larynx xref: HOG:0001279 xref: MA:0000414 xref: MAT:0000187 xref: MIAA:0000187 xref: ncithesaurus:Larynx xref: OpenCyc:Mx4rvViOnZwpEbGdrcN5Y29ycA xref: XAO:0003081 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001557 ! upper respiratory tract [Term] id: UBERON:0001738 name: thyroid cartilage alt_id: UBERON:FMA_55099-MA_0001764 def: "." [Wikipedia:Thyroid_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Thyroid cartilage" EXACT [] xref: BTO:0003655 xref: FMA:55099 xref: GAID:112 xref: HOG:0001365 xref: MA:0001764 xref: ncithesaurus:Thyroid_Cartilage is_a: UBERON:0001739 ! laryngeal cartilage [Term] id: UBERON:0001739 name: laryngeal cartilage alt_id: UBERON:FMA_55108-MA_0001758 comment: This class was created automatically from a combination of ontologies synonym: "Cartilage of larynx" EXACT [] synonym: "cartilage of larynx" EXACT [] synonym: "Laryngeal cartilage" EXACT [] synonym: "larynx cartilage" EXACT [] xref: BTO:0003660 xref: EHDAA:8157 xref: FMA:55108 xref: GAID:107 xref: MA:0001758 xref: ncithesaurus:Laryngeal_Cartilage is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002236 ! costal cartilage is_a: UBERON:0003406 ! implied link automatically realized ! cartilage of respiratory system intersection_of: UBERON:0002418 ! cartilage intersection_of: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0001740 name: arytenoid cartilage alt_id: UBERON:FMA_55109-MA_0001759 def: "." [Wikipedia:Arytenoid_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Arytenoid cartilage" EXACT [] xref: AAO:0000674 xref: FMA:55109 xref: GAID:109 xref: MA:0001759 xref: ncithesaurus:Arytenoid_Cartilage is_a: UBERON:0001739 ! laryngeal cartilage [Term] id: UBERON:0001741 name: corniculate cartilage alt_id: UBERON:FMA_55110-MA_0001885 def: "." [Wikipedia:Corniculate_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cartilage of Santorini" EXACT [] synonym: "cartilage of santorini" EXACT [] synonym: "Corniculate cartilage" EXACT [] synonym: "Santorini's cartilage" EXACT [] synonym: "santorini's cartilage" EXACT [] xref: FMA:55110 xref: MA:0001885 xref: ncithesaurus:Corniculate_Cartilage is_a: UBERON:0001739 ! laryngeal cartilage is_a: UBERON:0001996 ! elastic cartilage [Term] id: UBERON:0001742 name: epiglottic cartilage alt_id: UBERON:FMA_55112-MA_0001763 def: "." [Wikipedia:Epiglottic_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Epiglottic cartilage" EXACT [] xref: FMA:55112 xref: MA:0001763 xref: ncithesaurus:Epiglottic_Cartilage is_a: UBERON:0001739 ! laryngeal cartilage is_a: UBERON:0001996 ! elastic cartilage [Term] id: UBERON:0001743 name: ligament of larynx alt_id: UBERON:FMA_55131-MA_0001755 comment: This class was created automatically from a combination of ontologies synonym: "Laryngeal ligament" EXACT [] synonym: "laryngeal ligament" EXACT [] synonym: "larynx ligament" EXACT [] synonym: "Ligament of larynx" EXACT [] xref: FMA:55131 xref: MA:0001755 xref: ncithesaurus:Laryngeal_Ligament is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000211 ! ligament is_a: UBERON:0003583 ! implied link automatically realized ! larynx connective tissue intersection_of: UBERON:0000211 ! ligament intersection_of: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0001744 name: lymphoid tissue alt_id: UBERON:FMA_55220-MA_0002436 def: "Portion of connective tissue with various types of white blood cells enmeshed in it, most numerous being the lymphocytes[WP]." [Wikipedia:Lymphoid_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "lymphatic tissue" EXACT [] synonym: "lymphocytic tissue" EXACT [] xref: BTO:0000753 xref: FMA:55220 xref: GAID:342 xref: MA:0002436 xref: ncithesaurus:Lymphoid_Tissue is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0002193 ! hemolymphoid system [Term] id: UBERON:0001745 name: secondary nodular lymphoid tissue alt_id: UBERON:FMA_55224-MA_0000744 def: "sites within lymph nodes in peripheral lymph tissues where intense mature B lymphocytes, otherwise known as Centrocytes rapidly proliferate, differentiate, mutate through somatic hypermutation and class switch during antibody responses. Germinal centers are an important part of the B-cell humoral immune response. They develop dynamically after the activation of B-cells by T-dependent antigen. Histologically, the GCs describe microscopically distinguishable parts in lymphoid tissues[WP]. A germinal center is a specialized microenvironment formed when activated B cells enter lymphoid follicles. Germinal centers are the foci for B cell proliferation and somatic hypermutation[GO]." [GO:0002467, Wikipedia:Germinal_center] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "germinal center" EXACT [] synonym: "lymph node germinal center" RELATED [] synonym: "lymph node secondary follicle" EXACT [] synonym: "Peripheral lymphoid tissue" EXACT [] synonym: "peripheral lymphoid tissue" EXACT [] synonym: "Secondary lymphoid nodule" EXACT [] synonym: "secondary lymphoid nodule" EXACT [] synonym: "Secondary lymphoid tissue" EXACT [] synonym: "secondary lymphoid tissue" EXACT [] synonym: "Secondary nodular lymphoid tissue" EXACT [] xref: BTO:0003671 xref: FMA:55224 xref: GAID:946 xref: MA:0000744 xref: ncithesaurus:Germinal_Center is_a: UBERON:0001744 ! lymphoid tissue relationship: part_of UBERON:0000029 ! lymph node [Term] id: UBERON:0001746 name: fibrous capsule of thyroid gland alt_id: UBERON:FMA_55513-MA_0002675 comment: This class was created automatically from a combination of ontologies synonym: "Fibrous capsule of thyroid gland" EXACT [] synonym: "Thyroid capsule" EXACT [] synonym: "thyroid capsule" EXACT [] synonym: "thyroid gland capsule" EXACT [] xref: FMA:55513 xref: MA:0002675 xref: ncithesaurus:Thyroid_Gland_Capsule is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002046 ! thyroid follicle [Term] id: UBERON:0001747 name: parenchyma of thyroid gland alt_id: UBERON:FMA_55515-MA_0000730 comment: This class was created automatically from a combination of ontologies synonym: "Parenchyma of thyroid gland" EXACT [] synonym: "Thyroid gland parenchyma" EXACT [] synonym: "thyroid gland parenchyma" EXACT [] xref: FMA:55515 xref: MA:0000730 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0002046 ! thyroid follicle relationship: part_of UBERON:0002046 ! thyroid follicle [Term] id: UBERON:0001748 name: capsule of parathyroid gland alt_id: UBERON:FMA_55566-MA_0002676 comment: This class was created automatically from a combination of ontologies synonym: "Capsule of parathyroid gland" EXACT [] synonym: "Parathyroid gland capsule" EXACT [] synonym: "parathyroid gland capsule" EXACT [] xref: FMA:55566 xref: MA:0002676 xref: ncithesaurus:Parathyroid_Gland_Capsule is_a: UBERON:0003893 ! capsule intersection_of: UBERON:0003893 ! capsule intersection_of: surrounds UBERON:0001132 ! parathyroid gland relationship: surrounds UBERON:0001132 ! parathyroid gland [Term] id: UBERON:0001749 name: parenchyma of parathyroid gland alt_id: UBERON:FMA_55569-MA_0002677 comment: This class was created automatically from a combination of ontologies synonym: "Parathyroid gland parenchyma" EXACT [] synonym: "parathyroid gland parenchyma" EXACT [] synonym: "Parenchyma of parathyroid gland" EXACT [] xref: FMA:55569 xref: MA:0002677 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000353 ! implied link automatically realized ! parenchyma intersection_of: UBERON:0000353 ! parenchyma intersection_of: part_of UBERON:0001132 ! parathyroid gland relationship: part_of UBERON:0001132 ! parathyroid gland [Term] id: UBERON:0001750 name: lacrimal apparatus alt_id: UBERON:FMA_55605-MA_0000274 def: "." [Wikipedia:Lacrimal_apparatus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lacrimal apparatus" EXACT [] xref: FMA:55605 xref: GAID:901 xref: MA:0000274 xref: ncithesaurus:Lacrimal_Apparatus is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0000970 ! eye [Term] id: UBERON:0001751 name: dentine alt_id: UBERON:FMA_55628-MA_0002542-ZFA_0005143 def: "Substance of tooth produced by odontoblasts; surrounds the pulp of the tooth and is subjacent to enamel and cement[FMA]. Mineralized collagen containing substance that forms the tooth structure[ZFA]. a calcified tissue of the body, and along with enamel, cementum, and pulp is one of the four major components of teeth[WP]." [Wikipedia:Dentin, ZFIN:curator] comment: Dentine is found in the fossil record as early as the late Cambrian, in fish, where it may have had a role in electrochemical sensing of the environment as well as assisting in defense[WP]. subset: uberon_slim synonym: "dentin" EXACT [] synonym: "dentine of tooth" EXACT [] synonym: "predentin" NARROW [GO:0070468] xref: BTO:0003453 xref: FMA:55628 xref: GAID:1272 xref: MA:0002542 xref: ncithesaurus:Dentin xref: TAO:0005143 xref: ZFA:0005143 is_a: UBERON:0001973 ! substance of tooth relationship: develops_from UBERON:0000924 ! ectoderm [Term] id: UBERON:0001752 name: enamel alt_id: UBERON:FMA_55629-MA_0002543-ZFA_0005142 def: "A dentine-like hypermineralized substance that covers the tooth tip. Enamel's primary mineral is hydroxylapatite, which is a crystalline calcium phosphate. Unlike dentin and bone, enamel does not contain collagen. Instead, it has two unique classes of proteins called amelogenins and enamelins[WP]." [Wikipedia:Enamel, ZFIN:curator] comment: Tooth enamel is also found in the dermal denticles of sharks UBERON:0000041. For the most part, research has shown that formation in animals is almost identical to formation in humans. The enamel organ, including the dental papilla, and ameloblasts function similarly.[53] The variations of enamel that are present are infrequent but sometimes important. Differences exist, certainly, in the morphology, number, and types of teeth among animals. subset: uberon_slim synonym: "Enamel" EXACT [] synonym: "Enamel of tooth" EXACT [] synonym: "enamel of tooth" EXACT [] synonym: "enameloid" EXACT [] synonym: "tooth enamel" EXACT [] xref: BTO:0001844 xref: FMA:55629 xref: MA:0002543 xref: ncithesaurus:Enamel xref: TAO:0005142 xref: ZFA:0005142 is_a: UBERON:0001973 ! substance of tooth [Term] id: UBERON:0001753 name: cementum alt_id: UBERON:FMA_55630-MA_0002541 def: "Substance of tooth produced by cementoblasts; surrounds the dentine of the root of the tooth[FMA]. a specialized calcified substance covering the root of a tooth. Cementum is excreted by cells called cementoblasts within the root of the tooth and is thickest at the root apex. Its coloration is yellowish and it is softer than enamel and dentin due to being less mineralized[WP]." [Wikipedia:Cementum] comment: This class was created automatically from a combination of ontologies synonym: "Cement" EXACT [] synonym: "Cement of tooth" EXACT [] synonym: "cement of tooth" EXACT [] synonym: "cementum" EXACT [] synonym: "Cementum of tooth" EXACT [] synonym: "cementum of tooth" EXACT [] xref: FMA:55630 xref: MA:0002541 xref: ncithesaurus:Cementum is_a: UBERON:0001973 ! substance of tooth [Term] id: UBERON:0001754 name: dental pulp alt_id: UBERON:FMA_55631-MA_0001599 def: "the part in the center of a tooth made up of living soft tissue and cells called odontoblasts[WP]." [Wikipedia:Dental_pulp] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Dental pulp" EXACT [] synonym: "Pulp of tooth" EXACT [] synonym: "pulp of tooth" EXACT [] xref: BTO:0000339 xref: FMA:55631 xref: GAID:1270 xref: HOG:0001469 xref: MA:0001599 xref: ncithesaurus:Dental_Pulp is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0001755 name: stylohyal alt_id: UBERON:FMA_56472-ZFA_0001511 def: "The interhyal is a small rod-like element that connects the ventral and dorsal parts of the hyoid arch. It articulates laterally with the posterior end of the epihyal and medially at the cartilaginous junction between the hyomandibula and the symplectic. It remains cartilaginous in adult zebrafish and other cypriniforms." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "Distal part of styloid process" EXACT [] synonym: "distal part of styloid process" EXACT [] synonym: "interhyal bone" RELATED [] synonym: "interhyal cartilage" EXACT [] synonym: "Stylohyal" EXACT [] xref: FMA:56472 xref: TAO:0001511 xref: ZFA:0001511 is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0001756 name: middle ear alt_id: UBERON:FMA_56513-MA_0000253-MIAA_0000146-XAO_0000191 def: "The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window)[GO]." [GO:0042474, Wikipedia:Middle_ear] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Middle ear" EXACT [] synonym: "tympanic cavity" RELATED [] xref: BTO:0002099 xref: EHDAA:5693 xref: FMA:56513 xref: GAID:165 xref: HOG:0000312 xref: MA:0000253 xref: MAT:0000146 xref: MIAA:0000146 xref: ncithesaurus:Middle_Ear xref: NIF_GrossAnatomy:birnlex_1695 xref: OpenCyc:Mx4rvbw1j5wpEbGdrcN5Y29ycA xref: XAO:0000191 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0001757 name: pinna alt_id: UBERON:FMA_56580-MA_0000259 def: "Visible part of the ear that resides outside of the head. The purpose of the pinna is to collect sound. It does so by acting as a funnel, amplifying the sound and directing it to the ear canal. While reflecting from the pinna, sound also goes through a filtering process which adds directional information to the sound (see sound localization, head-related transfer function, pinna notch). The filtering effect of the human pinna preferentially selects sounds in the frequency range of human speech. In various species, the pinna can also signal mood and radiate heat." [Wikipedia:Pinna_(anatomy)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Auricle" EXACT [] synonym: "auricle" EXACT [] synonym: "Auricle of ear" EXACT [] synonym: "auricle of ear" EXACT [] synonym: "Auricle of external ear" EXACT [] synonym: "auricle of external ear" EXACT [] synonym: "auricula" EXACT [Wikipedia:Auricula] synonym: "Auricula (Auris externa)" EXACT [] synonym: "auricula (auris externa)" EXACT [] synonym: "Pinna" EXACT [] synonym: "Pinna of ear" EXACT [] synonym: "pinna of ear" EXACT [] xref: FMA:56580 xref: galen:Auricle xref: HOG:0000460 xref: MA:0000259 xref: ncithesaurus:Auricle is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0001758 name: periodontium alt_id: UBERON:FMA_56665-MA_0002467 def: "Skeletal ligament (organ) that connects a tooth to the maxilla or mandible." [Wikipedia:Periodontium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Periodontal ligament" EXACT [] synonym: "periodontal ligament" EXACT [] synonym: "Periodontal membrane" EXACT [] synonym: "periodontal membrane" RELATED [] synonym: "Periodontium" EXACT [] xref: BTO:0001020 xref: BTO:0001021 xref: FMA:56665 xref: GAID:1259 xref: GAID:216 xref: MA:0002467 xref: ncithesaurus:Periodontium is_a: UBERON:0000211 ! ligament relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0001759 name: vagus nerve alt_id: UBERON:FMA_5731-MA_0001106-XAO_0003097-ZFA_0000453 def: "Cranial nerve that branches into the lateral (to body sense organs) and the intestino-accessorial (to the skin, muscles of shoulder, hyoid, larynx, gut, lungs, and heart)." [ISBN:0471209627, Wikipedia:Vagus_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "CN-X" RELATED [] synonym: "cranial nerve X" RELATED [] synonym: "Tenth cranial nerve" EXACT [] synonym: "tenth cranial nerve" EXACT [] synonym: "vagal nerve" RELATED [] synonym: "Vagus" EXACT [] synonym: "vagus" EXACT [] synonym: "Vagus nerve" EXACT [] synonym: "Vagus nerve [X]" EXACT [] synonym: "vagus nerve [x]" EXACT [] synonym: "Vagus nerve tree" EXACT [] synonym: "vagus nerve tree" EXACT [] synonym: "vagus X nerve" EXACT [] synonym: "vagus x nerve" EXACT [] xref: BTO:0003472 xref: EFO:0002549 xref: FMA:5731 xref: GAID:721 xref: HOG:0000737 xref: MA:0001106 xref: ncithesaurus:Vagus_Nerve xref: NIF_GrossAnatomy:birnlex_801 xref: TAO:0000453 xref: XAO:0003097 xref: ZFA:0000453 is_a: UBERON:0001785 ! cranial nerve relationship: part_of UBERON:0001033 ! gustatory system [Term] id: UBERON:0001760 name: frontal sinus alt_id: UBERON:FMA_57417-MA_0001793 def: "." [Wikipedia:Frontal_sinus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Frontal sinus" EXACT [] xref: FMA:57417 xref: GAID:357 xref: MA:0001793 xref: ncithesaurus:Frontal_Sinus is_a: UBERON:0001825 ! paranasal sinus [Term] id: UBERON:0001761 name: foramen caecum alt_id: UBERON:FMA_57443-MA_0000725 def: "." [Wikipedia:Foramen_caecum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Foramen caecum" EXACT [] xref: EHDAA:2150 xref: EHDAA:2977 xref: FMA:57443 xref: HOG:0000826 xref: MA:0000725 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0001762 name: nasal concha alt_id: UBERON:FMA_57456-MA_0000286 def: "." [Wikipedia:Nasal_concha] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Nasal concha" EXACT [] synonym: "Nasal concha of ethmoid bone" EXACT [] synonym: "nasal concha of ethmoid bone" EXACT [] synonym: "Nasal turbinate" EXACT [] synonym: "nasal turbinate" EXACT [] synonym: "Turbinate" EXACT [] synonym: "turbinate" EXACT [] xref: FMA:57456 xref: GAID:224 xref: MA:0000286 xref: ncithesaurus:Nasal_Turbinate xref: OpenCyc:Mx4rv07bVJwpEbGdrcN5Y29ycA is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002204 ! musculoskeletal system [Term] id: UBERON:0001763 name: dental papilla alt_id: UBERON:FMA_57662-MA_0001598-ZFA_0005140 def: "Tissue of the developing tooth. It is composed of pre-odontoblast and undiffentiated mesnchyme cells and connects to the basal lamina." [Wikipedia:Dental_papilla, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Dental papilla" EXACT [] synonym: "pharyngeal tooth mesenchyme" RELATED [] synonym: "tooth mesenchyme" RELATED [] xref: BTO:0001839 xref: FMA:57662 xref: GAID:1277 xref: MA:0001598 xref: TAO:0005140 xref: ZFA:0005140 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000479 ! portion of tissue relationship: develops_from UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0001828 ! gingiva [Term] id: UBERON:0001764 name: maxillary sinus alt_id: UBERON:FMA_57715-MA_0001794 def: "." [Wikipedia:Maxillary_sinus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Antrum of Highmore" EXACT [] synonym: "antrum of highmore" EXACT [] synonym: "Maxillary sinus" EXACT [] xref: FMA:57715 xref: GAID:358 xref: MA:0001794 xref: ncithesaurus:Maxillary_Sinus is_a: UBERON:0001825 ! paranasal sinus [Term] id: UBERON:0001765 name: lactiferous duct alt_id: UBERON:FMA_58006-MA_0000791 def: "Ppithelial tube that transports milk[GO]." [GO:0060603, Wikipedia:Lactiferous_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "mammary duct" EXACT [GO:0060603] synonym: "mammary gland duct" EXACT [] xref: BTO:0002845 xref: FMA:58006 xref: MA:0000791 xref: ncithesaurus:Lactiferous_Duct is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0001911 ! lactiferous gland [Term] id: UBERON:0001766 name: anterior chamber of eyeball alt_id: UBERON:FMA_58078-MA_0000262 comment: This class was created automatically from a combination of ontologies synonym: "Anterior chamber of eye" EXACT [] synonym: "anterior chamber of eye" EXACT [] synonym: "Anterior chamber of eyeball" EXACT [] synonym: "Camera anterior" EXACT [] synonym: "camera anterior" EXACT [] synonym: "eye anterior chamber" EXACT [] xref: FMA:58078 xref: HOG:0001431 xref: MA:0000262 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0001767 name: posterior chamber of eyeball alt_id: UBERON:FMA_58080-MA_0002460 comment: This class was created automatically from a combination of ontologies synonym: "Camera posterior" EXACT [] synonym: "camera posterior" EXACT [] synonym: "eye posterior chamber" EXACT [] synonym: "Posterior chamber of eye" EXACT [] synonym: "posterior chamber of eye" EXACT [] synonym: "Posterior chamber of eyeball" EXACT [] xref: FMA:58080 xref: MA:0002460 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0001768 name: vascular layer of eyeball alt_id: UBERON:FMA_58103-MA_0002480 def: "." [Wikipedia:Uvea] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Tunica vasculosa of eyeball" EXACT [] synonym: "tunica vasculosa of eyeball" EXACT [] synonym: "Uvea" EXACT [] synonym: "uvea" EXACT [] synonym: "Uveal tract" EXACT [] synonym: "uveal tract" EXACT [] synonym: "Vascular layer of eyeball" EXACT [] xref: FMA:58103 xref: GAID:912 xref: MA:0002480 xref: ncithesaurus:Uvea is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001801 ! anterior segment of eyeball [Term] id: UBERON:0001769 name: iris alt_id: UBERON:FMA_58235-MA_0000273-XAO_0000185-ZFA_0001238 def: "a membrane in the eye, responsible for controlling the amount of light reaching the retina. The iris consists of pigmented fibrovascular tissue known as a stroma. It is the most forward portion of the eye and the only one seen on superficial inspection. The stroma connects a sphincter muscle (sphincter pupillae), which contracts the pupil, and a set of dilator muscles (dilator pupillae) which open it. The back surface is covered by a heavily pigmented epithelial layer two cells thick (the iris pigment epithelium), but the front surface has no epithelium. The high pigment content blocks light from passing through the iris and restricts it to the pupil. The outer edge of the iris, known as the root, is attached to the sclera and the anterior ciliary body. The iris and ciliary body together are known as the anterior uvea. Just in front of the root of the iris is the region through which the aqueous humour constantly drains out of the eye, with the result that diseases of the iris often have important effects on intraocular pressure, and indirectly on vision. Depending on the amount of light, the iris makes the pupil larger or smaller." [Wikipedia:Iris_(anatomy)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Iris" EXACT [] xref: BTO:0000653 xref: FMA:58235 xref: GAID:917 xref: HOG:0000101 xref: MA:0000273 xref: ncithesaurus:Iris xref: OpenCyc:Mx4rvVjbppwpEbGdrcN5Y29ycA xref: TAO:0001238 xref: XAO:0000185 xref: ZFA:0001238 is_a: UBERON:0001768 ! vascular layer of eyeball relationship: develops_from UBERON:0003072 ! eye vesicle [Term] id: UBERON:0001770 name: lacrimal canaliculus alt_id: UBERON:FMA_58245-MA_0001294 def: "." [Wikipedia:Lacrimal_canaliculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lacrimal canaliculus" EXACT [] xref: FMA:58245 xref: MA:0001294 xref: ncithesaurus:Lacrimal_Canaliculus is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001850 ! lacrimal duct [Term] id: UBERON:0001771 name: pupil alt_id: UBERON:FMA_58252-MA_0001292-XAO_0000283-ZFA_0001283 def: "sphere that is located in the center of the iris of the eye and that controls the amount of light that enters the eye." [Wikipedia:Pupil] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pupil" EXACT [] xref: FMA:58252 xref: GAID:918 xref: HOG:0000116 xref: MA:0001292 xref: ncithesaurus:Pupil xref: OpenCyc:Mx4rvViBr5wpEbGdrcN5Y29ycA xref: TAO:0001283 xref: XAO:0000283 xref: ZFA:0001283 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001769 ! iris [Term] id: UBERON:0001772 name: corneal epithelium alt_id: UBERON:FMA_58263-MA_0001243 def: "." [Wikipedia:Corneal_epithelium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anterior corneal epithelium" EXACT [] synonym: "anterior corneal epithelium" EXACT [] synonym: "Corneal epithelium" EXACT [] synonym: "Epithelium anterius (Cornea)" EXACT [] synonym: "epithelium anterius (cornea)" EXACT [] synonym: "Epithelium of cornea" EXACT [] synonym: "epithelium of cornea" EXACT [] synonym: "External epithelium of cornea" EXACT [] synonym: "external epithelium of cornea" EXACT [] xref: BTO:0000287 xref: EFO:0001917 xref: FMA:58263 xref: GAID:895 xref: MA:0001243 xref: ncithesaurus:Corneal_Epithelium xref: ZFA:0001683 is_a: UBERON:0000488 ! atypical epithelium is_a: UBERON:0001803 ! implied link automatically realized ! epithelium of lens intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000964 ! cornea relationship: part_of UBERON:0000964 ! cornea [Term] id: UBERON:0001773 name: sclera alt_id: UBERON:FMA_58269-MA_0000280-XAO_0000183 def: "." [Wikipedia:Sclera] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sclera" EXACT [] xref: BTO:0001606 xref: FMA:58269 xref: GAID:911 xref: HOG:0001274 xref: MA:0000280 xref: ncithesaurus:Sclera xref: OpenCyc:Mx4rv7yR55wpEbGdrcN5Y29ycA xref: XAO:0000183 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000970 ! eye [Term] id: UBERON:0001774 name: muscle of trunk alt_id: UBERON:FMA_58274-MA_0000514 def: "Muscle organ which is a part of the trunk. Examples: external intercostal muscle, external oblique, levator ani." [] comment: TODO - check muscle organ vs musculature subset: uberon_slim synonym: "Muscle of trunk" EXACT [] synonym: "Trunk muscle" EXACT [] synonym: "trunk muscle" EXACT [] synonym: "trunk musculature" EXACT [] xref: AAO:0000611 xref: FMA:58274 xref: MA:0000514 xref: XAO:0003230 xref: ZFA:0000473 is_a: UBERON:0001630 ! muscle organ intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0001775 name: ciliary body alt_id: UBERON:FMA_58295-MA_0000264-XAO_0000186-ZFA_0001203 def: "." [Wikipedia:Ciliary_body] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ciliary body" EXACT [] xref: BTO:0000260 xref: FMA:58295 xref: GAID:916 xref: HOG:0000102 xref: MA:0000264 xref: ncithesaurus:Ciliary_Body xref: TAO:0001203 xref: XAO:0000186 xref: ZFA:0001203 is_a: UBERON:0001768 ! vascular layer of eyeball relationship: part_of UBERON:0001768 ! vascular layer of eyeball [Term] id: UBERON:0001776 name: choroid alt_id: UBERON:FMA_58298-MA_0000263 def: "." [Wikipedia:Choroid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Choroid" EXACT [] xref: BTO:0001829 xref: FMA:58298 xref: GAID:913 xref: MA:0000263 xref: ncithesaurus:Choroid xref: ZFA:0005229 is_a: UBERON:0001768 ! vascular layer of eyeball relationship: part_of UBERON:0001768 ! vascular layer of eyeball [Term] id: UBERON:0001777 name: substantia propria of cornea alt_id: UBERON:FMA_58306-MA_0001245 def: "." [Wikipedia:Corneal_stroma] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "corneal stroma" EXACT [] synonym: "Stroma of cornea" EXACT [] synonym: "stroma of cornea" EXACT [] synonym: "substantia propria" RELATED [] synonym: "Substantia propria of cornea" EXACT [] xref: EFO:0002514 xref: FMA:58306 xref: GAID:893 xref: MA:0001245 xref: ncithesaurus:Corneal_Stroma xref: ZFA:0001685 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000964 ! cornea [Term] id: UBERON:0001778 name: epithelium of ciliary body alt_id: UBERON:FMA_58464-MA_0001238 comment: This class was created automatically from a combination of ontologies synonym: "Ciliary body epithelium" EXACT [] synonym: "ciliary body epithelium" EXACT [] synonym: "Ciliary epithelium" EXACT [] synonym: "ciliary epithelium" EXACT [] synonym: "Epithelium of ciliary body" EXACT [] xref: BTO:0001770 xref: FMA:58464 xref: MA:0001238 xref: ncithesaurus:Ciliary_Epithelium is_a: UBERON:0000488 ! atypical epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001775 ! ciliary body relationship: part_of UBERON:0001775 ! ciliary body [Term] id: UBERON:0001779 name: iris stroma alt_id: UBERON:FMA_58526-MA_0002777 def: "the delicate vascular connective tissue that lies between the anterior surface of the iris and the pars iridica retinae." [http://www.drugs.com/dict/stroma-of-iris.html, Wikipedia:Iris_stroma] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "iridial stroma" EXACT [] synonym: "stroma of iris" EXACT [] xref: FMA:58526 xref: MA:0002777 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001769 ! iris [Term] id: UBERON:0001780 name: spinal nerve alt_id: UBERON:FMA_5858-MA_0000233-XAO_0003101 def: "Neural tree (organ) which is directly continuous with the spinal cord. Examples: Fifth cervical spinal nerve, third lumbar spinal nerve." [Wikipedia:Spinal_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Spinal nerve" EXACT [] synonym: "Spinal nerve tree" EXACT [] synonym: "spinal nerve tree" EXACT [] xref: BTO:0000870 xref: FMA:5858 xref: GAID:841 xref: HOG:0000824 xref: MA:0000233 xref: ncithesaurus:Spinal_Nerve xref: XAO:0003101 is_a: UBERON:0001021 ! nerve is_a: UBERON:0003439 ! implied link automatically realized ! trunk nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0001781 name: layer of retina alt_id: UBERON:FMA_58617-MA_0001319-XAO_0000266 comment: GO: the outer nuclear layer (ONL), which contains photoreceptor nuclei; the inner nuclear layer (INL), which contains amacrine, bipolar and horizontal cells; and the retinal ganglion cell (RGC) layer. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells. The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells. Spanning all layers of the retina are the radially oriented Mueller glia. synonym: "Layer of retina" EXACT [] synonym: "Retina layer" EXACT [] synonym: "retina layer" EXACT [] synonym: "retinal layer" EXACT [] xref: FMA:58617 xref: MA:0001319 xref: ncithesaurus:Retina_Layer xref: XAO:0000266 is_a: UBERON:0000119 ! cell layer relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0001782 name: pigmented layer of retina alt_id: UBERON:FMA_58627-MA_0000279-ZFA_0000144 def: "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup. Kimmel et al, 1995." [Wikipedia:Retinal_pigment_epithelium, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Outer pigmented layer of retina" EXACT [] synonym: "outer pigmented layer of retina" EXACT [] synonym: "Pigment epithelium of retina" EXACT [] synonym: "pigment epithelium of retina" EXACT [] synonym: "pigmented epithelium" RELATED [] synonym: "Pigmented layer of retina" EXACT [] synonym: "pigmented retinal epithelium" EXACT [] synonym: "PRE" RELATED [] synonym: "Retinal pigment epithelium" EXACT [] synonym: "retinal pigment epithelium" EXACT [] synonym: "retinal pigmented epithelium" EXACT [] synonym: "RPE" RELATED [] synonym: "Stratum pigmentosum (Retina)" EXACT [] synonym: "stratum pigmentosum (retina)" EXACT [] xref: BTO:0001177 xref: EHDAA:4765 xref: FMA:58627 xref: HOG:0000536 xref: MA:0000279 xref: ncithesaurus:Retinal_Pigment_Epithelium xref: TAO:0000144 xref: ZFA:0000144 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001783 name: optic disc alt_id: UBERON:FMA_58634-MA_0000278 def: "." [Wikipedia:Optic_disc] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Optic disc" EXACT [] xref: EFO:0001974 xref: EHDAA:9077 xref: FMA:58634 xref: HOG:0000551 xref: MA:0000278 xref: ncithesaurus:Optic_Disc is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0001784 name: macula lutea alt_id: UBERON:FMA_58637-MA_0001306-ZFA_0000386 comment: Obsoleted as it accidentally grouped macula and macula lutea is_obsolete: true consider: UBERON:0000053 consider: UBERON:0000054 [Term] id: UBERON:0001785 name: cranial nerve alt_id: UBERON:FMA_5865-MA_0000215-XAO_0003089-ZFA_0000641 def: "Neural tree organ which is continuous with the brain. Examples: Trochlear nerve, facial nerve[FMA]. // Any of the major paired nerves of the head region. // Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves." [Wikipedia:Cranial_nerve, XB:curator, ZFIN:curator] comment: note not classified as nerve in FMA subset: uberon_slim synonym: "Cranial nerve" EXACT [] synonym: "cranial nerves" RELATED [] synonym: "Cranial neural tree organ" EXACT [] synonym: "cranial neural tree organ" EXACT [] xref: AAO:0000108 xref: BTO:0001104 xref: FMA:5865 xref: GAID:802 xref: HOG:0000279 xref: MA:0000215 xref: ncithesaurus:Cranial_Nerve xref: NIF_GrossAnatomy:birnlex_1623 xref: OpenCyc:Mx4rvWvJVpwpEbGdrcN5Y29ycA xref: TAO:0000641 xref: XAO:0003089 xref: ZFA:0000641 is_a: UBERON:0001021 ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: continuous_with UBERON:0000955 ! brain relationship: continuous_with UBERON:0000955 ! brain [Term] id: UBERON:0001786 name: fovea centralis alt_id: UBERON:FMA_58658-MA_0001307 def: "." [Wikipedia:Fovea_centralis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "fovea" EXACT [] synonym: "Fovea centralis" EXACT [] xref: FMA:58658 xref: GAID:910 xref: MA:0001307 xref: ncithesaurus:Fovea_Centralis xref: NIF_GrossAnatomy:birnlex_2543 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000053 ! macula lutea [Term] id: UBERON:0001787 name: photoreceptor layer of retina alt_id: UBERON:FMA_58680-MA_0001308 def: "The layer within the retina where the photoreceptor cell receptor segments reside." [Wikipedia:Layer_of_rods_and_cones, ZFA:0000143] subset: uberon_slim synonym: "Layer of rods and cones" EXACT [] synonym: "layer of rods and cones" RELATED [] synonym: "neural retina" EXACT [] synonym: "Photoreceptor layer of retina" EXACT [] synonym: "retina photoreceptor layer" EXACT [] synonym: "retinal neural layer" EXACT [] synonym: "Stratum segmentorum externorum et internorum (Retina)" EXACT [] synonym: "stratum segmentorum externorum et internorum (retina)" EXACT [] xref: FMA:58680 xref: MA:0001308 xref: XAO:0003215 xref: ZFA:0000143 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001788 name: outer limiting layer of retina alt_id: UBERON:FMA_58683-MA_0001309 comment: This class was created automatically from a combination of ontologies synonym: "External limiting lamina of retina" EXACT [] synonym: "external limiting lamina of retina" EXACT [] synonym: "External limiting membrane of retina" EXACT [] synonym: "external limiting membrane of retina" EXACT [] synonym: "Outer limiting layer of retina" EXACT [] synonym: "Outer limiting membrane of retina" EXACT [] synonym: "outer limiting membrane of retina" EXACT [] synonym: "retina external limiting lamina" EXACT [] synonym: "Stratum limitans externum (Retina)" EXACT [] synonym: "stratum limitans externum (retina)" EXACT [] xref: FMA:58683 xref: MA:0001309 is_a: UBERON:0001781 ! layer of retina [Term] id: UBERON:0001789 name: outer nuclear layer of retina alt_id: UBERON:FMA_58684-MA_0001315 def: "The layer within the retina where the photoreceptor cell bodies reside." [ZFA:0001464] comment: This class was created automatically from a combination of ontologies synonym: "ONL" NARROW [] synonym: "Outer nuclear layer of retina" EXACT [] synonym: "retina outer nuclear layer" EXACT [] synonym: "retinal outer nuclear layer" EXACT [] synonym: "Stratum nucleare externum (Retina)" EXACT [] synonym: "stratum nucleare externum (retina)" EXACT [] xref: FMA:58684 xref: MA:0001315 xref: XAO:0003219 xref: ZFA:0001464 is_a: UBERON:0001781 ! layer of retina [Term] id: UBERON:0001790 name: outer plexiform layer of retina alt_id: UBERON:FMA_58685-MA_0001316 def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells[ZFA]. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells[GO]." [ZFA:0001330] comment: This class was created automatically from a combination of ontologies synonym: "OPL" NARROW [] synonym: "Outer plexiform layer of retina" EXACT [] synonym: "retina outer plexiform layer" EXACT [] synonym: "Stratum plexiforme externum" EXACT [] synonym: "stratum plexiforme externum" EXACT [] xref: FMA:58685 xref: MA:0001316 xref: XAO:0003218 xref: ZFA:0001330 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001791 name: inner nuclear layer of retina alt_id: UBERON:FMA_58686-MA_0001311 def: "Layer of retina that contains amacrine, bipolar and horizontal cells." [] comment: This class was created automatically from a combination of ontologies synonym: "INL" NARROW [] synonym: "Inner nuclear layer of retina" EXACT [] synonym: "retina inner nuclear layer" EXACT [] synonym: "retinal inner nuclear layer" EXACT [] synonym: "Stratum nucleare internum" EXACT [] synonym: "stratum nucleare internum" EXACT [] xref: FMA:58686 xref: MA:0001311 xref: XAO:0003221 xref: ZFA:0000119 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001792 name: ganglionic layer of retina alt_id: UBERON:FMA_58687-MA_0001310 def: "." [Wikipedia:Ganglion_cell_layer] comment: Check exact synonyms in ZFA / XAO subset: uberon_slim synonym: "Ganglion cell layer" EXACT [] synonym: "ganglion cell layer" EXACT [] synonym: "Ganglionic cell layer of retina" EXACT [] synonym: "ganglionic cell layer of retina" EXACT [] synonym: "Ganglionic layer of retina" EXACT [] synonym: "retina ganglion cell layer" EXACT [] synonym: "RGC layer" EXACT [] synonym: "Stratum ganglionicum (Retina)" EXACT [] synonym: "stratum ganglionicum (retina)" EXACT [] xref: BTO:0003398 xref: FMA:58687 xref: MA:0001310 xref: ncithesaurus:Ganglion_Cell_Layer xref: XAO:0003223 xref: ZFA:0000024 is_a: UBERON:0001781 ! layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001793 name: nerve fiber layer of retina alt_id: UBERON:FMA_58688-MA_0001314 comment: This class was created automatically from a combination of ontologies synonym: "Layer of nerve fibers of retina" EXACT [] synonym: "layer of nerve fibers of retina" EXACT [] synonym: "Layer of nerve fibres of retina" EXACT [] synonym: "layer of nerve fibres of retina" EXACT [] synonym: "Nerve fiber layer of retina" EXACT [] synonym: "retina nerve fiber layer" EXACT [] synonym: "Stratum neurofibrarum (Retina)" EXACT [] synonym: "stratum neurofibrarum (retina)" EXACT [] synonym: "Stratum opticum of retina" EXACT [] synonym: "stratum opticum of retina" EXACT [] xref: FMA:58688 xref: HOG:0001169 xref: MA:0001314 is_a: UBERON:0001781 ! layer of retina relationship: has_part UBERON:0001021 ! nerve relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001794 name: inner limiting layer of retina alt_id: UBERON:FMA_58689-MA_0001313 comment: This class was created automatically from a combination of ontologies synonym: "Inner limiting layer of retina" EXACT [] synonym: "Inner limiting membrane of retina" EXACT [] synonym: "inner limiting membrane of retina" EXACT [] synonym: "Internal limiting lamina of retina" EXACT [] synonym: "internal limiting lamina of retina" EXACT [] synonym: "Internal limiting membrane of retina" EXACT [] synonym: "internal limiting membrane of retina" EXACT [] synonym: "retina internal limiting lamina" EXACT [] xref: FMA:58689 xref: MA:0001313 is_a: UBERON:0001781 ! layer of retina [Term] id: UBERON:0001795 name: inner plexiform layer of retina alt_id: UBERON:FMA_58704-MA_0001312 def: "The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells[GO]." [] comment: This class was created automatically from a combination of ontologies synonym: "Inner plexiform layer of retina" EXACT [] synonym: "IPL" NARROW [] synonym: "retina inner plexiform layer" EXACT [] synonym: "Stratum plexiforme internum" EXACT [] synonym: "stratum plexiforme internum" EXACT [] xref: FMA:58704 xref: MA:0001312 xref: XAO:0003225 xref: ZFA:0001329 is_a: UBERON:0001781 ! layer of retina intersection_of: UBERON:0001781 ! layer of retina intersection_of: adjacent_to UBERON:0001791 ! inner nuclear layer of retina intersection_of: adjacent_to UBERON:0001792 ! ganglionic layer of retina relationship: adjacent_to UBERON:0001791 ! inner nuclear layer of retina relationship: adjacent_to UBERON:0001792 ! ganglionic layer of retina relationship: part_of UBERON:0003902 ! retinal neural layer [Term] id: UBERON:0001796 name: aqueous humor of eyeball alt_id: UBERON:FMA_58819-MA_0001236 def: "Body substance in liquid state contained in the anterior and posterior chambers of the eyeball." [Wikipedia:Aqueous_humor] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Aqueous humor" EXACT [] synonym: "aqueous humor" EXACT [] synonym: "Aqueous humor of eyeball" EXACT [] synonym: "aqueous humour" EXACT [] xref: EHDAA:10196 xref: ENVO:02000024 xref: FMA:58819 xref: GAID:890 xref: HOG:0000548 xref: MA:0001236 xref: ncithesaurus:Aqueous_Humor xref: OpenCyc:Mx4rvdGd-5wpEbGdrcN5Y29ycA is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0001766 ! anterior chamber of eyeball [Term] id: UBERON:0001797 name: vitreous humor alt_id: UBERON:FMA_58822-MA_0001286 def: "Body substance of semisolid state which constitutes the vitreous body of the eye." [Wikipedia:Vitreous_humor] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Humor vitreous" EXACT [] synonym: "humor vitreous" EXACT [] synonym: "Vitreous humor" EXACT [] synonym: "vitreous humour" RELATED [] xref: BTO:0001451 xref: ENVO:02000032 xref: FMA:58822 xref: MA:0001286 xref: ncithesaurus:Vitreous_Humor xref: OpenCyc:Mx4rv7ZIfZwpEbGdrcN5Y29ycA is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0001798 ! vitreous body [Term] id: UBERON:0001798 name: vitreous body alt_id: UBERON:FMA_58827-MA_0002462 def: "Mucoid tissue in the vitreous chamber of the eyeball. Examples: There are only two instances, right and left vitreous bodies." [Wikipedia:Vitreous_body] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Vitreous body" EXACT [] xref: ENVO:02000032 xref: FMA:58827 xref: GAID:919 xref: MA:0002462 xref: ncithesaurus:Vitreous_Body is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0001799 ! vitreous chamber of eyeball [Term] id: UBERON:0001799 name: vitreous chamber of eyeball alt_id: UBERON:FMA_58848-MA_0002461 def: "." [Wikipedia:Vitreous_chamber] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Camera postrema" EXACT [] synonym: "camera postrema" EXACT [] synonym: "Camera vitrea" EXACT [] synonym: "camera vitrea" EXACT [] synonym: "Camera vitrea bulbi" EXACT [] synonym: "camera vitrea bulbi" EXACT [] synonym: "Postremal chamber" EXACT [] synonym: "postremal chamber" EXACT [] synonym: "Postremal chamber of eyeball" EXACT [] synonym: "postremal chamber of eyeball" EXACT [] synonym: "Vitreous chamber" EXACT [] synonym: "vitreous chamber" EXACT [] synonym: "Vitreous chamber of eyeball" EXACT [] xref: FMA:58848 xref: MA:0002461 xref: ncithesaurus:Vitreous_Chamber is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001802 ! posterior segment of eyeball [Term] id: UBERON:0001800 name: sensory ganglion alt_id: UBERON:FMA_5885-MA_0002566 comment: This class was created automatically from a combination of ontologies synonym: "Ganglion sensorium" EXACT [] synonym: "ganglion sensorium" EXACT [] synonym: "Sensory ganglion" EXACT [] xref: FMA:5885 xref: MA:0002566 xref: ncithesaurus:Sensory_Ganglion is_a: UBERON:0000045 ! ganglion [Term] id: UBERON:0001801 name: anterior segment of eyeball alt_id: UBERON:FMA_58865-MA_0002484 comment: This class was created automatically from a combination of ontologies synonym: "Anterior segment of eyeball" EXACT [] synonym: "eye anterior segment" EXACT [] synonym: "Segmentum anterius (Bulbus oculi)" EXACT [] synonym: "segmentum anterius (bulbus oculi)" EXACT [] xref: FMA:58865 xref: MA:0002484 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0000970 ! eye [Term] id: UBERON:0001802 name: posterior segment of eyeball alt_id: UBERON:FMA_58868-MA_0002485 comment: This class was created automatically from a combination of ontologies synonym: "eye posterior segment" EXACT [] synonym: "Posterior segment of eyeball" EXACT [] synonym: "Segmentum posterius (Bulbus oculi)" EXACT [] synonym: "segmentum posterius (bulbus oculi)" EXACT [] xref: FMA:58868 xref: MA:0002485 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0000970 ! eye [Term] id: UBERON:0001803 name: epithelium of lens alt_id: UBERON:FMA_58871-MA_0001301-ZFA_0001326 def: "The cells of the lens epithelium regulate most of the homeostatic functions of the lens.[6] As ions, nutrients, and liquid enter the lens from the aqueous humor, Na+/K+ ATPase pumps in the lens epithelial cells pump ions out of the lens to maintain appropriate lens osmolarity and volume, with equatorially positioned lens epithelium cells contributing most to this current. The activity of the Na+/K+ ATPases keeps water and current flowing through the lens from the poles and exiting through the equatorial regions." [Wikipedia:Lens_(anatomy)#Lens_Epithelium] comment: This class was created automatically from a combination of ontologies synonym: "Epithelium of lens" EXACT [] synonym: "Lens epithelium" EXACT [] synonym: "lens epithelium" EXACT [] xref: BTO:0001873 xref: FMA:58871 xref: MA:0001301 xref: TAO:0001326 xref: ZFA:0001326 is_a: UBERON:0000484 ! simple cuboidal epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000965 ! lens relationship: part_of UBERON:0000965 ! lens [Term] id: UBERON:0001804 name: capsule of lens alt_id: UBERON:FMA_58881-MA_0001300 def: "a smooth, transparent basement membrane that completely surrounds the lens. It is synthesized by the lens epithelium and its main components are Type IV collagen and sulfated glycosaminoglycans (GAGs)." [Wikipedia:Lens_capsule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Capsule of lens" EXACT [] synonym: "Lens capsule" EXACT [] synonym: "lens capsule" EXACT [] xref: FMA:58881 xref: HOG:0000550 xref: MA:0001300 xref: ncithesaurus:Lens_Capsule is_a: UBERON:0003893 ! capsule intersection_of: UBERON:0003893 ! capsule intersection_of: surrounds UBERON:0000965 ! lens relationship: surrounds UBERON:0000965 ! lens [Term] id: UBERON:0001805 name: autonomic ganglion alt_id: UBERON:FMA_5889-MA_0000220 def: "ganglion that has dendrites that form a junction between autonomic nerves originating from the central nervous system and autonomic nerves innervating their target organs in the periphery. There are two subtypes, sympathetic ganglion and parasympathetic ganglion." [Wikipedia:Autonomic_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Autonomic ganglion" EXACT [] xref: FMA:5889 xref: MA:0000220 xref: ncithesaurus:Autonomic_Ganglion is_a: UBERON:0000045 ! ganglion intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0002410 ! autonomic nervous system relationship: part_of UBERON:0002410 ! autonomic nervous system [Term] id: UBERON:0001806 name: sympathetic ganglion alt_id: UBERON:FMA_5890-MA_0000226 def: "." [Wikipedia:Sympathetic_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ganglion sympatheticum" EXACT [] synonym: "ganglion sympatheticum" EXACT [] synonym: "Sympathetic ganglion" EXACT [] xref: BTO:0001333 xref: FMA:5890 xref: MA:0000226 xref: ncithesaurus:Sympathetic_Ganglion is_a: UBERON:0001805 ! autonomic ganglion intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0000013 ! sympathetic nervous system [Term] id: UBERON:0001807 name: paravertebral ganglion alt_id: UBERON:FMA_5891-ZFA_0001556 def: "Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord." [Wikipedia:Paravertebral_ganglion, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ganglion of sympathetic trunk" EXACT [] synonym: "ganglion of sympathetic trunk" EXACT [] synonym: "Ganglion trunci sympathetici" EXACT [] synonym: "ganglion trunci sympathetici" EXACT [] synonym: "Paravertebral ganglion" EXACT [] synonym: "Sympathetic chain ganglion" EXACT [] synonym: "sympathetic chain ganglion" EXACT [] xref: FMA:5891 xref: TAO:0001556 xref: ZFA:0001556 is_a: UBERON:0001806 ! sympathetic ganglion [Term] id: UBERON:0001808 name: parasympathetic ganglion alt_id: UBERON:FMA_5894-MA_0002469 def: "." [Wikipedia:Parasympathetic_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Parasympathetic ganglion" EXACT [] xref: BTO:0001256 xref: FMA:5894 xref: MA:0002469 xref: ncithesaurus:Parasympathetic_Ganglion is_a: UBERON:0001805 ! autonomic ganglion [Term] id: UBERON:0001809 name: enteric ganglion alt_id: UBERON:FMA_5896-MA_0001144 comment: This class was created automatically from a combination of ontologies synonym: "Enteric ganglion" EXACT [] synonym: "Intramural ganglion" EXACT [] synonym: "intramural ganglion" EXACT [] xref: FMA:5896 xref: MA:0001144 xref: ncithesaurus:Enteric_Ganglion is_a: UBERON:0001808 ! parasympathetic ganglion relationship: part_of UBERON:0002005 ! enteric nervous system [Term] id: UBERON:0001810 name: nerve plexus alt_id: UBERON:FMA_5901-MA_0002407 def: "Anatomical junction where subdivisions of two or more neural trees interconnect with one another to form a network through which nerve fibers of the constituent nerve trees become regrouped; together with other nerve plexuses, nerves and ganglia, it constitutes the peripheral nervous system. Examples: cervical nerve plexus, brachial nerve plexus, sacral nerve plexus." [Wikipedia:Nerve_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Nerve plexus" EXACT [] xref: BTO:0000205 xref: EHDAA:3780 xref: FMA:5901 xref: MA:0002407 xref: ncithesaurus:Nerve_Plexus is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001811 name: conjunctiva alt_id: UBERON:FMA_59011-XAO_0000182 def: "." [Wikipedia:Conjunctiva] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Conjunctiva" EXACT [] synonym: "Wall of conjunctival sac" EXACT [] synonym: "wall of conjunctival sac" EXACT [] xref: BTO:0003415 xref: EFO:0000374 xref: FMA:59011 xref: GAID:898 xref: HAO:0000221 xref: MA:0000265 xref: ncithesaurus:Conjunctiva xref: XAO:0000182 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000970 ! eye [Term] id: UBERON:0001812 name: palpebral conjunctiva alt_id: UBERON:FMA_59025-MA_0001265 comment: This class was created automatically from a combination of ontologies synonym: "Palpebral conjunctiva" EXACT [] synonym: "Tunica conjunctiva palpebrum" EXACT [] synonym: "tunica conjunctiva palpebrum" EXACT [] xref: FMA:59025 xref: MA:0001265 xref: ncithesaurus:Palpebral_Conjunctiva is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0001813 name: somatic nerve plexus alt_id: UBERON:FMA_5903-MA_0000235 comment: This class was created automatically from a combination of ontologies synonym: "Plexus of spinal nerves" EXACT [] synonym: "plexus of spinal nerves" EXACT [] synonym: "Somatic nerve plexus" EXACT [] synonym: "Spinal nerve plexus" EXACT [] synonym: "spinal nerve plexus" EXACT [] xref: FMA:5903 xref: HOG:0000925 xref: MA:0000235 xref: ncithesaurus:Spinal_Nerve_Plexus is_a: UBERON:0001810 ! nerve plexus [Term] id: UBERON:0001814 name: brachial nerve plexus alt_id: UBERON:FMA_5906-MA_0001180 def: "." [Wikipedia:Brachial_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Brachial nerve plexus" EXACT [] synonym: "Brachial plexus" EXACT [] synonym: "brachial plexus" EXACT [] xref: EHDAA:3782 xref: FMA:5906 xref: GAID:842 xref: HOG:0000372 xref: MA:0001180 xref: ncithesaurus:Brachial_Plexus is_a: UBERON:0001021 ! nerve is_a: UBERON:0001813 ! somatic nerve plexus is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve relationship: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0001815 name: lumbosacral nerve plexus alt_id: UBERON:FMA_5907-MA_0001181 def: "." [Wikipedia:Lumbosacral_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lumbosacral nerve plexus" EXACT [] synonym: "Lumbosacral plexus" EXACT [] synonym: "lumbosacral plexus" EXACT [] xref: EHDAA:4673 xref: FMA:5907 xref: GAID:849 xref: MA:0001181 xref: ncithesaurus:Lumbosacral_Plexus is_a: UBERON:0001813 ! somatic nerve plexus [Term] id: UBERON:0001816 name: autonomic nerve plexus alt_id: UBERON:FMA_5910-MA_0000221 comment: This class was created automatically from a combination of ontologies synonym: "Autonomic nerve plexus" EXACT [] synonym: "Autonomic plexus" EXACT [] synonym: "autonomic plexus" EXACT [] synonym: "Visceral nerve plexus" EXACT [] synonym: "visceral nerve plexus" EXACT [] synonym: "Visceral plexus" EXACT [] synonym: "visceral plexus" EXACT [] xref: FMA:5910 xref: MA:0000221 is_a: UBERON:0001810 ! nerve plexus relationship: part_of UBERON:0002410 ! autonomic nervous system [Term] id: UBERON:0001817 name: lacrimal gland alt_id: UBERON:FMA_59101-MA_0001296 def: "Lobular organ the parenchyma of which consists of glandular acini which communicate the lacrimal sac. Examples: There only two instances, right lacrimal and left lacrimal glands." [Wikipedia:Lacrimal_gland] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lacrimal gland" EXACT [] xref: EFO:0001389 xref: FMA:59101 xref: HOG:0001476 xref: MA:0001296 xref: ncithesaurus:Lacrimal_Gland is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0001750 ! lacrimal apparatus relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0001818 name: tarsal gland alt_id: UBERON:FMA_59104-MA_0001249 def: "." [Wikipedia:Tarsal_gland] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Gland of Meibom" EXACT [] synonym: "gland of meibom" EXACT [] synonym: "Meibomian gland" EXACT [] synonym: "meibomian gland" EXACT [] synonym: "palpebral gland" RELATED [] synonym: "Tarsal gland" EXACT [] xref: FMA:59104 xref: GAID:899 xref: MA:0001249 xref: ncithesaurus:Meibomian_Gland is_a: UBERON:0001821 ! sebaceous gland relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0001819 name: palpebral fissure alt_id: UBERON:FMA_59110-MA_0001266 def: "." [Wikipedia:Palpebral_fissure] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Palpebral fissure" EXACT [] xref: FMA:59110 xref: MA:0001266 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0001820 name: sweat gland alt_id: UBERON:FMA_59152-MA_0000150 def: "." [Wikipedia:Sweat_gland] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sweat gland" EXACT [] xref: BTO:0001331 xref: FMA:59152 xref: GAID:943 xref: HOG:0001467 xref: MA:0000150 xref: ncithesaurus:Sweat_Gland xref: OpenCyc:Mx4rvVjx15wpEbGdrcN5Y29ycA is_a: UBERON:0002530 ! gland is_a: UBERON:0003297 ! implied link automatically realized ! gland of integumental system intersection_of: UBERON:0002530 ! gland intersection_of: secretes UBERON:0001089 ! sweat relationship: part_of UBERON:0002097 ! skin relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0001821 name: sebaceous gland alt_id: UBERON:FMA_59160-MA_0002565 def: "." [Wikipedia:Sebaceous_gland] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sebaceous gland" EXACT [] xref: BTO:0001980 xref: FMA:59160 xref: GAID:900 xref: HOG:0001468 xref: MA:0002565 xref: ncithesaurus:Sebaceous_Gland is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0001822 name: orbital septum alt_id: UBERON:FMA_59328-MA_0001259 def: "a membranous sheet that acts as the anterior boundary of the orbit. It extends from the orbital rims to the eyelids[WP]." [Wikipedia:Orbital_septum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Orbital septum" EXACT [] xref: FMA:59328 xref: MA:0001259 is_a: UBERON:0003037 ! septum relationship: part_of UBERON:0002204 ! musculoskeletal system [Term] id: UBERON:0001823 name: nasal cartilage alt_id: UBERON:FMA_59502-MA_0001883 def: "." [Wikipedia:Nasal_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Nasal cartilage" EXACT [] xref: FMA:59502 xref: MA:0001883 xref: ncithesaurus:Nasal_Cartilage is_a: UBERON:0002236 ! costal cartilage [Term] id: UBERON:0001824 name: mucosa of larynx alt_id: UBERON:FMA_59662-MA_0001766 comment: This class was created automatically from a combination of ontologies synonym: "Laryngeal mucosa" EXACT [] synonym: "laryngeal mucosa" EXACT [] synonym: "larynx mucosa" EXACT [] synonym: "Mucosa of larynx" EXACT [] synonym: "Mucous membrane of larynx" EXACT [] synonym: "mucous membrane of larynx" EXACT [] xref: FMA:59662 xref: GAID:301 xref: MA:0001766 xref: ncithesaurus:Laryngeal_Mucosa is_a: UBERON:0000064 ! organ part is_a: UBERON:0000344 ! implied link automatically realized ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001737 ! larynx relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0001825 name: paranasal sinus alt_id: UBERON:FMA_59679-MA_0000431 def: "." [Wikipedia:Paranasal_sinus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Paranasal sinus" EXACT [] xref: FMA:59679 xref: GAID:355 xref: MA:0000431 xref: ncithesaurus:Paranasal_Sinus is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0001826 name: mucosa of nose alt_id: UBERON:FMA_59684-MA_0001324 comment: This class was created automatically from a combination of ontologies synonym: "Mucosa of nose" EXACT [] synonym: "Mucous membrane of nose" EXACT [] synonym: "mucous membrane of nose" EXACT [] synonym: "nasal cavity epithelium" EXACT [] synonym: "Nasal mucosa" EXACT [] synonym: "nasal mucosa" RELATED [] xref: BTO:0000912 xref: FMA:59684 xref: GAID:302 xref: MA:0001324 xref: ncithesaurus:Nasal_Cavity_Epithelium is_a: UBERON:0000064 ! organ part is_a: UBERON:0000344 ! implied link automatically realized ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001707 ! nasal cavity relationship: part_of UBERON:0001707 ! nasal cavity [Term] id: UBERON:0001827 name: tear alt_id: UBERON:FMA_59756-MA_0002508 def: "Secretion produced by the lacrimal gland." [Wikipedia:Tear] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Tear" EXACT [] xref: BTO:0001499 xref: ENVO:02000034 xref: FMA:59756 xref: GAID:1173 xref: MA:0002508 xref: ncithesaurus:Tear is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001828 name: gingiva alt_id: UBERON:FMA_59762-MA_0000342 def: "." [Wikipedia:Gingiva] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Gingiva" EXACT [] synonym: "Gum" EXACT [] synonym: "gum" RELATED [] xref: BTO:0000519 xref: EFO:0001925 xref: FMA:59762 xref: GAID:1257 xref: galen:Gingiva xref: HOG:0001269 xref: MA:0000342 xref: ncithesaurus:Gingiva xref: OpenCyc:Mx4rvViWnZwpEbGdrcN5Y29ycA is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000166 ! oral opening [Term] id: UBERON:0001829 name: major salivary gland alt_id: UBERON:FMA_59788-MA_0002478 comment: This class was created automatically from a combination of ontologies synonym: "Major salivary gland" EXACT [] xref: FMA:59788 xref: MA:0002478 xref: ncithesaurus:Major_Salivary_Gland is_a: UBERON:0001044 ! salivary gland relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0001830 name: minor salivary gland alt_id: UBERON:FMA_59789-MA_0002479 comment: This class was created automatically from a combination of ontologies synonym: "Minor salivary gland" EXACT [] xref: FMA:59789 xref: GAID:940 xref: MA:0002479 xref: ncithesaurus:Minor_Salivary_Gland is_a: UBERON:0001044 ! salivary gland relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0001831 name: parotid gland alt_id: UBERON:FMA_59790-MA_0001585 def: "." [Wikipedia:Parotid_gland] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Parotid" EXACT [] synonym: "parotid" EXACT [] synonym: "Parotid gland" EXACT [] xref: BTO:0001004 xref: EFO:0002558 xref: FMA:59790 xref: GAID:938 xref: HOG:0000308 xref: MA:0001585 xref: ncithesaurus:Parotid_Gland is_a: UBERON:0001829 ! major salivary gland relationship: part_of UBERON:0001567 ! cheek [Term] id: UBERON:0001832 name: sublingual gland alt_id: UBERON:FMA_59791-MA_0001588 def: "." [Wikipedia:Sublingual_gland] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ductus sublingualis" EXACT [] synonym: "ductus sublingualis" EXACT [] synonym: "Rivinus' gland" EXACT [] synonym: "rivinus' gland" EXACT [] synonym: "Sublingual gland" EXACT [] xref: BTO:0001315 xref: FMA:59791 xref: GAID:941 xref: HOG:0000363 xref: MA:0001588 is_a: UBERON:0001829 ! major salivary gland [Term] id: UBERON:0001833 name: lip alt_id: UBERON:FMA_59816-ZFA_0007006 def: "One of the two fleshy folds which surround the opening of the mouth. http://www.medterms.com/script/main/art.asp?articlekey=9458" [Wikipedia:Lip, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lip" EXACT [] synonym: "lips" RELATED [] xref: BTO:0001647 xref: FMA:59816 xref: GAID:76 xref: HOG:0000677 xref: MA:0000343 xref: ncithesaurus:Lip xref: OpenCyc:Mx4rvVi4U5wpEbGdrcN5Y29ycA xref: TAO:0007006 xref: ZFA:0007006 is_a: UBERON:0003102 ! surface structure relationship: surrounds UBERON:0000166 ! oral opening [Term] id: UBERON:0001834 name: upper lip alt_id: UBERON:FMA_59817-MA_0000919 def: "." [Wikipedia:Upper_lip] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Upper lip" EXACT [] xref: FMA:59817 xref: MA:0000919 xref: OpenCyc:Mx4rvWPv7pwpEbGdrcN5Y29ycA xref: ZFA:0005226 is_a: UBERON:0001833 ! lip [Term] id: UBERON:0001835 name: lower lip alt_id: UBERON:FMA_59818-MA_0000921 def: "." [Wikipedia:Lower_lip] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lower lip" EXACT [] xref: FMA:59818 xref: MA:0000921 xref: OpenCyc:Mx4rv842UpwpEbGdrcN5Y29ycA xref: ZFA:0005225 is_a: UBERON:0001833 ! lip [Term] id: UBERON:0001836 name: saliva alt_id: UBERON:FMA_59862-MA_0002507 def: "In humans, the saliva is a turbid and slightly viscous fluid, generally of an alkaline reaction, and is secreted by the parotid, submaxillary, and sublingual glands. In the mouth the saliva is mixed with the secretion from the buccal glands. In man and many animals, saliva is an important digestive fluid on account of the presence of the peculiar enzyme, ptyalin[GO]." [GO:0046541, Wikipedia:Saliva] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0001202 xref: ENVO:02000036 xref: FMA:59862 xref: GAID:1167 xref: MA:0002507 xref: MAT:0000444 xref: ncithesaurus:Saliva xref: OpenCyc:Mx4rvVjJ95wpEbGdrcN5Y29ycA is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001837 name: duct of salivary gland alt_id: UBERON:FMA_59908-MA_0001586 def: "." [Wikipedia:Salivary_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Duct of salivary gland" EXACT [] synonym: "Salivary duct" EXACT [] synonym: "salivary duct" EXACT [] synonym: "Salivary gland duct" EXACT [] synonym: "salivary gland duct" EXACT [] xref: FMA:59908 xref: GAID:939 xref: MA:0001586 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0001044 ! salivary gland [Term] id: UBERON:0001838 name: sublingual duct alt_id: UBERON:FMA_59983-MA_0002699 def: "." [Wikipedia:Sublingual_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sublingual duct" EXACT [] xref: FMA:59983 xref: MA:0002699 is_a: UBERON:0001837 ! duct of salivary gland relationship: part_of UBERON:0001832 ! sublingual gland [Term] id: UBERON:0001839 name: bony labyrinth alt_id: UBERON:FMA_60179-MA_0000238-XAO_0000193 def: "." [Wikipedia:Bony_labyrinth] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bony labyrinth" EXACT [] synonym: "Osseous labyrinth" EXACT [] synonym: "osseous labyrinth" EXACT [] synonym: "osseus labyrinth" RELATED [] xref: FMA:60179 xref: MA:0000238 xref: ncithesaurus:Osseous_Labyrinth xref: XAO:0000193 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001694 ! petrous part of temporal bone relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0001840 name: semicircular canal alt_id: UBERON:FMA_60186-MA_0000249-XAO_0000198-ZFA_0000431 def: "Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Semicircular_canal, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "scc" RELATED [] synonym: "Semicircular canal" EXACT [] synonym: "semicircular canals" RELATED [] synonym: "semicircular duct" RELATED [] xref: BTO:0003383 xref: FMA:60186 xref: GAID:776 xref: HOG:0001144 xref: MA:0000249 xref: ncithesaurus:Semicircular_Canal xref: TAO:0000431 xref: XAO:0000198 xref: ZFA:0000431 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001839 ! bony labyrinth [Term] id: UBERON:0001841 name: anterior semicircular canal alt_id: UBERON:FMA_60187-MA_0001207-ZFA_0000314 def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Anterior_semicircular_canal, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anterior semicircular canal" EXACT [] synonym: "anterior semicircular canals" RELATED [] synonym: "anterior semicircular duct" RELATED [] synonym: "rostral vertical semicircular canal" RELATED [] synonym: "Superior semicircular canal" EXACT [] synonym: "superior semicircular canal" EXACT [] xref: EHDAA:7802 xref: FMA:60187 xref: MA:0001207 xref: ncithesaurus:Superior_Semicircular_Canal xref: TAO:0000314 xref: ZFA:0000314 is_a: UBERON:0001840 ! semicircular canal relationship: part_of UBERON:0001840 ! semicircular canal [Term] id: UBERON:0001842 name: posterior semicircular canal alt_id: UBERON:FMA_60190-MA_0001209-ZFA_0000262 def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Posterior_semicircular_canal, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "caudal vertical semicircular canal" RELATED [] synonym: "Posterior semicircular canal" EXACT [] synonym: "posterior semicircular canals" RELATED [] synonym: "posterior semicircular duct" RELATED [] xref: EHDAA:7796 xref: FMA:60190 xref: MA:0001209 xref: ncithesaurus:Posterior_Semicircular_Canal xref: TAO:0000262 xref: ZFA:0000262 is_a: UBERON:0001840 ! semicircular canal relationship: part_of UBERON:0001840 ! semicircular canal [Term] id: UBERON:0001843 name: lateral semicircular canal alt_id: UBERON:FMA_60193-MA_0001208-ZFA_0000220 def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [Wikipedia:Lateral_semicircular_canal, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Horizontal semicircular canal" EXACT [] synonym: "horizontal semicircular canal" RELATED [] synonym: "Lateral semicircular canal" EXACT [] synonym: "lateral semicircular canals" RELATED [] synonym: "lateral semicircular duct" RELATED [] xref: EHDAA:7790 xref: FMA:60193 xref: MA:0001208 xref: TAO:0000220 xref: ZFA:0000220 is_a: UBERON:0001840 ! semicircular canal relationship: part_of UBERON:0001840 ! semicircular canal [Term] id: UBERON:0001844 name: cochlea alt_id: UBERON:FMA_60201-MA_0000240-MIAA_0000144-XAO_0000197 def: "." [Wikipedia:Cochlea] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cochlea" EXACT [] synonym: "Cochlear part of bony labyrinth" EXACT [] synonym: "cochlear part of bony labyrinth" EXACT [] synonym: "lagena" EXACT [] xref: AAO:0000253 xref: BTO:0000267 xref: EFO:0000357 xref: FMA:60201 xref: GAID:724 xref: HOG:0000691 xref: MA:0000240 xref: MAT:0000144 xref: MIAA:0000144 xref: ncithesaurus:Cochlea xref: NIF_GrossAnatomy:birnlex_1190 xref: NIF_GrossAnatomy:birnlex_883 xref: TAO:0000374 xref: XAO:0000197 xref: ZFA:0000374 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001839 ! bony labyrinth [Term] id: UBERON:0001845 name: perilymph alt_id: UBERON:FMA_60908-MA_0002529 def: "Transudate contained in the osseous labyrinth outside the membranous labyrinth." [Wikipedia:Perilymph] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Perilymph" EXACT [] xref: FMA:60908 xref: GAID:1185 xref: MA:0002529 xref: ncithesaurus:Perilymph is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001846 name: internal ear alt_id: UBERON:FMA_60909-MA_0000237-MIAA_0000145-XAO_0000192-ZFA_0000217 def: "Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation. // The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)" [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ear" RELATED [] synonym: "Inner Ear" EXACT [] synonym: "inner ear" EXACT [] synonym: "Internal ear" EXACT [] synonym: "labyrinth" RELATED [] synonym: "otic capsule" RELATED [] synonym: "otocyst" RELATED [] xref: AAO:0000238 xref: BTO:0000630 xref: EFO:0001363 xref: EHDAA:504 xref: FMA:60909 xref: galen:InnerEar xref: HOG:0000284 xref: MA:0000237 xref: MAT:0000145 xref: MIAA:0000145 xref: ncithesaurus:Internal_Ear xref: NIF_GrossAnatomy:birnlex_1196 xref: TAO:0000217 xref: XAO:0000192 xref: ZFA:0000217 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0001847 name: lobule of pinna alt_id: UBERON:FMA_60984-MA_0002468 def: "." [Wikipedia:Ear_lobe] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Auricular lobule" EXACT [] synonym: "auricular lobule" EXACT [] synonym: "Ear lobe" EXACT [] synonym: "ear lobe" EXACT [] synonym: "Ear lobule" EXACT [] synonym: "ear lobule" RELATED [] synonym: "Lobe of ear" EXACT [] synonym: "lobe of ear" EXACT [] synonym: "Lobule of auricle" EXACT [] synonym: "lobule of auricle" RELATED [] synonym: "Lobule of auricle of ear" EXACT [] synonym: "lobule of auricle of ear" EXACT [] synonym: "Lobule of pinna" EXACT [] synonym: "Pinna lobule" EXACT [] synonym: "pinna lobule" EXACT [] xref: FMA:60984 xref: MA:0002468 is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0001848 name: auricular cartilage alt_id: UBERON:FMA_61013-MA_0001227 comment: This class was created automatically from a combination of ontologies synonym: "Auricular cartilage" EXACT [] synonym: "Cartilage of pinna" EXACT [] synonym: "cartilage of pinna" EXACT [] xref: FMA:61013 xref: MA:0001227 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0001849 name: membranous labyrinth alt_id: UBERON:FMA_61022-MA_0000242-XAO_0000194 def: "Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left." [Wikipedia:Membranous_labyrinth] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Membranous labyrinth" EXACT [] xref: FMA:61022 xref: HOG:0000729 xref: MA:0000242 xref: ncithesaurus:Membranous_Labyrinth xref: XAO:0000194 is_a: UBERON:0000020 ! implied link automatically realized ! sense organ is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0001850 name: lacrimal duct alt_id: UBERON:FMA_61063-MA_0001295 def: "Organ with organ cavity which connects the vestibule of the conjunctival sac to the nasal cavity. Examples: There are only two lacrimal ducts, the right and the left lacrimal ducts." [Wikipedia:Lacrimal_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lacrimal duct" EXACT [] synonym: "tear duct" RELATED [] xref: FMA:61063 xref: MA:0001295 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0001750 ! lacrimal apparatus [Term] id: UBERON:0001851 name: cortex alt_id: UBERON:FMA_61109-XAO_0000216 def: "Outermost layer of an organ[WP]." [Wikipedia:Cortex_(anatomy)] comment: This class is used in a very general sense subset: uberon_slim synonym: "Cortex" EXACT [] xref: EFO:0000383 xref: FMA:61109 xref: galen:Cortex is_a: UBERON:0000064 ! organ part relationship: surrounds UBERON:0000062 ! organ [Term] id: UBERON:0001852 name: endolymph alt_id: UBERON:FMA_61112-MA_0002528 def: "Transudate contained within the membranous labyrinth." [Wikipedia:Endolymph] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Endolymph" EXACT [] xref: FMA:61112 xref: GAID:1184 xref: MA:0002528 xref: ncithesaurus:Endolymph is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001853 name: utricle of membranous labyrinth alt_id: UBERON:FMA_61113-MA_0000247-XAO_0000195-ZFA_0000700 def: "." [Wikipedia:Utricle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Membranous labyrinth utricle" EXACT [] synonym: "membranous labyrinth utricle" EXACT [] synonym: "Utricle" EXACT [] synonym: "utricle" EXACT [] synonym: "Utricle of membranous labyrinth" EXACT [] synonym: "Utriculus (Labyrinthus vestibularis)" EXACT [] synonym: "utriculus (labyrinthus vestibularis)" EXACT [] xref: BTO:0001807 xref: EHDAA:4726 xref: FMA:61113 xref: HOG:0000289 xref: MA:0000247 xref: ncithesaurus:Utricle xref: TAO:0000700 xref: XAO:0000195 xref: ZFA:0000700 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001862 ! vestibular labyrinth [Term] id: UBERON:0001854 name: saccule of membranous labyrinth alt_id: UBERON:FMA_61116-MA_0000246-ZFA_0000428 def: "." [Wikipedia:Saccule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Membranous labyrinth saccule" EXACT [] synonym: "membranous labyrinth saccule" EXACT [] synonym: "Saccule" EXACT [] synonym: "saccule" EXACT [] synonym: "Saccule of membranous labyrinth" EXACT [] synonym: "Sacculus (Labyrinthus vestibularis)" EXACT [] synonym: "sacculus (labyrinthus vestibularis)" EXACT [] xref: BTO:0001805 xref: EHDAA:4712 xref: FMA:61116 xref: HOG:0000374 xref: MA:0000246 xref: ncithesaurus:Saccule xref: TAO:0000428 xref: ZFA:0000428 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001862 ! vestibular labyrinth [Term] id: UBERON:0001855 name: cochlear duct of membranous labyrinth alt_id: UBERON:FMA_61119-MA_0000243 def: "." [Wikipedia:Cochlear_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cochlear duct" EXACT [] synonym: "cochlear duct" EXACT [] synonym: "Cochlear duct of membranous labyrinth" EXACT [] synonym: "Reissner's canal" EXACT [] synonym: "reissner's canal" EXACT [] xref: BTO:0001692 xref: EHDAA:4718 xref: FMA:61119 xref: GAID:874 xref: HOG:0000507 xref: MA:0000243 xref: ncithesaurus:Cochlear_Duct is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0001844 ! cochlea relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] id: UBERON:0001856 name: semicircular duct alt_id: UBERON:FMA_61122-MA_0000251 comment: This class was created automatically from a combination of ontologies synonym: "membranous semicircular canal" RELATED [] synonym: "Semicircular duct" EXACT [] xref: FMA:61122 xref: HOG:0000238 xref: MA:0000251 xref: ncithesaurus:Semicircular_Duct is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0001840 ! semicircular canal relationship: part_of UBERON:0001862 ! vestibular labyrinth [Term] id: UBERON:0001857 name: anterior semicircular duct alt_id: UBERON:FMA_61123-MA_0001211 comment: This class was created automatically from a combination of ontologies synonym: "Anterior semicircular duct" EXACT [] xref: FMA:61123 xref: HOG:0000246 xref: MA:0001211 is_a: UBERON:0001856 ! semicircular duct [Term] id: UBERON:0001858 name: posterior semicircular duct alt_id: UBERON:FMA_61126-MA_0001214 def: "." [Wikipedia:Posterior_semicircular_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Posterior semicircular duct" EXACT [] xref: FMA:61126 xref: HOG:0000248 xref: MA:0001214 is_a: UBERON:0001856 ! semicircular duct [Term] id: UBERON:0001859 name: lateral semicircular duct alt_id: UBERON:FMA_61129-MA_0001213 def: "." [Wikipedia:Lateral_semicircular_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lateral semicircular duct" EXACT [] xref: FMA:61129 xref: HOG:0000247 xref: MA:0001213 is_a: UBERON:0001856 ! semicircular duct [Term] id: UBERON:0001860 name: endolymphatic duct alt_id: UBERON:FMA_61246-MA_0001187 def: "." [Wikipedia:Endolymphatic_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Endolymphatic duct" EXACT [] xref: FMA:61246 xref: GAID:886 xref: MA:0001187 xref: ZFA:0001705 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0002049 ! vasculature [Term] id: UBERON:0001861 name: ductus reuniens alt_id: UBERON:FMA_61252-MA_0000244 comment: This class was created automatically from a combination of ontologies synonym: "Ductus reuniens" EXACT [] xref: FMA:61252 xref: MA:0000244 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] id: UBERON:0001862 name: vestibular labyrinth alt_id: UBERON:FMA_61255-MA_0000245 comment: This class was created automatically from a combination of ontologies synonym: "vestibular apparatus" RELATED [] synonym: "Vestibular labyrinth" EXACT [] xref: BTO:0001856 xref: FMA:61255 xref: MA:0000245 xref: ncithesaurus:Vestibular_Labyrinth is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] id: UBERON:0001863 name: scala vestibuli alt_id: UBERON:FMA_61269-MA_0001206 def: "." [Wikipedia:Scala_vestibuli] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Scala vestibuli" EXACT [] xref: FMA:61269 xref: MA:0001206 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001844 ! cochlea relationship: part_of UBERON:0002278 ! perilymphatic space [Term] id: UBERON:0001864 name: scala tympani alt_id: UBERON:FMA_61272-MA_0001205 def: "." [Wikipedia:Scala_tympani] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Scala tympani" EXACT [] xref: FMA:61272 xref: GAID:879 xref: MA:0001205 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001844 ! cochlea relationship: part_of UBERON:0002278 ! perilymphatic space [Term] id: UBERON:0001865 name: cartilaginous external acoustic tube alt_id: UBERON:FMA_61289-MA_0001234 comment: This class was created automatically from a combination of ontologies synonym: "Cartilaginous external acoustic meatus" EXACT [] synonym: "cartilaginous external acoustic meatus" EXACT [] synonym: "Cartilaginous external acoustic tube" EXACT [] synonym: "Cartilaginous part of external acoustic meatus" EXACT [] synonym: "cartilaginous part of external acoustic meatus" EXACT [] synonym: "external acoustic meatus cartilaginous part" EXACT [] xref: FMA:61289 xref: MA:0001234 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001352 ! external acoustic meatus [Term] id: UBERON:0001866 name: sebum alt_id: UBERON:FMA_61304-MA_0002538 def: "." [Wikipedia:Sebum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sebum" EXACT [] xref: BTO:0001981 xref: ENVO:02000037 xref: FMA:61304 xref: GAID:1168 xref: MA:0002538 xref: ncithesaurus:Sebum is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001867 name: cartilage of external ear alt_id: UBERON:FMA_61339-MA_0001886 comment: This class was created automatically from a combination of ontologies synonym: "Cartilage of external ear" EXACT [] synonym: "External ear cartilage" EXACT [] synonym: "external ear cartilage" EXACT [] xref: FMA:61339 xref: MA:0001886 xref: ncithesaurus:External_Ear_Cartilage is_a: UBERON:0001996 ! elastic cartilage intersection_of: UBERON:0002418 ! cartilage intersection_of: part_of UBERON:0001691 ! external ear relationship: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0001868 name: skin of chest alt_id: UBERON:FMA_61415-MA_0000553 comment: This class was created automatically from a combination of ontologies synonym: "Chest skin" EXACT [] synonym: "chest skin" EXACT [] synonym: "Skin of chest" EXACT [] xref: FMA:61415 xref: MA:0000553 is_a: UBERON:0001418 ! skin of thorax intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001443 ! chest relationship: part_of UBERON:0001443 ! chest [Term] id: UBERON:0001869 name: cerebral hemisphere alt_id: UBERON:FMA_61817-MA_0000133 def: "One of two bilateral, largely symmetrical organ subdivisions within the telencephalon which contain the cerebral cortex and cerebral white matter." [Wikipedia:Cerebral_hemisphere] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cerebral hemisphere" EXACT [] synonym: "cerebrum" RELATED [] xref: BTO:0000231 xref: EFO:0002521 xref: FMA:61817 xref: galen:CerebralHemisphere xref: MA:0000133 xref: ncithesaurus:Cerebral_Hemisphere is_a: UBERON:0000064 ! organ part is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0001870 name: frontal lobe alt_id: UBERON:FMA_61824-MA_0000905 def: "Frontal lobe is the anterior-most of five lobes of the cerebral hemisphere. It is bounded by the central sulcus on its posterior border and by the longitudinal cerebral fissure on its medial border." [Wikipedia:Frontal_lobe] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Frontal cortex" EXACT [] synonym: "frontal cortex" EXACT [] synonym: "Frontal lobe" EXACT [] synonym: "Frontal region" EXACT [] synonym: "frontal region" EXACT [] xref: BTO:0000484 xref: EFO:0000913 xref: FMA:61824 xref: GAID:674 xref: MA:0000905 xref: MAT:0000505 xref: ncithesaurus:Frontal_Lobe xref: NIF_GrossAnatomy:birnlex_928 xref: OpenCyc:Mx4rv3OJ8JwpEbGdrcN5Y29ycA is_a: UBERON:0000064 ! organ part is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: adjacent_to UBERON:0001871 ! temporal lobe relationship: adjacent_to UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0001871 name: temporal lobe alt_id: UBERON:FMA_61825-MA_0000941 def: "Temporal lobe is the ventrolateral lobe of five lobes comprising each cerebral hemisphere. It is bounded dorsally by the lateral fissure and posteriorly by an arbitrary border shared with the occipital lobe." [Wikipedia:Temporal_lobe] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Temporal cortex" EXACT [] synonym: "temporal cortex" EXACT [] synonym: "Temporal lobe" EXACT [] xref: BTO:0001355 xref: EFO:0000917 xref: FMA:61825 xref: GAID:635 xref: MA:0000941 xref: MAT:0000508 xref: ncithesaurus:Temporal_Lobe xref: NIF_GrossAnatomy:birnlex_1160 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0001872 name: parietal lobe alt_id: UBERON:FMA_61826-MA_0000916 def: "Parietal lobe is the one of five lobes of the cerebral hemisphere which occupies the dorsal-posterior portion of the hemisphere. It is bounded by the central sulcus on its anterior border and and by the longitudinal cerebral fissure on its medial border. Posteriorly it shares an arbitrary border with the occipital lobe." [Wikipedia:Parietal_lobe] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Parietal cortex" EXACT [] synonym: "parietal cortex" EXACT [] synonym: "Parietal lobe" EXACT [] synonym: "Parietal region" EXACT [] synonym: "parietal region" EXACT [] xref: BTO:0001001 xref: EFO:0000914 xref: FMA:61826 xref: GAID:680 xref: MA:0000916 xref: MAT:0000506 xref: ncithesaurus:Parietal_Lobe_of_the_Brain xref: NIF_GrossAnatomy:birnlex_1148 xref: OpenCyc:Mx4rvg-typwpEbGdrcN5Y29ycA is_a: UBERON:0000064 ! organ part is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: adjacent_to UBERON:0001871 ! temporal lobe relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0001873 name: caudate nucleus alt_id: UBERON:FMA_61833-MA_0000894 def: "Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent." [Wikipedia:Caudate_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Caudate nucleus" EXACT [] synonym: "Caudatus" EXACT [] synonym: "caudatus" EXACT [] xref: BTO:0000211 xref: EFO:0000907 xref: FMA:61833 xref: GAID:670 xref: MA:0000894 xref: MAT:0000513 xref: ncithesaurus:Caudate_Nucleus xref: NIF_GrossAnatomy:birnlex_1373 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002435 ! striatum [Term] id: UBERON:0001874 name: putamen alt_id: UBERON:FMA_61834-MA_0000895 def: "Nucleus of brain which lies ventral to the caudate nucleus and internal capsule and medial to the external capsule. The putamen and caudate nucleus together form the dorsal striatum. It is also one of the structures that comprises the basal ganglia. Through various pathways, the putamen is connected to the substantia nigra and globus pallidus. The main function of the putamen is to regulate movements and influence various types of learning. It employs dopamine to perform its functions. The putamen also plays a role in degenerative neurological disorders, such as Parkinson's disease." [Wikipedia:Putamen] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Nucleus putamen" EXACT [] synonym: "nucleus putamen" EXACT [] synonym: "Putamen" EXACT [] xref: FMA:61834 xref: GAID:671 xref: HOG:0001456 xref: MA:0000895 xref: ncithesaurus:Putamen xref: NIF_GrossAnatomy:birnlex_809 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002435 ! striatum [Term] id: UBERON:0001875 name: globus pallidus alt_id: UBERON:FMA_61835-MA_0000890 def: "Nucleus of brain which is located medially to the putamen and laterally to the internal capsule." [Wikipedia:Globus_pallidus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Globus pallidus" EXACT [] synonym: "Paleostriatum" EXACT [] synonym: "paleostriatum" EXACT [] xref: BTO:0002246 xref: EFO:0000905 xref: FMA:61835 xref: GAID:668 xref: MA:0000890 xref: MAT:0000510 xref: ncithesaurus:Globus_Pallidus xref: NIF_GrossAnatomy:birnlex_1234 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0001876 name: amygdala alt_id: UBERON:FMA_61841-MA_0000887-MIAA_0000289 def: "Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lobe [FMA]," [Wikipedia:Amygdala] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Amygdala" EXACT [] synonym: "amygdaloid area" RELATED [] synonym: "Amygdaloid body" EXACT [] synonym: "amygdaloid body" EXACT [] synonym: "Amygdaloid complex" EXACT [] synonym: "amygdaloid complex" EXACT [] synonym: "Amygdaloid nuclear complex" EXACT [] synonym: "amygdaloid nuclear complex" EXACT [] synonym: "Amygdaloid nuclear groups" EXACT [] synonym: "amygdaloid nuclear groups" EXACT [] synonym: "Amygdaloid nucleus" EXACT [] synonym: "amygdaloid nucleus" EXACT [] synonym: "Archistriatum" EXACT [] synonym: "archistriatum" EXACT [] xref: BTO:0001042 xref: EFO:0000252 xref: FMA:61841 xref: GAID:616 xref: HOG:0001277 xref: MA:0000887 xref: MAT:0000289 xref: MIAA:0000289 xref: ncithesaurus:Amygdala xref: NIF_GrossAnatomy:birnlex_1241 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002420 ! basal ganglia [Term] id: UBERON:0001877 name: medial septal nucleus alt_id: UBERON:FMA_61879-MA_0000935 comment: This class was created automatically from a combination of ontologies synonym: "Medial parolfactory nucleus" EXACT [] synonym: "medial parolfactory nucleus" EXACT [] synonym: "Medial septal nucleus" EXACT [] xref: FMA:61879 xref: MA:0000935 xref: NIF_GrossAnatomy:birnlex_1668 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001878 name: septofimbrial nucleus alt_id: UBERON:FMA_61881-MA_0000938 comment: This class was created automatically from a combination of ontologies synonym: "Scattered nucleus of the septum" EXACT [] synonym: "scattered nucleus of the septum" EXACT [] synonym: "Septofimbrial nucleus" EXACT [] xref: FMA:61881 xref: MA:0000938 xref: NIF_GrossAnatomy:birnlex_730 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001879 name: nucleus of diagonal band alt_id: UBERON:FMA_61882-MA_0000936 comment: This class was created automatically from a combination of ontologies synonym: "Diagonal band nucleus" EXACT [] synonym: "diagonal band nucleus" EXACT [] synonym: "Nucleus of diagonal band" EXACT [] synonym: "Nucleus of the diagonal band of Broca" EXACT [] synonym: "nucleus of the diagonal band of broca" EXACT [] synonym: "Olfactory area (Roberts)" EXACT [] synonym: "olfactory area (roberts)" EXACT [] xref: FMA:61882 xref: MA:0000936 xref: NIF_GrossAnatomy:birnlex_719 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001880 name: nucleus of stria terminalis alt_id: UBERON:FMA_61884-MA_0000925 comment: This class was created automatically from a combination of ontologies synonym: "Bed nucleus of stria terminalis" EXACT [] synonym: "bed nucleus of stria terminalis" EXACT [] synonym: "Intercalate nucleus of stria terminalis" EXACT [] synonym: "intercalate nucleus of stria terminalis" EXACT [] synonym: "Nuclei of stria terminalis" EXACT [] synonym: "nuclei of stria terminalis" EXACT [] synonym: "Nucleus of stria terminalis" EXACT [] synonym: "Stria terminalis nucleus" EXACT [] synonym: "stria terminalis nucleus" EXACT [] xref: BTO:0002698 xref: EFO:0001971 xref: FMA:61884 xref: MA:0000925 xref: NIF_GrossAnatomy:birnlex_724 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001881 name: island of calleja alt_id: UBERON:FMA_61888-MA_0000977 def: "." [Wikipedia:Islands_of_Calleja] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Calleja island" EXACT [] synonym: "calleja island" EXACT [] synonym: "Island of Calleja" EXACT [] synonym: "Islands of Calleja" EXACT [] synonym: "islands of Calleja" EXACT [] synonym: "islands of calleja" EXACT [] xref: FMA:61888 xref: GAID:632 xref: MA:0000977 xref: NIF_GrossAnatomy:birnlex_1113 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001883 ! anterior perforated substance [Term] id: UBERON:0001882 name: nucleus accumbens alt_id: UBERON:FMA_61889-MA_0000892 def: "a collection of pleomorphic cells in the caudal part of the anterior horn of the lateral ventricle, in the region of the olfactory tubercle, lying between the head of the caudate nucleus and the anterior perforated substance. It is part of the ventral striatum, a composite structure considered part of the basal ganglia[GO]." [GO:0021768, Wikipedia:Nucleus_accumbens] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Accumbens nucleus" EXACT [] synonym: "accumbens nucleus" EXACT [] synonym: "Colliculus of caudate nucleus" EXACT [] synonym: "colliculus of caudate nucleus" EXACT [] synonym: "Nucleus accumbens" EXACT [] synonym: "Nucleus accumbens septi" EXACT [] synonym: "nucleus accumbens septi" EXACT [] xref: BTO:0001862 xref: EFO:0000906 xref: FMA:61889 xref: GAID:672 xref: MA:0000892 xref: MAT:0000512 xref: ncithesaurus:Accumbens_Nucleus xref: NIF_GrossAnatomy:birnlex_727 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002435 ! striatum [Term] id: UBERON:0001883 name: anterior perforated substance alt_id: UBERON:FMA_61891-MA_0000976 def: "Subdivision of telencephalon which is a region on the ventro-medial aspect of the telencephalon penetrated by numerous blood vessels. It is bounded by the optic tract posteriorly and the olfactory trigone anteriorly." [Wikipedia:Anterior_perforated_substance] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anterior perforated area" EXACT [] synonym: "anterior perforated area" EXACT [] synonym: "Anterior perforated space" EXACT [] synonym: "anterior perforated space" EXACT [] synonym: "Anterior perforated substance" EXACT [] synonym: "Olfactory area (Mai)" EXACT [] synonym: "olfactory area (mai)" EXACT [] synonym: "Olfactory tubercle" EXACT [] synonym: "olfactory tubercle" EXACT [] xref: BTO:0001869 xref: FMA:61891 xref: MA:0000976 xref: NIF_GrossAnatomy:birnlex_1096 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0001884 name: phrenic nerve alt_id: UBERON:FMA_6191-MA_0001170 def: "." [Wikipedia:Phrenic_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Phrenic nerve" EXACT [] xref: BTO:0001063 xref: FMA:6191 xref: GAID:848 xref: HOG:0000728 xref: MA:0001170 xref: ncithesaurus:Phrenic_Nerve is_a: UBERON:0002003 ! peripheral nerve is_a: UBERON:0003443 ! implied link automatically realized ! thoracic cavity nerve relationship: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0001885 name: dentate gyrus of hippocampal formation alt_id: UBERON:FMA_61922-MA_0000190 def: "The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus[GO]." [Wikipedia:Dentate_gyrus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Area dentata" EXACT [] synonym: "area dentata" EXACT [] synonym: "Dentate gyrus" EXACT [] synonym: "dentate gyrus" EXACT [] synonym: "Dentate gyrus of hippocampal formation" EXACT [] synonym: "Fascia dentata" EXACT [] synonym: "fascia dentata" EXACT [] xref: BTO:0002496 xref: EFO:0001366 xref: FMA:61922 xref: GAID:624 xref: MA:0000190 xref: ncithesaurus:Dentate_Gyrus xref: NIF_GrossAnatomy:birnlex_1178 xref: NIF_GrossAnatomy:birnlex_1191 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0003876 ! implied link automatically realized ! hippocampal region relationship: part_of UBERON:0001954 ! hippocampus [Term] id: UBERON:0001886 name: choroid plexus alt_id: UBERON:FMA_61934-MA_0000823-ZFA_0001443 def: "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier." [Wikipedia:Choroid_plexus, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "chorioid plexus of cerebral hemisphere" EXACT [] xref: BTO:0000258 xref: EFO:0001915 xref: FMA:61934 xref: GAID:607 xref: MA:0000823 xref: ncithesaurus:Choroid_Plexus xref: TAO:0001443 xref: ZFA:0001443 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002300 ! ventricle [Term] id: UBERON:0001887 name: internal capsule alt_id: UBERON:FMA_61950-MA_0002748 def: "Internal capsule is an organ subdivision of the telencephalon which is made up primarily of myelinated axonal neural tissue (white matter). The internal capsule is a major set of fiber bundles lateral to the thalamus and caudate nucleus and medial to the putamen and globus pallidus. It projects dorsally to the white matter underlying the cerebral cortex." [Wikipedia:Internal_capsule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Internal capsule" EXACT [] synonym: "Internal capsule radiations" EXACT [] synonym: "internal capsule radiations" EXACT [] xref: FMA:61950 xref: GAID:685 xref: MA:0002748 xref: ncithesaurus:Internal_Capsule xref: NIF_GrossAnatomy:birnlex_1659 is_a: UBERON:0002437 ! cerebral white matter relationship: part_of UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0001888 name: lateral olfactory stria alt_id: UBERON:FMA_61971-ZFA_0000229 def: "." [Wikipedia:Lateral_olfactory_stria] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lateral olfactory stria" EXACT [] synonym: "Lateral olfactory tract" EXACT [] synonym: "lateral olfactory tract" EXACT [] xref: FMA:61971 xref: NIF_GrossAnatomy:birnlex_1559 xref: TAO:0000229 xref: ZFA:0000229 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0001889 name: trunk of phrenic nerve alt_id: UBERON:FMA_6198-MA_0001177 comment: This class was created automatically from a combination of ontologies synonym: "phrenic nerve trunk" EXACT [] synonym: "Phrenic neural trunk" EXACT [] synonym: "phrenic neural trunk" EXACT [] synonym: "Trunk of phrenic nerve" EXACT [] xref: FMA:6198 xref: MA:0001177 is_a: UBERON:0001147 ! trunk of peripheral nerve relationship: part_of UBERON:0001884 ! phrenic nerve [Term] id: UBERON:0001890 name: forebrain alt_id: UBERON:FMA_61992-MA_0000170-MIAA_0000105-XAO_0000011-ZFA_0000109 def: "Organ component of neuraxis that has as its parts the telencephalon, diencephalon, lateral ventricles and third ventricle. Examples: There is only one forebrain. // The most anterior region the brain including both the telencephalon and diencephalon. Kimmel et al, 1995." [Wikipedia:Forebrain, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Forebrain" EXACT [] synonym: "prosencephalon" RELATED [] xref: BTO:0000478 xref: EFO:0000909 xref: EHDAA:3470 xref: FMA:61992 xref: HOG:0000383 xref: MA:0000170 xref: MAT:0000105 xref: MIAA:0000105 xref: NIF_GrossAnatomy:birnlex_1509 xref: TAO:0000109 xref: XAO:0000011 xref: ZFA:0000109 is_a: UBERON:0002616 ! regional part of brain relationship: develops_from UBERON:0003080 ! anterior neural tube relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0001891 name: midbrain alt_id: UBERON:FMA_61993-MA_0000207-MIAA_0000106-XAO_0000014-ZFA_0000128 def: "Organ component of neuraxis that has as its parts the tectum, cerebral peduncle, midbrain tegmentum and cerebral aqueduct. Examples: There is only one midbrain. [FMA]// The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally. Kimmel et al, 1995." [Wikipedia:Midbrain, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "mesencephalon" RELATED [] synonym: "Midbrain" EXACT [] xref: BTO:0000138 xref: EFO:0000919 xref: EHDAA:3694 xref: FMA:61993 xref: HOG:0000069 xref: MA:0000207 xref: MAT:0000106 xref: MIAA:0000106 xref: NIF_GrossAnatomy:birnlex_1667 xref: TAO:0000128 xref: XAO:0000014 xref: ZFA:0000128 is_a: UBERON:0002616 ! regional part of brain relationship: develops_from UBERON:0003080 ! anterior neural tube relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:0001892 name: rhombomere alt_id: UBERON:FMA_61998-MIAA_0000272-ZFA_0001064 def: "A segment of the developing hindbrain[ZFA]" [Wikipedia:Rhombomere, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "future rhombencephalon" RELATED [MIAA:0000272] synonym: "Hindbrain segment" EXACT [] synonym: "hindbrain segment" RELATED [] synonym: "rhombomere" EXACT [] synonym: "rhombomeres" RELATED [] synonym: "Segment of hindbrain" EXACT [] xref: FMA:61998 xref: HOG:0000672 xref: MAT:0000272 xref: MIAA:0000272 xref: TAO:0001064 xref: ZFA:0001064 is_a: UBERON:0000073 ! regional part of nervous system is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0001893 name: telencephalon alt_id: UBERON:FMA_6200-FMA_62000-MA_0000183-MIAA_0000421-XAO_0000012-ZFA_0000079 def: "Organ component of neuraxis that has as its parts the cerebral cortex, cerebral white matter, basal ganglia, septum and fornix, as well as subcortical gray and white matter structures. There is only one telencephalon. // The anterior and dorsal forebrain neuromere, includes the olfactory bulb. Kimmel et al, 1995." [Wikipedia:Telencephalon, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cerebrum" RELATED [] synonym: "telencephalic vesicle" RELATED [] synonym: "Telencephalon" EXACT [] synonym: "telencephalon" EXACT [] xref: BTO:0000239 xref: EFO:0000912 xref: FMA:62000 xref: GAID:621 xref: HOG:0000283 xref: MA:0000183 xref: MAT:0000421 xref: MIAA:0000421 xref: NIF_GrossAnatomy:birnlex_1115 xref: TAO:0000079 xref: XAO:0000012 xref: ZFA:0000079 is_a: UBERON:0002780 ! regional part of forebrain relationship: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0001894 name: diencephalon alt_id: UBERON:FMA_62001-MA_0000171-MIAA_0000420-XAO_0000013-ZFA_0000101 def: "Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus. There is only one diencephalon. // The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995." [Wikipedia:Diencephalon, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Between brain" EXACT [] synonym: "between brain" EXACT [] synonym: "Diencephalon" EXACT [] synonym: "Interbrain" EXACT [] synonym: "interbrain" EXACT [] synonym: "Mature diencephalon" EXACT [] synonym: "mature diencephalon" EXACT [] xref: BTO:0000342 xref: EFO:0000911 xref: EHDAA:1969 xref: EHDAA:2645 xref: EHDAA:3472 xref: FMA:62001 xref: GAID:618 xref: HOG:0000318 xref: MA:0000171 xref: MAT:0000420 xref: MIAA:0000420 xref: ncithesaurus:Diencephalon xref: NIF_GrossAnatomy:birnlex_1503 xref: TAO:0000101 xref: XAO:0000013 xref: ZFA:0000101 is_a: UBERON:0002780 ! regional part of forebrain relationship: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0001895 name: metencephalon alt_id: UBERON:FMA_62003-MA_0000197 def: "Rostral segment of the hindbrain that has as its parts the pons and the cerebellum." [Wikipedia:Metencephalon] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Epencephalon-2" EXACT [] synonym: "epencephalon-2" EXACT [] synonym: "Metencephalon" EXACT [] xref: BTO:0000673 xref: EHDAA:5498 xref: FMA:62003 xref: GAID:594 xref: HOG:0000741 xref: MA:0000197 xref: NIF_GrossAnatomy:birnlex_965 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0001896 name: medulla oblongata alt_id: UBERON:FMA_62004-MA_0000206-MIAA_0000111-XAO_0003100-ZFA_0000545 def: "Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures. Examples: There is only one medulla oblongata[FMA]. The medulla oblongata lies directly above the spinal cord and controls vital autonomic functions such as digestion, breathing and the control of heart rate[GO]." [FMA:62004, GO:0021550, Wikipedia:Medulla_oblongata] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "brainstem" RELATED [] synonym: "Bulb" EXACT [] synonym: "bulb" EXACT [] synonym: "Medulla oblongata" EXACT [] synonym: "medulla oblonmgata" EXACT [] synonym: "Metepencephalon" EXACT [] synonym: "metepencephalon" EXACT [] xref: BTO:0000041 xref: BTO:0000159 xref: EFO:0000924 xref: EHDAA:7588 xref: FMA:62004 xref: GAID:590 xref: HOG:0000181 xref: MA:0000206 xref: MAT:0000111 xref: MAT:0000367 xref: MIAA:0000111 xref: ncithesaurus:Medulla_Oblongata xref: NIF_GrossAnatomy:birnlex_957 xref: OpenCyc:Mx4rvVjxSJwpEbGdrcN5Y29ycA xref: TAO:0000545 xref: XAO:0003100 xref: ZFA:0000545 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0002028 ! hindbrain relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:0001897 name: thalamus alt_id: UBERON:FMA_62007-MA_0000179-MIAA_0000109-ZFA_0001215 def: "." [Wikipedia:Thalamus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Dorsal thalamus" EXACT [] synonym: "dorsal thalamus" EXACT [] synonym: "Dorsal thalamus (Anthoney)" EXACT [] synonym: "dorsal thalamus (anthoney)" EXACT [] synonym: "future thalamus" BROAD [] synonym: "Thalamus" EXACT [] xref: BTO:0001365 xref: EFO:0000910 xref: FMA:62007 xref: GAID:656 xref: HOG:0000657 xref: MA:0000179 xref: MAT:0000109 xref: MIAA:0000109 xref: ncithesaurus:Thalamus xref: NIF_GrossAnatomy:birnlex_954 xref: TAO:0001215 xref: ZFA:0001215 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0001898 name: hypothalamus alt_id: UBERON:FMA_62008-MA_0000173-MIAA_0000112-ZFA_0000032 def: "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. [ZFA]. One of the most important functions of the hypothalamus is to link the nervous system to the endocrine system via the pituitary gland (hypophysis).[Wikipedia]." [Wikipedia:Hypothalamus, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hypothalamus" EXACT [] synonym: "Preoptico-hypothalamic area" EXACT [] synonym: "preoptico-hypothalamic area" EXACT [] synonym: "Preoptico-hypothalamic region" EXACT [] synonym: "preoptico-hypothalamic region" EXACT [] xref: BTO:0000614 xref: EFO:0000107 xref: EHDAA:5446 xref: FMA:62008 xref: GAID:460 xref: galen:Hypothalamus xref: HOG:0000179 xref: MA:0000173 xref: MAT:0000112 xref: MIAA:0000112 xref: ncithesaurus:Hypothalamus xref: NIF_GrossAnatomy:birnlex_734 xref: TAO:0000032 xref: ZFA:0000032 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0001899 name: epithalamus alt_id: UBERON:FMA_62009-MA_0000172-MIAA_0000422-ZFA_0000509 def: "The epithalamus is the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle[GO]." [Wikipedia:Epithalamus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Epithalamus" EXACT [] xref: BTO:0000175 xref: EFO:0000918 xref: EHDAA:5433 xref: FMA:62009 xref: GAID:455 xref: HOG:0000178 xref: MA:0000172 xref: MAT:0000422 xref: MIAA:0000422 xref: ncithesaurus:Epithalamus xref: NIF_GrossAnatomy:birnlex_1710 xref: TAO:0000509 xref: ZFA:0000509 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0001900 name: subthalamus alt_id: UBERON:FMA_62010-MA_0000181-ZFA_0000458 def: "Anterior part of the diencephalon that lies between the thalamus, hypothalamus, and tegmentum of the mesencephalon, including subthalamic nucleus, zona incerta, the fields of Forel, and the nucleus of ansa lenticularis." [GO:0021539, Wikipedia:Subthalamus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "prethalamus" RELATED [] synonym: "Subthalamic region" EXACT [] synonym: "subthalamic region" EXACT [] synonym: "Subthalamus" EXACT [] synonym: "Ventral thalamus" EXACT [] synonym: "ventral thalamus" EXACT [] xref: FMA:62010 xref: GAID:653 xref: MA:0000181 xref: ncithesaurus:Ventral_Thalamus xref: NIF_GrossAnatomy:birnlex_708 xref: TAO:0000458 xref: ZFA:0000458 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus relationship: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0001901 name: epithelium of trachea alt_id: UBERON:0003227 alt_id: UBERON:FMA_62015-MA_0001862 comment: This class was created automatically from a combination of ontologies synonym: "Epithelium of trachea" EXACT [] synonym: "trachea epithelium" EXACT [] synonym: "Tracheal epithelium" EXACT [] synonym: "tracheal epithelium" EXACT [] xref: BTO:0001389 xref: EHDAA:5007 xref: FMA:62015 xref: HOG:0001045 xref: MA:0001862 xref: ncithesaurus:Tracheal_Epithelium is_a: UBERON:0000485 ! simple columnar epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001005 ! trachea relationship: part_of UBERON:0001005 ! trachea [Term] id: UBERON:0001902 name: epithelium of small intestine alt_id: UBERON:FMA_62017-MA_0001553 comment: This class was created automatically from a combination of ontologies synonym: "Epithelium of small intestine" EXACT [] synonym: "Small intestinal epithelium" EXACT [] synonym: "small intestinal epithelium" EXACT [] synonym: "small intestine epithelium" EXACT [] xref: BTO:0001258 xref: FMA:62017 xref: MA:0001553 xref: ZFA:0005127 is_a: UBERON:0001277 ! intestinal epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002108 ! small intestine relationship: part_of UBERON:0001204 ! mucosa of small intestine [Term] id: UBERON:0001903 name: thalamic reticular nucleus alt_id: UBERON:FMA_62026-MA_0000876 def: "." [Wikipedia:Thalamic_reticular_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Reticular nuclear group" EXACT [] synonym: "reticular nuclear group" EXACT [] synonym: "Reticular nucleus of thalamus" EXACT [] synonym: "reticular nucleus of thalamus" EXACT [] synonym: "Reticular nucleus of the thalamus" EXACT [] synonym: "reticular nucleus of the thalamus" EXACT [] synonym: "Reticular nucleus-2" EXACT [] synonym: "reticular nucleus-2" EXACT [] synonym: "Reticular thalamic nucleus" EXACT [] synonym: "reticular thalamic nucleus" EXACT [] synonym: "Thalamic reticular nucleus" EXACT [] xref: FMA:62026 xref: MA:0000876 xref: NIF_GrossAnatomy:birnlex_1721 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus relationship: part_of UBERON:0001900 ! subthalamus [Term] id: UBERON:0001904 name: habenula alt_id: UBERON:FMA_62032-MA_0000830-ZFA_0000213 def: "Habenula is an segment of the epithalamus that has as its parts the lateral and medial habenular nuclei and the habenular commissure. // The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus." [Wikipedia:Habenula, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Habenula" EXACT [] synonym: "habenulae" RELATED [] synonym: "Habenular nuclei" EXACT [] synonym: "habenular nuclei" EXACT [] synonym: "habenular nucleus" RELATED [] xref: BTO:0003684 xref: FMA:62032 xref: GAID:619 xref: MA:0000830 xref: NIF_GrossAnatomy:birnlex_1611 xref: TAO:0000213 xref: ZFA:0000213 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus relationship: part_of UBERON:0001899 ! epithalamus [Term] id: UBERON:0001905 name: pineal body alt_id: UBERON:FMA_62033-MA_0000175-XAO_0000160 def: "Pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus." [Wikipedia:Pineal_body] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "corpus pineale" RELATED [] synonym: "epiphysis" RELATED [ZFA:0000019] synonym: "epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri] synonym: "Pineal body" EXACT [] synonym: "Pineal gland" EXACT [] synonym: "pineal gland" EXACT [] xref: BTO:0001067 xref: EFO:0000865 xref: EHDAA:7523 xref: FMA:62033 xref: GAID:453 xref: HOG:0000051 xref: MA:0000175 xref: MAT:0000448 xref: ncithesaurus:Pineal_Gland xref: NIF_GrossAnatomy:birnlex_1184 xref: OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA xref: XAO:0000160 xref: ZFA:0000019 is_a: UBERON:0002530 ! gland is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003296 ! implied link automatically realized ! gland of diencephalon relationship: part_of UBERON:0000949 ! endocrine system relationship: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001899 ! epithalamus [Term] id: UBERON:0001906 name: subthalamic nucleus alt_id: UBERON:FMA_62035-MA_0000877 def: "The subthalamic nucleus is the lens-shaped nucleus located in the ventral part of the subthalamus on the inner aspect of the internal capsule that is concerned with the integration of somatic motor function[GO]." [Wikipedia:Subthalamic_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Body of Forel" EXACT [] synonym: "body of forel" EXACT [] synonym: "Body of Luys" EXACT [] synonym: "body of luys" EXACT [] synonym: "Nucleus of Corpus Luysii" EXACT [] synonym: "nucleus of corpus luysii" EXACT [] synonym: "Nucleus of Luys" EXACT [] synonym: "nucleus of luys" EXACT [] synonym: "Subthalamic nucleus" EXACT [] synonym: "Subthalamic nucleus (of Luys)" EXACT [] synonym: "subthalamic nucleus (of luys)" EXACT [] xref: BTO:0002252 xref: EFO:0001392 xref: FMA:62035 xref: GAID:655 xref: MA:0000877 xref: ncithesaurus:Subthalamic_Nucleus is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus relationship: part_of UBERON:0001900 ! subthalamus [Term] id: UBERON:0001907 name: zona incerta alt_id: UBERON:FMA_62038-MA_0000878 def: "." [Wikipedia:Zona_incerta] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Zona incerta" EXACT [] xref: BTO:0003146 xref: FMA:62038 xref: MA:0000878 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus relationship: part_of UBERON:0001900 ! subthalamus [Term] id: UBERON:0001908 name: optic tract alt_id: UBERON:FMA_62046-ZFA_0000252 def: "Nerve trunk which is continuous with the optic chiasm and the lateral geniculate nucleus. // Axon tract which is comprised of retinal ganglion cell axons after which they have passed through the optic chiasm." [Wikipedia:Optic_tract, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Optic lemniscus" EXACT [] synonym: "optic lemniscus" EXACT [] synonym: "Optic tract" EXACT [] xref: FMA:62046 xref: HOG:0001164 xref: MA:0001099 xref: ncithesaurus:Optic_Tract xref: NIF_GrossAnatomy:birnlex_1684 xref: TAO:0000252 xref: ZFA:0000252 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0001018 ! implied link automatically realized ! axon tract is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon intersection_of: UBERON:0001018 ! axon tract intersection_of: part_of UBERON:0000970 ! eye relationship: continuous_with UBERON:0000959 ! optic chiasma relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0001909 name: habenular commissure alt_id: UBERON:FMA_62048-ZFA_0000359 def: "." [Wikipedia:Habenular_commissure] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Habenular commissure" EXACT [] xref: FMA:62048 xref: NIF_GrossAnatomy:birnlex_1609 xref: TAO:0000359 xref: ZFA:0000359 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus relationship: part_of UBERON:0001904 ! habenula [Term] id: UBERON:0001910 name: medial forebrain bundle alt_id: UBERON:FMA_62064-ZFA_0005111 def: "." [Wikipedia:Medial_forebrain_bundle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Medial forebrain bundle" EXACT [] synonym: "Medial forebrain fasciculus" EXACT [] synonym: "medial forebrain fasciculus" EXACT [] synonym: "Telencephalic medial fasciculus" EXACT [] synonym: "telencephalic medial fasciculus" EXACT [] xref: FMA:62064 xref: GAID:736 xref: ncithesaurus:Medial_Forebrain_Bundle xref: NIF_GrossAnatomy:birnlex_908 xref: TAO:0005111 xref: ZFA:0005111 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0001911 name: lactiferous gland alt_id: UBERON:FMA_62088-MA_0000145-MIAA_0000073-Mammary def: "Lobular organ which consist of a lactiferous duct tree and the set of lactiferous acini that are connected to duct tree. Examples: There are variable numbers of lactiferous duct trees." [Wikipedia:Mammary_gland] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lactiferous gland" EXACT [] synonym: "Lobe of breast" EXACT [] synonym: "lobe of breast" EXACT [] synonym: "Lobe of mammary gland" EXACT [] synonym: "lobe of mammary gland" EXACT [] synonym: "mammary gland" EXACT [] xref: BTO:0000817 xref: EFO:0000854 xref: EHDAA:6524 xref: FMA:62088 xref: HOG:0000398 xref: MA:0000145 xref: MAT:0000073 xref: MIAA:0000073 xref: ncithesaurus:Mammary_Gland xref: NULL:Mammary xref: OpenCyc:Mx4rvVjVq5wpEbGdrcN5Y29ycA is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0001912 name: lobule of lactiferous gland alt_id: UBERON:FMA_62090-MA_0000793 def: "Organ component of the mammary gland which consists of an aggregate of mammary alveoli that communicate with a lobular lactiferous duct." [] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Acinus of mammary gland" EXACT [] synonym: "acinus of mammary gland" EXACT [] synonym: "Lactiferous acinus" EXACT [] synonym: "lactiferous acinus" EXACT [] synonym: "Lactiferous gland lobule" EXACT [] synonym: "lactiferous gland lobule" EXACT [] synonym: "Lactiferous lobule" EXACT [] synonym: "lactiferous lobule" EXACT [] synonym: "Lobule of lactiferous gland" EXACT [] synonym: "Lobule of mammary gland" EXACT [] synonym: "lobule of mammary gland" EXACT [] synonym: "Mammary acinus" EXACT [] synonym: "mammary acinus" EXACT [] synonym: "mammary gland lobule" EXACT [] xref: FMA:62090 xref: MA:0000793 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001911 ! lactiferous gland [Term] id: UBERON:0001913 name: milk alt_id: UBERON:FMA_62100-MA_0002552-MIAA_0000056 def: "Secretion produced by the mammary gland." [Wikipedia:Breast_milk] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "mammary gland milk" EXACT [] synonym: "Milk" EXACT [] xref: BTO:0000868 xref: ENVO:02000031 xref: FMA:62100 xref: GAID:1230 xref: HOG:0001263 xref: MA:0002552 xref: MAT:0000056 xref: MIAA:0000056 xref: ncithesaurus:Milk xref: OpenCyc:Mx4rvVjGZJwpEbGdrcN5Y29ycA is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001914 name: colostrum alt_id: UBERON:FMA_62101-MA_0002551 def: "." [Wikipedia:Colostrum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Colostrum" EXACT [] xref: BTO:0000276 xref: FMA:62101 xref: GAID:1159 xref: MA:0002551 xref: ncithesaurus:Colostrum is_a: UBERON:0001913 ! milk [Term] id: UBERON:0001915 name: endothelium of capillary alt_id: UBERON:FMA_62114-MA_0000711 comment: This class was created automatically from a combination of ontologies synonym: "Capillary endothelium" EXACT [] synonym: "capillary endothelium" EXACT [] synonym: "Endothelium of capillary" EXACT [] xref: FMA:62114 xref: MA:0000711 xref: ncithesaurus:Capillary_Endothelium is_a: UBERON:0001986 ! endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0001982 ! capillary relationship: part_of UBERON:0001982 ! capillary [Term] id: UBERON:0001916 name: endothelium of arteriole alt_id: UBERON:FMA_62115-MA_0000705 comment: This class was created automatically from a combination of ontologies synonym: "Arteriole endothelium" EXACT [] synonym: "arteriole endothelium" EXACT [] synonym: "Endothelium of arteriole" EXACT [] xref: FMA:62115 xref: MA:0000705 xref: ncithesaurus:Arteriole_Endothelium is_a: UBERON:0001986 ! endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0001980 ! arteriole relationship: part_of UBERON:0001980 ! arteriole [Term] id: UBERON:0001917 name: endothelium of artery alt_id: UBERON:FMA_62116-MA_0000707-XAO_0000357 comment: This class was created automatically from a combination of ontologies synonym: "Arterial endothelium" EXACT [] synonym: "arterial endothelium" EXACT [] synonym: "artery endothelium" EXACT [] synonym: "Endothelium of artery" EXACT [] xref: FMA:62116 xref: HOG:0001215 xref: MA:0000707 xref: ncithesaurus:Artery_Endothelium xref: XAO:0000357 is_a: UBERON:0001986 ! endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0001637 ! artery relationship: part_of UBERON:0001637 ! artery [Term] id: UBERON:0001918 name: endothelium of venule alt_id: UBERON:FMA_62117-MA_0000716 comment: This class was created automatically from a combination of ontologies synonym: "Endothelium of venule" EXACT [] synonym: "Venule endothelium" EXACT [] synonym: "venule endothelium" EXACT [] xref: FMA:62117 xref: MA:0000716 xref: ncithesaurus:Venule_Endothelium is_a: UBERON:0001986 ! endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0001979 ! venule relationship: part_of UBERON:0001979 ! venule [Term] id: UBERON:0001919 name: endothelium of vein alt_id: UBERON:FMA_62118-MA_0000712 comment: This class was created automatically from a combination of ontologies synonym: "Endothelium of vein" EXACT [] synonym: "vein endothelium" EXACT [] synonym: "Venous endothelium" EXACT [] synonym: "venous endothelium" EXACT [] xref: FMA:62118 xref: HOG:0001216 xref: MA:0000712 xref: ncithesaurus:Vein_Endothelium is_a: UBERON:0001986 ! endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0001638 ! vein [Term] id: UBERON:0001920 name: paraventricular nucleus of thalamus alt_id: UBERON:FMA_62152-MA_0000866 def: "." [Wikipedia:Paraventricular_nuclei] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Paraventricular gray" EXACT [] synonym: "paraventricular gray" EXACT [] synonym: "Paraventricular nuclei" EXACT [] synonym: "paraventricular nuclei" EXACT [] synonym: "Paraventricular nuclei of thalamus" EXACT [] synonym: "paraventricular nuclei of thalamus" EXACT [] synonym: "Paraventricular nucleus of thalamus" EXACT [] synonym: "Paraventricular thalamic nucleus" EXACT [] synonym: "paraventricular thalamic nucleus" EXACT [] xref: FMA:62152 xref: MA:0000866 xref: NIF_GrossAnatomy:birnlex_764 is_a: UBERON:0001930 ! paraventricular nucleus of hypothalamus is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus intersection_of: UBERON:0001930 ! paraventricular nucleus of hypothalamus intersection_of: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0001921 name: reuniens nucleus alt_id: UBERON:FMA_62153-MA_0000865 comment: This class was created automatically from a combination of ontologies synonym: "Medioventral nucleus" EXACT [] synonym: "medioventral nucleus" EXACT [] synonym: "nucleus reuniens" EXACT [] synonym: "Reuniens nucleus" EXACT [] synonym: "Reuniens thalamic nucleus" EXACT [] synonym: "reuniens thalamic nucleus" EXACT [] xref: BTO:0002459 xref: FMA:62153 xref: MA:0000865 xref: NIF_GrossAnatomy:birnlex_770 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001922 name: parafascicular nucleus alt_id: UBERON:FMA_62166-MA_0000874 comment: This class was created automatically from a combination of ontologies synonym: "Parafascicular nucleus" EXACT [] synonym: "Parafascicular nucleus of thalamus" EXACT [] synonym: "parafascicular nucleus of thalamus" EXACT [] synonym: "Parafascicular thalamic nucleus" EXACT [] synonym: "parafascicular thalamic nucleus" EXACT [] xref: FMA:62166 xref: MA:0000874 xref: NIF_GrossAnatomy:birnlex_952 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001923 name: central medial nucleus alt_id: UBERON:FMA_62171-MA_0000872 comment: This class was created automatically from a combination of ontologies synonym: "Central medial nucleus" EXACT [] synonym: "Central medial nucleus of thalamus" EXACT [] synonym: "central medial nucleus of thalamus" EXACT [] synonym: "Central medial thalamic nucleus" EXACT [] synonym: "central medial thalamic nucleus" EXACT [] xref: BTO:0003753 xref: FMA:62171 xref: MA:0000872 xref: NIF_GrossAnatomy:birnlex_971 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001924 name: paracentral nucleus alt_id: UBERON:FMA_62172-MA_0000873 comment: This class was created automatically from a combination of ontologies synonym: "Paracentral nucleus" EXACT [] synonym: "Paracentral nucleus of thalamus" EXACT [] synonym: "paracentral nucleus of thalamus" EXACT [] synonym: "Paracentral thalamic nucleus" EXACT [] synonym: "paracentral thalamic nucleus" EXACT [] xref: FMA:62172 xref: MA:0000873 xref: NIF_GrossAnatomy:birnlex_981 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001925 name: ventral lateral nucleus alt_id: UBERON:FMA_62186-ZFA_0000306 def: "." [Wikipedia:Ventral_lateral_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lateral ventral nucleus of thalamus" EXACT [] synonym: "lateral ventral nucleus of thalamus" EXACT [] synonym: "Ventral lateral complex of thalamus" EXACT [] synonym: "ventral lateral complex of thalamus" EXACT [] synonym: "Ventral lateral nucleus" EXACT [] synonym: "Ventral lateral nucleus of thalamus" EXACT [] synonym: "ventral lateral nucleus of thalamus" EXACT [] synonym: "Ventral lateral thalamic nuclei" EXACT [] synonym: "ventral lateral thalamic nuclei" EXACT [] synonym: "Ventrolateral thalamic nucleus" EXACT [] synonym: "ventrolateral thalamic nucleus" EXACT [] xref: BTO:0002463 xref: FMA:62186 xref: NIF_GrossAnatomy:birnlex_1237 xref: TAO:0000306 xref: ZFA:0000306 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus relationship: part_of UBERON:0001900 ! subthalamus [Term] id: UBERON:0001926 name: lateral geniculate body alt_id: UBERON:FMA_62209-MA_0000869 def: "The lateral geniculate nucleus is the primary processor of visual information received from the retina[GO]." [Wikipedia:Lateral_geniculate_body] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lateral geniculate body" EXACT [] synonym: "Lateral geniculate complex" EXACT [] synonym: "lateral geniculate complex" EXACT [] synonym: "Lateral geniculate nucleus" EXACT [] synonym: "lateral geniculate nucleus" EXACT [] xref: EFO:0001988 xref: FMA:62209 xref: MA:0000869 xref: NIF_GrossAnatomy:birnlex_1662 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus relationship: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0001927 name: medial geniculate body alt_id: UBERON:FMA_62211-MA_0000870 def: "." [Wikipedia:Medial_geniculate_body] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Medial geniculate body" EXACT [] synonym: "Medial geniculate complex" EXACT [] synonym: "medial geniculate complex" EXACT [] synonym: "Medial geniculate nuclei" EXACT [] synonym: "medial geniculate nuclei" EXACT [] synonym: "Medial geniculate nucleus" EXACT [] synonym: "medial geniculate nucleus" EXACT [] xref: BTO:0002674 xref: EFO:0001968 xref: FMA:62211 xref: MA:0000870 xref: NIF_GrossAnatomy:birnlex_1670 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0001928 name: preoptic area alt_id: UBERON:FMA_62313-ZFA_0000470 def: "Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus. See Figure 7, Atlas of Early Zebrafish Brain Development." [Wikipedia:Preoptic_area, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "area praeoptica" RELATED [] synonym: "area preoptica" RELATED [] synonym: "Preoptic area" EXACT [] synonym: "Preoptic nuclei" EXACT [] synonym: "preoptic nuclei" EXACT [] synonym: "preoptic region" RELATED [] synonym: "Preoptic region of hypothalamus" EXACT [] synonym: "preoptic region of hypothalamus" EXACT [] xref: BTO:0001796 xref: EFO:0002523 xref: FMA:62313 xref: GAID:644 xref: NIF_GrossAnatomy:birnlex_1706 xref: TAO:0000470 xref: ZFA:0000470 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0001929 name: supraoptic nucleus alt_id: UBERON:FMA_62317-MA_0000849 def: "." [Wikipedia:Supraoptic_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Supra-optic nucleus" EXACT [] synonym: "supra-optic nucleus" EXACT [] synonym: "Supraoptic nucleus" EXACT [] synonym: "Supraoptic nucleus of hypothalamus" EXACT [] synonym: "supraoptic nucleus of hypothalamus" EXACT [] xref: BTO:0002697 xref: EFO:0002476 xref: FMA:62317 xref: GAID:646 xref: MA:0000849 xref: NIF_GrossAnatomy:birnlex_1411 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus [Term] id: UBERON:0001930 name: paraventricular nucleus of hypothalamus alt_id: UBERON:FMA_62320-MA_0000848 def: "." [Wikipedia:Paraventricular_nucleus_of_hypothalamus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Filiform nucleus" EXACT [] synonym: "filiform nucleus" EXACT [] synonym: "Paraventricular hypothalamic nucleus" EXACT [] synonym: "paraventricular hypothalamic nucleus" EXACT [] synonym: "Paraventricular nucleus" EXACT [] synonym: "paraventricular nucleus" EXACT [] synonym: "Paraventricular nucleus of hypothalamus" EXACT [] xref: BTO:0002476 xref: EFO:0002469 xref: FMA:62320 xref: GAID:643 xref: MA:0000848 xref: NIF_GrossAnatomy:birnlex_1407 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus [Term] id: UBERON:0001931 name: lateral preoptic nucleus alt_id: UBERON:FMA_62326-MA_0000835 def: "." [Wikipedia:Lateral_preoptic_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lateral preoptic area" EXACT [] synonym: "lateral preoptic area" EXACT [] synonym: "Lateral preoptic hypothalamic nucleus" EXACT [] synonym: "lateral preoptic hypothalamic nucleus" EXACT [] synonym: "Lateral preoptic nucleus" EXACT [] xref: FMA:62326 xref: MA:0000835 xref: NIF_GrossAnatomy:birnlex_1722 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus [Term] id: UBERON:0001932 name: arcuate nucleus of hypothalamus alt_id: UBERON:FMA_62329-MA_0000847 def: "." [Wikipedia:Arcuate_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Arcuate hypothalamic nucleus" EXACT [] synonym: "arcuate hypothalamic nucleus" EXACT [] synonym: "Arcuate nucleus" EXACT [] synonym: "arcuate nucleus" EXACT [] synonym: "Arcuate nucleus of hypothalamus" EXACT [] synonym: "Arcuate nucleus-2" EXACT [] synonym: "arcuate nucleus-2" EXACT [] synonym: "Arcuate periventricular nucleus" EXACT [] synonym: "arcuate periventricular nucleus" EXACT [] synonym: "Infundibular hypothalamic nucleus" EXACT [] synonym: "infundibular hypothalamic nucleus" EXACT [] synonym: "Infundibular nucleus" EXACT [] synonym: "infundibular nucleus" EXACT [] synonym: "Infundibular periventricular nucleus" EXACT [] synonym: "infundibular periventricular nucleus" EXACT [] xref: BTO:0002473 xref: FMA:62329 xref: GAID:647 xref: MA:0000847 xref: ncithesaurus:Arcuate_Nucleus xref: NIF_GrossAnatomy:birnlex_1638 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus relationship: part_of UBERON:0002271 ! periventricular zone of hypothalamus [Term] id: UBERON:0001933 name: retrochiasmatic area alt_id: UBERON:FMA_62330-MA_0000841 comment: This class was created automatically from a combination of ontologies synonym: "Retrochiasmatic area" EXACT [] synonym: "Retrochiasmatic region" EXACT [] synonym: "retrochiasmatic region" EXACT [] xref: FMA:62330 xref: MA:0000841 xref: NIF_GrossAnatomy:birnlex_1569 is_a: UBERON:0000064 ! organ part is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus relationship: part_of UBERON:0002272 ! medial zone of hypothalamus [Term] id: UBERON:0001934 name: dorsomedial nucleus of hypothalamus alt_id: UBERON:FMA_62331-MA_0000838 def: "." [Wikipedia:Dorsomedial_hypothalamic_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Dorsomedial hypothalamic nucleus" EXACT [] synonym: "dorsomedial hypothalamic nucleus" EXACT [] synonym: "Dorsomedial nucleus of dorsal hypothalamus" EXACT [] synonym: "dorsomedial nucleus of dorsal hypothalamus" EXACT [] synonym: "Dorsomedial nucleus of hypothalamus" EXACT [] synonym: "Dorsomedial nucleus of intermediate hypothalamus" EXACT [] synonym: "dorsomedial nucleus of intermediate hypothalamus" EXACT [] xref: BTO:0002474 xref: FMA:62331 xref: GAID:648 xref: MA:0000838 xref: NIF_GrossAnatomy:birnlex_1558 is_a: UBERON:0002739 ! implied link automatically realized ! medial dorsal nucleus is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus intersection_of: UBERON:0002739 ! medial dorsal nucleus intersection_of: part_of UBERON:0001898 ! hypothalamus relationship: part_of UBERON:0002272 ! medial zone of hypothalamus [Term] id: UBERON:0001935 name: ventromedial nucleus of hypothalamus alt_id: UBERON:FMA_62332-MA_0000845 def: "." [Wikipedia:Ventromedial_hypothalamic_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ventromedial hypothalamic nucleus" EXACT [] synonym: "ventromedial hypothalamic nucleus" EXACT [] synonym: "Ventromedial nucleus of hypothalamus" EXACT [] xref: BTO:0002472 xref: FMA:62332 xref: GAID:650 xref: MA:0000845 xref: NIF_GrossAnatomy:birnlex_1572 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001936 name: tuberomammillary nucleus alt_id: UBERON:FMA_62335-MA_0000853 def: "." [Wikipedia:Tuberomammillary_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Caudal magnocellular nucleus" EXACT [] synonym: "caudal magnocellular nucleus" EXACT [] synonym: "Mammilloinfundibular nucleus" EXACT [] synonym: "mammilloinfundibular nucleus" EXACT [] synonym: "Tuberomammillary hypothalamic nucleus" EXACT [] synonym: "tuberomammillary hypothalamic nucleus" EXACT [] synonym: "Tuberomammillary nucleus" EXACT [] xref: FMA:62335 xref: MA:0000853 xref: NIF_GrossAnatomy:birnlex_1271 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0002206 ! mammillary body [Term] id: UBERON:0001937 name: lateral hypothalamic nucleus alt_id: UBERON:FMA_62337-ZFA_0000227 def: "." [Wikipedia:Lateral_hypothalamic_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lateral hypothalamic nucleus" EXACT [] xref: FMA:62337 xref: NIF_GrossAnatomy:birnlex_1199 xref: TAO:0000227 xref: ZFA:0000227 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0001938 name: lateral mammillary nucleus alt_id: UBERON:FMA_62341-MA_0000850 comment: This class was created automatically from a combination of ontologies synonym: "Lateral mammillary hypothalamic nucleus" EXACT [] synonym: "lateral mammillary hypothalamic nucleus" EXACT [] synonym: "Lateral mammillary nucleus" EXACT [] synonym: "Lateral nucleus of mammillary body" EXACT [] synonym: "lateral nucleus of mammillary body" EXACT [] xref: FMA:62341 xref: MA:0000850 xref: NIF_GrossAnatomy:birnlex_1460 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0002206 ! mammillary body [Term] id: UBERON:0001939 name: medial mammillary nucleus alt_id: UBERON:FMA_62342-MA_0000851 comment: This class was created automatically from a combination of ontologies synonym: "Internal mammillary nucleus" EXACT [] synonym: "internal mammillary nucleus" EXACT [] synonym: "Medial mammillary nucleus" EXACT [] synonym: "Medial nucleus of mammillary body" EXACT [] synonym: "medial nucleus of mammillary body" EXACT [] xref: FMA:62342 xref: MA:0000851 xref: NIF_GrossAnatomy:birnlex_1299 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0002206 ! mammillary body [Term] id: UBERON:0001940 name: supramammillary nucleus alt_id: UBERON:FMA_62347-MA_0000852 comment: This class was created automatically from a combination of ontologies synonym: "Supramammillary nucleus" EXACT [] xref: FMA:62347 xref: MA:0000852 xref: NIF_GrossAnatomy:birnlex_1479 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0002206 ! mammillary body [Term] id: UBERON:0001941 name: lateral habenular nucleus alt_id: UBERON:FMA_62372-MA_0000831 comment: This class was created automatically from a combination of ontologies synonym: "Lateral habenula" EXACT [] synonym: "lateral habenula" EXACT [] synonym: "Lateral habenular nucleus" EXACT [] xref: BTO:0002699 xref: FMA:62372 xref: MA:0000831 xref: NIF_GrossAnatomy:birnlex_1438 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus relationship: part_of UBERON:0001904 ! habenula [Term] id: UBERON:0001942 name: medial habenular nucleus alt_id: UBERON:FMA_62373-MA_0000832 comment: This class was created automatically from a combination of ontologies synonym: "Medial habenula" EXACT [] synonym: "medial habenula" EXACT [] synonym: "Medial habenular nucleus" EXACT [] xref: BTO:0003686 xref: FMA:62373 xref: MA:0000832 xref: NIF_GrossAnatomy:birnlex_1431 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002757 ! implied link automatically realized ! regional part of epithalamus relationship: part_of UBERON:0001904 ! habenula [Term] id: UBERON:0001943 name: midbrain tegmentum alt_id: UBERON:FMA_62393-MA_0000212-ZFA_0001354 def: "Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle." [Wikipedia:Midbrain_tegmentum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Mesencephalic tegmentum" EXACT [] synonym: "mesencephalic tegmentum" EXACT [] synonym: "Midbrain tegmentum" EXACT [] synonym: "tegmentum" EXACT [] synonym: "Tegmentum of midbrain" EXACT [] synonym: "tegmentum of midbrain" EXACT [] xref: BTO:0003388 xref: EFO:0000921 xref: FMA:62393 xref: HOG:0001367 xref: MA:0000212 xref: MAT:0000452 xref: NIF_GrossAnatomy:birnlex_1031 xref: NIF_GrossAnatomy:birnlex_1200 xref: TAO:0001354 xref: ZFA:0000160 xref: ZFA:0001354 is_a: UBERON:0002950 ! regional part of midbrain relationship: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0001944 name: pretectal region alt_id: UBERON:FMA_62402-MA_0001062-ZFA_0000418 def: "." [Wikipedia:Pretectum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pretectal area" EXACT [] synonym: "pretectal area" EXACT [] synonym: "Pretectal nuclei" EXACT [] synonym: "pretectal nuclei" EXACT [] synonym: "Pretectal region" EXACT [] synonym: "Pretectum" EXACT [] synonym: "pretectum" EXACT [] xref: FMA:62402 xref: MA:0001062 xref: NIF_GrossAnatomy:birnlex_703 xref: TAO:0000418 xref: ZFA:0000418 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain relationship: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0001945 name: superior colliculus alt_id: UBERON:FMA_62403-MA_0001068-ZFA_0000445 def: "The roof of the midbrain, morphologically visible by the end of the segmentation period. Kimmel et al, 1995." [Wikipedia:Superior_colliculus, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anterior colliculus" EXACT [] synonym: "anterior colliculus" EXACT [] synonym: "Anterior corpus quadrigeminum" EXACT [] synonym: "anterior corpus quadrigeminum" EXACT [] synonym: "Cranial colliculus" EXACT [] synonym: "cranial colliculus" EXACT [] synonym: "dorsal midbrain" RELATED [] synonym: "Optic tectum" EXACT [] synonym: "optic tectum" EXACT [] synonym: "Superior colliculus" EXACT [] synonym: "tectal lobe" RELATED [] synonym: "tectum" RELATED [] synonym: "tectum opticum" RELATED [] xref: EFO:0002474 xref: FMA:62403 xref: GAID:576 xref: MA:0001068 xref: NIF_GrossAnatomy:birnlex_1040 xref: TAO:0000445 xref: ZFA:0000445 is_a: UBERON:0002966 ! regional part of midbrain tectum relationship: part_of UBERON:0002259 ! tectal plate [Term] id: UBERON:0001946 name: inferior colliculus alt_id: UBERON:FMA_62404-MA_0001067 def: "." [Wikipedia:Inferior_colliculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Caudal colliculus" EXACT [] synonym: "caudal colliculus" EXACT [] synonym: "Inferior colliculus" EXACT [] synonym: "Posterior colliculus" EXACT [] synonym: "posterior colliculus" EXACT [] synonym: "Posterior corpus quadrigeminum" EXACT [] synonym: "posterior corpus quadrigeminum" EXACT [] xref: EFO:0002465 xref: FMA:62404 xref: GAID:575 xref: MA:0001067 xref: NIF_GrossAnatomy:birnlex_806 is_a: UBERON:0002966 ! regional part of midbrain tectum relationship: part_of UBERON:0002259 ! tectal plate [Term] id: UBERON:0001947 name: red nucleus alt_id: UBERON:FMA_62407-MA_0001063 def: "." [Wikipedia:Red_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Red nucleus" EXACT [] xref: FMA:62407 xref: GAID:586 xref: MA:0001063 xref: NIF_GrossAnatomy:birnlex_1478 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0001948 name: regional part of spinal cord alt_id: UBERON:FMA_62420-ZFA_0001332 def: "." [Wikipedia:Spinal_cord_segment] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Segment of spinal cord" EXACT [] synonym: "Spinal cord segment" EXACT [] synonym: "spinal cord segment" RELATED [] synonym: "spinal neuromere" EXACT [] synonym: "spinal neuromeres" RELATED [] xref: FMA:62420 xref: TAO:0001332 xref: ZFA:0001332 is_a: UBERON:0000073 ! regional part of nervous system [Term] id: UBERON:0001949 name: gingival epithelium alt_id: UBERON:FMA_62423-MA_0001576 comment: This class was created automatically from a combination of ontologies synonym: "Epithelium of gingiva" EXACT [] synonym: "epithelium of gingiva" EXACT [] synonym: "Gingival epithelium" EXACT [] xref: FMA:62423 xref: MA:0001576 xref: ncithesaurus:Gingival_Epithelium is_a: UBERON:0000486 ! multilaminar epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001828 ! gingiva relationship: part_of UBERON:0001828 ! gingiva [Term] id: UBERON:0001950 name: neocortex alt_id: UBERON:FMA_62429-MA_0002754 def: "." [Wikipedia:Neocortex] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cerebral cortex" RELATED [] synonym: "Cerebral neocortex" EXACT [] synonym: "cerebral neocortex" EXACT [] synonym: "Homogenetic cortex" EXACT [] synonym: "homogenetic cortex" EXACT [] synonym: "Isocortex (sensu lato)" EXACT [] synonym: "isocortex (sensu lato)" EXACT [] synonym: "Neocortex" EXACT [] synonym: "Neopallial cortex" EXACT [] synonym: "neopallial cortex" EXACT [] synonym: "Neopallium" EXACT [] synonym: "neopallium" EXACT [] xref: BTO:0000920 xref: FMA:62429 xref: GAID:677 xref: MA:0002754 xref: NIF_GrossAnatomy:birnlex_2547 is_a: UBERON:0002619 ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0001951 name: epithelium of nasopharynx alt_id: UBERON:0003237 alt_id: UBERON:FMA_62452-MA_0001865 comment: This class was created automatically from a combination of ontologies synonym: "Epithelium of nasopharynx" EXACT [] synonym: "Nasopharynx epithelium" EXACT [] synonym: "nasopharynx epithelium" EXACT [] xref: EHDAA:7090 xref: FMA:62452 xref: HOG:0001038 xref: MA:0001865 xref: ncithesaurus:Nasopharynx_Epithelium is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003351 ! implied link automatically realized ! epithelium of pharynx intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001728 ! nasopharynx relationship: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0001952 name: epithelium of oropharynx alt_id: UBERON:FMA_62453-MA_0001605 comment: This class was created automatically from a combination of ontologies synonym: "Epithelium of oropharynx" EXACT [] synonym: "Oropharynx epithelium" EXACT [] synonym: "oropharynx epithelium" EXACT [] xref: FMA:62453 xref: MA:0001605 xref: ncithesaurus:Oropharynx_Epithelium is_a: UBERON:0000486 ! multilaminar epithelium is_a: UBERON:0003351 ! implied link automatically realized ! epithelium of pharynx intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001729 ! oropharynx relationship: part_of UBERON:0001729 ! oropharynx [Term] id: UBERON:0001953 name: presubiculum alt_id: UBERON:FMA_62486-MA_0000923 comment: This class was created automatically from a combination of ontologies synonym: "Area 27 of Brodmann" EXACT [] synonym: "area 27 of brodmann" EXACT [] synonym: "Presubiculum" EXACT [] xref: FMA:62486 xref: MA:0000923 xref: NIF_GrossAnatomy:birnlex_1108 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0001954 name: hippocampus alt_id: UBERON:FMA_62493-MA_0000191-MIAA_0000114 def: "The hippocampus is a major component of the brains of humans and other mammals. It belongs to the limbic system and plays major roles in long term memory and spatial navigation. Like the cerebral cortex, it is a paired structure, with mirror-image halves in the left and right sides of the brain. The hippocampus is closely associated with the cerebral cortex, and in primates is located in the medial temporal lobe, underneath the cortical surface. It is shaped like a curved tube, which in humans is convoluted in a way that reminded early anatomists of a seahorse." [Wikipedia:Hippocampus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ammon's horn" EXACT [] synonym: "ammon's horn" RELATED [] synonym: "Hippocampus" EXACT [] synonym: "Hippocampus major" EXACT [] synonym: "hippocampus major" EXACT [] synonym: "Hippocampus proper" EXACT [] synonym: "hippocampus proper" EXACT [] xref: BTO:0000601 xref: EFO:0000530 xref: FMA:62493 xref: GAID:623 xref: HOG:0001177 xref: MA:0000191 xref: MAT:0000114 xref: MIAA:0000114 xref: ncithesaurus:Hippocampus xref: NIF_GrossAnatomy:birnlex_721 xref: NIF_GrossAnatomy:birnlex_726 xref: OpenCyc:Mx4rv3piFJwpEbGdrcN5Y29ycA is_a: UBERON:0000064 ! organ part is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0001955 name: epithelium of respiratory bronchiole alt_id: UBERON:FMA_62498-MA_0001773 comment: This class was created automatically from a combination of ontologies synonym: "Epithelium of respiratory bronchiole" EXACT [] synonym: "Respiratory bronchiole epithelium" EXACT [] synonym: "respiratory bronchiole epithelium" EXACT [] xref: FMA:62498 xref: MA:0001773 xref: ncithesaurus:Respiratory_Bronchiole_Epithelium is_a: UBERON:0002051 ! epithelium of bronchiole intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002188 ! respiratory bronchiole relationship: part_of UBERON:0002188 ! respiratory bronchiole [Term] id: UBERON:0001956 name: cartilage of bronchus alt_id: UBERON:FMA_62649-MA_0001835 comment: This class was created automatically from a combination of ontologies synonym: "Bronchial cartilage" EXACT [] synonym: "bronchial cartilage" EXACT [] synonym: "bronchus cartilage" EXACT [] synonym: "Cartilage of bronchus" EXACT [] xref: FMA:62649 xref: MA:0001835 xref: ncithesaurus:Bronchus_Cartilage is_a: UBERON:0002418 ! cartilage is_a: UBERON:0003603 ! implied link automatically realized ! lower respiratory tract cartilage intersection_of: UBERON:0002418 ! cartilage intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0001957 name: submucosa of bronchus alt_id: UBERON:FMA_62653-MA_0001837 comment: This class was created automatically from a combination of ontologies synonym: "Bronchial submucosa" EXACT [] synonym: "bronchial submucosa" EXACT [] synonym: "bronchus submucosa" EXACT [] synonym: "Submucosa of bronchus" EXACT [] xref: FMA:62653 xref: MA:0001837 xref: ncithesaurus:Bronchus_Submucosa is_a: UBERON:0000009 ! submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0001958 name: epithelium of terminal bronchiole alt_id: UBERON:FMA_62794-MA_0001774 comment: This class was created automatically from a combination of ontologies synonym: "Epithelium of terminal bronchiole" EXACT [] synonym: "Terminal bronchiole epithelium" EXACT [] synonym: "terminal bronchiole epithelium" EXACT [] xref: FMA:62794 xref: MA:0001774 xref: ncithesaurus:Terminal_Bronchiole_Epithelium is_a: UBERON:0002051 ! epithelium of bronchiole intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002187 ! terminal bronchiole relationship: part_of UBERON:0002187 ! terminal bronchiole [Term] id: UBERON:0001959 name: white pulp of spleen alt_id: UBERON:FMA_62805-MA_0000762 def: "The white pulp contains T cells, B cells and accessory cells. The function of the white pulp is to mount an immunological response to antigens within the blood. The white pulp is present in the form of a periarteriolar lymphoid sheath. This sheath contains B cell follicles and T cells. At the edge of the T zone is a region known as the marginal zone where larger lymphocytes and antigen presenting dendritic cells are located." [Wikipedia:White_pulp] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "spleen white pulp" EXACT [] synonym: "White pulp" EXACT [] synonym: "white pulp" EXACT [] synonym: "White pulp of spleen" EXACT [] xref: FMA:62805 xref: MA:0000762 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0001960 name: periarterial lymphatic sheath alt_id: UBERON:FMA_62810-MA_0000765 comment: This class was created automatically from a combination of ontologies synonym: "PALS" EXACT [] synonym: "pals" EXACT [] synonym: "Periarterial lymphatic sheath" EXACT [] synonym: "Periarterial lymphoid sheath" EXACT [] synonym: "periarterial lymphoid sheath" EXACT [] synonym: "spleen periarteriolar lymphatic sheath" EXACT [] xref: FMA:62810 xref: MA:0000765 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001959 ! white pulp of spleen [Term] id: UBERON:0001961 name: mucosa-associated lymphoid tissue alt_id: UBERON:FMA_62819-MA_0000140 def: "diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [Wikipedia:Mucosa-associated_lymphoid_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Epithelio-lymphoid tissue" EXACT [] synonym: "epithelio-lymphoid tissue" EXACT [] synonym: "MALT" EXACT [] synonym: "malt" EXACT [] synonym: "mucosa associated lymphatic tissue" EXACT [] synonym: "mucosa associated lymphoid tissue" EXACT [] synonym: "Mucosa-associated lymphoid tissue" EXACT [] xref: FMA:62819 xref: MA:0000140 xref: ncithesaurus:Mucosa-Associated_Lymphoid_Tissue is_a: UBERON:0001744 ! lymphoid tissue relationship: part_of UBERON:0001744 ! lymphoid tissue [Term] id: UBERON:0001962 name: gut-associated lymphoid tissue alt_id: UBERON:FMA_62820-MA_0000136 def: "Mucosa-associated lymphoid tissue in digestive tract. includes Peyer's patches, appendix, and solitary lymph nodules[GO]." [Wikipedia:Gut-associated_lymphoid_tissue] subset: uberon_slim synonym: "GALT" RELATED [] synonym: "gut associated lymphoid tissue" EXACT [] synonym: "Gut-associated lymphoid tissue" EXACT [] xref: FMA:62820 xref: MA:0000136 xref: ncithesaurus:Gut_Associated_Lymphoid_Tissue is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue [Term] id: UBERON:0001963 name: bronchial-associated lymphoid tissue alt_id: UBERON:FMA_62821-MA_0000135 comment: This class was created automatically from a combination of ontologies synonym: "BALT" RELATED [] synonym: "Bronchial-associated lymphoid tissue" EXACT [] synonym: "bronchus associated lymphoid tissue" EXACT [] xref: FMA:62821 xref: MA:0000135 xref: ncithesaurus:Bronchus-Associated_Lymphoid_Tissue is_a: UBERON:0001961 ! mucosa-associated lymphoid tissue [Term] id: UBERON:0001964 name: least splanchnic nerve alt_id: UBERON:FMA_6283-MA_0002635 def: "." [Wikipedia:Least_splanchnic_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Least splanchnic nerve" EXACT [] synonym: "Least thoracic splanchnic nerve" EXACT [] synonym: "least thoracic splanchnic nerve" EXACT [] synonym: "Lowest splanchnic nerve" EXACT [] synonym: "lowest splanchnic nerve" EXACT [] synonym: "Renal branch of lesser splanchnic nerve" EXACT [] synonym: "renal branch of lesser splanchnic nerve" EXACT [] synonym: "Renal nerve" EXACT [] synonym: "renal nerve" EXACT [] xref: FMA:6283 xref: MA:0002635 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0001965 name: substantia nigra pars compacta alt_id: UBERON:FMA_62907-MA_0001064 def: "Regional part of substantia nigra consisting of a densely packed region of cells, more or less dorsal to the pars reticulata, but extending into the pars reticulata in some species. The dominant neurotransmitter used by pars compacta neurons is dopamine. Pars compacta neurons are pigmented in many species (MM)[NIF]." [NIF_GrossAnatomy:birnlex_990, Wikipedia:Substantia_nigra_pars_compacta] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Compact part of substantia nigra" EXACT [] synonym: "compact part of substantia nigra" EXACT [] synonym: "Pars compacta" EXACT [] synonym: "pars compacta" EXACT [] synonym: "SNpc" EXACT [] synonym: "Substantia nigra pars compacta" EXACT [] synonym: "Substantia nigra, compact part" EXACT [] synonym: "substantia nigra, compact part" EXACT [] xref: BTO:0003749 xref: FMA:62907 xref: MA:0001064 xref: NIF_GrossAnatomy:birnlex_990 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain relationship: part_of UBERON:0002038 ! substantia nigra [Term] id: UBERON:0001966 name: substantia nigra pars reticulata alt_id: UBERON:FMA_62908-MA_0001066 def: "Regional part of substantia nigra consisting of loosely packed cells, generally located ventral and lateral to the pars compacta. Many cells in this region use GABA as a neurotransmitter (MM)[NLex]." [Neurolex:Substantia_nigra_pars_reticulata, Wikipedia:Pars_reticulata] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pars reticulata" EXACT [] synonym: "pars reticulata" EXACT [] synonym: "Reticular part of substantia nigra" EXACT [] synonym: "reticular part of substantia nigra" EXACT [] synonym: "Substantia nigra pars reticulata" EXACT [] synonym: "Substantia nigra, reticular part" EXACT [] synonym: "substantia nigra, reticular part" EXACT [] xref: BTO:0003750 xref: FMA:62908 xref: MA:0001066 xref: NIF_GrossAnatomy:birnlex_968 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain relationship: part_of UBERON:0002038 ! substantia nigra [Term] id: UBERON:0001967 name: reticular lamina alt_id: UBERON:FMA_62924-MA_0001194 def: "." [Wikipedia:Reticular_lamina] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Fibroreticular lamina" EXACT [] synonym: "fibroreticular lamina" EXACT [] synonym: "Lamina fibroreticularis" EXACT [] synonym: "lamina fibroreticularis" EXACT [] synonym: "Reticular lamina" EXACT [] synonym: "reticular membrane" RELATED [] xref: FMA:62924 xref: MA:0001194 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0002227 ! spiral organ of cochlea [Term] id: UBERON:0001968 name: semen alt_id: UBERON:FMA_62966-MA_0002522 alt_id: UBERON:FMA_62967-MA_0002523-MIAA_0000057 alt_id: UBERON:FMA_62969-MA_0002526 def: "Body substance which consists of spermatozoa and seminal plasma. // Secretion produced prostatic glands, bulbourethral glands or the seminal vesicles." [Wikipedia:Semen] comment: TODO: check semen vs seminal fluid subset: uberon_slim synonym: "Secretion of seminal vesicle" EXACT [] synonym: "secretion of seminal vesicle" EXACT [] synonym: "Semen" EXACT [] synonym: "semen" BROAD [] synonym: "Seminal fluid" EXACT [] synonym: "seminal fluid" EXACT [] synonym: "Seminal vesicle secretion" EXACT [] synonym: "seminal vesicle secretion" EXACT [] xref: BTO:0001230 xref: FMA:62966 xref: FMA:62967 xref: FMA:62969 xref: GAID:1169 xref: MA:0002522 xref: MA:0002523 xref: MA:0002526 xref: MAT:0000057 xref: MIAA:0000057 xref: ncithesaurus:Semen xref: OpenCyc:Mx4rvgC-zpwpEbGdrcN5Y29ycA is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001969 name: blood plasma alt_id: UBERON:FMA_62970-MA_0002501-MIAA_0000052 def: "Body substance in liquid state contained in the lumen of arterial and venous trees, blood capillary and the cardiac chambers; constitutes the liquid phase of blood." [Wikipedia:Blood_plasma] subset: uberon_slim synonym: "plasma" EXACT [] synonym: "portion of blood plasma" EXACT [] synonym: "portion of plasma" EXACT [] xref: BTO:0000131 xref: EFO:0001905 xref: FMA:62970 xref: GAID:1178 xref: MA:0002501 xref: MAT:0000052 xref: MIAA:0000052 xref: ncithesaurus:Plasma xref: OpenCyc:Mx4rEg4ZYrIbEduAAAAOpmP6tw is_a: UBERON:0000179 ! implied link automatically realized ! haemolymphatic fluid is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0000178 ! blood [Term] id: UBERON:0001970 name: bile alt_id: UBERON:FMA_62971-MA_0002513 def: "." [Wikipedia:Bile] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bile" EXACT [] xref: BTO:0000121 xref: ENVO:02000023 xref: FMA:62971 xref: GAID:1157 xref: galen:Bile xref: MA:0002513 xref: ncithesaurus:Bile is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001971 name: gastric juice alt_id: UBERON:FMA_62972-MA_0002519 def: "." [Wikipedia:Gastric_juice] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Gastric juice" EXACT [] synonym: "stomach secretion" EXACT [] xref: BTO:0000501 xref: FMA:62972 xref: GAID:1160 xref: galen:GastricJuice xref: MA:0002519 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001972 name: submucosa of esophagus alt_id: UBERON:FMA_62997-MA_0002724 synonym: "esophageal submucosa" EXACT [] synonym: "esophagus submucosa" EXACT [] synonym: "submucosa of esophagus" EXACT [] xref: FMA:62997 xref: MA:0002724 is_a: UBERON:0000009 ! submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001043 ! esophagus relationship: part_of UBERON:0001096 ! wall of esophagus [Term] id: UBERON:0001973 name: substance of tooth alt_id: UBERON:FMA_63001-MA_0002540 def: "Body substance in solid state produced by odontoblasts, amyloblasts or cementoblasts." [] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Substance of tooth" EXACT [] synonym: "Tooth substance" EXACT [] synonym: "tooth substance" EXACT [] xref: FMA:63001 xref: MA:0002540 is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0001974 name: lamina propria of esophagus alt_id: UBERON:FMA_63050-MA_0001568 comment: This class was created automatically from a combination of ontologies synonym: "esophagus lamina propria" EXACT [] synonym: "Lamina propria mucosae of esophagus" EXACT [] synonym: "lamina propria mucosae of esophagus" EXACT [] synonym: "Lamina propria of esophagus" EXACT [] synonym: "oesophagus lamina propria" RELATED [] xref: FMA:63050 xref: MA:0001568 is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue is_a: UBERON:0003593 ! implied link automatically realized ! thoracic cavity connective tissue intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0001975 name: serosa of esophagus alt_id: UBERON:FMA_63057-MA_0001571 comment: This class was created automatically from a combination of ontologies synonym: "Esophagus serosa" EXACT [] synonym: "esophagus serosa" EXACT [] synonym: "oesophagus serosa" RELATED [] synonym: "Serosa of abdominal part of esophagus" EXACT [] synonym: "serosa of abdominal part of esophagus" EXACT [] synonym: "Serosa of esophagus" EXACT [] synonym: "Serosa of oesophagus" EXACT [] synonym: "serosa of oesophagus" EXACT [] synonym: "Serous coat of oesophagus" EXACT [] synonym: "serous coat of oesophagus" EXACT [] xref: FMA:63057 xref: MA:0001571 is_a: UBERON:0000042 ! serous membrane intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0001043 ! esophagus relationship: part_of UBERON:0001096 ! wall of esophagus [Term] id: UBERON:0001976 name: epithelium of esophagus alt_id: UBERON:FMA_63063-MA_0001565-ZFA_0001499 def: "Simple columnar epithelium that lines the esophagus. Chen et al, 2007." [ZFIN:curator] comment: Different kinds of epithelium in ZFA and FMA - DV with CARO subset: uberon_slim synonym: "Epithelium of esophagus" EXACT [] synonym: "Esophageal epithelium" EXACT [] synonym: "esophageal epithelium" EXACT [] synonym: "Esophagus epithelium" EXACT [] synonym: "esophagus epithelium" EXACT [] synonym: "oesophagus epithelium" RELATED [] xref: BTO:0001578 xref: FMA:63063 xref: MA:0001565 xref: ncithesaurus:Esophageal_Epithelium xref: TAO:0001499 xref: ZFA:0001499 is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0000486 ! multilaminar epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001043 ! esophagus relationship: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0001977 name: serum alt_id: UBERON:FMA_63083-MA_0002502 def: "Body substance derived from plasma by the elimination of fibrinogen." [Wikipedia:Serum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Blood serum" EXACT [] synonym: "blood serum" EXACT [] synonym: "Serum" EXACT [] xref: BTO:0000133 xref: BTO:0001239 xref: FMA:63083 xref: MA:0002502 xref: ncithesaurus:Serum is_a: UBERON:0000179 ! implied link automatically realized ! haemolymphatic fluid is_a: UBERON:0000463 ! portion of organism substance relationship: part_of UBERON:0001969 ! blood plasma [Term] id: UBERON:0001978 name: parenchyma of pancreas alt_id: UBERON:FMA_63120-MA_0000724 comment: This class was created automatically from a combination of ontologies synonym: "pancreas parenchyma" EXACT [] synonym: "Pancreatic parenchyma" EXACT [] synonym: "pancreatic parenchyma" EXACT [] synonym: "Parenchyma of pancreas" EXACT [] xref: FMA:63120 xref: HOG:0001430 xref: MA:0000724 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0001979 name: venule alt_id: UBERON:FMA_63130-MA_0000071 def: "Subdivision of venous tree (organ) which is directly continuous with the capillary vessel." [Wikipedia:Venule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Venule" EXACT [] xref: BTO:0002626 xref: FMA:63130 xref: MA:0000071 xref: ncithesaurus:Venule xref: ZFA:0005315 is_a: UBERON:0003920 ! venous blood vessel relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0001980 name: arteriole alt_id: UBERON:FMA_63182-MA_0000063 def: "Subdivision of arterial tree (organ) which is directly continuous with capillary vessel." [Wikipedia:Arteriole] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Arteriole" EXACT [] xref: BTO:0001997 xref: FMA:63182 xref: MA:0000063 xref: ncithesaurus:Arteriole xref: ZFA:0005255 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0001981 name: blood vessel alt_id: UBERON:FMA_63183-XAO_0001011 def: "A vessel through which blood circulates in the body." [BTO:0001102, Wikipedia:Blood_vessel] comment: note that FMA:63183 Blood vessel is categorized as 'general anatomical term'. Suggestion to map to region of vascular tree from Terry H at JAX subset: uberon_slim synonym: "Blood vessel" EXACT [] xref: BTO:0001102 xref: EFO:0000817 xref: EHDAA:240 xref: FMA:50722 xref: FMA:63183 xref: GAID:169 xref: HOG:0001250 xref: MA:0000060 xref: MAT:0000393 xref: ncithesaurus:Blood_Vessel xref: OpenCyc:Mx4rvVjxlpwpEbGdrcN5Y29ycA xref: XAO:0001011 xref: ZFA:0005314 is_a: UBERON:0000055 ! vessel disjoint_from: UBERON:0001473 ! lymphatic vessel relationship: has_part UBERON:0000178 ! blood relationship: part_of UBERON:0001009 ! circulatory system relationship: part_of UBERON:0002049 ! vasculature [Term] id: UBERON:0001982 name: capillary alt_id: UBERON:FMA_63194-MA_0000065-XAO_0000116 def: "Subdivision of vascular tree (organ) which connects an arteriole to a venule or vice-versa. // Any of the smallest blood vessels connecting arterioles with venules." [NLM:capillary, Wikipedia:Capillary] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Blood capillary" EXACT [] synonym: "blood capillary" EXACT [] synonym: "Capillary" EXACT [] synonym: "Capillary vessel" EXACT [] synonym: "capillary vessel" EXACT [] xref: BTO:0002045 xref: EFO:0001906 xref: FMA:63194 xref: HOG:0001253 xref: MA:0000065 xref: ncithesaurus:Capillary xref: OpenCyc:Mx4rvWEU-5wpEbGdrcN5Y29ycA xref: XAO:0000116 xref: ZFA:0005250 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0001983 name: crypt of lieberkuhn alt_id: UBERON:FMA_63621-MA_0001535 def: "A gland found in the epithelial lining of the small intestine and colon." [Wikipedia:Crypts_of_Lieberkuhn] comment: This class was created automatically from a combination of ontologies synonym: "Crypt of Lieberkuhn" EXACT [] synonym: "intestinal gland" EXACT [Wikipedia:Crypts_of_Lieberkuhn] synonym: "Lieberkuhn crypt" EXACT [] synonym: "lieberkuhn crypt" EXACT [] xref: FMA:63621 xref: MA:0001535 xref: ncithesaurus:Crypts_of_the_Lieberkuhn is_a: UBERON:0000333 ! implied link automatically realized ! intestinal gland is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0001242 ! intestinal mucosa [Term] id: UBERON:0001984 name: crypt of lieberkuhn of large intestine alt_id: UBERON:FMA_63622-MA_0001544 comment: This class was created automatically from a combination of ontologies synonym: "Crypt of Lieberkuhn of large intestine" EXACT [] synonym: "Large intestinal crypt of Lieberkuhn" EXACT [] synonym: "large intestinal crypt of lieberkuhn" EXACT [] synonym: "large intestine crypt of lieberkuhn" EXACT [] xref: FMA:63622 xref: MA:0001544 xref: ncithesaurus:Large_Intestinal_Crypt_of_the_Lieberkuhn is_a: UBERON:0001983 ! crypt of lieberkuhn intersection_of: UBERON:0001983 ! crypt of lieberkuhn intersection_of: part_of UBERON:0000059 ! large intestine relationship: part_of UBERON:0001207 ! mucosa of large intestine [Term] id: UBERON:0001985 name: corneal endothelium alt_id: UBERON:FMA_63882-MA_0001242 def: "A monolayer of specialized, flattened, mitochondria-rich cells that lines the posterior surface of the cornea and faces the anterior chamber of the eye[WP]." [Wikipedia:Corneal_endothelium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: FMA:63882 xref: GAID:891 xref: MA:0001242 xref: ncithesaurus:Corneal_Endothelium xref: ZFA:0001687 is_a: UBERON:0001772 ! implied link automatically realized ! corneal epithelium is_a: UBERON:0001986 ! endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0000964 ! cornea [Term] id: UBERON:0001986 name: endothelium alt_id: UBERON:FMA_63916-ZFA_0001639 def: "An endothelium is an epithelium that lines an anatomical structure[GO]. Endothelial cells are thin flattened cells which line the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium[GO]. Simple squamous epithelium which lines blood and lymphatic vessels and the heart[ZFA]." [GO:0001935, GO:0003158, Wikipedia:Endothelium, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Endothelium" EXACT [] xref: BTO:0000393 xref: EHDAA:1011 xref: EHDAA:1543 xref: EHDAA:1560 xref: EHDAA:1566 xref: EHDAA:1578 xref: EHDAA:2211 xref: EHDAA:2217 xref: EHDAA:2227 xref: EHDAA:3076 xref: EHDAA:3082 xref: EHDAA:3790 xref: EHDAA:4953 xref: EHDAA:4961 xref: EHDAA:4975 xref: EHDAA:4983 xref: EHDAA:4991 xref: FMA:63916 xref: GAID:520 xref: galen:Endothelium xref: ncithesaurus:Endothelium xref: ZFA:0001639 is_a: UBERON:0000487 ! simple squamous epithelium [Term] id: UBERON:0001987 name: placenta alt_id: UBERON:FMA_63934-MA_0000386-MIAA_0000279 def: "organ of metabolic interchange between fetus and mother, partly of embryonic origin and partly of maternal origin[GO]." [Wikipedia:Placenta] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Placenta" EXACT [] xref: BTO:0001078 xref: EFO:0001407 xref: FMA:63934 xref: GAID:379 xref: HOG:0001266 xref: MA:0000386 xref: MAT:0000279 xref: MIAA:0000279 xref: ncithesaurus:Placenta is_a: UBERON:0000478 ! extraembryonic structure relationship: part_of UBERON:0000990 ! reproductive system [Term] id: UBERON:0001988 name: feces alt_id: UBERON:FMA_64183-MA_0002509-MIAA_0000053 def: "Excretion in semisolid state processed by the intestine." [Wikipedia:Feces] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "faeces" EXACT [] synonym: "Fecal matter" EXACT [] synonym: "fecal matter" EXACT [] synonym: "Feces" EXACT [] synonym: "Stool" EXACT [] synonym: "stool" EXACT [] xref: BTO:0000440 xref: ENVO:00002003 xref: FMA:64183 xref: GAID:1199 xref: galen:Feces xref: MA:0002509 xref: MAT:0000053 xref: MIAA:0000053 xref: ncithesaurus:Feces xref: OpenCyc:Mx4rvVjJMZwpEbGdrcN5Y29ycA is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0001989 name: superior cervical ganglion alt_id: UBERON:FMA_6467-MA_0001156-ZFA_0001572 def: "Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain." [Wikipedia:Superior_cervical_ganglion, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Superior cervical ganglion" EXACT [] synonym: "Superior cervical sympathetic ganglion" EXACT [] synonym: "superior cervical sympathetic ganglion" EXACT [] synonym: "superior sympathetic cervical ganglion" RELATED [] xref: BTO:0001325 xref: EFO:0001945 xref: EHDAA:8943 xref: FMA:6467 xref: GAID:712 xref: MA:0001156 xref: TAO:0001572 xref: ZFA:0001572 is_a: UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0001990 name: middle cervical ganglion alt_id: UBERON:FMA_6468-MA_0001155 def: "." [Wikipedia:Middle_cervical_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Middle cervical ganglion" EXACT [] synonym: "Middle cervical sympathetic ganglion" EXACT [] synonym: "middle cervical sympathetic ganglion" EXACT [] xref: BTO:0000359 xref: EHDAA:8941 xref: FMA:6468 xref: MA:0001155 is_a: UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0001991 name: cervical ganglion alt_id: UBERON:FMA_6470-MA_0001153 def: "." [Wikipedia:Cervical_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cervical ganglion" EXACT [] synonym: "Cervical sympathetic ganglion" EXACT [] synonym: "cervical sympathetic ganglion" EXACT [] xref: BTO:0000113 xref: FMA:6470 xref: MA:0001153 is_a: UBERON:0001807 ! paravertebral ganglion intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0000002 ! cervix [Term] id: UBERON:0001992 name: papillary layer of dermis alt_id: UBERON:FMA_64776-MA_0000800 def: "Dense irregular connective tissue of the skin that consists of fibroblasts, various connective tissue cell types, and collagen, predominantly type III." [Wikipedia:Papillary_dermis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "dermis papillary layer" EXACT [] synonym: "Papillary dermis" EXACT [] synonym: "papillary dermis" EXACT [] synonym: "Papillary layer of dermis" EXACT [] xref: FMA:64776 xref: MA:0000800 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002067 ! dermis [Term] id: UBERON:0001993 name: reticular layer of dermis alt_id: UBERON:FMA_64778-MA_0000801 def: "Dense irregular connective tissue that consists of elastic fibers and collagen, predominantly type I." [Wikipedia:Reticular_dermis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "dermis reticular layer" EXACT [] synonym: "Reticular dermis" EXACT [] synonym: "reticular dermis" EXACT [] synonym: "Reticular layer of dermis" EXACT [] xref: FMA:64778 xref: MA:0000801 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002067 ! dermis [Term] id: UBERON:0001994 name: hyaline cartilage alt_id: UBERON:FMA_64783-MA_0000109 def: "Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel with a perichondrium." [Wikipedia:Hyaline_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hyaline cartilage" EXACT [] xref: FMA:64783 xref: MA:0000109 xref: ncithesaurus:Hyaline_Cartilage is_a: UBERON:0002418 ! cartilage [Term] id: UBERON:0001995 name: fibrocartilage alt_id: UBERON:FMA_64784-MA_0000108 def: "Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which is an amorphous gel without a well-defined perichondrium." [Wikipedia:Fibrocartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Fibrocartilage" EXACT [] xref: FMA:64784 xref: galen:Fibrocartilage xref: MA:0000108 xref: ncithesaurus:Fibrocartilage is_a: UBERON:0002418 ! cartilage [Term] id: UBERON:0001996 name: elastic cartilage alt_id: UBERON:FMA_64785-MA_0000107 def: "Cartilage (tissue) which consists of chondrocytes and collagen, the intercellular matrix of which consists of elastic fibers." [Wikipedia:Elastic_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Elastic cartilage" EXACT [] xref: FMA:64785 xref: MA:0000107 xref: ncithesaurus:Elastic_Cartilage is_a: UBERON:0002418 ! cartilage [Term] id: UBERON:0001997 name: olfactory epithelium alt_id: UBERON:FMA_64803-ZFA_0000554 def: "Nasal epithelium wherein ciliated olfactory receptor neurons, supporting cells, and basal cells are located." [Wikipedia:Olfactory_epithelium, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "nasal epithelium" RELATED [] synonym: "nasal sensory epithelium" RELATED [] synonym: "Olfactory epithelium" EXACT [] synonym: "Olfactory sensory epithelium" EXACT [] synonym: "olfactory sensory epithelium" EXACT [] synonym: "Sensory olfactory epithelium" EXACT [] synonym: "sensory olfactory epithelium" EXACT [] xref: BTO:0000108 xref: EFO:0001972 xref: FMA:64803 xref: HOG:0000985 xref: MAT:0000445 xref: ncithesaurus:Olfactory_Epithelium xref: NIF_GrossAnatomy:birnlex_2703 xref: TAO:0000554 xref: ZFA:0000554 is_a: UBERON:0000485 ! simple columnar epithelium is_a: UBERON:0003234 ! implied link automatically realized ! epithelium of nasal cavity is_a: UBERON:0003350 ! implied link automatically realized ! epithelium of mucosa relationship: part_of UBERON:0001826 ! mucosa of nose [Term] id: UBERON:0001998 name: sternocostal joint alt_id: UBERON:FMA_64877-MA_0001512 comment: This class was created automatically from a combination of ontologies synonym: "Sternochondral joint" EXACT [] synonym: "sternochondral joint" EXACT [] synonym: "Sternocostal joint" EXACT [] xref: FMA:64877 xref: FMA:71376 xref: FMA:7954 xref: GAID:271 xref: MA:0001512 xref: ncithesaurus:Sternocostal_Joint is_a: UBERON:0002001 ! joint of rib [Term] id: UBERON:0001999 name: iliopsoas alt_id: UBERON:FMA_64918-MA_0002321 def: "Anatomical cluster consisting of iliacus, psoas major, psoas minor[WP]." [Wikipedia:Iliopsoas] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hyrtl's muscle" EXACT [] synonym: "hyrtl's muscle" EXACT [] synonym: "Iliopsoas" EXACT [] xref: FMA:64918 xref: MA:0002321 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002000 name: gluteal muscle alt_id: UBERON:FMA_64922-MA_0000535 def: "." [Wikipedia:Gluteal_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Gluteal muscle" EXACT [] xref: BTO:0000531 xref: FMA:64922 xref: MA:0000535 is_a: UBERON:0001497 ! muscle of pelvic girdle [Term] id: UBERON:0002001 name: joint of rib alt_id: UBERON:FMA_64994-MA_0001508 comment: This class was created automatically from a combination of ontologies synonym: "Joint of rib" EXACT [] synonym: "Rib joint" EXACT [] synonym: "rib joint" EXACT [] xref: FMA:64994 xref: MA:0001508 xref: ncithesaurus:Joint_of_the_Rib is_a: UBERON:0000982 ! joint is_a: UBERON:0003657 ! implied link automatically realized ! limb joint intersection_of: UBERON:0000982 ! joint intersection_of: part_of UBERON:0002228 ! rib [Term] id: UBERON:0002002 name: interchondral joint alt_id: UBERON:FMA_64996-MA_0001511 comment: This class was created automatically from a combination of ontologies synonym: "Interchondral joint" EXACT [] xref: FMA:64996 xref: FMA:71378 xref: FMA:7955 xref: MA:0001511 is_a: UBERON:0002001 ! joint of rib [Term] id: UBERON:0002003 name: peripheral nerve alt_id: UBERON:FMA_65239-MA_0000228-XAO_0000204 def: "Neural tree (organ) which is directly continuous with the neuraxis. Examples: phrenic nerve, radial nerve, ilioinguinal nerve, sciatic nerve." [Wikipedia:Peripheral_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Peripheral nerve" EXACT [] synonym: "Peripheral nerve tree" EXACT [] synonym: "peripheral nerve tree" EXACT [] xref: BTO:0001027 xref: FMA:65239 xref: GAID:747 xref: HOG:0000901 xref: MA:0000228 xref: ncithesaurus:Peripheral_Nerve xref: XAO:0000204 is_a: UBERON:0001021 ! nerve [Term] id: UBERON:0002004 name: trunk of sciatic nerve alt_id: UBERON:FMA_65507-MA_0001178 comment: This class was created automatically from a combination of ontologies synonym: "sciatic nerve trunk" EXACT [] synonym: "Sciatic neural trunk" EXACT [] synonym: "sciatic neural trunk" EXACT [] synonym: "Trunk of sciatic nerve" EXACT [] xref: FMA:65507 xref: MA:0001178 is_a: UBERON:0001147 ! trunk of peripheral nerve [Term] id: UBERON:0002005 name: enteric nervous system alt_id: UBERON:FMA_66070-MA_0000222-MIAA_0000102-ZFA_0001155 def: "The enteric nervous system is composed of two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gall bladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation[GO]." [Wikipedia:Enteric_nervous_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Enteric nervous system" EXACT [] synonym: "PNS - enteric" EXACT [] synonym: "pns - enteric" EXACT [] xref: BTO:0002506 xref: EFO:0000895 xref: FMA:66070 xref: GAID:799 xref: MA:0000222 xref: MAT:0000102 xref: MIAA:0000102 xref: NIF_GrossAnatomy:birnlex_1166 xref: TAO:0001155 xref: ZFA:0001155 is_a: UBERON:0002410 ! autonomic nervous system [Term] id: UBERON:0002006 name: cortex of lymph node alt_id: UBERON:FMA_66253-MA_0000740 def: "Peripheral portion of the lymph node, underneath the capsule[WP]." [Wikipedia:Cortex_of_lymph_node] subset: uberon_slim synonym: "Cortex of lymph node" EXACT [] synonym: "Lymph node cortex" EXACT [] synonym: "lymph node cortex" EXACT [] xref: FMA:66253 xref: MA:0000740 xref: ncithesaurus:Lymph_Node_Cortex is_a: UBERON:0001851 ! cortex intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0000029 ! lymph node [Term] id: UBERON:0002007 name: medulla of lymph node alt_id: UBERON:FMA_66254-MA_0000745 def: "." [Wikipedia:Medulla_of_lymph_node] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lymph node medulla" EXACT [] synonym: "lymph node medulla" EXACT [] synonym: "Medulla of lymph node" EXACT [] xref: FMA:66254 xref: MA:0000745 is_a: UBERON:0000958 ! medulla intersection_of: UBERON:0000958 ! medulla intersection_of: part_of UBERON:0000029 ! lymph node relationship: part_of UBERON:0000029 ! lymph node [Term] id: UBERON:0002008 name: cardiac nerve plexus alt_id: UBERON:FMA_6628-MA_0001138 def: "a plexus of nerves situated at the base of the heart that innervate the heart." [Wikipedia:Cardiac_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cardiac nerve plexus" EXACT [] synonym: "Cardiac plexus" EXACT [] synonym: "cardiac plexus" EXACT [] xref: FMA:6628 xref: MA:0001138 xref: ncithesaurus:Cardiac_Nerve_Plexus is_a: UBERON:0001816 ! autonomic nerve plexus intersection_of: UBERON:0001816 ! autonomic nerve plexus intersection_of: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002009 name: pulmonary nerve plexus alt_id: UBERON:FMA_6629-MA_0001143 def: "." [Wikipedia:Pulmonary_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pulmonary nerve plexus" EXACT [] synonym: "Pulmonary plexus" EXACT [] synonym: "pulmonary plexus" EXACT [] xref: FMA:6629 xref: MA:0001143 is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002010 name: celiac nerve plexus alt_id: UBERON:FMA_6630-MA_0001139 def: "." [Wikipedia:Celiac_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Celiac nerve plexus" EXACT [] synonym: "Celiac plexus" EXACT [] synonym: "celiac plexus" EXACT [] synonym: "Coeliac nerve plexus" EXACT [] synonym: "coeliac nerve plexus" RELATED [] synonym: "Coeliac plexus" EXACT [] synonym: "coeliac plexus" EXACT [] xref: FMA:6630 xref: GAID:796 xref: MA:0001139 is_a: UBERON:0001816 ! autonomic nerve plexus [Term] id: UBERON:0002011 name: thoracodorsal artery alt_id: UBERON:FMA_66320-MA_0002065 def: "." [Wikipedia:Thoracodorsal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Thoracodorsal artery" EXACT [] xref: FMA:66320 xref: MA:0002065 xref: ncithesaurus:Thoracodorsal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002012 name: pulmonary artery alt_id: UBERON:FMA_66326-MA_0002031 def: "." [Wikipedia:Pulmonary_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pulmonary arterial tree" EXACT [] synonym: "pulmonary arterial tree" EXACT [] synonym: "Pulmonary arterial tree organ part" EXACT [] synonym: "pulmonary arterial tree organ part" EXACT [] synonym: "Pulmonary artery" EXACT [] xref: BTO:0000778 xref: EFO:0001399 xref: EHDAA:4351 xref: FMA:66326 xref: GAID:505 xref: HOG:0000982 xref: MA:0002031 xref: ncithesaurus:Pulmonary_Artery xref: OpenCyc:Mx4rvVjbIpwpEbGdrcN5Y29ycA is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002013 name: superior hypogastric nerve plexus alt_id: UBERON:FMA_6642-MA_0001142 def: "." [Wikipedia:Superior_hypogastric_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Presacral nerve" EXACT [] synonym: "presacral nerve" EXACT [] synonym: "Superior hypogastric nerve plexus" EXACT [] synonym: "Superior hypogastric plexus" EXACT [] synonym: "superior hypogastric plexus" EXACT [] xref: FMA:6642 xref: MA:0001142 is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0001816 ! autonomic nerve plexus [Term] id: UBERON:0002014 name: inferior hypogastric nerve plexus alt_id: UBERON:FMA_6643-MA_0001141 def: "." [Wikipedia:Inferior_hypogastric_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Inferior hypogastric nerve plexus" EXACT [] synonym: "Inferior hypogastric plexus" EXACT [] synonym: "inferior hypogastric plexus" EXACT [] synonym: "Pelvic nerve plexus" EXACT [] synonym: "pelvic nerve plexus" EXACT [] synonym: "Pelvic plexus" EXACT [] synonym: "pelvic plexus" EXACT [] xref: FMA:6643 xref: MA:0001141 xref: ncithesaurus:Inferior_Hypogastric_Nerve_Plexus is_a: UBERON:0001816 ! autonomic nerve plexus relationship: part_of UBERON:0001816 ! autonomic nerve plexus [Term] id: UBERON:0002015 name: fibrous capsule of kidney alt_id: UBERON:FMA_66610-MA_0000370 def: "." [Wikipedia:Kidney_capsule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Capsule of kidney" EXACT [] synonym: "capsule of kidney" EXACT [] synonym: "Fibrous capsule of kidney" EXACT [] synonym: "kidney capsule" EXACT [] synonym: "renal capsule" RELATED [] xref: FMA:66610 xref: galen:CapsuleOfKidney xref: MA:0000370 is_a: UBERON:0002384 ! connective tissue is_a: UBERON:0003567 ! implied link automatically realized ! abdomen connective tissue relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0002016 name: pulmonary vein alt_id: UBERON:FMA_66643-MA_0002206-XAO_0000394 def: "Pulmonary veins are blood vessels that transport blood from the lungs to the heart[GO]." [Wikipedia:Pulmonary_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pulmonary vein" EXACT [] synonym: "Pulmonary venous tree organ part" EXACT [] synonym: "pulmonary venous tree organ part" EXACT [] xref: BTO:0001799 xref: EHDAA:2629 xref: FMA:66643 xref: GAID:543 xref: HOG:0001133 xref: MA:0002206 xref: ncithesaurus:Pulmonary_Vein xref: XAO:0000394 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002017 name: portal vein alt_id: UBERON:FMA_66645-MA_0002198-XAO_0000392 def: "." [Wikipedia:Portal_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Portal vein" EXACT [] synonym: "Portal venous tree organ part" EXACT [] synonym: "portal venous tree organ part" EXACT [] xref: BTO:0001792 xref: EHDAA:6510 xref: FMA:66645 xref: GAID:540 xref: HOG:0000656 xref: MA:0002198 xref: ncithesaurus:Portal_Vein xref: OpenCyc:Mx4rv_bem5wpEbGdrcN5Y29ycA xref: XAO:0000392 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002018 name: synovial membrane alt_id: UBERON:FMA_66762-MA_0000114 def: "Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints)." [Wikipedia:Synovial_membrane] comment: TODO - check membrane vs sheath subset: uberon_slim synonym: "Synovial layer" EXACT [] synonym: "synovial layer" EXACT [] synonym: "Synovial membrane" EXACT [] synonym: "synovial sheath" RELATED [] synonym: "synovium" EXACT [] xref: BTO:0001823 xref: EFO:0001393 xref: FMA:66762 xref: GAID:264 xref: HOG:0001282 xref: MA:0000114 xref: ncithesaurus:Synovial_Membrane is_a: UBERON:0000042 ! serous membrane [Term] id: UBERON:0002019 name: spinal accessory nerve alt_id: UBERON:FMA_6720-MA_0001088 def: "In mice, the spinal branch of this motor nerve innervates the trapezius and the sternocleidomastoid muscles. The cranial branch joins the vagus nerve and innervates the same targets as the vagus nerve[GO]." [Wikipedia:Spinal_accessory_nerve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Accessory nerve" EXACT [] synonym: "accessory nerve" EXACT [] synonym: "Accessory nerve [XI]" EXACT [] synonym: "accessory nerve [xi]" EXACT [] synonym: "accessory XI nerve" EXACT [] synonym: "accessory xi nerve" EXACT [] synonym: "Cervical accessory nerve" EXACT [] synonym: "cervical accessory nerve" EXACT [] synonym: "Spinal accessory nerve" EXACT [] synonym: "Spinal accessory nerve tree" EXACT [] synonym: "spinal accessory nerve tree" EXACT [] synonym: "Spinal part of accessory nerve" EXACT [] synonym: "spinal part of accessory nerve" EXACT [] synonym: "Willis' nerve" EXACT [] synonym: "willis' nerve" EXACT [] xref: FMA:6720 xref: GAID:825 xref: MA:0001088 xref: ncithesaurus:Accessory_Nerve xref: NIF_GrossAnatomy:birnlex_812 is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0002020 name: gray matter of neuraxis alt_id: UBERON:FMA_67242-MA_0001112 def: "Heterogeneous cluster of neural somas in the brain and the spinal cord." [Wikipedia:Gray_matter] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Gray matter" EXACT [] synonym: "gray matter" EXACT [] synonym: "Gray matter of neuraxis" EXACT [] synonym: "Grey matter" EXACT [] synonym: "grey matter" EXACT [] synonym: "Grey substance" EXACT [] synonym: "grey substance" EXACT [] xref: FMA:67242 xref: MA:0001112 xref: ncithesaurus:Gray_Matter xref: ZFA:0001681 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0002021 name: occipital lobe alt_id: UBERON:FMA_67325-MA_0000913-ZFA_0001414 def: "Occipital lobe is the one of five lobes of the cerebral hemisphere which occupies the posterior-most portion of the hemisphere. Anteriorly, it shares an arbitrary border with the parietal lobe and temporal lobe. Medially, it is bounded by the longitudinal cerebral fissure." [Wikipedia:Occipital_lobe] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "basicranial region" RELATED [] synonym: "Occipital cortex" EXACT [] synonym: "occipital cortex" EXACT [] synonym: "Occipital lobe" EXACT [] synonym: "Occipital region" EXACT [] synonym: "occipital region" EXACT [] xref: BTO:0000293 xref: EFO:0000915 xref: FMA:67325 xref: GAID:678 xref: MA:0000913 xref: MAT:0000507 xref: ncithesaurus:Occipital_Lobe xref: NIF_GrossAnatomy:birnlex_1136 xref: OpenCyc:Mx4rv9OFy5wpEbGdrcN5Y29ycA xref: TAO:0001414 xref: ZFA:0001414 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: adjacent_to UBERON:0001871 ! temporal lobe relationship: adjacent_to UBERON:0001872 ! parietal lobe relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0001950 ! neocortex relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0002022 name: insula alt_id: UBERON:FMA_67329-MA_0000909 def: "The insula is the one of five lobes of the cerebral hemisphere. It lies in the depths of the lateral fissure and is covered by portions of the frontal, parietal and temporal lobes." [Wikipedia:Insula] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Central lobe" EXACT [] synonym: "central lobe" EXACT [] synonym: "Cortex of island" EXACT [] synonym: "cortex of island" EXACT [] synonym: "Insula" EXACT [] synonym: "Insula lobule" EXACT [] synonym: "insula lobule" EXACT [] synonym: "Insular cortex" EXACT [] synonym: "insular cortex" EXACT [] synonym: "Insular lobe" EXACT [] synonym: "insular lobe" EXACT [] synonym: "Insular region" EXACT [] synonym: "insular region" EXACT [] synonym: "Island of Reil" EXACT [] synonym: "island of reil" EXACT [] xref: BTO:0001105 xref: FMA:67329 xref: MA:0000909 xref: ncithesaurus:Central_Lobe xref: NIF_GrossAnatomy:birnlex_1117 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0002023 name: claustrum alt_id: UBERON:FMA_67440-MA_0000888 def: "Subdivision located in the telencephalon which is a member of the anatomical set \"Basal ganglia\". The claustrum is made up primarily of cellular neural tissue (gray matter), and is located lateral to the caudate nucleus and external capsule and medial to the insula." [Wikipedia:Claustrum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Claustrum" EXACT [] synonym: "Dorsal claustrum" EXACT [] synonym: "dorsal claustrum" EXACT [] synonym: "Dorsal portion of claustrum" EXACT [] synonym: "dorsal portion of claustrum" EXACT [] xref: FMA:67440 xref: MA:0000888 xref: ncithesaurus:Claustrum xref: NIF_GrossAnatomy:birnlex_1522 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001869 ! cerebral hemisphere relationship: part_of UBERON:0002420 ! basal ganglia [Term] id: UBERON:0002024 name: internal carotid nerve plexus alt_id: UBERON:FMA_67533-MA_0001162 def: "." [Wikipedia:Internal_carotid_nerve_plexus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Internal carotid nerve plexus" EXACT [] synonym: "Internal carotid plexus" EXACT [] synonym: "internal carotid plexus" EXACT [] xref: FMA:67533 xref: MA:0001162 xref: ncithesaurus:Internal_Carotid_Nerve_Plexus is_a: UBERON:0001816 ! autonomic nerve plexus [Term] id: UBERON:0002025 name: basal cell layer of epidermis alt_id: UBERON:FMA_67540-MA_0000803 def: "Deepest layer of the layers of the epidermis[WP]." [Wikipedia:Stratum_germinativum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Basal cell layer of epidermis" EXACT [] synonym: "epidermis basal layer" RELATED [] synonym: "epidermis stratum basale" EXACT [] synonym: "epidermis stratum germinativum" RELATED [] synonym: "Stratum basale of epidermis" EXACT [] synonym: "stratum basale of epidermis" EXACT [] synonym: "Stratum basalis of epidermis" EXACT [] synonym: "stratum basalis of epidermis" EXACT [] synonym: "Stratum germinativum" EXACT [] synonym: "stratum germinativum" EXACT [] xref: BTO:0000438 xref: FMA:67540 xref: MA:0000803 is_a: UBERON:0000119 ! cell layer relationship: part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0002026 name: prickle cell layer of epidermis alt_id: UBERON:FMA_67542-MA_0000807 def: "a layer of the epidermis found between the stratum granulosum and stratum basale. Has cells that produce and secrete bipolar lipids which prevent evaporation, helping to " [Wikipedia:Stratum_spinosum] comment: This class was created automatically from a combination of ontologies synonym: "epidermis prickle cell layer" RELATED [] synonym: "epidermis stratum spinosum" EXACT [] synonym: "Prickle cell layer of epidermis" EXACT [] synonym: "Squamous cell layer of epidermis" EXACT [] synonym: "squamous cell layer of epidermis" EXACT [] synonym: "Stratum Malphighii" EXACT [] synonym: "stratum malphighii" EXACT [] synonym: "stratum spinosum" EXACT [] synonym: "Stratum spinosum of epidermis" EXACT [] synonym: "stratum spinosum of epidermis" EXACT [] xref: FMA:67542 xref: MA:0000807 is_a: UBERON:0000061 ! anatomical structure relationship: adjacent_to UBERON:0002025 ! basal cell layer of epidermis relationship: adjacent_to UBERON:0002069 ! granular layer of epidermis relationship: part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0002027 name: horny layer of epidermis alt_id: UBERON:FMA_67545-MA_0000804 def: "outermost layer of the epidermis, composed of large, flat, polyhedral, plate-like envelopes filled with keratin, which is made up of dead cells that have migrated up from the stratum granulosum." [Wikipedia:Stratum_corneum] synonym: "epidermis stratum corneum" EXACT [] synonym: "Horny layer of epidermis" EXACT [] synonym: "stratum corneum" EXACT [] synonym: "Stratum corneum of epidermis" EXACT [] synonym: "stratum corneum of epidermis" EXACT [] xref: FMA:67545 xref: MA:0000804 is_a: UBERON:0003055 ! outermost layer of epidermis [Term] id: UBERON:0002028 name: hindbrain alt_id: UBERON:FMA_67687-MA_0000195-MIAA_0000107-XAO_0000015-ZFA_0000029 def: "Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata . Examples: There is only one hindbrain. // The most posterior of the three principal regions of the brain, forming the rhombencephalon and all or most of the metencephalon. Kimmel et al, 1995." [Wikipedia:Hindbrain, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hindbrain" EXACT [] synonym: "rhombencephalon" RELATED [] xref: BTO:0000672 xref: EFO:0000923 xref: EHDAA:3514 xref: EHDAA:6487 xref: FMA:67687 xref: HOG:0000070 xref: MA:0000195 xref: MAT:0000107 xref: MIAA:0000107 xref: NIF_GrossAnatomy:birnlex_942 xref: TAO:0000029 xref: XAO:0000015 xref: ZFA:0000029 is_a: UBERON:0002616 ! regional part of brain relationship: develops_from UBERON:0003076 ! posterior neural tube relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0002029 name: epithelium of gall bladder alt_id: UBERON:FMA_67711-MA_0001632 comment: This class was created automatically from a combination of ontologies synonym: "biliary epithelium" RELATED [] synonym: "Epithelium of gall bladder" EXACT [] synonym: "Gall bladder epithelium" EXACT [] synonym: "gall bladder epithelium" EXACT [] xref: BTO:0001449 xref: FMA:67711 xref: MA:0001632 is_a: UBERON:0000485 ! simple columnar epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002110 ! gallbladder relationship: part_of UBERON:0002110 ! gallbladder [Term] id: UBERON:0002030 name: nipple alt_id: UBERON:FMA_67771-MA_0000796 def: "Projection of skin containing the outlets for 15-20 lactiferous ducts arranged cylindrically around the tip." [Wikipedia:Nipple] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Nipple" EXACT [] synonym: "papilla mammae" EXACT [MP:0009723] synonym: "papilla of breast" EXACT [] synonym: "Papillary part of breast" EXACT [] synonym: "papillary part of breast" EXACT [] synonym: "Teat" EXACT [] synonym: "teat" EXACT [] synonym: "thele" EXACT [MP:0009723] synonym: "thelium" EXACT [MP:0009723] xref: BTO:0000821 xref: FMA:67771 xref: GAID:35 xref: MA:0000796 xref: ncithesaurus:Nipple xref: OpenCyc:Mx4rvVjKi5wpEbGdrcN5Y29ycA is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0001911 ! lactiferous gland [Term] id: UBERON:0002031 name: epithelium of bronchus alt_id: UBERON:FMA_67782-MA_0001839 comment: This class was created automatically from a combination of ontologies synonym: "Bronchial epithelium" EXACT [] synonym: "bronchial epithelium" EXACT [] synonym: "bronchus epithelium" EXACT [] synonym: "Epithelium of bronchus" EXACT [] xref: BTO:0001845 xref: EFO:0000307 xref: FMA:67782 xref: MA:0001839 xref: ncithesaurus:Bronchial_Epithelium is_a: UBERON:0000485 ! simple columnar epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0002032 name: areola alt_id: UBERON:FMA_67796-MA_0000788 def: "Subdivision of breast which consists of skin, connective tissue and smooth muscle bundle and modified sebaceous glands and which surrounds the nipple." [Wikipedia:Areola] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Areola" EXACT [] xref: FMA:67796 xref: MA:0000788 xref: ncithesaurus:Areola is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0001911 ! lactiferous gland [Term] id: UBERON:0002033 name: arrector muscle of hair alt_id: UBERON:FMA_67821-MA_0000778 def: "tiny muscle fiber attached to each hair follicle, which contract to make the hairs stand on end, causing goose bumps. They exist in most mammals including humans." [http://en.wikipedia.org/wiki/Arrector_pili, Wikipedia:Arrector_pili] subset: uberon_slim synonym: "arrector pili" EXACT [FMA:67821, MA:0000778] xref: FMA:67821 xref: MA:0000778 is_a: UBERON:0001135 ! smooth muscle tissue relationship: attached_to UBERON:0002073 ! hair follicle [Term] id: UBERON:0002034 name: suprachiasmatic nucleus alt_id: UBERON:FMA_67883-MA_0000843-ZFA_0000441 def: "." [Wikipedia:Suprachiasmatic_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Suprachiasmatic nucleus" EXACT [] synonym: "Suprachiasmatic nucleus of hypothalamus" EXACT [] synonym: "suprachiasmatic nucleus of hypothalamus" EXACT [] xref: BTO:0001822 xref: EFO:0002475 xref: FMA:67883 xref: GAID:645 xref: HOG:0000036 xref: MA:0000843 xref: ncithesaurus:Suprachiasmatic_Nucleus xref: NIF_GrossAnatomy:birnlex_1325 xref: TAO:0000441 xref: ZFA:0000441 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus relationship: part_of UBERON:0002272 ! medial zone of hypothalamus [Term] id: UBERON:0002035 name: medial preoptic nucleus alt_id: UBERON:FMA_67890-MA_0000840 def: "." [Wikipedia:Medial_preoptic_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Medial preoptic area" EXACT [] synonym: "medial preoptic area" EXACT [] synonym: "Medial preoptic hypothalamic nucleus" EXACT [] synonym: "medial preoptic hypothalamic nucleus" EXACT [] synonym: "Medial preoptic nucleus" EXACT [] xref: FMA:67890 xref: MA:0000840 xref: NIF_GrossAnatomy:birnlex_706 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0001928 ! preoptic area [Term] id: UBERON:0002036 name: striated muscle tissue alt_id: UBERON:FMA_67905-MA_0002438 def: "Tissue which consists of striated muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue, Cardiac muscle tissue[FMA]." [FMA:67905, Wikipedia:Striated_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "striated muscle" EXACT [] synonym: "Striated muscle tissue" EXACT [] xref: FMA:67905 xref: MA:0002438 xref: ncithesaurus:Striated_Muscle_Tissue is_a: UBERON:0002385 ! muscle tissue [Term] id: UBERON:0002037 name: cerebellum alt_id: UBERON:FMA_67944-FMA_78469-MA_0000196-MA_0000198-MIAA_0000110-XAO_0003098-XAO_0003099-ZFA_0000100-ZFA_0000110 def: "Organ component of neuraxis that has as its parts the cerebellar cortex, cerebellar nuclear complex and cerebellar white matter. Examples: There is only one cerebellum. // Specialized brain region derived from the dorsal metencephalon (anterior hindbrain, and perhaps including posterior midbrain) and becoming distinctive late in the segmentation period. Kimmel et al, 1995. // Fluid-filled brain cavity. Kimmel et al, 1995." [Wikipedia:Cerebellum, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cerebellum" EXACT [] synonym: "Epencephalon-1" EXACT [] synonym: "epencephalon-1" EXACT [] synonym: "hindbrain ventricle" RELATED [] synonym: "rhombencephalic ventricle" RELATED [] synonym: "rhombencephalic vesicle" RELATED [] xref: BTO:0000232 xref: EFO:0000327 xref: FMA:67944 xref: GAID:595 xref: HOG:0000024 xref: MA:0000198 xref: MAT:0000110 xref: MIAA:0000110 xref: ncithesaurus:Cerebellum xref: NIF_GrossAnatomy:birnlex_1489 xref: TAO:0000100 xref: XAO:0003098 xref: ZFA:0000100 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon relationship: part_of UBERON:0001895 ! metencephalon [Term] id: UBERON:0002038 name: substantia nigra alt_id: UBERON:FMA_67947-MA_0000210 def: "Subdivision of the midbrain anterior to the midbrain tegmentum which contains darkly pigmented neurons." [Wikipedia:Substantia_nigra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Nucleus of basis pedunculi" EXACT [] synonym: "nucleus of basis pedunculi" EXACT [] synonym: "Soemmering's substance" EXACT [] synonym: "soemmering's substance" EXACT [] synonym: "Substantia nigra" EXACT [] xref: BTO:0000143 xref: EFO:0000922 xref: FMA:67947 xref: GAID:581 xref: MA:0000210 xref: MAT:0000504 xref: ncithesaurus:Substantia_Nigra xref: NIF_GrossAnatomy:birnlex_789 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain relationship: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001900 ! subthalamus [Term] id: UBERON:0002039 name: inferior phrenic vein alt_id: UBERON:FMA_68068-MA_0002195 def: "." [Wikipedia:Inferior_phrenic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Inferior phrenic vein" EXACT [] xref: FMA:68068 xref: MA:0002195 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002040 name: bronchial artery alt_id: UBERON:FMA_68109-MA_0001923 def: "." [Wikipedia:Bronchial_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bronchial arterial tree" EXACT [] synonym: "bronchial arterial tree" EXACT [] synonym: "Bronchial artery" EXACT [] xref: FMA:68109 xref: GAID:477 xref: MA:0001923 xref: ncithesaurus:Bronchial_Artery xref: OpenCyc:Mx4r4sy0UiNbEd2AAAACs6hRXg is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002041 name: terminal bronchus alt_id: UBERON:FMA_68416-MA_0000440 comment: This class was created automatically from a combination of ontologies synonym: "Terminal bronchus" EXACT [] xref: FMA:68416 xref: MA:0000440 is_a: UBERON:0002185 ! bronchus [Term] id: UBERON:0002042 name: endothelium of lymphatic vessel alt_id: UBERON:FMA_68444-MA_0000750 comment: This class was created automatically from a combination of ontologies synonym: "Endothelium of lymphatic vessel" EXACT [] synonym: "Lymphatic vessel endothelium" EXACT [] synonym: "lymphatic vessel endothelium" EXACT [] xref: FMA:68444 xref: MA:0000750 xref: ncithesaurus:Lymphatic_Vessel_Endothelium is_a: UBERON:0001986 ! endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0001473 ! lymphatic vessel relationship: part_of UBERON:0001473 ! lymphatic vessel [Term] id: UBERON:0002043 name: dorsal raphe nucleus alt_id: UBERON:FMA_68462-ZFA_0000366 def: "." [Wikipedia:Dorsal_raphe_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cell group B7" EXACT [] synonym: "cell group b7" EXACT [] synonym: "Dorsal nucleus of the raphe" EXACT [] synonym: "dorsal nucleus of the raphe" EXACT [] synonym: "Dorsal nucleus raphe" EXACT [] synonym: "dorsal nucleus raphe" EXACT [] synonym: "Dorsal raphe nucleus" EXACT [] synonym: "inferior raphe nucleus" EXACT [] synonym: "Posterior raphe nucleus" EXACT [] synonym: "posterior raphe nucleus" RELATED [] xref: BTO:0002434 xref: EFO:0001919 xref: FMA:68462 xref: NIF_GrossAnatomy:birnlex_982 xref: TAO:0000366 xref: ZFA:0000366 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002044 name: ventral nucleus of posterior commissure alt_id: UBERON:FMA_68464-MA_0001072 comment: This class was created automatically from a combination of ontologies synonym: "Darkshevich's nucleus" EXACT [] synonym: "darkshevich's nucleus" EXACT [] synonym: "Nucleus of Darkschewitsch" EXACT [] synonym: "nucleus of darkschewitsch" EXACT [] synonym: "Ventral nucleus of posterior commissure" EXACT [] xref: FMA:68464 xref: MA:0001072 xref: NIF_GrossAnatomy:birnlex_896 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002045 name: cuneate nucleus alt_id: UBERON:FMA_68465-MA_0001035 def: "." [Wikipedia:Cuneate_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Burdach's nucleus" EXACT [] synonym: "burdach's nucleus" EXACT [] synonym: "Cuneate nucleus" EXACT [] xref: FMA:68465 xref: MA:0001035 xref: ncithesaurus:Cuneate_Nucleus xref: NIF_GrossAnatomy:birnlex_2640 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002046 name: thyroid follicle alt_id: UBERON:FMA_68805-FMA_9603-MA_0000129-MA_0000726-MIAA_0000081-XAO_0000162-ZFA_0001072 def: "Lobular organ the parenchyma of which consists of ductless, glandular follicles filled with colloid. Examples: thyroid gland proper, accessory thyroid gland, lingual thyroid gland." [Wikipedia:Thyroid_follicle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "thyroid" EXACT [] synonym: "Thyroid follicle" EXACT [] synonym: "Thyroid gland" EXACT [] synonym: "thyroid gland" EXACT [] synonym: "thyroid gland follicle" EXACT [] synonym: "thyroid primordium" BROAD [] xref: BTO:0001379 xref: EFO:0000861 xref: EHDAA:2148 xref: EHDAA:2975 xref: FMA:68805 xref: FMA:9603 xref: GAID:465 xref: HOG:0000418 xref: MA:0000129 xref: MA:0000726 xref: MAT:0000081 xref: MIAA:0000081 xref: ncithesaurus:Thyroid_Gland xref: OpenCyc:Mx4rvVjLT5wpEbGdrcN5Y29ycA xref: TAO:0001072 xref: XAO:0000162 xref: ZFA:0001072 is_a: UBERON:0002530 ! gland relationship: develops_from UBERON:0003091 ! thyroid primordium relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0002047 name: pontine raphe nucleus alt_id: UBERON:FMA_68875-MA_0001022 def: "." [Wikipedia:Pontine_raphe_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pontine raphe nucleus" EXACT [] synonym: "Raphe of pons" EXACT [] synonym: "raphe of pons" EXACT [] synonym: "Raphe pontis nucleus" EXACT [] synonym: "raphe pontis nucleus" RELATED [] xref: FMA:68875 xref: MA:0001022 xref: NIF_GrossAnatomy:birnlex_1110 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002048 name: lung alt_id: UBERON:FMA_68877-FMA_7195-MA_0000415-MIAA_0000135-XAO_0000119 def: "Lobular organ the parenchyma of which consists of air-filled alveoli which communicate with the tracheobronchial tree. Examples: There are only two instances, right lung and left lung. // Saccular thoracic organ that constitutes the basic respiratory organ." [BTO:0000763, Wikipedia:Lung] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: AAO:0000275 xref: BTO:0000763 xref: EFO:0000934 xref: EHDAA:1554 xref: EHDAA:2205 xref: FMA:7195 xref: GAID:345 xref: MA:0000415 xref: MAT:0000135 xref: MIAA:0000135 xref: ncithesaurus:Lung xref: OpenCyc:Mx4rvVjKy5wpEbGdrcN5Y29ycA xref: XAO:0000119 is_a: UBERON:0000171 ! respiration organ relationship: develops_from UBERON:0000118 ! lung bud relationship: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0002049 name: vasculature alt_id: UBERON:FMA_69050-XAO_0001010-ZFA_0001079 def: "Anatomical system that has as its parts the blood and lymph vessels." [Wikipedia:Vasculature, XB:curator] comment: This class was created automatically from a combination of ontologies. subset: uberon_slim synonym: "Vascular network" EXACT [] synonym: "vascular network" EXACT [] synonym: "Vasculature" EXACT [] xref: BTO:0003718 xref: FMA:69050 xref: TAO:0001079 xref: XAO:0001010 xref: ZFA:0001079 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002050 name: embryonic structure alt_id: UBERON:FMA_69067-XAO_0003042-ZFA_0001105 def: "An anatomical structure that exists only before the organism is fully formed. // Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells." [BTO:0000174, ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "developing structure" RELATED [] synonym: "Embryonic structure" EXACT [] xref: AAO:0000138 xref: BILA:0000034 xref: BTO:0000174 xref: EFO:0000461 xref: FMA:69067 xref: GAID:407 xref: ncithesaurus:Embryonic_Structure xref: TAO:0001105 xref: XAO:0003042 xref: ZFA:0001105 is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: existence_ends_during UBERON:0000068 ! embryo stage intersection_of: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0002051 name: epithelium of bronchiole alt_id: UBERON:FMA_69077-MA_0001772 comment: This class was created automatically from a combination of ontologies synonym: "Bronchiole epithelium" EXACT [] synonym: "bronchiole epithelium" EXACT [] synonym: "Epithelium of bronchiole" EXACT [] xref: FMA:62497 xref: FMA:69077 xref: MA:0001772 xref: ncithesaurus:Bronchiole_Epithelium is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium is_a: UBERON:0000485 ! simple columnar epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002186 ! bronchiole relationship: part_of UBERON:0002186 ! bronchiole [Term] id: UBERON:0002052 name: capsule of adrenal gland alt_id: UBERON:FMA_69087-MA_0000117 comment: This class was created automatically from a combination of ontologies synonym: "Adrenal gland capsule" EXACT [] synonym: "adrenal gland capsule" EXACT [] synonym: "Capsule of adrenal gland" EXACT [] xref: FMA:69087 xref: MA:0000117 xref: ncithesaurus:Adrenal_Gland_Capsule is_a: UBERON:0003893 ! capsule intersection_of: UBERON:0003893 ! capsule intersection_of: surrounds UBERON:0002369 ! adrenal gland relationship: surrounds UBERON:0002369 ! adrenal gland [Term] id: UBERON:0002053 name: zona glomerulosa of adrenal gland alt_id: UBERON:FMA_69225-MA_0001891 def: "." [Wikipedia:Zona_glomerulosa] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "adrenal gland zona glomerulosa" EXACT [] synonym: "Zona glomerulosa" EXACT [] synonym: "zona glomerulosa" EXACT [] synonym: "Zona glomerulosa of adrenal gland" EXACT [] synonym: "Zona glomerulosa of suprarenal gland" EXACT [] synonym: "zona glomerulosa of suprarenal gland" EXACT [] xref: BTO:0000048 xref: FMA:69225 xref: GAID:449 xref: MA:0001891 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001235 ! adrenal cortex [Term] id: UBERON:0002054 name: zona fasciculata of adrenal gland alt_id: UBERON:FMA_69234-MA_0001890 def: "." [Wikipedia:Zona_fasciculata] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "adrenal gland zona fasciculata" EXACT [] synonym: "Zona fasciculata" EXACT [] synonym: "zona fasciculata" EXACT [] synonym: "Zona fasciculata of adrenal gland" EXACT [] synonym: "Zona fasciculata of suprarenal gland" EXACT [] synonym: "zona fasciculata of suprarenal gland" EXACT [] xref: BTO:0000050 xref: FMA:69234 xref: GAID:448 xref: MA:0001890 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001235 ! adrenal cortex [Term] id: UBERON:0002055 name: zona reticularis of adrenal gland alt_id: UBERON:FMA_69236-MA_0001892 def: "." [Wikipedia:Zona_reticularis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "adrenal gland zona reticularis" EXACT [] synonym: "Zona reticularis" EXACT [] synonym: "zona reticularis" EXACT [] synonym: "Zona reticularis of adrenal gland" EXACT [] synonym: "Zona reticularis of suprarenal gland" EXACT [] synonym: "zona reticularis of suprarenal gland" EXACT [] xref: FMA:69236 xref: GAID:450 xref: MA:0001892 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001235 ! adrenal cortex [Term] id: UBERON:0002056 name: inferior suprarenal artery alt_id: UBERON:FMA_69264-MA_0002056 def: "." [Wikipedia:Inferior_suprarenal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Inferior suprarenal artery" EXACT [] xref: FMA:69264 xref: MA:0002056 xref: ncithesaurus:Inferior_Suprarenal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002057 name: phrenic artery alt_id: UBERON:FMA_69330-MA_0002019 def: "." [Wikipedia:Phrenic_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Phrenic artery" EXACT [] xref: FMA:69330 xref: MA:0002019 xref: ncithesaurus:Phrenic_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002058 name: ciliary ganglion alt_id: UBERON:FMA_6964-MA_0001136 def: "." [Wikipedia:Ciliary_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ciliary ganglion" EXACT [] xref: EFO:0002559 xref: FMA:6964 xref: HOG:0000805 xref: MA:0001136 is_a: UBERON:0001808 ! parasympathetic ganglion [Term] id: UBERON:0002059 name: submandibular ganglion alt_id: UBERON:FMA_6966-MA_0002470 def: "." [Wikipedia:Submandibular_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Submandibular ganglion" EXACT [] xref: BTO:0001318 xref: FMA:6966 xref: MA:0002470 xref: ncithesaurus:Submandibular_Ganglion is_a: UBERON:0001808 ! parasympathetic ganglion [Term] id: UBERON:0002060 name: femoral artery alt_id: UBERON:FMA_70248-MA_0001951 def: "." [Wikipedia:Femoral_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Femoral artery" EXACT [] xref: BTO:0001624 xref: FMA:70248 xref: GAID:494 xref: galen:FemoralArtery xref: MA:0001951 xref: ncithesaurus:Femoral_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002061 name: truncus arteriosus alt_id: UBERON:FMA_70301-MA_0000103 def: "." [Wikipedia:Truncus_arteriosus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Truncus arteriosus" EXACT [] xref: FMA:70301 xref: GAID:554 xref: MA:0000103 xref: OpenCyc:Mx4rquH9YKgNEdudWQACs5b6Bw is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0002062 name: endocardial cushion alt_id: UBERON:FMA_70302-MA_0000078-ZFA_0001317 def: "Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves." [Wikipedia:Endocardial_cushion, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Endocardial cushion" EXACT [] synonym: "endocardial cushions" RELATED [] xref: FMA:70302 xref: HOG:0000932 xref: MA:0000078 xref: TAO:0001317 xref: ZFA:0001317 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002063 name: sinus venosus alt_id: UBERON:FMA_70303-ZFA_0000154 def: "a large quadrangular cavity which precedes the atrium on the venous side of the chordate heart. In humans, it exists distinctly only in the embryonic heart, where it is found between the two venae cavae. In the adult, it is incorporated into the wall of the right atrium to form a smooth part called the sinus venarum, also known as the venarum sinus, which is separated from the rest of the atrium by a ridge of fibres called the crista terminalis[Wikipedia]. Heart region collecting blood from the paired common cardinal veins and delivering to the atrium. One of four heart chambers, the sinus venosus also acts as a pacemaker and is the first to contract. Kimmel et al, 1995." [Wikipedia:Sinus_venosus, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sinus venosus" EXACT [] xref: EHDAA:480 xref: FMA:70303 xref: HOG:0000177 xref: ncithesaurus:Sinus_Venosus xref: TAO:0000154 xref: ZFA:0000154 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002064 name: common cardinal vein alt_id: UBERON:FMA_70308-ZFA_0000186 def: "Bilaterally paired longitudinal vein; the anterior cardinal returns blood from the head, and the posterior cardinal returns it from the trunk; these two vessels join together on each side as the common cardinal vein (duct of Cuvier; misnamed the vitelline vein) that leads across the yolk cell to the heart's sinus venosus. Kimmel et al, 1995." [Wikipedia:Common_cardinal_vein, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Common cardinal vein" EXACT [] synonym: "duct of Cuvier" RELATED [] xref: FMA:70308 xref: HOG:0000112 xref: ncithesaurus:Common_Cardinal_Vein xref: TAO:0000186 xref: ZFA:0000186 is_a: UBERON:0001638 ! vein is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel relationship: part_of UBERON:0002201 ! vasculature of trunk [Term] id: UBERON:0002065 name: postcardinal vein alt_id: UBERON:FMA_70314-ZFA_0000477 def: "Continuation of the caudal vein cranial to the anal pore. The cardinal vein splits into a pair of vessels in the cranial trunk, just caudal to the radix of the aorta. The posterior cardinals each empty into the common cardinal vein. " [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "axial vein" RELATED [] synonym: "caudal cardinal veins" RELATED [] synonym: "PCV" RELATED [] synonym: "Postcardinal vein" EXACT [] synonym: "posterior cardinal vein" EXACT [] xref: FMA:70314 xref: HOG:0000111 xref: ncithesaurus:Posterior_Cardinal_Vein xref: TAO:0000477 xref: ZFA:0000477 is_a: UBERON:0001638 ! vein is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel relationship: part_of UBERON:0002201 ! vasculature of trunk [Term] id: UBERON:0002066 name: umbilical vein alt_id: UBERON:FMA_70317-MA_0002249 def: "." [Wikipedia:Umbilical_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Umbilical vein" EXACT [] xref: BTO:0001509 xref: EFO:0001940 xref: EHDAA:1034 xref: EHDAA:488 xref: FMA:70317 xref: GAID:542 xref: MA:0002249 xref: ncithesaurus:Umbilical_Vein xref: OpenCyc:Mx4rdu17MmWaEd2AAABQjYGu0g is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002067 name: dermis alt_id: UBERON:FMA_70323-MA_0000152-MIAA_0000153-XAO_0000217-ZFA_0001119 def: "Dense irregular connective tissue which consists of a papillary layer and a reticular layer. // A collagenous layer of the skin subjacent to the epidermis and covering the hypodermis. It contains various types of cells (e.g. fibroblasts, pigment cells, nerve, blood vessels and scales. Le Guellec et al, 2004." [Wikipedia:Dermis, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Dermis" EXACT [] xref: AAO:0000128 xref: BTO:0000294 xref: EFO:0000953 xref: FMA:70323 xref: GAID:1321 xref: HOG:0000108 xref: MA:0000152 xref: MAT:0000153 xref: MIAA:0000153 xref: ncithesaurus:Dermis xref: TAO:0001119 xref: XAO:0000217 xref: ZFA:0001119 is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0002199 ! integument [Term] id: UBERON:0002068 name: urachus alt_id: UBERON:FMA_70343-MA_0001701 def: "." [Wikipedia:Urachus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Urachus" EXACT [] xref: EHDAA:7016 xref: EHDAA:9332 xref: FMA:70343 xref: GAID:1313 xref: HOG:0000735 xref: MA:0001701 xref: ncithesaurus:Urachus is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001255 ! urinary bladder [Term] id: UBERON:0002069 name: granular layer of epidermis alt_id: UBERON:FMA_70344-MA_0000805 def: "A layer of the epidermis found between the stratum corneum (and possibly stratum lucidum) and stratum spinosum.[1] In this layer, keratinocytes are now called granular cells, and contain keratohyalin and lamellar granules." [Wikipedia:Stratum_granulosum] comment: This class was created automatically from a combination of ontologies synonym: "epidermis granular layer" RELATED [] synonym: "epidermis stratum granulosum" EXACT [] synonym: "Granular layer of epidermis" EXACT [] synonym: "stratum granulosum" EXACT [] synonym: "Stratum granulosum of epidermis" EXACT [] synonym: "stratum granulosum of epidermis" EXACT [] xref: FMA:70344 xref: MA:0000805 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0002070 name: superior pancreaticoduodenal artery alt_id: UBERON:FMA_70437-MA_0002015 def: "." [Wikipedia:Superior_pancreaticoduodenal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "superior pancreatico-duodenal artery" EXACT [] synonym: "Superior pancreaticoduodenal artery" EXACT [] xref: FMA:70437 xref: MA:0002015 xref: ncithesaurus:Superior_Pancreatico-Duodenal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002071 name: stratum lucidum of epidermis alt_id: UBERON:FMA_70540-MA_0000806 comment: This class was created automatically from a combination of ontologies synonym: "epidermis stratum lucidum" EXACT [] synonym: "Stratum conjunctum of epidermis" EXACT [] synonym: "stratum conjunctum of epidermis" EXACT [] synonym: "Stratum lucidum of epidermis" EXACT [] xref: FMA:70540 xref: MA:0000806 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0002072 name: hypodermis alt_id: UBERON:FMA_70544-MIAA_0000418-ZFA_0000117-ZFA_0001136 def: "Lowermost layer of the integumentary system in vertebrates. Types of cells that are found in the hypodermis are fibroblasts, adipose cells, and macrophages. It is derived from the mesoderm, but unlike the dermis, it is not derived from the dermatome region of the mesoderm. In arthropods, the hypodermis is an epidermal layer of cells that secretes the chitinous cuticle. The term also refers to a layer of cells lying immediately below the epidermis of plants. This cell is also used to supervise the outer skin from burns and other such articulates. The hypodermis is used mainly for fat storage[WP]. A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells[FMA]." [Wikipedia:Hypodermis, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "hypoderm" EXACT [] synonym: "Hypodermis" EXACT [] synonym: "subcutaneous tissue" EXACT [] synonym: "subcutis" RELATED [] synonym: "superficial fascia" EXACT [] xref: BTO:0000313 xref: FMA:70544 xref: GAID:929 xref: ncithesaurus:Superficial_Fascia xref: TAO:0001136 xref: ZFA:0001136 is_a: UBERON:0002384 ! connective tissue relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0002199 ! integument [Term] id: UBERON:0002073 name: hair follicle alt_id: UBERON:FMA_70660-MA_0000154 def: "a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open[GO]." [Wikipedia:Hair_follicle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hair follicle" EXACT [] xref: BTO:0000554 xref: EFO:0002464 xref: FMA:70660 xref: GAID:934 xref: HOG:0001268 xref: MA:0000154 xref: ncithesaurus:Hair_Follicle xref: OpenCyc:Mx4rvVjOI5wpEbGdrcN5Y29ycA is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0002097 ! skin [Term] id: UBERON:0002074 name: hair shaft alt_id: UBERON:FMA_70728-MA_0000159 comment: This class was created automatically from a combination of ontologies synonym: "Hair shaft" EXACT [] xref: FMA:70728 xref: MA:0000159 is_a: UBERON:0000021 ! cutaneous appendage relationship: part_of UBERON:0001037 ! hair relationship: part_of UBERON:0002073 ! hair follicle [Term] id: UBERON:0002075 name: viscus alt_id: UBERON:FMA_7085-XAO_0003034 def: "An organ that is located within the body cavity (or in its extension, in the scrotum); it consists of organ parts that are embryologically derived from endoderm, splanchnic mesoderm or intermediate mesoderm; together with other organs, the viscus constitutes the respiratory, gastrointestinal, urinary, reproductive and immune systems, or is the central organ of the cardiovascular system. Examples: heart, lung, esophagus, kidney, ovary, spleen. // An internal organ of the body; especially: one (as the heart, liver, or intestine) located in the great cavity of the trunk proper." [BTO:0001491, Wikipedia:Viscus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "viscera" RELATED [] synonym: "Viscus" EXACT [] xref: BTO:0001491 xref: FMA:7085 xref: XAO:0003034 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0002076 name: cuticle of hair alt_id: UBERON:FMA_70933-MA_0000157 comment: This class was created automatically from a combination of ontologies synonym: "Cuticle of hair" EXACT [] synonym: "Hair cuticle" EXACT [] synonym: "hair cuticle" EXACT [] xref: FMA:70933 xref: MA:0000157 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001037 ! hair [Term] id: UBERON:0002077 name: cortex of hair alt_id: UBERON:FMA_70934-MA_0000156 comment: This class was created automatically from a combination of ontologies synonym: "Cortex of hair" EXACT [] synonym: "Hair cortex" EXACT [] synonym: "hair cortex" EXACT [] xref: FMA:70934 xref: MA:0000156 is_a: UBERON:0001851 ! cortex intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0001037 ! hair relationship: part_of UBERON:0001037 ! hair [Term] id: UBERON:0002078 name: right atrium alt_id: UBERON:FMA_7096-MA_0000075 def: "Right cardiac chamber which is continuous with the superior vena cava and inferior vena cava." [Wikipedia:Right_atrium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "heart right atrium" EXACT [] synonym: "Right atrium" EXACT [] synonym: "Right atrium of heart" EXACT [] synonym: "right atrium of heart" EXACT [] xref: BTO:0001703 xref: FMA:7096 xref: HOG:0000328 xref: MA:0000075 xref: ncithesaurus:Right_Atrium xref: OpenCyc:Mx4runNcs6fqEdudWQACs5b6Bw is_a: UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0002079 name: left atrium alt_id: UBERON:FMA_7097-MA_0000074 def: "Left cardiac chamber which is continuous with the pulmonary venous trunk." [Wikipedia:Left_atrium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "heart left atrium" EXACT [] synonym: "Left atrium" EXACT [] synonym: "Left atrium of heart" EXACT [] synonym: "left atrium of heart" EXACT [] xref: BTO:0001702 xref: FMA:7097 xref: galen:LeftAtrium xref: HOG:0000369 xref: MA:0000074 xref: ncithesaurus:Left_Atrium xref: OpenCyc:Mx4rkJN1AagEEdudWQACs5b6Bw is_a: UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0002080 name: right ventricle alt_id: UBERON:FMA_7098-MA_0000093 def: "Right cardiac chamber which is continuous with the pulmonary arterial trunk." [Wikipedia:Right_ventricle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "heart right ventricle" EXACT [] synonym: "Right ventricle" EXACT [] synonym: "Right ventricle of heart" EXACT [] synonym: "right ventricle of heart" EXACT [] xref: BTO:0001630 xref: FMA:7098 xref: HOG:0000717 xref: MA:0000093 xref: ncithesaurus:Right_Ventricle xref: OpenCyc:Mx4rRMlc0KgNEdudWQACs5b6Bw is_a: UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0002081 name: cardiac atrium alt_id: UBERON:FMA_7099-MA_0000073 def: "Cardiac chamber which consists of a wall that surrounds the cavity of an atrium." [Wikipedia:Heart_atrium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Atrium of heart" EXACT [] synonym: "atrium of heart" EXACT [] synonym: "Cardiac atrium" EXACT [] synonym: "heart atrium" EXACT [] xref: EFO:0000314 xref: FMA:7099 xref: GAID:555 xref: HOG:0000175 xref: MA:0000073 xref: ncithesaurus:Cardiac_Atrium xref: TAO:0000471 xref: ZFA:0000471 is_a: UBERON:0001050 ! atrium intersection_of: UBERON:0001050 ! atrium intersection_of: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002082 name: cardiac ventricle alt_id: UBERON:FMA_7100-MA_0000091-ZFA_0000009 def: "Cardiac chamber which consists of a wall that surrounds the cavity of a ventricle. // One of four heart chambers." [Wikipedia:Cardiac_ventricle, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cardiac ventricle" EXACT [] synonym: "heart ventricle" EXACT [] synonym: "Lower chamber of heart" EXACT [] synonym: "lower chamber of heart" EXACT [] synonym: "ventricle" RELATED [] synonym: "Ventricle of heart" EXACT [] synonym: "ventricle of heart" EXACT [] xref: BTO:0000862 xref: FMA:7100 xref: GAID:568 xref: HOG:0000435 xref: MA:0000091 xref: ncithesaurus:Cardiac_Ventricle xref: OpenCyc:Mx4rvVjj1pwpEbGdrcN5Y29ycA xref: TAO:0000009 xref: ZFA:0000009 is_a: UBERON:0002300 ! ventricle intersection_of: UBERON:0002300 ! ventricle intersection_of: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002083 name: ductus venosus alt_id: UBERON:FMA_71007-MA_0002111 def: "." [Wikipedia:Ductus_venosus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ductus venosus" EXACT [] xref: EHDAA:5402 xref: FMA:71007 xref: HOG:0000924 xref: MA:0002111 xref: ncithesaurus:Ductus_Venosus is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0002084 name: left ventricle alt_id: UBERON:FMA_7101-MA_0000092 def: "Left cardiac chamber which is continuous with the aorta." [Wikipedia:Left_ventricle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "heart left ventricle" EXACT [] synonym: "Left ventricle" EXACT [] synonym: "Left ventricle of heart" EXACT [] synonym: "left ventricle of heart" EXACT [] xref: BTO:0001629 xref: FMA:7101 xref: galen:LeftVentricle xref: HOG:0000718 xref: MA:0000092 xref: ncithesaurus:Left_Ventricle xref: OpenCyc:Mx4rtW8v46gEEdudWQACs5b6Bw is_a: UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0002085 name: interatrial septum alt_id: UBERON:FMA_7108-MA_0000084 def: "Cardiac septum which separates the right atrium from the left atrium." [Wikipedia:Interatrial_septum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "atrial septum" EXACT [] synonym: "Interatrial septal wall" EXACT [] synonym: "interatrial septal wall" EXACT [] synonym: "Interatrial septum" EXACT [] xref: EHDAA:1896 xref: FMA:7108 xref: galen:InteratrialSeptum xref: HOG:0000385 xref: MA:0000084 xref: ncithesaurus:Interatrial_Septum xref: OpenCyc:Mx4rpd49nLYEEduAAAACs2IKfQ is_a: UBERON:0002099 ! cardiac septum [Term] id: UBERON:0002086 name: sinoatrial valve alt_id: UBERON:FMA_71120-ZFA_0000680 comment: This class was created automatically from a combination of ontologies synonym: "Sinoatrial valve" EXACT [] xref: FMA:71120 xref: TAO:0000680 xref: ZFA:0000680 is_a: UBERON:0000946 ! cardial valve is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0002062 ! endocardial cushion relationship: part_of UBERON:0002063 ! sinus venosus relationship: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0002087 name: atrioventricular canal alt_id: UBERON:FMA_71121-ZFA_0001315 def: "The part of the heart connecting the atrium to the cardiac ventricle[ZFA]. In the developing heart, the constriction between the atrium and ventricle constitutes the atrial canal, and indicates the site of the future atrioventricular valves[WP]." [Wikipedia:Atrioventricular_canal, ZFA:0001315] subset: uberon_slim synonym: "AV canal" EXACT [] xref: FMA:71121 xref: HOG:0001473 xref: TAO:0001315 xref: ZFA:0001315 is_a: UBERON:0002050 ! embryonic structure relationship: connects UBERON:0002081 ! cardiac atrium relationship: connects UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002088 name: lateral thoracic vein alt_id: UBERON:FMA_71210-MA_0002162 def: "." [Wikipedia:Lateral_thoracic_vein] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lateral thoracic vein" EXACT [] xref: FMA:71210 xref: MA:0002162 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002089 name: thoracodorsal vein alt_id: UBERON:FMA_71213-MA_0002238 comment: This class was created automatically from a combination of ontologies synonym: "Thoracodorsal vein" EXACT [] xref: FMA:71213 xref: MA:0002238 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002090 name: axial skeleton alt_id: UBERON:FMA_71221-MA_0000308-MIAA_0000148-XAO_0003073-ZFA_0000317 def: "*Subdivision of skeleton which consists of the bones of the vertebral column, the thoracic cage and the pelvis. // The post-cranial structural components forming the long axis of the vertebrate body; in Danio, consisting of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins." [Wikipedia:Axial_skeleton, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Axial skeleton" EXACT [] synonym: "postcranial axia skelton" RELATED [] synonym: "postcranial axial skeleton" EXACT [] synonym: "vertebral column" RELATED [] xref: AAO:0000034 xref: EHDAA:5049 xref: FMA:71221 xref: HOG:0000317 xref: MA:0000308 xref: MAT:0000148 xref: MIAA:0000148 xref: ncithesaurus:Axial_Skeleton xref: TAO:0000317 xref: XAO:0003073 xref: ZFA:0000317 is_a: UBERON:0000075 ! subdivision of skeleton relationship: develops_from UBERON:0003089 ! sclerotome [Term] id: UBERON:0002091 name: appendicular skeleton alt_id: UBERON:FMA_71222-MA_0000290-MIAA_0000278-ZFA_0000027 def: "*Subdivision of skeleton which consists of the bones of the upper and lower limbs." [Wikipedia:Appendicular_skeleton] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Appendicular skeleton" EXACT [] synonym: "paired fin skeleton" EXACT [] xref: AAO:0000747 xref: EFO:0000951 xref: FMA:71222 xref: MA:0000290 xref: MAT:0000278 xref: MIAA:0000278 xref: ncithesaurus:Appendicular_Skeleton xref: TAO:0000027 xref: XAO:0003166 xref: ZFA:0000027 is_a: UBERON:0000075 ! subdivision of skeleton intersection_of: UBERON:0000075 ! subdivision of skeleton intersection_of: has_part UBERON:0002428 ! limb bone [Term] id: UBERON:0002092 name: cranial dura mater alt_id: UBERON:FMA_71236-MA_0000815 comment: This class was created automatically from a combination of ontologies synonym: "brain dura mater" EXACT [] synonym: "Cranial dura mater" EXACT [] synonym: "Dura mater of brain" EXACT [] synonym: "dura mater of brain" EXACT [] xref: FMA:71236 xref: HOG:0000270 xref: MA:0000815 xref: ncithesaurus:Cerebral_Dura_Mater is_a: UBERON:0002363 ! dura mater is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx intersection_of: UBERON:0002363 ! dura mater intersection_of: part_of UBERON:0000955 ! brain [Term] id: UBERON:0002093 name: spinal dura mater alt_id: UBERON:FMA_71237-MA_0001132 comment: This class was created automatically from a combination of ontologies synonym: "Dura mater of spinal cord" EXACT [] synonym: "dura mater of spinal cord" EXACT [] synonym: "spinal cord dura mater" EXACT [] synonym: "Spinal dura mater" EXACT [] xref: FMA:71237 xref: HOG:0000411 xref: MA:0001132 xref: ncithesaurus:Spinal_Cord_Dura_Mater is_a: UBERON:0002363 ! dura mater is_a: UBERON:0003292 ! implied link automatically realized ! meninges of spinal cord intersection_of: UBERON:0002363 ! dura mater intersection_of: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002094 name: interventricular septum alt_id: UBERON:FMA_7133-MA_0000085 def: "Cardiac septum which separates the right ventricle from the left ventricle." [Wikipedia:Interventricular_septum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Interventricular septum" EXACT [] synonym: "ventricular septum" EXACT [] xref: BTO:0002483 xref: EFO:0001956 xref: EHDAA:2603 xref: FMA:7133 xref: galen:InterventricularSeptum xref: HOG:0000386 xref: MA:0000085 xref: ncithesaurus:Interventricular_Septum is_a: UBERON:0002099 ! cardiac septum [Term] id: UBERON:0002095 name: mesentery alt_id: UBERON:FMA_7144-XAO_0000138-ZFA_0005129 def: "Anatomical organ component composed of a double layer of serous membrane that suspends a viscus from the body wall or connects adjacent viscera and in doing so conveys blood vessels, lymphatics and nerves to and from the viscera. Examples: greater omentum, broad ligament of uterus, sigmoid mesocolon. // A double layer composed of peritoneum that attaches the visceral organs to the body wall." [Wikipedia:Mesentery, ZFIN:curator] comment: TODO - check. Consider FMA:259286 - Region of mesentery subset: uberon_slim synonym: "Mesentery" EXACT [] xref: BTO:0001380 xref: EHDAA:2943 xref: EHDAA:2999 xref: EHDAA:3017 xref: EHDAA:3031 xref: EHDAA:3838 xref: EHDAA:3919 xref: EHDAA:3932 xref: EHDAA:3945 xref: EHDAA:3955 xref: EHDAA:3969 xref: EHDAA:432 xref: FMA:7144 xref: GAID:21 xref: ncithesaurus:Mesentery xref: TAO:0005129 xref: XAO:0000138 xref: ZFA:0005129 is_a: UBERON:0000042 ! serous membrane relationship: part_of UBERON:0002358 ! peritoneum [Term] id: UBERON:0002096 name: lymphatic system alt_id: UBERON:FMA_7162-ZFA_0000385 def: "." [Wikipedia:Lymphatic_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lymphatic system" EXACT [] synonym: "Lymphatic tree system" EXACT [] synonym: "lymphatic tree system" EXACT [] xref: EFO:0000870 xref: EHDAA:8677 xref: FMA:7162 xref: GAID:931 xref: HOG:0000842 xref: MAT:0000197 xref: MIAA:0000197 xref: ncithesaurus:Lymphatic_System xref: TAO:0000385 xref: ZFA:0000385 is_a: UBERON:0001009 ! circulatory system [Term] id: UBERON:0002097 name: skin alt_id: UBERON:FMA_7163-MA_0000151-MIAA_0000284-XAO_0000023 def: "Nonparenchymatous organ that consists of the dermis and epidermis. Subdivisions of the skin surround various body parts; as a whole, the skin constitutes the external layer of the body. Examples: There is only one skin. // Surface structure that consists of the external membranous integument of the animal." [OMD:skin, Wikipedia:Skin] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "integument" RELATED [] synonym: "Skin" EXACT [] xref: BTO:0001253 xref: EFO:0000962 xref: EHDAA:6530 xref: FMA:7163 xref: GAID:933 xref: HOG:0000860 xref: MA:0000151 xref: MAT:0000284 xref: MIAA:0000284 xref: ncithesaurus:Skin xref: OpenCyc:Mx4rvVjX3ZwpEbGdrcN5Y29ycA xref: XAO:0000023 is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0002199 ! integument [Term] id: UBERON:0002098 name: apex of heart alt_id: UBERON:FMA_7164-MA_0000488 def: "." [Wikipedia:Apex_of_heart] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Apex of heart" EXACT [] synonym: "Cardiac apex" EXACT [] synonym: "cardiac apex" EXACT [] synonym: "heart apex" EXACT [] xref: FMA:7164 xref: MA:0000488 is_a: UBERON:0000015 ! anatomical boundary relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002099 name: cardiac septum alt_id: UBERON:FMA_7180-MA_0000083 def: "Septum of organ which has as its parts the membranous and muscular parts that separates the right side of the heart from the left side of the heart." [Wikipedia:Heart_septum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cardiac septum" EXACT [] synonym: "heart septum" EXACT [] synonym: "Septum of heart" EXACT [] synonym: "septum of heart" EXACT [] xref: FMA:7180 xref: GAID:562 xref: MA:0000083 xref: ncithesaurus:Heart_Septum is_a: UBERON:0003037 ! septum intersection_of: UBERON:0003037 ! septum intersection_of: part_of UBERON:0000948 ! heart relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002100 name: trunk alt_id: UBERON:FMA_7181-MIAA_0000296-XAO_0003025-ZFA_0001115 def: "Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the ribcage, thoracic and lumbar vertebral column, sacrum and coccyx, it is partially surrounded by skin of trunk. Examples: There is only one trunk. // Organism subdivision that is the part of the body posterior to the head and anterior to the tail. // Organism subdivision which is the part of the body posterior to the head and anterior to the tail." [Wikipedia:Torso, ZFA:0001115, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Torso" EXACT [] synonym: "torso" EXACT [] synonym: "Trunk" EXACT [] xref: BILA:0000116 xref: BTO:0001493 xref: EFO:0000966 xref: FMA:7181 xref: MA:0000004 xref: MAT:0000296 xref: MIAA:0000296 xref: ncithesaurus:Trunk xref: OpenCyc:Mx4rvVkJjpwpEbGdrcN5Y29ycA xref: TAO:0001115 xref: XAO:0003025 xref: ZFA:0001115 is_a: UBERON:0000475 ! organism subdivision relationship: has_part UBERON:0000915 ! thorax relationship: has_part UBERON:0000916 ! abdomen [Term] id: UBERON:0002101 name: limb alt_id: UBERON:FMA_7182-MA_0000007-MIAA_0000090-XAO_0003027 def: "A jointed or prehensible appendage used for locomotion or manipulation. Examples: human arm, human leg, octopus tentacle, insect limb[Wikipedia]. A limb is an appendage of an animal used for locomotion or grasping. For example a leg, arm or some types of fin[GO]." [GO:0035108, Wikipedia:Limb_(anatomy)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "extremity" RELATED [] synonym: "Limb" EXACT [] xref: BTO:0001492 xref: EFO:0000876 xref: EHDAA:1697 xref: EHDAA:8273 xref: FMA:7182 xref: GAID:36 xref: galen:Extremity xref: HOG:0000336 xref: MA:0000007 xref: MAT:0000090 xref: MIAA:0000090 xref: ncithesaurus:Limb xref: XAO:0003027 is_a: UBERON:0000026 ! appendage [Term] id: UBERON:0002102 name: forelimb alt_id: UBERON:FMA_7183-MA_0000025-MIAA_0000394-XAO_0003030 def: "anterior-most limb on a body." [BTO:0001729, ISBN:0471209627, Wikipedia:Forelimb] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "anteriormost limb" EXACT [] synonym: "Fore limb" EXACT [] synonym: "fore limb" EXACT [] synonym: "foreleg" RELATED [] synonym: "Forelimb" EXACT [] synonym: "forelimb" EXACT [] synonym: "Superior member" EXACT [] synonym: "superior member" EXACT [] synonym: "Upper extremity" EXACT [] synonym: "upper extremity" EXACT [] synonym: "Upper limb" EXACT [] synonym: "upper limb" RELATED [] xref: AAO:0000205 xref: BTO:0001729 xref: EFO:0000882 xref: EHDAA:6208 xref: FMA:7183 xref: GAID:1215 xref: GAID:51 xref: HOG:0000338 xref: MA:0000025 xref: MAT:0000394 xref: MIAA:0000394 xref: ncithesaurus:Upper_Extremity xref: XAO:0003030 is_a: UBERON:0002101 ! limb relationship: anterior_to UBERON:0002103 ! hindlimb [Term] id: UBERON:0002103 name: hindlimb alt_id: UBERON:FMA_7184-MA_0000026-MIAA_0000395-XAO_0003031 def: "A posterior limb on an animal." [ISBN:0471209627, Wikipedia:Lower_limb] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hind limb" EXACT [] synonym: "hind limb" EXACT [] synonym: "Hindlimb" EXACT [] synonym: "hindlimb" EXACT [] synonym: "Inferior member" EXACT [] synonym: "inferior member" EXACT [] synonym: "Lower extremity" EXACT [] synonym: "lower extremity" EXACT [] synonym: "Lower limb" EXACT [] synonym: "lower limb" RELATED [] xref: AAO:0000219 xref: BTO:0002345 xref: EFO:0000883 xref: EHDAA:6094 xref: FMA:7184 xref: GAID:1221 xref: GAID:38 xref: HOG:0000337 xref: MA:0000026 xref: MAT:0000395 xref: MIAA:0000395 xref: ncithesaurus:Lower_Extremity xref: XAO:0003031 is_a: UBERON:0002101 ! limb [Term] id: UBERON:0002104 name: visual system alt_id: UBERON:FMA_7191-MA_0002444-ZFA_0001127 def: "." [Wikipedia:Visual_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Visual organ system" EXACT [] synonym: "visual organ system" EXACT [] synonym: "Visual system" EXACT [] xref: AAO:0000632 xref: FMA:7191 xref: MA:0002444 xref: ncithesaurus:Visual_System xref: OpenCyc:Mx4rvViCtpwpEbGdrcN5Y29ycA xref: TAO:0001127 xref: ZFA:0001127 is_a: UBERON:0001032 ! sense organ system relationship: disconnected_from UBERON:0002105 ! auditory system [Term] id: UBERON:0002105 name: auditory system alt_id: UBERON:FMA_7192-MA_0002443 def: "A sensory system for the sense of hearing[WP]." [Wikipedia:Auditory_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Auditory organ system" EXACT [] synonym: "auditory organ system" EXACT [] synonym: "Auditory system" EXACT [] synonym: "auditory system" RELATED [] synonym: "auditory/vestibular system" RELATED [] synonym: "Vestibulo-auditory system" EXACT [] synonym: "vestibulo-auditory system" EXACT [] synonym: "vestibuloauditory system" EXACT [] synonym: "vestibuloauditory system" RELATED [] xref: AAO:0000631 xref: FMA:7192 xref: FMA:78500 xref: MA:0002443 xref: ncithesaurus:Auditory_System xref: OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA xref: TAO:0001138 xref: ZFA:0001138 is_a: UBERON:0001032 ! sense organ system [Term] id: UBERON:0002106 name: spleen alt_id: UBERON:FMA_7196-MA_0000141-MIAA_0000085-XAO_0000328-ZFA_0000436 def: "Organ found in virtually all vertebrate animals with important roles in regard to red blood cells and the immune system.[1] In humans, it is located in the left upper quadrant of the abdomen. It removes old red blood cells and holds a reserve in case of hemorrhagic shock, especially in animals like horses (not in humans), while recycling iron.[2] It synthesizes antibodies in its white pulp and removes, from blood and lymph node circulation, antibody-coated bacteria along with antibody-coated blood cells." [Wikipedia:Spleen] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Spleen" EXACT [] xref: BTO:0001281 xref: EFO:0000869 xref: FMA:7196 xref: GAID:1289 xref: HOG:0000120 xref: MA:0000141 xref: MAT:0000085 xref: MIAA:0000085 xref: ncithesaurus:Spleen xref: OpenCyc:Mx4rvVjgw5wpEbGdrcN5Y29ycA xref: TAO:0000436 xref: XAO:0000328 xref: ZFA:0000436 is_a: UBERON:0002075 ! viscus relationship: develops_from UBERON:0001048 ! primordium relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0001007 ! digestive system relationship: part_of UBERON:0002323 ! body cavity relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0002405 ! immune system [Term] id: UBERON:0002107 name: liver alt_id: UBERON:FMA_7197-MA_0000358-MIAA_0000097-XAO_0000133-ZFA_0000123 def: "Vascular, glandular internal organ that secretes bile and causes important changes in many of the substances contained in the blood. // Lobular organ the parenchyma of which consists of lobules which communicate with the biliary tree[FMA]" [BTO:0000759, Wikipedia:Liver] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Liver" EXACT [] xref: BTO:0000759 xref: EFO:0000887 xref: EHDAA:2197 xref: FMA:7197 xref: GAID:288 xref: HOG:0000257 xref: MA:0000358 xref: MAT:0000097 xref: MIAA:0000097 xref: ncithesaurus:Liver xref: OpenCyc:Mx4rvVimppwpEbGdrcN5Y29ycA xref: TAO:0000123 xref: XAO:0000133 xref: ZFA:0000123 is_a: UBERON:0002075 ! viscus relationship: develops_from UBERON:0000925 ! endoderm relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0002405 ! immune system relationship: part_of UBERON:0002423 ! hepatobiliary system [Term] id: UBERON:0002108 name: small intestine alt_id: UBERON:FMA_7200-MA_0000337-MIAA_0000047-XAO_0000130-ZFA_0001323 def: "Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine. Examples: There is only one small intestine. // The passage from the posterior intestine, from the rectal valve to the opening to the exterior. // The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005." [WA:dh, Wikipedia:Small_intestine, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "anterior intestine" RELATED [] synonym: "mid intestine" RELATED [] synonym: "Small bowel" EXACT [] synonym: "small bowel" EXACT [] synonym: "Small intestine" EXACT [] synonym: "small intestine" EXACT [] xref: BTO:0000651 xref: EFO:0000841 xref: FMA:7200 xref: GAID:313 xref: HOG:0000055 xref: MA:0000337 xref: MAT:0000047 xref: MIAA:0000047 xref: ncithesaurus:Small_Intestine xref: OpenCyc:Mx4rvVjlIJwpEbGdrcN5Y29ycA xref: TAO:0001323 xref: XAO:0000130 xref: ZFA:0001323 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001008 ! urinary system relationship: part_of UBERON:0001555 ! gut [Term] id: UBERON:0002109 name: set of nares alt_id: UBERON:FMA_72005-ZFA_0000550 def: "." [Wikipedia:Nares] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Nares" EXACT [] synonym: "nares" RELATED [] synonym: "Nares set" EXACT [] synonym: "nares set" EXACT [] synonym: "naris" EXACT [] synonym: "Nostrils" EXACT [] synonym: "nostrils" EXACT [] synonym: "Set of nares" EXACT [] xref: AAO:0000311 xref: EHDAA:9083 xref: FMA:72005 xref: HOG:0000663 xref: MA:0000282 xref: ncithesaurus:Nostril xref: OpenCyc:Mx4rvViCLpwpEbGdrcN5Y29ycA xref: TAO:0000550 xref: ZFA:0000550 is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0000004 ! olfactory apparatus [Term] id: UBERON:0002110 name: gallbladder alt_id: UBERON:FMA_7202-MA_0000356-MIAA_0000072-XAO_0000135-ZFA_0000208 def: "Organ with organ cavity which is continuous proximally with the cystic duct and distally terminates in the fundus of the gallbladder. Examples: There is only one gallbladder." [Wikipedia:Gallbladder] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Gall bladder" EXACT [] synonym: "gall bladder" EXACT [] synonym: "Gallbladder" EXACT [] xref: BTO:0000493 xref: EFO:0000853 xref: EHDAA:8062 xref: FMA:7202 xref: galen:Gallbladder xref: HOG:0000221 xref: MA:0000356 xref: MAT:0000072 xref: MIAA:0000072 xref: ncithesaurus:Gallbladder xref: OpenCyc:Mx4rvVkGr5wpEbGdrcN5Y29ycA xref: TAO:0000208 xref: XAO:0000135 xref: ZFA:0000208 is_a: UBERON:0002075 ! viscus relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0002294 ! biliary system relationship: part_of UBERON:0002323 ! body cavity [Term] id: UBERON:0002111 name: smooth muscle of artery alt_id: UBERON:FMA_72024-MA_0000708 comment: This class was created automatically from a combination of ontologies synonym: "artery smooth muscle" EXACT [] synonym: "Smooth muscle of artery" EXACT [] xref: BTO:0000087 xref: FMA:72024 xref: MA:0000708 is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001637 ! artery relationship: part_of UBERON:0001637 ! artery [Term] id: UBERON:0002112 name: smooth muscle of esophagus alt_id: UBERON:FMA_72025-MA_0001573 comment: This class was created automatically from a combination of ontologies synonym: "esophagus smooth muscle" EXACT [] synonym: "oesophagus smooth muscle" RELATED [] synonym: "Smooth muscle of esophagus" EXACT [] xref: FMA:72025 xref: MA:0001573 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0002113 name: kidney alt_id: UBERON:FMA_7204-MA_0001683 alt_id: UBERON:FMA_7205-MA_0001655 def: "A paired organ which has the production of urine as its primary function." [Wikipedia:Kidney] subset: uberon_slim synonym: "Kidney" EXACT [] synonym: "kidney" EXACT [] synonym: "Left kidney" EXACT [] synonym: "left kidney" EXACT [] synonym: "Right kidney" EXACT [] synonym: "right kidney" EXACT [] xref: AAO:0000250 xref: BTO:0000671 xref: EFO:0000929 xref: FMA:7203 xref: GAID:423 xref: galen:Kidney xref: MA:0000368 xref: MAT:0000119 xref: MIAA:0000118 xref: MIAA:0000119 xref: ncithesaurus:Kidney xref: OpenCyc:Mx4rvVjlYpwpEbGdrcN5Y29ycA xref: TAO:0000529 is_a: UBERON:0000489 ! cavitated compound organ relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0001008 ! urinary system [Term] id: UBERON:0002114 name: duodenum alt_id: UBERON:FMA_7206-MA_0000338-MIAA_0000044-XAO_0000236 def: "The first part of the small intestine. At the junction of the stomach and the duodenum the alimentary canal is inflected. The duodenum first goes anteriorly for a short distance, turns dorsally, and eventually caudally, thus it is a U-shaped structure with two horizontal sections (a ventral and a dorsal one)." [ISBN:0815318960, Wikipedia:Duodenum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Duodenum" EXACT [] xref: BTO:0000365 xref: EFO:0000851 xref: EHDAA:3830 xref: EHDAA:3937 xref: FMA:7206 xref: GAID:284 xref: galen:Duodenum xref: HOG:0000052 xref: MA:0000338 xref: MAT:0000044 xref: MIAA:0000044 xref: ncithesaurus:Duodenum xref: OpenCyc:Mx4rv4LJDpwpEbGdrcN5Y29ycA xref: XAO:0000236 is_a: UBERON:0002108 ! small intestine relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0002115 name: jejunum alt_id: UBERON:FMA_7207-MA_0000340-MIAA_0000045 def: "." [Wikipedia:Jejunum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Jejunum" EXACT [] xref: BTO:0000657 xref: EFO:0001333 xref: FMA:7207 xref: GAID:318 xref: galen:Jejunum xref: HOG:0000053 xref: MA:0000340 xref: MAT:0000045 xref: MIAA:0000045 xref: ncithesaurus:Jejunum is_a: UBERON:0002108 ! small intestine [Term] id: UBERON:0002116 name: ileum alt_id: UBERON:FMA_7208-MA_0000339-MIAA_0000282-XAO_0000237 def: "." [Wikipedia:Ileum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ileum" EXACT [] xref: BTO:0000620 xref: EFO:0001334 xref: FMA:7208 xref: GAID:315 xref: galen:Ileum xref: HOG:0000647 xref: MA:0000339 xref: MAT:0000282 xref: MIAA:0000282 xref: ncithesaurus:Ileum xref: OpenCyc:Mx4rvdcLHZwpEbGdrcN5Y29ycA xref: XAO:0000237 is_a: UBERON:0002108 ! small intestine relationship: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0002117 name: testicle alt_id: UBERON:FMA_7211-MA_0001747 alt_id: UBERON:FMA_7212-MA_0001746 def: "." [Wikipedia:Testicle] comment: TODO: add subtypes, L/R subset: uberon_slim synonym: "Left testicle" EXACT [] synonym: "left testicle" EXACT [] synonym: "Left testis" EXACT [] synonym: "left testis" EXACT [] synonym: "Right testicle" EXACT [] synonym: "right testicle" EXACT [] synonym: "Right testis" EXACT [] synonym: "right testis" EXACT [] xref: EFO:0000984 xref: FMA:7211 xref: FMA:7212 xref: MA:0001746 xref: MA:0001747 xref: ncithesaurus:Left_Testis xref: OpenCyc:Mx4rvVjM25wpEbGdrcN5Y29ycA is_a: UBERON:0000473 ! testis relationship: part_of UBERON:0000473 ! testis [Term] id: UBERON:0002118 name: right ovary alt_id: UBERON:FMA_7213-MA_0001705 comment: This class was created automatically from a combination of ontologies synonym: "Right ovary" EXACT [] xref: FMA:7213 xref: MA:0001705 xref: ncithesaurus:Right_Ovary is_a: UBERON:0000992 ! ovary [Term] id: UBERON:0002119 name: left ovary alt_id: UBERON:FMA_7214-MA_0001704 comment: This class was created automatically from a combination of ontologies synonym: "Left ovary" EXACT [] xref: FMA:7214 xref: MA:0001704 xref: ncithesaurus:Left_Ovary is_a: UBERON:0000992 ! ovary [Term] id: UBERON:0002120 name: pronephros alt_id: UBERON:FMA_72170-MIAA_0000117-XAO_0002000-ZFA_0000151 def: "In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensible for larval life[GO]. // The first kidney in all vertebrates - it is transitional and disappears soon after it has formed. // Organ that serves as a transient kidney, providing osmoregulation during early developmental stages and then degenerating during metamorphosis. // The embryonic kidney, present at the level of the third somite, is composed of two glomeruli fused at the midline, two pronephric tubules, and paired bilateral pronephric ducts that modify the composition of the blood filtrate before delivering it to the cloaca for excretion.Kimmel et al, 1995." [GO:0048793, Wikipedia:Pronephros, XB:curator, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "embryonic kidney" RELATED [] synonym: "pronephric kidney" EXACT [] synonym: "Pronephros" EXACT [] xref: BTO:0001541 xref: EFO:0000927 xref: EHDAA:1017 xref: FMA:72170 xref: HOG:0000037 xref: MAT:0000117 xref: MIAA:0000117 xref: ncithesaurus:Pronephros xref: TAO:0000151 xref: XAO:0002000 xref: ZFA:0000151 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002113 ! kidney relationship: develops_from UBERON:0003104 ! mesenchyme relationship: part_of UBERON:0002323 ! body cavity [Term] id: UBERON:0002122 name: capsule of thymus alt_id: UBERON:FMA_72204-MA_0000766 comment: This class was created automatically from a combination of ontologies synonym: "Capsule of thymus" EXACT [] synonym: "Thymus capsule" EXACT [] synonym: "thymus capsule" EXACT [] xref: FMA:72204 xref: MA:0000766 is_a: UBERON:0003893 ! capsule intersection_of: UBERON:0003893 ! capsule intersection_of: surrounds UBERON:0002370 ! thymus relationship: surrounds UBERON:0002370 ! thymus [Term] id: UBERON:0002123 name: cortex of thymus alt_id: UBERON:FMA_72205-MA_0000767 def: "Cortical portion of thymus, mainly composed of lymphoid cells, supported by a network of finely-branched epithelial reticular cells, which is continuous with a similar network in the medullary portion. This network forms an adventitia to the blood vessels. The cortex is the location of the earliest events in thymocyte development, where T cell receptor gene rearrangement and positive selection takes place." [Wikipedia:Thymus#Cortex] comment: This class was created automatically from a combination of ontologies synonym: "Cortex of thymus" EXACT [] synonym: "Thymus cortex" EXACT [] synonym: "thymus cortex" EXACT [] xref: FMA:72205 xref: MA:0000767 xref: ncithesaurus:Thymus_Cortex is_a: UBERON:0001851 ! cortex intersection_of: UBERON:0001851 ! cortex intersection_of: part_of UBERON:0002370 ! thymus relationship: part_of UBERON:0002370 ! thymus [Term] id: UBERON:0002124 name: medulla of thymus alt_id: UBERON:FMA_72206-MA_0000771 def: "Medullary portion of thymus. The reticulum is coarser than in the cortex, the lymphoid cells are relatively fewer in number, and there are found peculiar nest-like bodies, the concentric corpuscles of Hassall. These concentric corpuscles are composed of a central mass, consisting of one or more granular cells, and of a capsule formed of epithelioid cells. They are the remains of the epithelial tubes, which grow out from the third branchial pouches of the embryo to form the thymus. Each follicle is surrounded by a vascular plexus, from which vessels pass into the interior, and radiate from the periphery toward the center, forming a second zone just within the margin of the medullary portion. In the center of the medullary portion there are very few vessels, and they are of minute size." [Wikipedia:Thymus#Medulla] comment: This class was created automatically from a combination of ontologies synonym: "Medulla of thymus" EXACT [] synonym: "Thymus medulla" EXACT [] synonym: "thymus medulla" EXACT [] xref: EFO:0001969 xref: FMA:72206 xref: MA:0000771 xref: ncithesaurus:Thymus_Medulla is_a: UBERON:0000958 ! medulla intersection_of: UBERON:0000958 ! medulla intersection_of: part_of UBERON:0002370 ! thymus relationship: part_of UBERON:0002370 ! thymus [Term] id: UBERON:0002125 name: lobule of thymus alt_id: UBERON:FMA_72215-MA_0000770 comment: This class was created automatically from a combination of ontologies synonym: "Lobule of thymus" EXACT [] synonym: "Thymus lobule" EXACT [] synonym: "thymus lobule" EXACT [] xref: FMA:72215 xref: MA:0000770 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002370 ! thymus [Term] id: UBERON:0002126 name: solitary tract nuclear complex alt_id: UBERON:FMA_72242-MA_0001052 def: "." [Wikipedia:Nucleus_of_tractus_solitarius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Nuclei of solitary tract" EXACT [] synonym: "nuclei of solitary tract" EXACT [] synonym: "Nucleus of tractus solitarius" EXACT [] synonym: "nucleus of tractus solitarius" EXACT [] synonym: "Solitary nuclei" EXACT [] synonym: "solitary nuclei" EXACT [] synonym: "solitary nucleus" EXACT [] synonym: "Solitary tract nuclear complex" EXACT [] synonym: "solitary tract nucleus" EXACT [] xref: FMA:72242 xref: GAID:593 xref: MA:0001052 xref: ncithesaurus:Solitary_Nucleus xref: NIF_GrossAnatomy:birnlex_1429 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002127 name: inferior olivary complex alt_id: UBERON:FMA_72243-MA_0001040-ZFA_0000215 def: "largest nucleus situated in the olivary body, part of the medulla oblongata. It is closely associated with the cerebellum, but its specific function is voluntary body movements." [Wikipedia:Inferior_olivary_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Inferior olivary complex" EXACT [] synonym: "inferior olivary nuclear complex" EXACT [] synonym: "Inferior olivary nucleus" EXACT [] synonym: "inferior olivary nucleus" EXACT [] synonym: "Inferior olive" EXACT [] synonym: "inferior olive" EXACT [] xref: BTO:0002298 xref: FMA:72243 xref: MA:0001040 xref: NIF_GrossAnatomy:birnlex_1164 xref: TAO:0000215 xref: ZFA:0000215 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata relationship: part_of UBERON:0000128 ! olivary body [Term] id: UBERON:0002128 name: superior olivary complex alt_id: UBERON:FMA_72247-MA_0001026 def: "The superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound[GO]." [Wikipedia:Superior_olivary_complex] comment: GO -- In mice, the superior olivary nucleus is a small cylindrical mass on the dorsal surface of the lateral part of the trapezoid body of the pons, and it is situated immediately above the inferior olivary nucleus. It receives projections from the cochlear nucleus and thus is involved in the perception of sound. -- TODO fix GO def to be the same throughout subset: uberon_slim synonym: "superior olivary nuclei" EXACT [] synonym: "superior olivary nucleus" EXACT [] synonym: "superior olive" RELATED [] xref: FMA:72247 xref: MA:0001026 xref: NIF_GrossAnatomy:birnlex_1307 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002129 name: cerebellar cortex alt_id: UBERON:FMA_72248-MA_0000199 def: "The cerebellar cortex is a thin mantle of gray matter that covers the surface of each cerebral hemisphere. It has a characteristic morphology with convolutions (gyri) and crevices (sulci) that have specific functions. Six layers of nerve cells and the nerve pathways that connect them comprise the cerebellar cortex. Together, these regions are responsible for the processes of conscious thought, perception, emotion and memory as well as advanced motor function[GO]." [Wikipedia:Cerebellar_cortex] comment: The circuits in the cerebellar cortex look similar across all classes of vertebrates, including fish, reptiles, birds, and mammals (e.g., Fig. 2). This has been taken as evidence that the cerebellum performs functions important to all vertebrate species. (Wikipedia) subset: uberon_slim synonym: "Cerebellar cortex" EXACT [] xref: BTO:0000043 xref: FMA:72248 xref: GAID:596 xref: MA:0000199 xref: ncithesaurus:Cerebellar_Cortex xref: NIF_GrossAnatomy:birnlex_1566 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002130 name: cerebellar nuclear complex alt_id: UBERON:FMA_72249-MA_0000203 def: "." [Wikipedia:Cerebellar_nuclei] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Central nuclei" EXACT [] synonym: "central nuclei" EXACT [] synonym: "Cerebellar nuclear complex" EXACT [] synonym: "Cerebellar nuclei" EXACT [] synonym: "cerebellar nuclei" EXACT [] synonym: "Deep cerebellar nuclei" EXACT [] synonym: "deep cerebellar nuclei" EXACT [] synonym: "deep cerebellar nucleus" EXACT [] synonym: "Intracerebellar nuclei" EXACT [] synonym: "intracerebellar nuclei" EXACT [] synonym: "Intrinsic nuclei of cerebellum" EXACT [] synonym: "intrinsic nuclei of cerebellum" EXACT [] synonym: "Roof nuclei-2" EXACT [] synonym: "roof nuclei-2" EXACT [] xref: FMA:72249 xref: GAID:599 xref: MA:0000203 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002131 name: anterior lobe of cerebellum alt_id: UBERON:FMA_72251-MA_0000991 def: "." [Wikipedia:Anterior_lobe_of_cerebellum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anterior cerebellar lobe" EXACT [] synonym: "anterior cerebellar lobe" EXACT [] synonym: "Anterior lobe of cerebellum" EXACT [] synonym: "cerebellum anterior lobe" EXACT [] xref: FMA:72251 xref: MA:0000991 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex relationship: part_of UBERON:0002245 ! hemisphere of cerebellum [Term] id: UBERON:0002132 name: dentate nucleus alt_id: UBERON:FMA_72260-MA_0001008 def: "." [Wikipedia:Dentate_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Dentate nucleus" EXACT [] synonym: "lateral cerebellar nucleus" EXACT [] synonym: "Lateral nucleus of cerebellum" EXACT [] synonym: "lateral nucleus of cerebellum" EXACT [] xref: FMA:72260 xref: MA:0001008 xref: NIF_GrossAnatomy:birnlex_1171 is_a: UBERON:0002130 ! cerebellar nuclear complex is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002130 ! cerebellar nuclear complex [Term] id: UBERON:0002133 name: atrioventricular valve alt_id: UBERON:FMA_7233-ZFA_0005064 def: "Cardiac valve which has as its parts the leaf of cardiac valve that separates the atrium from the ventricle. // The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. Hu et al. 2001." [Wikipedia:Heart_valve#Atrioventricular_valves, ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "AV valve" EXACT [] xref: EHDAA:7421 xref: FMA:7233 xref: galen:AtrioventricularValve xref: HOG:0001472 xref: MA:0002789 xref: OpenCyc:Mx4rfCfdorrpEduAAAACs6hRXg xref: TAO:0005064 xref: ZFA:0005064 is_a: UBERON:0000946 ! cardial valve relationship: connects UBERON:0002081 ! cardiac atrium relationship: connects UBERON:0002082 ! cardiac ventricle relationship: develops_from UBERON:0002062 ! endocardial cushion [Term] id: UBERON:0002134 name: tricuspid valve alt_id: UBERON:FMA_7234-MA_0000090 def: "Atrioventricular valve which has as its parts the anterior, posterior and septal leaflets, attached to the fibrous ring of tricuspid valve." [Wikipedia:Tricuspid_valve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Right atrioventricular valve" EXACT [] synonym: "right atrioventricular valve" EXACT [] synonym: "Tricuspid valve" EXACT [] xref: EHDAA:7427 xref: FMA:7234 xref: GAID:567 xref: HOG:0000816 xref: MA:0000090 xref: ncithesaurus:Tricuspid_Valve is_a: UBERON:0002133 ! atrioventricular valve [Term] id: UBERON:0002135 name: mitral valve alt_id: UBERON:FMA_7235-MA_0000088 def: "Atrioventricular valve which has as its parts the anterior and posterior leaflets, attached to the fibrous ring of mitral valve." [Wikipedia:Mitral_valve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bicuspid valve" EXACT [] synonym: "bicuspid valve" RELATED [] synonym: "Left atrioventricular valve" EXACT [] synonym: "left atrioventricular valve" EXACT [] synonym: "Mitral valve" EXACT [] xref: FMA:7235 xref: GAID:565 xref: HOG:0000817 xref: MA:0000088 xref: ncithesaurus:Mitral_Valve xref: OpenCyc:Mx4rv4l2nJwpEbGdrcN5Y29ycA is_a: UBERON:0002133 ! atrioventricular valve [Term] id: UBERON:0002136 name: hilus of dentate gyrus alt_id: UBERON:FMA_72358-MA_0000947 comment: This class was created automatically from a combination of ontologies synonym: "Dentate gyrus hilus" EXACT [] synonym: "dentate gyrus hilus" EXACT [] synonym: "Field CA4 of hippocampal formation" EXACT [] synonym: "field ca4 of hippocampal formation" EXACT [] synonym: "Hilus of dentate gyrus" EXACT [] xref: FMA:72358 xref: MA:0000947 xref: NIF_GrossAnatomy:birnlex_1482 is_a: UBERON:0002744 ! hilum of dentate nucleus is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter is_a: UBERON:0003876 ! implied link automatically realized ! hippocampal region relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation [Term] id: UBERON:0002137 name: aortic valve alt_id: UBERON:FMA_7236-MA_0000087 def: "Cardiac valve which has as its parts the anterior, right posterior and left posterior cusps, attached to the fibrous ring of aortic valve." [Wikipedia:Aortic_valve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Aortic valve" EXACT [] xref: EHDAA:4410 xref: FMA:7236 xref: GAID:563 xref: galen:AorticValve xref: HOG:0000815 xref: MA:0000087 xref: ncithesaurus:Aortic_Valve xref: OpenCyc:Mx4rv5914JwpEbGdrcN5Y29ycA is_a: UBERON:0000946 ! cardial valve [Term] id: UBERON:0002138 name: habenulo-interpeduncular tract alt_id: UBERON:FMA_72400-ZFA_0000353 comment: This class was created automatically from a combination of ontologies synonym: "fasciculus retroflexus" EXACT [] synonym: "Habenulo-interpeduncular tract" EXACT [] synonym: "Habenulointerpeduncular fasciculus" EXACT [] synonym: "habenulointerpeduncular fasciculus" EXACT [] synonym: "Habenulointerpeduncular tract" EXACT [] synonym: "habenulointerpeduncular tract" RELATED [] synonym: "Habenulopeduncular tract" EXACT [] synonym: "habenulopeduncular tract" EXACT [] synonym: "Meynert's retroflex bundle" EXACT [] synonym: "meynert's retroflex bundle" EXACT [] xref: FMA:72400 xref: NIF_GrossAnatomy:birnlex_1504 xref: TAO:0000353 xref: ZFA:0000353 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0002139 name: subcommissural organ alt_id: UBERON:FMA_72414-ZFA_0000683 def: "." [Wikipedia:Subcommissural_organ] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "SCO" RELATED [] synonym: "Subcommissural organ" EXACT [] xref: BTO:0001820 xref: FMA:72414 xref: GAID:794 xref: NIF_GrossAnatomy:birnlex_1028 xref: TAO:0000683 xref: ZFA:0000683 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002140 name: parabigeminal nucleus alt_id: UBERON:FMA_72415-MA_0001074 comment: This class was created automatically from a combination of ontologies synonym: "Parabigeminal nucleus" EXACT [] xref: FMA:72415 xref: MA:0001074 xref: NIF_GrossAnatomy:birnlex_1007 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002141 name: parvocellular oculomotor nucleus alt_id: UBERON:FMA_72424-MA_0001071 def: "." [Wikipedia:Edinger-westphal_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Accessory oculomotor nucleus" EXACT [] synonym: "accessory oculomotor nucleus" EXACT [] synonym: "edinger-westphal nucleus" EXACT [] synonym: "Oculomotor nucleus, parvocellular part" EXACT [] synonym: "oculomotor nucleus, parvocellular part" EXACT [] synonym: "Parvocellular oculomotor nucleus" EXACT [] xref: FMA:72424 xref: MA:0001071 xref: NIF_GrossAnatomy:birnlex_822 xref: ZFA:0000244 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002142 name: pedunculopontine tegmental nucleus alt_id: UBERON:FMA_72429-MA_0001020 def: "." [Wikipedia:Pedunculopontine_tegmental_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Peduncular pontine nucleus" EXACT [] synonym: "peduncular pontine nucleus" EXACT [] synonym: "Pedunculopontine nucleus" EXACT [] synonym: "pedunculopontine nucleus" EXACT [] synonym: "Pedunculopontine tegmental nucleus" EXACT [] xref: FMA:72429 xref: MA:0001020 xref: NIF_GrossAnatomy:birnlex_1437 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon relationship: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0002275 ! reticular formation [Term] id: UBERON:0002143 name: dorsal tegmental nucleus alt_id: UBERON:FMA_72434-ZFA_0000346 comment: This class was created automatically from a combination of ontologies synonym: "Dorsal tegmental nucleus" EXACT [] synonym: "Dorsal tegmental nucleus (Gudden)" EXACT [] synonym: "dorsal tegmental nucleus (gudden)" EXACT [] synonym: "Gudden nucleus" EXACT [] synonym: "gudden nucleus" EXACT [] synonym: "Posterior tegmental nucleus" EXACT [] synonym: "posterior tegmental nucleus" EXACT [] synonym: "von Gudden's nucleus" EXACT [] synonym: "von gudden's nucleus" EXACT [] xref: FMA:72434 xref: MA:0001013 xref: NIF_GrossAnatomy:birnlex_992 xref: TAO:0000346 xref: ZFA:0000346 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002144 name: peripeduncular nucleus alt_id: UBERON:FMA_72437-MA_0000875 comment: This class was created automatically from a combination of ontologies synonym: "Peripeduncular nucleus" EXACT [] synonym: "Peripeduncular nucleus of pons" EXACT [] synonym: "peripeduncular nucleus of pons" EXACT [] xref: FMA:72437 xref: MA:0000875 xref: NIF_GrossAnatomy:birnlex_1474 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain relationship: part_of UBERON:0001900 ! subthalamus relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002145 name: interpeduncular nucleus alt_id: UBERON:FMA_72439-MA_0001069 comment: This class was created automatically from a combination of ontologies synonym: "Interpeduncular ganglion" EXACT [] synonym: "interpeduncular ganglion" EXACT [] synonym: "Interpeduncular nucleus" EXACT [] xref: FMA:72439 xref: MA:0001069 xref: NIF_GrossAnatomy:birnlex_1000 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002146 name: pulmonary valve alt_id: UBERON:FMA_7246-MA_0000089 def: "Cardiac valve which has as its parts the right anterior, left anterior and posterior cusps, attached to the fibrous ring of pulmonary valve." [Wikipedia:Pulmonary_valve] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pulmonary valve" EXACT [] synonym: "Pulmonic valve" EXACT [] synonym: "pulmonic valve" EXACT [] xref: EHDAA:4412 xref: FMA:7246 xref: GAID:566 xref: HOG:0000814 xref: MA:0000089 xref: ncithesaurus:Pulmonary_Valve is_a: UBERON:0000946 ! cardial valve [Term] id: UBERON:0002147 name: reticulotegmental nucleus alt_id: UBERON:FMA_72471-MA_0001025 comment: This class was created automatically from a combination of ontologies synonym: "reticular tegmental nucleus" EXACT [] synonym: "Reticulotegmental nucleus" EXACT [] synonym: "Reticulotegmental nucleus of pons" EXACT [] synonym: "reticulotegmental nucleus of pons" EXACT [] synonym: "Tegmental reticular nucleus, pontine gray" EXACT [] synonym: "tegmental reticular nucleus, pontine gray" EXACT [] xref: FMA:72471 xref: MA:0001025 xref: NIF_GrossAnatomy:birnlex_882 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon relationship: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0002275 ! reticular formation [Term] id: UBERON:0002148 name: locus ceruleus alt_id: UBERON:FMA_72478-MA_0001017-ZFA_0000539 def: "The locus ceruleus is a dense cluster of neurons within the dorsorostral pons. This nucleus is the major location of neurons that release norepinephrine throughout the brain, and is responsible for physiological responses to stress and panic[GO]." [Wikipedia:Locus_ceruleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "caerulean nucleus" EXACT [] synonym: "locus coeruleus" EXACT [] synonym: "nucleus of locus caeruleus" EXACT [] xref: BTO:0001408 xref: EFO:0001963 xref: FMA:72478 xref: GAID:577 xref: MA:0001017 xref: NIF_GrossAnatomy:birnlex_905 xref: TAO:0000539 xref: ZFA:0000539 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002149 name: superior salivatory nucleus alt_id: UBERON:FMA_72482-MA_0001027 def: "visceromotor cranial nerve nucleus located in the pontine tegmentum." [Wikipedia:Superior_salivatory_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "superior salivary nucleus" EXACT [] synonym: "Superior salivatory nucleus" EXACT [] xref: FMA:72482 xref: MA:0001027 xref: NIF_GrossAnatomy:birnlex_1131 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002150 name: superior cerebellar peduncle alt_id: UBERON:FMA_72495-MA_0002746 def: "." [Wikipedia:Superior_cerebellar_peduncle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Superior cerebellar peduncle" EXACT [] xref: FMA:72495 xref: MA:0002746 xref: NIF_GrossAnatomy:birnlex_1711 is_a: UBERON:0002474 ! cerebellar peduncle is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:0002151 name: pontine nuclear group alt_id: UBERON:FMA_72512-MA_0001021 def: "." [Wikipedia:Pontine_nuclei] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pontine nuclear group" EXACT [] synonym: "Pontine nuclei" EXACT [] synonym: "pontine nuclei" EXACT [] synonym: "pontine nucleus" EXACT [] xref: BTO:0003396 xref: FMA:72512 xref: MA:0001021 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002152 name: middle cerebellar peduncle alt_id: UBERON:FMA_72515-MA_0002745 def: "." [Wikipedia:Middle_cerebellar_peduncle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Middle cerebellar peduncle" EXACT [] xref: FMA:72515 xref: MA:0002745 xref: NIF_GrossAnatomy:birnlex_1529 xref: NIF_GrossAnatomy:birnlex_1699 is_a: UBERON:0002474 ! cerebellar peduncle is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:0002153 name: fastigial nucleus alt_id: UBERON:FMA_72537-MA_0001009 def: "." [Wikipedia:Fastigial_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Fastigial nucleus" EXACT [] synonym: "Medial (fastigial) nucleus" EXACT [] synonym: "medial (fastigial) nucleus" EXACT [] synonym: "medial cerebellar nucleus" EXACT [] synonym: "Roof nucleus-1" EXACT [] synonym: "roof nucleus-1" EXACT [] xref: FMA:72537 xref: MA:0001009 xref: NIF_GrossAnatomy:birnlex_1146 is_a: UBERON:0002130 ! cerebellar nuclear complex is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0002130 ! cerebellar nuclear complex [Term] id: UBERON:0002154 name: lateral reticular nucleus alt_id: UBERON:FMA_72574-MA_0001047-ZFA_0000535 def: "." [Wikipedia:Lateral_reticular_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lateral reticular nucleus" EXACT [] synonym: "Lateral reticular nucleus (medulla)" EXACT [] synonym: "lateral reticular nucleus (medulla)" EXACT [] xref: FMA:72574 xref: MA:0001047 xref: TAO:0000535 xref: ZFA:0000535 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002155 name: gigantocellular nucleus alt_id: UBERON:FMA_72576-MA_0001037 def: "." [Wikipedia:Gigantocellular_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Gigantocellular nucleus" EXACT [] synonym: "Gigantocellular reticular nucleus" EXACT [] synonym: "gigantocellular reticular nucleus" EXACT [] xref: FMA:72576 xref: MA:0001037 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002156 name: nucleus raphe magnus alt_id: UBERON:FMA_72584-MA_0001024 def: "." [Wikipedia:Nucleus_raphe_magnus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Magnus raphe nucleus" EXACT [] synonym: "magnus raphe nucleus" EXACT [] synonym: "Nucleus raphe magnus" EXACT [] synonym: "Raphe magnus nucleus" EXACT [] synonym: "raphe magnus nucleus" EXACT [] xref: FMA:72584 xref: MA:0001024 xref: NIF_GrossAnatomy:birnlex_1363 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002157 name: nucleus raphe pallidus alt_id: UBERON:FMA_72586-MA_0001051 def: "." [Wikipedia:Nucleus_raphe_pallidus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Nucleus raphe pallidus" EXACT [] synonym: "Pallidal raphe nucleus" EXACT [] synonym: "pallidal raphe nucleus" EXACT [] synonym: "Raphe pallidus nucleus" EXACT [] synonym: "raphe pallidus nucleus" EXACT [] xref: FMA:72586 xref: MA:0001051 xref: NIF_GrossAnatomy:birnlex_1375 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002158 name: principal inferior olivary nucleus alt_id: UBERON:FMA_72592-MA_0001046 comment: This class was created automatically from a combination of ontologies synonym: "Chief inferior olivary nucleus" EXACT [] synonym: "chief inferior olivary nucleus" EXACT [] synonym: "Inferior olivary complex, principal olive" EXACT [] synonym: "inferior olivary complex, principal olive" EXACT [] synonym: "inferior olive principal nucleus" EXACT [] synonym: "Inferior olive, principal nucleus" EXACT [] synonym: "inferior olive, principal nucleus" EXACT [] synonym: "Main olivary nucleus" EXACT [] synonym: "main olivary nucleus" EXACT [] synonym: "Principal inferior olivary nucleus" EXACT [] synonym: "Principal nucleus of inferior olive" EXACT [] synonym: "principal nucleus of inferior olive" EXACT [] synonym: "Principal olivary nucleus" EXACT [] synonym: "principal olivary nucleus" EXACT [] xref: FMA:72592 xref: MA:0001046 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002574 ! implied link automatically realized ! regional part of inferior olivary complex relationship: part_of UBERON:0002127 ! inferior olivary complex [Term] id: UBERON:0002159 name: medial accessory inferior olivary nucleus alt_id: UBERON:FMA_72594-MA_0001045 comment: This class was created automatically from a combination of ontologies synonym: "Inferior olivary complex, medial accessory olive" EXACT [] synonym: "inferior olivary complex, medial accessory olive" EXACT [] synonym: "inferior olive medial nucleus" EXACT [] synonym: "Inferior olive, medial nucleus" EXACT [] synonym: "inferior olive, medial nucleus" EXACT [] synonym: "Medial accessory inferior olivary nucleus" EXACT [] synonym: "Medial accessory olivary nucleus" EXACT [] synonym: "medial accessory olivary nucleus" EXACT [] xref: FMA:72594 xref: MA:0001045 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002574 ! implied link automatically realized ! regional part of inferior olivary complex relationship: part_of UBERON:0002127 ! inferior olivary complex [Term] id: UBERON:0002160 name: nucleus prepositus alt_id: UBERON:FMA_72596-MA_0001023 comment: This class was created automatically from a combination of ontologies synonym: "Nucleus prepositus" EXACT [] synonym: "nucleus prepositus hypoglossus" RELATED [] synonym: "Prepositus hypoglossal nucleus" EXACT [] synonym: "prepositus hypoglossal nucleus" EXACT [] synonym: "Prepositus nucleus" EXACT [] synonym: "prepositus nucleus" EXACT [] xref: FMA:72596 xref: MA:0001023 xref: NIF_GrossAnatomy:birnlex_2652 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002161 name: gracile nucleus alt_id: UBERON:FMA_72602-MA_0001038 def: "." [Wikipedia:Gracile_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Goll's nucleus" EXACT [] synonym: "goll's nucleus" EXACT [] synonym: "Gracile nucleus" EXACT [] xref: FMA:72602 xref: MA:0001038 xref: NIF_GrossAnatomy:birnlex_2643 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002162 name: area postrema alt_id: UBERON:FMA_72607-MA_0001034-ZFA_0005146 def: "An area of medulla oblongata, outside the blood-brain barrier. The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation. Ma 1997." [Wikipedia:Area_postrema, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Area postrema" EXACT [] xref: BTO:0003425 xref: FMA:72607 xref: GAID:591 xref: MA:0001034 xref: NIF_GrossAnatomy:birnlex_2636 xref: TAO:0005146 xref: ZFA:0005146 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002163 name: inferior cerebellar peduncle alt_id: UBERON:FMA_72615-MA_0002744 def: "." [Wikipedia:Inferior_cerebellar_peduncle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Inferior cerebellar peduncle" EXACT [] synonym: "Restiform body" EXACT [] synonym: "restiform body" EXACT [] xref: FMA:72615 xref: MA:0002744 xref: NIF_GrossAnatomy:birnlex_1645 xref: NIF_GrossAnatomy:birnlex_1691 is_a: UBERON:0002474 ! cerebellar peduncle is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002164 name: tectobulbar tract alt_id: UBERON:FMA_72645-ZFA_0000446 def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the optic tectum towards target cells in the premotor reticulospinal system in the hindbrain." [GO:0034429] comment: This class was created automatically from a combination of ontologies synonym: "tecto-bulbar tract" EXACT [] synonym: "Tectobulbar tract" EXACT [] xref: FMA:72645 xref: NIF_GrossAnatomy:birnlex_750 xref: TAO:0000446 xref: ZFA:0000446 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata relationship: part_of UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002165 name: endocardium alt_id: UBERON:FMA_7280-XAO_0000066-ZFA_0001320 def: "Tunica intima which has as its parts the endothelium of endocardium and the fibroelastic connective tissue that surrounds the cavity of a cardiac chamber. // Layer that lines the lumen of the heart." [Wikipedia:Endocardium, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Endocardium" EXACT [] xref: BTO:0000387 xref: EFO:0000821 xref: FMA:7280 xref: GAID:550 xref: galen:Endocardium xref: MAT:0000455 xref: ncithesaurus:Endocardium xref: OpenCyc:Mx4rsWA75K1cEduAAADggVaqvw xref: TAO:0001320 xref: XAO:0000066 xref: ZFA:0001320 is_a: UBERON:0000479 ! portion of tissue relationship: develops_from UBERON:0003084 ! fused heart primordium relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002166 name: endocardium of atrium alt_id: UBERON:FMA_7284-MA_0000077-ZFA_0001614 def: "Endocardium that is part of the atrium." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "Atrial endocardium" EXACT [] synonym: "atrial endocardium" EXACT [] synonym: "atrium endocardium" EXACT [] synonym: "Endocardium of atrium" EXACT [] xref: FMA:7284 xref: HOG:0000606 xref: MA:0000077 xref: ZFA:0001614 is_a: UBERON:0002165 ! endocardium intersection_of: UBERON:0002165 ! endocardium intersection_of: part_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002081 ! cardiac atrium [Term] id: UBERON:0002167 name: right lung alt_id: UBERON:FMA_7309-MA_0000426 def: "Lung which consists of the right upper lobe, middle lobe and right lower lobe." [Wikipedia:Right_lung] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Right lung" EXACT [] xref: EHDAA:4969 xref: FMA:7309 xref: HOG:0000301 xref: MA:0000426 xref: ncithesaurus:Right_Lung is_a: UBERON:0002048 ! lung [Term] id: UBERON:0002168 name: left lung alt_id: UBERON:FMA_7310-MA_0000425 def: "Lung which consists of the left upper lobe and left lower lobe." [Wikipedia:Left_lung] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Left lung" EXACT [] xref: EHDAA:4947 xref: FMA:7310 xref: HOG:0000618 xref: MA:0000425 xref: ncithesaurus:Left_Lung is_a: UBERON:0002048 ! lung [Term] id: UBERON:0002169 name: alveolar sac alt_id: UBERON:FMA_7317-MA_0000418 def: "." [Wikipedia:Alveolar_sac] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Alveolar sac" EXACT [] synonym: "Sacculus alveolaris" EXACT [] synonym: "sacculus alveolaris" EXACT [] xref: BTO:0000061 xref: FMA:7317 xref: MA:0000418 xref: ncithesaurus:Alveolar_Sac is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0002170 name: upper lobe of right lung alt_id: UBERON:FMA_7333-MA_0000429 comment: This class was created automatically from a combination of ontologies synonym: "right lung cranial lobe" EXACT [] synonym: "right lung superior lobe" RELATED [] synonym: "Right upper lobe" EXACT [] synonym: "right upper lobe" EXACT [] synonym: "Right upper lobe of lung" EXACT [] synonym: "right upper lobe of lung" EXACT [] synonym: "Superior lobe of right lung" EXACT [] synonym: "superior lobe of right lung" EXACT [] synonym: "Upper lobe of right lung" EXACT [] xref: FMA:7333 xref: HOG:0000859 xref: MA:0000429 is_a: UBERON:0000101 ! lobe of lung relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0002171 name: lower lobe of right lung alt_id: UBERON:FMA_7337-MA_0000428 comment: This class was created automatically from a combination of ontologies synonym: "Inferior lobe of right lung" EXACT [] synonym: "inferior lobe of right lung" EXACT [] synonym: "Lower lobe of right lung" EXACT [] synonym: "Right lower lobe" EXACT [] synonym: "right lower lobe" EXACT [] synonym: "Right lower lobe of lung" EXACT [] synonym: "right lower lobe of lung" EXACT [] synonym: "right lung caudal lobe" EXACT [] synonym: "right lung inferior lobe" RELATED [] xref: FMA:7337 xref: HOG:0000857 xref: MA:0000428 is_a: UBERON:0000101 ! lobe of lung relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0002172 name: alveolar atrium alt_id: UBERON:FMA_7340-MA_0000419 comment: This class was created automatically from a combination of ontologies synonym: "Alveolar atrium" EXACT [] synonym: "Atrium alveolare" EXACT [] synonym: "atrium alveolare" EXACT [] synonym: "Atrium of alveolus" EXACT [] synonym: "atrium of alveolus" EXACT [] xref: FMA:7340 xref: MA:0000419 is_a: UBERON:0001050 ! atrium intersection_of: UBERON:0001050 ! atrium intersection_of: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0002173 name: alveolar duct alt_id: UBERON:FMA_7341-MA_0000417 def: "." [Wikipedia:Alveolar_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Alveolar duct" EXACT [] xref: FMA:7341 xref: MA:0000417 xref: ncithesaurus:Alveolar_Duct xref: OpenCyc:Mx4rvXmfV5wpEbGdrcN5Y29ycA is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0002174 name: middle lobe of lung alt_id: UBERON:FMA_7383-MA_0000430 def: "." [Wikipedia:Middle_lobe_of_right_lung] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Intermediate lobe of right lung" EXACT [] synonym: "intermediate lobe of right lung" EXACT [] synonym: "Middle lobe of lung" EXACT [] synonym: "Middle lobe of right lung" EXACT [] synonym: "middle lobe of right lung" EXACT [] synonym: "right lung middle lobe" EXACT [] synonym: "Right lung, middle lobe" EXACT [] synonym: "right lung, middle lobe" EXACT [] synonym: "Right middle lobe" EXACT [] synonym: "right middle lobe" EXACT [] synonym: "Right middle lobe of lung" EXACT [] synonym: "right middle lobe of lung" EXACT [] xref: FMA:7383 xref: MA:0000430 is_a: UBERON:0000101 ! lobe of lung relationship: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0002175 name: intermediolateral nucleus alt_id: UBERON:FMA_73915-MA_0002753 def: "." [Wikipedia:Intermediolateral_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Intermediolateral nucleus" EXACT [] synonym: "Intermediolateral nucleus of spinal cord" EXACT [] synonym: "intermediolateral nucleus of spinal cord" EXACT [] synonym: "spinal cord intermediolateral nucleus" EXACT [] xref: FMA:73915 xref: MA:0002753 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002176 name: lateral cervical nucleus alt_id: UBERON:FMA_73921-MA_0002755 comment: This class was created automatically from a combination of ontologies synonym: "Lateral cervical nucleus" EXACT [] xref: FMA:73921 xref: MA:0002755 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0002177 name: right main bronchus alt_id: UBERON:FMA_7395-MA_0001849 def: "." [Wikipedia:Right_main_bronchus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Right bronchus" EXACT [] synonym: "right bronchus" EXACT [] synonym: "Right main bronchus" EXACT [] synonym: "Right principal bronchus" EXACT [] synonym: "right principal bronchus" EXACT [] xref: FMA:7395 xref: MA:0001849 xref: ncithesaurus:Right_Main_Bronchus is_a: UBERON:0002182 ! main bronchus [Term] id: UBERON:0002178 name: left main bronchus alt_id: UBERON:FMA_7396-MA_0001843 def: "." [Wikipedia:Left_main_bronchus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Left bronchus" EXACT [] synonym: "left bronchus" EXACT [] synonym: "Left main bronchus" EXACT [] synonym: "Left principal bronchus" EXACT [] synonym: "left principal bronchus" EXACT [] xref: FMA:7396 xref: MA:0001843 xref: ncithesaurus:Left_Main_Bronchus is_a: UBERON:0002182 ! main bronchus [Term] id: UBERON:0002179 name: lateral funiculus alt_id: UBERON:FMA_74000-ZFA_0000533 def: "." [Wikipedia:Lateral_funiculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lateral funiculus" EXACT [] synonym: "Lateral funiculus of spinal cord" EXACT [] synonym: "lateral funiculus of spinal cord" EXACT [] xref: FMA:74000 xref: TAO:0000533 xref: ZFA:0000533 is_a: UBERON:0000122 ! nerve fiber bundle relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002180 name: ventral funiculus alt_id: UBERON:FMA_74003-ZFA_0000605 def: "." [Wikipedia:Ventral_funiculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anterior funiculus of spinal cord" EXACT [] synonym: "anterior funiculus of spinal cord" EXACT [] synonym: "Ventral funiculus" EXACT [] synonym: "Ventral funiculus of spinal cord" EXACT [] synonym: "ventral funiculus of spinal cord" EXACT [] xref: FMA:74003 xref: TAO:0000605 xref: ZFA:0000605 is_a: UBERON:0000122 ! nerve fiber bundle relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002181 name: substantia gelatinosa alt_id: UBERON:FMA_74019-MA_0001124 def: "." [Wikipedia:Substantia_gelatinosa] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Central gelatinous substance of spinal cord" EXACT [] synonym: "central gelatinous substance of spinal cord" EXACT [] synonym: "Gelatinous substance of posterior horn of spinal cord" EXACT [] synonym: "gelatinous substance of posterior horn of spinal cord" EXACT [] synonym: "Substantia gelatinosa" EXACT [] xref: FMA:74019 xref: GAID:701 xref: MA:0001124 xref: ncithesaurus:Substantia_Gelatinosa is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0002182 name: main bronchus alt_id: UBERON:FMA_7405-MA_0000438 def: "." [Wikipedia:Main_bronchus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bronchus principalis" EXACT [] synonym: "bronchus principalis" EXACT [] synonym: "Main bronchus" EXACT [] synonym: "Primary bronchus" EXACT [] synonym: "primary bronchus" EXACT [] synonym: "Principal bronchus" EXACT [] synonym: "principal bronchus" EXACT [] xref: EFO:0000932 xref: EHDAA:3072 xref: FMA:7405 xref: HOG:0000370 xref: MA:0000438 xref: ncithesaurus:Main_Bronchus is_a: UBERON:0002185 ! bronchus [Term] id: UBERON:0002183 name: lobar bronchus alt_id: UBERON:FMA_7406-MA_0000437 def: "The lobar bronchus is the major airway within the respiratory tree that starts by division of the principal bronchi on both sides and ends at the point of its own subdivision into tertiary or segmental bronchi[GO]." [Wikipedia:Lobar_bronchus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lobar bronchus" EXACT [] synonym: "Secondary bronchus" EXACT [] synonym: "secondary bronchus" EXACT [] xref: EHDAA:4955 xref: EHDAA:4963 xref: EHDAA:4977 xref: EHDAA:4985 xref: EHDAA:4993 xref: EHDAA:8175 xref: EHDAA:8187 xref: EHDAA:8203 xref: EHDAA:8213 xref: EHDAA:8225 xref: FMA:7406 xref: MA:0000437 xref: ncithesaurus:Lobar_Bronchus is_a: UBERON:0002185 ! bronchus relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0002184 name: segmental bronchus alt_id: UBERON:FMA_7407-MA_0000439 def: "." [Wikipedia:Segmental_bronchus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Segmental bronchus" EXACT [] synonym: "Tertiary bronchus" EXACT [] synonym: "tertiary bronchus" EXACT [] xref: EHDAA:7043 xref: EHDAA:7049 xref: EHDAA:7058 xref: EHDAA:7064 xref: EHDAA:7070 xref: FMA:7407 xref: HOG:0001446 xref: MA:0000439 xref: ncithesaurus:Segmental_Bronchus is_a: UBERON:0002185 ! bronchus [Term] id: UBERON:0002185 name: bronchus alt_id: UBERON:FMA_7409-MA_0000436-MIAA_0000133-XAO_0000121 def: "The bronchus is the portion of the airway that connects to the lungs[GO]." [Wikipedia:Bronchus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bronchial trunk" EXACT [] synonym: "bronchial trunk" EXACT [] synonym: "Bronchus" EXACT [] synonym: "main bronchus" RELATED [] xref: BTO:0001340 xref: EFO:0000932 xref: FMA:7409 xref: HOG:0000262 xref: MA:0000436 xref: MAT:0000133 xref: MIAA:0000133 xref: ncithesaurus:Bronchus xref: XAO:0000121 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001558 ! lower respiratory tract relationship: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0002186 name: bronchiole alt_id: UBERON:FMA_7410-MA_0000422 def: "the first airway branch that no longer contains cartilage; it is a branch of the bronchi[GO]." [Wikipedia:Bronchiole] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bronchiole" EXACT [] synonym: "Lobular bronchiole" EXACT [] synonym: "lobular bronchiole" EXACT [] xref: BTO:0002375 xref: EHDAA:8171 xref: EHDAA:8183 xref: EHDAA:8199 xref: EHDAA:8221 xref: FMA:7410 xref: HOG:0000675 xref: MA:0000422 xref: ncithesaurus:Bronchiole is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0002187 name: terminal bronchiole alt_id: UBERON:FMA_7411-MA_0000424 def: "." [Wikipedia:Terminal_bronchiole] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bronchiolus terminalis" EXACT [] synonym: "bronchiolus terminalis" EXACT [] synonym: "Terminal bronchiole" EXACT [] xref: BTO:0003223 xref: FMA:7411 xref: MA:0000424 xref: ncithesaurus:Terminal_Bronchiole is_a: UBERON:0002186 ! bronchiole [Term] id: UBERON:0002188 name: respiratory bronchiole alt_id: UBERON:FMA_7412-MA_0000423 def: "." [Wikipedia:Respiratory_bronchiole] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bronchiolus respiratorius" EXACT [] synonym: "bronchiolus respiratorius" EXACT [] synonym: "Respiratory bronchiole" EXACT [] xref: BTO:0003222 xref: FMA:7412 xref: MA:0000423 xref: ncithesaurus:Respiratory_Bronchiole is_a: UBERON:0002186 ! bronchiole [Term] id: UBERON:0002189 name: outer cortex of kidney alt_id: UBERON:FMA_74285-MA_0001649 comment: This class was created automatically from a combination of ontologies synonym: "Outer cortex of kidney" EXACT [] synonym: "Outer renal cortex" EXACT [] synonym: "outer renal cortex" EXACT [] xref: FMA:74285 xref: MA:0001649 is_a: UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0002190 name: subcutaneous adipose tissue alt_id: UBERON:FMA_74315-MA_0000473 comment: This class was created automatically from a combination of ontologies synonym: "Fatty layer of subcutaneous tissue" EXACT [] synonym: "fatty layer of subcutaneous tissue" EXACT [] synonym: "Subcutaneous adipose tissue" EXACT [] xref: FMA:74315 xref: MA:0000473 is_a: UBERON:0001013 ! adipose tissue [Term] id: UBERON:0002191 name: subiculum alt_id: UBERON:FMA_74414-MA_0000960 def: "." [Wikipedia:Subiculum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Subiculum" EXACT [] synonym: "Subiculum hippocampi" EXACT [] synonym: "subiculum hippocampi" EXACT [] xref: BTO:0003087 xref: FMA:74414 xref: MA:0000960 xref: ncithesaurus:Subiculum xref: NIF_GrossAnatomy:birnlex_1305 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0002192 name: choroidal fissure alt_id: UBERON:FMA_74512-MA_0001305-XAO_0000474-ZFA_0001075 def: "A break in the continuity of the optic cup where the two sides of the cup meet." [ISBN:0815318960] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Chorioid fissure" EXACT [] synonym: "chorioid fissure" EXACT [] synonym: "Choroid fissure" EXACT [] synonym: "choroid fissure" EXACT [] synonym: "Choroidal fissure" EXACT [] xref: EHDAA:4759 xref: FMA:74512 xref: HOG:0000655 xref: MA:0001305 xref: ncithesaurus:Choroidal_Fissure xref: TAO:0001075 xref: XAO:0000474 xref: ZFA:0001075 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0002193 name: hemolymphoid system alt_id: UBERON:FMA_74562-MA_0000013 def: "Anatomical cluster consisting of the hematopoietic system and the lymphoid system, or its analogs." [] comment: This class was created automatically from a combination of ontologies synonym: "Haemolymphoid system" EXACT [] synonym: "haemolymphoid system" RELATED [] synonym: "Hematolymphoid system" EXACT [] synonym: "hematolymphoid system" EXACT [] synonym: "Hemolymphoid system" EXACT [] synonym: "Lymphomyeloid complex" EXACT [] synonym: "lymphomyeloid complex" EXACT [] xref: FMA:74562 xref: MA:0000013 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002194 name: capsule of lymph node alt_id: UBERON:FMA_74604-MA_0000739 def: "Capsule surrounding lymph node composed of connective tissue with some plain muscle fibers. from its internal surface are given off a number of membranous processes or trabeculae, consisting, in man, of connective tissue, with a small admixture of plain muscle fibers; but in many of the lower animals composed almost entirely of involuntary muscle[WP]." [Wikipedia:Lymph_node_capsule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Capsule of lymph node" EXACT [] synonym: "Lymph node capsule" EXACT [] synonym: "lymph node capsule" EXACT [] xref: FMA:74604 xref: MA:0000739 xref: ncithesaurus:Lymph_Node_Capsule is_a: UBERON:0003893 ! capsule intersection_of: UBERON:0003893 ! capsule intersection_of: surrounds UBERON:0000029 ! lymph node relationship: has_part UBERON:0002384 ! connective tissue relationship: surrounds UBERON:0000029 ! lymph node [Term] id: UBERON:0002195 name: trabecula of lymph node alt_id: UBERON:FMA_74605-MA_0000746 def: "Membranous process coming from capsule of lymph node[WP]." [Wikipedia:Lymph_node_trabeculae] comment: This class was created automatically from a combination of ontologies synonym: "Lymph node trabecula" EXACT [] synonym: "lymph node trabecula" EXACT [] synonym: "lymph node trabeculum" EXACT [] synonym: "Trabecula of lymph node" EXACT [] xref: FMA:74605 xref: MA:0000746 xref: ncithesaurus:Lymph_Node_Trabecula is_a: UBERON:0000440 ! trabecula relationship: part_of UBERON:0000029 ! lymph node [Term] id: UBERON:0002196 name: adenohypophysis alt_id: UBERON:FMA_74627-MA_0000177-ZFA_0001282 def: "The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mamalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish. Herzog et al, 2004." [Wikipedia:Adenohypophysis, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Adenohypophysis" EXACT [] synonym: "Anterior lobe (hypophysis)" EXACT [] synonym: "anterior lobe (hypophysis)" EXACT [] synonym: "Anterior lobe of hypophysis" EXACT [] synonym: "anterior lobe of hypophysis" EXACT [] synonym: "Anterior lobe of pituitary" EXACT [] synonym: "anterior lobe of pituitary" EXACT [] synonym: "Anterior lobe of pituitary gland" EXACT [] synonym: "anterior lobe of pituitary gland" EXACT [] synonym: "anterior pituitary" EXACT [] synonym: "Pituitary gland, anterior lobe" EXACT [] synonym: "pituitary gland, anterior lobe" EXACT [] xref: BTO:0000040 xref: EFO:0000230 xref: FMA:74627 xref: HOG:0000141 xref: MA:0000177 xref: NIF_GrossAnatomy:birnlex_1581 xref: TAO:0001282 xref: ZFA:0001282 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0000007 ! pituitary gland [Term] id: UBERON:0002197 name: median eminence of neurohypophysis alt_id: UBERON:FMA_74634-MA_0000859 def: "." [Wikipedia:Median_eminence] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Median eminence" EXACT [] synonym: "median eminence" EXACT [] synonym: "Median eminence of hypothalamus" EXACT [] synonym: "median eminence of hypothalamus" EXACT [] synonym: "Median eminence of neurohypophysis" EXACT [] synonym: "Median eminence of posterior lobe of pituitary gland" EXACT [] synonym: "median eminence of posterior lobe of pituitary gland" EXACT [] synonym: "Median eminence of tuber cinereum" EXACT [] synonym: "median eminence of tuber cinereum" EXACT [] xref: BTO:0001954 xref: EHDAA:7540 xref: FMA:74634 xref: GAID:463 xref: HOG:0001179 xref: MA:0000859 xref: NIF_GrossAnatomy:birnlex_925 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002198 name: neurohypophysis alt_id: UBERON:FMA_74636-ZFA_0001271 def: "comprises the posterior lobe of the pituitary gland and is part of the endocrine system[WP]. part of the pituitary gland that secretes hormones involved in blood pressure regulation[GO]." [Wikipedia:Neurohypophysis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "neurohypophysis" EXACT [] synonym: "pituitary gland, posterior lobe" EXACT [] synonym: "posterior lobe of pituitary" EXACT [] synonym: "posterior pituitary" EXACT [] xref: BTO:0000937 xref: EHDAA:7536 xref: FMA:74628 xref: HOG:0000142 xref: MA:0000178 xref: NIF_GrossAnatomy:birnlex_1586 xref: TAO:0001271 xref: ZFA:0001271 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0000007 ! pituitary gland [Term] id: UBERON:0002199 name: integument alt_id: UBERON:FMA_74657-ZFA_0000368 def: "The outer protective barrier that separates the animal from its environment[ZFA]." [Wikipedia:Integument, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Integument" EXACT [] synonym: "skin" RELATED [] xref: AAO:0000239 xref: BTO:0000634 xref: FMA:74657 xref: galen:Integument xref: HAO:0000421 xref: TAO:0000368 xref: ZFA:0000368 is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0002200 name: vasculature of head alt_id: UBERON:FMA_74710-ZFA_0001267 comment: This class was created automatically from a combination of ontologies synonym: "cranial vasculature" EXACT [] synonym: "Head vasculature" EXACT [] synonym: "head vasculature" RELATED [] synonym: "Vasculature of head" EXACT [] xref: FMA:74710 xref: TAO:0001267 xref: ZFA:0001267 is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0000033 ! head [Term] id: UBERON:0002201 name: vasculature of trunk alt_id: UBERON:FMA_74712-ZFA_0005024 comment: This class was created automatically from a combination of ontologies synonym: "Trunk vasculature" EXACT [] synonym: "trunk vasculature" EXACT [] synonym: "Vasculature of trunk" EXACT [] xref: FMA:74712 xref: TAO:0005024 xref: ZFA:0005024 is_a: UBERON:0002049 ! vasculature intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0002202 name: submucosa of trachea alt_id: UBERON:FMA_7472-MA_0001860 comment: This class was created automatically from a combination of ontologies synonym: "Submucosa of trachea" EXACT [] synonym: "trachea submucosa" EXACT [] synonym: "Tracheal submucosa" EXACT [] synonym: "tracheal submucosa" EXACT [] xref: FMA:7472 xref: MA:0001860 xref: ncithesaurus:Trachea_Submucosa is_a: UBERON:0000009 ! submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001005 ! trachea relationship: part_of UBERON:0001005 ! trachea [Term] id: UBERON:0002203 name: vasculature of eye alt_id: UBERON:FMA_74743-ZFA_0007057 comment: This class was created automatically from a combination of ontologies synonym: "Eye vasculature" EXACT [] synonym: "eye vasculature" RELATED [] synonym: "ocular vasculature" EXACT [] synonym: "optic vasculature" RELATED [] synonym: "Vasculature of eye" EXACT [] xref: FMA:74743 xref: ZFA:0007057 is_a: UBERON:0002200 ! vasculature of head intersection_of: UBERON:0002049 ! vasculature intersection_of: part_of UBERON:0000970 ! eye [Term] id: UBERON:0002204 name: musculoskeletal system alt_id: UBERON:FMA_7482-MA_0002418-XAO_0000168 def: "Anatomical system that provides locomotion and physical support to the organism." [Wikipedia:Musculoskeletal_system, XB:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Musculo-skeletal system" EXACT [] synonym: "musculo-skeletal system" EXACT [] synonym: "Musculoskeletal system" EXACT [] xref: FMA:7482 xref: GAID:98 xref: HOG:0001275 xref: MA:0002418 xref: ncithesaurus:Musculoskeletal_System xref: OpenCyc:Mx4rQRpVNgAKEdyHxgDggVfs8g xref: XAO:0000168 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system relationship: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0002205 name: manubrium alt_id: UBERON:FMA_7486-ZFA_0001601 def: "." [Wikipedia:Manubrium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "anterior process" RELATED [] synonym: "horiztonal process" RELATED [] synonym: "Manubrium" EXACT [] synonym: "manubrium incudus" RELATED [] synonym: "Manubrium of sternum" EXACT [] synonym: "manubrium of sternum" EXACT [] xref: AAO:0000680 xref: FMA:7486 xref: GAID:247 xref: OpenCyc:Mx4rvXOLAZwpEbGdrcN5Y29ycA xref: TAO:0001553 xref: ZFA:0001601 relationship: part_of UBERON:0000975 ! vertebrate sternum [Term] id: UBERON:0002206 name: mammillary body alt_id: UBERON:FMA_74877-MA_0000174 def: "The mammilary body is a protrusion at the posterior end of the hypothalamus that contains hypothalamic nuclei[GO]." [Wikipedia:Mammillary_body] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Mamillary body" EXACT [] synonym: "mamillary body" EXACT [] synonym: "Mammillary body" EXACT [] xref: FMA:74877 xref: GAID:652 xref: MA:0000174 xref: ncithesaurus:Mamillary_Body xref: NIF_GrossAnatomy:birnlex_865 xref: ZFA:0000334 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0002207 name: xiphoid process alt_id: UBERON:FMA_7488-MA_0001884 def: "." [Wikipedia:Xiphoid_process] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "xiphoid cartilage" EXACT [] synonym: "Xiphoid process" EXACT [] synonym: "Xiphoid process of sternum" EXACT [] synonym: "xiphoid process of sternum" EXACT [] xref: FMA:7488 xref: MA:0001884 xref: ncithesaurus:Xiphoid_Process is_a: UBERON:0002236 ! costal cartilage relationship: part_of UBERON:0000975 ! vertebrate sternum [Term] id: UBERON:0002208 name: sternebra alt_id: UBERON:FMA_7489-MA_0001333 def: "." [Wikipedia:Sternebra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Sternebra" EXACT [] xref: FMA:7489 xref: MA:0001333 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000975 ! vertebrate sternum [Term] id: UBERON:0002209 name: fibrous joint alt_id: UBERON:FMA_7492-MA_0000321 def: "Nonsynovial joint in which the articulating bones or cartilages are connected by ligaments. Examples: sagittal suture, inferior tibiofibular syndesmosis, gomphosis." [Wikipedia:Fibrous_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Articulatio fibrosa" EXACT [] synonym: "articulatio fibrosa" EXACT [] synonym: "Fibrous joint" EXACT [] xref: FMA:7492 xref: MA:0000321 xref: ZFA:0005156 is_a: UBERON:0000982 ! joint is_a: UBERON:0003657 ! implied link automatically realized ! limb joint [Term] id: UBERON:0002210 name: syndesmosis alt_id: UBERON:FMA_7494-MA_0001500 def: "Fibrous joint in which the articulating bones or cartilages of the vertebral column and the limbs as well as articulating ossicles, are connected by skeletal ligaments or membranes. Examples: Intervertebral syndesmosis, inferior tibiofibular joint." [Wikipedia:Syndesmosis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Syndesmosis" EXACT [] xref: FMA:7494 xref: MA:0001500 is_a: UBERON:0002209 ! fibrous joint is_a: UBERON:0002213 ! cartilaginous joint [Term] id: UBERON:0002211 name: segment of nerve alt_id: UBERON:FMA_74941-ZFA_0001328 comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Neural segment" EXACT [] synonym: "neural segment" RELATED [] xref: FMA:74941 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001021 ! nerve [Term] id: UBERON:0002212 name: macula of saccule of membranous labyrinth alt_id: UBERON:FMA_74944-MA_0001201 def: "." [Wikipedia:Macula_of_saccule] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Macula of saccule" EXACT [] synonym: "macula of saccule" EXACT [] synonym: "Macula of saccule of membranous labyrinth" EXACT [] synonym: "Saccular macula of membranous labyrinth" EXACT [] synonym: "saccular macula of membranous labyrinth" EXACT [] synonym: "saccular maculs" RELATED [] xref: FMA:74944 xref: MA:0001201 xref: ncithesaurus:Macula_of_Saccule xref: ZFA:0007000 is_a: UBERON:0000054 ! macula intersection_of: UBERON:0000054 ! macula intersection_of: part_of UBERON:0001854 ! saccule of membranous labyrinth relationship: part_of UBERON:0001854 ! saccule of membranous labyrinth [Term] id: UBERON:0002213 name: cartilaginous joint alt_id: UBERON:FMA_7496-MA_0000320 def: "Nonsynovial joint in which the articulating bones or cartilages are connected by cartilage. Examples: Spheno-occipital synchondrosis, first sternocostal joint, pubic symphysis." [Wikipedia:Cartilaginous_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Articulatio cartilaginea" EXACT [] synonym: "articulatio cartilaginea" EXACT [] synonym: "Cartilaginous joint" EXACT [] xref: FMA:7496 xref: MA:0000320 xref: ZFA:0005155 is_a: UBERON:0000982 ! joint is_a: UBERON:0003657 ! implied link automatically realized ! limb joint [Term] id: UBERON:0002214 name: macula of utricle of membranous labyrinth alt_id: UBERON:FMA_74960-MA_0001203 def: "." [Wikipedia:Macula_of_utricle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Macula of utricle" EXACT [] synonym: "macula of utricle" EXACT [] synonym: "Macula of utricle of membranous labyrinth" EXACT [] synonym: "utricular macula" RELATED [] xref: FMA:74960 xref: MA:0001203 xref: ncithesaurus:Macula_of_Utricle xref: ZFA:0000030 is_a: UBERON:0000054 ! macula intersection_of: UBERON:0000054 ! macula intersection_of: part_of UBERON:0001853 ! utricle of membranous labyrinth relationship: part_of UBERON:0001853 ! utricle of membranous labyrinth [Term] id: UBERON:0002215 name: synchondrosis alt_id: UBERON:FMA_7497-MA_0001501 def: "Cartilaginous joint in which the articulating bones or cartilages are connected by hyaline cartilage. Examples: spheno-occipital synchondrosis, first sternocostal joint." [Wikipedia:Synchondrosis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Epiphysial cartilage" EXACT [] synonym: "epiphysial cartilage" EXACT [] synonym: "Primary cartilaginous joint" EXACT [] synonym: "primary cartilaginous joint" EXACT [] synonym: "Synchondrosis" EXACT [] xref: FMA:7497 xref: MA:0001501 is_a: UBERON:0002209 ! fibrous joint is_a: UBERON:0002213 ! cartilaginous joint [Term] id: UBERON:0002216 name: symphysis alt_id: UBERON:FMA_7498-MA_0001504 def: "Cartilaginous joint in which the articulating bones or cartilages are connected by fibrocartilage. Examples: pubic symphysis, intervertebral symphysis, manubriosternal joint." [Wikipedia:Symphysis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Secondary cartilaginous joint" EXACT [] synonym: "secondary cartilaginous joint" EXACT [] synonym: "Symphysis" EXACT [] xref: FMA:7498 xref: MA:0001504 is_a: UBERON:0002209 ! fibrous joint is_a: UBERON:0002213 ! cartilaginous joint [Term] id: UBERON:0002217 name: synovial joint alt_id: UBERON:FMA_7501-MA_0000322 def: "Joint in which the articulating bones or cartilages are connected by an articular capsule which encloses a synovial membrane and a synovial cavity. Examples: Temporomandibular joint, knee joint." [Wikipedia:Synovial_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Articulatio synoviale" EXACT [] synonym: "articulatio synoviale" EXACT [] synonym: "Synovial joint" EXACT [] xref: FMA:7501 xref: MA:0000322 xref: OpenCyc:Mx4rv2bBV5wpEbGdrcN5Y29ycA xref: ZFA:0005153 is_a: UBERON:0000982 ! joint is_a: UBERON:0003657 ! implied link automatically realized ! limb joint [Term] id: UBERON:0002218 name: tympanic ring alt_id: UBERON:FMA_75053-MA_0001225 comment: This class was created automatically from a combination of ontologies synonym: "Tympanic ring" EXACT [] xref: FMA:75053 xref: MA:0001225 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001756 ! middle ear relationship: part_of UBERON:0002204 ! musculoskeletal system [Term] id: UBERON:0002219 name: subfornical organ alt_id: UBERON:FMA_75260-MA_0000940 def: "." [Wikipedia:Subfornical_organ] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Subfornical organ" EXACT [] xref: FMA:75260 xref: GAID:795 xref: MA:0000940 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002221 name: fontanelle alt_id: UBERON:FMA_75438-MA_0001465 def: "." [Wikipedia:Fontanelle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "fontanel" EXACT [] synonym: "Fontanelle" EXACT [] xref: FMA:75438 xref: MA:0001465 xref: ncithesaurus:Fontanelle xref: TAO:0001738 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0002222 name: perichondrium alt_id: UBERON:FMA_75446-ZFA_0001634 def: "Portion of connective tissue which surrounds cartilage." [Wikipedia:Perichondrium, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cartilage connective tissue" RELATED [] synonym: "Perichondrium" EXACT [] xref: FMA:75446 xref: TAO:0001643 xref: ZFA:0001634 is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0002223 name: endolymphatic sac alt_id: UBERON:FMA_75639-MA_0001188 def: "." [Wikipedia:Endolymphatic_sac] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Endolymphatic sac" EXACT [] xref: EHDAA:7761 xref: FMA:75639 xref: GAID:887 xref: HOG:0000791 xref: MA:0001188 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002049 ! vasculature [Term] id: UBERON:0002224 name: thoracic cavity alt_id: UBERON:FMA_7565-MA_0000032 def: "Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm. Examples: There is only one thoracic cavity." [Wikipedia:Thoracic_cavity] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cavity of chest" EXACT [] synonym: "cavity of chest" EXACT [] synonym: "Cavity of thorax" EXACT [] synonym: "cavity of thorax" EXACT [] synonym: "Chest cavity" EXACT [] synonym: "chest cavity" EXACT [] synonym: "Pectoral cavity" EXACT [] synonym: "pectoral cavity" EXACT [] synonym: "Thoracic cavity" EXACT [] xref: FMA:7565 xref: GAID:93 xref: MA:0000032 xref: ncithesaurus:Thoracic_Cavity xref: OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg xref: OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0000915 ! thorax [Term] id: UBERON:0002225 name: costal arch alt_id: UBERON:FMA_7569-MA_0001396 comment: This class was created automatically from a combination of ontologies synonym: "Costal arch" EXACT [] xref: FMA:7569 xref: MA:0001396 xref: ncithesaurus:Costal_Arch is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002228 ! rib [Term] id: UBERON:0002226 name: basilar membrane of cochlea alt_id: UBERON:FMA_75706-MA_0001190 def: "." [Wikipedia:Basilar_membrane] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "basilar membrane" EXACT [] synonym: "Basilar membrane of cochlea" EXACT [] xref: FMA:75706 xref: GAID:872 xref: MA:0001190 xref: ncithesaurus:Basilar_Membrane xref: NIF_GrossAnatomy:birnlex_2521 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002227 name: spiral organ of cochlea alt_id: UBERON:FMA_75715-MA_0001193 def: "." [Wikipedia:Organ_of_Corti] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cochlear spiral organ" EXACT [] synonym: "cochlear spiral organ" EXACT [] synonym: "Organ of Corti" EXACT [] synonym: "organ of corti" RELATED [] synonym: "Spiral organ" EXACT [] synonym: "spiral organ" EXACT [] synonym: "Spiral organ of cochlea" EXACT [] synonym: "Spiral organ of Corti" EXACT [] synonym: "spiral organ of corti" EXACT [] xref: BTO:0001691 xref: EFO:0001364 xref: FMA:75715 xref: GAID:772 xref: MA:0001193 xref: ncithesaurus:Organ_of_Corti xref: NIF_GrossAnatomy:birnlex_2526 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002228 name: rib alt_id: UBERON:FMA_7574-MA_0000315-ZFA_0000538 def: "Ribs are intersegmental rod-shaped bones that form in the peritoneal membrane and attach to the vertebral parapophyses. They protect and support internal organs." [Wikipedia:Rib, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "dorsal rib" RELATED [] synonym: "pleural rib" RELATED [] synonym: "Rib" EXACT [] xref: AAO:0000545 xref: FMA:7574 xref: GAID:245 xref: HOG:0001154 xref: MA:0000315 xref: ncithesaurus:Rib xref: OpenCyc:Mx4rvVjNoZwpEbGdrcN5Y29ycA xref: TAO:0000538 xref: ZFA:0000538 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003459 ! implied link automatically realized ! chest bone is_a: UBERON:0003463 ! implied link automatically realized ! trunk bone is_a: UBERON:0003572 ! implied link automatically realized ! chest connective tissue is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue relationship: part_of UBERON:0001443 ! chest relationship: part_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0002412 ! vertebra [Term] id: UBERON:0002229 name: interparietal bone alt_id: UBERON:FMA_75748-MA_0001467 comment: This class was created automatically from a combination of ontologies synonym: "Interparietal bone" EXACT [] xref: FMA:75748 xref: MA:0001467 is_a: UBERON:0001474 ! bone [Term] id: UBERON:0002230 name: head of rib alt_id: UBERON:FMA_7575-MA_0001415 def: "." [Wikipedia:Head_of_rib] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Head of rib" EXACT [] synonym: "Rib head" EXACT [] synonym: "rib head" EXACT [] xref: FMA:7575 xref: MA:0001415 xref: ncithesaurus:Rib_Head is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002228 ! rib [Term] id: UBERON:0002231 name: body of rib alt_id: UBERON:FMA_7577-MA_0001416 comment: This class was created automatically from a combination of ontologies synonym: "Body of rib" EXACT [] synonym: "Rib body" EXACT [] synonym: "rib body" EXACT [] synonym: "rib shaft" EXACT [] synonym: "Shaft of rib" EXACT [] synonym: "shaft of rib" EXACT [] xref: FMA:7577 xref: MA:0001416 xref: ncithesaurus:Rib_Shaft is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002228 ! rib [Term] id: UBERON:0002232 name: olfactory gland alt_id: UBERON:FMA_75801-MA_0000287 comment: This class was created automatically from a combination of ontologies synonym: "Olfactory gland" EXACT [] synonym: "Olfactory gland of Bowman" EXACT [] synonym: "olfactory gland of bowman" RELATED [] xref: BTO:0001697 xref: FMA:75801 xref: MA:0000287 is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0001997 ! olfactory epithelium [Term] id: UBERON:0002233 name: tectorial membrane of cochlea alt_id: UBERON:FMA_75805-MA_0001199 def: "." [Wikipedia:Tectorial_membrane] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Tectorial membrane" EXACT [] synonym: "tectorial membrane" EXACT [] synonym: "Tectorial membrane of cochlea" EXACT [] synonym: "Tectorial membrane of spiral organ of cochlea" EXACT [] synonym: "tectorial membrane of spiral organ of cochlea" EXACT [] xref: FMA:75805 xref: GAID:876 xref: MA:0001199 xref: ncithesaurus:Tectorial_Membrane xref: NIF_GrossAnatomy:birnlex_2531 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002234 name: proximal phalanx of finger alt_id: UBERON:FMA_75816-MA_0001395 comment: This class was created automatically from a combination of ontologies synonym: "Proximal phalanx of finger" EXACT [] synonym: "proximal phalanx of hand" EXACT [] xref: FMA:75816 xref: MA:0001395 xref: ncithesaurus:Proximal_Phalanx_of_Hand is_a: UBERON:0001436 ! phalanx of finger [Term] id: UBERON:0002235 name: tubercle of rib alt_id: UBERON:FMA_7583-MA_0001417 def: "." [Wikipedia:Tubercle_of_rib] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Rib tubercle" EXACT [] synonym: "rib tubercle" EXACT [] synonym: "Tubercle of rib" EXACT [] xref: FMA:7583 xref: MA:0001417 xref: ncithesaurus:Rib_Tubercle is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002231 ! body of rib [Term] id: UBERON:0002236 name: costal cartilage alt_id: UBERON:FMA_7591-MA_0000106 def: "." [Wikipedia:Costal_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Costal cartilage" EXACT [] xref: FMA:7591 xref: MA:0000106 xref: ncithesaurus:Costal_Cartilage is_a: UBERON:0002418 ! cartilage relationship: part_of UBERON:0002228 ! rib [Term] id: UBERON:0002237 name: true rib alt_id: UBERON:FMA_7592-MA_0001419 comment: This class was created automatically from a combination of ontologies synonym: "Costa vera" EXACT [] synonym: "costa vera" EXACT [] synonym: "True rib" EXACT [] xref: FMA:7592 xref: MA:0001419 xref: OpenCyc:Mx4rv4-iWJwpEbGdrcN5Y29ycA is_a: UBERON:0002228 ! rib [Term] id: UBERON:0002238 name: false rib alt_id: UBERON:FMA_7594-MA_0001398 def: "." [Wikipedia:False_rib] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Costa spuria" EXACT [] synonym: "costa spuria" EXACT [] synonym: "False rib" EXACT [] xref: FMA:7594 xref: MA:0001398 is_a: UBERON:0002228 ! rib [Term] id: UBERON:0002239 name: floating rib alt_id: UBERON:FMA_7595-MA_0001399 def: "." [Wikipedia:Floating_rib] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Costa fluitante" EXACT [] synonym: "costa fluitante" EXACT [] synonym: "Floating rib" EXACT [] xref: FMA:7595 xref: MA:0001399 xref: OpenCyc:Mx4rvaPCWZwpEbGdrcN5Y29ycA is_a: UBERON:0002238 ! false rib [Term] id: UBERON:0002240 name: spinal cord alt_id: UBERON:FMA_7647-MA_0000216-MIAA_0000183-XAO_0000020-ZFA_0000075 def: "Organ component of neuraxis that has as its parts gray matter and white matter that surround the central canal. Examples: There is only one spinal cord. // Elongated, approximately cylindrical part of the central nervous system that lies in the vertebral canal and from which the spinal nerves emerge." [OMD:spinal+cord, Wikipedia:Spinal_cord] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Spinal cord" EXACT [] xref: BTO:0001279 xref: EFO:0000110 xref: EHDAA:2863 xref: FMA:7647 xref: GAID:695 xref: HOG:0000601 xref: MA:0000216 xref: MAT:0000183 xref: MIAA:0000183 xref: ncithesaurus:Spinal_Cord xref: NIF_GrossAnatomy:birnlex_1709 xref: OpenCyc:Mx4rvVjjk5wpEbGdrcN5Y29ycA xref: TAO:0000075 xref: XAO:0000020 xref: ZFA:0000075 is_a: UBERON:0000489 ! cavitated compound organ relationship: develops_from UBERON:0003076 ! posterior neural tube relationship: disconnected_from UBERON:0000955 ! brain relationship: part_of UBERON:0001017 ! central nervous system relationship: part_of UBERON:0001137 ! back [Term] id: UBERON:0002241 name: chondrocranium alt_id: UBERON:FMA_76621-XAO_0003059-ZFA_0001424 def: "Cranial skeletal elements composed of cartilage and cartilage replacement bones." [ISBN:0471209627, ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "cartilaginous skull" RELATED [] synonym: "chondocranium" RELATED [] synonym: "Chondrocranium" EXACT [] synonym: "neurocranium" RELATED [] xref: AAO:0000094 xref: EFO:0000943 xref: EHDAA:6031 xref: FMA:76621 xref: HOG:0000288 xref: MA:0000317 xref: ncithesaurus:Chondrocranium xref: TAO:0001424 xref: XAO:0003059 xref: ZFA:0001424 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002242 name: nucleus pulposus alt_id: UBERON:FMA_76703-MA_0000112 def: "a jelly-like connective tissue in the middle of the spinal disc. It is the remnant of the notochord. It functions to distribute hydraulic pressure in all directions within each disc under compressive loads. The nucleus pulposus consists of chondrocytes, collagen fibrils, and proteoglycan aggrecans that have hyaluronic long chains which attract water. Attached to each hyaluronic chain are side chains of chondroitin sulfate and keratan sulfate[WP]." [Wikipedia:Nucleus_pulposus] subset: uberon_slim synonym: "pulpy nucleus" EXACT [] xref: BTO:0003626 xref: FMA:76703 xref: MA:0000112 is_a: UBERON:0002384 ! connective tissue relationship: surrounded_by UBERON:0001066 ! intervertebral disk [Term] id: UBERON:0002243 name: cutaneous vein alt_id: UBERON:FMA_76720-MA_0002098 comment: This class was created automatically from a combination of ontologies synonym: "Cutaneous vein" EXACT [] xref: FMA:76720 xref: MA:0002098 xref: ncithesaurus:Cutaneous_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002244 name: premaxilla alt_id: UBERON:FMA_76869-MA_0001493-ZFA_0000567 def: "The premaxilla is a bone of the upper jaw. It is an L-shaped bone first visible as a thin sliver in the anterodorsal region of the upper lip, anterior to the dorsal tip of the maxilla (5.7 mm). In the adult, the premaxilla is ligamentously attached to its counterpart at the midline and the kinethmoid posterodorsally, by the premaxillo-rostroid ligaments. Premaxillary teeth are absent in zebrafish." [Wikipedia:Premaxilla, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Premaxilla" EXACT [] synonym: "premaxillae" RELATED [] xref: AAO:0000461 xref: EHDAA:6962 xref: EHDAA:8033 xref: FMA:76869 xref: HOG:0000426 xref: MA:0001493 xref: TAO:0000567 xref: ZFA:0000567 is_a: UBERON:0002514 ! intramembranous bone [Term] id: UBERON:0002245 name: hemisphere of cerebellum alt_id: UBERON:FMA_76925-MA_0000200 def: "." [Wikipedia:Cerebellar_hemisphere] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "cerebellar hemisphere" EXACT [] synonym: "Cerebellum hemisphere" EXACT [] synonym: "cerebellum hemisphere" EXACT [] synonym: "Hemisphere of cerebellum" EXACT [] synonym: "Hemisphere of cerebellum [H II - H X]" EXACT [] synonym: "hemisphere of cerebellum [h ii - h x]" EXACT [] xref: FMA:76925 xref: MA:0000200 xref: NIF_GrossAnatomy:birnlex_1575 is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex is_a: UBERON:0002946 ! regional part of cerebellum relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0002246 name: dorsal thoracic nucleus alt_id: UBERON:FMA_77023-MA_0001121 def: "." [Wikipedia:Clarke's_column] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Clarke's column" EXACT [] synonym: "clarke's column" EXACT [] synonym: "Clarke's nucleus" EXACT [] synonym: "clarke's nucleus" RELATED [] synonym: "Dorsal thoracic nucleus" EXACT [] synonym: "Posterior thoracic nucleus" EXACT [] synonym: "posterior thoracic nucleus" EXACT [] synonym: "spinal cord dorsal nucleus" EXACT [] synonym: "Stilling-Clarke's column" EXACT [] synonym: "stilling-clarke's column" EXACT [] synonym: "Stilling-Clarke's nucleus" EXACT [] synonym: "stilling-clarke's nucleus" EXACT [] xref: FMA:77023 xref: MA:0001121 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002256 ! dorsal horn of spinal cord [Term] id: UBERON:0002247 name: uterine horn alt_id: UBERON:FMA_77053-MA_0000393 def: "." [Wikipedia:Uterine_horn] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Uterine horn" EXACT [] xref: EFO:0000975 xref: FMA:77053 xref: MA:0000393 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0002248 name: transverse pericardial sinus alt_id: UBERON:FMA_77132-MA_0001880 def: "." [Wikipedia:Transverse_pericardial_sinus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Thiele's canal" EXACT [] synonym: "thiele's canal" EXACT [] synonym: "Transverse pericardial sinus" EXACT [] synonym: "Transverse sinus of pericardial cavity" EXACT [] synonym: "transverse sinus of pericardial cavity" EXACT [] xref: EHDAA:796 xref: FMA:77132 xref: MA:0001880 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0002249 name: median artery alt_id: UBERON:FMA_77142-MA_0001999 comment: This class was created automatically from a combination of ontologies synonym: "Median artery" EXACT [] xref: FMA:77142 xref: MA:0001999 xref: ncithesaurus:Median_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002250 name: popliteal artery alt_id: UBERON:FMA_77155-MA_0002021 def: "." [Wikipedia:Popliteal_artery] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Popliteal artery" EXACT [] xref: FMA:77155 xref: GAID:504 xref: MA:0002021 xref: ncithesaurus:Popliteal_Artery xref: OpenCyc:Mx4rvduV6pwpEbGdrcN5Y29ycA is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002251 name: iliocostalis alt_id: UBERON:FMA_77177-MA_0002319 def: "." [Wikipedia:Iliocostalis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Iliocostalis" EXACT [] xref: FMA:77177 xref: MA:0002319 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0002252 name: splenius alt_id: UBERON:FMA_77180-MA_0002382 def: "." [Wikipedia:Splenius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Splenius" EXACT [] xref: FMA:77180 xref: MA:0002382 xref: ncithesaurus:Splenius is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0002253 name: incisive bone alt_id: UBERON:FMA_77231-MA_0001485 def: "." [Wikipedia:Incisive_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Incisive bone" EXACT [] xref: FMA:77231 xref: MA:0001485 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0002254 name: thyroglossal duct alt_id: UBERON:FMA_77274-MA_0000130 def: "." [Wikipedia:Thyroglossal_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Thyroglossal duct" EXACT [] xref: FMA:77274 xref: HOG:0000746 xref: MA:0000130 xref: ncithesaurus:Thyroglossal_Duct is_a: UBERON:0000058 ! duct is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0002255 name: vomeronasal organ alt_id: UBERON:FMA_77280-MA_0000289 def: "." [Wikipedia:Vomeronasal_organ] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Jacobson's organ" EXACT [] synonym: "jacobson's organ" EXACT [] synonym: "organ of jacobsen" RELATED [] synonym: "Vomeronasal organ" EXACT [] xref: BTO:0002608 xref: EFO:0001934 xref: EHDAA:7865 xref: FMA:77280 xref: GAID:354 xref: HOG:0000665 xref: MA:0000289 is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002256 name: dorsal horn of spinal cord alt_id: UBERON:FMA_77405-MA_0001119 comment: This class was created automatically from a combination of ontologies synonym: "Dorsal grey column of spinal cord" EXACT [] synonym: "dorsal grey column of spinal cord" EXACT [] synonym: "Dorsal horn of spinal cord" EXACT [] synonym: "Posterior grey column of spinal cord" EXACT [] synonym: "posterior grey column of spinal cord" EXACT [] synonym: "spinal cord dorsal horn" EXACT [] xref: FMA:256530 xref: FMA:77405 xref: HOG:0001287 xref: MA:0001119 xref: NIF_GrossAnatomy:birnlex_2667 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002315 ! gray matter of spinal cord [Term] id: UBERON:0002257 name: ventral horn of spinal cord alt_id: UBERON:FMA_77431-MA_0001134 comment: This class was created automatically from a combination of ontologies synonym: "Anterior grey column of spinal cord" EXACT [] synonym: "anterior grey column of spinal cord" EXACT [] synonym: "spinal cord ventral horn" EXACT [] synonym: "Ventral grey column of spinal cord" EXACT [] synonym: "ventral grey column of spinal cord" EXACT [] synonym: "Ventral horn of spinal cord" EXACT [] xref: FMA:256541 xref: FMA:77431 xref: HOG:0001288 xref: MA:0001134 xref: NIF_GrossAnatomy:birnlex_2668 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002315 ! gray matter of spinal cord [Term] id: UBERON:0002258 name: dorsal funiculus alt_id: UBERON:FMA_77461-ZFA_0000501 def: "." [Wikipedia:Dorsal_funiculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Dorsal funiculus" EXACT [] synonym: "Dorsal funiculus of spinal cord" EXACT [] synonym: "dorsal funiculus of spinal cord" EXACT [] synonym: "Posterior funiculus of spinal cord" EXACT [] synonym: "posterior funiculus of spinal cord" EXACT [] xref: FMA:77461 xref: TAO:0000501 xref: ZFA:0000501 is_a: UBERON:0000122 ! nerve fiber bundle relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002259 name: tectal plate alt_id: UBERON:FMA_77488-MA_0002567 def: "." [Wikipedia:Corpora_quadrigemina] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "corpora quadrigemina" EXACT [] synonym: "Quadrigeminal plate" EXACT [] synonym: "quadrigeminal plate" EXACT [] synonym: "Tectal plate" EXACT [] xref: BTO:0001710 xref: FMA:77488 xref: GAID:574 xref: MA:0002567 xref: ncithesaurus:Corpora_Quadrigemina is_a: UBERON:0000064 ! organ part is_a: UBERON:0002966 ! implied link automatically realized ! regional part of midbrain tectum relationship: part_of UBERON:0002314 ! midbrain tectum [Term] id: UBERON:0002260 name: ventral root alt_id: UBERON:FMA_77516-ZFA_0000705 def: "The efferent motor root of a spinal nerve. At its distal end, the ventral root joins with the dorsal root to form a mixed spinal nerve." [Wikipedia:Ventral_root] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ventral root" EXACT [] xref: FMA:77516 xref: NIF_GrossAnatomy:nlx_anat_20090209 xref: TAO:0000705 xref: ZFA:0000705 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002261 name: dorsal root alt_id: UBERON:FMA_77517-ZFA_0000652 def: "." [Wikipedia:Dorsal_root] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Dorsal root" EXACT [] xref: FMA:77517 xref: TAO:0000652 xref: ZFA:0000652 is_a: UBERON:0002211 ! segment of nerve relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002262 name: celiac ganglion alt_id: UBERON:FMA_77570-MA_0001158 def: "." [Wikipedia:Celiac_ganglion] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Celiac ganglion" EXACT [] synonym: "Coeliac ganglion" EXACT [] synonym: "coeliac ganglion" RELATED [] xref: EHDAA:8946 xref: FMA:77570 xref: MA:0001158 xref: ncithesaurus:Coeliac_Ganglion is_a: UBERON:0001806 ! sympathetic ganglion [Term] id: UBERON:0002263 name: lentiform nucleus alt_id: UBERON:FMA_77615-MA_0000896 def: "." [Wikipedia:Lentiform_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lenticular nucleus" EXACT [] synonym: "lenticular nucleus" EXACT [] synonym: "Lentiform nucleus" EXACT [] xref: FMA:77615 xref: MA:0000896 xref: ncithesaurus:Lenticular_Nucleus is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002264 name: olfactory bulb alt_id: UBERON:FMA_77624-MA_0000194-MIAA_0000116-ZFA_0000402 def: "Segment of neural tree organ which is continuous with a set of olfactory nerves and an olfactory tract." [Wikipedia:Olfactory_bulb] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "main olfactory bulb" RELATED [] synonym: "Olfactory bulb" EXACT [] xref: BTO:0000961 xref: EFO:0000108 xref: FMA:77624 xref: GAID:633 xref: HOG:0000033 xref: MA:0000194 xref: MIAA:0000116 xref: ncithesaurus:Olfactory_Bulb xref: NIF_GrossAnatomy:birnlex_1137 xref: TAO:0000402 xref: ZFA:0000402 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0002265 name: olfactory tract alt_id: UBERON:FMA_77626-MA_0000975 def: "Tract of brain which is continuous with olfactory bulb and the cerebral cortex." [Wikipedia:Olfactory_tract] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Olfactory tract" EXACT [] xref: BTO:0003647 xref: FMA:77626 xref: MA:0000975 xref: ncithesaurus:Olfactory_Tract xref: NIF_GrossAnatomy:birnlex_1663 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002266 name: anterior olfactory nucleus alt_id: UBERON:FMA_77628-MA_0000968 def: "." [Wikipedia:Anterior_olfactory_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Anterior olfactory nucleus" EXACT [] synonym: "Retrobulbar nucleus [A8]" EXACT [] synonym: "retrobulbar nucleus [a8]" EXACT [] xref: BTO:0003649 xref: FMA:77628 xref: MA:0000968 xref: ncithesaurus:Anterior_Olfactory_Nucleus xref: NIF_GrossAnatomy:birnlex_1085 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002267 name: laterodorsal tegmental nucleus alt_id: UBERON:FMA_77654-MA_0001016 def: "." [Wikipedia:Laterodorsal_tegmental_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Laterodorsal tegmental nucleus" EXACT [] synonym: "Lateroposterior tegmental nucleus" EXACT [] synonym: "lateroposterior tegmental nucleus" EXACT [] xref: BTO:0004016 xref: FMA:77654 xref: MA:0001016 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002268 name: olfactory organ alt_id: UBERON:FMA_77659-XAO_0000273 comment: This class was created automatically from a combination of ontologies synonym: "Olfactory organ" EXACT [] xref: BTO:0001772 xref: FMA:77659 xref: HOG:0000287 xref: XAO:0000273 is_a: UBERON:0000020 ! sense organ relationship: develops_from UBERON:0003050 ! olfactory placode relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002269 name: pupillary membrane alt_id: UBERON:FMA_77663-MA_0001293 def: "Fetal membrane that crosses the pupil." [UBERON:cjm] comment: This class was created automatically from a combination of ontologies synonym: "Pupillary membrane" EXACT [] xref: FMA:77663 xref: MA:0001293 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001771 ! pupil [Term] id: UBERON:0002270 name: hyaloid artery alt_id: UBERON:FMA_77670-ZFA_0005045 def: "Artery that is internal to the eye. Isogai et al. 2001." [Wikipedia:Hyaloid_artery, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hyaloid artery" EXACT [] xref: FMA:77670 xref: TAO:0005045 xref: ZFA:0005045 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002271 name: periventricular zone of hypothalamus alt_id: UBERON:FMA_77682-MA_0000846 comment: This class was created automatically from a combination of ontologies synonym: "hypothalamus periventricular zone" EXACT [] synonym: "Periventricular zone of hypothalamus" EXACT [] xref: FMA:77682 xref: HOG:0000623 xref: MA:0000846 is_a: UBERON:0000064 ! organ part is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002272 name: medial zone of hypothalamus alt_id: UBERON:FMA_77683-MA_0000837 comment: This class was created automatically from a combination of ontologies synonym: "hypothalamus medial zone" EXACT [] synonym: "Medial zone of hypothalamus" EXACT [] xref: FMA:77683 xref: MA:0000837 is_a: UBERON:0000064 ! organ part is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002273 name: lateral zone of hypothalamus alt_id: UBERON:FMA_77684-MA_0000833 comment: This class was created automatically from a combination of ontologies synonym: "hypothalamus lateral zone" EXACT [] synonym: "Lateral zone of hypothalamus" EXACT [] xref: FMA:77684 xref: MA:0000833 is_a: UBERON:0000064 ! organ part is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002274 name: perifornical nucleus alt_id: UBERON:FMA_77688-MA_0000836 comment: This class was created automatically from a combination of ontologies synonym: "Perifornical nucleus" EXACT [] xref: FMA:77688 xref: MA:0000836 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus [Term] id: UBERON:0002275 name: reticular formation alt_id: UBERON:FMA_77719-ZFA_0000421 def: "." [Wikipedia:Reticular_formation] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Reticular formation" EXACT [] xref: FMA:77719 xref: GAID:588 xref: TAO:0000421 xref: ZFA:0000421 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002276 name: lamina of spiral limbus alt_id: UBERON:FMA_77721-MA_0001191 def: "." [Wikipedia:Limbus_laminae_spiralis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lamina of spiral limbus" EXACT [] synonym: "limbus lamina spiralis" EXACT [] synonym: "Limbus laminae spiralis" EXACT [] synonym: "limbus laminae spiralis" EXACT [] synonym: "Spiral limbus lamina" EXACT [] synonym: "spiral limbus lamina" EXACT [] xref: FMA:77721 xref: MA:0001191 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002277 name: spiral sulcus alt_id: UBERON:FMA_77744-MA_0001195 comment: This class was created automatically from a combination of ontologies synonym: "Spiral sulcus" EXACT [] synonym: "Sulcus spiralis" EXACT [] synonym: "sulcus spiralis" EXACT [] xref: FMA:77744 xref: MA:0001195 is_a: UBERON:0000093 ! sulcus is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002278 name: perilymphatic space alt_id: UBERON:FMA_77745-MA_0000248 comment: This class was created automatically from a combination of ontologies synonym: "perilymphatic channel" EXACT [] synonym: "Perilymphatic space" EXACT [] xref: BTO:0002083 xref: FMA:77745 xref: MA:0000248 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0002279 name: vestibular aqueduct alt_id: UBERON:FMA_77821-MA_0001186 def: "." [Wikipedia:Vestibular_aqueduct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Vestibular aqueduct" EXACT [] xref: FMA:77821 xref: GAID:885 xref: MA:0001186 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002280 name: otolith alt_id: UBERON:FMA_77826-ZFA_0001617 def: "MERGED DEFINITION: TARGET DEFINITION: Portion of organism substance composed of calcium carbonate located in the otolith organ. -------------------- SOURCE DEFINITION: Brightly refractile stone-like organ within the otic vesicle and positioned over a sensory macula; two form in each vesicle during the late segmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for otolith by T. Whitfield.)" [Wikipedia:Otolith, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "immature otolith" RELATED [] synonym: "immature otoliths" RELATED [] synonym: "Otolith" EXACT [] xref: FMA:77826 xref: ncithesaurus:Otolith xref: TAO:0001621 xref: ZFA:0001617 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0001846 ! internal ear [Term] id: UBERON:0002281 name: vestibular membrane of cochlear duct alt_id: UBERON:FMA_77829-MA_0001200 def: "a membrane inside the cochlea of the inner ear. It separates scala media from scala vestibuli. Together with the basilar membrane it creates a compartment in the cochlea filled with endolymph, which is important for the function of the organ of Corti. It primarily functions as a diffusion barrier, allowing nutrients to travel from the perilymph to the endolymph of the membranous labyrinth. Histologically, the membrane is composed of two layers of flattened epithelium, separated by a basal lamina. Its structure suggests that its function is transport of fluid and electrolytes." [Wikipedia:Reissner's_membrane] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Reissner's membrane" EXACT [] synonym: "reissner's membrane" RELATED [] synonym: "Superior wall of cochlear duct" EXACT [] synonym: "superior wall of cochlear duct" EXACT [] synonym: "vestibular membrane" EXACT [] synonym: "Vestibular membrane of cochlear duct" EXACT [] synonym: "Vestibular membrane of Reissner" EXACT [] synonym: "vestibular membrane of reissner" EXACT [] xref: FMA:77829 xref: MA:0001200 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002282 name: stria vascularis of cochlear duct alt_id: UBERON:FMA_77832-MA_0001198 def: "." [Wikipedia:Stria_vascularis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "stria vascularis" EXACT [] synonym: "Stria vascularis of cochlea" EXACT [] synonym: "stria vascularis of cochlea" EXACT [] synonym: "Stria vascularis of cochlear duct" EXACT [] xref: BTO:0001819 xref: EFO:0001644 xref: FMA:77832 xref: GAID:875 xref: MA:0001198 xref: NIF_GrossAnatomy:birnlex_2525 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0002283 name: nail matrix alt_id: UBERON:FMA_77856-MA_0002707 def: "." [Wikipedia:Nail_matrix] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Nail matrix" EXACT [] xref: FMA:77856 xref: MA:0002707 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001705 ! nail [Term] id: UBERON:0002284 name: hyponychium alt_id: UBERON:FMA_77860-MA_0002705 def: "." [Wikipedia:Hyponychium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hyponychium" EXACT [] xref: FMA:77860 xref: MA:0002705 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001705 ! nail relationship: part_of UBERON:0002097 ! skin [Term] id: UBERON:0002285 name: lateral ventricle alt_id: UBERON:FMA_78448-MA_0000192 def: "The two lateral ventricles are a cavity in each of the cerebral hemispheres derived from the cavity of the embryonic neural tube. They are separated from each other by the septum pellucidum, and each communicates with the third ventricle by the foramen of Monro, through which also the choroid plexuses of the lateral ventricles become continuous with that of the third ventricle[GO]." [Wikipedia:Lateral_ventricle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lateral ventricle" EXACT [] xref: BTO:0000879 xref: EFO:0001961 xref: EHDAA:3502 xref: EHDAA:6576 xref: FMA:78448 xref: GAID:611 xref: MA:0000192 xref: ncithesaurus:Lateral_Ventricle xref: NIF_GrossAnatomy:birnlex_1263 xref: OpenCyc:Mx4rvYsFdZwpEbGdrcN5Y29ycA xref: ZFA:0000696 is_a: UBERON:0002300 ! ventricle relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0002286 name: third ventricle alt_id: UBERON:FMA_78454-MA_0000182-ZFA_0000161 def: "Fluid-filled brain cavity. Kimmel et al, 1995." [Wikipedia:Third_ventricle, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "3rd ventricle" RELATED [] synonym: "diencephalic ventricle" RELATED [] synonym: "diencephalic vesicle" RELATED [] synonym: "Third ventricle" EXACT [] xref: FMA:78454 xref: GAID:614 xref: HOG:0000007 xref: MA:0000182 xref: ncithesaurus:Third_Ventricle_of_Brain xref: NIF_GrossAnatomy:birnlex_1658 xref: NIF_GrossAnatomy:birnlex_714 xref: OpenCyc:Mx4rvakhcJwpEbGdrcN5Y29ycA xref: TAO:0000161 xref: ZFA:0000161 is_a: UBERON:0002300 ! ventricle relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0002287 name: optic recess of third ventricle alt_id: UBERON:FMA_78455-ZFA_0000049 def: "." [Wikipedia:Optic_recess] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Optic recess" EXACT [] synonym: "optic recess" EXACT [] synonym: "Optic recess of third ventricle" EXACT [] synonym: "Preoptic recess" EXACT [] synonym: "preoptic recess" EXACT [] synonym: "Supraoptic recess" EXACT [] synonym: "supraoptic recess" EXACT [] xref: EHDAA:1343 xref: EHDAA:1973 xref: EHDAA:2649 xref: EHDAA:3478 xref: FMA:78455 xref: HOG:0000595 xref: TAO:0000049 xref: ZFA:0000049 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0002288 name: choroid plexus of third ventricle alt_id: UBERON:FMA_78462-MA_0000879 comment: This class was created automatically from a combination of ontologies synonym: "3rd ventricle choroid plexus" RELATED [] synonym: "Chorioid plexus of third ventricle" EXACT [] synonym: "chorioid plexus of third ventricle" EXACT [] synonym: "Choroid plexus of third ventricle" EXACT [] synonym: "third ventricle choroid plexus" EXACT [] xref: FMA:78462 xref: MA:0000879 xref: ZFA:0001444 is_a: UBERON:0001886 ! choroid plexus intersection_of: UBERON:0001886 ! choroid plexus intersection_of: part_of UBERON:0002286 ! third ventricle relationship: part_of UBERON:0002286 ! third ventricle [Term] id: UBERON:0002289 name: cerebral aqueduct alt_id: UBERON:FMA_78467-MA_0000208 def: "." [Wikipedia:Cerebral_aqueduct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Aqueduct (Sylvius)" EXACT [] synonym: "aqueduct (sylvius)" EXACT [] synonym: "Aqueduct of midbrain" EXACT [] synonym: "aqueduct of midbrain" EXACT [] synonym: "Aqueduct of Sylvius" EXACT [] synonym: "aqueduct of sylvius" EXACT [] synonym: "Cerebral aqueduct" EXACT [] synonym: "Cerebral aqueduct of Sylvius" EXACT [] synonym: "cerebral aqueduct of sylvius" EXACT [] xref: EHDAA:3696 xref: FMA:78467 xref: GAID:583 xref: HOG:0000832 xref: MA:0000208 xref: ncithesaurus:Aqueduct_of_Sylvius xref: NIF_GrossAnatomy:birnlex_1261 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0002290 name: choroid plexus of fourth ventricle alt_id: UBERON:FMA_78492-MA_0000983 comment: This class was created automatically from a combination of ontologies synonym: "4th ventricle choroid plexus" RELATED [] synonym: "Chorioid plexus of fourth ventricle" EXACT [] synonym: "chorioid plexus of fourth ventricle" EXACT [] synonym: "Choroid plexus of fourth ventricle" EXACT [] synonym: "fourth ventricle choroid plexus" EXACT [] xref: FMA:78492 xref: MA:0000983 xref: ZFA:0001446 is_a: UBERON:0001886 ! choroid plexus intersection_of: UBERON:0001886 ! choroid plexus intersection_of: part_of UBERON:0002422 ! fourth ventricle relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002291 name: central canal alt_id: UBERON:0002220 alt_id: UBERON:FMA_75364-MA_0001117 alt_id: UBERON:FMA_78497-ZFA_0000938 def: "A cerebrospinal fluid-filled space that runs longitudinally through the length of the entire spinal cord. The central canal is contiguous with the ventricular system of the brain. The central canal represents the adult remainder of the neural tube." [Wikipedia:Central_canal] comment: previously mapped to FMA:75364 subset: uberon_slim synonym: "Central canal" EXACT [] synonym: "central canal of spinal cord" EXACT [] synonym: "neural lumen" RELATED [] synonym: "spinal cord central canal" EXACT [] xref: FMA:78497 xref: MA:0001117 xref: ncithesaurus:Central_Canal xref: NIF_GrossAnatomy:birnlex_1409 xref: TAO:0000938 xref: ZFA:0000938 is_a: UBERON:0002553 ! anatomical cavity relationship: develops_from UBERON:0001049 ! neural tube relationship: has_part UBERON:0001359 ! cerebrospinal fluid relationship: surrounded_by UBERON:0002240 ! spinal cord [Term] id: UBERON:0002292 name: joint of head of rib alt_id: UBERON:FMA_7951-MA_0001510 def: "." [Wikipedia:Costovertebral_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Costal head joint" EXACT [] synonym: "costal head joint" EXACT [] synonym: "Costocorporeal joint" EXACT [] synonym: "costocorporeal joint" EXACT [] synonym: "Costovertebral joint" EXACT [] synonym: "costovertebral joint" EXACT [] synonym: "Joint of costal head" EXACT [] synonym: "joint of costal head" EXACT [] synonym: "Joint of head of rib" EXACT [] xref: FMA:7951 xref: MA:0001510 xref: ncithesaurus:Costovertebral_Joint is_a: UBERON:0002001 ! joint of rib is_a: UBERON:0002217 ! synovial joint intersection_of: UBERON:0000982 ! joint intersection_of: part_of UBERON:0002230 ! head of rib [Term] id: UBERON:0002293 name: costochondral joint alt_id: UBERON:FMA_7956-MA_0001509 def: "." [Wikipedia:Costochondral_joint] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Articulatio costochondralis" EXACT [] synonym: "articulatio costochondralis" EXACT [] synonym: "Chondrocostal synchondrosis" EXACT [] synonym: "chondrocostal synchondrosis" EXACT [] synonym: "Costochondral joint" EXACT [] synonym: "Costochondral junction" EXACT [] synonym: "costochondral junction" EXACT [] synonym: "Costochondral synchondrosis" EXACT [] synonym: "costochondral synchondrosis" EXACT [] xref: FMA:7956 xref: MA:0001509 xref: ncithesaurus:Costochondral_Joint xref: OpenCyc:Mx4rvfy27JwpEbGdrcN5Y29ycA is_a: UBERON:0002001 ! joint of rib is_a: UBERON:0002215 ! synchondrosis [Term] id: UBERON:0002294 name: biliary system alt_id: UBERON:FMA_79646-MA_0001273 def: "Anatomical system that consists of the organs and ducts (bile ducts, gallbladder, and associated structures) that are involved in the production and transportation of bile." [Wikipedia:Biliary_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Biliary apparatus" EXACT [] synonym: "biliary apparatus" EXACT [] synonym: "Biliary system" EXACT [] synonym: "Biliary tract" EXACT [] synonym: "biliary tract" EXACT [] xref: FMA:79646 xref: GAID:279 xref: MA:0001273 xref: ncithesaurus:Biliary_Tract is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system relationship: part_of UBERON:0002423 ! hepatobiliary system [Term] id: UBERON:0002295 name: scala media alt_id: UBERON:FMA_79789-MA_0002458 def: "." [Wikipedia:Scala_media] comment: This class was created automatically from a combination of ontologies. TODO: check w wikipedia, cochlear duct subset: uberon_slim synonym: "cochlear duct" RELATED [] synonym: "Scala media" EXACT [] xref: FMA:79789 xref: MA:0002458 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001844 ! cochlea [Term] id: UBERON:0002296 name: dorsal mesentery alt_id: UBERON:FMA_79795-ZFA_0005130 def: "The mesentery that originates from the dorsal side of the peritoneal cavity." [Wikipedia:Dorsal_mesentery, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Dorsal mesentery" EXACT [] xref: EHDAA:3019 xref: EHDAA:3033 xref: EHDAA:3921 xref: EHDAA:3934 xref: EHDAA:3957 xref: EHDAA:3971 xref: FMA:79795 xref: TAO:0005130 xref: ZFA:0005130 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002095 ! mesentery [Term] id: UBERON:0002297 name: cerumen alt_id: UBERON:FMA_79869-MA_0002506 def: "." [Wikipedia:Cerumen] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cerumen" EXACT [] synonym: "Ear wax" EXACT [] synonym: "ear wax" EXACT [] xref: ENVO:02000028 xref: FMA:79869 xref: GAID:1158 xref: MA:0002506 xref: ncithesaurus:Cerumen is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0002298 name: brainstem alt_id: UBERON:FMA_79876-MA_0000169 def: "." [Wikipedia:Brainstem] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "brain stem" RELATED [] synonym: "Brainstem" EXACT [] xref: FMA:79876 xref: HOG:0001457 xref: MA:0000169 xref: NIF_GrossAnatomy:birnlex_1565 xref: ZFA:0001707 is_a: UBERON:0002616 ! regional part of brain relationship: part_of UBERON:0000955 ! brain [Term] id: UBERON:0002299 name: alveolus of lung alt_id: UBERON:FMA_82493-MA_0000420 def: "Spherical outcropping of the respiratory bronchioles and primary site of gas exchange with the blood. Alveoli are particular to mammalian lungs. Different structures are involved in gas exchange in other vertebrates[WP]." [Wikipedia:Pulmonary_alveolus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "alveolus" RELATED [] synonym: "lung alveolus" EXACT [] synonym: "pulmonary alveolus" RELATED [] xref: BTO:0000060 xref: HOG:0001445 xref: MA:0000420 is_a: UBERON:0003215 ! alveolus intersection_of: UBERON:0003215 ! alveolus intersection_of: part_of UBERON:0002048 ! lung relationship: part_of UBERON:0002048 ! lung [Term] id: UBERON:0002300 name: ventricle alt_id: UBERON:FMA_82553-MA_0000818 def: "A chamber of an organ with cavitated organ parts. Examples: right ventricle of heart, lateral ventricle of brain." [Wikipedia:Ventricle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "brain ventricle" EXACT [] synonym: "Ventricle" EXACT [] xref: BTO:0001442 xref: EFO:0000317 xref: EHDAA:1912 xref: FMA:82553 xref: MA:0000818 xref: MAT:0000497 xref: ncithesaurus:Ventricle_Brain is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002301 name: layer of neocortex alt_id: UBERON:FMA_83138-MA_0000186 comment: This class was created automatically from a combination of ontologies synonym: "cerebral cortex layer" RELATED [] synonym: "Layer of neocortex" EXACT [] synonym: "Neocortex layer" EXACT [] synonym: "neocortex layer" EXACT [] xref: FMA:83138 xref: MA:0000186 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0001950 ! neocortex [Term] id: UBERON:0002302 name: myocardium of atrium alt_id: UBERON:FMA_83509-MA_0000081-ZFA_0001374 comment: This class was created automatically from a combination of ontologies synonym: "Atrial myocardium" EXACT [] synonym: "atrial myocardium" EXACT [] synonym: "atrium myocardium" EXACT [] synonym: "Myocardium of atrium" EXACT [] xref: FMA:83509 xref: HOG:0000602 xref: MA:0000081 xref: TAO:0001374 xref: ZFA:0001374 is_a: UBERON:0002349 ! myocardium intersection_of: UBERON:0002349 ! myocardium intersection_of: part_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002349 ! myocardium [Term] id: UBERON:0002303 name: juxtaglomerular complex alt_id: UBERON:FMA_83599-MA_0002546 def: "." [Wikipedia:Juxtaglomerular_apparatus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Juxtaglomerular apparatus" EXACT [] synonym: "juxtaglomerular apparatus" RELATED [] synonym: "Juxtaglomerular complex" EXACT [] xref: FMA:83599 xref: GAID:432 xref: MA:0002546 xref: ncithesaurus:Juxtaglomerular_Apparatus is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001225 ! cortex of kidney [Term] id: UBERON:0002304 name: layer of dentate gyrus alt_id: UBERON:FMA_83678-MA_0002429 comment: This class was created automatically from a combination of ontologies synonym: "Dentate gyrus layer" EXACT [] synonym: "dentate gyrus layer" EXACT [] synonym: "Layer of dentate gyrus" EXACT [] xref: FMA:83678 xref: MA:0002429 is_a: UBERON:0000064 ! organ part is_a: UBERON:0003876 ! implied link automatically realized ! hippocampal region relationship: part_of UBERON:0001885 ! dentate gyrus of hippocampal formation [Term] id: UBERON:0002305 name: layer of hippocampus alt_id: UBERON:FMA_83679-MA_0002427 comment: This class was created automatically from a combination of ontologies synonym: "Hippocampus layer" EXACT [] synonym: "hippocampus layer" EXACT [] synonym: "Layer of hippocampus" EXACT [] xref: FMA:83679 xref: MA:0002427 is_a: UBERON:0000064 ! organ part is_a: UBERON:0000119 ! implied link automatically realized ! cell layer is_a: UBERON:0003876 ! implied link automatically realized ! hippocampal region intersection_of: UBERON:0000119 ! cell layer intersection_of: part_of UBERON:0001954 ! hippocampus relationship: part_of UBERON:0001954 ! hippocampus [Term] id: UBERON:0002306 name: nasal mucus alt_id: UBERON:FMA_83688-MA_0002535 def: "." [Wikipedia:Nasal_mucus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Nasal mucus" EXACT [] xref: FMA:83688 xref: MA:0002535 xref: ncithesaurus:Nasal_Mucus is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0002307 name: choroid plexus of lateral ventricle alt_id: UBERON:FMA_83711-MA_0000961 comment: This class was created automatically from a combination of ontologies synonym: "Chorioid plexus of lateral ventricle" EXACT [] synonym: "chorioid plexus of lateral ventricle" EXACT [] synonym: "Choroid plexus of lateral ventricle" EXACT [] synonym: "lateral ventricle choroid plexus" EXACT [] xref: FMA:83711 xref: MA:0000961 xref: ZFA:0001447 is_a: UBERON:0001886 ! choroid plexus intersection_of: UBERON:0001886 ! choroid plexus intersection_of: part_of UBERON:0002285 ! lateral ventricle relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0002308 name: nucleus of brain alt_id: UBERON:FMA_83840-MA_0000811 def: "Nucleus of neuraxis which is located within the brain. Example: pontobulbar nucleus, globose nucleus[FMA]. brain structure consisting of a relatively compact cluster of neurons. It is one of the two most common forms of nerve cell organization, the other being layered structures such as the cerebral cortex or cerebellar cortex. In anatomical sections, a nucleus shows up as a region of gray matter, often bordered by white matter. The vertebrate brain contains hundreds of distinguishable nuclei, varying widely in shape and size. A nucleus may itself have a complex internal structure, with multiple types of neurons arranged in clumps (subnuclei) or layers.[Wikipedia]" [FMA:83840, Wikipedia:Nucleus_(neuroanatomy)] comment: This class was created automatically from a combination of ontologies synonym: "Brain nucleus" EXACT [] synonym: "brain nucleus" EXACT [] synonym: "Nucleus of brain" EXACT [] xref: FMA:83840 xref: MA:0000811 xref: ncithesaurus:Brain_Nucleus is_a: UBERON:0000125 ! neural nucleus relationship: part_of UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002309 name: medial longitudinal fasciculus alt_id: UBERON:FMA_83846-ZFA_0000543 def: "." [Wikipedia:Medial_longitudinal_fasciculus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Medial longitudinal fasciculus" EXACT [] xref: BTO:0003951 xref: FMA:83846 xref: TAO:0000543 xref: ZFA:0000543 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002310 name: fimbria of hippocampus alt_id: UBERON:FMA_83866-MA_0000949 comment: This class was created automatically from a combination of ontologies synonym: "fimbria hippocampus" EXACT [] synonym: "Fimbria of hippocampus" EXACT [] synonym: "Neuraxis fimbria" EXACT [] synonym: "neuraxis fimbria" EXACT [] xref: FMA:83866 xref: MA:0000949 xref: NIF_GrossAnatomy:birnlex_1502 is_a: UBERON:0000064 ! organ part is_a: UBERON:0003876 ! implied link automatically realized ! hippocampal region relationship: part_of UBERON:0001954 ! hippocampus [Term] id: UBERON:0002311 name: nodulus of cerebellum alt_id: UBERON:FMA_83882-MA_0001007 comment: This class was created automatically from a combination of ontologies synonym: "cerebellum lobule X" EXACT [] synonym: "cerebellum lobule x" EXACT [] synonym: "Neuraxis nodulus" EXACT [] synonym: "neuraxis nodulus" EXACT [] synonym: "nodulus" RELATED [] synonym: "Nodulus of cerebellum" EXACT [] xref: FMA:83882 xref: MA:0001007 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002312 name: pyramis of vermis of cerebellum alt_id: UBERON:FMA_83888-MA_0001005 comment: This class was created automatically from a combination of ontologies synonym: "cerebellum lobule VIII" EXACT [] synonym: "cerebellum lobule viii" EXACT [] synonym: "Neuraxis pyramis" EXACT [] synonym: "neuraxis pyramis" EXACT [] synonym: "Pyramis of vermis of cerebellum" EXACT [] synonym: "pyramus" RELATED [] xref: FMA:83888 xref: MA:0001005 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002313 name: pyramidal layer of hippocampus alt_id: UBERON:FMA_83895-MA_0000956 comment: This class was created automatically from a combination of ontologies synonym: "hippocampus pyramidal layer" EXACT [] synonym: "hippocampus stratum pyramidale" RELATED [] synonym: "Pyramidal layer of hippocampus" EXACT [] xref: FMA:83895 xref: MA:0000956 is_a: UBERON:0002305 ! layer of hippocampus [Term] id: UBERON:0002314 name: midbrain tectum alt_id: UBERON:FMA_83902-MA_0000211 def: "." [Wikipedia:Midbrain_tectum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Midbrain tectum" EXACT [] synonym: "Neuraxis tectum" EXACT [] synonym: "neuraxis tectum" EXACT [] synonym: "tectum" EXACT [] xref: EFO:0000920 xref: FMA:83902 xref: GO:0043676 xref: MA:0000211 xref: MAT:0000451 xref: NIF_GrossAnatomy:birnlex_1032 is_a: UBERON:0002950 ! regional part of midbrain relationship: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0002315 name: gray matter of spinal cord alt_id: UBERON:FMA_83926-MA_0000002 comment: This class was created automatically from a combination of ontologies synonym: "Gray matter of spinal cord" EXACT [] synonym: "Grey matter of spinal cord" EXACT [] synonym: "grey matter of spinal cord" EXACT [] synonym: "Grey substance of spinal cord" EXACT [] synonym: "grey substance of spinal cord" EXACT [] synonym: "spinal cord grey matter" EXACT [] xref: FMA:83926 xref: MA:0000002 is_a: UBERON:0002020 ! gray matter of neuraxis intersection_of: UBERON:0002020 ! gray matter of neuraxis intersection_of: part_of UBERON:0002240 ! spinal cord relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002316 name: white matter of neuraxis alt_id: UBERON:FMA_83929-MA_0001135 def: "Heterogeneous cluster of neurites in the brain and the spinal cord." [Wikipedia:White_matter] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "White matter" EXACT [] synonym: "white matter" EXACT [] synonym: "White matter of neuraxis" EXACT [] synonym: "White substance" EXACT [] synonym: "white substance" EXACT [] xref: FMA:83929 xref: MA:0001135 xref: ncithesaurus:White_Matter xref: ZFA:0001682 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0002317 name: white matter of cerebellum alt_id: UBERON:FMA_83943-MA_0002430 comment: This class was created automatically from a combination of ontologies synonym: "cerebellum white matter" EXACT [] synonym: "White matter of cerebellum" EXACT [] xref: FMA:83943 xref: MA:0002430 xref: ncithesaurus:Cerebellum_White_Matter is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter intersection_of: UBERON:0002316 ! white matter of neuraxis intersection_of: part_of UBERON:0002037 ! cerebellum relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002318 name: white matter of spinal cord alt_id: UBERON:FMA_83945-MA_0000910 comment: This class was created automatically from a combination of ontologies synonym: "spinal cord white matter" EXACT [] synonym: "White matter of spinal cord" EXACT [] xref: FMA:83945 xref: MA:0000910 is_a: UBERON:0002316 ! white matter of neuraxis intersection_of: UBERON:0002316 ! white matter of neuraxis intersection_of: part_of UBERON:0002240 ! spinal cord relationship: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0002319 name: mesangium alt_id: UBERON:FMA_84139-MA_0002617 def: "inner layer of the glomerulus, within the basement membrane surrounding the glomerular capillaries." [Wikipedia:Mesangium] comment: WP considers this the same as glomerular mesangium subset: uberon_slim synonym: "Mesangium" EXACT [] xref: BTO:0002494 xref: FMA:84139 xref: MA:0002617 xref: ncithesaurus:Mesangium is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0002320 name: glomerular mesangium alt_id: UBERON:FMA_84140-MA_0002606 def: "A thin membrane which helps to support the capillary loops in a renal glomerulus. It is connective tissue composed of mesangial cells - myofibroblasts phenotypically related to vascular smooth muscle cells (MUSCLE, SMOOTH, VASCULAR), PHAGOCYTES and the mesangial EXTRACELLULAR MATRIX." [MESH:A.05.810.453.736.520.380, Wikipedia:Glomerular_mesangium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Glomerular mesangium" EXACT [] xref: FMA:84140 xref: GAID:430 xref: MA:0002606 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002319 ! mesangium [Term] id: UBERON:0002321 name: extraglomerular mesangium alt_id: UBERON:FMA_84141-MA_0002602 comment: This class was created automatically from a combination of ontologies synonym: "Extraglomerular mesangium" EXACT [] xref: FMA:84141 xref: MA:0002602 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001229 ! renal corpuscle relationship: part_of UBERON:0002303 ! juxtaglomerular complex relationship: part_of UBERON:0002319 ! mesangium [Term] id: UBERON:0002322 name: periventricular nucleus alt_id: UBERON:FMA_84354-ZFA_0000260 def: "." [Wikipedia:Periventricular_nucleus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Periventricular nucleus" EXACT [] xref: FMA:84354 xref: TAO:0000260 xref: ZFA:0000260 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002323 name: body cavity alt_id: UBERON:0000169 alt_id: UBERON:FMA_85006-MA_0002447-ZFA_0001438 def: "fluid-filled space between epidermis and outer lining of gut cavity." [Wikipedia:Body_cavity] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Body cavity" EXACT [] synonym: "coelom" EXACT [] synonym: "coelomic cavity" EXACT [] synonym: "ventral body cavity" NARROW [] xref: BTO:0001707 xref: FBbt:00005060 xref: FMA:85006 xref: galen:BodyCavity xref: MA:0002447 xref: ncithesaurus:Cavity xref: TAO:0001438 xref: ZFA:0001438 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0002324 name: muscle of back alt_id: UBERON:FMA_85216-MA_0000496 comment: This class was created automatically from a combination of ontologies synonym: "Back muscle" EXACT [] synonym: "back muscle" EXACT [] synonym: "Muscle of back" EXACT [] xref: FMA:85216 xref: MA:0000496 is_a: UBERON:0001774 ! muscle of trunk intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001137 ! back relationship: part_of UBERON:0001137 ! back [Term] id: UBERON:0002325 name: epithelium of urethra alt_id: UBERON:FMA_85275-MA_0001686 comment: This class was created automatically from a combination of ontologies synonym: "Epithelium of urethra" EXACT [] synonym: "urethra epithelium" EXACT [] synonym: "Urethral epithelium" EXACT [] synonym: "urethral epithelium" RELATED [] xref: FMA:85275 xref: MA:0001686 xref: ncithesaurus:Urethra_Epithelium is_a: UBERON:0000483 ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000057 ! urethra [Term] id: UBERON:0002326 name: lamina propria of urethra alt_id: UBERON:FMA_85276-MA_0001689 comment: This class was created automatically from a combination of ontologies synonym: "Lamina propria of urethra" EXACT [] synonym: "urethra lamina propria" EXACT [] synonym: "urethral lamina propria" RELATED [] xref: FMA:85276 xref: MA:0001689 is_a: UBERON:0000030 ! lamina propria intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0000057 ! urethra relationship: part_of UBERON:0001008 ! urinary system [Term] id: UBERON:0002327 name: trunk of intercostal nerve alt_id: UBERON:FMA_85315-MA_0001176 comment: This class was created automatically from a combination of ontologies synonym: "intercostal nerve trunk" EXACT [] synonym: "Intercostal neural trunk" EXACT [] synonym: "intercostal neural trunk" EXACT [] synonym: "Trunk of intercostal nerve" EXACT [] xref: FMA:85315 xref: MA:0001176 is_a: UBERON:0001147 ! trunk of peripheral nerve [Term] id: UBERON:0002328 name: notochord alt_id: UBERON:FMA_85521-XAO_0000055-ZFA_0000135 def: "A longitudinal flexible rod of cells that in the embryo forms the supporting axis of the body. It degenerates, beginning anteriorly, at NF stage 46. Its posterior portion is greatly reduced by NF stage 55 and the entire structure is gone by NF stage 65. // Rod-like principal supportive element of the embryo and larva, present in the midline just ventral to the neural tube, and differentiating during the segmentation period to form large vacuolated epithelial cells and a surrounding a sheath of fibrous and elastic layers. Layering of the sheath may differ in structure, thickness and development among groups; in cypriniforms there are actually three very thin layers to the sheath. A functional, well developed notochord is present throughout life in certain basal fish groups but not in cypriniforms. Kimmel et al, 1995." [ISBN:0815318960, NLM:notochord, Wikipedia:Notochord, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Chordamesoderm" EXACT [] synonym: "chordamesoderm" EXACT [] synonym: "Notochord" EXACT [] synonym: "notocord" RELATED [] xref: AAO:0000327 xref: BTO:0001768 xref: EHDAA:1241 xref: EHDAA:6021 xref: FMA:85521 xref: GAID:1311 xref: HOG:0000199 xref: MAT:0000281 xref: ncithesaurus:Notochord xref: TAO:0000135 xref: XAO:0000055 xref: ZFA:0000135 is_a: UBERON:0000479 ! portion of tissue is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: develops_from UBERON:0003068 ! axial mesoderm relationship: part_of UBERON:0000922 ! embryo relationship: part_of UBERON:0002021 ! occipital lobe relationship: part_of UBERON:0002543 ! median fin skeleton [Term] id: UBERON:0002329 name: somite alt_id: UBERON:FMA_85522-MIAA_0000068-XAO_0000058-ZFA_0000155 def: "Portion of mesoderm distributed along the two sides of the neural tube and that will eventually become dermis (dermatome), skeletal muscle (myotome), and vertebrae (sclerotome)[WP]. In Zebrafish: Any of the approximately 45 bilaterally paired blocks of mesoderm cells, lying on either side of the notochord and neural tube, and forming sequentially starting at the head during development of the embryo. Together they give rise to the axial skeleton (from the sclerotome), associated musculature (from the myotome), and dermis (from the dermatome). // Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes. Kimmel et al, 1995." [OMD:somite, Wikipedia:Somite, XB:curator, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Somite" EXACT [] synonym: "somites" RELATED [] synonym: "somitic mesoderm" RELATED [] xref: BTO:0001558 xref: EHDAA:366 xref: EHDAA:699 xref: FMA:85522 xref: GAID:1306 xref: HOG:0000191 xref: MAT:0000068 xref: MIAA:0000068 xref: ncithesaurus:Somite xref: TAO:0000155 xref: XAO:0000058 xref: ZFA:0000155 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0003059 ! presomitic mesoderm relationship: part_of UBERON:0000926 ! mesoderm relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0002330 name: exocrine system alt_id: UBERON:FMA_85539-MA_0002411 def: "Anatomical system that consists of the glands and parts of glands that produce exocrine secretions and help to integrate and control bodily metabolic activity. Exocrine glands are glands that secrete their products (hormones) into ducts (duct glands). They are the counterparts to endocrine glands, which secrete their products (hormones) directly into the bloodstream (ductless glands) or release hormones (paracrines) that affect only target cells nearby the release site. [Wikipedia]." [Wikipedia:Exocrine_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Exocrine system" EXACT [] xref: FMA:85539 xref: MA:0002411 xref: ncithesaurus:Exocrine_System is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system [Term] id: UBERON:0002331 name: umbilical cord alt_id: UBERON:FMA_85541-MIAA_0000280 def: "." [Wikipedia:Umbilical_cord] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "connecting stalk" RELATED [] synonym: "Umbilical cord" EXACT [] xref: BTO:0001415 xref: EFO:0001415 xref: FMA:85541 xref: GAID:517 xref: MAT:0000280 xref: MIAA:0000280 xref: ncithesaurus:Umbilical_Cord is_a: UBERON:0000478 ! extraembryonic structure [Term] id: UBERON:0002333 name: pulmonary trunk alt_id: UBERON:FMA_8612-MA_0002033 def: "Pulmonary arterial trunk which is continuous with the right ventricle." [Wikipedia:Pulmonary_trunk] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pulmonary artery (trunk)" EXACT [] synonym: "pulmonary artery (trunk)" EXACT [] synonym: "Pulmonary trunk" EXACT [] synonym: "Trunk of pulmonary arterial tree" EXACT [] synonym: "trunk of pulmonary arterial tree" EXACT [] xref: EFO:0001399 xref: FMA:8612 xref: HOG:0001134 xref: MA:0002033 xref: OpenCyc:Mx4rv-6d0ZwpEbGdrcN5Y29ycA is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0002334 name: submandibular duct alt_id: UBERON:FMA_86266-MA_0002698 def: "." [Wikipedia:Submandibular_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Submandibular duct" EXACT [] xref: FMA:86266 xref: MA:0002698 xref: ncithesaurus:Submandibular_Duct is_a: UBERON:0001837 ! duct of salivary gland relationship: part_of UBERON:0001736 ! submandibular gland [Term] id: UBERON:0002335 name: macula densa alt_id: UBERON:FMA_86333-MA_0002603 def: "." [Wikipedia:Macula_densa] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Macula densa" EXACT [] xref: BTO:0003940 xref: FMA:86333 xref: MA:0002603 xref: ncithesaurus:Macula_Densa is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002303 ! juxtaglomerular complex [Term] id: UBERON:0002336 name: corpus callosum alt_id: UBERON:FMA_86464-MA_0000188-MIAA_0000286 def: "The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provides communications between the right and left cerebral hemispheres[GO]." [Wikipedia:Corpus_callosum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Corpus callosum" EXACT [] xref: BTO:0000615 xref: EFO:0001390 xref: FMA:86464 xref: GAID:683 xref: MA:0000188 xref: MAT:0000286 xref: MIAA:0000286 xref: ncithesaurus:Corpus_Callosum xref: NIF_GrossAnatomy:birnlex_1087 xref: NIF_GrossAnatomy:birnlex_1498 xref: OpenCyc:Mx4rvbNzdZwpEbGdrcN5Y29ycA is_a: UBERON:0002473 ! intercerebral commissure [Term] id: UBERON:0002337 name: endometrial stroma alt_id: UBERON:FMA_86487-MA_0002734 comment: This class was created automatically from a combination of ontologies synonym: "Endometrial stroma" EXACT [] synonym: "endometrium stroma" EXACT [] synonym: "Stroma of endometrium" EXACT [] synonym: "stroma of endometrium" EXACT [] xref: FMA:86487 xref: MA:0002734 xref: ncithesaurus:Endometrial_Stroma is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001295 ! endometrium [Term] id: UBERON:0002338 name: lamina propria of bronchus alt_id: UBERON:FMA_86619-MA_0001836 comment: This class was created automatically from a combination of ontologies synonym: "bronchus lamina propria" EXACT [] synonym: "Lamina propria of bronchus" EXACT [] xref: FMA:86619 xref: MA:0001836 xref: ncithesaurus:Bronchus_Lamina_Propria is_a: UBERON:0000030 ! lamina propria is_a: UBERON:0003592 ! implied link automatically realized ! bronchus connective tissue intersection_of: UBERON:0000030 ! lamina propria intersection_of: part_of UBERON:0002185 ! bronchus relationship: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0002339 name: epithelium of lobar bronchus alt_id: UBERON:FMA_86624-MA_0001842 comment: This class was created automatically from a combination of ontologies synonym: "Epithelium of lobar bronchus" EXACT [] synonym: "Lobar bronchial epithelium" EXACT [] synonym: "lobar bronchial epithelium" EXACT [] synonym: "lobar bronchus epithelium" EXACT [] xref: FMA:86624 xref: MA:0001842 is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium is_a: UBERON:0002031 ! epithelium of bronchus intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002183 ! lobar bronchus relationship: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0002340 name: epithelium of main bronchus alt_id: UBERON:0003245 alt_id: UBERON:FMA_86625-MA_0001847 comment: This class was created automatically from a combination of ontologies synonym: "Epithelium of main bronchus" EXACT [] synonym: "Main bronchial epithelium" EXACT [] synonym: "main bronchial epithelium" EXACT [] synonym: "main bronchus epithelium" EXACT [] xref: EHDAA:5003 xref: FMA:86625 xref: HOG:0001034 xref: MA:0001847 is_a: UBERON:0002031 ! epithelium of bronchus intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002182 ! main bronchus relationship: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0002341 name: epithelium of segmental bronchus alt_id: UBERON:FMA_86626-MA_0001850 comment: This class was created automatically from a combination of ontologies synonym: "Epithelium of segmental bronchus" EXACT [] synonym: "Segmental bronchial epithelium" EXACT [] synonym: "segmental bronchial epithelium" EXACT [] synonym: "segmental bronchus epithelium" EXACT [] xref: FMA:86626 xref: MA:0001850 is_a: UBERON:0002031 ! epithelium of bronchus intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002184 ! segmental bronchus relationship: part_of UBERON:0002184 ! segmental bronchus [Term] id: UBERON:0002342 name: neural crest alt_id: UBERON:FMA_86666-MIAA_0000066-XAO_0000048-ZFA_0000045 def: "A group of embryonic cells that loosen and separate from the neural plate and surrounding epidermis during neurulation and migrate to give several different lineages of adult cells. Wikipedia: The neural crest, a transient component of the ectoderm, is located in between the neural tube and the epidermis (or the free margins of the neural folds) of an embryo during neural tube formation. Neural crest cells quickly migrate during or shortly after neurulation, an embryological event marked by neural tube closure." [ISBN:0815318960, OMD:neural+crest, Wikipedia:Neural_crest, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Neural crest" EXACT [] xref: BTO:0001764 xref: EHDAA:1334 xref: EHDAA:1348 xref: EHDAA:1354 xref: EHDAA:1379 xref: EHDAA:1389 xref: EHDAA:1399 xref: EHDAA:1414 xref: EHDAA:1429 xref: EHDAA:1439 xref: EHDAA:1449 xref: EHDAA:1500 xref: EHDAA:1989 xref: EHDAA:2011 xref: EHDAA:2023 xref: EHDAA:2045 xref: EHDAA:2067 xref: EHDAA:2079 xref: EHDAA:2091 xref: EHDAA:2813 xref: EHDAA:2827 xref: EHDAA:2921 xref: EHDAA:308 xref: EHDAA:324 xref: EHDAA:3510 xref: EHDAA:3666 xref: EHDAA:3682 xref: EHDAA:838 xref: EHDAA:862 xref: EHDAA:872 xref: EHDAA:882 xref: EHDAA:892 xref: EHDAA:906 xref: FMA:86666 xref: GAID:1310 xref: HOG:0000057 xref: MAT:0000066 xref: MIAA:0000066 xref: ncithesaurus:Neural_Crest xref: TAO:0000045 xref: XAO:0000048 xref: ZFA:0000045 is_a: UBERON:0002346 ! neural ectoderm [Term] id: UBERON:0002343 name: musculature of abdomen alt_id: UBERON:FMA_86917-ZFA_0001327 comment: TODO - check musculature vs muscle system; part_of vs is_a synonym: "Abdominal musculature" EXACT [] synonym: "abdominal musculature" EXACT [] synonym: "Musculature of abdomen" EXACT [] xref: FMA:86917 xref: TAO:0001327 xref: ZFA:0001327 is_a: UBERON:0001630 ! muscle organ relationship: part_of UBERON:0001015 ! muscle system [Term] id: UBERON:0002345 name: descending thoracic aorta alt_id: UBERON:FMA_87217-MA_0002572 comment: This class was created automatically from a combination of ontologies synonym: "Descending thoracic aorta" EXACT [] xref: EFO:0002527 xref: FMA:87217 xref: MA:0002572 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001514 ! descending aorta relationship: part_of UBERON:0001515 ! thoracic aorta [Term] id: UBERON:0002346 name: neural ectoderm alt_id: UBERON:FMA_87657-MIAA_0000176-XAO_0000042-ZFA_0001120 def: "The first stage of neural differentiation of ectoderm - it gives rise to the neural and neural crest cells, // Embryonic ectoderm that gives rise to nervous tissue." [NLM:neuroectoderm, Wikipedia:Neuroectoderm] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "neuaral ectoderm" RELATED [] synonym: "Neural ectoderm" EXACT [] synonym: "neurectoderm" EXACT [] synonym: "neuroectoderm" EXACT [] synonym: "presumptive central nervous system" RELATED [] xref: BILA:0000039 xref: EHDAA:1498 xref: EHDAA:255 xref: FBbt:00001061 xref: FMA:87657 xref: HOG:0000150 xref: MAT:0000176 xref: MIAA:0000176 xref: ncithesaurus:Neuroectoderm xref: TAO:0001120 xref: XAO:0000042 xref: ZFA:0001120 is_a: UBERON:0000923 ! germ layer relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:0002347 name: thoracic vertebra alt_id: UBERON:FMA_9139-MA_0000314 def: "." [Wikipedia:Thoracic_vertebra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Dorsal vertebra" EXACT [] synonym: "dorsal vertebra" EXACT [] synonym: "Thoracic vertebra" EXACT [] synonym: "Vertebra thoracica" EXACT [] synonym: "vertebra thoracica" EXACT [] xref: FMA:9139 xref: GAID:244 xref: MA:0000314 xref: ncithesaurus:Thoracic_Vertebra xref: OpenCyc:Mx4rvdZIBpwpEbGdrcN5Y29ycA is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003827 ! implied link automatically realized ! thoracic segment bone is_a: UBERON:0003837 ! implied link automatically realized ! thoracic segment connective tissue intersection_of: UBERON:0002412 ! vertebra intersection_of: part_of UBERON:0000915 ! thorax relationship: part_of UBERON:0000915 ! thorax [Term] id: UBERON:0002348 name: epicardium alt_id: UBERON:FMA_9461-XAO_0000316-ZFA_0005057 def: "Region of visceral serous pericardium which has as its part, the mesothelium, subepicardial layer of epicardium and the fibroelastic connective tissue that is attached to the myocardium and is continuous with the parietal serous pericardium. // External layer of the heart." [Wikipedia:Epicardium, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Epicardium" EXACT [] synonym: "heart epicardium" EXACT [] synonym: "Visceral serous pericardium of heart" EXACT [] synonym: "visceral serous pericardium of heart" EXACT [] xref: FMA:9461 xref: galen:Epicardium xref: ncithesaurus:Epicardium xref: TAO:0005057 xref: XAO:0000316 xref: ZFA:0005057 is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0001048 ! primordium relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002349 name: myocardium alt_id: UBERON:FMA_9462-MA_0000164-XAO_0000065-ZFA_0001319 def: "middle muscular layer of the heart wall[M-W]. Muscle layer of organ which has as its parts the myocardium proper and the conducting system of the heart[FMA]." [Wikipedia:Myocardium] comment: TODO - check 'Myocardum proper' in FMA. We superclass the more generic class for now. FMA has is_a muscle layer - should we add this? subset: uberon_slim synonym: "cardiac muscle" EXACT [ZFA:0001319] synonym: "Heart muscle" EXACT [] synonym: "heart muscle" EXACT [] synonym: "heart myocardium" EXACT [] synonym: "Muscle of heart" EXACT [] synonym: "muscle of heart" EXACT [] synonym: "Myocardium" EXACT [] xref: BTO:0000901 xref: EFO:0000819 xref: EHDAA:1275 xref: EHDAA:1283 xref: EHDAA:1926 xref: EHDAA:1934 xref: EHDAA:3383 xref: EHDAA:3395 xref: EHDAA:430 xref: EHDAA:446 xref: EHDAA:454 xref: EHDAA:462 xref: EHDAA:470 xref: EHDAA:478 xref: EHDAA:5347 xref: EHDAA:5356 xref: EHDAA:776 xref: EHDAA:784 xref: EHDAA:792 xref: EHDAA:804 xref: EHDAA:812 xref: FMA:9462 xref: GAID:173 xref: MA:0000164 xref: MAT:0000453 xref: ncithesaurus:Myocardium xref: OpenCyc:Mx4ro36AFrCvEduAAAAOpmP6tw xref: TAO:0001319 xref: XAO:0000065 xref: ZFA:0001319 is_a: UBERON:0001015 ! muscle system relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002350 name: conducting system of heart alt_id: UBERON:FMA_9476-ZFA_0005063 def: "Conducting tissue of heart which consists of specialized cardiac myocyte in the myocardium." [] comment: This class was created automatically from a combination of ontologies synonym: "Cardiac conduction system" EXACT [] synonym: "cardiac conduction system" EXACT [] synonym: "Cardionector" EXACT [] synonym: "cardionector" EXACT [] synonym: "central conduction system" RELATED [] synonym: "Conducting system of heart" EXACT [] xref: FMA:9476 xref: HOG:0001271 xref: TAO:0005063 xref: ZFA:0005063 is_a: UBERON:0001133 ! cardiac muscle tissue [Term] id: UBERON:0002351 name: sinuatrial node alt_id: UBERON:FMA_9477-MA_0000097-ZFA_0005069 def: "part of the cardiac conduction system that controls the timing of heart muscle contraction. It relays electrical signals to the AV node[GO]. Subdivision of conducting system of heart at the junction of the right atrium and the superior vena cava, around the sinoatrial nodal branch of right coronary artery and is continuous with the internodal tract[FMA]." [GO:0003163, Wikipedia:Sinoatrial_node] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Koch's node" EXACT [] synonym: "koch's node" EXACT [] synonym: "Node of Keith-Flack" EXACT [] synonym: "node of keith-flack" EXACT [] synonym: "SA nodal muscle tissue" EXACT [] synonym: "sa nodal muscle tissue" EXACT [] synonym: "SA node" EXACT [] synonym: "sa node" EXACT [] synonym: "Sinoatrial node" EXACT [] synonym: "sinoatrial node" EXACT [] synonym: "Sinu-atrial node" EXACT [] synonym: "sinu-atrial node" EXACT [] synonym: "Sinuatrial nodal muscle tissue" EXACT [] synonym: "sinuatrial nodal muscle tissue" EXACT [] synonym: "Sinuatrial node" EXACT [] synonym: "Sinus node" EXACT [] synonym: "sinus node" EXACT [] synonym: "Sinus node of Keith and Flack" EXACT [] synonym: "sinus node of keith and flack" EXACT [] xref: FMA:9477 xref: GAID:561 xref: MA:0000097 xref: ncithesaurus:Sinoatrial_Node xref: OpenCyc:Mx4rOhejDGMcEd2AAABQjYGu0g xref: TAO:0005069 xref: ZFA:0005069 is_a: UBERON:0001133 ! cardiac muscle tissue relationship: part_of UBERON:0002350 ! conducting system of heart [Term] id: UBERON:0002352 name: atrioventricular node alt_id: UBERON:FMA_9478-MA_0000095-ZFA_0005070 def: "Subdivision of conducting system of heart which is located in the muscular part of the interatrial septum that is continuous with the atrioventricular bundle." [Wikipedia:Atrioventricular_node] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Aschoff-Tawara node" EXACT [] synonym: "aschoff-tawara node" EXACT [] synonym: "Atrioventricular nodal muscle tissue" EXACT [] synonym: "atrioventricular nodal muscle tissue" EXACT [] synonym: "Atrioventricular node" EXACT [] synonym: "AV nodal muscle tissue" EXACT [] synonym: "av nodal muscle tissue" EXACT [] synonym: "AV node" EXACT [] synonym: "av node" EXACT [] synonym: "Node of Tawara" EXACT [] synonym: "node of tawara" EXACT [] xref: EFO:0000276 xref: FMA:9478 xref: GAID:558 xref: HOG:0001474 xref: MA:0000095 xref: MAT:0000498 xref: ncithesaurus:Atrioventricular_Node xref: OpenCyc:Mx4rMfD91mMcEd2AAABQjYGu0g xref: TAO:0005070 xref: ZFA:0005070 is_a: UBERON:0001133 ! cardiac muscle tissue relationship: part_of UBERON:0002081 ! cardiac atrium relationship: part_of UBERON:0002082 ! cardiac ventricle relationship: part_of UBERON:0002350 ! conducting system of heart [Term] id: UBERON:0002353 name: atrioventricular bundle alt_id: UBERON:FMA_9484-MA_0002576 def: "Subdivision of conducting system of heart which consists of the atrial part and the ventricular part of the atrioventricular bundle and is the direct continuation of the atrioventricular node." [Wikipedia:Bundle_of_His] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Atrioventricular bundle" EXACT [] synonym: "Atrioventricular bundle muscle tissue" EXACT [] synonym: "atrioventricular bundle muscle tissue" EXACT [] synonym: "Atrioventricular fasciculus" EXACT [] synonym: "atrioventricular fasciculus" EXACT [] synonym: "Bundle of His" EXACT [] synonym: "bundle of his" RELATED [] synonym: "His bundle" RELATED [] xref: FMA:9484 xref: GAID:559 xref: galen:BundleOfHis xref: MA:0002576 xref: ncithesaurus:Atrioventricular_Bundle xref: OpenCyc:Mx4rUv1WcGPJEd2AAABQjYGu0g is_a: UBERON:0001133 ! cardiac muscle tissue relationship: part_of UBERON:0002350 ! conducting system of heart [Term] id: UBERON:0002354 name: purkinje fiber alt_id: UBERON:FMA_9492-MA_0000096 def: "Conducting tissue of heart which consists of Purkinje myocytes." [Wikipedia:Purkinje_fiber] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Myofibra conducens cardiacus" EXACT [] synonym: "myofibra conducens cardiacus" EXACT [] synonym: "Purkinje fiber" EXACT [] xref: FMA:9492 xref: GAID:560 xref: MA:0000096 xref: ncithesaurus:Purkinje_Fiber is_a: UBERON:0001133 ! cardiac muscle tissue relationship: part_of UBERON:0002350 ! conducting system of heart [Term] id: UBERON:0002355 name: pelvis alt_id: UBERON:FMA_9578-MA_0000030 def: "Subdivision of trunk, which is demarcated from the abdomen by the plane of the superior pelvic aperture, and from the perineum by the inferior surface of the pelvic diaphragm; together with the thorax, abdomen, and perineum, it constitutes the trunk. Examples: There is only one pelvis." [Wikipedia:Pelvis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pelvis" EXACT [] xref: BTO:0001006 xref: FMA:9578 xref: GAID:87 xref: MA:0000030 xref: ncithesaurus:Pelvis xref: OpenCyc:Mx4rvVjiTJwpEbGdrcN5Y29ycA is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0002356 name: perineum alt_id: UBERON:FMA_9579-MA_0002466 def: "Subdivision of trunk, which is demarcated from the pelvis by the inferior surface of the pelvic diaphragm and from the lower limbs by the perineofemoral lines; together with the thorax, abdomen, and pelvis, it constitutes the trunk. Examples: There is only one perineum." [Wikipedia:Perineum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Perineal region" EXACT [] synonym: "perineal region" EXACT [] synonym: "Perineum" EXACT [] xref: FMA:9579 xref: GAID:90 xref: MA:0002466 xref: ncithesaurus:Perineum xref: OpenCyc:Mx4rvcHSh5wpEbGdrcN5Y29ycA is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0002357 name: serous pericardium alt_id: UBERON:FMA_9582-MA_0002739 def: "Serous membrane which has as its parts the epicardium and parietal serous pericardium that surrounds pericardial cavity." [Wikipedia:Serous_pericardium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Serous pericardium" EXACT [] synonym: "Serous portion of pericardium" EXACT [] synonym: "serous portion of pericardium" EXACT [] xref: FMA:9582 xref: MA:0002739 is_a: UBERON:0000042 ! serous membrane relationship: part_of UBERON:0002406 ! pericardial sac [Term] id: UBERON:0002358 name: peritoneum alt_id: UBERON:FMA_9584-XAO_0000139-ZFA_0005120 def: "A serous membrane that forms the lining of the abdominal cavity or the coelom — it covers most of the intra-abdominal (or coelomic) organs — in higher vertebrates and some invertebrates (annelids, for instance). It is composed of a layer of mesothelium supported by a thin layer of connective tissue. The peritoneum both supports the abdominal organs and serves as a conduit for their blood and lymph vessels and nerves[WP]." [Wikipedia:Peritoneum, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Peritoneum" EXACT [] xref: BTO:0001472 xref: FMA:9584 xref: GAID:18 xref: HOG:0001257 xref: ncithesaurus:Peritoneum xref: TAO:0005120 xref: XAO:0000139 xref: ZFA:0005120 is_a: UBERON:0000042 ! serous membrane is_a: UBERON:0000483 ! epithelium relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0003684 ! abdominal cavity [Term] id: UBERON:0002359 name: fibrous pericardium alt_id: UBERON:FMA_9586-MA_0002738 def: "Membrane organ which is attached to the pericardial sac proper and the central tendon of diaphragm and is continuous with the pretracheal fascia." [Wikipedia:Fibrous_pericardium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Fibrous pericardium" EXACT [] synonym: "Fibrous portion of pericardium" EXACT [] synonym: "fibrous portion of pericardium" EXACT [] xref: FMA:9586 xref: MA:0002738 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0002407 ! pericardium [Term] id: UBERON:0002360 name: meninx alt_id: UBERON:FMA_9589-MA_0001113 def: "Membrane organ that surrounds the brain and the spinal cord // Wikipedia: system of membranes which envelops the central nervous system. Whereas cyclostomes and fishes only have a single envelope called the primitive meninx, amphibians have two layers, consisting of an outer dura mater which is extremely dense and protective, and a pia-arachnoid or secondary meninx which is more delicate and vascular. Mammals have three meninges: pia mater (which follows all the convolutions of the brain and is the most interior), the arachnoid layer (which is delicate and sends strands to the pia mater), and the dura mater (the outer, more protective meninx). The area between the dura mater and the arachnoid layer is called the subdural space; the area between the arachnoid layer is called the subarachnoid space. An additional layer of tissue lies between the two hemispheres of the cerebrum and is called the falx cerebri. " [http://www.shsu.edu/~bio_mlt/Chap15.html, Wikipedia:Meninx] comment: TODO: check singular/plural subset: uberon_slim synonym: "meninges" EXACT [] synonym: "Meninx" EXACT [] xref: BTO:0000144 xref: EFO:0000584 xref: EFO:0000867 xref: EHDAA:1365 xref: EHDAA:1959 xref: EHDAA:1999 xref: EHDAA:2097 xref: EHDAA:2683 xref: EHDAA:2831 xref: EHDAA:2865 xref: EHDAA:3688 xref: EHDAA:3708 xref: EHDAA:5458 xref: EHDAA:5476 xref: FMA:9589 xref: GAID:687 xref: HOG:0001295 xref: MA:0001113 xref: MAT:0000113 xref: ncithesaurus:Meninges xref: ZFA:0001355 is_a: UBERON:0000062 ! organ relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0002361 name: pia mater alt_id: UBERON:FMA_9590-MA_0001116 def: "delicate innermost layer of the meninges—the membranes surrounding the brain and spinal cord. The thin, mesh-like pia mater closely envelops the entire surface of the brain, running down into the fissures of the cortex. It joins with the ependyma which lines the ventricles to form choroid plexuses that produce cerebrospinal fluid. In the spinal cord, the pia mater attaches to the dura mater by the denticular ligaments through the arachnoid membrane. The pia mater is a neural crest derivative." [Wikipedia:Pia_mater] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pia mater" EXACT [] synonym: "Pia mater of neuraxis" EXACT [] synonym: "pia mater of neuraxis" EXACT [] xref: BTO:0001635 xref: EHDAA:1367 xref: EHDAA:1961 xref: EHDAA:2001 xref: EHDAA:2099 xref: EHDAA:2685 xref: EHDAA:2833 xref: EHDAA:2867 xref: EHDAA:3692 xref: EHDAA:3710 xref: EHDAA:6566 xref: EHDAA:6583 xref: FMA:9590 xref: GAID:693 xref: MA:0001116 xref: ncithesaurus:Pia_Mater is_a: UBERON:0002360 ! meninx relationship: part_of UBERON:0002360 ! meninx [Term] id: UBERON:0002362 name: arachnoid mater alt_id: UBERON:FMA_9591-MA_0001114 def: "One of the three meninges, the membranes that cover the brain and spinal cord. It is interposed between the two other meninges, the more superficial dura mater and the deeper pia mater, and is separated from the pia mater by the subarachnoid space." [Wikipedia:Arachnoid_mater] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Arachnoid" EXACT [] synonym: "arachnoid" EXACT [] synonym: "Arachnoid mater" EXACT [] synonym: "Arachnoid mater of neuraxis" EXACT [] synonym: "arachnoid mater of neuraxis" EXACT [] xref: BTO:0001636 xref: FMA:9591 xref: GAID:688 xref: MA:0001114 xref: ncithesaurus:Arachnoiditis xref: OpenCyc:Mx4rve5HlJwpEbGdrcN5Y29ycA is_a: UBERON:0002360 ! meninx [Term] id: UBERON:0002363 name: dura mater alt_id: UBERON:FMA_9592-MA_0001115 def: "the outermost of the three layers of the meninges surrounding the brain and spinal cord. The other two meningeal layers are the pia mater and the arachnoid mater. The dura surrounds the brain and the spinal cord and is responsible for keeping in the cerebrospinal fluid." [Wikipedia:Dura_mater] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Dura mater" EXACT [] synonym: "Dura mater of neuraxis" EXACT [] synonym: "dura mater of neuraxis" EXACT [] xref: BTO:0001637 xref: FMA:9592 xref: GAID:691 xref: MA:0001115 xref: ncithesaurus:Dura_Mater is_a: UBERON:0002360 ! meninx relationship: part_of UBERON:0002360 ! meninx [Term] id: UBERON:0002364 name: tympanic membrane alt_id: UBERON:FMA_9595-MA_0000257 def: "." [Wikipedia:Tympanic_membrane] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ear drum" EXACT [] synonym: "ear drum" EXACT [] synonym: "Lateral wall of tympanic cavity" EXACT [] synonym: "lateral wall of tympanic cavity" EXACT [] synonym: "Membranous wall of tympanic cavity" EXACT [] synonym: "membranous wall of tympanic cavity" EXACT [] synonym: "Rivinus' membrane" EXACT [] synonym: "rivinus' membrane" EXACT [] synonym: "Tympanic membrane" EXACT [] xref: FMA:9595 xref: GAID:870 xref: HOG:0001146 xref: MA:0000257 xref: ncithesaurus:Tympanic_Membrane is_a: UBERON:0000020 ! implied link automatically realized ! sense organ is_a: UBERON:0000094 ! membrane organ relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0002365 name: exocrine gland alt_id: UBERON:FMA_9596-MA_0002564 def: "." [Wikipedia:Exocrine_gland] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ducted gland" EXACT [] synonym: "ducted gland" EXACT [] synonym: "Exocrine gland" EXACT [] synonym: "exocrine gland" EXACT [] synonym: "Glandula exocrina" EXACT [] synonym: "glandula exocrina" EXACT [] xref: BTO:0000765 xref: FMA:9596 xref: GAID:34 xref: MA:0002564 xref: ncithesaurus:Exocrine_Gland is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0002366 name: bulbo-urethral gland alt_id: UBERON:FMA_9599-MA_0000401 def: "Lobular organ the parenchyma of which consists of glandular acini which communicate the bulbar part of the urethra. Examples: There only two instances, right and left bulbo-urethral glands." [Wikipedia:Bulbo-urethral_gland] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bulbo-urethral gland" EXACT [] synonym: "Bulbourethral gland" EXACT [] synonym: "bulbourethral gland" EXACT [] synonym: "Cowper's gland" EXACT [] synonym: "cowper's gland" EXACT [] synonym: "Cowper's glands" EXACT [] synonym: "cowper's glands" EXACT [] xref: BTO:0001698 xref: FMA:9599 xref: GAID:387 xref: MA:0000401 is_a: UBERON:0001338 ! implied link automatically realized ! urethral gland is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0000990 ! reproductive system relationship: part_of UBERON:0001333 ! male urethra relationship: part_of UBERON:0002330 ! exocrine system [Term] id: UBERON:0002367 name: prostate alt_id: UBERON:FMA_9600-MA_0000404-MIAA_0000078 def: "Lobular organ the parenchyma of which has as its parts glandular acini which are continuous with the prostatic part of the urethra. Examples: There is only one prostate." [Wikipedia:Prostate] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Prostate" EXACT [] synonym: "prostate gland" EXACT [] xref: BTO:0001129 xref: EFO:0000858 xref: FMA:9600 xref: GAID:392 xref: HOG:0001261 xref: MA:0000404 xref: MAT:0000078 xref: MIAA:0000078 xref: ncithesaurus:Prostate_Gland xref: OpenCyc:Mx4rv6trqZwpEbGdrcN5Y29ycA is_a: UBERON:0002530 ! gland relationship: develops_from UBERON:0003280 ! endothelium of main bronchus [Term] id: UBERON:0002368 name: endocrine gland alt_id: UBERON:FMA_9602-MA_0002563 def: "." [Wikipedia:Endocrine_gland] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ductless gland" EXACT [] synonym: "ductless gland" EXACT [] synonym: "Endocrine gland" EXACT [] synonym: "Glandula endocrina" EXACT [] synonym: "glandula endocrina" EXACT [] xref: BTO:0001488 xref: FMA:9602 xref: GAID:335 xref: MA:0002563 xref: ncithesaurus:Endocrine_Gland xref: OpenCyc:Mx4rvbkiRZwpEbGdrcN5Y29ycA is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0002369 name: adrenal gland alt_id: UBERON:FMA_9604-MA_0000116-MIAA_0000071-XAO_0000164 def: "This gland can either be a discrete structure located bilaterally above each kidney, or a cluster of cells in the head kidney that perform the functions of the adrenal gland. In either case, this organ consists of two cells types, aminergic chromaffin cells and steroidogenic cortical cells[GO]." [Wikipedia:Adrenal_gland] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Adrenal gland" EXACT [] synonym: "adrenal medulla cell" RELATED [] synonym: "Suprarenal gland" EXACT [] synonym: "suprarenal gland" RELATED [] xref: BTO:0000047 xref: EFO:0000238 xref: FMA:9604 xref: GAID:446 xref: galen:AdrenalGland xref: MA:0000116 xref: MAT:0000071 xref: MIAA:0000071 xref: ncithesaurus:Adrenal_Gland xref: OpenCyc:Mx4rvXYiz5wpEbGdrcN5Y29ycA xref: XAO:0000164 is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0002370 name: thymus alt_id: UBERON:FMA_9607-MA_0000142-MIAA_0000080-XAO_0000163-ZFA_0001078 def: "Anatomical structure of largely lymphoid tissue that functions in cell-mediated immunity by being the site where T cells develop." [NLM:thymus, Wikipedia:Thymus] comment: check - a subtype of gland? not in GO. NCIT has thymus and thymus gland subset: uberon_slim synonym: "Thymus" EXACT [] synonym: "Thymus gland" EXACT [] synonym: "thymus gland" EXACT [] xref: BTO:0001374 xref: EFO:0000860 xref: EHDAA:9119 xref: FMA:9607 xref: GAID:464 xref: HOG:0000253 xref: MA:0000142 xref: MAT:0000080 xref: MIAA:0000080 xref: ncithesaurus:Thymus_Gland xref: TAO:0001078 xref: XAO:0000163 xref: ZFA:0001078 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0002224 ! thoracic cavity relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0002405 ! immune system [Term] id: UBERON:0002371 name: bone marrow alt_id: UBERON:FMA_9608-MA_0000134-MIAA_0000084-XAO_0000123-ZFA_0000669 def: "flexible tissue found in the hollow interior of bones. In adults, marrow in large bones produces new blood cells[WP]. The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis. Davidson and Zon 2004." [Wikipedia:Bone_marrow, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "anterior kidney" RELATED [] synonym: "Bone marrow" EXACT [] synonym: "head kidney" BROAD [] synonym: "kidney marrow" RELATED [] synonym: "Medulla ossea" EXACT [] synonym: "medulla ossea" EXACT [] xref: BTO:0000141 xref: EFO:0000868 xref: FMA:9608 xref: GAID:1287 xref: galen:BoneMarrow xref: HOG:0001218 xref: MA:0000134 xref: MAT:0000084 xref: MIAA:0000084 xref: ncithesaurus:Bone_Marrow xref: OpenCyc:Mx4rvVm-FpwpEbGdrcN5Y29ycA xref: TAO:0000669 xref: XAO:0000123 xref: ZFA:0000669 is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0001474 ! bone relationship: part_of UBERON:0002390 ! hematopoietic system [Term] id: UBERON:0002372 name: tonsil alt_id: UBERON:FMA_9609-MA_0000143 def: "Portion of lymphoid tissue on either side of the throat." [Wikipedia:Tonsil] comment: Most commonly, the term "tonsils" refers to the palatine tonsils that can be seen in the back of the throat. subset: uberon_slim synonym: "Tonsil" EXACT [] xref: BTO:0001387 xref: EFO:0001401 xref: FMA:9609 xref: GAID:341 xref: HOG:0001139 xref: MA:0000143 xref: ncithesaurus:Tonsil xref: OpenCyc:Mx4rvVivrZwpEbGdrcN5Y29ycA is_a: UBERON:0001744 ! lymphoid tissue relationship: part_of UBERON:0001735 ! tonsillar ring [Term] id: UBERON:0002373 name: palatine tonsil alt_id: UBERON:FMA_9610-MA_0000775-MIAA_0000291 def: "tonsils on the left and right sides at the back of the throat. one of the mucosa-associated lymphoid tissues (MALT), located at the entrance to the upper respiratory and gastrointestinal tracts to protect the body from the entry of exogenous material through mucosal sites[WP]." [Wikipedia:Palatine_tonsil] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Faucial tonsil" EXACT [] synonym: "faucial tonsil" EXACT [] synonym: "Palatine tonsil" EXACT [] xref: EFO:0001977 xref: FMA:9610 xref: HOG:0001140 xref: MA:0000775 xref: MAT:0000291 xref: MIAA:0000291 xref: ncithesaurus:Palatine_Tonsil is_a: UBERON:0001732 ! implied link automatically realized ! pharyngeal tonsil is_a: UBERON:0002372 ! tonsil [Term] id: UBERON:0002374 name: metacarpal bone alt_id: UBERON:FMA_9612-MA_0000302 def: "." [Wikipedia:Metacarpal_bone] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Metacarpal" EXACT [] synonym: "metacarpal" EXACT [] synonym: "Metacarpal bone" EXACT [] xref: FMA:9612 xref: MA:0000302 xref: ncithesaurus:Metacarpal_Bone xref: OpenCyc:Mx4rv1Bk45wpEbGdrcN5Y29ycA is_a: UBERON:0001442 ! skeleton of hand is_a: UBERON:0003821 ! metacarpal/metatarsal bone [Term] id: UBERON:0002375 name: cricoid cartilage alt_id: UBERON:FMA_9615-MA_0001762 def: "." [Wikipedia:Cricoid_cartilage] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cricoid cartilage" EXACT [] xref: AAO:0000675 xref: FMA:9615 xref: GAID:110 xref: HOG:0001308 xref: MA:0001762 xref: ncithesaurus:Cricoid_Cartilage is_a: UBERON:0001739 ! laryngeal cartilage [Term] id: UBERON:0002376 name: muscle of head alt_id: UBERON:FMA_9616-MA_0000578-ZFA_0000328 def: "Muscle organ which is a part of the head. Examples: masseter, orbicularis oculi." [] comment: TODO - check ZFA subset: uberon_slim synonym: "cephalic musculature" EXACT [] synonym: "Head muscle" EXACT [] synonym: "head muscle" EXACT [] synonym: "head muscles" RELATED [] synonym: "Muscle of head" EXACT [] synonym: "Musculus caput" EXACT [] synonym: "musculus caput" EXACT [] xref: BTO:0000021 xref: FMA:9616 xref: MA:0000578 xref: TAO:0000328 xref: WBbt:0006761 xref: ZFA:0000328 xref: ZFA:0001652 is_a: UBERON:0001630 ! muscle organ intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000033 ! head [Term] id: UBERON:0002377 name: muscle of neck alt_id: UBERON:FMA_9617-MA_0000587 def: "Muscle organ which is a part of the neck. Examples: platysma, sternocleidomastoid, cricothyroid muscle." [] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Muscle of neck" EXACT [] synonym: "Neck muscle" EXACT [] synonym: "neck muscle" EXACT [] xref: FMA:9617 xref: GAID:149 xref: MA:0000587 xref: ncithesaurus:Neck_Muscle is_a: UBERON:0001630 ! muscle organ intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000974 ! neck relationship: part_of UBERON:0000974 ! neck [Term] id: UBERON:0002378 name: muscle of abdomen alt_id: UBERON:FMA_9620-MA_0000520 def: "Muscle (organ) which is a part of the abdomen. Examples: external oblique, rectus abdominis." [Wikipedia:Abdominal_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "abdomen muscle" EXACT [] synonym: "Abdominal muscle" EXACT [] synonym: "abdominal muscle" EXACT [] synonym: "Abdominal wall muscle" EXACT [] synonym: "abdominal wall muscle" EXACT [] synonym: "Muscle of abdomen" EXACT [] xref: BTO:0001261 xref: FMA:9620 xref: GAID:89 xref: MA:0000520 xref: ncithesaurus:Abdominal_Muscle is_a: UBERON:0001774 ! muscle of trunk intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0002379 name: perineal muscle alt_id: UBERON:FMA_9623-MA_0000538 comment: This class was created automatically from a combination of ontologies synonym: "Muscle of perineum" EXACT [] synonym: "muscle of perineum" EXACT [] synonym: "Perineal muscle" EXACT [] xref: FMA:9623 xref: MA:0000538 xref: ncithesaurus:Perineal_Muscle is_a: UBERON:0001325 ! muscle of pelvis intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002356 ! perineum [Term] id: UBERON:0002380 name: trapezius alt_id: UBERON:FMA_9626-MA_0002398 def: "." [Wikipedia:Trapezius] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Trapezius" EXACT [] xref: FMA:9626 xref: HOG:0000834 xref: MA:0002398 is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0002381 name: pectoralis major alt_id: UBERON:FMA_9627-MA_0002354 def: "." [Wikipedia:Pectoralis_major] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pectoralis major" EXACT [] xref: EHDAA:8311 xref: FMA:9627 xref: HOG:0000895 xref: MA:0002354 xref: ncithesaurus:Pectoralis_Major is_a: UBERON:0001495 ! pectoral muscle [Term] id: UBERON:0002382 name: rectus abdominis alt_id: UBERON:FMA_9628-MA_0002364 def: "." [Wikipedia:Rectus_abdominis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Rectus abdominis" EXACT [] xref: EHDAA:8252 xref: FMA:9628 xref: GAID:142 xref: HOG:0000863 xref: MA:0002364 xref: ncithesaurus:Rectus_Abdominis is_a: UBERON:0002378 ! muscle of abdomen [Term] id: UBERON:0002383 name: supraspinatus alt_id: UBERON:FMA_9629-MA_0002389 def: "." [Wikipedia:Supraspinatus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Supraspinatus" EXACT [] xref: EHDAA:8319 xref: FMA:9629 xref: HOG:0000848 xref: MA:0002389 xref: ncithesaurus:Supraspinatus is_a: UBERON:0001482 ! muscle of shoulder [Term] id: UBERON:0002384 name: connective tissue alt_id: UBERON:FMA_9640-FMA_9721-MA_0000011-MA_0000115-MIAA_0000301-XAO_0000173-XAO_0001017 def: "Tissue which consists of fibroblasts, osteocytes or chondrocytes and intercellular matrix produced by these cells. Examples: bone (tissue), dense regular elastic tissue, areolar tissue, neuroglia, adipose tissue. // Anatomical entity consisting of tissue that is rich in extracellular matrix (collagen, proteoglycan, etc.) and binds together and is the support of the various structures of the body." [BTO:0000421, OMD:connective+tissue, Wikipedia:Connective_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Connective tissue" EXACT [] synonym: "fascia" RELATED [] synonym: "portion of connective tissue" EXACT [] synonym: "Textus connectivus" EXACT [] synonym: "textus connectivus" EXACT [] xref: AAO:0000098 xref: BTO:0000421 xref: EFO:0000952 xref: FMA:9640 xref: GAID:100 xref: galen:ConnectiveTissue xref: MA:0000011 xref: MAT:0000301 xref: MIAA:0000301 xref: ncithesaurus:Connective_Tissue xref: OpenCyc:Mx4rv-aBgZwpEbGdrcN5Y29ycA xref: XAO:0001017 xref: ZFA:0001632 is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0002385 name: muscle tissue alt_id: UBERON:FMA_9641-MA_0002437 def: "Tissue which consists of muscle cells surrounded by a reticulum of collagen fibers or fine connective tissue [endomysium]. Examples: Smooth muscle, Cardiac muscle." [Wikipedia:Muscle_tissue] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Muscle tissue" EXACT [] synonym: "Textus muscularis" EXACT [] synonym: "textus muscularis" EXACT [] xref: AAO:0000306 xref: FMA:9641 xref: MA:0002437 xref: ncithesaurus:Muscle_Tissue is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0001015 ! muscle system [Term] id: UBERON:0002386 name: lower segment of arm alt_id: UBERON:FMA_9663-MA_0000034 def: "." [Wikipedia:Forearm] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Antebrachial region" EXACT [] synonym: "antebrachial region" EXACT [] synonym: "forearm" EXACT [] synonym: "Intermediate segment of free upper limb" EXACT [] synonym: "intermediate segment of free upper limb" EXACT [] synonym: "lower arm" EXACT [] synonym: "zeugopod of arm" EXACT [] xref: BTO:0001447 xref: EHDAA:4172 xref: EHDAA:6218 xref: FMA:9663 xref: GAID:55 xref: galen:Forearm xref: MA:0000034 xref: ncithesaurus:Forearm xref: OpenCyc:Mx4rvVjnmpwpEbGdrcN5Y29ycA is_a: UBERON:0002471 ! zeugopod intersection_of: UBERON:0002471 ! zeugopod intersection_of: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0002387 name: foot alt_id: UBERON:FMA_9664-MA_0000044 def: "." [Wikipedia:Foot] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Foot" EXACT [] synonym: "Terminal segment of free lower limb" EXACT [] synonym: "terminal segment of free lower limb" EXACT [] xref: BTO:0000476 xref: FMA:9664 xref: GAID:40 xref: galen:Foot xref: MA:0000044 xref: ncithesaurus:Foot xref: OpenCyc:Mx4rvVi-k5wpEbGdrcN5Y29ycA is_a: UBERON:0002470 ! autopod intersection_of: UBERON:0002470 ! autopod intersection_of: part_of UBERON:0002103 ! hindlimb relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0002388 name: ankle alt_id: UBERON:FMA_9665-MA_0000043 def: "." [Wikipedia:Ankle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Ankle" EXACT [] xref: EFO:0001409 xref: FMA:9665 xref: GAID:41 xref: galen:Ankle xref: MA:0000043 xref: OpenCyc:Mx4rvVi-R5wpEbGdrcN5Y29ycA is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0002389 name: finger alt_id: UBERON:FMA_9666-MA_0000041 def: "Subdivision of the hand demarcated from the hand proper by the skin crease in line with the distal edge of finger webs. Examples: thumb, right middle finger, left little finger [FMA]. A digit found on the hands of humans and other primates used for manipulation and sensation [Wikipedia]." [Wikipedia:Finger] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Digit of hand" EXACT [] synonym: "digit of hand" EXACT [] synonym: "Digitus manus" EXACT [] synonym: "digitus manus" EXACT [] synonym: "Finger" EXACT [] synonym: "hand digit" EXACT [] xref: FMA:9666 xref: GAID:57 xref: galen:Finger xref: MA:0000041 xref: ncithesaurus:Finger xref: OpenCyc:Mx4rvVi_f5wpEbGdrcN5Y29ycA is_a: UBERON:0000028 ! fore digit intersection_of: UBERON:0002544 ! digit intersection_of: part_of UBERON:0002398 ! hand relationship: part_of UBERON:0002398 ! hand [Term] id: UBERON:0002390 name: hematopoietic system alt_id: UBERON:FMA_9667-MA_0002434-MIAA_0000022-XAO_0000122-ZFA_0005023 def: "Anatomical system that consists of the blood and blood forming tissues." [OMD:haematological, Wikipedia:Hematopoietic_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "haematological system" EXACT [] synonym: "haematopoietic system" RELATED [] synonym: "haemopoietic system" EXACT [] synonym: "hematological system" RELATED [] synonym: "hematolymphoid system" RELATED [] synonym: "Hematopoietic system" EXACT [] synonym: "Hemopoietic system" EXACT [] synonym: "hemopoietic system" RELATED [] synonym: "Organa haemopoietica" EXACT [] synonym: "organa haemopoietica" EXACT [] xref: BTO:0000570 xref: EFO:0000798 xref: FMA:9667 xref: GAID:1008 xref: HOG:0001624 xref: MA:0002434 xref: MAT:0000022 xref: MIAA:0000022 xref: ncithesaurus:Hematopoietic_System xref: TAO:0005023 xref: XAO:0000122 xref: ZFA:0005023 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system relationship: part_of UBERON:0002193 ! hemolymphoid system [Term] id: UBERON:0002391 name: lymph alt_id: UBERON:FMA_9671-MA_0002520-MIAA_0000055 def: "Transudate contained in the lumen of lymphatic vessel (FMA). Lymph is the fluid that is formed when interstitial fluid enters the conduits of the lymphatic system (wikipedia)." [Wikipedia:Lymph] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lymph" EXACT [] xref: BTO:0000855 xref: EFO:0000871 xref: ENVO:02000041 xref: FMA:9671 xref: GAID:1186 xref: MA:0002520 xref: MAT:0000055 xref: MIAA:0000055 xref: ncithesaurus:Lymph is_a: UBERON:0000179 ! haemolymphatic fluid relationship: develops_from UBERON:0000913 ! interstitial fluid [Term] id: UBERON:0002392 name: nasolacrimal duct alt_id: UBERON:FMA_9703-MA_0001299 def: "." [Wikipedia:Nasolacrimal_duct] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Nasolacrimal duct" EXACT [] xref: EHDAA:7849 xref: EHDAA:9094 xref: FMA:9703 xref: GAID:902 xref: MA:0001299 xref: ncithesaurus:Nasolacrimal_Duct xref: OpenCyc:Mx4rv6PJy5wpEbGdrcN5Y29ycA is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0001850 ! lacrimal duct [Term] id: UBERON:0002393 name: pharyngotympanic tube alt_id: UBERON:FMA_9705-MA_0000255-XAO_0000213 def: "Organ with organ cavity which connects the cavity of the middle ear to the cavity of the pharynx. Examples: There are only two pharyngotympanic tubes, the right and the left pharyngotympanic tubes." [Wikipedia:Pharyngotympanic_tube] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Auditory tube" EXACT [] synonym: "auditory tube" EXACT [] synonym: "Eustachian tube" EXACT [] synonym: "eustachian tube" RELATED [] synonym: "Internal auditory tube" EXACT [] synonym: "internal auditory tube" EXACT [] synonym: "Pharyngotympanic tube" EXACT [] xref: FMA:9705 xref: GAID:869 xref: HOG:0001145 xref: MA:0000255 xref: ncithesaurus:Eustachian_Tube xref: XAO:0000213 is_a: UBERON:0000020 ! implied link automatically realized ! sense organ is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001756 ! middle ear [Term] id: UBERON:0002394 name: bile duct alt_id: UBERON:FMA_9706-MA_0000354-XAO_0000134 def: "Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Bile duct" EXACT [] synonym: "Biliary duct" EXACT [] synonym: "biliary duct" EXACT [] synonym: "hepatic duct" RELATED [] xref: BTO:0000122 xref: FMA:9706 xref: GAID:280 xref: HOG:0000212 xref: MA:0000354 xref: ncithesaurus:Bile_Duct xref: OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA xref: XAO:0000134 is_a: UBERON:0000058 ! duct intersection_of: UBERON:0000058 ! duct intersection_of: transports UBERON:0001970 ! bile relationship: part_of UBERON:0000916 ! abdomen relationship: part_of UBERON:0002294 ! biliary system [Term] id: UBERON:0002395 name: talus alt_id: UBERON:FMA_9708-MA_0001351 def: "." [Wikipedia:Talus] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "astragalus" RELATED [] synonym: "Talus" EXACT [] xref: BTO:0002354 xref: FMA:9708 xref: GAID:196 xref: MA:0001351 xref: ncithesaurus:Talus is_a: UBERON:0001447 ! tarsal bone [Term] id: UBERON:0002396 name: vomer alt_id: UBERON:FMA_9710-MA_0001496 def: "." [Wikipedia:Vomer] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Vomer" EXACT [] synonym: "Vomer bone" EXACT [] synonym: "vomer bone" EXACT [] xref: AAO:0000633 xref: FMA:9710 xref: MA:0001496 xref: ncithesaurus:Vomer xref: OpenCyc:Mx4rv6jKWZwpEbGdrcN5Y29ycA xref: ZFA:0000308 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0002397 name: maxilla alt_id: UBERON:FMA_9711-MA_0001491-ZFA_0000270 def: "The dermal maxilla forms part of the upper jaw. It is first visible as a small dorsoventrally oriented rod of bone in the lateral region of the upper jaw. Through anterior ossification it becomes S-shaped, with its anteriormost tip directed medially (4.8 mm NL). The posteroventral end of the maxilla is connected to the dentary by a ligament. Maxillary teeth are absent in cypriniforms, but are present in other ostariophysans. . Two barbels are present on the maxilla. The presence of two pairs of maxillary barbels is considered by Cavender and Coburn (1992) to be the primitive condition for the Cyprinidae." [Wikipedia:Maxilla, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Maxilla" EXACT [] synonym: "maxillae" RELATED [] synonym: "Upper jaw bone" EXACT [] synonym: "upper jaw bone" EXACT [] xref: AAO:0000285 xref: EHDAA:8043 xref: FMA:9711 xref: GAID:220 xref: HAO:0000513 xref: HOG:0001021 xref: MA:0001491 xref: ncithesaurus:Maxilla xref: TAO:0000270 xref: ZFA:0000270 is_a: UBERON:0002514 ! intramembranous bone is_a: UBERON:0003462 ! implied link automatically realized ! viscerocranium bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0001709 ! upper jaw relationship: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0002398 name: hand alt_id: UBERON:FMA_9712-MA_0000037 def: "." [Wikipedia:Hand] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Hand" EXACT [] synonym: "Terminal segment of free upper limb" EXACT [] synonym: "terminal segment of free upper limb" EXACT [] xref: FMA:9712 xref: GAID:56 xref: galen:Hand xref: MA:0000037 xref: ncithesaurus:Hand xref: OpenCyc:Mx4rvViGVZwpEbGdrcN5Y29ycA is_a: UBERON:0002470 ! autopod intersection_of: UBERON:0002470 ! autopod intersection_of: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0002399 name: lesser omentum alt_id: UBERON:FMA_9715-MA_0001623 def: "." [Wikipedia:Lesser_omentum] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lesser omentum" EXACT [] xref: EHDAA:4858 xref: FMA:9715 xref: HOG:0000357 xref: MA:0001623 xref: ncithesaurus:Lesser_Omentum is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001178 ! visceral peritoneum [Term] id: UBERON:0002400 name: parietal pleura alt_id: UBERON:FMA_9733-MA_0002488 def: "Parietal serous membrane which is continuous with the visceral pleura and is attached to the dome of the diaphragm." [Wikipedia:Parietal_pleura] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Parietal pleura" EXACT [] xref: FMA:9733 xref: HOG:0001495 xref: MA:0002488 xref: ncithesaurus:Parietal_Pleura is_a: UBERON:0000042 ! serous membrane relationship: part_of UBERON:0000977 ! mesothoracic pleurum [Term] id: UBERON:0002401 name: visceral pleura alt_id: UBERON:FMA_9734-MA_0002489 def: "Visceral serous membrane which is continuous with the parietal pleura and is attached to the parenchyma of lobe of lung." [Wikipedia:Visceral_pleura] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pleura visceralis (pulmonalis)" EXACT [] synonym: "pleura visceralis (pulmonalis)" EXACT [] synonym: "Pulmonary pleura" EXACT [] synonym: "pulmonary pleura" EXACT [] synonym: "Visceral pleura" EXACT [] xref: FMA:9734 xref: MA:0002489 xref: ncithesaurus:Visceral_Pleura is_a: UBERON:0000042 ! serous membrane relationship: part_of UBERON:0000977 ! mesothoracic pleurum [Term] id: UBERON:0002402 name: pleural cavity alt_id: UBERON:FMA_9740-MA_0000055 def: "Cavity of serous sac surropunded by the pleura." [Wikipedia:Pleural_cavity] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pleural cavity" EXACT [] xref: FMA:9740 xref: GAID:95 xref: HOG:0000581 xref: MA:0000055 xref: ncithesaurus:Pleural_Cavity is_a: UBERON:0002323 ! body cavity [Term] id: UBERON:0002403 name: internal intercostal muscle alt_id: UBERON:FMA_9757-MA_0002326 def: "." [Wikipedia:Internal_intercostal_muscle] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "intercostal muscle internal layer" RELATED [] synonym: "intercostales internus" EXACT [] synonym: "Internal intercostal muscle" EXACT [] xref: FMA:9757 xref: HOG:0000905 xref: MA:0002326 xref: ncithesaurus:Internal_Intercostal_Muscle is_a: UBERON:0001111 ! intercostal muscle [Term] id: UBERON:0002404 name: transversus thoracis alt_id: UBERON:FMA_9760-MA_0002397 def: "." [Wikipedia:Transversus_thoracis] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Transversus thoracis" EXACT [] xref: FMA:9760 xref: MA:0002397 xref: ncithesaurus:Transversus_Thoracis is_a: UBERON:0002426 ! chest muscle [Term] id: UBERON:0002405 name: immune system alt_id: UBERON:FMA_9825-MA_0002711-XAO_0003152-ZFA_0001159 def: "Anatomical system that protects the body from foreign substances, cells, and tissues by producing the immune response and that includes especially the thymus, spleen, lymphoid tissue, lymphocytes including the B cells and T cells, and antibodies." [NLM:immune+system, Wikipedia:Immune_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Immune system" EXACT [] xref: BILA:0000104 xref: FMA:9825 xref: GAID:328 xref: HOG:0001247 xref: MA:0002711 xref: ncithesaurus:Immune_System xref: OpenCyc:Mx4rvWNkm5wpEbGdrcN5Y29ycA xref: TAO:0001159 xref: XAO:0003152 xref: ZFA:0001159 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002416 ! integumental system disjoint_from: UBERON:0002423 ! hepatobiliary system [Term] id: UBERON:0002406 name: pericardial sac alt_id: UBERON:FMA_9868-ZFA_0000054 def: "Serous sac, which has as parts the serous pericardium and the pericardial cavity . Examples: There is only one pericardial sac." [Wikipedia:Pericardial_sac] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pericardial sac" EXACT [] synonym: "pericardium" RELATED [] xref: FMA:9868 xref: TAO:0000054 xref: ZFA:0000054 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001009 ! circulatory system relationship: part_of UBERON:0002407 ! pericardium [Term] id: UBERON:0002407 name: pericardium alt_id: UBERON:FMA_9869-MA_0000099 def: "Organ cluster which has as its parts the fibrous pericardium and the pericardial sac." [Wikipedia:Pericardium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pericardium" EXACT [] xref: BTO:0000717 xref: EFO:0000820 xref: EHDAA:5376 xref: FMA:9869 xref: GAID:569 xref: HOG:0001280 xref: MA:0000099 xref: MAT:0000454 xref: ncithesaurus:Pericardium is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002408 name: parietal serous pericardium alt_id: UBERON:FMA_9870-MA_0000483 def: "Parietal serous membrane which is continuous with the visceral serous pericardium and is attached to the central tendon of diaphragm." [Wikipedia:Parietal_pericardium] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lamina parietalis (pericardii serosum)" EXACT [] synonym: "lamina parietalis (pericardii serosum)" EXACT [] synonym: "Parietal layer of serous pericardium" EXACT [] synonym: "parietal layer of serous pericardium" EXACT [] synonym: "Parietal pericardium" EXACT [] synonym: "parietal pericardium" EXACT [] synonym: "Parietal serous pericardium" EXACT [] xref: EHDAA:3422 xref: EHDAA:5378 xref: FMA:9870 xref: HOG:0000537 xref: MA:0000483 is_a: UBERON:0000042 ! serous membrane relationship: part_of UBERON:0002357 ! serous pericardium [Term] id: UBERON:0002409 name: pericardial fluid alt_id: UBERON:FMA_9887-MA_0002530 def: "Transudate contained in the pericardial cavity." [Wikipedia:Pericardial_fluid] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Pericardial fluid" EXACT [] xref: BTO:0001016 xref: FMA:9887 xref: MA:0002530 is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0002410 name: autonomic nervous system alt_id: UBERON:FMA_9905-MA_0000219-ZFA_0001574 def: "The autonomic nervous system is composed of neurons that are not under conscious control, and is comprised of two antagonistic components, the sympathetic and parasympathetic nervous systems. The autonomic nervous system regulates key functions including the activity of the cardiac (heart) muscle, smooth muscles (e.g. of the gut), and glands[GO]." [Wikipedia:Autonomic_nervous_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ANS" RELATED [] synonym: "Autonomic nervous system" EXACT [] synonym: "Visceral nervous system" EXACT [] synonym: "visceral nervous system" EXACT [] xref: AAO:0000033 xref: BTO:0002507 xref: EHDA:10095 xref: FMA:9905 xref: GAID:706 xref: HOG:0000396 xref: MA:0000219 xref: ncithesaurus:Autonomic_Nervous_System xref: NIF_GrossAnatomy:birnlex_1123 xref: TAO:0001574 xref: ZFA:0001574 is_a: UBERON:0000073 ! regional part of nervous system relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002411 name: clitoris alt_id: UBERON:FMA_9909-MA_0000382 def: "." [Wikipedia:Clitoris] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Clitoris" EXACT [] xref: BTO:0002020 xref: FMA:9909 xref: GAID:385 xref: galen:Clitoris xref: HOG:0000700 xref: MA:0000382 xref: ncithesaurus:Clitoris xref: OpenCyc:Mx4rvVjr6ZwpEbGdrcN5Y29ycA is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000997 ! vulva [Term] id: UBERON:0002412 name: vertebra alt_id: UBERON:FMA_9914-MA_0000309-ZFA_0001189 def: "Irregular bone that articulates with other vertebrae, or with one other vertebra and the skull or the sacrum // All serially repeated ossified, cartilaginous, and ligamentous elements around the notochord (Schultze and Arratia, 1988)." [Wikipedia:Vertebra, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Vertebra" EXACT [] xref: AAO:0000691 xref: EFO:0001371 xref: FMA:9914 xref: HOG:0001143 xref: MA:0000309 xref: ncithesaurus:Vertebra xref: TAO:0001189 xref: ZFA:0001189 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003463 ! implied link automatically realized ! trunk bone is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0002413 name: cervical vertebra alt_id: UBERON:FMA_9915-MA_0000311-XAO_0003076 def: "." [Wikipedia:Cervical_vertebra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Cervical vertebra" EXACT [] xref: FMA:9915 xref: GAID:235 xref: galen:CervicalVertebra xref: MA:0000311 xref: ncithesaurus:Cervical_Vertebra xref: XAO:0003076 is_a: UBERON:0002412 ! vertebra is_a: UBERON:0003458 ! implied link automatically realized ! neck bone is_a: UBERON:0003568 ! implied link automatically realized ! neck connective tissue relationship: part_of UBERON:0000974 ! neck [Term] id: UBERON:0002414 name: lumbar vertebra alt_id: UBERON:FMA_9921-MA_0000312 def: "Large vertebra of the movable part of the vertebral column, characterized by the absence of the foramen transversarium within the transverse process, and by the absence of facets on the sides of the body." [Wikipedia:Lumbar_vertebra] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Lumbar vertebra" EXACT [] xref: FMA:9921 xref: GAID:240 xref: MA:0000312 xref: ncithesaurus:Lumbar_Vertebra xref: OpenCyc:Mx4rvaOek5wpEbGdrcN5Y29ycA is_a: UBERON:0002412 ! vertebra [Term] id: UBERON:0002415 name: tail alt_id: UBERON:MA_0000008-MIAA_0000094-WBbt_0005741-XAO_0003026-ZFA_0001117 def: "posterior region, from rectum to the end // Organism subdivision that is the terminal, flexible posterior appendage of the larva. It is resorbed during metamorphosis beginning with degeneration of the notochord's distal tip at NF stage 61, followed by degeneration gradually extending to its more proximal regions and reaching its proximal end by NF stage 62. By NF stage 66 it exists only as a small dorsal swelling. // Organism subdivision which is the part of the body posterior to the vent which includes the anal and caudal fins." [ISBN:0471209627, OMD:tail, WB:rynl, Wikipedia:Tail, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "post-vent region" EXACT [] xref: BILA:0000117 xref: BTO:0001348 xref: EFO:0000963 xref: EHDAA:9198 xref: GAID:1245 xref: MA:0000008 xref: MAT:0000094 xref: MIAA:0000094 xref: OpenCyc:Mx4rvVjiC5wpEbGdrcN5Y29ycA xref: TAO:0001117 xref: WBbt:0005741 xref: XAO:0003026 xref: ZFA:0001117 is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0002416 name: integumental system alt_id: UBERON:MA_0000014-FMA_72979 def: "organ system that protects the body from damage, comprising the skin and its appendages (including hair, scales, and nails). The integumentary system has a variety of functions; it may serve to waterproof, cushion and protect the deeper tissues, excrete wastes, regulate temperature and is the location of receptors for pain, sensation, pressure and temperature. In humans the integumentary system additionally provides vitamin D synthesis[WP]." [Wikipedia:Integumentary_system] synonym: "Integumental system" EXACT [FMA:72979] xref: EFO:0000807 xref: EHDAA:6520 xref: FMA:72979 xref: HOG:0000403 xref: MA:0000014 xref: MAT:0000033 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002423 ! hepatobiliary system relationship: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0002417 name: abdominal segment of trunk alt_id: UBERON:MA_0000021-FMA_259211 synonym: "abdomen/pelvis/perineum" RELATED [MA:0000021] synonym: "lower body" RELATED [MA:0000021] xref: FMA:259211 xref: MA:0000021 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0002418 name: cartilage alt_id: UBERON:MA_0000104-MIAA_0000189-XAO_0000170 def: "a portion of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate[GO]. Regular connective tissue, which consists of chondrocytes and related cells, the intercellular matrix of which is chondrified. Examples: hyaline cartilage, fibrocartilage, elastic cartilage[FMA]." [FMA:37377, GO:0051216, Wikipedia:Cartilage] comment: see also FMA:71500 Set of cartilages, FMA:55107 Cartilage organ, FMA:12264 Articular cartilage subset: uberon_slim xref: AAO:0000060 xref: BTO:0000206 xref: EFO:0000949 xref: FMA:37377 xref: GAID:99 xref: galen:Cartilage xref: HOG:0001207 xref: MA:0000104 xref: MAT:0000189 xref: MIAA:0000189 xref: ncithesaurus:Cartilage xref: OpenCyc:Mx4rvVjeOZwpEbGdrcN5Y29ycA xref: TAO:0001501 xref: XAO:0000170 xref: ZFA:0001501 is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0002204 ! musculoskeletal system [Term] id: UBERON:0002419 name: skin gland alt_id: UBERON:MA_0000146-FMA_71878 synonym: "Skin glands" EXACT [FMA:71878] synonym: "skin glands" EXACT [] synonym: "Skin glands set" EXACT [FMA:71878] synonym: "skin glands set" EXACT [] xref: FMA:71878 xref: MA:0000146 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0002530 ! gland is_a: UBERON:0003297 ! implied link automatically realized ! gland of integumental system relationship: part_of UBERON:0002097 ! skin [Term] id: UBERON:0002420 name: basal ganglia def: "group of nuclei in the brains of vertebrates, situated at the base of the forebrain and strongly connected with the cerebral cortex, thalamus and other areas.ganglion in the head. The main components of the basal ganglia are the striatum, pallidum, substantia nigra, and subthalamic nucleus[WP]. Subcortical masses of gray matter in the forebrain and midbrain that are richly interconnected and so viewed as a functional system. The nuclei usually included are the caudate nucleus (caudoputamen in rodents), putamen, globus pallidus, substantia nigra (pars compacta and pars reticulata) and the subthalamic nucleus. Some also include the nucleus accumbens and ventral pallidum[NIF]." [Wikipedia:Basal_ganglia] comment: FMA also has singular - FMA:62514 subset: uberon_slim synonym: "basal ganglion" RELATED [] synonym: "basal nucleus" RELATED [] synonym: "basasl nucleus" BROAD [] xref: EFO:0000904 xref: FMA:84013 xref: GAID:617 xref: MA:0000184 xref: ncithesaurus:Basal_Ganglia xref: NIF_GrossAnatomy:birnlex_826 is_a: UBERON:0000045 ! ganglion is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003339 ! implied link automatically realized ! ganglion of central nervous system relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0002421 name: hippocampal formation alt_id: UBERON:MA_0000189-FMA_74038 def: "." [Wikipedia:Hippocampal_formation] subset: uberon_slim synonym: "archipallium" RELATED [MA:0000189] synonym: "Hippocampus (Crosby)" EXACT [FMA:74038] synonym: "hippocampus (crosby)" EXACT [] synonym: "primal cortex" RELATED [MA:0000189] xref: FMA:74038 xref: MA:0000189 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0002422 name: fourth ventricle alt_id: UBERON:MA_0000196-FMA_78469 def: "The fourth ventricle is an irregularly shaped cavity in the rhombencephalon, between the medulla oblongata, the pons, and the isthmus in front, and the cerebellum behind. It is continuous with the central canal of the cord below and with the cerebral aqueduct above, and through its lateral and median apertures it communicates with the subarachnoid space[GO]." [Wikipedia:Fourth_ventricle] subset: uberon_slim synonym: "4th ventricle" RELATED [MA:0000196] xref: BTO:0003426 xref: FMA:78469 xref: HOG:0000006 xref: MA:0000196 xref: ncithesaurus:Fourth_Ventricle_of_the_Brain xref: OpenCyc:Mx4rv-7Q6pwpEbGdrcN5Y29ycA xref: ZFA:0000110 is_a: UBERON:0002300 ! ventricle relationship: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0002423 name: hepatobiliary system alt_id: UBERON:MA_0000324-MIAA_0000024-XAO_0000132-ZFA_0000036 def: "." [Wikipedia:Hepatobiliary_system] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "liver and biliary system" EXACT [] synonym: "liver/biliary system" RELATED [] xref: EFO:0000800 xref: EHDAA:2189 xref: HOG:0000294 xref: MA:0000324 xref: MAT:0000024 xref: MIAA:0000024 xref: ncithesaurus:Hepatobiliary_System xref: TAO:0000036 xref: XAO:0000132 xref: ZFA:0000036 is_a: UBERON:0000467 ! anatomical system disjoint_from: UBERON:0000075 ! subdivision of skeleton disjoint_from: UBERON:0000949 ! endocrine system disjoint_from: UBERON:0000990 ! reproductive system disjoint_from: UBERON:0001004 ! respiratory system disjoint_from: UBERON:0001007 ! digestive system disjoint_from: UBERON:0001008 ! urinary system disjoint_from: UBERON:0001009 ! circulatory system disjoint_from: UBERON:0001016 ! nervous system disjoint_from: UBERON:0001032 ! sense organ system disjoint_from: UBERON:0001033 ! gustatory system disjoint_from: UBERON:0001434 ! skeleton disjoint_from: UBERON:0002204 ! musculoskeletal system disjoint_from: UBERON:0002294 ! biliary system disjoint_from: UBERON:0002330 ! exocrine system disjoint_from: UBERON:0002390 ! hematopoietic system disjoint_from: UBERON:0002405 ! immune system disjoint_from: UBERON:0002416 ! integumental system relationship: part_of UBERON:0001007 ! digestive system [Term] id: UBERON:0002424 name: oral epithelium alt_id: UBERON:MA_0000344-ZFA_0000816 xref: BTO:0001775 xref: EHDAA:2187 xref: HOG:0000187 xref: MA:0000344 xref: ZFA:0000816 is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0000166 ! oral opening [Term] id: UBERON:0002425 name: visceral serous pericardium alt_id: UBERON:MA_0000484-FMA_84882 def: "." [Wikipedia:Visceral_pericardium] subset: uberon_slim synonym: "epicardium" RELATED [MA:0000484] synonym: "Visceral lamina of serous pericardium" EXACT [FMA:84882] synonym: "visceral lamina of serous pericardium" EXACT [] synonym: "Visceral layer of serous pericardium" EXACT [FMA:84882] synonym: "visceral layer of serous pericardium" EXACT [] synonym: "Visceral pericardium" EXACT [FMA:84882] synonym: "visceral pericardium" EXACT [] xref: FMA:84882 xref: HOG:0000538 xref: MA:0000484 is_a: UBERON:0002357 ! serous pericardium relationship: attached_to UBERON:0002349 ! myocardium [Term] id: UBERON:0002426 name: chest muscle alt_id: UBERON:MA_0000548-FMA_9619 synonym: "Chest muscle" EXACT [FMA:9619] synonym: "Musculus thoracicus" EXACT [FMA:9619] synonym: "musculus thoracicus" EXACT [] synonym: "Thoracic muscle" EXACT [FMA:9619] synonym: "thoracic muscle" EXACT [] xref: FMA:9619 xref: MA:0000548 is_a: UBERON:0001774 ! muscle of trunk is_a: UBERON:0003830 ! implied link automatically realized ! thoracic segment muscle intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001443 ! chest relationship: part_of UBERON:0001443 ! chest [Term] id: UBERON:0002427 name: arm skin alt_id: UBERON:MA_0000596-FMA_37721 synonym: "Arm skin" EXACT [FMA:37721] xref: FMA:37721 xref: MA:0000596 xref: ncithesaurus:Arm_Skin is_a: UBERON:0001419 ! skin of limb is_a: UBERON:0002097 ! skin is_a: UBERON:0003531 ! implied link automatically realized ! forelimb skin intersection_of: UBERON:0002097 ! skin intersection_of: part_of UBERON:0001460 ! arm relationship: constitutional_part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0002428 name: limb bone alt_id: UBERON:MA_0000688-MIAA_0000151 comment: This class was created automatically from a combination of ontologies synonym: "limb skeleton" RELATED [] xref: EFO:0000880 xref: MA:0000688 xref: MAT:0000151 xref: MIAA:0000151 is_a: UBERON:0001474 ! bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002101 ! limb relationship: part_of UBERON:0002091 ! appendicular skeleton relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0002429 name: cervical lymph node alt_id: UBERON:MA_0000736-FMA_61213 def: "." [Wikipedia:Cervical_lymph_node] subset: uberon_slim synonym: "Cervical lymph node" EXACT [FMA:61213] xref: FMA:61213 xref: MA:0000736 xref: ncithesaurus:Cervical_Lymph_Node is_a: UBERON:0000029 ! lymph node intersection_of: UBERON:0000029 ! lymph node intersection_of: part_of UBERON:0000002 ! cervix [Term] id: UBERON:0002430 name: lateral hypothalamic area alt_id: UBERON:MA_0000834-FMA_62030 def: "." [Wikipedia:Lateral_hypothalamic_area] subset: uberon_slim synonym: "Lateral division of hypothalamus" EXACT [FMA:62030] synonym: "lateral division of hypothalamus" EXACT [] synonym: "Lateral group of hypothalamic nuclei" EXACT [FMA:62030] synonym: "lateral group of hypothalamic nuclei" EXACT [] synonym: "Lateral hypothalamic area" EXACT [FMA:62030] synonym: "Lateral hypothalamic group" EXACT [FMA:62030] synonym: "lateral hypothalamic group" EXACT [] synonym: "lateral hypothalamic nucleus" RELATED [MA:0000834] synonym: "Lateral hypothalamic zone (Crosby)" EXACT [FMA:62030] synonym: "lateral hypothalamic zone (crosby)" EXACT [] xref: FMA:62030 xref: MA:0000834 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus relationship: part_of UBERON:0002273 ! lateral zone of hypothalamus [Term] id: UBERON:0002431 name: pars anterior alt_id: UBERON:MA_0000854-ZFA_0001195 synonym: "anterior lobe" RELATED [MA:0000854] synonym: "pars distalis" RELATED [MA:0000854, ZFA:0001195] synonym: "pars glandularis" RELATED [MA:0000854] xref: EHDAA:7532 xref: HOG:0000244 xref: MA:0000854 xref: ZFA:0001195 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0002196 ! adenohypophysis [Term] id: UBERON:0002432 name: pars intermedia alt_id: UBERON:MA_0000855-ZFA_0001197 def: "boundary between the anterior and posterior lobes of the pituitary. It contains three types of cells: basophils, chromophobes, and colloid-filled cysts. The cysts are the remainder of Rathke's pouch. In human fetal life, this area produces melanocyte stimulating hormone or MSH which causes the release of melanin pigment in skin melanocytes (pigment cells). However, the pars intermedia is normally either very small or entirely absent in adulthood. In lower vertebrates (fish, amphibians) MSH from the pars intermedia is responsible for darkening of the skin, often in response to changes in background color. This color change is due to MSH stimulating the dispersion of melanin pigment in dermal (skin) melanophore cells." [Wikipedia:Pars_intermedia] subset: uberon_slim xref: BTO:0001788 xref: EHDAA:8765 xref: HOG:0001178 xref: MA:0000855 xref: ZFA:0001197 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0002196 ! adenohypophysis [Term] id: UBERON:0002433 name: pars tuberalis alt_id: UBERON:MA_0000856-ZFA_0001196 def: "." [Wikipedia:Pars_tuberalis] subset: uberon_slim xref: BTO:0001739 xref: EHDAA:8767 xref: HOG:0001114 xref: MA:0000856 xref: ZFA:0001196 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0002196 ! adenohypophysis [Term] id: UBERON:0002434 name: pituitary stalk alt_id: UBERON:MA_0000858-ZFA_0001199 def: "a funnel-shape cavity or organ." [Wikipedia:Infundibulum] subset: uberon_slim synonym: "hypophysial stalk" RELATED [ZFA:0001199] synonym: "infundibulum" RELATED [ZFA:0001199] synonym: "infundibulum of hypothalamus" RELATED [ZFA:0001199] xref: BTO:0000768 xref: EHDAA:7538 xref: HOG:0000245 xref: MA:0000858 xref: ncithesaurus:Pituitary_Stalk xref: ZFA:0001199 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0002435 name: striatum alt_id: UBERON:MA_0000891-FMA_77618 def: "The striatum is a large cluster of dopaminergic nerve cells, consisting of the caudate nucleus and the putamen, that controls movement, balance, and walking[GO]." [Wikipedia:Striatum] subset: uberon_slim synonym: "corpus striatum" RELATED [MA:0000891] xref: EFO:0000109 xref: FMA:77618 xref: MA:0000891 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0002420 ! basal ganglia [Term] id: UBERON:0002436 name: primary visual cortex alt_id: UBERON:MA_0000914-FMA_236871 def: "." [Wikipedia:Primary_visual_cortex] subset: uberon_slim synonym: "area striata" RELATED [] synonym: "BA17" RELATED [Wikipedia:Visual_cortex] synonym: "Brodmann area 17" RELATED [Wikipedia:Visual_cortex] synonym: "Primary visual cortex" EXACT [FMA:236871] synonym: "striate cortex" EXACT [FMA:236871] synonym: "v1" RELATED [] xref: FMA:236871 xref: MA:0000914 xref: NIF_GrossAnatomy:birnlex_1748 is_a: UBERON:0003208 relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0002437 name: cerebral white matter alt_id: UBERON:MA_0000945-FMA_241998 xref: BTO:0000236 xref: FMA:241998 xref: MA:0000945 xref: ncithesaurus:Cerebral_White_Matter is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0002438 name: ventral tegmental nucleus alt_id: UBERON:MA_0001031-FMA_72435 synonym: "Anterior tegmental nuclei" EXACT [FMA:72435] synonym: "anterior tegmental nuclei" EXACT [] synonym: "Anterior tegmental nucleus" EXACT [FMA:72435] synonym: "anterior tegmental nucleus" EXACT [] synonym: "Deep tegmental nucleus of Gudden" EXACT [FMA:72435] synonym: "deep tegmental nucleus of gudden" EXACT [] synonym: "nucleus of gudden" RELATED [MA:0001031] synonym: "Ventral raphe tegmental nucleus" EXACT [FMA:72435] synonym: "ventral raphe tegmental nucleus" EXACT [] synonym: "Ventral tegmental nuclei" EXACT [FMA:72435] synonym: "ventral tegmental nuclei" EXACT [] synonym: "Ventral tegmental nucleus (Gudden)" EXACT [FMA:72435] synonym: "ventral tegmental nucleus (gudden)" EXACT [] synonym: "Ventral tegmental nucleus of Gudden" EXACT [FMA:72435] synonym: "ventral tegmental nucleus of gudden" EXACT [] xref: FMA:72435 xref: MA:0001031 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0000988 ! pons relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002439 name: myenteric nerve plexus alt_id: UBERON:MA_0001148-FMA_63252 def: "." [Wikipedia:Auerbach's_plexus] subset: uberon_slim synonym: "Auerbach's plexus" EXACT [FMA:63252] synonym: "auerbach's plexus" RELATED [MA:0001148] synonym: "Meissner's plexus" EXACT [FMA:63252] synonym: "meissner's plexus" EXACT [] synonym: "Myenteric plexus" EXACT [FMA:63252] synonym: "myenteric plexus" EXACT [] synonym: "Remak's plexus" EXACT [FMA:63252] synonym: "remak's plexus" EXACT [] synonym: "Submucous nerve plexus" EXACT [FMA:63252] synonym: "submucous nerve plexus" EXACT [] synonym: "Submucous plexus" EXACT [FMA:63252] synonym: "submucous plexus" EXACT [] xref: BTO:0002436 xref: FMA:63252 xref: MA:0001148 xref: ncithesaurus:Submucous_Nerve_Plexus is_a: UBERON:0001816 ! autonomic nerve plexus [Term] id: UBERON:0002440 name: inferior cervical ganglion alt_id: UBERON:MA_0001154-FMA_6961 def: "." [Wikipedia:Inferior_cervical_ganglion] subset: uberon_slim synonym: "stellate ganglion" RELATED [MA:0001154] synonym: "Variant cervical ganglion" EXACT [FMA:6961] synonym: "variant cervical ganglion" EXACT [] xref: BTO:0000240 xref: EHDAA:8939 xref: FMA:6961 xref: MA:0001154 is_a: UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0002441 name: cervicothoracic ganglion alt_id: UBERON:MA_0001157-FMA_6469 def: "." [Wikipedia:Cervicothoracic_ganglion] subset: uberon_slim synonym: "Cervicothoracic sympathetic ganglion" EXACT [FMA:6469] synonym: "cervicothoracic sympathetic ganglion" EXACT [] synonym: "Stellate ganglion" EXACT [FMA:6469] synonym: "stellate ganglion" EXACT [] xref: BTO:0001815 xref: FMA:6469 xref: MA:0001157 is_a: UBERON:0001991 ! cervical ganglion relationship: part_of UBERON:0001991 ! cervical ganglion [Term] id: UBERON:0002442 name: axillary nerve trunk alt_id: UBERON:MA_0001175-FMA_65265 synonym: "Axillary nerve trunk" EXACT [FMA:65265] synonym: "circumflex nerve trunk" RELATED [MA:0001175] synonym: "Right axillary neural trunk" EXACT [FMA:65265] synonym: "right axillary neural trunk" EXACT [] xref: FMA:65265 xref: MA:0001175 is_a: UBERON:0001147 ! trunk of peripheral nerve [Term] id: UBERON:0002443 name: choroidal blood vessel alt_id: UBERON:MA_0001237-FMA_76550 synonym: "Choroid blood vessels" EXACT [FMA:76550] synonym: "choroid blood vessels" EXACT [] synonym: "Choroid blood vessels set" EXACT [FMA:76550] synonym: "choroid blood vessels set" EXACT [] xref: FMA:76550 xref: MA:0001237 is_a: UBERON:0001981 ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001776 ! choroid relationship: part_of UBERON:0001776 ! choroid [Term] id: UBERON:0002444 name: lens fiber alt_id: UBERON:MA_0001304-FMA_76827 def: "The lens fibers form the bulk of the lens. They are long, thin, transparent cells, with diameters typically between 4-7 micrometres and lengths of up to 12 mm long." [Wikipedia:Lens_(anatomy)#Lens_fibers] synonym: "Lens fibers" EXACT [FMA:76827] synonym: "lens fibers" EXACT [] synonym: "Lens fibers set" EXACT [FMA:76827] synonym: "lens fibers set" EXACT [] synonym: "Lens fibres" EXACT [FMA:76827] synonym: "lens fibres" EXACT [] xref: BTO:0000724 xref: EHDAA:4745 xref: EHDAA:9065 xref: FMA:76827 xref: HOG:0000444 xref: MA:0001304 xref: ncithesaurus:Lens_Fiber is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000965 ! lens [Term] id: UBERON:0002445 name: triquetral alt_id: UBERON:MA_0001347-FMA_23715 def: "." [Wikipedia:Triquetral] subset: uberon_slim synonym: "Cuneiform bone of hand" EXACT [FMA:23715] synonym: "cuneiform bone of hand" EXACT [] synonym: "cuneiform of hand" RELATED [MA:0001347] synonym: "triangular" RELATED [MA:0001347] synonym: "Triangular bone" EXACT [FMA:23715] synonym: "triangular bone" EXACT [] synonym: "Triquetral bone" EXACT [FMA:23715] synonym: "triquetral bone" EXACT [] synonym: "Triquetrum" EXACT [FMA:23715] synonym: "triquetrum" RELATED [MA:0001347] synonym: "ulnar carpal bone" RELATED [MA:0001347] xref: FMA:23715 xref: MA:0001347 xref: ncithesaurus:Triangular_Bone is_a: UBERON:0001480 ! proximal carpal bone relationship: constitutional_part_of UBERON:0001462 ! wrist [Term] id: UBERON:0002446 name: patella alt_id: UBERON:MA_0001374-FMA_24485 def: "." [Wikipedia:Patella] comment: TODO: CHECK THIS ONE subset: uberon_slim synonym: "Knee bone" EXACT [FMA:24485] synonym: "knee bone" EXACT [] xref: FMA:24485 xref: MA:0000666 xref: MA:0001374 xref: ncithesaurus:Patella is_a: UBERON:0001479 ! sesamoid bone is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone intersection_of: UBERON:0001474 ! bone intersection_of: adjacent_to UBERON:0000981 ! femur intersection_of: part_of UBERON:0001465 ! knee [Term] id: UBERON:0002447 name: palatine gland alt_id: UBERON:MA_0001584-FMA_71616 def: "." [Wikipedia:Palatine_gland] subset: uberon_slim synonym: "Palatine glands" EXACT [FMA:71616] synonym: "palatine glands" EXACT [] synonym: "Palatine glands set" EXACT [FMA:71616] synonym: "palatine glands set" EXACT [] xref: FMA:71616 xref: MA:0001584 is_a: UBERON:0001830 ! minor salivary gland [Term] id: UBERON:0002448 name: fungiform papilla alt_id: UBERON:MA_0001595-FMA_71448 def: "." [Wikipedia:Fungiform_papilla] subset: uberon_slim synonym: "Fungiform papillae" EXACT [FMA:71448] synonym: "fungiform papillae" EXACT [] synonym: "Fungiform papillae set" EXACT [FMA:71448] synonym: "fungiform papillae set" EXACT [] xref: FMA:71448 xref: MA:0001595 xref: ncithesaurus:Fungiform_Papilla is_a: UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0002449 name: renal pyramid alt_id: UBERON:MA_0001654-FMA_258870 def: "." [Wikipedia:Renal_pyramid] subset: uberon_slim xref: BTO:0003926 xref: FMA:258870 xref: MA:0001654 xref: ncithesaurus:Renal_Pyramid is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0002450 name: decidua alt_id: UBERON:MA_0001722-MIAA_0000290 def: "Uterine lining (endometrium) during a pregnancy, which forms the maternal part of the placenta. It is formed under the influence of progesterone and forms highly-characteristic cells." [Wikipedia:Decidua] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "decidua basalis" RELATED [] synonym: "endometrium" RELATED [] xref: BTO:0001360 xref: FMA:85538 xref: GAID:378 xref: MA:0001722 xref: MAT:0000290 xref: MIAA:0000290 xref: ncithesaurus:Decidua is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001987 ! placenta [Term] id: UBERON:0002451 name: uterine gland alt_id: UBERON:MA_0001726-FMA_71647 def: "tube like gland lined by ciliated columnar epithelium. lined by ciliated columnar epithelium." [Wikipedia:Uterine_glands] subset: uberon_slim synonym: "Uterine glands" EXACT [FMA:71647] synonym: "uterine glands" EXACT [] synonym: "Uterine glands set" EXACT [FMA:71647] synonym: "uterine glands set" EXACT [] xref: FMA:71647 xref: MA:0001726 xref: ncithesaurus:Uterine_Gland is_a: UBERON:0002530 ! gland relationship: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0002453 name: ethmoid sinus alt_id: UBERON:MA_0001792-FMA_84115 def: "." [Wikipedia:Ethmoid_sinus] subset: uberon_slim xref: FMA:84115 xref: MA:0001792 xref: ncithesaurus:Ethmoid_Sinus is_a: UBERON:0001825 ! paranasal sinus [Term] id: UBERON:0002454 name: dorsal metacarpal artery alt_id: UBERON:MA_0001944-FMA_70800 def: "." [Wikipedia:Dorsal_metacarpal_artery] subset: uberon_slim synonym: "Dorsal metacarpal arteries" EXACT [FMA:70800] synonym: "dorsal metacarpal arteries" EXACT [] synonym: "Dorsal metacarpal arteries set" EXACT [FMA:70800] synonym: "dorsal metacarpal arteries set" EXACT [] xref: FMA:70800 xref: MA:0001944 xref: ncithesaurus:Dorsal_Metacarpal_Artery is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002455 name: common plantar digital arteries alt_id: UBERON:MA_0001966-FMA_70821 def: "." [Wikipedia:Common_plantar_digital_arteries] subset: uberon_slim synonym: "Common plantar digital arteries" EXACT [FMA:70821] synonym: "Common plantar digital arteries set" EXACT [FMA:70821] synonym: "common plantar digital arteries set" EXACT [] xref: FMA:70821 xref: MA:0001966 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002456 name: internal thoracic artery alt_id: UBERON:MA_0001984-FMA_3960 def: "." [Wikipedia:Internal_thoracic_artery] subset: uberon_slim synonym: "Internal mammary artery" EXACT [FMA:3960] synonym: "internal mammary artery" EXACT [] synonym: "Internal thoracic mammary artery" EXACT [FMA:3960] synonym: "internal thoracic mammary artery" EXACT [] xref: EHDAA:8585 xref: FMA:3960 xref: MA:0001984 xref: ncithesaurus:Internal_Mammary_Artery xref: OpenCyc:Mx4rMe0MIao8EduQrwACs5b6Bw is_a: UBERON:0001637 ! artery is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel relationship: branch_of UBERON:0001533 ! subclavian artery relationship: part_of UBERON:0001533 ! subclavian artery [Term] id: UBERON:0002457 name: intersegmental artery alt_id: UBERON:MA_0001985-ZFA_0001061 xref: EHDAA:4340 xref: HOG:0000225 xref: MA:0001985 xref: ZFA:0001061 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002458 name: spinal artery alt_id: UBERON:MA_0002043-ZFA_0000682 def: "." [Wikipedia:Spinal_artery] subset: uberon_slim synonym: "spinal arteries" RELATED [ZFA:0000682] xref: EHDAA:4355 xref: MA:0002043 xref: ncithesaurus:Spinal_Artery xref: ZFA:0000682 is_a: UBERON:0001637 ! artery is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0002459 name: inferior palpebral vein alt_id: UBERON:MA_0002147-FMA_70847 synonym: "Inferior palpebral veins" EXACT [FMA:70847] synonym: "inferior palpebral veins" EXACT [] synonym: "Inferior palpebral veins set" EXACT [FMA:70847] synonym: "inferior palpebral veins set" EXACT [] synonym: "lower palpebral vein" RELATED [MA:0002147] xref: FMA:70847 xref: MA:0002147 xref: ncithesaurus:Inferior_Palpebral_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002460 name: vesical vein alt_id: UBERON:MA_0002263-FMA_70911 def: "." [Wikipedia:Vesical_vein] subset: uberon_slim synonym: "Vesical veins" EXACT [FMA:70911] synonym: "vesical veins" EXACT [] synonym: "Vesical veins set" EXACT [FMA:70911] synonym: "vesical veins set" EXACT [] xref: FMA:70911 xref: MA:0002263 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0002461 name: anterior abdominal wall muscle alt_id: UBERON:MA_0002268-FMA_20278 synonym: "Anterior abdominal wall muscle" EXACT [FMA:20278] xref: FMA:20278 xref: MA:0002268 xref: ncithesaurus:Anterior_Abdominal_Wall_Muscle is_a: UBERON:0002378 ! muscle of abdomen [Term] id: UBERON:0002462 name: erector spinae alt_id: UBERON:MA_0002289-FMA_71302 def: "." [Wikipedia:Erector_spinae] subset: uberon_slim synonym: "Erector spinae" EXACT [FMA:71302] xref: FMA:71302 xref: HOG:0000984 xref: MA:0002289 xref: ncithesaurus:Erector_Spinae is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0002463 name: hamstring muscle alt_id: UBERON:MA_0002312-FMA_81022 def: "." [Wikipedia:Hamstring_muscles] subset: uberon_slim synonym: "Hamstring muscles" EXACT [FMA:81022] synonym: "hamstring muscles" EXACT [] synonym: "Hamstring muscles set" EXACT [FMA:81022] synonym: "hamstring muscles set" EXACT [] synonym: "Hamstrings" EXACT [FMA:81022] synonym: "hamstrings" EXACT [] xref: BTO:0003179 xref: EHDAA:8295 xref: FMA:81022 xref: HOG:0000844 xref: MA:0002312 xref: ncithesaurus:Hamstring xref: OpenCyc:Mx4rvVjdtJwpEbGdrcN5Y29ycA is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0002464 name: nerve trunk alt_id: UBERON:MA_0002408-FMA_5913 synonym: "Trunk of nerve" EXACT [FMA:5913] synonym: "trunk of nerve" EXACT [] xref: BTO:0000927 xref: EHDAA:4675 xref: FMA:5913 xref: MA:0002408 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002465 name: lymphoid system alt_id: UBERON:MA_0002435-FMA_74594 def: "The lymphatic system in vertebrates is a network of conduits that carry a clear fluid called lymph. It also includes the lymphoid tissue through which the lymph travels. Lymphoid tissue is found in many organs, particularly the lymph nodes, and in the lymphoid follicles associated with the digestive system such as the tonsils. The system also includes all the structures dedicated to the circulation and production of lymphocytes, which includes the spleen, thymus, bone marrow and the lymphoid tissue associated with the digestive system (Wikipedia)." [Wikipedia:Lymphoid_system] subset: uberon_slim synonym: "lymphatic system" EXACT [MA:0002435] xref: EFO:0000870 xref: FMA:74594 xref: HOG:0000842 xref: MA:0002435 xref: ncithesaurus:Lymphatic_System is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0002405 ! immune system relationship: systemic_part_of UBERON:0002193 ! hemolymphoid system [Term] id: UBERON:0002466 name: intestine secretion alt_id: UBERON:MA_0002515-FMA_62974 def: "Clear to pale yellow watery secretions from the glands lining the small intestine walls. Secretion is stimulated by the mechanical pressure of partly digested food in the intestine." [Wikipedia:Succus_entericus] subset: uberon_slim synonym: "Succus entericus" EXACT [FMA:62974] synonym: "succus entericus" EXACT [] xref: FMA:62974 xref: MA:0002515 xref: ncithesaurus:Intestinal_Secretion is_a: UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0002467 name: filiform papilla alt_id: UBERON:MA_0002678-FMA_71447 def: "." [Wikipedia:Filiform_papilla] subset: uberon_slim synonym: "Filiform papillae" EXACT [FMA:71447] synonym: "filiform papillae" EXACT [] synonym: "Filiform papillae set" EXACT [FMA:71447] synonym: "filiform papillae set" EXACT [] xref: FMA:71447 xref: MA:0002678 xref: ncithesaurus:Filiform_Papilla is_a: UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0002468 name: foliate papilla alt_id: UBERON:MA_0002679-FMA_71450 def: "." [Wikipedia:Foliate_papilla] subset: uberon_slim synonym: "Foliate papillae" EXACT [FMA:71450] synonym: "foliate papillae" EXACT [] synonym: "Foliate papillae set" EXACT [FMA:71450] synonym: "foliate papillae set" EXACT [] xref: FMA:71450 xref: MA:0002679 xref: ncithesaurus:Foliate_Papilla is_a: UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0002469 name: esophagus mucosa alt_id: UBERON:0003345 alt_id: UBERON:MA_0002680-FMA_62996 synonym: "esophageal mucosa" EXACT [] synonym: "esophagus mucosa" EXACT [FMA:62996] synonym: "mucous membrane of esophagus" EXACT [] synonym: "mucous membrane of oesophagus" EXACT [FMA:62996] synonym: "muscularis mucosae of oesophagus" EXACT [FMA:62996] synonym: "oesophageal mucosa" EXACT [FMA:62996] synonym: "oesophagus mucosa" EXACT [] xref: BTO:0002859 xref: EMAPA:26981 xref: EMAPA:26991 xref: FMA:62996 xref: MA:0002680 xref: ncithesaurus:Esophageal_Mucosa is_a: UBERON:0000064 ! organ part is_a: UBERON:0000344 ! implied link automatically realized ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001043 ! esophagus relationship: constitutional_part_of UBERON:0001096 ! wall of esophagus relationship: part_of UBERON:0001096 ! wall of esophagus [Term] id: UBERON:0002470 name: autopod alt_id: UBERON:MA_0002714-MIAA_0000091 def: "Terminal segment of free upper limb. The generic name for hand, paw, foot etc" [UBERON:cjm] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "distal free limb segment" EXACT [] synonym: "paw" RELATED [] synonym: "pod" RELATED [] xref: EFO:0000877 xref: FMA:83015 xref: MA:0002714 xref: MAT:0000091 xref: MIAA:0000091 is_a: UBERON:0002529 ! limb segment [Term] id: UBERON:0002471 name: zeugopod alt_id: UBERON:MA_0002716-MIAA_0000092 def: "The middle part of the limb (e.g. between the elbow and wrist)" [] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "middle limb segment" EXACT [] synonym: "middle part of limb" BROAD [] xref: EFO:0000878 xref: MA:0002716 xref: MAT:0000092 xref: MIAA:0000092 is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0002472 name: stylopod alt_id: UBERON:MA_0002717-MIAA_0000093 def: "Limb segment that is the proximal part of the limb (e.g. between shoulder and elbow)." [] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "proximal part of limb" BROAD [] xref: EFO:0000879 xref: MA:0002717 xref: MAT:0000093 xref: MIAA:0000093 is_a: UBERON:0002529 ! limb segment relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0002473 name: intercerebral commissure alt_id: UBERON:MA_0002721-FMA_67930 synonym: "interhemispheric commissure" RELATED [MA:0002721] xref: FMA:67930 xref: MA:0002721 is_a: UBERON:0001020 ! commissure is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001893 ! telencephalon relationship: part_of UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002474 name: cerebellar peduncle alt_id: UBERON:MA_0002742-FMA_77791 def: "." [Wikipedia:Cerebellar_peduncle] subset: uberon_slim synonym: "Cerebellar peduncles" EXACT [FMA:77791] synonym: "cerebellar peduncles" EXACT [] synonym: "Cerebellar peduncles set" EXACT [FMA:77791] synonym: "cerebellar peduncles set" EXACT [] xref: FMA:77791 xref: MA:0002742 is_a: UBERON:0002317 ! white matter of cerebellum [Term] id: UBERON:0002475 name: saphenous nerve alt_id: UBERON:MA_0002761-FMA_45262 def: "." [Wikipedia:Saphenous_nerve] subset: uberon_slim xref: FMA:45262 xref: MA:0002761 xref: OpenCyc:Mx4rvY0kgpwpEbGdrcN5Y29ycA is_a: UBERON:0002003 ! peripheral nerve relationship: branch_of UBERON:0001267 ! femoral nerve [Term] id: UBERON:0002476 name: lateral globus pallidus alt_id: UBERON:MA_0002767-FMA_61839 def: "." [Wikipedia:Lateral_globus_pallidus] subset: uberon_slim synonym: "External globus pallidus" EXACT [FMA:61839] synonym: "external globus pallidus" EXACT [] synonym: "Globus pallidus external segment" EXACT [FMA:61839] synonym: "globus pallidus external segment" RELATED [MA:0002767] synonym: "Globus pallidus externus" EXACT [FMA:61839] synonym: "globus pallidus externus" EXACT [] synonym: "Globus pallidus lateral segment" EXACT [FMA:61839] synonym: "globus pallidus lateral segment" RELATED [MA:0002767] synonym: "Globus pallidus, lateral segment" EXACT [FMA:61839] synonym: "globus pallidus, lateral segment" EXACT [] synonym: "Lateral pallidal segment" EXACT [FMA:61839] synonym: "lateral pallidal segment" EXACT [] synonym: "Lateral part of globus pallidus" EXACT [FMA:61839] synonym: "lateral part of globus pallidus" EXACT [] synonym: "Pallidus II" EXACT [FMA:61839] synonym: "pallidus ii" EXACT [] xref: FMA:61839 xref: MA:0002767 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001875 ! globus pallidus [Term] id: UBERON:0002477 name: medial globus pallidus alt_id: UBERON:MA_0002768-FMA_61840 def: "." [Wikipedia:Medial_globus_pallidus] subset: uberon_slim synonym: "entopeduncular nucleus" RELATED [MA:0002768] synonym: "Entopeduncular nucleus (Monakow)" EXACT [FMA:61840] synonym: "entopeduncular nucleus (monakow)" EXACT [] synonym: "globus pallidus inernal segment" RELATED [MA:0002768] synonym: "Globus pallidus internal segment" EXACT [FMA:61840] synonym: "globus pallidus internal segment" EXACT [] synonym: "Globus pallidus internus" EXACT [FMA:61840] synonym: "globus pallidus internus" EXACT [] synonym: "Globus pallidus medial segment" EXACT [FMA:61840] synonym: "globus pallidus medial segment" RELATED [MA:0002768] synonym: "Globus pallidus, medial segment" EXACT [FMA:61840] synonym: "globus pallidus, medial segment" EXACT [] synonym: "Internal globus pallidus" EXACT [FMA:61840] synonym: "internal globus pallidus" EXACT [] synonym: "Medial pallidal segment" EXACT [FMA:61840] synonym: "medial pallidal segment" EXACT [] synonym: "Medial part of globus pallidus" EXACT [FMA:61840] synonym: "medial part of globus pallidus" EXACT [] synonym: "Mesial pallidum" EXACT [FMA:61840] synonym: "mesial pallidum" EXACT [] synonym: "Pallidus I" EXACT [FMA:61840] synonym: "pallidus i" EXACT [] xref: FMA:61840 xref: MA:0002768 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001875 ! globus pallidus [Term] id: UBERON:0002478 name: orbitosphenoid alt_id: UBERON:MA_0002773-ZFA_0000253 synonym: "lesser wing of sphenoid bone" RELATED [MA:0002773] xref: AAO:0000345 xref: HOG:0001153 xref: MA:0002773 xref: ZFA:0000253 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0001677 ! sphenoid bone [Term] id: UBERON:0002479 name: dorsal lateral geniculate nucleus alt_id: UBERON:MA_0002775-FMA_62214 synonym: "Dorsal lateral geniculate nucleus" EXACT [FMA:62214] synonym: "dorsal nucleus of lateral geniculate body" RELATED [MA:0002775] synonym: "Lateral geniculate complex, dorsal part" EXACT [FMA:62214] synonym: "lateral geniculate complex, dorsal part" EXACT [] xref: FMA:62214 xref: MA:0002775 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001926 ! lateral geniculate body [Term] id: UBERON:0002480 name: ventral lateral geniculate nucleus alt_id: UBERON:MA_0002776-FMA_62215 synonym: "Lateral geniculate complex, ventral part" EXACT [FMA:62215] synonym: "lateral geniculate complex, ventral part" EXACT [] synonym: "Pregeniculate nucleus" EXACT [FMA:62215] synonym: "pregeniculate nucleus" EXACT [] synonym: "Ventral lateral geniculate nucleus" EXACT [FMA:62215] synonym: "ventral nucleus of lateral geniculate body" RELATED [MA:0002776] xref: FMA:62215 xref: MA:0002776 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001926 ! lateral geniculate body [Term] id: UBERON:0002481 name: bone tissue alt_id: UBERON:MA_0002780-FMA_224804 def: "." [Wikipedia:Bone_tissue] subset: uberon_slim xref: FMA:224804 xref: galen:BoneTissue xref: MA:0002780 xref: ncithesaurus:Bone_Tissue is_a: UBERON:0002384 ! connective tissue relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0002482 name: lamellar bone alt_id: UBERON:MA_0002781-FMA_224806 xref: FMA:224806 xref: galen:LamellarBone xref: MA:0002781 is_a: UBERON:0002481 ! bone tissue [Term] id: UBERON:0002483 name: trabecular bone alt_id: UBERON:MA_0002782-FMA_24019 def: "." [Wikipedia:Trabecular_bone] subset: uberon_slim synonym: "Cancellous bone" EXACT [FMA:24019] synonym: "cancellous bone" RELATED [MA:0002782] synonym: "Spongy bone" EXACT [FMA:24019] synonym: "spongy bone" EXACT [] synonym: "Trabecular bone tissue" EXACT [FMA:24019] synonym: "trabecular bone tissue" EXACT [] xref: BTO:0001700 xref: FMA:24019 xref: MA:0002782 is_a: UBERON:0002481 ! bone tissue [Term] id: UBERON:0002484 name: bone marrow cavity alt_id: UBERON:MA_0002783-FMA_75147 synonym: "Cavity of cancellous bone" EXACT [FMA:75147] synonym: "cavity of cancellous bone" EXACT [] xref: FMA:75147 xref: MA:0002783 is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0001439 ! compact bone [Term] id: UBERON:0002485 name: prostate duct alt_id: UBERON:MA_0002785-FMA_19580 synonym: "Duct of prostate" EXACT [FMA:19580] synonym: "duct of prostate" EXACT [] synonym: "Duct of prostate gland" EXACT [FMA:19580] synonym: "duct of prostate gland" EXACT [] xref: FMA:19580 xref: MA:0002785 xref: ncithesaurus:Prostatic_Duct is_a: UBERON:0000058 ! duct intersection_of: UBERON:0000058 ! duct intersection_of: part_of UBERON:0002367 ! prostate relationship: part_of UBERON:0002367 ! prostate [Term] id: UBERON:0002486 name: glottis alt_id: UBERON:MA_0002788-FMA_55414 def: "." [Wikipedia:Glottis] subset: uberon_slim xref: BTO:0001627 xref: FMA:55414 xref: MA:0002788 xref: ncithesaurus:Glottis is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0002487 name: tooth cavity alt_id: UBERON:MA_0002792-FMA_55660 def: "." [Wikipedia:Tooth_cavity] subset: uberon_slim synonym: "Cavitas dentis" EXACT [FMA:55660] synonym: "cavitas dentis" EXACT [] synonym: "cavity of tooth" RELATED [MA:0002792] synonym: "Pulp cavity" EXACT [FMA:55660] synonym: "pulp cavity" EXACT [] synonym: "Pulp cavity of tooth" EXACT [FMA:55660] synonym: "pulp cavity of tooth" EXACT [] synonym: "Tooth cavity" EXACT [FMA:55660] synonym: "tooth pulp cavity" RELATED [MA:0002792] xref: FMA:55660 xref: MA:0002792 is_a: UBERON:0002558 ! organ cavity relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0002488 name: helix alt_id: UBERON:MA_0002793-FMA_60992 def: "." [Wikipedia:Helix] subset: uberon_slim synonym: "Helical part of pinna" EXACT [FMA:60992] synonym: "helical part of pinna" EXACT [] synonym: "Helix (Auricula)" EXACT [FMA:60992] synonym: "helix (auricula)" EXACT [] synonym: "Helix of auricle of ear" EXACT [FMA:60992] synonym: "helix of auricle of ear" EXACT [] synonym: "Helix of ear" EXACT [FMA:60992] synonym: "helix of ear" EXACT [] synonym: "Helix of pinna" EXACT [FMA:60992] synonym: "helix of pinna" EXACT [] xref: FMA:60992 xref: MA:0002793 xref: ncithesaurus:Helix is_a: UBERON:0001444 ! subdivision of head relationship: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0002489 name: coronal suture alt_id: UBERON:MA_0002795-FMA_52928 def: "." [Wikipedia:Coronal_suture] subset: uberon_slim synonym: "Coronal suture of skull" EXACT [FMA:52928] synonym: "coronal suture of skull" EXACT [] xref: FMA:52928 xref: MA:0002795 xref: OpenCyc:Mx4rv2eGHZwpEbGdrcN5Y29ycA is_a: UBERON:0000969 ! suture relationship: systemic_part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0002490 name: frontal suture alt_id: UBERON:MA_0002796-FMA_52989 def: "." [Wikipedia:Frontal_suture] subset: uberon_slim synonym: "Frontal suture of skull" EXACT [FMA:52989] synonym: "frontal suture of skull" EXACT [] synonym: "Metopic suture" EXACT [FMA:52989] synonym: "metopic suture" RELATED [MA:0002796] synonym: "Sutura frontalis" EXACT [FMA:52989] synonym: "sutura frontalis" EXACT [] xref: FMA:52989 xref: MA:0002796 is_a: UBERON:0000969 ! suture [Term] id: UBERON:0002491 name: lambdoid suture alt_id: UBERON:MA_0002797-FMA_52933 def: "." [Wikipedia:Lambdoid_suture] subset: uberon_slim synonym: "Lambdoid suture of skull" EXACT [FMA:52933] synonym: "lambdoid suture of skull" EXACT [] synonym: "lambdoidal suture" RELATED [MA:0002797] xref: FMA:52933 xref: MA:0002797 is_a: UBERON:0000969 ! suture relationship: systemic_part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0002492 name: sagittal suture alt_id: UBERON:MA_0002798-FMA_52929 def: "." [Wikipedia:Sagittal_suture] subset: uberon_slim synonym: "Sagittal suture of skull" EXACT [FMA:52929] synonym: "sagittal suture of skull" EXACT [] xref: FMA:52929 xref: MA:0002798 is_a: UBERON:0000969 ! suture relationship: systemic_part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0002493 name: uterine artery alt_id: UBERON:MA_0002799-FMA_18829 def: "." [Wikipedia:Uterine_artery] subset: uberon_slim xref: FMA:18829 xref: MA:0002799 is_a: UBERON:0001637 ! artery is_a: UBERON:0003520 ! implied link automatically realized ! pelvis blood vessel intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0002494 name: papillary muscle alt_id: UBERON:MA_0002800-FMA_12154 def: "." [Wikipedia:Papillary_muscle] subset: uberon_slim synonym: "Papillary muscle of ventricle" EXACT [FMA:12154] synonym: "papillary muscle of ventricle" RELATED [MA:0002800] synonym: "ventricular papillary muscle" RELATED [MA:0002800] xref: EHDAA:8655 xref: FMA:12154 xref: HOG:0001392 xref: MA:0002800 xref: ncithesaurus:Papillary_Muscle xref: OpenCyc:Mx4rDid0jLYYEduAAAACs2IKfQ is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0002082 ! cardiac ventricle [Term] id: UBERON:0002495 name: long bone alt_id: UBERON:MA_0002802-FMA_7474 def: "." [Wikipedia:Long_bone] subset: uberon_slim xref: FMA:7474 xref: MA:0002802 xref: ncithesaurus:Long_Bone xref: OpenCyc:Mx4rv6axr5wpEbGdrcN5Y29ycA is_a: UBERON:0001474 ! bone relationship: part_of UBERON:0002091 ! appendicular skeleton relationship: systemic_part_of UBERON:0001434 ! skeleton [Term] id: UBERON:0002496 name: stapes base alt_id: UBERON:MA_0002804-FMA_52769 def: "." [Wikipedia:Footplate] subset: uberon_slim synonym: "base of stapes" RELATED [MA:0002804] synonym: "Footplate" EXACT [FMA:52769] synonym: "footplate" EXACT [] synonym: "Stapes base" EXACT [FMA:52769] synonym: "stapes footplate" RELATED [MA:0002804] xref: EHDAA:5143 xref: EHDAA:6096 xref: FMA:52769 xref: MA:0002804 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001687 ! stapes [Term] id: UBERON:0002497 name: acromion alt_id: UBERON:MA_0002805-FMA_23260 def: "." [Wikipedia:Acromion] subset: uberon_slim xref: AAO:0000826 xref: FMA:23260 xref: MA:0002805 xref: ncithesaurus:Acromion is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001124 ! scapula [Term] id: UBERON:0002498 name: deltoid tuberosity alt_id: UBERON:MA_0002808-FMA_23418 def: "." [Wikipedia:Deltoid_tuberosity] subset: uberon_slim synonym: "Deltoid tuberosity" EXACT [FMA:23418] synonym: "Tuberositas deltoidea (Corpus humeri)" EXACT [FMA:23418] synonym: "tuberositas deltoidea (corpus humeri)" EXACT [] xref: FMA:23418 xref: MA:0002808 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002499 name: cochlear labyrinth alt_id: UBERON:MA_0002809-FMA_61259 def: "." [Wikipedia:Cochlear_labyrinth] subset: uberon_slim xref: FMA:61259 xref: MA:0002809 xref: ncithesaurus:Cochlear_Labyrinth is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001844 ! cochlea relationship: part_of UBERON:0001849 ! membranous labyrinth [Term] id: UBERON:0002500 name: zygomatic arch alt_id: UBERON:MA_0002810-FMA_53120 def: "." [Wikipedia:Zygomatic_arch] subset: uberon_slim synonym: "Zygoma" EXACT [FMA:53120] synonym: "zygoma" EXACT [] xref: FMA:53120 xref: MA:0002810 xref: ncithesaurus:Zygomatic_Arch is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0002501 name: oval window alt_id: UBERON:MA_0002813-FMA_56913 def: "." [Wikipedia:Oval_window] subset: uberon_slim synonym: "Oval window of petrous part of temporal bone" EXACT [FMA:56913] synonym: "oval window of petrous part of temporal bone" EXACT [] synonym: "Vestibular window" EXACT [FMA:56913] synonym: "vestibular window" RELATED [MA:0002813] xref: FMA:56913 xref: MA:0002813 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001694 ! petrous part of temporal bone [Term] id: UBERON:0002502 name: round window alt_id: UBERON:MA_0002814-FMA_56932 def: "." [Wikipedia:Round_window] subset: uberon_slim synonym: "Cochlear window" EXACT [FMA:56932] synonym: "cochlear window" RELATED [MA:0002814] synonym: "Round window of petrous part of temporal bone" EXACT [FMA:56932] synonym: "round window of petrous part of temporal bone" EXACT [] xref: FMA:56932 xref: MA:0002814 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001694 ! petrous part of temporal bone [Term] id: UBERON:0002503 name: greater trochanter alt_id: UBERON:MA_0002822-FMA_32852 def: "." [Wikipedia:Greater_trochanter] subset: uberon_slim synonym: "Greater trochanter of femur" EXACT [FMA:32852] synonym: "greater trochanter of femur" EXACT [] xref: FMA:32852 xref: galen:GreaterTrochanter xref: MA:0002822 is_a: UBERON:0000980 ! trochanter [Term] id: UBERON:0002504 name: lesser trochanter alt_id: UBERON:MA_0002823-FMA_32853 def: "." [Wikipedia:Lesser_trochanter] subset: uberon_slim synonym: "Lesser trochanter of femur" EXACT [FMA:32853] synonym: "lesser trochanter of femur" EXACT [] xref: FMA:32853 xref: galen:LesserTrochanter xref: MA:0002823 xref: ncithesaurus:Lesser_Trochanter is_a: UBERON:0000980 ! trochanter [Term] id: UBERON:0002505 name: spiral modiolar artery alt_id: UBERON:MA_0002824-FMA_52312 xref: FMA:52312 xref: MA:0002824 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0002506 name: iris epithelium alt_id: UBERON:MA_0002826-FMA_58517 synonym: "Epithelium pigmentosum (Iris)" EXACT [FMA:58517] synonym: "epithelium pigmentosum (iris)" EXACT [] synonym: "Iris epithelium" EXACT [FMA:58517] synonym: "iris pigmented epithelium" RELATED [MA:0002826] synonym: "Pigmented epithelium of iris" EXACT [FMA:58517] synonym: "pigmented epithelium of iris" EXACT [] xref: FMA:58517 xref: MA:0002826 is_a: UBERON:0000488 ! atypical epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001769 ! iris relationship: part_of UBERON:0001769 ! iris [Term] id: UBERON:0002507 name: abdominal lymph node alt_id: UBERON:MA_0002827-FMA_12787 synonym: "Lymph node of abdomen" EXACT [FMA:12787] synonym: "lymph node of abdomen" EXACT [] xref: FMA:12787 xref: MA:0002827 is_a: UBERON:0000029 ! lymph node intersection_of: UBERON:0000029 ! lymph node intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0002508 name: celiac lymph node alt_id: UBERON:MA_0002828-FMA_12792 def: "." [Wikipedia:Celiac_lymph_node] subset: uberon_slim synonym: "Celiac node" EXACT [FMA:12792] synonym: "celiac node" EXACT [] synonym: "Coeliac node" EXACT [FMA:12792] synonym: "coeliac node" EXACT [] synonym: "Nodus lymphaticus coeliacus" EXACT [FMA:12792] synonym: "nodus lymphaticus coeliacus" EXACT [] synonym: "Terminal ventral aortic node" EXACT [FMA:12792] synonym: "terminal ventral aortic node" EXACT [] xref: FMA:12792 xref: MA:0002828 xref: ncithesaurus:Celiac_Lymph_Node is_a: UBERON:0002507 ! abdominal lymph node [Term] id: UBERON:0002509 name: mesenteric lymph node alt_id: UBERON:MA_0002829-FMA_12795 synonym: "Mesenteric node" EXACT [FMA:12795] synonym: "mesenteric node" EXACT [] xref: BTO:0000767 xref: FMA:12795 xref: MA:0002829 is_a: UBERON:0002507 ! abdominal lymph node [Term] id: UBERON:0002510 name: anterior fontanel alt_id: UBERON:MA_0002830-FMA_75439 xref: FMA:75439 xref: MA:0002830 is_a: UBERON:0002221 ! fontanelle [Term] id: UBERON:0002511 name: trabecula carnea alt_id: UBERON:MA_0002831-FMA_7269 synonym: "heart trabecula" RELATED [] synonym: "trabecula of heart" RELATED [] xref: FMA:7269 xref: MA:0002831 is_a: UBERON:0000440 ! trabecula relationship: part_of UBERON:0000948 ! heart [Term] id: UBERON:0002512 name: corpus luteum alt_id: UBERON:MA_0002834-FMA_18619 def: "." [Wikipedia:Corpus_luteum] subset: uberon_slim synonym: "Corpus luteum of ovary" EXACT [FMA:18619] synonym: "corpus luteum of ovary" EXACT [] xref: BTO:0000292 xref: FMA:18619 xref: MA:0002834 xref: ncithesaurus:Corpus_Luteum is_a: UBERON:0000064 ! organ part relationship: develops_from UBERON:0001305 ! follicle of ovary relationship: part_of UBERON:0000949 ! endocrine system relationship: part_of UBERON:0000992 ! ovary [Term] id: UBERON:0002513 name: endochondral bone alt_id: UBERON:MA_0002836-ZFA_0001591 def: "." [Wikipedia:Endochondral_bone] subset: uberon_slim xref: BTO:0002157 xref: MA:0002836 xref: ZFA:0001591 is_a: UBERON:0001474 ! bone is_a: UBERON:0002481 ! bone tissue [Term] id: UBERON:0002514 name: intramembranous bone alt_id: UBERON:MA_0002837-ZFA_0001635 xref: MA:0002837 xref: ZFA:0001635 is_a: UBERON:0001474 ! bone relationship: develops_from UBERON:0003104 ! mesenchyme [Term] id: UBERON:0002515 name: periosteum alt_id: UBERON:MA_0002838-FMA_24041 def: "." [Wikipedia:Periosteum] subset: uberon_slim xref: BTO:0001022 xref: FMA:24041 xref: MA:0002838 xref: ncithesaurus:Periosteum is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0001474 ! bone [Term] id: UBERON:0002516 name: epiphyseal plate alt_id: UBERON:MA_0002839-FMA_75427 def: "." [Wikipedia:Epiphyseal_plate] subset: uberon_slim synonym: "Epiphyseal plate" EXACT [FMA:75427] synonym: "Growth plate" EXACT [FMA:75427] synonym: "growth plate" RELATED [MA:0002839] xref: FMA:75427 xref: MA:0002839 is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0002517 name: basicranium alt_id: UBERON:MA_0002840-FMA_52801 def: "." [Wikipedia:Base_of_skull] subset: uberon_slim synonym: "Base of skull" EXACT [FMA:52801] synonym: "base of skull" EXACT [] synonym: "Cranial base" EXACT [FMA:52801] synonym: "cranial base" RELATED [MA:0002840] xref: FMA:52801 xref: MA:0002840 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000032 ! cranial structure relationship: systemic_part_of UBERON:0001703 ! neurocranium [Term] id: UBERON:0002518 name: otolith organ alt_id: UBERON:MA_0002841-ZFA_0000559 def: "." [Wikipedia:Otolith_organ] subset: uberon_slim synonym: "otolith organs" RELATED [ZFA:0000559] xref: MA:0002841 xref: ZFA:0000559 relationship: part_of UBERON:0001862 ! vestibular labyrinth [Term] id: UBERON:0002519 name: otolithic membrane alt_id: UBERON:MA_0002842-FMA_75573 def: "." [Wikipedia:Otolithic_membrane] subset: uberon_slim synonym: "Otolithic membrane" EXACT [FMA:75573] xref: FMA:75573 xref: MA:0002842 is_a: UBERON:0000476 ! acellular anatomical structure relationship: part_of UBERON:0001862 ! vestibular labyrinth [Term] id: UBERON:0002520 name: submandibular lymph node alt_id: UBERON:MA_0002843-FMA_61224 def: "." [Wikipedia:Submandibular_lymph_node] subset: uberon_slim synonym: "Level Ib neck node" EXACT [FMA:61224] synonym: "level ib neck node" EXACT [] synonym: "Submandibular node" EXACT [FMA:61224] synonym: "submandibular node" EXACT [] xref: BTO:0000769 xref: FMA:61224 xref: MA:0002843 is_a: UBERON:0000029 ! lymph node [Term] id: UBERON:0002521 name: elastic tissue alt_id: UBERON:MA_0002853-FMA_20113 def: "." [Wikipedia:Elastic_tissue] subset: uberon_slim synonym: "Elastic connective tissue" EXACT [FMA:20113] synonym: "elastic connective tissue" EXACT [] synonym: "Textus connectivus elasticus" EXACT [FMA:20113] synonym: "textus connectivus elasticus" EXACT [] xref: FMA:20113 xref: MA:0002853 is_a: UBERON:0002384 ! connective tissue [Term] id: UBERON:0002522 name: tunica media alt_id: UBERON:MA_0002855-FMA_55590 def: "." [Wikipedia:Tunica_media] subset: uberon_slim xref: FMA:55590 xref: MA:0002855 xref: ncithesaurus:Tunica_Media is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002523 name: tunica intima alt_id: UBERON:MA_0002861-FMA_55589 def: "." [Wikipedia:Tunica_intima] subset: uberon_slim xref: FMA:55589 xref: MA:0002861 xref: ncithesaurus:Tunica_Intima is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002524 name: mediastinal lymph node alt_id: UBERON:MA_0002877-FMA_12774 synonym: "Mediastinal node" EXACT [FMA:12774] synonym: "mediastinal node" EXACT [] xref: EFO:0001670 xref: FMA:12774 xref: MA:0002877 xref: ncithesaurus:Mediastinal_Lymph_Node is_a: UBERON:0000029 ! lymph node [Term] id: UBERON:0002525 name: brachial lymph node alt_id: UBERON:MA_0002878-FMA_44314 xref: FMA:44314 xref: MA:0002878 is_a: UBERON:0000029 ! lymph node [Term] id: UBERON:0002526 name: lumbar lymph node alt_id: UBERON:MA_0002879-FMA_84599 xref: FMA:84599 xref: MA:0002879 is_a: UBERON:0002507 ! abdominal lymph node [Term] id: UBERON:0002527 name: pancreatic lymph node alt_id: UBERON:MA_0002881-FMA_16626 synonym: "Pancreatic node" EXACT [FMA:16626] synonym: "pancreatic node" EXACT [] synonym: "pyloric lymph node" RELATED [MA:0002881] xref: FMA:16626 xref: MA:0002881 is_a: UBERON:0002507 ! abdominal lymph node intersection_of: UBERON:0000029 ! lymph node intersection_of: part_of UBERON:0001264 ! pancreas [Term] id: UBERON:0002528 name: sacral lymph node alt_id: UBERON:MA_0002883-FMA_16655 synonym: "Sacral node" EXACT [FMA:16655] synonym: "sacral node" EXACT [] xref: FMA:16655 xref: MA:0002883 is_a: UBERON:0000029 ! lymph node [Term] id: UBERON:0002529 name: limb segment alt_id: UBERON:MA_0002889-FMA_9661 synonym: "Limb region" EXACT [FMA:9661] synonym: "limb region" EXACT [] synonym: "Region of limb" EXACT [FMA:9661] synonym: "region of limb" EXACT [] synonym: "Segment of limb" EXACT [FMA:9661] synonym: "segment of limb" EXACT [] synonym: "Subdivision of limb" EXACT [FMA:9661] synonym: "subdivision of limb" EXACT [] xref: FMA:9661 xref: MA:0002889 is_a: UBERON:0000914 ! implied link automatically realized ! segment intersection_of: UBERON:0000914 ! segment intersection_of: part_of UBERON:0002101 ! limb relationship: part_of UBERON:0002101 ! limb [Term] id: UBERON:0002530 name: gland alt_id: UBERON:MIAA_0000021 def: "A gland is an organ in an animal's body that synthesizes a substance for release such as hormones or breast milk, often into the bloodstream (endocrine gland) or into cavities inside the body or its outer surface (exocrine gland). A gland is an organ specialised for secretion[GO]." [Wikipedia:Gland, WikiPedia:Gland] comment: none of the major vertebrate ontologies have a class called gland. Is this superfluous? subset: uberon_slim xref: AAO:0000212 xref: BTO:0000522 xref: EFO:0000797 xref: EHDAA:2161 xref: EHDAA:2181 xref: EHDAA:2967 xref: EHDAA:4475 xref: EHDAA:6522 xref: FMA:71481 xref: FMA:86294 xref: galen:Gland xref: HAO:0000375 xref: MAT:0000021 xref: MIAA:0000021 xref: ncithesaurus:Gland is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0002531 name: fin bud alt_id: UBERON:MIAA_0000062-ZFA_0001383 comment: This class was created automatically from a combination of ontologies xref: MAT:0000062 xref: MIAA:0000062 xref: TAO:0001383 xref: ZFA:0001383 is_a: UBERON:0002050 ! embryonic structure is_a: UBERON:0003102 ! surface structure [Term] id: UBERON:0002532 name: epiblast alt_id: UBERON:MIAA_0000067-ZFA_0000018 def: "The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation. Kimmel et al, 1995." [Wikipedia:Epiblast, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "blastocyst" RELATED [] xref: EHDAA:42 xref: EHDAA:75 xref: HOG:0000243 xref: MAT:0000067 xref: MIAA:0000067 xref: ncithesaurus:Epiblast xref: TAO:0000018 xref: ZFA:0000018 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000091 ! bilaminar disc relationship: part_of UBERON:0002541 ! germ ring [Term] id: UBERON:0002533 name: tail bud alt_id: UBERON:MIAA_0000070-XAO_0000107-ZFA_0000077 def: "Rapidly proliferating mass of cells at the caudal extremity of the embryo. Its formation is reflected in a caudal carving of the posterior portion of the archenteric canal at NF stage 22. With its further outgrowth, the postanal gut primordium becomes stretched. Its lumen is in broad communication with the hindgut at NF stage 25." [ISBN:0815318960, OMD:tail+bud] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "tailbud" EXACT [] xref: BTO:0001445 xref: EFO:0002748 xref: EHDAA:1595 xref: HOG:0000201 xref: MAT:0000070 xref: MIAA:0000070 xref: TAO:0000077 xref: XAO:0000107 xref: XAO:1000007 xref: ZFA:0000077 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0002534 name: fin alt_id: UBERON:MIAA_0000087-XAO_0000002-ZFA_0000108 def: "used to produce lift and thrust or to steer while traveling in water, air, or other fluid media. The first use of the word was for the limbs of fish, but has been extended to include other animal limbs and man-made devices. Examples: teleost fin, tadpole fin." [Wikipedia:Fin] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "fins" RELATED [] xref: EFO:0000875 xref: MAT:0000087 xref: MIAA:0000087 xref: OpenCyc:Mx4rvVjcBZwpEbGdrcN5Y29ycA xref: TAO:0000108 xref: XAO:0000002 xref: ZFA:0000108 is_a: UBERON:0003102 ! surface structure relationship: develops_from UBERON:0002531 ! fin bud [Term] id: UBERON:0002535 name: gill alt_id: UBERON:MIAA_0000134-XAO_0000120-ZFA_0000354 def: "Anatomical surface structure found in many aquatic organisms. It is a respiration organ whose function is the extraction of oxygen from water and the excretion of carbon dioxide. The microscopic structure of a gill is such that it presents a very large surface area to the external environment. Gills usually consist of thin filaments of tissue, branches, or slender tufted processes which have a highly folded surface to increase surface area. A high surface area is crucial to the gas exchange of aquatic organisms as water contains only 1/20 parts dissolved Oxygen compared to air. With the exception of some aquatic insects, the filaments and lamellae (folds) contain blood or coelomic fluid, from which gases are exchanged through the thin walls. Oxygen is carried by the blood to other parts of the body. Carbon dioxide passes from the blood through the thin gill tissue into the water. Gills or gill-like organs, located in different parts of the body, are found in various groups of aquatic animals, including mollusks, crustaceans, insects, fish, and amphibians." [Wikipedia:Gill] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "external gill" RELATED [] synonym: "gills" RELATED [] xref: BTO:0000518 xref: EFO:0000933 xref: GAID:1218 xref: HOG:0001214 xref: MAT:0000134 xref: MIAA:0000134 xref: OpenCyc:Mx4rvVi9dZwpEbGdrcN5Y29ycA xref: TAO:0000354 xref: XAO:0000120 xref: ZFA:0000354 is_a: UBERON:0003102 ! surface structure relationship: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0002536 name: arthropod sensillum alt_id: UBERON:MIAA_0000163-WBbt_0006929 def: "Sense organ embedded in the integument and consisting of one or a cluster of sensory neurons and associated sensory structures, support cells and glial cells forming a single organised unit with a largely bona-fide boundary.[FBbt]" [FBbt:00007152, WB:rynl, Wikipedia:Sensillum] subset: uberon_slim synonym: "sensillum" EXACT [FBbt:00007152, HAO:0000933] xref: BTO:0001237 xref: EFO:0000939 xref: FBbt:00007152 xref: HAO:0000933 xref: MAT:0000163 xref: MIAA:0000163 is_a: UBERON:0000020 ! sense organ relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0002537 name: hermaphrodite gonad alt_id: UBERON:MIAA_0000165-WBbt_0005178 def: "organ in hermaphrodite animal that produces both ova and sperm." [WB:rynl] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "ovotestis" RELATED [] xref: EFO:0000971 xref: MAT:0000165 xref: MIAA:0000165 xref: WBbt:0005178 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000991 ! gonad relationship: part_of UBERON:0000990 ! reproductive system [Term] id: UBERON:0002538 name: hatching gland alt_id: UBERON:MIAA_0000180-XAO_0000034-ZFA_0000026 def: "A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. Kimmel et al, 1995." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "frontal gland" RELATED [] synonym: "hgg" RELATED [] xref: BTO:0000558 xref: EFO:0000863 xref: HOG:0000078 xref: MAT:0000180 xref: MIAA:0000180 xref: TAO:0000026 xref: XAO:0000034 xref: ZFA:0000026 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:0002539 name: pharyngeal arch alt_id: UBERON:MIAA_0000242-XAO_0000096-ZFA_0001306 def: "One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo." [NLM:branchial+arch, Wikipedia:Pharyngeal_arch] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "pharyngeal arches" RELATED [] synonym: "visceral arch" RELATED [] xref: EFO:0000959 xref: HOG:0000155 xref: MAT:0000242 xref: MIAA:0000242 xref: ncithesaurus:Pharyngeal_Arch xref: TAO:0001306 xref: XAO:0000096 xref: ZFA:0001306 is_a: UBERON:0000481 ! multi-tissue structure [Term] id: UBERON:0002540 name: lateral line system alt_id: UBERON:MIAA_0000249-XAO_0000095-ZFA_0000034 def: "a line of neuroblasts along the sides of fish and amphibia that detect vibrations and pressure changes // Surface structure that has as it parts the sense organs that detect vibrations carried through water, develops during late tailbud stage, and persists in the adult bearing elaborate dorsal and ventral components. // A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ISBN:0471209627, ISBN:0815318960, Wikipedia:Lateral_line_system, ZFIN:curator] comment: TODO - DV with CARO\nThis class was created automatically from a combination of ontologies subset: uberon_slim synonym: "lateral line stitches" RELATED [] synonym: "lateral-line organs" RELATED [] synonym: "ll" RELATED [] xref: AAO:0000269 xref: EFO:0000941 xref: HOG:0001243 xref: MAT:0000249 xref: MIAA:0000249 xref: TAO:0000034 xref: XAO:0000095 xref: ZFA:0000034 is_a: UBERON:0001032 ! sense organ system is_a: UBERON:0003102 ! surface structure [Term] id: UBERON:0002541 name: germ ring alt_id: UBERON:MIAA_0000255-ZFA_0000111 comment: This class was created automatically from a combination of ontologies xref: AAO:0000211 xref: MAT:0000255 xref: MIAA:0000255 xref: TAO:0000111 xref: ZFA:0000111 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0002542 name: scale alt_id: UBERON:MIAA_0000257-ZFA_0000277 def: "A small rigid plate that grows out of an animal's skin to provide protection. In lepidopteran (butterfly and moth) species, scales are plates on the surface of the insect wing, and provide coloration. Scales are quite common and have evolved multiple times with varying structure and function." [Wikipedia:Scale_(zoology)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "scales" RELATED [] xref: EFO:0000960 xref: HAO:0000907 xref: MAT:0000257 xref: MIAA:0000257 xref: ncithesaurus:Scale xref: OpenCyc:Mx4rvVi9M5wpEbGdrcN5Y29ycA xref: TAO:0000277 xref: ZFA:0000277 is_a: UBERON:0000021 ! cutaneous appendage relationship: part_of UBERON:0002067 ! dermis [Term] id: UBERON:0002543 name: median fin skeleton alt_id: UBERON:MIAA_0000277-ZFA_0001123 comment: This class was created automatically from a combination of ontologies synonym: "axial fin skeleton" EXACT [] synonym: "unpaired fin skeleton" RELATED [] xref: EFO:0000950 xref: MAT:0000277 xref: MIAA:0000277 xref: TAO:0001123 xref: ZFA:0001123 is_a: UBERON:0002090 ! axial skeleton [Term] id: UBERON:0002544 name: digit alt_id: UBERON:MIAA_0000285-XAO_0003035-XAO_0003036 def: "." [Wikipedia:Digit_(anatomy)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EFO:0000881 xref: FMA:85518 xref: galen:Digit xref: HOG:0000944 xref: MA:0000690 xref: MAT:0000285 xref: MIAA:0000285 xref: ncithesaurus:Digit is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0002545 name: body ganglion alt_id: UBERON:MIAA_0000344-WBbt_0005332 comment: This class was created automatically from a combination of ontologies synonym: "trunk ganglion" RELATED [] xref: EFO:0000901 xref: MAT:0000344 xref: MIAA:0000344 xref: WBbt:0005332 is_a: UBERON:0000045 ! ganglion [Term] id: UBERON:0002546 name: cranial placode alt_id: UBERON:MIAA_0000369-XAO_0000305 comment: This class was created automatically from a combination of ontologies synonym: "cranial placodes" RELATED [] synonym: "neurogenic placode" RELATED [] xref: MAT:0000369 xref: MIAA:0000369 xref: XAO:0000305 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000924 ! ectoderm [Term] id: UBERON:0002547 name: tadpole alt_id: UBERON:MIAA_0000370-MIAA_0000400-XAO_1000008 def: "wholly aquatic larval stage in the life cycle of an amphibian, particularly of a frog or toad[WP]. XAO: The stages from feeding to the end of metamorphosis. Encompasses Weisz's first-form tadpole (equivalent to NF stages 45 to 49), second-form tadpole (NF 49 to 56) and third-form tadpole (NF 56 to 60-plus) stages." [ISBN:0471209627, ISSN:0003-276X, Wikipedia:Tadpole] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "tadpole stage" RELATED [] xref: BTO:0001347 xref: MAT:0000370 xref: MIAA:0000370 xref: XAO:1000008 is_a: UBERON:0002548 ! larva [Term] id: UBERON:0002548 name: larva alt_id: UBERON:MIAA_0000400-FBbt_00001727 def: "a distinct juvenile form many animals undergo before metamorphosis into adults. Animals with indirect development such as insects, amphibians, or cnidarians typically have a larval phase of their life cycle." [Wikipedia:Larva] comment: This class was created automatically from a combination of ontologies. TODO: discriminate between stages and organisms subset: uberon_slim synonym: "ammocoete" NARROW [Wikipedia:Larva] synonym: "bipinnaria" NARROW [Wikipedia:Larva] synonym: "caterpillar" NARROW [Wikipedia:Larva] synonym: "glochidium" NARROW [Wikipedia:Larva] synonym: "grub" NARROW [Wikipedia:Larva] synonym: "leptocephalus" NARROW [Wikipedia:Larva] synonym: "maggot" NARROW [Wikipedia:Larva] synonym: "naiad" NARROW [Wikipedia:Larva] synonym: "naupilus" NARROW [Wikipedia:Larva] synonym: "nymph" NARROW [Wikipedia:Larva] synonym: "planula" NARROW [Wikipedia:Larva] synonym: "tadpole" NARROW [Wikipedia:Larva] synonym: "trochophore" NARROW [Wikipedia:Larva] synonym: "veliger" NARROW [Wikipedia:Larva] synonym: "wriggler" NARROW [Wikipedia:Larva] synonym: "zoea" NARROW [Wikipedia:Larva] xref: BTO:0000707 xref: FBbt:00001727 xref: HAO:0000459 xref: MIAA:0000400 is_a: UBERON:0000061 ! anatomical structure intersection_of: UBERON:0000061 ! anatomical structure intersection_of: existence_starts_and_ends_during UBERON:0000069 ! larval stage relationship: existence_starts_and_ends_during UBERON:0000069 ! larval stage [Term] id: UBERON:0002549 name: ventral trigeminal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1001-FMA_72506 def: "." [Wikipedia:Ventral_trigeminal_tract] subset: uberon_slim synonym: "anterior trigeminothalamic tract" EXACT [FMA:72506] synonym: "trigeminal lemniscus-2" EXACT [FMA:72506] synonym: "ventral crossed tract" EXACT [FMA:72506] synonym: "ventral secondary ascending tract of V" EXACT [FMA:72506] synonym: "ventral secondary ascending tract of v" EXACT [] synonym: "ventral trigeminal pathway" EXACT [FMA:72506] synonym: "ventral trigeminothalamic tract" EXACT [FMA:72506] xref: FMA:72506 xref: NIF_GrossAnatomy:birnlex_1001 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002550 name: anterior hypothalamic region alt_id: UBERON:NIF_GrossAnatomy_birnlex_1005-FMA_62027 synonym: "chiasmal zone" EXACT [FMA:62027] xref: FMA:62027 xref: NIF_GrossAnatomy:birnlex_1005 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002551 name: interstitial nucleus of cajal alt_id: UBERON:NIF_GrossAnatomy_birnlex_1008-FMA_72432 synonym: "interstitial nucleus" EXACT [FMA:72432] synonym: "interstitial nucleus of Cajal" EXACT [FMA:72432] synonym: "interstitial nucleus of medial longitudinal fasciculus (Crosby)" EXACT [FMA:72432] synonym: "interstitial nucleus of medial longitudinal fasciculus (crosby)" EXACT [] xref: FMA:72432 xref: NIF_GrossAnatomy:birnlex_1008 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002552 name: vestibulocerebellar tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1009-FMA_72508 def: "." [Wikipedia:Vestibulocerebellar_tract] subset: uberon_slim synonym: "vestibulocerebellar fibers" EXACT [FMA:72508] xref: FMA:72508 xref: NIF_GrossAnatomy:birnlex_1009 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002553 name: anatomical cavity alt_id: UBERON:NIF_GrossAnatomy_birnlex_1011-FMA_67552 def: "Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina.\"" [FMA:67552] synonym: "cavity" EXACT [] xref: FMA:67552 xref: NIF_GrossAnatomy:birnlex_1011 is_a: UBERON:0000464 ! anatomical space relationship: location_of UBERON:0000463 ! portion of organism substance [Term] id: UBERON:0002554 name: regional part of superior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1014-FMA_85592 synonym: "segment of superior colliculus" EXACT [NIF_GrossAnatomy:birnlex_1014] synonym: "superior colliculus segment" EXACT [FMA:85592] xref: FMA:85592 xref: NIF_GrossAnatomy:birnlex_1014 is_a: UBERON:0002966 ! regional part of midbrain tectum intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001945 ! superior colliculus [Term] id: UBERON:0002555 name: intermediate hypothalamic region alt_id: UBERON:NIF_GrossAnatomy_birnlex_1015-FMA_62028 synonym: "intermediate hypothalamic area" EXACT [FMA:62028] xref: FMA:62028 xref: NIF_GrossAnatomy:birnlex_1015 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus relationship: has_part UBERON:0001932 ! arcuate nucleus of hypothalamus relationship: has_part UBERON:0001933 ! retrochiasmatic area relationship: has_part UBERON:0001934 ! dorsomedial nucleus of hypothalamus relationship: has_part UBERON:0001935 ! ventromedial nucleus of hypothalamus relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002556 name: corticotectal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1016-FMA_72419 synonym: "corticotectal fibers" EXACT [FMA:72419] synonym: "corticotectal fibres" EXACT [FMA:72419] xref: FMA:72419 xref: NIF_GrossAnatomy:birnlex_1016 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002557 name: linear nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1018-FMA_72436 xref: FMA:72436 xref: NIF_GrossAnatomy:birnlex_1018 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002558 name: organ cavity alt_id: UBERON:NIF_GrossAnatomy_birnlex_1019-FMA_12237 synonym: "cavity of organ" EXACT [FMA:12237] xref: FMA:12237 xref: NIF_GrossAnatomy:birnlex_1019 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0002559 name: medullary reticular formation alt_id: UBERON:NIF_GrossAnatomy_birnlex_1020-FMA_72241 synonym: "bulbar reticular formation" EXACT [FMA:72241] synonym: "reticular formation of medulla" EXACT [FMA:72241] xref: FMA:72241 xref: NIF_GrossAnatomy:birnlex_1020 is_a: UBERON:0002275 ! reticular formation intersection_of: UBERON:0002275 ! reticular formation intersection_of: part_of UBERON:0000958 ! medulla [Term] id: UBERON:0002560 name: temporal operculum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1025-FMA_74891 synonym: "facies supratemporalis" EXACT [FMA:74891] xref: FMA:74891 xref: NIF_GrossAnatomy:birnlex_1025 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002561 name: neuraxis cavity alt_id: UBERON:NIF_GrossAnatomy_birnlex_1029-FMA_75007 synonym: "cavity of ventricular system of neuraxis" EXACT [FMA:75007] synonym: "neuraxis cavity" EXACT [FMA:75007] xref: FMA:75007 xref: NIF_GrossAnatomy:birnlex_1029 is_a: UBERON:0002558 ! organ cavity [Term] id: UBERON:0002562 name: superior frontal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1030-FMA_83755 def: "." [Wikipedia:Superior_frontal_sulcus] subset: uberon_slim synonym: "sulcus f1" EXACT [FMA:83755] synonym: "superior frontal fissure" EXACT [FMA:83755] xref: FMA:83755 xref: ncithesaurus:Superior_Frontal_Sulcus xref: NIF_GrossAnatomy:birnlex_1030 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002563 name: central nucleus of inferior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1035-FMA_72413 synonym: "chief nucleus of inferior colliculus" EXACT [FMA:72413] synonym: "inferior colliculus, central nucleus" EXACT [FMA:72413] synonym: "nucleus of inferior colliculus (Crosby)" EXACT [FMA:72413] synonym: "nucleus of inferior colliculus (crosby)" EXACT [] xref: FMA:72413 xref: NIF_GrossAnatomy:birnlex_1035 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002917 ! implied link automatically realized ! regional part of inferior colliculus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0002564 name: lateral orbital gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1036-FMA_62418 xref: FMA:62418 xref: NIF_GrossAnatomy:birnlex_1036 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0002565 name: olivary pretectal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1037-FMA_72405 def: "." [Wikipedia:Olivary_pretectal_nucleus] subset: uberon_slim synonym: "anterior pretectal nucleus" EXACT [FMA:72405] synonym: "olivary nucleus of superior colliculus" EXACT [FMA:72405] synonym: "pretectal olivary nucleus" EXACT [FMA:72405] xref: FMA:72405 xref: NIF_GrossAnatomy:birnlex_1037 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0002566 name: superior precentral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1038-FMA_83763 synonym: "precentral dimple" EXACT [FMA:83763] synonym: "superior part of precentral fissure" EXACT [FMA:83763] xref: FMA:83763 xref: NIF_GrossAnatomy:birnlex_1038 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002567 name: basal part of pons alt_id: UBERON:NIF_GrossAnatomy_birnlex_1043-FMA_72244 synonym: "basal portion of pons" EXACT [FMA:72244] synonym: "base of pons" EXACT [FMA:72244] synonym: "basilar part of pons" EXACT [FMA:72244] synonym: "pons proper" EXACT [FMA:72244] synonym: "ventral portion of pons" EXACT [FMA:72244] xref: FMA:72244 xref: NIF_GrossAnatomy:birnlex_1043 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon relationship: has_part UBERON:0002152 ! middle cerebellar peduncle relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002568 name: amiculum of dentate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1044-FMA_72546 synonym: "dentate nuclear amiculum" EXACT [FMA:72546] xref: FMA:72546 xref: NIF_GrossAnatomy:birnlex_1044 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002317 ! implied link automatically realized ! white matter of cerebellum relationship: part_of UBERON:0002132 ! dentate nucleus [Term] id: UBERON:0002569 name: transverse temporal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1045-FMA_83782 xref: FMA:83782 xref: NIF_GrossAnatomy:birnlex_1045 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002570 name: medial orbital gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1046-FMA_62419 xref: FMA:62419 xref: NIF_GrossAnatomy:birnlex_1046 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0002571 name: external nucleus of inferior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1047-FMA_72412 xref: FMA:72412 xref: NIF_GrossAnatomy:birnlex_1047 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002917 ! implied link automatically realized ! regional part of inferior colliculus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0002572 name: principal pretectal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1048-FMA_72402 xref: FMA:72402 xref: NIF_GrossAnatomy:birnlex_1048 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0002573 name: pontine reticular formation alt_id: UBERON:NIF_GrossAnatomy_birnlex_1050-FMA_68876 def: "." [Wikipedia:Pontine_reticular_formation] subset: uberon_slim synonym: "reticular formation of pons" EXACT [FMA:68876] xref: FMA:68876 xref: NIF_GrossAnatomy:birnlex_1050 is_a: UBERON:0002275 ! reticular formation is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon intersection_of: UBERON:0002275 ! reticular formation intersection_of: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002574 name: regional part of inferior olivary complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1052-FMA_71259 synonym: "inferior olivary complex segment" EXACT [FMA:71259] synonym: "segment of inferior olivary complex" EXACT [NIF_GrossAnatomy:birnlex_1052] xref: FMA:71259 xref: NIF_GrossAnatomy:birnlex_1052 is_a: UBERON:0002678 ! regional part of medulla oblongata intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002127 ! inferior olivary complex [Term] id: UBERON:0002575 name: posterior orbital gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1054-FMA_80184 xref: FMA:80184 xref: NIF_GrossAnatomy:birnlex_1054 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0002576 name: temporal pole alt_id: UBERON:NIF_GrossAnatomy_birnlex_1055-FMA_74890 def: "." [Wikipedia:Temporal_pole] subset: uberon_slim xref: FMA:74890 xref: NIF_GrossAnatomy:birnlex_1055 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002577 name: pericentral nucleus of inferior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1056-FMA_72411 synonym: "cortex of inferior colliculus" EXACT [FMA:72411] xref: FMA:72411 xref: NIF_GrossAnatomy:birnlex_1056 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002917 ! implied link automatically realized ! regional part of inferior colliculus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0002578 name: sublentiform nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1057-FMA_72404 xref: FMA:72404 xref: NIF_GrossAnatomy:birnlex_1057 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0002579 name: regional part of medullary reticular formation alt_id: UBERON:NIF_GrossAnatomy_birnlex_1060-FMA_73730 synonym: "medullary reticular formation segment" EXACT [FMA:73730] synonym: "segment of medullary reticular formation" EXACT [NIF_GrossAnatomy:birnlex_1060] xref: FMA:73730 xref: NIF_GrossAnatomy:birnlex_1060 is_a: UBERON:0002678 ! regional part of medulla oblongata intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002559 ! medullary reticular formation [Term] id: UBERON:0002580 name: brachium of superior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1065-FMA_72417 def: "." [Wikipedia:Brachium_of_superior_colliculus] subset: uberon_slim synonym: "superior brachium" EXACT [FMA:72417] synonym: "superior collicular brachium" EXACT [FMA:72417] synonym: "superior colliculus brachium" EXACT [FMA:72417] synonym: "superior quadrigeminal brachium" EXACT [FMA:72417] xref: FMA:72417 xref: NIF_GrossAnatomy:birnlex_1065 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002554 ! implied link automatically realized ! regional part of superior colliculus is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001945 ! superior colliculus [Term] id: UBERON:0002581 name: postcentral gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1070-FMA_61896 def: "." [Wikipedia:Postcentral_gyrus] subset: uberon_slim synonym: "postcentral convolution" EXACT [FMA:61896] synonym: "posterior central gyrus" EXACT [FMA:61896] synonym: "postrolandic gyrus" EXACT [FMA:61896] xref: EFO:0001383 xref: FMA:61896 xref: ncithesaurus:Postcentral_Gyrus xref: NIF_GrossAnatomy:birnlex_1070 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0002582 name: anterior calcarine sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1072-FMA_83750 synonym: "anterior calcarine fissure" EXACT [FMA:83750] xref: FMA:83750 xref: NIF_GrossAnatomy:birnlex_1072 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002583 name: commissure of superior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1073-FMA_72418 synonym: "commissure of superior colliculi" EXACT [FMA:72418] synonym: "superior colliculus commissure" EXACT [FMA:72418] xref: FMA:72418 xref: NIF_GrossAnatomy:birnlex_1073 is_a: UBERON:0001020 ! commissure is_a: UBERON:0002554 ! implied link automatically realized ! regional part of superior colliculus intersection_of: UBERON:0001020 ! commissure intersection_of: part_of UBERON:0001945 ! superior colliculus relationship: part_of UBERON:0001945 ! superior colliculus [Term] id: UBERON:0002584 name: regional part of vestibular nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1080-FMA_71267 synonym: "segment of vestibular nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1080] synonym: "vestibular nuclear complex segment" EXACT [FMA:71267] xref: FMA:71267 xref: NIF_GrossAnatomy:birnlex_1080 is_a: UBERON:0002678 ! regional part of medulla oblongata intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002673 ! vestibular nuclear complex [Term] id: UBERON:0002585 name: central tegmental tract of midbrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_1081-FMA_72456 xref: FMA:72456 xref: NIF_GrossAnatomy:birnlex_1081 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002586 name: calcarine sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1086-FMA_83749 def: "." [Wikipedia:Calcarine_sulcus] subset: uberon_slim synonym: "calcarine fissure" EXACT [FMA:83749] xref: FMA:83749 xref: ncithesaurus:Calcarine_Sulcus xref: NIF_GrossAnatomy:birnlex_1086 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002587 name: nucleus subceruleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1088-FMA_72479 synonym: "subcaerulean nucleus" EXACT [FMA:72479] xref: FMA:72479 xref: NIF_GrossAnatomy:birnlex_1088 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002588 name: decussation of superior cerebellar peduncle alt_id: UBERON:NIF_GrossAnatomy_birnlex_1089-FMA_72455 def: "." [Wikipedia:Decussation_of_superior_cerebellar_peduncle] subset: uberon_slim synonym: "decussation of brachium conjunctivum" EXACT [FMA:72455] synonym: "decussation of superior cerebellar peduncles" EXACT [FMA:72455] synonym: "superior cerebellar peduncle decussation" EXACT [FMA:72455] synonym: "wernekink's decussation" EXACT [FMA:72455] xref: FMA:72455 xref: NIF_GrossAnatomy:birnlex_1089 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002589 name: lateral corticospinal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1095-FMA_72635 def: "." [Wikipedia:Lateral_corticospinal_tract] subset: uberon_slim synonym: "lateral pyramidal tract" EXACT [FMA:72635] xref: FMA:72635 xref: NIF_GrossAnatomy:birnlex_1095 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002590 name: prepyriform area alt_id: UBERON:NIF_GrossAnatomy_birnlex_1097-FMA_62484 synonym: "lateral olfactory gyrus" EXACT [FMA:62484] synonym: "piriform cortex (Price)" EXACT [FMA:62484] synonym: "piriform cortex (price)" EXACT [] synonym: "prepiriform cortex" EXACT [FMA:62484] synonym: "prepyriform cortex" EXACT [FMA:62484] xref: FMA:62484 xref: NIF_GrossAnatomy:birnlex_1097 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002591 name: oral part of spinal trigeminal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1100-FMA_235322 xref: FMA:235322 xref: NIF_GrossAnatomy:birnlex_1100 is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve [Term] id: UBERON:0002592 name: juxtarestiform body alt_id: UBERON:NIF_GrossAnatomy_birnlex_1101-FMA_72613 def: "." [Wikipedia:Juxtarestiform_body] subset: uberon_slim xref: FMA:72613 xref: NIF_GrossAnatomy:birnlex_1101 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002593 name: orbital operculum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1102-FMA_74887 xref: FMA:74887 xref: NIF_GrossAnatomy:birnlex_1102 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002594 name: dentatothalamic tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1104-FMA_72462 def: "." [Wikipedia:Dentatothalamic_tract] subset: uberon_slim synonym: "dentatothalamic fibers" EXACT [FMA:72462] xref: FMA:72462 xref: NIF_GrossAnatomy:birnlex_1104 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002595 name: orbital sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1112-FMA_83770 synonym: "orbital sulci" EXACT [FMA:83770] xref: FMA:83770 xref: ncithesaurus:Orbital_Sulcus xref: NIF_GrossAnatomy:birnlex_1112 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002596 name: ventral posterior nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1116-FMA_62187 def: "." [Wikipedia:Ventral_posterior_nucleus] subset: uberon_slim synonym: "ventral posterior thalamic nucleus" EXACT [FMA:62187] synonym: "ventrobasal complex" EXACT [FMA:62187] synonym: "ventrobasal nucleus" EXACT [FMA:62187] xref: FMA:62187 xref: NIF_GrossAnatomy:birnlex_1116 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002597 name: principal sensory nucleus of trigeminal nerve alt_id: UBERON:NIF_GrossAnatomy_birnlex_1120-FMA_54533 def: "." [Wikipedia:Chief_sensory_nucleus] subset: uberon_slim synonym: "chief sensory nucleus" EXACT [FMA:54533] synonym: "main sensory nucleus" EXACT [FMA:54533] synonym: "main sensory nucleus of cranial nerve V" EXACT [FMA:54533] synonym: "main sensory nucleus of cranial nerve v" EXACT [] synonym: "pontine nucleus" EXACT [GO:0021740] synonym: "principal sensory trigeminal nucleus" EXACT [FMA:54533] synonym: "principal trigeminal nucleus" EXACT [FMA:54533] synonym: "superior trigeminal nucleus" EXACT [FMA:54533] synonym: "superior trigeminal sensory nucleus" EXACT [FMA:54533] synonym: "trigeminal nerve superior sensory nucleus" EXACT [FMA:54533] xref: BTO:0003396 xref: FMA:54533 xref: NIF_GrossAnatomy:birnlex_1120 is_a: UBERON:0000126 ! cranial nerve nucleus is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001645 ! trigeminal nerve [Term] id: UBERON:0002598 name: paracentral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1121-FMA_83762 xref: FMA:83762 xref: NIF_GrossAnatomy:birnlex_1121 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002599 name: medial olfactory gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1127-FMA_74509 xref: FMA:74509 xref: NIF_GrossAnatomy:birnlex_1127 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0002600 name: limbic lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1128-FMA_72719 def: "." [Wikipedia:Limbic_lobe] subset: uberon_slim synonym: "fornicate gyrus" EXACT [FMA:72719] synonym: "grande lobe limbique of Broca" EXACT [FMA:72719] synonym: "grande lobe limbique of broca" EXACT [] synonym: "limbic lobe (Carpenter)" EXACT [FMA:72719] synonym: "limbic lobe (carpenter)" EXACT [] xref: FMA:72719 xref: NIF_GrossAnatomy:birnlex_1128 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0002601 name: fasciolar gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1129-FMA_61921 synonym: "retrosplenial gyrus of hippocampus" EXACT [FMA:61921] xref: BTO:0002497 xref: FMA:61921 xref: NIF_GrossAnatomy:birnlex_1129 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0002602 name: emboliform nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1135-FMA_72538 def: "." [Wikipedia:Emboliform_nucleus] subset: uberon_slim synonym: "anterior interposed nucleus" EXACT [FMA:72538] synonym: "anterior interpositus nucleus" EXACT [FMA:72538] xref: FMA:72538 xref: NIF_GrossAnatomy:birnlex_1135 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002603 name: paraterminal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1138-FMA_61919 def: "." [Wikipedia:Paraterminal_gyrus] subset: uberon_slim synonym: "precommissural hippocampus" EXACT [FMA:61919] synonym: "subcallosal gyrus" EXACT [FMA:61919] xref: FMA:61919 xref: NIF_GrossAnatomy:birnlex_1138 is_a: UBERON:0002665 ! supracallosal gyrus [Term] id: UBERON:0002604 name: ventral nucleus of lateral lemniscus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1140-FMA_72484 def: "." [Wikipedia:Ventral_nucleus_of_the_lateral_lemniscus] subset: uberon_slim synonym: "anterior nucleus of lateral lemniscus" EXACT [FMA:72484] synonym: "ventral nucleus of the lateral lemniscus" EXACT [FMA:72484] xref: FMA:72484 xref: NIF_GrossAnatomy:birnlex_1140 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002605 name: precentral operculum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1141-FMA_74888 xref: FMA:74888 xref: NIF_GrossAnatomy:birnlex_1141 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002606 name: neuropil alt_id: UBERON:NIF_GrossAnatomy_birnlex_1142-FMA_261269 def: "A dense intricate feltwork of interwoven fine glial processes, fibrils, synaptic terminals, axons, and dendrites interspersed among the nerve cells in the gray matter of the central nervous system (MSH). A region between neuronal cell bodies in the gray matter of the brain and spinal cord (i.e. the central nervous system). It consists of a dense tangle of axon terminals, dendrites and glial cell processes. It is where synaptic connections are formed between branches of axons and dendrites." [Wikipedia:Neuropil] subset: uberon_slim xref: FMA:261269 xref: ncithesaurus:Neuropil xref: NIF_GrossAnatomy:birnlex_1142 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002607 name: superior rostral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1143-FMA_83766 xref: FMA:83766 xref: NIF_GrossAnatomy:birnlex_1143 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002608 name: caudal part of ventral lateral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1144-FMA_62194 synonym: "dorsal part of ventral lateral posterior nucleus (Jones)" EXACT [FMA:62194] synonym: "dorsal part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "ventral lateral nucleus, caudal part" EXACT [FMA:62194] synonym: "ventral lateral thalamic nucleus, caudal part" EXACT [FMA:62194] xref: FMA:62194 xref: NIF_GrossAnatomy:birnlex_1144 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001925 ! ventral lateral nucleus [Term] id: UBERON:0002609 name: spinothalamic tract of midbrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_1150-FMA_72463 xref: FMA:72463 xref: NIF_GrossAnatomy:birnlex_1150 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002610 name: cochlear nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1151-FMA_72240 def: "." [Wikipedia:Cochlear_nuclei] subset: uberon_slim synonym: "cochlear nuclei" EXACT [FMA:72240] xref: FMA:72240 xref: ncithesaurus:Cochlear_Nuclei xref: NIF_GrossAnatomy:birnlex_1151 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002611 name: node of ranvier alt_id: UBERON:NIF_GrossAnatomy_birnlex_1152-FMA_67368 def: "." [Wikipedia:Node_of_ranvier] subset: uberon_slim synonym: "ranvier node" EXACT [FMA:67368] synonym: "ranvier's node" EXACT [FMA:67368] xref: FMA:67368 xref: GO:0033268 xref: ncithesaurus:Node_of_Ranvier xref: NIF_GrossAnatomy:birnlex_1152 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0002612 name: transverse orbital sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1155-FMA_83771 xref: FMA:83771 xref: NIF_GrossAnatomy:birnlex_1155 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002613 name: globose nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1158-FMA_72536 def: "." [Wikipedia:Globose_nucleus] subset: uberon_slim synonym: "posterior interposed nucleus" EXACT [FMA:72536] synonym: "posterior interpositus nucleus" EXACT [FMA:72536] xref: FMA:72536 xref: NIF_GrossAnatomy:birnlex_1158 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002614 name: medial part of ventral lateral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1159-FMA_62195 synonym: "ventral lateral nucleus, medial part" EXACT [FMA:62195] synonym: "ventral medial nucleus" EXACT [FMA:62195] xref: FMA:62195 xref: NIF_GrossAnatomy:birnlex_1159 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001925 ! ventral lateral nucleus [Term] id: UBERON:0002615 name: ventral tegmental decussation alt_id: UBERON:NIF_GrossAnatomy_birnlex_1163-FMA_72452 synonym: "anterior tegmental decussation" EXACT [FMA:72452] synonym: "decussation of Forel" EXACT [FMA:72452] synonym: "decussation of forel" EXACT [] synonym: "ventral tegmental decussation of Forel" EXACT [FMA:72452] synonym: "ventral tegmental decussation of forel" EXACT [] xref: FMA:72452 xref: NIF_GrossAnatomy:birnlex_1163 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002616 name: regional part of brain alt_id: UBERON:NIF_GrossAnatomy_birnlex_1167-FMA_55676 synonym: "neuraxis segment" EXACT [FMA:55676] synonym: "segment of brain" EXACT [NIF_GrossAnatomy:birnlex_1167] xref: FMA:55676 xref: NIF_GrossAnatomy:birnlex_1167 is_a: UBERON:0000073 ! regional part of nervous system intersection_of: UBERON:0000061 ! anatomical structure intersection_of: part_of UBERON:0000955 ! brain [Term] id: UBERON:0002617 name: pars postrema of ventral lateral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1170-FMA_62196 synonym: "posterodorsal part of ventral lateral posterior nucleus (Jones)" EXACT [FMA:62196] synonym: "posterodorsal part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "ventral lateral nucleus (pars postrema)" EXACT [FMA:62196] xref: FMA:62196 xref: NIF_GrossAnatomy:birnlex_1170 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001925 ! ventral lateral nucleus [Term] id: UBERON:0002618 name: trochlear nerve fibers alt_id: UBERON:NIF_GrossAnatomy_birnlex_1172-FMA_71116 synonym: "central part of trochlear nerve" EXACT [FMA:71116] synonym: "trochlear nerve fibers" EXACT [FMA:71116] synonym: "trochlear nerve root" EXACT [FMA:71116] xref: FMA:71116 xref: NIF_GrossAnatomy:birnlex_1172 is_a: UBERON:0002211 ! segment of nerve [Term] id: UBERON:0002619 name: regional part of cerebral cortex alt_id: UBERON:0003208 alt_id: UBERON:NIF_GrossAnatomy_birnlex_1173-FMA_68603 synonym: "cerebral cortex part" EXACT [] synonym: "cerebral cortical segment" EXACT [FMA:68603] synonym: "regional organ part of cerebral cortex" EXACT [FMA:68603] synonym: "segment of cerebral cortex" EXACT [NIF_GrossAnatomy:birnlex_1173] xref: FMA:242193 xref: FMA:68603 xref: NIF_GrossAnatomy:birnlex_1173 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0000956 ! cerebral cortex [Term] id: UBERON:0002620 name: tuber cinereum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1189-FMA_62327 def: "." [Wikipedia:Tuber_cinereum] subset: uberon_slim xref: FMA:62327 xref: ncithesaurus:Tuber_Cinereum xref: NIF_GrossAnatomy:birnlex_1189 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002621 name: regional part of cochlear nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1195-FMA_83952 synonym: "cochlear nuclear complex segment" EXACT [FMA:83952] synonym: "segment of cochlear nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1195] xref: FMA:83952 xref: NIF_GrossAnatomy:birnlex_1195 is_a: UBERON:0002678 ! regional part of medulla oblongata intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002610 ! cochlear nuclear complex [Term] id: UBERON:0002622 name: preoptic periventricular nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1201-FMA_62324 synonym: "periventricular preoptic nucleus" EXACT [FMA:62324] synonym: "preoptic periventricular hypothalamic nucleus" EXACT [FMA:62324] xref: FMA:62324 xref: NIF_GrossAnatomy:birnlex_1201 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0001928 ! preoptic area [Term] id: UBERON:0002623 name: cerebral peduncle alt_id: UBERON:NIF_GrossAnatomy_birnlex_1202-FMA_62394 def: "." [Wikipedia:Cerebral_peduncle] subset: uberon_slim synonym: "cerebral peduncle" EXACT [FMA:62394] xref: EFO:0001987 xref: FMA:62394 xref: ncithesaurus:Cerebral_Peduncle xref: NIF_GrossAnatomy:birnlex_1202 is_a: UBERON:0002316 ! white matter of neuraxis relationship: has_part UBERON:0001943 ! midbrain tegmentum relationship: has_part UBERON:0002038 ! substantia nigra [Term] id: UBERON:0002624 name: orbital part of inferior frontal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1207-FMA_61982 synonym: "inferior frontal gyrus, orbital part" EXACT [FMA:61982] xref: FMA:61982 xref: NIF_GrossAnatomy:birnlex_1207 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002625 name: median preoptic nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1208-FMA_62323 def: "." [Wikipedia:Median_preoptic_nucleus] subset: uberon_slim xref: FMA:62323 xref: NIF_GrossAnatomy:birnlex_1208 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0001928 ! preoptic area [Term] id: UBERON:0002626 name: head of caudate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1212-FMA_61852 synonym: "caput (caudatus)" EXACT [FMA:61852] synonym: "caudate nuclear head" EXACT [FMA:61852] xref: FMA:61852 xref: NIF_GrossAnatomy:birnlex_1212 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0002627 name: capsule of medial geniculate body alt_id: UBERON:NIF_GrossAnatomy_birnlex_1214-FMA_62049 synonym: "medial geniculate body capsule" EXACT [FMA:62049] xref: FMA:62049 xref: NIF_GrossAnatomy:birnlex_1214 is_a: UBERON:0002316 ! white matter of neuraxis relationship: part_of UBERON:0001927 ! medial geniculate body [Term] id: UBERON:0002628 name: tail of caudate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1215-FMA_61854 synonym: "caudate nuclear tail" EXACT [FMA:61854] xref: FMA:61854 xref: NIF_GrossAnatomy:birnlex_1215 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0002629 name: triangular part of inferior frontal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1216-FMA_61980 xref: FMA:61980 xref: NIF_GrossAnatomy:birnlex_1216 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002630 name: body of caudate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1217-FMA_61853 synonym: "caudate nuclear body" EXACT [FMA:61853] synonym: "corpus (caudatus)" EXACT [FMA:61853] xref: FMA:61853 xref: NIF_GrossAnatomy:birnlex_1217 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001873 ! caudate nucleus [Term] id: UBERON:0002631 name: cerebral crus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1218-FMA_72464 def: "." [Wikipedia:Cerebral_crus] subset: uberon_slim synonym: "cerebral peduncle (clinical definition)" EXACT [FMA:72464] xref: FMA:72464 xref: NIF_GrossAnatomy:birnlex_1218 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002632 name: medial part of medial mammillary nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1220-FMA_62345 synonym: "medial mammillary nucleus (Carpenter)" EXACT [FMA:62345] synonym: "medial mammillary nucleus (carpenter)" EXACT [] synonym: "medial mammillary nucleus, medial part" EXACT [FMA:62345] synonym: "medial mammillary nucleus, median part" EXACT [FMA:62345] synonym: "medial subdivision of medial mammillary nucleus" EXACT [FMA:62345] xref: FMA:62345 xref: NIF_GrossAnatomy:birnlex_1220 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002633 name: motor nucleus of trigeminal nerve alt_id: UBERON:NIF_GrossAnatomy_birnlex_1222-FMA_54562 synonym: "motor nucleus of cranial nerve V" EXACT [FMA:54562] synonym: "motor nucleus of cranial nerve v" EXACT [] synonym: "motor nucleus of trigeminal nerve" EXACT [FMA:54562] xref: FMA:54562 xref: NIF_GrossAnatomy:birnlex_1222 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002634 name: anterior nucleus of hypothalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1226-FMA_62319 def: "." [Wikipedia:Anterior_hypothalamic_nucleus] subset: uberon_slim synonym: "anterior hypothalamic area" EXACT [FMA:62319] synonym: "anterior hypothalamic nucleus" EXACT [FMA:62319] synonym: "fundamental gray substance" EXACT [FMA:62319] synonym: "parvocellular nucleus of hypothalamus" EXACT [FMA:62319] xref: BTO:0002450 xref: FMA:62319 xref: NIF_GrossAnatomy:birnlex_1226 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001928 ! preoptic area [Term] id: UBERON:0002635 name: regional part of midbrain tegmentum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1227-FMA_62399 synonym: "midbrain tegmentum segment" EXACT [FMA:62399] synonym: "segment of midbrain tegmentum" EXACT [NIF_GrossAnatomy:birnlex_1227] xref: FMA:62399 xref: NIF_GrossAnatomy:birnlex_1227 is_a: UBERON:0002950 ! regional part of midbrain [Term] id: UBERON:0002636 name: lateral pulvinar nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1228-FMA_62181 synonym: "lateral pulvinar nucleus of thalamus" EXACT [FMA:62181] xref: FMA:62181 xref: NIF_GrossAnatomy:birnlex_1228 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002637 name: ventral anterior nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1232-FMA_62184 def: "." [Wikipedia:Ventral_anterior_nucleus] subset: uberon_slim synonym: "ventral anterior nucleus of thalamus" EXACT [FMA:62184] synonym: "ventral anterior thalamic nucleus" EXACT [FMA:62184] xref: BTO:0002468 xref: FMA:62184 xref: NIF_GrossAnatomy:birnlex_1232 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002638 name: medial pulvinar nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1233-FMA_62182 xref: FMA:62182 xref: NIF_GrossAnatomy:birnlex_1233 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002639 name: midbrain reticular formation alt_id: UBERON:NIF_GrossAnatomy_birnlex_1235-FMA_62406 synonym: "reticular formation of midbrain" EXACT [FMA:62406] synonym: "tegmental reticular formation" EXACT [FMA:62406] xref: FMA:62406 xref: NIF_GrossAnatomy:birnlex_1235 is_a: UBERON:0002275 ! reticular formation is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain intersection_of: UBERON:0002275 ! reticular formation intersection_of: part_of UBERON:0001891 ! midbrain relationship: has_part UBERON:0002142 ! pedunculopontine tegmental nucleus relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002640 name: cuneocerebellar tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1238-FMA_72637 def: "." [Wikipedia:Cuneocerebellar_tract] subset: uberon_slim xref: FMA:72637 xref: NIF_GrossAnatomy:birnlex_1238 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002641 name: oral pulvinar nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1239-FMA_62180 synonym: "anterior pulvinar nucleus" EXACT [FMA:62180] synonym: "oral nuclear group of pulvinar" EXACT [FMA:62180] synonym: "oral part of pulvinar" EXACT [FMA:62180] synonym: "oral portion of pulvinar" EXACT [FMA:62180] xref: FMA:62180 xref: NIF_GrossAnatomy:birnlex_1239 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002642 name: cuneate fasciculus of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_1242-FMA_72623 xref: FMA:72623 xref: NIF_GrossAnatomy:birnlex_1242 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002643 name: decussation of medial lemniscus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1245-FMA_72622 def: "." [Wikipedia:Sensory_decussation] subset: uberon_slim synonym: "decussation of lemnisci" EXACT [FMA:72622] synonym: "decussation of lemniscus" EXACT [FMA:72622] synonym: "decussation of medial lemnisci" EXACT [FMA:72622] synonym: "medial lemniscus decussation" EXACT [FMA:72622] synonym: "medullary sensory decussation" EXACT [FMA:72622] synonym: "sensory decussation" EXACT [FMA:72622] xref: FMA:72622 xref: NIF_GrossAnatomy:birnlex_1245 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002644 name: intermediate orbital gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1247-FMA_80183 xref: FMA:80183 xref: NIF_GrossAnatomy:birnlex_1247 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0002645 name: densocellular part of medial dorsal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1255-FMA_62163 xref: FMA:62163 xref: NIF_GrossAnatomy:birnlex_1255 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002646 name: dorsal longitudinal fasciculus of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_1257-FMA_72617 xref: FMA:72617 xref: NIF_GrossAnatomy:birnlex_1257 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: part_of UBERON:0000958 ! medulla relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002647 name: magnocellular part of medial dorsal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1262-FMA_62161 synonym: "dorsomedial thalamic nucleus, magnocellular part" EXACT [FMA:62161] synonym: "magnocellular mediodorsal nucleus" EXACT [FMA:62161] synonym: "magnocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62161] synonym: "magnocellular part of dorsomedial nucleus" EXACT [FMA:62161] xref: FMA:62161 xref: NIF_GrossAnatomy:birnlex_1262 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002648 name: anterior median eminence alt_id: UBERON:NIF_GrossAnatomy_birnlex_1264-FMA_74870 xref: FMA:74870 xref: NIF_GrossAnatomy:birnlex_1264 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002649 name: dorsolateral fasciculus of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_1267-FMA_72616 def: "." [Wikipedia:Lissauer's_tract] subset: uberon_slim synonym: "dorsolateral tract" EXACT [FMA:72616] synonym: "lissauer's tract" EXACT [FMA:72616] synonym: "posterolateral fasciculus" EXACT [FMA:72616] synonym: "posterolateral tract" EXACT [FMA:72616] synonym: "tract of Lissauer" EXACT [FMA:72616] synonym: "tract of lissauer" EXACT [] synonym: "zone of Lissauer" EXACT [FMA:72616] synonym: "zone of lissauer" EXACT [] xref: FMA:72616 xref: ncithesaurus:Tract_of_Lissauer xref: NIF_GrossAnatomy:birnlex_1267 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002650 name: paralaminar part of medial dorsal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1276-FMA_62160 synonym: "dorsomedial thalamic nucleus, paralaminar part" EXACT [FMA:62160] synonym: "paralaminar part of dorsomedial nucleus" EXACT [FMA:62160] synonym: "paralaminar part of medial dorsal nucleus of thalamus" EXACT [FMA:62160] synonym: "pars paralaminaris of medial dorsal nucleus of thalamus" EXACT [FMA:62160] synonym: "ventral mediodorsal nucleus" EXACT [FMA:62160] xref: FMA:62160 xref: NIF_GrossAnatomy:birnlex_1276 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002651 name: anterior horn of lateral ventricle alt_id: UBERON:NIF_GrossAnatomy_birnlex_1279-FMA_74520 def: "." [Wikipedia:Anterior_horn_of_lateral_ventricle] subset: uberon_slim synonym: "anterior horn of lateral ventricle" EXACT [FMA:74520] xref: FMA:74520 xref: NIF_GrossAnatomy:birnlex_1279 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0002652 name: posterior median eminence alt_id: UBERON:NIF_GrossAnatomy_birnlex_1280-FMA_74875 xref: FMA:74875 xref: NIF_GrossAnatomy:birnlex_1280 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002653 name: gracile fasciculus of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_1282-FMA_72624 synonym: "column of Goll" EXACT [FMA:72624] synonym: "column of goll" EXACT [] synonym: "fasciculus of Goll" EXACT [FMA:72624] synonym: "fasciculus of goll" EXACT [] synonym: "goll's tract" EXACT [FMA:72624] synonym: "gracile fascicle of medulla" EXACT [FMA:72624] synonym: "medulla segment of fasciculus gracilis" EXACT [FMA:72624] synonym: "medulla segment of gracile fasciculus" EXACT [FMA:72624] synonym: "tract of Gall" EXACT [FMA:72624] synonym: "tract of gall" EXACT [] xref: FMA:72624 xref: NIF_GrossAnatomy:birnlex_1282 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002654 name: parvicellular part of medial dorsal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1283-FMA_62162 synonym: "dorsomedial thalamic nucleus, parvicellular part" EXACT [FMA:62162] synonym: "lateral mediodorsal nucleus" EXACT [FMA:62162] synonym: "lateral nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162] synonym: "parvicellular part of dorsomedial nucleus" EXACT [FMA:62162] synonym: "parvocellular nucleus of medial dorsal nucleus of thalamus" EXACT [FMA:62162] synonym: "principal division of ventral anterior nucleus of thalamus" EXACT [FMA:62162] xref: FMA:62162 xref: NIF_GrossAnatomy:birnlex_1283 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002655 name: body of lateral ventricle alt_id: UBERON:NIF_GrossAnatomy_birnlex_1287-FMA_83703 def: "." [Wikipedia:Body_of_lateral_ventricle] subset: uberon_slim synonym: "central part of lateral ventricle" EXACT [FMA:83703] synonym: "lateral ventricular body" EXACT [FMA:83703] xref: FMA:83703 xref: NIF_GrossAnatomy:birnlex_1287 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain relationship: part_of UBERON:0002285 ! lateral ventricle [Term] id: UBERON:0002656 name: periamygdaloid area alt_id: UBERON:NIF_GrossAnatomy_birnlex_1291-FMA_62485 synonym: "para-amygdaloid cortex" EXACT [FMA:62485] synonym: "periamygdaloid cortex" EXACT [FMA:62485] synonym: "periamygdaloid region" EXACT [FMA:62485] synonym: "semilunar gyrus" EXACT [FMA:62485] synonym: "ventral cortical nucleus of amygdala" EXACT [FMA:62485] xref: FMA:62485 xref: NIF_GrossAnatomy:birnlex_1291 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002657 name: posterior parahippocampal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1295-FMA_67966 synonym: "parahippocampal gyrus (Amaral)" EXACT [FMA:67966] synonym: "parahippocampal gyrus (amaral)" EXACT [] xref: FMA:67966 xref: NIF_GrossAnatomy:birnlex_1295 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0002658 name: medial lemniscus of midbrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_1296-FMA_72461 xref: FMA:72461 xref: NIF_GrossAnatomy:birnlex_1296 is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003002 ! medial lemniscus is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter intersection_of: UBERON:0003002 ! medial lemniscus intersection_of: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002659 name: superior medullary velum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1300-FMA_74508 def: "." [Wikipedia:Superior_medullary_velum] subset: uberon_slim synonym: "anterior medullary velum" EXACT [FMA:74508] xref: FMA:74508 xref: NIF_GrossAnatomy:birnlex_1300 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002660 name: medial longitudinal fasciculus of midbrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_1302-FMA_72454 xref: FMA:72454 xref: NIF_GrossAnatomy:birnlex_1302 is_a: UBERON:0002309 ! medial longitudinal fasciculus is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain intersection_of: UBERON:0002309 ! medial longitudinal fasciculus intersection_of: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002661 name: superior frontal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1303-FMA_61857 def: "." [Wikipedia:Superior_frontal_gyrus] subset: uberon_slim synonym: "marginal gyrus" EXACT [FMA:61857] synonym: "superior frontal convolution" EXACT [FMA:61857] xref: EFO:0001991 xref: FMA:61857 xref: ncithesaurus:Superior_Frontal_Convolution xref: NIF_GrossAnatomy:birnlex_1303 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0001870 ! frontal lobe [Term] id: UBERON:0002662 name: medial pes lemniscus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1310-FMA_72460 synonym: "superficial pes lemniscus" EXACT [FMA:72460] xref: FMA:72460 xref: NIF_GrossAnatomy:birnlex_1310 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002663 name: septal nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1313-FMA_61845 def: "." [Wikipedia:Septal_nuclei] subset: uberon_slim synonym: "parolfactory nuclei" EXACT [FMA:61845] synonym: "septal nuclei" EXACT [FMA:61845] xref: FMA:61845 xref: NIF_GrossAnatomy:birnlex_1313 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002664 name: lateral part of medial mammillary nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1314-FMA_62346 synonym: "intercalated mammillary nucleus" EXACT [FMA:62346] synonym: "intermediate mammillary nucleus" EXACT [FMA:62346] synonym: "lateral mammillary nucleus (Gagel)" EXACT [FMA:62346] synonym: "lateral mammillary nucleus (gagel)" EXACT [] synonym: "lateral subdivision of medial mammillary nucleus" EXACT [FMA:62346] synonym: "medial mammillary nucleus, lateral part" EXACT [FMA:62346] xref: FMA:62346 xref: NIF_GrossAnatomy:birnlex_1314 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002665 name: supracallosal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1316-FMA_61920 def: "." [Wikipedia:Supracallosal_gyrus] subset: uberon_slim synonym: "supracommissural hippocampal rudiment" EXACT [FMA:61920] synonym: "supracommissural hippocampus" EXACT [FMA:61920] xref: FMA:61920 xref: NIF_GrossAnatomy:birnlex_1316 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0002666 name: mesencephalic tract of trigeminal nerve alt_id: UBERON:NIF_GrossAnatomy_birnlex_1318-FMA_72489 synonym: "mesencephalic root of V" EXACT [FMA:72489] synonym: "mesencephalic root of v" EXACT [] synonym: "mesencephalic trigeminal tract" EXACT [FMA:72489] xref: FMA:72489 xref: NIF_GrossAnatomy:birnlex_1318 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002667 name: lateral septal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1321-FMA_61878 synonym: "lateral parolfactory nucleus" EXACT [FMA:61878] xref: FMA:61878 xref: NIF_GrossAnatomy:birnlex_1321 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002668 name: oculomotor nerve fibers alt_id: UBERON:NIF_GrossAnatomy_birnlex_1323-FMA_72457 synonym: "oculomotor nerve fibers" EXACT [FMA:72457] synonym: "root of oculomotor nerve" EXACT [FMA:72457] xref: FMA:72457 xref: NIF_GrossAnatomy:birnlex_1323 is_a: UBERON:0002211 ! segment of nerve is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002669 name: anterior horizontal limb of lateral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1327-FMA_83760 synonym: "anterior branch of lateral sulcus" EXACT [FMA:83760] synonym: "anterior horizontal limb of lateral fissure" EXACT [FMA:83760] synonym: "anterior horizontal ramus of lateral fissure" EXACT [FMA:83760] synonym: "anterior ramus of lateral cerebral sulcus" EXACT [FMA:83760] synonym: "horizontal limb of lateral fissure" EXACT [FMA:83760] synonym: "horizontal ramus of Sylvian fissure" EXACT [FMA:83760] synonym: "horizontal ramus of sylvian fissure" EXACT [] xref: FMA:83760 xref: NIF_GrossAnatomy:birnlex_1327 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002670 name: anterior ascending limb of lateral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1330-FMA_83759 synonym: "anterior ascending limb of lateral fissure" EXACT [FMA:83759] synonym: "anterior ascending ramus of lateral sulcus" EXACT [FMA:83759] synonym: "ascending branch of lateral sulcus" EXACT [FMA:83759] synonym: "ascending ramus of lateral cerebral sulcus" EXACT [FMA:83759] synonym: "ascending ramus of Sylvian fissure" EXACT [FMA:83759] synonym: "ascending ramus of sylvian fissure" EXACT [] synonym: "middle ramus of lateral fissure" EXACT [FMA:83759] synonym: "superior branch of lateral fissure" EXACT [FMA:83759] xref: FMA:83759 xref: NIF_GrossAnatomy:birnlex_1330 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002671 name: pallidotegmental fasciculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1331-FMA_72458 synonym: "pallidotegmental tract" EXACT [FMA:72458] xref: FMA:72458 xref: NIF_GrossAnatomy:birnlex_1331 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002672 name: anterior subcentral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1332-FMA_83765 xref: FMA:83765 xref: NIF_GrossAnatomy:birnlex_1332 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002673 name: vestibular nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1337-FMA_72239 def: "." [Wikipedia:Vestibular_nuclei] subset: uberon_slim synonym: "vestibular nuclei" EXACT [FMA:72239] synonym: "vestibular nuclei in medulla oblongata" EXACT [FMA:72239] xref: FMA:72239 xref: NIF_GrossAnatomy:birnlex_1337 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002674 name: trochlear nerve root alt_id: UBERON:NIF_GrossAnatomy_birnlex_1341-FMA_71116 synonym: "central part of trochlear nerve" EXACT [FMA:71116] synonym: "trochlear nerve fibers" EXACT [FMA:71116] synonym: "trochlear nerve root" EXACT [FMA:71116] xref: FMA:71116 xref: NIF_GrossAnatomy:birnlex_1341 is_a: UBERON:0002211 ! segment of nerve [Term] id: UBERON:0002675 name: diagonal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1344-FMA_83758 xref: FMA:83758 xref: NIF_GrossAnatomy:birnlex_1344 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002676 name: ventral supraoptic decussation alt_id: UBERON:NIF_GrossAnatomy_birnlex_1347-FMA_62052 def: "." [Wikipedia:Ventral_supraoptic_decussation] subset: uberon_slim synonym: "commissure of Gudden" EXACT [FMA:62052] synonym: "commissure of gudden" EXACT [] synonym: "gudden commissure" EXACT [FMA:62052] synonym: "gudden's commissure" EXACT [FMA:62052] synonym: "supraoptic commissures, ventral" EXACT [FMA:62052] synonym: "ventral supra-optic commissure" EXACT [FMA:62052] synonym: "ventral supraoptic commissure (of Meynert)" EXACT [FMA:62052] synonym: "ventral supraoptic commissure (of meynert)" EXACT [] synonym: "ventral supraoptic decussation of Gudden" EXACT [FMA:62052] synonym: "ventral supraoptic decussation of gudden" EXACT [] synonym: "von Gudden's commissure" EXACT [FMA:62052] synonym: "von gudden's commissure" EXACT [] xref: FMA:62052 xref: NIF_GrossAnatomy:birnlex_1347 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002677 name: regional part of medullary raphe nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1349-FMA_83951 synonym: "medullary raphe nuclear complex segment" EXACT [FMA:83951] synonym: "segment of medullary raphe nuclear complex" EXACT [NIF_GrossAnatomy:birnlex_1349] xref: FMA:83951 xref: NIF_GrossAnatomy:birnlex_1349 is_a: UBERON:0002678 ! regional part of medulla oblongata intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002692 ! medullary raphe nuclear complex [Term] id: UBERON:0002678 name: regional part of medulla oblongata alt_id: UBERON:NIF_GrossAnatomy_birnlex_1355-FMA_71011 synonym: "medullary oblongata segment" EXACT [FMA:71011] synonym: "segment of medulla oblongata" EXACT [NIF_GrossAnatomy:birnlex_1355] xref: FMA:71011 xref: NIF_GrossAnatomy:birnlex_1355 is_a: UBERON:0001892 ! rhombomere intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002679 name: anterodorsal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1358-FMA_62141 synonym: "anterodorsal nucleus of thalamus" EXACT [FMA:62141] synonym: "anterodorsal thalamic nucleus" EXACT [FMA:62141] xref: FMA:62141 xref: NIF_GrossAnatomy:birnlex_1358 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002680 name: regional part of metencephalon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1361-FMA_67942 synonym: "metencephalon subdivision" EXACT [FMA:67942] synonym: "segment of metencephalon" EXACT [NIF_GrossAnatomy:birnlex_1361] xref: FMA:67942 xref: NIF_GrossAnatomy:birnlex_1361 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0001892 ! rhombomere intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001895 ! metencephalon [Term] id: UBERON:0002681 name: anteromedial nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1365-FMA_62142 synonym: "anteromedial nucleus of thalamus" EXACT [FMA:62142] synonym: "anteromedial thalamic nucleus" EXACT [FMA:62142] xref: FMA:62142 xref: NIF_GrossAnatomy:birnlex_1365 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002682 name: abducens nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1366-FMA_54504 def: "." [Wikipedia:Abducens_nucleus] subset: uberon_slim synonym: "abducens nerve nucleus" EXACT [FMA:54504] synonym: "abducent nucleus" EXACT [FMA:54504] synonym: "nucleus of abducens nerve" EXACT [FMA:54504] synonym: "nucleus of abducens nerve (VI)" EXACT [FMA:54504] synonym: "nucleus of abducens nerve (vi)" EXACT [] synonym: "sixth cranial nerve nucleus" EXACT [FMA:54504] xref: FMA:54504 xref: ncithesaurus:Abducens_Nucleus xref: NIF_GrossAnatomy:birnlex_1366 xref: ZFA:0000713 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002683 name: rhinal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1368-FMA_83746 def: "." [Wikipedia:Rhinal_sulcus] subset: uberon_slim synonym: "rhinal fissure" EXACT [FMA:83746] xref: FMA:83746 xref: NIF_GrossAnatomy:birnlex_1368 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002684 name: nucleus raphe obscurus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1369-FMA_72585 def: "." [Wikipedia:Nucleus_raphe_obscurus] subset: uberon_slim synonym: "obscurus raphe nucleus" EXACT [FMA:72585] synonym: "raphe obscurus nucleus" EXACT [FMA:72585] xref: FMA:72585 xref: NIF_GrossAnatomy:birnlex_1369 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002685 name: anteroventral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1372-FMA_62143 synonym: "anterior ventral nucleus of thalamus" EXACT [FMA:62143] synonym: "anteroprincipal thalamic nucleus" EXACT [FMA:62143] synonym: "anteroventral nucleus of thalamus" EXACT [FMA:62143] synonym: "anteroventral thalamic nucleus" EXACT [FMA:62143] xref: FMA:62143 xref: NIF_GrossAnatomy:birnlex_1372 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002686 name: angular gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1376-FMA_61898 def: "." [Wikipedia:Angular_gyrus] subset: uberon_slim synonym: "middle part of inferior parietal lobule" EXACT [FMA:61898] synonym: "preoccipital gyrus" EXACT [FMA:61898] xref: FMA:61898 xref: ncithesaurus:Angular_Gyrus xref: NIF_GrossAnatomy:birnlex_1376 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0002687 name: area x alt_id: UBERON:NIF_GrossAnatomy_birnlex_1379-FMA_62198 synonym: "anteromedial part of ventral lateral posterior nucleus (Jones)" EXACT [FMA:62198] synonym: "anteromedial part of ventral lateral posterior nucleus (jones)" EXACT [] xref: FMA:62198 xref: NIF_GrossAnatomy:birnlex_1379 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001925 ! ventral lateral nucleus [Term] id: UBERON:0002688 name: supramarginal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1381-FMA_61897 def: "." [Wikipedia:Supramarginal_gyrus] subset: uberon_slim synonym: "anterior part of inferior parietal lobule" EXACT [FMA:61897] synonym: "inferior parietal lobule (Krieg)" EXACT [FMA:61897] synonym: "inferior parietal lobule (krieg)" EXACT [] xref: FMA:61897 xref: ncithesaurus:Supramarginal_Gyrus xref: NIF_GrossAnatomy:birnlex_1381 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0001872 ! parietal lobe [Term] id: UBERON:0002689 name: supraoptic crest alt_id: UBERON:NIF_GrossAnatomy_birnlex_1400-FMA_62315 synonym: "vascular organ of lamina terminalis" EXACT [FMA:62315] xref: FMA:62315 xref: NIF_GrossAnatomy:birnlex_1400 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002690 name: anteroventral periventricular nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1401-FMA_62314 xref: FMA:62314 xref: NIF_GrossAnatomy:birnlex_1401 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002691 name: ventral tegmental area alt_id: UBERON:NIF_GrossAnatomy_birnlex_1415-FMA_72438 def: "." [Wikipedia:Ventral_tegmental_area] subset: uberon_slim synonym: "ventral tegmental area of Tsai" EXACT [FMA:72438] synonym: "ventral tegmental area of tsai" EXACT [] synonym: "ventral tegmental nucleus (Tsai)" EXACT [FMA:72438] synonym: "ventral tegmental nucleus (tsai)" EXACT [] synonym: "ventral tegmental nucleus of Tsai" EXACT [FMA:72438] synonym: "ventral tegmental nucleus of tsai" EXACT [] xref: EFO:0001935 xref: FMA:72438 xref: NIF_GrossAnatomy:birnlex_1415 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002692 name: medullary raphe nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1420-FMA_68874 synonym: "raphe nuclei of medulla" EXACT [FMA:68874] synonym: "raphe of medulla oblongata" EXACT [FMA:68874] xref: FMA:68874 xref: NIF_GrossAnatomy:birnlex_1420 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002693 name: occipitotemporal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1422-FMA_74518 synonym: "inferior temporal fissure" EXACT [FMA:74518] synonym: "inferior temporal sulcus (Roberts)" EXACT [FMA:74518] synonym: "inferior temporal sulcus (roberts)" EXACT [] synonym: "inferior temporal sulcus (Szikla)" EXACT [FMA:74518] synonym: "inferior temporal sulcus (szikla)" EXACT [] synonym: "inferior temporal sulcus-2" EXACT [FMA:74518] synonym: "occipito-temporal sulcus" EXACT [FMA:74518] synonym: "third temporal sulcus" EXACT [FMA:74518] xref: FMA:74518 xref: NIF_GrossAnatomy:birnlex_1422 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002694 name: anterior hypothalamic commissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_1424-FMA_62053 synonym: "anterior hypothalamic commissure (Ganser)" EXACT [FMA:62053] synonym: "anterior hypothalamic commissure (ganser)" EXACT [] synonym: "anterior hypothalamic decussation of Ganser" EXACT [FMA:62053] synonym: "anterior hypothalamic decussation of ganser" EXACT [] xref: FMA:62053 xref: NIF_GrossAnatomy:birnlex_1424 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002695 name: parieto-occipital sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1428-FMA_83754 def: "." [Wikipedia:Parieto-occipital_sulcus] subset: uberon_slim synonym: "parieto-occipital fissure" EXACT [FMA:83754] synonym: "parieto-occipital incisure" EXACT [FMA:83754] synonym: "parietooccipital sulcus" EXACT [FMA:83754] xref: FMA:83754 xref: ncithesaurus:Parieto-occipital_Fissure xref: NIF_GrossAnatomy:birnlex_1428 xref: OpenCyc:Mx4rv7l_DJwpEbGdrcN5Y29ycA is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002696 name: cuneiform nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1430-FMA_72427 synonym: "parabigeminal area (Mai)" EXACT [FMA:72427] synonym: "parabigeminal area (mai)" EXACT [] xref: FMA:72427 xref: NIF_GrossAnatomy:birnlex_1430 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002697 name: dorsal supraoptic decussation alt_id: UBERON:NIF_GrossAnatomy_birnlex_1433-FMA_62051 synonym: "commissure of Meynert" EXACT [FMA:62051] synonym: "commissure of meynert" EXACT [] synonym: "dorsal supra-optic commissure" EXACT [FMA:62051] synonym: "dorsal supraoptic commissure" EXACT [FMA:62051] synonym: "dorsal supraoptic commissure (of Ganser)" EXACT [FMA:62051] synonym: "dorsal supraoptic commissure (of ganser)" EXACT [] synonym: "dorsal supraoptic decussation of Meynert" EXACT [FMA:62051] synonym: "dorsal supraoptic decussation of meynert" EXACT [] synonym: "ganser's commissure" EXACT [FMA:62051] synonym: "meynert's commissure" EXACT [FMA:62051] synonym: "supraoptic commissure of Meynert" EXACT [FMA:62051] synonym: "supraoptic commissure of meynert" EXACT [] synonym: "supraoptic commissures, dorsal" EXACT [FMA:62051] xref: FMA:62051 xref: NIF_GrossAnatomy:birnlex_1433 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002698 name: preoccipital notch alt_id: UBERON:NIF_GrossAnatomy_birnlex_1436-FMA_83739 synonym: "occipital notch" EXACT [FMA:83739] synonym: "preoccipital incisura" EXACT [FMA:83739] synonym: "preoccipital incisure" EXACT [FMA:83739] xref: FMA:83739 xref: NIF_GrossAnatomy:birnlex_1436 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002699 name: supraopticohypophysial tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1440-FMA_62054 synonym: "supra-opticohypophysial tract" EXACT [FMA:62054] synonym: "supraopticohypophyseal tract" EXACT [FMA:62054] xref: FMA:62054 xref: NIF_GrossAnatomy:birnlex_1440 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002700 name: subcuneiform nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1441-FMA_72428 synonym: "subcuneiform area of midbrain" EXACT [FMA:72428] xref: FMA:72428 xref: NIF_GrossAnatomy:birnlex_1441 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002701 name: anterior median oculomotor nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1445-FMA_72423 synonym: "anterior median nucleus of oculomotor nerve" EXACT [FMA:72423] xref: FMA:72423 xref: NIF_GrossAnatomy:birnlex_1445 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002702 name: middle frontal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1451-FMA_61859 def: "." [Wikipedia:Middle_frontal_gyrus] subset: uberon_slim synonym: "intermediate frontal gyrus" EXACT [FMA:61859] synonym: "medial frontal gyrus" EXACT [FMA:61859] xref: FMA:61859 xref: ncithesaurus:Middle_Frontal_Gyrus xref: NIF_GrossAnatomy:birnlex_1451 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0001870 ! frontal lobe [Term] id: UBERON:0002703 name: precentral gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1455-FMA_61894 def: "." [Wikipedia:Precentral_gyrus] subset: uberon_slim synonym: "precentral convolution" EXACT [FMA:61894] synonym: "prerolandic gyrus" EXACT [FMA:61894] xref: EFO:0001373 xref: FMA:61894 xref: ncithesaurus:Precentral_Gyrus xref: NIF_GrossAnatomy:birnlex_1455 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0001870 ! frontal lobe [Term] id: UBERON:0002704 name: metathalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1461-FMA_62023 def: "." [Wikipedia:Metathalamus] subset: uberon_slim synonym: "geniculate group of the dorsal thalamus" EXACT [FMA:62023] xref: FMA:62023 xref: NIF_GrossAnatomy:birnlex_1461 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0002705 name: midline nuclear group alt_id: UBERON:NIF_GrossAnatomy_birnlex_1462-FMA_62020 def: "." [Wikipedia:Midline_nuclear_group] subset: uberon_slim synonym: "median nuclei of thalamus" EXACT [FMA:62020] synonym: "midline nuclear group" EXACT [FMA:62020] synonym: "midline nuclei of thalamus" EXACT [FMA:62020] synonym: "periventricular nuclei of thalamus" EXACT [FMA:62020] xref: FMA:62020 xref: NIF_GrossAnatomy:birnlex_1462 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0002706 name: posterior nucleus of hypothalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1463-FMA_62350 synonym: "posterior hypothalamic area" EXACT [FMA:62350] synonym: "posterior hypothalamic nucleus" EXACT [FMA:62350] xref: BTO:0002461 xref: FMA:62350 xref: NIF_GrossAnatomy:birnlex_1463 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002707 name: pyramidal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1464-FMA_72634 def: "." [Wikipedia:Pyramidal_tract] subset: uberon_slim xref: FMA:72634 xref: NIF_GrossAnatomy:birnlex_1464 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002708 name: posterior periventricular nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1466-FMA_62349 synonym: "periventricular nucleus, posterior subdivision" EXACT [FMA:62349] synonym: "posterior periventricular nucleus" EXACT [FMA:62349] xref: BTO:0002479 xref: FMA:62349 xref: NIF_GrossAnatomy:birnlex_1466 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002709 name: posterior nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1467-FMA_62024 synonym: "posterior complex of thalamus" EXACT [FMA:62024] synonym: "posterior nuclear complex" EXACT [FMA:62024] synonym: "posterior nuclear complex of thalamus" EXACT [FMA:62024] synonym: "posterior thalamic nuclear group" EXACT [FMA:62024] xref: BTO:0002462 xref: FMA:62024 xref: NIF_GrossAnatomy:birnlex_1467 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0002710 name: cingulate sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1468-FMA_83748 def: "." [Wikipedia:Cingulate_sulcus] subset: uberon_slim synonym: "calloso-marginal sulcus" EXACT [FMA:83748] synonym: "callosomarginal fissure" EXACT [FMA:83748] synonym: "callosomarginal sulcus" EXACT [FMA:83748] synonym: "cingulate fissure" EXACT [FMA:83748] xref: FMA:83748 xref: NIF_GrossAnatomy:birnlex_1468 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002711 name: nucleus of posterior commissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_1470-FMA_68463 synonym: "posterior commissure nucleus" EXACT [FMA:68463] xref: FMA:68463 xref: NIF_GrossAnatomy:birnlex_1470 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002712 name: premammillary nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1473-FMA_62348 synonym: "premammillary nuclei" EXACT [FMA:62348] xref: FMA:62348 xref: NIF_GrossAnatomy:birnlex_1473 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002713 name: circular sulcus of insula alt_id: UBERON:NIF_GrossAnatomy_birnlex_1475-FMA_83753 synonym: "circular fissure" EXACT [FMA:83753] synonym: "circular sulcus (of Reil)" EXACT [FMA:83753] synonym: "circular sulcus (of reil)" EXACT [] synonym: "circuminsular sulcus" EXACT [FMA:83753] synonym: "limiting fissure" EXACT [FMA:83753] synonym: "marginal sulcus of insula" EXACT [FMA:83753] xref: FMA:83753 xref: NIF_GrossAnatomy:birnlex_1475 is_a: UBERON:0002912 ! marginal sulcus intersection_of: UBERON:0002912 ! marginal sulcus intersection_of: part_of UBERON:0002022 ! insula [Term] id: UBERON:0002714 name: rubrospinal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1476-FMA_72640 def: "long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the red nucleus of the midbrain towards target cells in the spinal cord[GO]." [Wikipedia:Rubrospinal_tract] subset: uberon_slim synonym: "monakow's tract" EXACT [FMA:72640] xref: FMA:72640 xref: NIF_GrossAnatomy:birnlex_1476 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002715 name: spinal trigeminal tract of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_1477-FMA_72625 xref: FMA:72625 xref: NIF_GrossAnatomy:birnlex_1477 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002716 name: collateral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1480-FMA_83751 def: "." [Wikipedia:Collateral_fissure] subset: uberon_slim synonym: "collateral fissure" EXACT [FMA:83751] xref: FMA:83751 xref: ncithesaurus:Collateral_Fissure xref: NIF_GrossAnatomy:birnlex_1480 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002717 name: rostral interstitial nucleus of medial longitudinal fasciculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1481-FMA_72433 def: "." [Wikipedia:Rostral_interstitial_nucleus_of_medial_longitudinal_fasciculus] subset: uberon_slim synonym: "rostral interstitial nucleus of MLF" EXACT [FMA:72433] synonym: "rostral interstitial nucleus of mlf" EXACT [] xref: FMA:72433 xref: NIF_GrossAnatomy:birnlex_1481 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0002718 name: solitary tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1483-FMA_72619 def: "." [Wikipedia:Solitary_tract] subset: uberon_slim synonym: "respiratory bundle of Gierke" EXACT [FMA:72619] synonym: "respiratory bundle of gierke" EXACT [] xref: FMA:72619 xref: NIF_GrossAnatomy:birnlex_1483 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002719 name: spino-olivary tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1484-FMA_72643 def: "." [Wikipedia:Spino-olivary_tract] subset: uberon_slim synonym: "helweg's tract" EXACT [FMA:72643] xref: FMA:72643 xref: NIF_GrossAnatomy:birnlex_1484 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002720 name: mammillary peduncle alt_id: UBERON:NIF_GrossAnatomy_birnlex_1486-FMA_62061 synonym: "peduncle of mammillary body" EXACT [FMA:62061] xref: FMA:62061 xref: NIF_GrossAnatomy:birnlex_1486 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002721 name: lateral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1487-FMA_77801 def: "." [Wikipedia:Lateral_sulcus] subset: uberon_slim synonym: "fissure of Sylvius" EXACT [FMA:77801] synonym: "fissure of sylvius" EXACT [] synonym: "lateral cerebral fissure" EXACT [FMA:77801] synonym: "lateral cerebral sulcus" EXACT [FMA:77801] synonym: "lateral fissure" EXACT [FMA:77801] synonym: "lateral fissure of Sylvius" EXACT [FMA:77801] synonym: "lateral fissure of sylvius" EXACT [] synonym: "transverse cerebral fissure" EXACT [FMA:77801] xref: FMA:77801 xref: ncithesaurus:Fissure_of_Sylvius xref: NIF_GrossAnatomy:birnlex_1487 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002722 name: trochlear nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1488-FMA_54518 def: "." [Wikipedia:Trochlear_nucleus] subset: uberon_slim synonym: "fourth cranial nerve nucleus" EXACT [FMA:54518] synonym: "nucleus of trochlear nerve" EXACT [FMA:54518] xref: FMA:54518 xref: NIF_GrossAnatomy:birnlex_1488 is_a: UBERON:0000126 ! implied link automatically realized ! cranial nerve nucleus is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001644 ! trochlear nerve [Term] id: UBERON:0002723 name: mammillary princeps fasciculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1492-FMA_62057 synonym: "principal mammillary fasciculus" EXACT [FMA:62057] synonym: "principle mamillary fasciculus" EXACT [FMA:62057] xref: FMA:62057 xref: NIF_GrossAnatomy:birnlex_1492 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002724 name: limen of insula alt_id: UBERON:NIF_GrossAnatomy_birnlex_1493-FMA_75266 synonym: "angulus gyri olfactorii lateralis" EXACT [FMA:75266] synonym: "insula limen" EXACT [FMA:75266] xref: FMA:75266 xref: NIF_GrossAnatomy:birnlex_1493 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002725 name: mammillotegmental fasciculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1497-FMA_62058 synonym: "gudden tract" EXACT [FMA:62058] synonym: "mammillotegmental tract" EXACT [FMA:62058] synonym: "von Gudden's tract" EXACT [FMA:62058] synonym: "von gudden's tract" EXACT [] xref: FMA:62058 xref: NIF_GrossAnatomy:birnlex_1497 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002726 name: cervical spinal cord alt_id: UBERON:NIF_GrossAnatomy_birnlex_1499-FMA_71166 synonym: "cervical segments of spinal cord [1-8]" EXACT [FMA:71166] synonym: "cervical spinal cord" EXACT [FMA:71166] xref: FMA:71166 xref: ncithesaurus:Cervical_Spinal_Cord xref: NIF_GrossAnatomy:birnlex_1499 is_a: UBERON:0001948 ! regional part of spinal cord [Term] id: UBERON:0002727 name: medial medullary lamina alt_id: UBERON:NIF_GrossAnatomy_birnlex_1501-FMA_62470 synonym: "inner medullary lamina" EXACT [FMA:62470] synonym: "internal medullary lamina of corpus striatum" EXACT [FMA:62470] synonym: "internal medullary lamina of globus pallidus" EXACT [FMA:62470] synonym: "internal medullary lamina of lentiform nucleus" EXACT [FMA:62470] synonym: "medial medullary lamina" EXACT [FMA:62470] synonym: "medial medullary lamina of corpus striatum" EXACT [FMA:62470] synonym: "medial medullary lamina of pallidum" EXACT [FMA:62470] synonym: "medial medullary stria" EXACT [FMA:62470] xref: FMA:62470 xref: NIF_GrossAnatomy:birnlex_1501 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001875 ! globus pallidus [Term] id: UBERON:0002728 name: entorhinal cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1508-FMA_72356 def: "." [Wikipedia:Entorhinal_cortex] subset: uberon_slim synonym: "area 28 of Brodmann (Crosby)" EXACT [FMA:72356] synonym: "area 28 of brodmann (crosby)" EXACT [] synonym: "entorhinal cortex" EXACT [FMA:72356] synonym: "secondary olfactory cortex" EXACT [FMA:72356] synonym: "secondary olfactory cortical area (Carpenter)" EXACT [FMA:72356] synonym: "secondary olfactory cortical area (carpenter)" EXACT [] xref: EFO:0001920 xref: FMA:72356 xref: NIF_GrossAnatomy:birnlex_1508 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002729 name: claustral amygdaloid area alt_id: UBERON:NIF_GrossAnatomy_birnlex_1515-FMA_61869 synonym: "claustrum diffusa" EXACT [FMA:61869] synonym: "claustrum parvum" EXACT [FMA:61869] synonym: "ventral claustrum" EXACT [FMA:61869] synonym: "ventral portion of claustrum" EXACT [FMA:61869] xref: FMA:61869 xref: NIF_GrossAnatomy:birnlex_1515 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002730 name: regional part of thalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1517-FMA_67705 synonym: "segment of thalamus" EXACT [NIF_GrossAnatomy:birnlex_1517] synonym: "thalamus segment" EXACT [FMA:67705] xref: FMA:67705 xref: NIF_GrossAnatomy:birnlex_1517 is_a: UBERON:0002784 ! regional part of diencephalon intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0002731 name: vestibulocochlear nerve root alt_id: UBERON:NIF_GrossAnatomy_birnlex_1519-FMA_72499 synonym: "central part of vestibulocochlear nerve" EXACT [FMA:72499] synonym: "statoacoustic nerve fibers" EXACT [FMA:72499] synonym: "vestibulocochlear nerve fibers" EXACT [FMA:72499] synonym: "vestibulocochlear nerve roots" EXACT [FMA:72499] xref: FMA:72499 xref: NIF_GrossAnatomy:birnlex_1519 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002732 name: longitudinal pontine fibers alt_id: UBERON:NIF_GrossAnatomy_birnlex_1523-FMA_72513 synonym: "longitudinal fasciculus of the pons" EXACT [FMA:72513] synonym: "longitudinal pontine fibers" EXACT [FMA:72513] synonym: "longitudinal pontine fibres" EXACT [FMA:72513] xref: FMA:72513 xref: NIF_GrossAnatomy:birnlex_1523 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002733 name: intralaminar nuclear group alt_id: UBERON:NIF_GrossAnatomy_birnlex_1530-FMA_62021 def: "." [Wikipedia:Intralaminar_thalamic_nuclei] subset: uberon_slim synonym: "intralaminar nuclear group" EXACT [FMA:62021] synonym: "intralaminar nuclei of thalamus" EXACT [FMA:62021] synonym: "intralaminar thalamic nuclei" EXACT [FMA:62021] synonym: "nonspecific thalamic system" EXACT [FMA:62021] xref: FMA:62021 xref: NIF_GrossAnatomy:birnlex_1530 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0002734 name: superior temporal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1534-FMA_83783 synonym: "parallel sulcus" EXACT [FMA:83783] synonym: "sulcus t1" EXACT [FMA:83783] synonym: "superior temporal fissure" EXACT [FMA:83783] xref: FMA:83783 xref: ncithesaurus:Superior_Temporal_Sulcus xref: NIF_GrossAnatomy:birnlex_1534 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002735 name: transverse pontine fibers alt_id: UBERON:NIF_GrossAnatomy_birnlex_1535-FMA_72514 synonym: "superficial transverse fibers of pons" EXACT [FMA:72514] synonym: "transverse fibers of pons" EXACT [FMA:72514] synonym: "transverse pontine fibers" EXACT [FMA:72514] synonym: "transverse pontine fibres" EXACT [FMA:72514] xref: FMA:72514 xref: NIF_GrossAnatomy:birnlex_1535 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002736 name: lateral nuclear group alt_id: UBERON:NIF_GrossAnatomy_birnlex_1537-FMA_62174 def: "." [Wikipedia:Lateral_nuclear_group] subset: uberon_slim synonym: "lateral nuclear group" EXACT [FMA:62174] synonym: "lateral nucleus of thalamus" EXACT [FMA:62174] synonym: "lateral thalamic nuclei" EXACT [FMA:62174] xref: FMA:62174 xref: NIF_GrossAnatomy:birnlex_1537 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0002737 name: lateral inferior limiting sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1540-FMA_74523 xref: FMA:74523 xref: NIF_GrossAnatomy:birnlex_1540 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002738 name: isthmus of cingulate gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1541-FMA_62502 synonym: "cingulate gyrus isthmus" EXACT [FMA:62502] synonym: "isthmus of fornicate gyrus" EXACT [FMA:62502] synonym: "isthmus of limbic lobe" EXACT [FMA:62502] xref: FMA:62502 xref: NIF_GrossAnatomy:birnlex_1541 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002739 name: medial dorsal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1543-FMA_62156 def: "." [Wikipedia:Medial_dorsal_nucleus] subset: uberon_slim synonym: "dorsal medial nucleus of thalamus" EXACT [FMA:62156] synonym: "dorsomedial nuclear group" EXACT [FMA:62156] synonym: "dorsomedial nucleus" EXACT [FMA:62156] synonym: "dorsomedial nucleus of thalamus" EXACT [FMA:62156] synonym: "medial dorsal nucleus" EXACT [FMA:62156] synonym: "medial dorsal nucleus of thalamus" EXACT [FMA:62156] synonym: "medial nuclear group" EXACT [FMA:62156] synonym: "medial thalamic nuclei" EXACT [FMA:62156] synonym: "medial thalamic nucleus" EXACT [FMA:62156] synonym: "mediodorsal nucleus" EXACT [FMA:62156] synonym: "mediodorsal thalamic nucleus" EXACT [FMA:62156] xref: BTO:0002453 xref: FMA:62156 xref: NIF_GrossAnatomy:birnlex_1543 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0002740 name: posterior cingulate gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1546-FMA_61924 def: "." [Wikipedia:Posterior_cingulate_gyrus] subset: uberon_slim xref: FMA:61924 xref: NIF_GrossAnatomy:birnlex_1546 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0002741 name: diagonal band alt_id: UBERON:NIF_GrossAnatomy_birnlex_1551-FMA_61973 def: "." [Wikipedia:Diagonal_band_of_Broca] subset: uberon_slim synonym: "broca's diagonal band" EXACT [FMA:61973] synonym: "broca's diagonal gyrus" EXACT [FMA:61973] synonym: "diagonal band of Broca" EXACT [FMA:61973] synonym: "diagonal band of broca" EXACT [] synonym: "diagonal gyrus" EXACT [FMA:61973] synonym: "olfactory fasciculus" EXACT [FMA:61973] synonym: "olfactory radiations of Zuckerkandl" EXACT [FMA:61973] synonym: "olfactory radiations of zuckerkandl" EXACT [] xref: BTO:0002445 xref: FMA:61973 xref: NIF_GrossAnatomy:birnlex_1551 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002742 name: lamina of septum pellucidum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1554-FMA_62472 synonym: "septum pellucidum lamina" EXACT [FMA:62472] xref: FMA:62472 xref: NIF_GrossAnatomy:birnlex_1554 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002743 name: basal forebrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_1560-FMA_77700 def: "." [Wikipedia:Basal_forebrain] subset: uberon_slim xref: BTO:0002444 xref: FMA:77700 xref: NIF_GrossAnatomy:birnlex_1560 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0002744 name: hilum of dentate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1561-FMA_72548 synonym: "dentate nuclear hilum" EXACT [FMA:72548] xref: FMA:72548 xref: NIF_GrossAnatomy:birnlex_1561 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002745 name: ventral amygdalofugal projection alt_id: UBERON:NIF_GrossAnatomy_birnlex_1563-FMA_61977 xref: FMA:61977 xref: NIF_GrossAnatomy:birnlex_1563 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002746 name: intermediate periventricular nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1564-FMA_62328 synonym: "intermediate periventricular nucleus of hypothalamus" EXACT [FMA:62328] synonym: "periventricular nucleus at the tuberal level" EXACT [FMA:62328] xref: FMA:62328 xref: NIF_GrossAnatomy:birnlex_1564 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002747 name: neodentate part of dentate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1567-FMA_72539 synonym: "neodentate portion of dentate nucleus" EXACT [FMA:72539] xref: FMA:72539 xref: NIF_GrossAnatomy:birnlex_1567 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0002132 ! dentate nucleus [Term] id: UBERON:0002748 name: medial lemniscus of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_1570-FMA_72621 xref: FMA:72621 xref: NIF_GrossAnatomy:birnlex_1570 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003002 ! medial lemniscus is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter intersection_of: UBERON:0003002 ! medial lemniscus intersection_of: part_of UBERON:0000958 ! medulla relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002749 name: regional part of cerebellar cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_1571-FMA_76924 synonym: "cerebellar cortical segment" EXACT [FMA:76924] synonym: "segment of cerebellar cortex" EXACT [NIF_GrossAnatomy:birnlex_1571] xref: FMA:76924 xref: NIF_GrossAnatomy:birnlex_1571 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0002750 name: medial longitudinal fasciculus of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_1574-FMA_72618 xref: FMA:72618 xref: NIF_GrossAnatomy:birnlex_1574 is_a: UBERON:0002309 ! medial longitudinal fasciculus is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata intersection_of: UBERON:0002309 ! medial longitudinal fasciculus intersection_of: part_of UBERON:0000958 ! medulla relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002751 name: inferior temporal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1577-FMA_61907 def: "." [Wikipedia:Inferior_temporal_gyrus] subset: uberon_slim synonym: "lateral occipitotemporal gyrus (Heimer-83)" EXACT [FMA:61907] synonym: "lateral occipitotemporal gyrus (heimer-83)" EXACT [] xref: FMA:61907 xref: ncithesaurus:Inferior_Temporal_Gyrus xref: NIF_GrossAnatomy:birnlex_1577 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002752 name: olivocerebellar tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1579-FMA_72638 def: "." [Wikipedia:Olivocerebellar_tract] subset: uberon_slim xref: FMA:72638 xref: NIF_GrossAnatomy:birnlex_1579 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002753 name: posterior spinocerebellar tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1585-FMA_72641 def: "." [Wikipedia:Posterior_spinocerebellar_tract] subset: uberon_slim synonym: "dorsal spinocerebellar tract" EXACT [FMA:72641] synonym: "flechsig's tract" EXACT [FMA:72641] xref: FMA:72641 xref: NIF_GrossAnatomy:birnlex_1585 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002754 name: predorsal bundle alt_id: UBERON:NIF_GrossAnatomy_birnlex_1590-FMA_72614 synonym: "predorsal bundle of Edinger" EXACT [FMA:72614] synonym: "predorsal bundle of edinger" EXACT [] synonym: "predorsal fasciculus" EXACT [FMA:72614] synonym: "tectospinal fibers" EXACT [FMA:72614] xref: FMA:72614 xref: NIF_GrossAnatomy:birnlex_1590 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002755 name: pyramidal decussation alt_id: UBERON:NIF_GrossAnatomy_birnlex_1594-FMA_72633 def: "." [Wikipedia:Pyramidal_decussation] subset: uberon_slim synonym: "corticospinal decussation" EXACT [FMA:72633] synonym: "decussation of corticospinal tract" EXACT [FMA:72633] synonym: "decussation of pyramidal tract fibers" EXACT [FMA:72633] synonym: "decussation of pyramids" EXACT [FMA:72633] synonym: "decussation of pyramids of medulla" EXACT [FMA:72633] synonym: "motor decussation" EXACT [FMA:72633] synonym: "motor decussation of medulla" EXACT [FMA:72633] xref: FMA:72633 xref: NIF_GrossAnatomy:birnlex_1594 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002756 name: anterior cingulate gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1603-FMA_61916 def: "." [Wikipedia:Anterior_cingulate_gyrus] subset: uberon_slim xref: FMA:61916 xref: NIF_GrossAnatomy:birnlex_1603 is_a: UBERON:0000200 ! gyrus [Term] id: UBERON:0002757 name: regional part of epithalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1607-FMA_62013 synonym: "epithalamus segment" EXACT [FMA:62013] synonym: "segment of epithalamus" EXACT [NIF_GrossAnatomy:birnlex_1607] xref: FMA:62013 xref: NIF_GrossAnatomy:birnlex_1607 is_a: UBERON:0002784 ! regional part of diencephalon intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001899 ! epithalamus [Term] id: UBERON:0002758 name: dorsal nucleus of medial geniculate body alt_id: UBERON:NIF_GrossAnatomy_birnlex_1608-FMA_62216 synonym: "dorsal nucleus of medial geniculate complex" EXACT [FMA:62216] xref: BTO:0002673 xref: FMA:62216 xref: NIF_GrossAnatomy:birnlex_1608 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001927 ! medial geniculate body [Term] id: UBERON:0002759 name: magnocellular nucleus of medial geniculate body alt_id: UBERON:NIF_GrossAnatomy_birnlex_1612-FMA_62218 synonym: "medial division of medial geniculate body" EXACT [FMA:62218] synonym: "medial geniculate complex, medial part" EXACT [FMA:62218] synonym: "medial geniculate nucleus, medial part" EXACT [FMA:62218] synonym: "medial magnocellular nucleus of medial geniculate body" EXACT [FMA:62218] synonym: "medial nucleus of medial geniculate body" EXACT [FMA:62218] xref: BTO:0002672 xref: FMA:62218 xref: NIF_GrossAnatomy:birnlex_1612 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001927 ! medial geniculate body [Term] id: UBERON:0002760 name: ventral corticospinal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1618-FMA_72636 def: "." [Wikipedia:Ventral_corticospinal_tract] subset: uberon_slim synonym: "anterior corticospinal tract" EXACT [FMA:72636] synonym: "anterior pyramidal tract" EXACT [FMA:72636] synonym: "anterior tract of Turck" EXACT [FMA:72636] synonym: "anterior tract of turck" EXACT [] synonym: "bundle of Turck" EXACT [FMA:72636] synonym: "bundle of turck" EXACT [] synonym: "column of Turck" EXACT [FMA:72636] synonym: "column of turck" EXACT [] xref: FMA:72636 xref: NIF_GrossAnatomy:birnlex_1618 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002761 name: inferior frontal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1619-FMA_83757 def: "." [Wikipedia:Inferior_frontal_sulcus] subset: uberon_slim synonym: "inferior frontal fissure" EXACT [FMA:83757] synonym: "sulcus f2" EXACT [FMA:83757] xref: FMA:83757 xref: ncithesaurus:Inferior_Frontal_Sulcus xref: NIF_GrossAnatomy:birnlex_1619 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002762 name: internal medullary lamina of thalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1621-FMA_62079 synonym: "internal medullary lamina of thalamus" EXACT [FMA:62079] xref: FMA:62079 xref: NIF_GrossAnatomy:birnlex_1621 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002763 name: accessory medullary lamina alt_id: UBERON:NIF_GrossAnatomy_birnlex_1626-FMA_62471 synonym: "accessory medullary lamina" EXACT [FMA:62471] synonym: "accessory medullary lamina of corpus striatum" EXACT [FMA:62471] synonym: "incomplete medullary lamina of globus pallidus" EXACT [FMA:62471] xref: FMA:62471 xref: NIF_GrossAnatomy:birnlex_1626 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001875 ! globus pallidus [Term] id: UBERON:0002764 name: inferior precentral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1627-FMA_83764 synonym: "inferior part of precentral fissure" EXACT [FMA:83764] xref: FMA:83764 xref: NIF_GrossAnatomy:birnlex_1627 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002765 name: lateral medullary lamina alt_id: UBERON:NIF_GrossAnatomy_birnlex_1634-FMA_62469 synonym: "external medullary lamina of corpus striatum" EXACT [FMA:62469] synonym: "external medullary lamina of globus pallidus" EXACT [FMA:62469] synonym: "external medullary lamina of lentiform nucleus" EXACT [FMA:62469] synonym: "lateral medullary lamina" EXACT [FMA:62469] synonym: "lateral medullary lamina of corpus striatum" EXACT [FMA:62469] synonym: "lateral medullary lamina of pallidum" EXACT [FMA:62469] synonym: "lateral medullary stria" EXACT [FMA:62469] synonym: "outer medullary lamina" EXACT [FMA:62469] xref: FMA:62469 xref: NIF_GrossAnatomy:birnlex_1634 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0001875 ! globus pallidus [Term] id: UBERON:0002766 name: fusiform gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1641-FMA_61908 def: "." [Wikipedia:Fusiform_gyrus] subset: uberon_slim synonym: "lateral occipitotemporal gyrus" EXACT [FMA:61908] synonym: "medial occipitotemporal gyrus-1 (Heimer)" EXACT [FMA:61908] synonym: "medial occipitotemporal gyrus-1 (heimer)" EXACT [] synonym: "occipitotemporal gyrus" EXACT [FMA:61908] xref: FMA:61908 xref: NIF_GrossAnatomy:birnlex_1641 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002767 name: inferior rostral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1642-FMA_83767 xref: FMA:83767 xref: NIF_GrossAnatomy:birnlex_1642 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002768 name: vestibulospinal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1643-FMA_72646 def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the vestibular nucleus of the pons towards target cells in the spinal cord[GO]." [Wikipedia:Vestibulospinal_tract] subset: uberon_slim xref: FMA:72646 xref: NIF_GrossAnatomy:birnlex_1643 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002769 name: superior temporal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1648-FMA_61905 def: "." [Wikipedia:Superior_temporal_gyrus] subset: uberon_slim xref: EFO:0001944 xref: FMA:61905 xref: ncithesaurus:Superior_Temporal_Gyrus xref: NIF_GrossAnatomy:birnlex_1648 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002770 name: posterior hypothalamic region alt_id: UBERON:NIF_GrossAnatomy_birnlex_1651-FMA_62029 synonym: "mammillary level of hypothalamus" EXACT [FMA:62029] synonym: "mammillary region" EXACT [FMA:62029] synonym: "posterior hypothalamus" EXACT [FMA:62029] xref: FMA:62029 xref: NIF_GrossAnatomy:birnlex_1651 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus relationship: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0002771 name: middle temporal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1653-FMA_61906 def: "." [Wikipedia:Middle_temporal_gyrus] subset: uberon_slim synonym: "intermediate temporal gyrus" EXACT [FMA:61906] xref: EFO:0002466 xref: FMA:61906 xref: ncithesaurus:Middle_Temporal_Gyrus xref: NIF_GrossAnatomy:birnlex_1653 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002772 name: olfactory sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1655-FMA_83769 def: "." [Wikipedia:Olfactory_sulcus] subset: uberon_slim xref: FMA:83769 xref: ncithesaurus:Olfactory_Sulcus xref: NIF_GrossAnatomy:birnlex_1655 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002773 name: anterior transverse temporal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1657-FMA_61909 synonym: "anterior transverse temporal convolution of Heschl" EXACT [FMA:61909] synonym: "anterior transverse temporal convolution of heschl" EXACT [] synonym: "first transverse gyrus of Heschl" EXACT [FMA:61909] synonym: "first transverse gyrus of heschl" EXACT [] synonym: "great transverse gyrus of Heschl" EXACT [FMA:61909] synonym: "great transverse gyrus of heschl" EXACT [] xref: FMA:61909 xref: NIF_GrossAnatomy:birnlex_1657 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002774 name: posterior transverse temporal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1661-FMA_61910 synonym: "posterior transverse temporal convolution of Heschl" EXACT [FMA:61910] synonym: "posterior transverse temporal convolution of heschl" EXACT [] xref: FMA:61910 xref: NIF_GrossAnatomy:birnlex_1661 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002775 name: olivocochlear bundle alt_id: UBERON:NIF_GrossAnatomy_birnlex_1666-FMA_72485 synonym: "bundle of Rasmussen" EXACT [FMA:72485] synonym: "bundle of rasmussen" EXACT [] synonym: "efferent cochlear bundle" EXACT [FMA:72485] synonym: "olivocochlear bundle of Rasmussen" EXACT [FMA:72485] synonym: "olivocochlear bundle of rasmussen" EXACT [] synonym: "olivocochlear tract" EXACT [FMA:72485] xref: FMA:72485 xref: NIF_GrossAnatomy:birnlex_1666 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002776 name: ventral nuclear group alt_id: UBERON:NIF_GrossAnatomy_birnlex_1669-FMA_62022 def: "." [Wikipedia:Ventral_nuclear_group] subset: uberon_slim synonym: "ventral nuclear group" EXACT [FMA:62022] synonym: "ventral nuclear mass" EXACT [FMA:62022] synonym: "ventral nuclei of thalamus" EXACT [FMA:62022] synonym: "ventral tier thalamic nuclei" EXACT [FMA:62022] xref: FMA:62022 xref: NIF_GrossAnatomy:birnlex_1669 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0002777 name: neostriatum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1672-FMA_77617 def: "." [Wikipedia:Neostriatum] subset: uberon_slim xref: BTO:0000418 xref: FMA:77617 xref: NIF_GrossAnatomy:birnlex_1672 is_a: UBERON:0002020 ! gray matter of neuraxis relationship: has_part UBERON:0001873 ! caudate nucleus relationship: has_part UBERON:0001874 ! putamen [Term] id: UBERON:0002778 name: ventral pallidum alt_id: UBERON:NIF_GrossAnatomy_birnlex_1674-FMA_77613 xref: FMA:77613 xref: NIF_GrossAnatomy:birnlex_1674 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002779 name: lateral superior olivary nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1675-FMA_72472 def: "." [Wikipedia:Accessory_olivary_nucleus] subset: uberon_slim synonym: "accessory olivary nucleus" EXACT [FMA:72472] synonym: "accessory superior olivary nucleus" EXACT [FMA:72472] synonym: "accessory superior olive" EXACT [FMA:72472] synonym: "lateral superior olive" EXACT [FMA:72472] synonym: "superior olivary nucleus, lateral part" EXACT [FMA:72472] xref: FMA:72472 xref: NIF_GrossAnatomy:birnlex_1675 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0002128 ! superior olivary complex [Term] id: UBERON:0002780 name: regional part of forebrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_1677-FMA_61996 synonym: "forebrain segment" EXACT [FMA:61996] synonym: "segment of forebrain" EXACT [NIF_GrossAnatomy:birnlex_1677] xref: FMA:61996 xref: NIF_GrossAnatomy:birnlex_1677 is_a: UBERON:0002616 ! regional part of brain intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0002781 name: caudal part of ventral posterolateral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1681-FMA_62206 synonym: "ventral posterior lateral nucleus (Ilinsky)" EXACT [FMA:62206] synonym: "ventral posterior lateral nucleus (ilinsky)" EXACT [] synonym: "ventral posterolateral nucleus, caudal part" EXACT [FMA:62206] synonym: "ventral posterolateral thalamic nucleus, caudal part" EXACT [FMA:62206] xref: FMA:62206 xref: NIF_GrossAnatomy:birnlex_1681 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002782 name: medial superior olivary nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1682-FMA_72473 def: "." [Wikipedia:Medial_superior_olive] subset: uberon_slim synonym: "chief nucleus of superior olive" EXACT [FMA:72473] synonym: "chief superior olivary nucleus" EXACT [FMA:72473] synonym: "main superior olivary nucleus" EXACT [FMA:72473] synonym: "medial superior olive" EXACT [FMA:72473] synonym: "principal superior olivary nucleus" EXACT [FMA:72473] synonym: "superior olivary nucleus, medial part" EXACT [FMA:72473] xref: FMA:72473 xref: NIF_GrossAnatomy:birnlex_1682 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0002128 ! superior olivary complex [Term] id: UBERON:0002783 name: central tegmental tract of pons alt_id: UBERON:NIF_GrossAnatomy_birnlex_1683-FMA_72494 xref: FMA:72494 xref: NIF_GrossAnatomy:birnlex_1683 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002784 name: regional part of diencephalon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1685-FMA_62005 synonym: "diencephalon segment" EXACT [FMA:62005] synonym: "segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685] xref: FMA:62005 xref: NIF_GrossAnatomy:birnlex_1685 is_a: UBERON:0002780 ! regional part of forebrain intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0002785 name: regional part of lateral hypothalamic region alt_id: UBERON:NIF_GrossAnatomy_birnlex_1687-FMA_62312 synonym: "lateral hypothalamic region segment" EXACT [FMA:62312] synonym: "segment of lateral hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_1687] xref: FMA:62312 xref: NIF_GrossAnatomy:birnlex_1687 is_a: UBERON:0003048 ! regional part of hypothalamus [Term] id: UBERON:0002786 name: abducens nerve fibers alt_id: UBERON:NIF_GrossAnatomy_birnlex_1689-FMA_72491 synonym: "abducens nerve fibers" EXACT [FMA:72491] synonym: "central part of abducens nerve" EXACT [FMA:72491] synonym: "root of abducens nerve" EXACT [FMA:72491] xref: FMA:72491 xref: NIF_GrossAnatomy:birnlex_1689 is_a: UBERON:0002211 ! segment of nerve [Term] id: UBERON:0002787 name: decussation of trochlear nerve alt_id: UBERON:NIF_GrossAnatomy_birnlex_1690-FMA_72488 synonym: "decussation of trochlear nerve (IV)" EXACT [FMA:72488] synonym: "decussation of trochlear nerve (iv)" EXACT [] synonym: "trochlear neural decussation" EXACT [FMA:72488] xref: FMA:72488 xref: NIF_GrossAnatomy:birnlex_1690 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002788 name: anterior nuclear group alt_id: UBERON:NIF_GrossAnatomy_birnlex_1692-FMA_62019 def: "." [Wikipedia:Anterior_nuclear_group] subset: uberon_slim synonym: "anterior nuclear group" EXACT [FMA:62019] synonym: "anterior nuclei of thalamus" EXACT [FMA:62019] synonym: "anterior nucleus of thalamus" EXACT [FMA:62019] synonym: "anterior thalamic nuclei" EXACT [FMA:62019] xref: FMA:62019 xref: NIF_GrossAnatomy:birnlex_1692 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0002789 name: regional part of posterior hypothalamic region alt_id: UBERON:NIF_GrossAnatomy_birnlex_1697-FMA_62311 synonym: "posterior hypothalamic region segment" EXACT [FMA:62311] synonym: "segment of posterior hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_1697] xref: FMA:62311 xref: NIF_GrossAnatomy:birnlex_1697 is_a: UBERON:0003048 ! regional part of hypothalamus intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002770 ! posterior hypothalamic region [Term] id: UBERON:0002790 name: dorsal acoustic stria alt_id: UBERON:NIF_GrossAnatomy_birnlex_1698-FMA_72496 synonym: "posterior acoustic stria" EXACT [FMA:72496] xref: FMA:72496 xref: NIF_GrossAnatomy:birnlex_1698 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002791 name: regional part of telencephalon alt_id: UBERON:NIF_GrossAnatomy_birnlex_1700-FMA_62374 synonym: "segment of telencephalon" EXACT [NIF_GrossAnatomy:birnlex_1700] synonym: "telencephalon segment" EXACT [FMA:62374] xref: FMA:62374 xref: NIF_GrossAnatomy:birnlex_1700 is_a: UBERON:0002780 ! regional part of forebrain intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0002792 name: lumbar spinal cord alt_id: UBERON:NIF_GrossAnatomy_birnlex_1704-FMA_71168 def: "." [Wikipedia:Lumbar_spinal_cord] subset: uberon_slim synonym: "lumbar segments of spinal cord [1-5]" EXACT [FMA:71168] synonym: "lumbar spinal cord" EXACT [FMA:71168] xref: FMA:71168 xref: ncithesaurus:Lumbar_Spinal_Cord xref: NIF_GrossAnatomy:birnlex_1704 is_a: UBERON:0001948 ! regional part of spinal cord [Term] id: UBERON:0002793 name: dorsal longitudinal fasciculus of pons alt_id: UBERON:NIF_GrossAnatomy_birnlex_1707-FMA_72492 xref: FMA:72492 xref: NIF_GrossAnatomy:birnlex_1707 is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon is_a: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002794 name: medial longitudinal fasciculus of pons alt_id: UBERON:NIF_GrossAnatomy_birnlex_1708-FMA_72493 xref: FMA:72493 xref: NIF_GrossAnatomy:birnlex_1708 is_a: UBERON:0002309 ! medial longitudinal fasciculus is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon intersection_of: UBERON:0002309 ! medial longitudinal fasciculus intersection_of: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002795 name: frontal pole alt_id: UBERON:NIF_GrossAnatomy_birnlex_1716-FMA_74885 def: "." [Wikipedia:Frontal_pole] subset: uberon_slim xref: FMA:74885 xref: NIF_GrossAnatomy:birnlex_1716 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002796 name: motor root of trigeminal nerve alt_id: UBERON:NIF_GrossAnatomy_birnlex_1717-FMA_52612 synonym: "motor branch of trigeminal nerve" EXACT [FMA:52612] synonym: "motor root of Nervus V" EXACT [FMA:52612] synonym: "motor root of nervus v" EXACT [] synonym: "radix motoria (Nervus trigeminus [V])" EXACT [FMA:52612] synonym: "radix motoria (nervus trigeminus [v])" EXACT [] xref: FMA:52612 xref: NIF_GrossAnatomy:birnlex_1717 is_a: UBERON:0002211 ! segment of nerve [Term] id: UBERON:0002797 name: dorsal trigeminal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_1718-FMA_72500 def: "." [Wikipedia:Dorsal_trigeminal_tract] subset: uberon_slim synonym: "dorsal ascending trigeminal tract" EXACT [FMA:72500] synonym: "dorsal division of trigeminal lemniscus" EXACT [FMA:72500] synonym: "dorsal secondary ascending tract of V" EXACT [FMA:72500] synonym: "dorsal secondary ascending tract of v" EXACT [] synonym: "dorsal secondary tract of V" EXACT [FMA:72500] synonym: "dorsal secondary tract of v" EXACT [] synonym: "dorsal trigeminal lemniscus" EXACT [FMA:72500] synonym: "dorsal trigeminal pathway" EXACT [FMA:72500] synonym: "dorsal trigeminothalamic tract" EXACT [FMA:72500] synonym: "posterior trigeminothalamic tract" EXACT [FMA:72500] synonym: "reticulothalamic tract" EXACT [FMA:72500] synonym: "uncrossed dorsal trigeminothalamic tract" EXACT [FMA:72500] xref: FMA:72500 xref: NIF_GrossAnatomy:birnlex_1718 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002798 name: spinothalamic tract of pons alt_id: UBERON:NIF_GrossAnatomy_birnlex_1719-FMA_72504 xref: FMA:72504 xref: NIF_GrossAnatomy:birnlex_1719 is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon is_a: UBERON:0002944 ! spinothalamic tract of medulla intersection_of: UBERON:0002944 ! spinothalamic tract of medulla intersection_of: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002799 name: fronto-orbital sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1724-FMA_83768 synonym: "fronto-orbital dimple" EXACT [FMA:83768] synonym: "orbito-frontal sulcus" EXACT [FMA:83768] xref: FMA:83768 xref: NIF_GrossAnatomy:birnlex_1724 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002800 name: spinal trigeminal tract of pons alt_id: UBERON:NIF_GrossAnatomy_birnlex_1725-FMA_72507 xref: FMA:72507 xref: NIF_GrossAnatomy:birnlex_1725 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002801 name: stratum zonale of thalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_1727-FMA_83905 synonym: "neuraxis stratum" EXACT [FMA:83905] xref: FMA:83905 xref: NIF_GrossAnatomy:birnlex_1727 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002802 name: left parietal lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1728-FMA_72974 xref: FMA:72974 xref: NIF_GrossAnatomy:birnlex_1728 is_a: UBERON:0001872 ! parietal lobe relationship: adjacent_to UBERON:0002921 ! longitudinal fissure relationship: disconnected_from UBERON:0002803 ! right parietal lobe [Term] id: UBERON:0002803 name: right parietal lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1729-FMA_72973 xref: FMA:72973 xref: NIF_GrossAnatomy:birnlex_1729 is_a: UBERON:0001872 ! parietal lobe relationship: adjacent_to UBERON:0002921 ! longitudinal fissure [Term] id: UBERON:0002804 name: left limbic lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1780-FMA_72981 xref: FMA:72981 xref: NIF_GrossAnatomy:birnlex_1780 is_a: UBERON:0002600 ! limbic lobe [Term] id: UBERON:0002805 name: right limbic lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1781-FMA_72980 xref: FMA:72980 xref: NIF_GrossAnatomy:birnlex_1781 is_a: UBERON:0002600 ! limbic lobe [Term] id: UBERON:0002806 name: left occipital lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1782-FMA_72976 xref: FMA:72976 xref: NIF_GrossAnatomy:birnlex_1782 is_a: UBERON:0002021 ! occipital lobe relationship: adjacent_to UBERON:0002921 ! longitudinal fissure relationship: disconnected_from UBERON:0002807 ! right occipital lobe [Term] id: UBERON:0002807 name: right occipital lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1783-FMA_72975 xref: FMA:72975 xref: NIF_GrossAnatomy:birnlex_1783 is_a: UBERON:0002021 ! occipital lobe relationship: adjacent_to UBERON:0002921 ! longitudinal fissure [Term] id: UBERON:0002808 name: left temporal lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1784-FMA_72972 xref: FMA:72972 xref: NIF_GrossAnatomy:birnlex_1784 is_a: UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002809 name: right temporal lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1785-FMA_72971 xref: FMA:72971 xref: NIF_GrossAnatomy:birnlex_1785 is_a: UBERON:0001871 ! temporal lobe [Term] id: UBERON:0002810 name: right frontal lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1786-FMA_72969 xref: FMA:72969 xref: NIF_GrossAnatomy:birnlex_1786 is_a: UBERON:0001870 ! frontal lobe relationship: adjacent_to UBERON:0002921 ! longitudinal fissure [Term] id: UBERON:0002811 name: left frontal lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_1787-FMA_72970 xref: FMA:72970 xref: NIF_GrossAnatomy:birnlex_1787 is_a: UBERON:0001870 ! frontal lobe relationship: adjacent_to UBERON:0002921 ! longitudinal fissure relationship: disconnected_from UBERON:0002810 ! right frontal lobe [Term] id: UBERON:0002812 name: left cerebral hemisphere alt_id: UBERON:NIF_GrossAnatomy_birnlex_1795-FMA_61819 xref: FMA:61819 xref: ncithesaurus:Left_Cerebral_Hemisphere xref: NIF_GrossAnatomy:birnlex_1795 is_a: UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0002813 name: right cerebral hemisphere alt_id: UBERON:NIF_GrossAnatomy_birnlex_1797-FMA_67292 xref: FMA:67292 xref: ncithesaurus:Right_Cerebral_Hemisphere xref: NIF_GrossAnatomy:birnlex_1797 is_a: UBERON:0001869 ! cerebral hemisphere [Term] id: UBERON:0002814 name: posterior superior fissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081254-FMA_83733 synonym: "post-clival fissure" EXACT [FMA:83733] synonym: "postclival fissure" EXACT [FMA:83733] synonym: "Posterior superior fissure" EXACT [FMA:83733, NIF_GrossAnatomy:birnlex_20081254] synonym: "postlunate fissure" EXACT [FMA:83733] xref: FMA:83733 xref: NIF_GrossAnatomy:birnlex_20081254 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002815 name: horizontal fissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081255-FMA_14697 def: "." [Wikipedia:Horizontal_fissure_of_cerebellum] synonym: "Horizontal fissure" EXACT [NIF_GrossAnatomy:birnlex_20081255] synonym: "Horizontal fissure of cerebellum" EXACT [Wikipedia:Horizontal_fissure_of_cerebellum] synonym: "horizontal fissure of cerebellum" EXACT [] synonym: "Horizontal sulcus" EXACT [Wikipedia:Horizontal_fissure_of_cerebellum] synonym: "horizontal sulcus" EXACT [] xref: FMA:14697 xref: FMA:75135 xref: NIF_GrossAnatomy:birnlex_20081255 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002816 name: prepyramidal fissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081257-FMA_75138 synonym: "prebiventral fissure of cerebellum" EXACT [FMA:75138] synonym: "Prepyramidal fissure" EXACT [NIF_GrossAnatomy:birnlex_20081257] synonym: "prepyramidal sulcus" EXACT [FMA:75138] xref: FMA:75138 xref: NIF_GrossAnatomy:birnlex_20081257 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002817 name: secondary fissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081258-FMA_84043 synonym: "post-pyramidal fissure of cerebellum" EXACT [FMA:84043] synonym: "postpyramidal fissure" EXACT [FMA:84043] synonym: "Secondary fissure" EXACT [NIF_GrossAnatomy:birnlex_20081258] synonym: "secondary fissure" EXACT [FMA:84043] xref: FMA:84043 xref: NIF_GrossAnatomy:birnlex_20081258 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002818 name: posterolateral fissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_20081259-FMA_83730 synonym: "dorsolateral fissure of cerebellum" EXACT [FMA:83730] synonym: "Posterolateral fissure" EXACT [NIF_GrossAnatomy:birnlex_20081259] synonym: "prenodular fissure" EXACT [FMA:83730] synonym: "prenodular sulcus" EXACT [FMA:83730] synonym: "uvulonodular fissure" EXACT [FMA:83730] xref: FMA:83730 xref: NIF_GrossAnatomy:birnlex_20081259 is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002819 name: apex of cochlea alt_id: UBERON:NIF_GrossAnatomy_birnlex_2523-FMA_75641 def: "." [Wikipedia:Apex_of_cochlea] subset: uberon_slim synonym: "cochlea apex" EXACT [FMA:75641] synonym: "cupula of cochlea" EXACT [FMA:75641] xref: FMA:75641 xref: NIF_GrossAnatomy:birnlex_2523 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002820 name: zona arcuata of basilar membrane of cochlea alt_id: UBERON:NIF_GrossAnatomy_birnlex_2528-FMA_75709 xref: FMA:75709 xref: NIF_GrossAnatomy:birnlex_2528 is_a: UBERON:0000476 ! acellular anatomical structure [Term] id: UBERON:0002821 name: zona arcuata of basilar membrane of cochlea alt_id: UBERON:NIF_GrossAnatomy_birnlex_2529-FMA_75709 xref: FMA:75709 xref: NIF_GrossAnatomy:birnlex_2529 is_a: UBERON:0000476 ! acellular anatomical structure [Term] id: UBERON:0002822 name: macula lutea proper alt_id: UBERON:NIF_GrossAnatomy_birnlex_2542-FMA_58671 xref: FMA:58671 xref: NIF_GrossAnatomy:birnlex_2542 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0000053 ! macula lutea [Term] id: UBERON:0002823 name: clivus of fovea centralis alt_id: UBERON:NIF_GrossAnatomy_birnlex_2544-FMA_58674 comment: NIF differs from FMA synonym: "fovea centralis clivus" EXACT [FMA:58674] xref: FMA:58674 xref: NIF_GrossAnatomy:birnlex_2544 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001786 ! fovea centralis [Term] id: UBERON:0002824 name: vestibular ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2549-FMA_53435 def: "." [Wikipedia:Vestibular_ganglion] subset: uberon_slim synonym: "scarpa's ganglion" EXACT [FMA:53435] xref: FMA:53435 xref: ncithesaurus:Vestibular_Ganglion xref: NIF_GrossAnatomy:birnlex_2549 is_a: UBERON:0001714 ! ganglion of cranial nerve [Term] id: UBERON:0002825 name: superior part of vestibular ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2551-FMA_77531 xref: FMA:77531 xref: NIF_GrossAnatomy:birnlex_2551 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002826 name: inferior part of vestibular ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2552-FMA_77532 xref: FMA:77532 xref: NIF_GrossAnatomy:birnlex_2552 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002827 name: auditory ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2564-ZFA_0000588 synonym: "auditory ganglion" EXACT [ZFA:0000588] synonym: "gVIII" EXACT [ZFA:0000588] synonym: "gviii" EXACT [] synonym: "sag" EXACT [ZFA:0000588] synonym: "statoacoustic ganglia" EXACT [ZFA:0000588] xref: NIF_GrossAnatomy:birnlex_2564 xref: ZFA:0000588 is_a: UBERON:0002420 ! basal ganglia relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0002828 name: ventral cochlear nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2567-FMA_54621 def: "." [Wikipedia:Ventral_cochlear_nucleus] subset: uberon_slim synonym: "ventral cochlear nucleus" EXACT [FMA:54621] xref: FMA:54621 xref: NIF_GrossAnatomy:birnlex_2567 is_a: UBERON:0001720 ! cochlear nucleus [Term] id: UBERON:0002829 name: dorsal cochlear nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2569-FMA_54624 def: "." [Wikipedia:Dorsal_cochlear_nucleus] subset: uberon_slim synonym: "dorsal cochlear nucleus" EXACT [FMA:54624] synonym: "dorsal division of cochlear nucleus" EXACT [FMA:54624] xref: FMA:54624 xref: ncithesaurus:Dorsal_Cochlear_Nucleus xref: NIF_GrossAnatomy:birnlex_2569 is_a: UBERON:0001720 ! cochlear nucleus [Term] id: UBERON:0002830 name: anteroventral cochlear nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2572-FMA_72571 synonym: "anteroventral auditory nucleus" EXACT [FMA:72571] xref: FMA:72571 xref: NIF_GrossAnatomy:birnlex_2572 is_a: UBERON:0001720 ! cochlear nucleus [Term] id: UBERON:0002831 name: posteroventral cochlear nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2573-FMA_72572 xref: FMA:72572 xref: NIF_GrossAnatomy:birnlex_2573 is_a: UBERON:0001720 ! cochlear nucleus [Term] id: UBERON:0002832 name: ventral nucleus of trapezoid body alt_id: UBERON:NIF_GrossAnatomy_birnlex_2576-FMA_72477 synonym: "anterior nucleus of trapezoid body" EXACT [FMA:72477] xref: FMA:72477 xref: NIF_GrossAnatomy:birnlex_2576 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0002128 ! superior olivary complex [Term] id: UBERON:0002833 name: medial nucleus of trapezoid body alt_id: UBERON:NIF_GrossAnatomy_birnlex_2595-FMA_75732 xref: FMA:75732 xref: NIF_GrossAnatomy:birnlex_2595 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002834 name: cervical dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2599-FMA_6005 synonym: "cervical dorsal root ganglion" EXACT [FMA:6005] xref: FMA:6005 xref: NIF_GrossAnatomy:birnlex_2599 is_a: UBERON:0000044 ! dorsal root ganglion [Term] id: UBERON:0002835 name: thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2600-FMA_6006 synonym: "thoracic dorsal root ganglion" EXACT [FMA:6006] xref: FMA:6006 xref: NIF_GrossAnatomy:birnlex_2600 is_a: UBERON:0000044 ! dorsal root ganglion is_a: UBERON:0000961 ! thoracic ganglion intersection_of: UBERON:0000044 ! dorsal root ganglion intersection_of: part_of UBERON:0000915 ! thorax [Term] id: UBERON:0002836 name: lumbar dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2601-FMA_6007 synonym: "lumbar dorsal root ganglion" EXACT [FMA:6007] xref: FMA:6007 xref: NIF_GrossAnatomy:birnlex_2601 is_a: UBERON:0000044 ! dorsal root ganglion [Term] id: UBERON:0002837 name: sacral dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2602-FMA_6008 synonym: "sacral dorsal root ganglion" EXACT [FMA:6008] xref: FMA:6008 xref: NIF_GrossAnatomy:birnlex_2602 is_a: UBERON:0000044 ! dorsal root ganglion [Term] id: UBERON:0002838 name: first cervical dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2603-FMA_6010 synonym: "first cervical dorsal root ganglion" EXACT [FMA:6010] xref: FMA:6010 xref: NIF_GrossAnatomy:birnlex_2603 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002839 name: second cervical dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2604-FMA_6315 synonym: "second cervical dorsal root ganglion" EXACT [FMA:6315] xref: FMA:6315 xref: NIF_GrossAnatomy:birnlex_2604 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002840 name: third cervical dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2605-FMA_6316 synonym: "third cervical dorsal root ganglion" EXACT [FMA:6316] xref: FMA:6316 xref: NIF_GrossAnatomy:birnlex_2605 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002841 name: fourth cervical dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2606-FMA_6317 synonym: "fourth cervical dorsal root ganglion" EXACT [FMA:6317] xref: FMA:6317 xref: NIF_GrossAnatomy:birnlex_2606 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002842 name: fifth cervical dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2607-FMA_6318 synonym: "fifth cervical dorsal root ganglion" EXACT [FMA:6318] xref: FMA:6318 xref: NIF_GrossAnatomy:birnlex_2607 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002843 name: seventh cervical dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2609-FMA_6360 synonym: "seventh cervical dorsal root ganglion" EXACT [FMA:6360] xref: FMA:6360 xref: NIF_GrossAnatomy:birnlex_2609 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002844 name: eighth cervical dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2610-FMA_6361 synonym: "eighth cervical dorsal root ganglion" EXACT [FMA:6361] xref: FMA:6361 xref: NIF_GrossAnatomy:birnlex_2610 is_a: UBERON:0002834 ! cervical dorsal root ganglion [Term] id: UBERON:0002845 name: first thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2611-FMA_6321 synonym: "first thoracic dorsal root ganglion" EXACT [FMA:6321] xref: FMA:6321 xref: NIF_GrossAnatomy:birnlex_2611 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002846 name: second thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2612-FMA_6322 synonym: "second thoracic dorsal root ganglion" EXACT [FMA:6322] xref: FMA:6322 xref: NIF_GrossAnatomy:birnlex_2612 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002847 name: third thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2613-FMA_6323 synonym: "third thoracic dorsal root ganglion" EXACT [FMA:6323] xref: FMA:6323 xref: NIF_GrossAnatomy:birnlex_2613 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002848 name: fifth thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2615-FMA_6325 synonym: "fifth thoracic dorsal root ganglion" EXACT [FMA:6325] xref: FMA:6325 xref: NIF_GrossAnatomy:birnlex_2615 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002849 name: sixth thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2616-FMA_6326 synonym: "sixth thoracic dorsal root ganglion" EXACT [FMA:6326] xref: FMA:6326 xref: NIF_GrossAnatomy:birnlex_2616 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002850 name: seventh thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2617-FMA_6327 synonym: "seventh thoracic dorsal root ganglion" EXACT [FMA:6327] xref: FMA:6327 xref: NIF_GrossAnatomy:birnlex_2617 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002851 name: eighth thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2618-FMA_6328 synonym: "eighth thoracic dorsal root ganglion" EXACT [FMA:6328] xref: FMA:6328 xref: NIF_GrossAnatomy:birnlex_2618 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002852 name: ninth thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2619-FMA_6329 synonym: "ninth thoracic dorsal root ganglion" EXACT [FMA:6329] xref: FMA:6329 xref: NIF_GrossAnatomy:birnlex_2619 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002853 name: tenth thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2620-FMA_6330 synonym: "tenth thoracic dorsal root ganglion" EXACT [FMA:6330] xref: FMA:6330 xref: NIF_GrossAnatomy:birnlex_2620 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002854 name: eleventh thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2621-FMA_6331 synonym: "eleventh thoracic dorsal root ganglion" EXACT [FMA:6331] xref: FMA:6331 xref: NIF_GrossAnatomy:birnlex_2621 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002855 name: twelfth thoracic dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2622-FMA_6332 synonym: "twelfth thoracic dorsal root ganglion" EXACT [FMA:6332] xref: FMA:6332 xref: NIF_GrossAnatomy:birnlex_2622 is_a: UBERON:0002835 ! thoracic dorsal root ganglion [Term] id: UBERON:0002856 name: second lumbar dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2623-FMA_6336 synonym: "second lumbar dorsal root ganglion" EXACT [FMA:6336] xref: FMA:6336 xref: NIF_GrossAnatomy:birnlex_2623 is_a: UBERON:0002836 ! lumbar dorsal root ganglion [Term] id: UBERON:0002857 name: first lumbar dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2624-FMA_6335 synonym: "first lumbar dorsal root ganglion" EXACT [FMA:6335] xref: FMA:6335 xref: NIF_GrossAnatomy:birnlex_2624 is_a: UBERON:0002836 ! lumbar dorsal root ganglion [Term] id: UBERON:0002858 name: third lumbar dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2625-FMA_6337 synonym: "third lumbar dorsal root ganglion" EXACT [FMA:6337] xref: FMA:6337 xref: NIF_GrossAnatomy:birnlex_2625 is_a: UBERON:0002836 ! lumbar dorsal root ganglion [Term] id: UBERON:0002859 name: fifth lumbar dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2627-FMA_6339 synonym: "fifth lumbar dorsal root ganglion" EXACT [FMA:6339] xref: FMA:6339 xref: NIF_GrossAnatomy:birnlex_2627 is_a: UBERON:0002836 ! lumbar dorsal root ganglion [Term] id: UBERON:0002860 name: first sacral dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2628-FMA_6342 synonym: "first sacral dorsal root ganglion" EXACT [FMA:6342] xref: FMA:6342 xref: NIF_GrossAnatomy:birnlex_2628 is_a: UBERON:0002837 ! sacral dorsal root ganglion [Term] id: UBERON:0002861 name: second sacral dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2629-FMA_6343 synonym: "second sacral dorsal root ganglion" EXACT [FMA:6343] xref: FMA:6343 xref: NIF_GrossAnatomy:birnlex_2629 is_a: UBERON:0002837 ! sacral dorsal root ganglion [Term] id: UBERON:0002862 name: third sacral dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2630-FMA_6344 synonym: "third sacral dorsal root ganglion" EXACT [FMA:6344] xref: FMA:6344 xref: NIF_GrossAnatomy:birnlex_2630 is_a: UBERON:0002837 ! sacral dorsal root ganglion [Term] id: UBERON:0002863 name: fifth sacral dorsal root ganglion alt_id: UBERON:NIF_GrossAnatomy_birnlex_2632-FMA_6346 synonym: "fifth sacral dorsal root ganglion" EXACT [FMA:6346] xref: FMA:6346 xref: NIF_GrossAnatomy:birnlex_2632 is_a: UBERON:0002837 ! sacral dorsal root ganglion [Term] id: UBERON:0002864 name: accessory cuneate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2634-FMA_72603 def: "." [Wikipedia:Accessory_cuneate_nucleus] subset: uberon_slim synonym: "external cuneate nucleus" EXACT [FMA:72603] synonym: "lateral cuneate nucleus" EXACT [FMA:72603] synonym: "nucleus of corpus restiforme" EXACT [FMA:72603] xref: FMA:72603 xref: NIF_GrossAnatomy:birnlex_2634 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002865 name: arcuate nucleus of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_2635-FMA_72609 synonym: "arcuate nucleus-1" EXACT [FMA:72609] synonym: "medial arcuate nucleus" EXACT [FMA:72609] xref: FMA:72609 xref: NIF_GrossAnatomy:birnlex_2635 is_a: UBERON:0001932 ! implied link automatically realized ! arcuate nucleus of hypothalamus is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002878 ! implied link automatically realized ! nucleus intercalatus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter intersection_of: UBERON:0001932 ! arcuate nucleus of hypothalamus intersection_of: part_of UBERON:0000958 ! medulla [Term] id: UBERON:0002866 name: caudal part of spinal trigeminal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2637-FMA_72606 synonym: "caudal nucleus (Kandell)" EXACT [FMA:72606] synonym: "caudal nucleus (kandell)" EXACT [] synonym: "spinal trigeminal nucleus, caudal part" EXACT [FMA:72606] xref: FMA:72606 xref: NIF_GrossAnatomy:birnlex_2637 is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve [Term] id: UBERON:0002867 name: central gray substance of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_2638-FMA_72595 synonym: "medullary central gray substance" EXACT [FMA:72595] xref: FMA:72595 xref: NIF_GrossAnatomy:birnlex_2638 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002868 name: commissural nucleus of vagus nerve alt_id: UBERON:NIF_GrossAnatomy_birnlex_2639-FMA_54597 synonym: "commissural nucleus-1" EXACT [FMA:54597] synonym: "nucleus of inferior commissure" EXACT [FMA:54597] xref: FMA:54597 xref: NIF_GrossAnatomy:birnlex_2639 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002869 name: diffuse reticular nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2641-FMA_72598 synonym: "nucleus of Kolliker-Fuse" EXACT [FMA:72598] synonym: "nucleus of kolliker-fuse" EXACT [] xref: FMA:72598 xref: NIF_GrossAnatomy:birnlex_2641 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002870 name: dorsal motor nucleus of vagus nerve alt_id: UBERON:NIF_GrossAnatomy_birnlex_2642-FMA_54592 def: "." [Wikipedia:Dorsal_motor_nucleus_of_vagus_nerve] subset: uberon_slim synonym: "dorsal efferent nucleus of vagus" EXACT [FMA:54592] xref: FMA:54592 xref: NIF_GrossAnatomy:birnlex_2642 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002871 name: hypoglossal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2644-FMA_54505 def: "." [Wikipedia:Hypoglossal_nucleus] subset: uberon_slim synonym: "hypoglossal nucleus" EXACT [FMA:54505] synonym: "nucleus of hypoglossal nerve" EXACT [FMA:54505] synonym: "twelfth cranial nerve nucleus" EXACT [FMA:54505] xref: FMA:54505 xref: NIF_GrossAnatomy:birnlex_2644 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002872 name: inferior salivatory nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2645-FMA_72601 def: "." [Wikipedia:Inferior_salivatory_nucleus] subset: uberon_slim synonym: "inferior salivary nucleus" EXACT [] xref: FMA:72601 xref: NIF_GrossAnatomy:birnlex_2645 is_a: UBERON:0000126 ! implied link automatically realized ! cranial nerve nucleus is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001649 ! glossopharyngeal nerve [Term] id: UBERON:0002873 name: interpolar part of spinal trigeminal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2646-FMA_235324 xref: FMA:235324 xref: NIF_GrossAnatomy:birnlex_2646 is_a: UBERON:0002020 ! gray matter of neuraxis relationship: part_of UBERON:0001717 ! spinal nucleus of trigeminal nerve [Term] id: UBERON:0002874 name: lateral pericuneate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2647-FMA_72604 xref: FMA:72604 xref: NIF_GrossAnatomy:birnlex_2647 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002875 name: medial pericuneate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2648-FMA_72605 xref: FMA:72605 xref: NIF_GrossAnatomy:birnlex_2648 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002876 name: nucleus intercalatus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2651-FMA_72597 synonym: "intercalated nucleus of medulla" EXACT [FMA:72597] synonym: "nucleus intercalatus of medulla" EXACT [FMA:72597] synonym: "nucleus of Staderini" EXACT [FMA:72597] synonym: "nucleus of staderini" EXACT [] xref: FMA:72597 xref: NIF_GrossAnatomy:birnlex_2651 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002877 name: parasolitary nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2653-FMA_77091 xref: FMA:77091 xref: NIF_GrossAnatomy:birnlex_2653 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002878 name: nucleus intercalatus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2654-FMA_72597 synonym: "intercalated nucleus of medulla" EXACT [FMA:72597] synonym: "nucleus intercalatus of medulla" EXACT [FMA:72597] synonym: "nucleus of Staderini" EXACT [FMA:72597] synonym: "nucleus of staderini" EXACT [] xref: FMA:72597 xref: NIF_GrossAnatomy:birnlex_2654 is_a: UBERON:0002308 ! nucleus of brain intersection_of: UBERON:0002308 ! nucleus of brain intersection_of: part_of UBERON:0000958 ! medulla [Term] id: UBERON:0002879 name: peritrigeminal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2655-FMA_72600 xref: FMA:72600 xref: NIF_GrossAnatomy:birnlex_2655 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002880 name: pontobulbar nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2656-FMA_72608 synonym: "nucleus of circumolivary bundle" EXACT [FMA:72608] synonym: "pontobulbar body" EXACT [FMA:72608] xref: FMA:72608 xref: NIF_GrossAnatomy:birnlex_2656 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002881 name: sublingual nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2657-FMA_68574 def: "." [Wikipedia:Sublingual_nucleus] subset: uberon_slim synonym: "nucleus of Roller" EXACT [FMA:68574] synonym: "nucleus of roller" EXACT [] xref: FMA:68574 xref: NIF_GrossAnatomy:birnlex_2657 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002882 name: supraspinal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2658-FMA_74507 xref: FMA:74507 xref: NIF_GrossAnatomy:birnlex_2658 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002883 name: central amygdaloid nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2682-FMA_74047 synonym: "central nucleus of amygdala" EXACT [FMA:74047] xref: BTO:0002686 xref: FMA:74047 xref: NIF_GrossAnatomy:birnlex_2682 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002884 name: intercalated amygdaloid nuclei alt_id: UBERON:NIF_GrossAnatomy_birnlex_2683-FMA_61868 synonym: "intercalated amygdaloid nuclei" EXACT [FMA:61868] synonym: "intercalated masses of nucleus amygdaloideus" EXACT [FMA:61868] synonym: "intercalated nuclei of amygdala" EXACT [FMA:61868] xref: FMA:61868 xref: NIF_GrossAnatomy:birnlex_2683 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002885 name: accessory basal amygdaloid nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2686-FMA_61867 xref: FMA:61867 xref: NIF_GrossAnatomy:birnlex_2686 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002886 name: lateral amygdaloid nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2687-FMA_61866 synonym: "lateral nucleus of amygdala" EXACT [FMA:61866] synonym: "lateral principal nucleus of amygdala" EXACT [FMA:61866] xref: BTO:0002704 xref: FMA:61866 xref: NIF_GrossAnatomy:birnlex_2687 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002887 name: basal amygdaloid nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2692-FMA_68855 synonym: "basolateral amygdaloid nucleus" EXACT [FMA:68855] synonym: "basolateral nucleus (De Olmos)" EXACT [FMA:68855] synonym: "basolateral nucleus (de olmos)" EXACT [] synonym: "intermediate principal nucleus" EXACT [FMA:68855] xref: FMA:68855 xref: NIF_GrossAnatomy:birnlex_2692 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002888 name: lateral part of basal amygdaloid nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2695-FMA_68857 synonym: "lateral basal nucleus of the amygdala" EXACT [FMA:68857] synonym: "lateral division of the basal nucleus" EXACT [FMA:68857] xref: FMA:68857 xref: NIF_GrossAnatomy:birnlex_2695 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002889 name: medial part of basal amygdaloid nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2696-FMA_68858 synonym: "basomedial amygdaloid nucleus" EXACT [FMA:68858] synonym: "medial basal nucleus of amygdala" EXACT [FMA:68858] synonym: "medial division of basal nucleus" EXACT [FMA:68858] xref: FMA:68858 xref: NIF_GrossAnatomy:birnlex_2696 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002890 name: anterior amygdaloid area alt_id: UBERON:NIF_GrossAnatomy_birnlex_2698-FMA_61861 xref: FMA:61861 xref: NIF_GrossAnatomy:birnlex_2698 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002891 name: cortical amygdaloid nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2700-FMA_61862 synonym: "posterior cortical nucleus of amygdala" EXACT [FMA:61862] xref: BTO:0002703 xref: FMA:61862 xref: NIF_GrossAnatomy:birnlex_2700 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002892 name: medial amygdaloid nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_2701-FMA_74046 synonym: "medial nucleus of amygdala" EXACT [FMA:74046] xref: BTO:0002702 xref: FMA:74046 xref: NIF_GrossAnatomy:birnlex_2701 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002893 name: nucleus of lateral olfactory tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_2702-FMA_61865 synonym: "lateral olfactory tract nucleus" EXACT [FMA:61865] xref: FMA:61865 xref: NIF_GrossAnatomy:birnlex_2702 is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon relationship: part_of UBERON:0001876 ! amygdala [Term] id: UBERON:0002894 name: olfactory cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_2707-MA_0000193 def: "The olfactory cortex is involved in the perception of smell. It receives input from the olfactory bulb and is responsible for the identification of odors[GO]." [Wikipedia:Olfactory_cortex] subset: uberon_slim synonym: "olfactory lobe" RELATED [MA:0000193] xref: BTO:0001446 xref: EHDAA:5482 xref: HOG:0000325 xref: MA:0000193 xref: NIF_GrossAnatomy:birnlex_2707 is_a: UBERON:0002616 ! regional part of brain [Term] id: UBERON:0002895 name: secondary olfactory cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_2709-FMA_72356 def: "." [Wikipedia:Entorhinal_cortex] subset: uberon_slim synonym: "area 28 of Brodmann (Crosby)" EXACT [FMA:72356] synonym: "area 28 of brodmann (crosby)" EXACT [] synonym: "entorhinal cortex" EXACT [FMA:72356] synonym: "secondary olfactory cortex" EXACT [FMA:72356] synonym: "secondary olfactory cortical area (Carpenter)" EXACT [FMA:72356] synonym: "secondary olfactory cortical area (carpenter)" EXACT [] xref: EFO:0001920 xref: FMA:72356 xref: NIF_GrossAnatomy:birnlex_2709 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002896 name: telodiencephalic fissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_4001-FMA_83726 synonym: "telo-diencephalic fissure" EXACT [FMA:83726] xref: FMA:83726 xref: NIF_GrossAnatomy:birnlex_4001 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002897 name: cistern of lamina terminalis alt_id: UBERON:NIF_GrossAnatomy_birnlex_4002-FMA_74516 synonym: "lamina terminalis cistern" EXACT [FMA:74516] xref: FMA:74516 xref: ncithesaurus:Lamina_Terminalis_Cistern xref: NIF_GrossAnatomy:birnlex_4002 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002898 name: chiasmatic cistern alt_id: UBERON:NIF_GrossAnatomy_birnlex_4003-FMA_74515 def: "." [Wikipedia:Chiasmatic_cistern] subset: uberon_slim xref: FMA:74515 xref: ncithesaurus:Chiasmatic_Cistern xref: NIF_GrossAnatomy:birnlex_4003 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002899 name: hippocampal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4004-FMA_83747 def: "." [Wikipedia:Hippocampal_sulcus] subset: uberon_slim synonym: "dentate fissure" EXACT [FMA:83747] synonym: "hippocampal fissure" EXACT [FMA:83747] xref: FMA:83747 xref: ncithesaurus:Hippocampal_Fissure xref: NIF_GrossAnatomy:birnlex_4004 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002900 name: transverse occipital sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4013-FMA_83786 xref: BTO:0003786 xref: FMA:83786 xref: NIF_GrossAnatomy:birnlex_4013 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002901 name: posterior calcarine sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4015-FMA_83787 synonym: "postcalcarine sulcus" EXACT [FMA:83787] synonym: "posterior calcarine fissure" EXACT [FMA:83787] synonym: "posterior part of calcarine sulcus" EXACT [FMA:83787] xref: FMA:83787 xref: NIF_GrossAnatomy:birnlex_4015 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002902 name: occipital pole alt_id: UBERON:NIF_GrossAnatomy_birnlex_4016-FMA_74892 def: "." [Wikipedia:Occipital_pole] subset: uberon_slim xref: BTO:0001868 xref: FMA:74892 xref: NIF_GrossAnatomy:birnlex_4016 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002903 name: lunate sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4017-FMA_83788 synonym: "lunate fissure" EXACT [FMA:83788] xref: FMA:83788 xref: ncithesaurus:Lunate_Sulcus xref: NIF_GrossAnatomy:birnlex_4017 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002904 name: lateral occipital sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4018-FMA_83785 def: "." [Wikipedia:Lateral_occipital_sulcus] subset: uberon_slim xref: FMA:83785 xref: ncithesaurus:Lateral-occipital_Sulcus xref: NIF_GrossAnatomy:birnlex_4018 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002905 name: intralingual sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4019-FMA_83789 xref: FMA:83789 xref: NIF_GrossAnatomy:birnlex_4019 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002906 name: anterior occipital sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4023-FMA_75758 xref: FMA:75758 xref: NIF_GrossAnatomy:birnlex_4023 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002907 name: superior postcentral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4025-FMA_83775 synonym: "postcentral dimple" EXACT [FMA:83775] xref: FMA:83775 xref: NIF_GrossAnatomy:birnlex_4025 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002908 name: subparietal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4026-FMA_83777 synonym: "splenial sulcus" EXACT [FMA:83777] synonym: "suprasplenial sulcus" EXACT [FMA:83777] xref: FMA:83777 xref: NIF_GrossAnatomy:birnlex_4026 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002909 name: posterior subcentral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4027-FMA_83778 xref: FMA:83778 xref: NIF_GrossAnatomy:birnlex_4027 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002910 name: posterior ascending limb of lateral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4028-FMA_83761 synonym: "ascending terminal ramus of Sylvian fissure" EXACT [FMA:83761] synonym: "ascending terminal ramus of sylvian fissure" EXACT [] synonym: "posterior ascending limb of lateral fissure" EXACT [FMA:83761] synonym: "posterior ramus of lateral cerebral sulcus" EXACT [FMA:83761] xref: FMA:83761 xref: NIF_GrossAnatomy:birnlex_4028 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002911 name: parietal operculum alt_id: UBERON:NIF_GrossAnatomy_birnlex_4029-FMA_74889 def: "." [Wikipedia:Parietal_operculum] subset: uberon_slim xref: FMA:74889 xref: NIF_GrossAnatomy:birnlex_4029 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002912 name: marginal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4030-FMA_83773 def: "." [Wikipedia:Marginal_sulcus] subset: uberon_slim synonym: "marginal branch of cingulate sulcus" EXACT [FMA:83773] synonym: "marginal ramus of cingulate sulcus" EXACT [FMA:83773] xref: FMA:83773 xref: NIF_GrossAnatomy:birnlex_4030 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002913 name: intraparietal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4031-FMA_83772 def: "." [Wikipedia:Intraparietal_sulcus] subset: uberon_slim synonym: "interparietal fissure" EXACT [FMA:83772] synonym: "intraparietal fissure" EXACT [FMA:83772] xref: BTO:0003787 xref: FMA:83772 xref: ncithesaurus:Intraparietal_Sulcus xref: NIF_GrossAnatomy:birnlex_4031 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002914 name: inferior postcentral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4032-FMA_83776 xref: FMA:83776 xref: NIF_GrossAnatomy:birnlex_4032 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002915 name: postcentral sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4033-FMA_83774 def: "." [Wikipedia:Postcentral_sulcus] subset: uberon_slim synonym: "postcentral fissure of cerebral hemisphere" EXACT [FMA:83774] synonym: "postcentral fissure-1" EXACT [FMA:83774] xref: FMA:83774 xref: ncithesaurus:Postcentral_Sulcus xref: NIF_GrossAnatomy:birnlex_4033 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002916 name: central sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4035-FMA_83752 def: "." [Wikipedia:Central_sulcus] subset: uberon_slim synonym: "central cerebral sulcus" EXACT [FMA:83752] synonym: "central fissure" EXACT [FMA:83752] synonym: "central sulcus of Rolando" EXACT [FMA:83752] synonym: "central sulcus of rolando" EXACT [] synonym: "fissure of Rolando" EXACT [FMA:83752] synonym: "fissure of rolando" EXACT [] synonym: "sulcus of Rolando" EXACT [FMA:83752] synonym: "sulcus of rolando" EXACT [] xref: FMA:83752 xref: ncithesaurus:Central_Sulcus_of_Rolando xref: NIF_GrossAnatomy:birnlex_4035 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002917 name: regional part of inferior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4036-FMA_77871 synonym: "inferior colliculus segment" EXACT [FMA:77871] synonym: "segment of inferior colliculus" EXACT [NIF_GrossAnatomy:birnlex_4036] xref: FMA:77871 xref: NIF_GrossAnatomy:birnlex_4036 is_a: UBERON:0002966 ! regional part of midbrain tectum intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0002918 name: medial parabrachial nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4038-FMA_72480 def: "." [Wikipedia:Medial_parabrachial_nucleus] subset: uberon_slim xref: FMA:72480 xref: NIF_GrossAnatomy:birnlex_4038 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002919 name: anterior parolfactory sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4039-FMA_83744 synonym: "paraolfactory sulcus" EXACT [FMA:83744] xref: FMA:83744 xref: NIF_GrossAnatomy:birnlex_4039 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002920 name: callosal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4040-FMA_83743 def: "." [Wikipedia:Callosal_sulcus] subset: uberon_slim synonym: "sulcus of corpus callosum" EXACT [FMA:83743] xref: FMA:83743 xref: NIF_GrossAnatomy:birnlex_4040 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002921 name: longitudinal fissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_4041-FMA_83727 def: "." [Wikipedia:Longitudinal_fissure] subset: uberon_slim synonym: "hemispheric sulcus" EXACT [FMA:83727] synonym: "interhemispheric fissure" EXACT [FMA:83727] synonym: "longitudinal cerebral fissure" EXACT [FMA:83727] synonym: "longitudinal sulcus" EXACT [FMA:83727] synonym: "medial longitudinal fissure" EXACT [FMA:83727] synonym: "sagittal fissure" EXACT [FMA:83727] xref: FMA:83727 xref: ncithesaurus:Longitudinal_Fissure xref: NIF_GrossAnatomy:birnlex_4041 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0002922 name: olfactory trigone alt_id: UBERON:NIF_GrossAnatomy_birnlex_4042-FMA_74883 def: "." [Wikipedia:Olfactory_trigone] subset: uberon_slim xref: FMA:74883 xref: NIF_GrossAnatomy:birnlex_4042 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002923 name: posterior parolfactory sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_4043-FMA_83745 xref: FMA:83745 xref: NIF_GrossAnatomy:birnlex_4043 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002924 name: terminal nerve alt_id: UBERON:NIF_GrossAnatomy_birnlex_4044-ZFA_0001356 def: "." [Wikipedia:Terminal_nerve] subset: uberon_slim synonym: "nervus terminalis" EXACT [ZFA:0001356] xref: NIF_GrossAnatomy:birnlex_4044 xref: ZFA:0001356 is_a: UBERON:0001785 ! cranial nerve [Term] id: UBERON:0002925 name: trigeminal nuclear complex alt_id: UBERON:NIF_GrossAnatomy_birnlex_4096-FMA_71248 def: "." [Wikipedia:Trigeminal_nuclei] subset: uberon_slim synonym: "trigeminal nuclei" EXACT [FMA:71248] xref: FMA:71248 xref: NIF_GrossAnatomy:birnlex_4096 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002926 name: gustatory epithelium alt_id: UBERON:NIF_GrossAnatomy_birnlex_4099-FMA_62412 xref: FMA:62412 xref: NIF_GrossAnatomy:birnlex_4099 is_a: UBERON:0000488 ! atypical epithelium [Term] id: UBERON:0002927 name: circumvallate papilla alt_id: UBERON:NIF_GrossAnatomy_birnlex_4106_2-MA_0001594 def: "." [Wikipedia:Circumvallate_papilla] subset: uberon_slim xref: MA:0001594 xref: ncithesaurus:Circumvallate_Papilla xref: NIF_GrossAnatomy:birnlex_4106_2 is_a: UBERON:0001726 ! papilla of tongue [Term] id: UBERON:0002928 name: dentate gyrus polymorphic layer alt_id: UBERON:NIF_GrossAnatomy_birnlex_4128-MA_0002864 xref: MA:0002864 xref: NIF_GrossAnatomy:birnlex_4128 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002304 ! layer of dentate gyrus [Term] id: UBERON:0002929 name: dentate gyrus pyramidal layer alt_id: UBERON:NIF_GrossAnatomy_birnlex_4129-MA_0000948 xref: MA:0000948 xref: NIF_GrossAnatomy:birnlex_4129 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002304 ! layer of dentate gyrus [Term] id: UBERON:0002930 name: tectopontine tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_701-FMA_72505 synonym: "tectopontine fibers" EXACT [FMA:72505] synonym: "tectopontine fibres" EXACT [FMA:72505] xref: FMA:72505 xref: NIF_GrossAnatomy:birnlex_701 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002931 name: dorsal septal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_704-FMA_61877 xref: FMA:61877 xref: NIF_GrossAnatomy:birnlex_704 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002932 name: trapezoid body alt_id: UBERON:NIF_GrossAnatomy_birnlex_707-FMA_72487 def: "." [Wikipedia:Trapezoid_body] subset: uberon_slim xref: FMA:72487 xref: NIF_GrossAnatomy:birnlex_707 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002933 name: nucleus of anterior commissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_712-FMA_61883 synonym: "anterior commissure nucleus" EXACT [FMA:61883] synonym: "bed nucleus of anterior commissure" EXACT [FMA:61883] synonym: "nucleus of commissura anterior" EXACT [FMA:61883] xref: FMA:61883 xref: NIF_GrossAnatomy:birnlex_712 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002934 name: ventral oculomotor nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_713-FMA_72422 synonym: "ventral oculomotor cell column" EXACT [FMA:72422] xref: FMA:72422 xref: NIF_GrossAnatomy:birnlex_713 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002935 name: magnocellular part of ventral anterior nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_716-FMA_62192 synonym: "magnocellular division of ventral anterior nucleus of thalamus" EXACT [FMA:62192] synonym: "ventral anterior nucleus, magnocellular part" EXACT [FMA:62192] synonym: "ventral anterior nucleus, pars magnocellularis" EXACT [FMA:62192] synonym: "ventral anterior thalamic nucleus, magnocellular part" EXACT [FMA:62192] xref: FMA:62192 xref: NIF_GrossAnatomy:birnlex_716 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002936 name: magnocellular part of red nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_720-FMA_72431 synonym: "paleoruber" EXACT [FMA:72431] synonym: "red nucleus, magnocellular part" EXACT [FMA:72431] xref: FMA:72431 xref: NIF_GrossAnatomy:birnlex_720 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001947 ! red nucleus [Term] id: UBERON:0002937 name: parvicellular part of ventral anterior nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_722-FMA_62191 synonym: "ventral anterior nucleus, pars parvicellularis" EXACT [FMA:62191] synonym: "ventral anterior thalamic nucleus, parvicellular part" EXACT [FMA:62191] synonym: "ventralis anterior (Jones)" EXACT [FMA:62191] synonym: "ventralis anterior (jones)" EXACT [] xref: FMA:62191 xref: NIF_GrossAnatomy:birnlex_722 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002938 name: parvocellular part of red nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_725-FMA_72430 synonym: "neoruber" EXACT [FMA:72430] synonym: "red nucleus, parvocellular part" EXACT [FMA:72430] xref: FMA:72430 xref: NIF_GrossAnatomy:birnlex_725 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001947 ! red nucleus [Term] id: UBERON:0002939 name: ventral posteroinferior nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_728-FMA_62199 synonym: "ventral posterior inferior nucleus" EXACT [FMA:62199] synonym: "ventral posterior inferior nucleus of thalamus" EXACT [FMA:62199] synonym: "ventral posterior inferior thalamic nucleus" EXACT [FMA:62199] xref: FMA:62199 xref: NIF_GrossAnatomy:birnlex_728 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002940 name: anterior column of fornix alt_id: UBERON:NIF_GrossAnatomy_birnlex_731-FMA_61966 synonym: "anterior crus of fornix" EXACT [FMA:61966] synonym: "anterior pillar of fornix" EXACT [FMA:61966] xref: FMA:61966 xref: NIF_GrossAnatomy:birnlex_731 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002941 name: capsule of red nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_732-FMA_72450 synonym: "red nuclear capsule" EXACT [FMA:72450] xref: FMA:72450 xref: NIF_GrossAnatomy:birnlex_732 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001947 ! red nucleus [Term] id: UBERON:0002942 name: ventral posterolateral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_737-FMA_62200 def: "." [Wikipedia:Ventral_posterolateral_nucleus] subset: uberon_slim synonym: "posterolateral ventral nucleus of thalamus" EXACT [FMA:62200] synonym: "ventral posterolateral nucleus of thalamus" EXACT [FMA:62200] synonym: "ventral posterolateral thalamic nucleus" EXACT [FMA:62200] xref: FMA:62200 xref: NIF_GrossAnatomy:birnlex_737 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002943 name: lingual gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_740-FMA_61904 def: "." [Wikipedia:Lingual_gyrus] subset: uberon_slim synonym: "lingula of cerebral hemisphere" EXACT [FMA:61904] synonym: "medial occipitotemporal gyrus" EXACT [FMA:61904] synonym: "medial occipitotemporal gyrus-2" EXACT [FMA:61904] xref: FMA:61904 xref: NIF_GrossAnatomy:birnlex_740 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0002944 name: spinothalamic tract of medulla alt_id: UBERON:NIF_GrossAnatomy_birnlex_741-FMA_72644 def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the spinal cord towards target cells in the thalamus. This axonal process is a member of those that make up the spinothalamic tract, one of the major routes of nociceptive signaling[GO]." [Wikipedia:Spinothalamic_tract] subset: uberon_slim synonym: "spinothalamic tract" EXACT [FMA:72644] xref: FMA:72644 xref: NIF_GrossAnatomy:birnlex_741 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002945 name: ventral posteromedial nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_743-FMA_62202 def: "." [Wikipedia:Ventral_posteromedial_nucleus] subset: uberon_slim synonym: "arcuate nucleus of thalamus" EXACT [FMA:62202] synonym: "arcuate nucleus-3" EXACT [FMA:62202] synonym: "posteromedial ventral nucleus of thalamus" EXACT [FMA:62202] synonym: "semilunar nucleus" EXACT [FMA:62202] synonym: "thalamic gustatory nucleus" EXACT [FMA:62202] synonym: "ventral posterior medial nucleus" EXACT [FMA:62202] synonym: "ventral posteromedial nucleus of thalamus" EXACT [FMA:62202] xref: FMA:62202 xref: NIF_GrossAnatomy:birnlex_743 is_a: UBERON:0001932 ! implied link automatically realized ! arcuate nucleus of hypothalamus is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter intersection_of: UBERON:0001932 ! arcuate nucleus of hypothalamus intersection_of: part_of UBERON:0001897 ! thalamus [Term] id: UBERON:0002946 name: regional part of cerebellum alt_id: UBERON:NIF_GrossAnatomy_birnlex_748-FMA_256150 synonym: "segment of cerebellum" EXACT [NIF_GrossAnatomy:birnlex_748] xref: FMA:256150 xref: NIF_GrossAnatomy:birnlex_748 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002680 ! regional part of metencephalon intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0002947 name: frontal operculum alt_id: UBERON:NIF_GrossAnatomy_birnlex_751-FMA_74886 xref: FMA:74886 xref: NIF_GrossAnatomy:birnlex_751 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002948 name: superior occipital gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_758-FMA_61901 synonym: "gyrus occipitalis primus" EXACT [FMA:61901] xref: FMA:61901 xref: NIF_GrossAnatomy:birnlex_758 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0002021 ! occipital lobe [Term] id: UBERON:0002949 name: tectospinal tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_759-FMA_72620 def: "a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in the superior colliculus of the midbrain towards target cells in the ventral spinal cord[GO]." [Wikipedia:Tectospinal_tract] subset: uberon_slim synonym: "held's bundle" EXACT [FMA:72620] synonym: "tectospinal pathway" EXACT [FMA:72620] xref: FMA:72620 xref: NIF_GrossAnatomy:birnlex_759 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002950 name: regional part of midbrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_763-FMA_61997 synonym: "midbrain segment" EXACT [FMA:61997] synonym: "segment of midbrain" EXACT [NIF_GrossAnatomy:birnlex_763] xref: FMA:61997 xref: NIF_GrossAnatomy:birnlex_763 is_a: UBERON:0002616 ! regional part of brain intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0002951 name: regional part of intermediate hypothalamic region alt_id: UBERON:NIF_GrossAnatomy_birnlex_767-FMA_62310 synonym: "intermediate hypothalamic region segment" EXACT [FMA:62310] synonym: "segment of intermediate hypothalamic region" EXACT [NIF_GrossAnatomy:birnlex_767] xref: FMA:62310 xref: NIF_GrossAnatomy:birnlex_767 is_a: UBERON:0003048 ! regional part of hypothalamus intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002555 ! intermediate hypothalamic region [Term] id: UBERON:0002952 name: intermediate acoustic stria alt_id: UBERON:NIF_GrossAnatomy_birnlex_768-FMA_72497 synonym: "commissure of Held" EXACT [FMA:72497] synonym: "commissure of held" EXACT [] synonym: "intermediate acoustic stria of Held" EXACT [FMA:72497] synonym: "intermediate acoustic stria of held" EXACT [] xref: FMA:72497 xref: NIF_GrossAnatomy:birnlex_768 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002953 name: lateral lemniscus alt_id: UBERON:NIF_GrossAnatomy_birnlex_774-FMA_72502 def: "." [Wikipedia:Lateral_lemniscus] subset: uberon_slim synonym: "lateral fillet" EXACT [FMA:72502] xref: FMA:72502 xref: NIF_GrossAnatomy:birnlex_774 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002954 name: dorsal hypothalamic area alt_id: UBERON:NIF_GrossAnatomy_birnlex_777-FMA_62339 xref: FMA:62339 xref: NIF_GrossAnatomy:birnlex_777 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002955 name: rhomboidal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_778-FMA_62154 synonym: "rhomboid nucleus" EXACT [FMA:62154] synonym: "rhomboid thalamic nucleus" EXACT [FMA:62154] xref: BTO:0002458 xref: FMA:62154 xref: NIF_GrossAnatomy:birnlex_778 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002956 name: granular layer of cerebellar cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_779-FMA_83140 xref: FMA:83140 xref: NIF_GrossAnatomy:birnlex_779 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002957 name: caudal central oculomotor nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_780-FMA_72426 synonym: "caudal central nucleus" EXACT [FMA:72426] synonym: "caudal central nucleus of oculomotor nerve" EXACT [FMA:72426] xref: FMA:72426 xref: NIF_GrossAnatomy:birnlex_780 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002958 name: medial lemniscus of pons alt_id: UBERON:NIF_GrossAnatomy_birnlex_781-FMA_72503 xref: FMA:72503 xref: NIF_GrossAnatomy:birnlex_781 is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon is_a: UBERON:0003002 ! medial lemniscus is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter intersection_of: UBERON:0003002 ! medial lemniscus intersection_of: part_of UBERON:0000988 ! pons [Term] id: UBERON:0002959 name: subfascicular nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_783-FMA_62155 xref: FMA:62155 xref: NIF_GrossAnatomy:birnlex_783 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002960 name: central oculomotor nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_786-FMA_72425 synonym: "central nucleus of Perlia" EXACT [FMA:72425] synonym: "central nucleus of perlia" EXACT [] synonym: "nucleus of Perlia" EXACT [FMA:72425] synonym: "nucleus of perlia" EXACT [] synonym: "spitzka's nucleus" EXACT [FMA:72425] xref: FMA:72425 xref: NIF_GrossAnatomy:birnlex_786 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002961 name: archicortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_787-FMA_62424 def: "A portion of the cerebral cortex that, with the paleocortex, develops in association with the olfactory system, and which is phylogenetically older than the neocortex and lacks its layered structure. The embryonic archicortex corresponds to the cortex of the dentate gyrus and hippocampus in mature mammals. Being part of the limbic system, it has functions related to emotions and formation of memory. Signals being sent from the limbic lobe to the hippocampal formations can go via the archicortex as an intermediate." [Wikipedia:Archicortex] subset: uberon_slim synonym: "archipallium" EXACT [FMA:62424] xref: FMA:62424 xref: NIF_GrossAnatomy:birnlex_787 is_a: UBERON:0003208 [Term] id: UBERON:0002962 name: microtubule alt_id: UBERON:NIF_GrossAnatomy_birnlex_788-FMA_63849 def: "." [Wikipedia:Microtubule] subset: uberon_slim synonym: "microtubulus" EXACT [FMA:63849] xref: FMA:63849 xref: GO:0005874 xref: ncithesaurus:Microtubule xref: NIF_GrossAnatomy:birnlex_788 is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0002963 name: caudal pontine reticular nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_792-FMA_72469 def: "." [Wikipedia:Caudal_pontine_reticular_nucleus] subset: uberon_slim synonym: "pontine reticular nucleus, caudal part" EXACT [FMA:72469] xref: FMA:72469 xref: NIF_GrossAnatomy:birnlex_792 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002964 name: dorsal oculomotor nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_793-FMA_62442 synonym: "dorsal oculomotor cell column" EXACT [FMA:62442] xref: FMA:62442 xref: NIF_GrossAnatomy:birnlex_793 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002965 name: rostral intralaminar nuclei alt_id: UBERON:NIF_GrossAnatomy_birnlex_794-FMA_62164 synonym: "rostral intralaminar nuclei" EXACT [FMA:62164] xref: FMA:62164 xref: NIF_GrossAnatomy:birnlex_794 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002966 name: regional part of midbrain tectum alt_id: UBERON:NIF_GrossAnatomy_birnlex_795-FMA_62398 synonym: "midbrain tectum segment" EXACT [FMA:62398] synonym: "segment of midbrain tectum" EXACT [NIF_GrossAnatomy:birnlex_795] xref: FMA:62398 xref: NIF_GrossAnatomy:birnlex_795 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0002314 ! midbrain tectum [Term] id: UBERON:0002967 name: cingulate gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_798-FMA_62434 def: "A gyrus in the medial part of the brain. It partially wraps around the corpus callosum and is limited above by the cingulate sulcus. The cortical part of the cingulate gyrus is referred to as cingulate cortex.[Wikipedia]. The cingulate gyrus receives inputs from the anterior nucleus of the thalamus and the neocortex, as well as from somatosensory areas of the cerebral cortex. It projects to the entorhinal cortex via the cingulum. It functions as an integral part of the limbic system, which is involved with emotion formation and processing, learning, and memory. Also, executive control needed to suppress inappropriate unconscious priming is known to involve the anterior cingulate gyrus. It is also involved in respiratory control." [Wikipedia:Cingulate_gyrus] subset: uberon_slim synonym: "cingulate area" EXACT [FMA:62434] synonym: "cingulate region" EXACT [FMA:62434] synonym: "falciform lobe" EXACT [FMA:62434] synonym: "upper limbic gyrus" EXACT [FMA:62434] xref: BTO:0003976 xref: FMA:62434 xref: NIF_GrossAnatomy:birnlex_798 is_a: UBERON:0000200 ! gyrus relationship: part_of UBERON:0000349 ! limbic system [Term] id: UBERON:0002968 name: central gray substance of pons alt_id: UBERON:NIF_GrossAnatomy_birnlex_799-FMA_72470 synonym: "central gray of pons" EXACT [FMA:72470] synonym: "pontine central gray" EXACT [FMA:72470] xref: FMA:72470 xref: NIF_GrossAnatomy:birnlex_799 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002969 name: inferior temporal sulcus alt_id: UBERON:NIF_GrossAnatomy_birnlex_800-FMA_83784 synonym: "inferior temporal sulcus-1" EXACT [FMA:83784] synonym: "middle temporal sulcus (Szikla)" EXACT [FMA:83784] synonym: "middle temporal sulcus (szikla)" EXACT [] synonym: "second temporal sulcus" EXACT [FMA:83784] synonym: "sulcus t2" EXACT [FMA:83784] xref: FMA:83784 xref: ncithesaurus:Inferior_Temporal_Sulcus xref: NIF_GrossAnatomy:birnlex_800 is_a: UBERON:0000093 ! sulcus [Term] id: UBERON:0002970 name: intermediate oculomotor nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_803-FMA_72420 synonym: "intermediate oculomotor cell column" EXACT [FMA:72420] xref: FMA:72420 xref: NIF_GrossAnatomy:birnlex_803 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002971 name: periolivary nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_804-MA_0002757 xref: MA:0002757 xref: NIF_GrossAnatomy:birnlex_804 is_a: UBERON:0002680 ! regional part of metencephalon relationship: part_of UBERON:0002128 ! superior olivary complex [Term] id: UBERON:0002972 name: centromedian nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_805-FMA_62165 def: "." [Wikipedia:Centromedian_nucleus] subset: uberon_slim synonym: "central magnocellular nucleus of thalamus" EXACT [FMA:62165] synonym: "central nucleus-1" EXACT [FMA:62165] synonym: "centre median nucleus" EXACT [FMA:62165] synonym: "centromedian nucleus of thalamus" EXACT [FMA:62165] synonym: "centromedian thalamic nucleus" EXACT [FMA:62165] synonym: "noyau centre median of Luys" EXACT [FMA:62165] synonym: "noyau centre median of luys" EXACT [] xref: FMA:62165 xref: NIF_GrossAnatomy:birnlex_805 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002973 name: parahippocampal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_807-FMA_61918 def: "a grey matter cortical region of the brain that surrounds the hippocampus. This region plays an important role in memory encoding and retrieval. The anterior part of the gyrus includes the perirhinal and entorhinal cortices. The term parahippocampal cortex is used to refer to an area that encompasses both the posterior portion of the parahippocampal gyrus and the medial portion of the fusiform gyrus.[Wikipedia]." [Wikipedia:Parahippocampal_gyrus] subset: uberon_slim synonym: "hippocampal gyrus" EXACT [FMA:61918] xref: FMA:61918 xref: ncithesaurus:Parahippocampal_Gyrus xref: NIF_GrossAnatomy:birnlex_807 is_a: UBERON:0000200 ! gyrus is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0000349 ! limbic system relationship: part_of UBERON:0001871 ! temporal lobe relationship: surrounds UBERON:0001954 ! hippocampus [Term] id: UBERON:0002974 name: molecular layer of cerebellar cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_810-FMA_83897 xref: FMA:83897 xref: NIF_GrossAnatomy:birnlex_810 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002975 name: medial oculomotor nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_813-FMA_72421 synonym: "medial oculomotor cell column" EXACT [FMA:72421] xref: FMA:72421 xref: NIF_GrossAnatomy:birnlex_813 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002976 name: preolivary nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_814-FMA_72474 synonym: "preolivary nuclei" EXACT [FMA:72474] xref: FMA:72474 xref: NIF_GrossAnatomy:birnlex_814 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0002128 ! superior olivary complex [Term] id: UBERON:0002977 name: triangular septal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_816-FMA_61880 synonym: "triangular nucleus of septum" EXACT [FMA:61880] xref: FMA:61880 xref: NIF_GrossAnatomy:birnlex_816 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002978 name: oral part of ventral lateral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_817-FMA_62193 synonym: "ventral anterior nucleus, pars densicellularis" EXACT [FMA:62193] synonym: "ventral lateral anterior nucleus" EXACT [FMA:62193] synonym: "ventral lateral nucleus, oral part" EXACT [FMA:62193] synonym: "ventral lateral thalamic nucleus, oral part" EXACT [FMA:62193] xref: FMA:62193 xref: NIF_GrossAnatomy:birnlex_817 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001925 ! ventral lateral nucleus [Term] id: UBERON:0002979 name: purkinje cell layer of cerebellar cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_818-FMA_83896 synonym: "purkinje cell layer" EXACT [FMA:83896] xref: FMA:83896 xref: NIF_GrossAnatomy:birnlex_818 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0002980 name: opercular part of inferior frontal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_823-FMA_61981 synonym: "opercular portion of inferior frontal gyrus" EXACT [FMA:61981] synonym: "posterior part of inferior frontal gyrus" EXACT [FMA:61981] xref: FMA:61981 xref: NIF_GrossAnatomy:birnlex_823 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0002981 name: pulvinar alt_id: UBERON:NIF_GrossAnatomy_birnlex_824-FMA_62178 def: "." [Wikipedia:Pulvinar] subset: uberon_slim synonym: "pulvinar nuclei" EXACT [FMA:62178] synonym: "pulvinar nucleus" EXACT [FMA:62178] xref: FMA:62178 xref: NIF_GrossAnatomy:birnlex_824 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002982 name: inferior pulvinar nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_830-FMA_62183 xref: FMA:62183 xref: NIF_GrossAnatomy:birnlex_830 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002983 name: lateral posterior nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_835-FMA_62177 synonym: "lateral posterior nucleus of thalamus" EXACT [FMA:62177] synonym: "lateral posterior thalamic nucleus" EXACT [FMA:62177] synonym: "laterodorsal nucleus, caudal part" EXACT [FMA:62177] synonym: "posterior lateral nucleus of thalamus" EXACT [FMA:62177] xref: FMA:62177 xref: NIF_GrossAnatomy:birnlex_835 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002984 name: lateral dorsal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_838-FMA_62176 synonym: "lateral dorsal nucleus of thalamus" EXACT [FMA:62176] synonym: "lateral dorsal thalamic nucleus" EXACT [FMA:62176] synonym: "laterodorsal nucleus, superficial part" EXACT [FMA:62176] synonym: "laterodorsal thalamic nucleus" EXACT [FMA:62176] xref: FMA:62176 xref: NIF_GrossAnatomy:birnlex_838 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002985 name: ventral nucleus of medial geniculate body alt_id: UBERON:NIF_GrossAnatomy_birnlex_845-FMA_62217 synonym: "medial geniculate complex, ventral part" EXACT [FMA:62217] synonym: "medial geniculate nucleus, ventral part" EXACT [FMA:62217] synonym: "ventral nucleus of medial geniculate complex" EXACT [FMA:62217] synonym: "ventral principal nucleus of medial geniculate body" EXACT [FMA:62217] xref: BTO:0002671 xref: FMA:62217 xref: NIF_GrossAnatomy:birnlex_845 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain relationship: part_of UBERON:0001927 ! medial geniculate body [Term] id: UBERON:0002986 name: neurofilament alt_id: UBERON:NIF_GrossAnatomy_birnlex_846-FMA_63859 def: "." [Wikipedia:Neurofilament] subset: uberon_slim synonym: "neuronal intermediate filament" EXACT [FMA:63859] xref: FMA:63859 xref: GO:0005883 xref: ncithesaurus:Neurofilament xref: NIF_GrossAnatomy:birnlex_846 is_a: UBERON:0003000 ! intermediate filament [Term] id: UBERON:0002987 name: anterior spinocerebellar tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_848-FMA_72642 def: "." [Wikipedia:Anterior_spinocerebellar_tract] subset: uberon_slim synonym: "gowers' tract" EXACT [FMA:72642] synonym: "ventral spinocerebellar tract" EXACT [FMA:72642] xref: FMA:72642 xref: NIF_GrossAnatomy:birnlex_848 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0002990 name: mammillothalamic tract of hypothalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_855-FMA_62059 xref: FMA:62059 xref: NIF_GrossAnatomy:birnlex_855 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0002991 name: supramammillary commissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_859-FMA_62056 synonym: "commissure of Forel" EXACT [FMA:62056] synonym: "commissure of forel" EXACT [] synonym: "commissure y" EXACT [FMA:62056] synonym: "postmammillary decussation" EXACT [FMA:62056] synonym: "supramammillary decussation" EXACT [FMA:62056] xref: FMA:62056 xref: NIF_GrossAnatomy:birnlex_859 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0002992 name: paratenial nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_860-FMA_62151 synonym: "parataenial nucleus" EXACT [FMA:62151] synonym: "paratenial thalamic nucleus" EXACT [FMA:62151] xref: FMA:62151 xref: NIF_GrossAnatomy:birnlex_860 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002993 name: inferior central nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_861-FMA_72466 def: "." [Wikipedia:Inferior_central_nucleus] subset: uberon_slim synonym: "inferior central nucleus (of Roller)" EXACT [FMA:72466] synonym: "inferior central nucleus (of roller)" EXACT [] synonym: "inferior central nucleus of raphe" EXACT [FMA:72466] synonym: "inferior central tegmental nucleus" EXACT [FMA:72466] xref: FMA:72466 xref: NIF_GrossAnatomy:birnlex_861 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002994 name: nucleus of pretectal area alt_id: UBERON:NIF_GrossAnatomy_birnlex_864-FMA_72401 synonym: "pretectal area nucleus" EXACT [FMA:72401] xref: FMA:72401 xref: NIF_GrossAnatomy:birnlex_864 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0002995 name: substantia nigra pars lateralis alt_id: UBERON:NIF_GrossAnatomy_birnlex_866-MA_0001065 xref: MA:0001065 xref: NIF_GrossAnatomy:birnlex_866 is_a: UBERON:0002730 ! implied link automatically realized ! regional part of thalamus is_a: UBERON:0002950 ! regional part of midbrain relationship: part_of UBERON:0002038 ! substantia nigra [Term] id: UBERON:0002996 name: nucleus of optic tract alt_id: UBERON:NIF_GrossAnatomy_birnlex_868-FMA_72403 synonym: "large-celled nucleus of optic tract" EXACT [FMA:72403] synonym: "lentiform nucleus of pretectal area" EXACT [FMA:72403] synonym: "optic tract nucleus" EXACT [FMA:72403] xref: FMA:72403 xref: NIF_GrossAnatomy:birnlex_868 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain is_a: UBERON:0003047 ! implied link automatically realized ! regional part of pretectal region is_a: UBERON:0003528 ! implied link automatically realized ! brain grey matter relationship: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0002997 name: nucleus of medial eminence alt_id: UBERON:NIF_GrossAnatomy_birnlex_870-FMA_72467 synonym: "medial eminence nucleus" EXACT [FMA:72467] synonym: "nucleus of eminentia teres" EXACT [FMA:72467] xref: FMA:72467 xref: NIF_GrossAnatomy:birnlex_870 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0002998 name: inferior frontal gyrus alt_id: UBERON:NIF_GrossAnatomy_birnlex_873-FMA_61860 def: "." [Wikipedia:Inferior_frontal_gyrus] subset: uberon_slim synonym: "inferior frontal convolution" EXACT [FMA:61860] xref: FMA:61860 xref: ncithesaurus:Inferior_Frontal_Convolution xref: NIF_GrossAnatomy:birnlex_873 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002619 ! implied link automatically realized ! regional part of cerebral cortex relationship: part_of UBERON:0001870 ! frontal lobe [Term] id: UBERON:0002999 name: oral pontine reticular nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_875-FMA_72468 def: "." [Wikipedia:Oral_pontine_reticular_nucleus] subset: uberon_slim synonym: "pontine reticular nucleus, rostral part" EXACT [FMA:72468] xref: FMA:72468 xref: NIF_GrossAnatomy:birnlex_875 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003000 name: intermediate filament alt_id: UBERON:NIF_GrossAnatomy_birnlex_879-FMA_63851 def: "." [Wikipedia:Intermediate_filament] subset: uberon_slim xref: FMA:63851 xref: GO:0005882 xref: ncithesaurus:Intermediate_Filament xref: NIF_GrossAnatomy:birnlex_879 is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0003001 name: lemniscus alt_id: UBERON:NIF_GrossAnatomy_birnlex_881-FMA_76742 def: "." [Wikipedia:Lemniscus] subset: uberon_slim xref: FMA:76742 xref: NIF_GrossAnatomy:birnlex_881 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003002 name: medial lemniscus alt_id: UBERON:NIF_GrossAnatomy_birnlex_887-FMA_83675 def: "." [Wikipedia:Medial_lemniscus] subset: uberon_slim xref: FMA:83675 xref: NIF_GrossAnatomy:birnlex_887 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0003003 name: microfilament alt_id: UBERON:NIF_GrossAnatomy_birnlex_888-FMA_63850 def: "." [Wikipedia:Microfilament] subset: uberon_slim synonym: "microfilament" EXACT [FMA:63850] synonym: "microfilamentum" EXACT [FMA:63850] xref: FMA:63850 xref: GO:0005884 xref: NIF_GrossAnatomy:birnlex_888 is_a: UBERON:0000470 ! cell part [Term] id: UBERON:0003004 name: superior central nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_889-FMA_72465 def: "." [Wikipedia:Superior_central_nucleus] subset: uberon_slim synonym: "cell group B8" EXACT [FMA:72465] synonym: "cell group b8" EXACT [] synonym: "median nucleus of the raphe" EXACT [FMA:72465] synonym: "median raphe nucleus" EXACT [FMA:72465] synonym: "superior central nucleus raphe" EXACT [FMA:72465] synonym: "superior central tegmental nucleus" EXACT [FMA:72465] xref: FMA:72465 xref: NIF_GrossAnatomy:birnlex_889 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003005 name: dorsal longitudinal fasciculus of midbrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_893-FMA_72453 xref: FMA:72453 xref: NIF_GrossAnatomy:birnlex_893 is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: part_of UBERON:0001891 ! midbrain relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0003006 name: dorsal nucleus of lateral lemniscus alt_id: UBERON:NIF_GrossAnatomy_birnlex_894-FMA_72483 synonym: "dorsal nucleus of the lateral lemniscus" EXACT [FMA:72483] synonym: "posterior nucleus of lateral lemniscus" EXACT [FMA:72483] xref: FMA:72483 xref: NIF_GrossAnatomy:birnlex_894 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003007 name: lateral parabrachial nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_897-FMA_72481 def: "." [Wikipedia:Lateral_parabrachial_nucleus] subset: uberon_slim xref: FMA:72481 xref: NIF_GrossAnatomy:birnlex_897 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003008 name: dorsal longitudinal fasciculus of hypothalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_898-FMA_62063 xref: FMA:62063 xref: NIF_GrossAnatomy:birnlex_898 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0003045 ! dorsal longitudinal fasciculus is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter intersection_of: UBERON:0003045 ! dorsal longitudinal fasciculus intersection_of: part_of UBERON:0001898 ! hypothalamus relationship: part_of UBERON:0002430 ! lateral hypothalamic area [Term] id: UBERON:0003009 name: dorsal tegmental decussation alt_id: UBERON:NIF_GrossAnatomy_birnlex_901-FMA_72451 synonym: "dorsal fountain decussation" EXACT [FMA:72451] synonym: "fountain decussation of Meynert" EXACT [FMA:72451] synonym: "fountain decussation of meynert" EXACT [] synonym: "meynert's decussation" EXACT [FMA:72451] synonym: "posterior tegmental decussation" EXACT [FMA:72451] xref: FMA:72451 xref: NIF_GrossAnatomy:birnlex_901 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0003010 name: lateral pes lemniscus alt_id: UBERON:NIF_GrossAnatomy_birnlex_902-FMA_72459 synonym: "deep pes lemniscus" EXACT [FMA:72459] synonym: "lateral pontine bundle" EXACT [FMA:72459] synonym: "laterale Haubenfussschleife" EXACT [FMA:72459] synonym: "laterale haubenfussschleife" EXACT [] synonym: "laterale pontine Buendel" EXACT [FMA:72459] synonym: "laterale pontine buendel" EXACT [] xref: FMA:72459 xref: NIF_GrossAnatomy:birnlex_902 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0003011 name: facial motor nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_903-FMA_54582 def: "." [Wikipedia:Facial_motor_nucleus] subset: uberon_slim synonym: "branchiomotor nucleus of facial nerve" EXACT [FMA:54582] synonym: "facial motor nucleus" EXACT [FMA:54582] synonym: "facial nucleus" RELATED [Wikipedia:Facial_nucleus] synonym: "motor nucleus of VII" EXACT [FMA:54582] synonym: "motor nucleus of vii" EXACT [] xref: FMA:54582 xref: NIF_GrossAnatomy:birnlex_903 xref: ZFA:0000206 is_a: UBERON:0000127 ! facial nucleus [Term] id: UBERON:0003012 name: flocculonodular lobe alt_id: UBERON:NIF_GrossAnatomy_birnlex_904-FMA_72253 def: "." [Wikipedia:Flocculonodular_lobe] subset: uberon_slim synonym: "flocculonodular lobe" EXACT [FMA:72253] synonym: "posterior lobe-2 of cerebellum" EXACT [FMA:72253] xref: FMA:72253 xref: NIF_GrossAnatomy:birnlex_904 is_a: UBERON:0000477 ! anatomical cluster is_a: UBERON:0002749 ! implied link automatically realized ! regional part of cerebellar cortex relationship: part_of UBERON:0002129 ! cerebellar cortex [Term] id: UBERON:0003013 name: alar central lobule alt_id: UBERON:NIF_GrossAnatomy_birnlex_907-FMA_72517 def: "." [Wikipedia:Alar_central_lobule] subset: uberon_slim synonym: "alae of central lobule" EXACT [FMA:72517] synonym: "lobules II, III of vermis" EXACT [FMA:72517] synonym: "lobules ii, iii of vermis" EXACT [] xref: FMA:72517 xref: NIF_GrossAnatomy:birnlex_907 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0003014 name: tuberal part of hypophysis alt_id: UBERON:NIF_GrossAnatomy_birnlex_912-FMA_74635 synonym: "infundibular stem of neurohypophysis" EXACT [FMA:74635] synonym: "infundibulum of pituitary gland" EXACT [FMA:74635] synonym: "infundibulum of posterior lobe of pituitary gland" EXACT [FMA:74635] synonym: "neurohypophysis infundibulum" EXACT [FMA:74635] synonym: "tuberal part of hypophysis" EXACT [FMA:74635] xref: FMA:74635 xref: NIF_GrossAnatomy:birnlex_912 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0003015 name: anterior quadrangular lobule alt_id: UBERON:NIF_GrossAnatomy_birnlex_913-FMA_72516 synonym: "anterior crescentic lobule of cerebellum" EXACT [FMA:72516] synonym: "anterior quadrangular lobule of cerebellum" EXACT [FMA:72516] synonym: "anterior quadrangular lobule of cerebellum [H IV et V]" EXACT [FMA:72516] synonym: "anterior quadrangular lobule of cerebellum [h iv et v]" EXACT [] synonym: "anterior semilunar lobule" EXACT [FMA:72516] synonym: "semilunar lobule-1 (anterior)" EXACT [FMA:72516] xref: FMA:72516 xref: NIF_GrossAnatomy:birnlex_913 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0003016 name: postcommissural fornix alt_id: UBERON:NIF_GrossAnatomy_birnlex_914-FMA_62062 xref: FMA:62062 xref: NIF_GrossAnatomy:birnlex_914 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0003048 ! implied link automatically realized ! regional part of hypothalamus is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0002430 ! lateral hypothalamic area [Term] id: UBERON:0003017 name: substantia innominata alt_id: UBERON:NIF_GrossAnatomy_birnlex_915-FMA_61885 def: "." [Wikipedia:Substantia_innominata] subset: uberon_slim synonym: "innominate substance" EXACT [FMA:61885] synonym: "nucleus of substantia innominata" EXACT [FMA:61885] xref: BTO:0002447 xref: FMA:61885 xref: NIF_GrossAnatomy:birnlex_915 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003018 name: parvicellular part of ventral posteromedial nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_917-FMA_62207 synonym: "gustatory thalamic nucleus" EXACT [FMA:62207] synonym: "parvicellular part of ventral posteromedial nucleus of thalamus" EXACT [FMA:62207] synonym: "ventral posteromedial nucleus of thalamus, parvicellular part" EXACT [FMA:62207] synonym: "ventral posteromedial nucleus, parvocellular part" EXACT [FMA:62207] synonym: "ventral posteromedial thalamic nucleus, parvicellular part" EXACT [FMA:62207] xref: FMA:62207 xref: NIF_GrossAnatomy:birnlex_917 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0003019 name: oral part of ventral posterolateral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_918-FMA_62205 synonym: "ventral part of ventral lateral posterior nucleus (Jones)" EXACT [FMA:62205] synonym: "ventral part of ventral lateral posterior nucleus (jones)" EXACT [] synonym: "ventral posterolateral nucleus, oral part" EXACT [FMA:62205] synonym: "ventral posterolateral thalamic nucleus, oral part" EXACT [FMA:62205] xref: FMA:62205 xref: NIF_GrossAnatomy:birnlex_918 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0003020 name: subcallosal area alt_id: UBERON:NIF_GrossAnatomy_birnlex_919-FMA_61890 def: "." [Wikipedia:Subcallosal_area] subset: uberon_slim synonym: "adolfactory area" EXACT [FMA:61890] synonym: "paraolfactory area" EXACT [FMA:61890] synonym: "parolfactory area" EXACT [FMA:61890] xref: FMA:61890 xref: NIF_GrossAnatomy:birnlex_919 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0003021 name: central lobule alt_id: UBERON:NIF_GrossAnatomy_birnlex_920-FMA_72519 def: "." [Wikipedia:Central_lobule] subset: uberon_slim synonym: "central lobule of cerebellum" EXACT [FMA:72519] synonym: "central lobule of cerebellum [II and III]" EXACT [FMA:72519] synonym: "central lobule of cerebellum [ii and iii]" EXACT [] xref: FMA:72519 xref: NIF_GrossAnatomy:birnlex_920 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0003022 name: lobe parts of cerebral cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_922-FMA_68603 synonym: "cerebral cortical segment" EXACT [FMA:68603] synonym: "regional organ part of cerebral cortex" EXACT [FMA:68603] synonym: "segment of cerebral cortex" EXACT [NIF_GrossAnatomy:birnlex_922] xref: FMA:68603 xref: NIF_GrossAnatomy:birnlex_922 is_a: UBERON:0000063 ! organ segment [Term] id: UBERON:0003023 name: pontine tegmentum alt_id: UBERON:NIF_GrossAnatomy_birnlex_923-FMA_71108 def: "." [Wikipedia:Pontine_tegmentum] subset: uberon_slim synonym: "dorsal portion of pons" EXACT [FMA:71108] synonym: "tegmental portion of pons" EXACT [FMA:71108] synonym: "tegmentum of pons" EXACT [FMA:71108] xref: FMA:71108 xref: NIF_GrossAnatomy:birnlex_923 is_a: UBERON:0000064 ! organ part is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon relationship: has_part UBERON:0002047 ! pontine raphe nucleus relationship: has_part UBERON:0002128 ! superior olivary complex relationship: has_part UBERON:0002148 ! locus ceruleus relationship: has_part UBERON:0002149 ! superior salivatory nucleus relationship: part_of UBERON:0000988 ! pons [Term] id: UBERON:0003024 name: principal part of ventral posteromedial nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_927-FMA_62208 xref: FMA:62208 xref: NIF_GrossAnatomy:birnlex_927 is_a: UBERON:0002020 ! gray matter of neuraxis [Term] id: UBERON:0003025 name: brachium of inferior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_929-FMA_71114 def: "." [Wikipedia:Brachium_of_inferior_colliculus] subset: uberon_slim synonym: "brachium of medial geniculate" EXACT [FMA:71114] synonym: "inferior brachium" EXACT [FMA:71114] synonym: "inferior collicular brachium" EXACT [FMA:71114] synonym: "inferior colliculus brachium" EXACT [FMA:71114] synonym: "inferior quadrigeminal brachium" EXACT [FMA:71114] synonym: "peduncle of inferior colliculus" EXACT [FMA:71114] xref: FMA:71114 xref: NIF_GrossAnatomy:birnlex_929 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002917 ! implied link automatically realized ! regional part of inferior colliculus is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0003026 name: limitans nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_931-FMA_62220 xref: FMA:62220 xref: NIF_GrossAnatomy:birnlex_931 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003027 name: cingulate cortex alt_id: UBERON:NIF_GrossAnatomy_birnlex_934-MA_0000904 def: "." [Wikipedia:Cingulate_cortex] subset: uberon_slim xref: BTO:0003975 xref: EFO:0000343 xref: MA:0000904 xref: ncithesaurus:Cingulate_Cortex xref: NIF_GrossAnatomy:birnlex_934 is_a: UBERON:0002619 ! regional part of cerebral cortex is_a: UBERON:0002791 ! regional part of telencephalon is_a: UBERON:0003022 ! lobe parts of cerebral cortex [Term] id: UBERON:0003028 name: commissure of inferior colliculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_935-FMA_71115 synonym: "commissure of inferior colliculi" EXACT [FMA:71115] synonym: "inferior collicular commissure" EXACT [FMA:71115] synonym: "inferior colliculus commissure" EXACT [FMA:71115] xref: FMA:71115 xref: NIF_GrossAnatomy:birnlex_935 is_a: UBERON:0001020 ! commissure is_a: UBERON:0002917 ! implied link automatically realized ! regional part of inferior colliculus intersection_of: UBERON:0001020 ! commissure intersection_of: part_of UBERON:0001946 ! inferior colliculus relationship: part_of UBERON:0001946 ! inferior colliculus [Term] id: UBERON:0003029 name: stria terminalis alt_id: UBERON:NIF_GrossAnatomy_birnlex_937-FMA_61974 def: "." [Wikipedia:Stria_terminalis] subset: uberon_slim synonym: "semicircular stria" EXACT [FMA:61974] xref: FMA:61974 xref: NIF_GrossAnatomy:birnlex_937 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0003030 name: posterior nucleus of thalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_939-FMA_62221 xref: FMA:62221 xref: NIF_GrossAnatomy:birnlex_939 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003031 name: submedial nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_946-FMA_62223 synonym: "gelatinosus thalamic nucleus" EXACT [FMA:62223] synonym: "submedial nucleus of thalamus" EXACT [FMA:62223] xref: FMA:62223 xref: NIF_GrossAnatomy:birnlex_946 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003032 name: decussation of superior cerebellar peduncle alt_id: UBERON:NIF_GrossAnatomy_birnlex_951-FMA_72455 def: "." [Wikipedia:Decussation_of_superior_cerebellar_peduncle] subset: uberon_slim synonym: "decussation of brachium conjunctivum" EXACT [FMA:72455] synonym: "decussation of superior cerebellar peduncles" EXACT [FMA:72455] synonym: "superior cerebellar peduncle decussation" EXACT [FMA:72455] synonym: "wernekink's decussation" EXACT [FMA:72455] xref: FMA:72455 xref: NIF_GrossAnatomy:birnlex_951 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003545 ! implied link automatically realized ! brainstem white matter relationship: part_of UBERON:0001943 ! midbrain tegmentum [Term] id: UBERON:0003033 name: suprageniculate nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_953-FMA_62222 synonym: "suprageniculate thalamic nucleus" EXACT [FMA:62222] xref: FMA:62222 xref: NIF_GrossAnatomy:birnlex_953 is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003034 name: central dorsal nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_956-FMA_62169 xref: FMA:62169 xref: NIF_GrossAnatomy:birnlex_956 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003035 name: regional part of cerebellar white matter alt_id: UBERON:NIF_GrossAnatomy_birnlex_959-FMA_72547 synonym: "segment of cerebellar white matter" EXACT [NIF_GrossAnatomy:birnlex_959] xref: FMA:72547 xref: NIF_GrossAnatomy:birnlex_959 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0003036 name: central lateral nucleus alt_id: UBERON:NIF_GrossAnatomy_birnlex_961-FMA_62170 synonym: "central lateral nucleus of thalamus" EXACT [FMA:62170] synonym: "central lateral thalamic nucleus" EXACT [FMA:62170] synonym: "centrolateral thalamic nucleus" EXACT [FMA:62170] xref: FMA:62170 xref: NIF_GrossAnatomy:birnlex_961 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003037 name: septum alt_id: UBERON:NIF_GrossAnatomy_birnlex_963-FMA_86461 def: "a wall, dividing a cavity or structure into smaller ones[WP]." [Wikipedia:Septum] xref: FMA:86461 xref: NIF_GrossAnatomy:birnlex_963 xref: OpenCyc:Mx4rrqot_on_EdaAAAACs0uFOQ is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003038 name: thoracic spinal cord alt_id: UBERON:NIF_GrossAnatomy_birnlex_966-FMA_71167 def: "." [Wikipedia:Thoracic_spinal_cord] subset: uberon_slim synonym: "thoracic region of spinal cord" EXACT [FMA:71167] synonym: "thoracic segments of spinal cord [1-12]" EXACT [FMA:71167] synonym: "thoracic spinal cord" EXACT [FMA:71167] xref: FMA:71167 xref: ncithesaurus:Thoracic_Spinal_Cord xref: NIF_GrossAnatomy:birnlex_966 is_a: UBERON:0001948 ! regional part of spinal cord intersection_of: UBERON:0001948 ! regional part of spinal cord intersection_of: part_of UBERON:0000915 ! thorax [Term] id: UBERON:0003039 name: anterior commissure anterior part alt_id: UBERON:NIF_GrossAnatomy_birnlex_969-FMA_61963 synonym: "anterior commissure, anterior part" EXACT [FMA:61963] synonym: "olfactory limb of anterior commissure" EXACT [FMA:61963] synonym: "olfactory part of anterior commissure" EXACT [FMA:61963] xref: FMA:61963 xref: NIF_GrossAnatomy:birnlex_969 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0000935 ! anterior commissure [Term] id: UBERON:0003040 name: central gray substance of midbrain alt_id: UBERON:NIF_GrossAnatomy_birnlex_973-FMA_74510 def: "." [Wikipedia:Periaqueductal_gray] subset: uberon_slim synonym: "anulus of cerebral aqueduct" EXACT [FMA:74510] synonym: "central (periaqueductal) gray" EXACT [FMA:74510] synonym: "periaqueductal gray" EXACT [FMA:74510] synonym: "periaqueductal gray matter" EXACT [FMA:74510] synonym: "periaqueductal gray of tegmentum" EXACT [FMA:74510] synonym: "periaqueductal grey substance" EXACT [FMA:74510] xref: EFO:0002470 xref: FMA:74510 xref: NIF_GrossAnatomy:birnlex_973 is_a: UBERON:0002020 ! gray matter of neuraxis is_a: UBERON:0002308 ! nucleus of brain [Term] id: UBERON:0003041 name: trigeminal nerve fibers alt_id: UBERON:NIF_GrossAnatomy_birnlex_974-FMA_72501 synonym: "central part of trigeminal nerve" EXACT [FMA:72501] synonym: "trigeminal nerve fibers" EXACT [FMA:72501] xref: FMA:72501 xref: NIF_GrossAnatomy:birnlex_974 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0003042 name: lateral lemniscus alt_id: UBERON:NIF_GrossAnatomy_birnlex_976-FMA_72502 def: "." [Wikipedia:Lateral_lemniscus] subset: uberon_slim synonym: "lateral fillet" EXACT [FMA:72502] xref: FMA:72502 xref: NIF_GrossAnatomy:birnlex_976 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0003043 name: posterior part of anterior commissure alt_id: UBERON:NIF_GrossAnatomy_birnlex_977-FMA_61964 synonym: "anterior commissure, posterior part" EXACT [FMA:61964] synonym: "temporal limb of anterior commissure" EXACT [FMA:61964] xref: FMA:61964 xref: NIF_GrossAnatomy:birnlex_977 is_a: UBERON:0002316 ! white matter of neuraxis is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter relationship: part_of UBERON:0000935 ! anterior commissure [Term] id: UBERON:0003044 name: uncinate fasciculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_983-FMA_77636 def: "." [Wikipedia:Uncinate_fasciculus] subset: uberon_slim synonym: "cerebral uncinate fasciculus" EXACT [FMA:77636] xref: FMA:77636 xref: NIF_GrossAnatomy:birnlex_983 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0003045 name: dorsal longitudinal fasciculus alt_id: UBERON:NIF_GrossAnatomy_birnlex_986-FMA_83845 def: "." [Wikipedia:Dorsal_longitudinal_fasciculus] subset: uberon_slim synonym: "bundle of Schutz" EXACT [FMA:83845] synonym: "bundle of schutz" EXACT [] synonym: "fasciculus of Schutz" EXACT [FMA:83845] synonym: "fasciculus of schutz" EXACT [] synonym: "posterior longitudinal fasciculus" EXACT [FMA:83845] xref: FMA:83845 xref: NIF_GrossAnatomy:birnlex_986 xref: ZFA:0005266 is_a: UBERON:0001019 ! fascicle [Term] id: UBERON:0003046 name: ventral acoustic stria alt_id: UBERON:NIF_GrossAnatomy_birnlex_991-FMA_72498 synonym: "anterior acoustic stria" EXACT [FMA:72498] xref: FMA:72498 xref: NIF_GrossAnatomy:birnlex_991 is_a: UBERON:0002316 ! white matter of neuraxis [Term] id: UBERON:0003047 name: regional part of pretectal region alt_id: UBERON:NIF_GrossAnatomy_birnlex_993-FMA_74519 synonym: "pretectal region segment" EXACT [FMA:74519] synonym: "segment of pretectal region" EXACT [NIF_GrossAnatomy:birnlex_993] xref: FMA:74519 xref: NIF_GrossAnatomy:birnlex_993 is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0002966 ! regional part of midbrain tectum intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001944 ! pretectal region [Term] id: UBERON:0003048 name: regional part of hypothalamus alt_id: UBERON:NIF_GrossAnatomy_birnlex_995-FMA_67706 synonym: "hypothalamus segment" EXACT [FMA:67706] synonym: "segment of hypothalamus" EXACT [NIF_GrossAnatomy:birnlex_995] xref: FMA:67706 xref: NIF_GrossAnatomy:birnlex_995 is_a: UBERON:0002784 ! regional part of diencephalon intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001898 ! hypothalamus [Term] id: UBERON:0003049 name: collagen and cuticulin-based cuticle alt_id: UBERON:WBbt_0005755 def: "A rigid external coating which is secreted by the hypodermis, seam and some transitional epithelial cells which covers the outer body, the major openings into the body cavity from the exterior, and two large sensory bristles, the male spicules. The cuticle of the spicules, the hook, and of some portions of the spicule channels is especially rigid and is probably sclerotized. Similar sclerotic features are occasionally noted in the ventral surface of the male tail fan. The main structural components of the nematode cuticle are proteins, highly cross-linked collagens and specialised insoluble proteins known as " [UBERON:cjm, WA:dh] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "nematode cuticle" RELATED [] xref: WBbt:0005755 is_a: UBERON:0001002 ! cuticle [Term] id: UBERON:0003050 name: olfactory placode alt_id: UBERON:XAO_0000005-ZFA_0000048 def: "A thick plate of cells derived from the neural ectoderm in the head region of the embryo that develops into the olfactory region of the nasal cavity." [NLM:olfactory+placode, Wikipedia:Olfactory_placode] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "nasal placode" RELATED [] xref: EHDAA:1504 xref: HOG:0000186 xref: TAO:0000048 xref: XAO:0000005 xref: ZFA:0000048 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0000005 ! chemosensory sensory organ [Term] id: UBERON:0003051 name: ear vesicle alt_id: UBERON:XAO_0000006-ZFA_0000051 def: "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)" [ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "otic capsule" RELATED [] synonym: "otic vesicle" RELATED [] synonym: "otocyst" RELATED [] synonym: "ov" RELATED [] xref: XAO:0000006 xref: ZFA:0000051 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0003052 name: midbrain-hindbrain boundary alt_id: UBERON:XAO_0000016-ZFA_0000042 def: "The part of the brain that is the morphological boundary between the midbrain and hindbrain and that is the location of an organizing center which patterns the midbrain and hindbrain primordia of the neural plate." [GO:0021555] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "isthmus" RELATED [] synonym: "MHB" EXACT [] synonym: "mhb" RELATED [] synonym: "midbrain hindbrain boundary" EXACT [] xref: HOG:0000649 xref: TAO:0000042 xref: XAO:0000016 xref: ZFA:0000042 is_a: UBERON:0000015 ! anatomical boundary relationship: part_of UBERON:0000955 ! brain relationship: part_of UBERON:0003075 ! neural plate [Term] id: UBERON:0003053 name: ventricular zone alt_id: UBERON:XAO_0000021-ZFA_0001083 comment: This class was created automatically from a combination of ontologies xref: BTO:0003654 xref: TAO:0001083 xref: XAO:0000021 xref: ZFA:0001083 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003054 name: roof plate alt_id: UBERON:XAO_0000022-ZFA_0007058 def: "Organizing center located at the dorsal midline of the neural tube that influences the development of the nervous system, controlling the specification and differentiation of dorsal neuronal cell types[XAO]. a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells[GO]. The thin layer of the embryonic neural tube that connects the lateral plates dorsally." [GO:0021509, http://medical-dictionary.thefreedictionary.com/roof+plate, PMID:15378040, Wikipedia:Roof_plate, XAO:0000022] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "alar lamina" RELATED [Wikipedia:Alar_lamina] synonym: "alar plate" RELATED [Wikipedia:Alar_plate] synonym: "roofplate" EXACT [] synonym: "spinal cord roof" RELATED [XAO:0000022] xref: EHDAA:1336 xref: EHDAA:1350 xref: EHDAA:1358 xref: EHDAA:1381 xref: EHDAA:1391 xref: EHDAA:1401 xref: EHDAA:1416 xref: EHDAA:1431 xref: EHDAA:1441 xref: EHDAA:1451 xref: EHDAA:1965 xref: EHDAA:1979 xref: EHDAA:1991 xref: EHDAA:2013 xref: EHDAA:2025 xref: EHDAA:2035 xref: EHDAA:2047 xref: EHDAA:2057 xref: EHDAA:2069 xref: EHDAA:2081 xref: EHDAA:2093 xref: EHDAA:2657 xref: EHDAA:2669 xref: EHDAA:2689 xref: EHDAA:2725 xref: EHDAA:2737 xref: EHDAA:2765 xref: EHDAA:2777 xref: EHDAA:2789 xref: EHDAA:2801 xref: EHDAA:2815 xref: EHDAA:2829 xref: EHDAA:2891 xref: EHDAA:3494 xref: EHDAA:3512 xref: EHDAA:3556 xref: EHDAA:3570 xref: EHDAA:3572 xref: EHDAA:3610 xref: EHDAA:3624 xref: EHDAA:3638 xref: EHDAA:3652 xref: EHDAA:3668 xref: EHDAA:3684 xref: EHDAA:3686 xref: EHDAA:3712 xref: EHDAA:5524 xref: EHDAA:5550 xref: EHDAA:7614 xref: EHDAA:864 xref: EHDAA:874 xref: EHDAA:884 xref: EHDAA:894 xref: EHDAA:916 xref: XAO:0000022 xref: ZFA:0007058 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0003055 name: outermost layer of epidermis alt_id: UBERON:XAO_0000029-ZFA_0001185 def: "Outermost layer of all layers of the epidermis[Uberon]. In fish: The outermost epidermal layer covering the fish at embryonic stages; derived from the EVL and thought to eventually be replaced by the superficial stratum of the epidermis[ZFA]." [ZFIN:curator] comment: This class is defined generically in terms of topology. See also Stratum corneum subset: uberon_slim synonym: "epidermis epithelial layer" RELATED [] synonym: "epidermis outer layer" RELATED [] synonym: "EVL" RELATED [] synonym: "periderm" RELATED [] xref: XAO:0000029 xref: ZFA:0001185 is_a: UBERON:0000483 ! epithelium relationship: part_of UBERON:0001003 ! epidermis [Term] id: UBERON:0003056 name: pre-chordal neural plate alt_id: UBERON:XAO_0000045-ZFA_0007016 def: "The portion of neural plate anterior to the mid-hindbrain junction." [XB:curator] comment: This class was created automatically from a combination of ontologies synonym: "anterior neural plate" RELATED [] xref: XAO:0000045 xref: ZFA:0007016 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0003075 ! neural plate [Term] id: UBERON:0003057 name: chordal neural plate alt_id: UBERON:XAO_0000046-ZFA_0007017 def: "The portion of neural plate posterior to the mid-hindbrain junction." [XB:curator] comment: This class was created automatically from a combination of ontologies synonym: "posterior neural plate" RELATED [] xref: XAO:0000046 xref: ZFA:0007017 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0003075 ! neural plate [Term] id: UBERON:0003058 name: hypochord alt_id: UBERON:XAO_0000056-ZFA_0000031 def: "Transient structure that lies immediately ventral to the notochord in the embryo, likely required for the formation of the dorsal aorta. A slight depression marks the future hypochord at NF stage 20 and its segregation from the dorsal endoderm begins at NF stage 24. It progresses from anterior to posterior and is complete by NF stage 28. At NF stage 32 it is present as a dorso-laterally flattened ribbon of yolk-laden cells. It degenerates by apoptosis and by NF stage 43 is no longer detectable as a distinct structure. // A transient rod-like structure which is endodermally derived and located immediately ventral to the notochord. The hypochord is thought to play a role in positioning the dorsal aorta. Eriksson and Lofberg, 2000." [ISBN:0815318960, PMID:10648245, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "subnotochordal rod" RELATED [] xref: AAO:0000733 xref: HOG:0000081 xref: TAO:0000031 xref: XAO:0000056 xref: ZFA:0000031 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000925 ! endoderm [Term] id: UBERON:0003059 name: presomitic mesoderm alt_id: UBERON:XAO_0000057-ZFA_0000279 def: "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "PSM" RELATED [] synonym: "segmental plate" EXACT [] synonym: "somitogenic mesoderm" RELATED [] xref: EFO:0001982 xref: HOG:0000559 xref: TAO:0000279 xref: XAO:0000057 xref: ZFA:0000279 is_a: UBERON:0000061 ! anatomical structure relationship: develops_from UBERON:0003077 ! paraxial mesoderm relationship: part_of UBERON:0003077 ! paraxial mesoderm [Term] id: UBERON:0003060 name: pronephric duct alt_id: UBERON:XAO_0000063-ZFA_0000150 def: "Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the cloacal chamber. Kimmel et al, 1995. Wingert et al have suggested that the pronephric duct as described traditionally may consist of subregions which are analogous to portions of the tubule segment of mammalian and other fish nephrons. Wingert, 2007." [Wikipedia:Pronephric_duct, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: ncithesaurus:Pronephric_Duct xref: TAO:0000150 xref: XAO:0000063 xref: ZFA:0000150 is_a: UBERON:0000058 ! duct relationship: part_of UBERON:0002120 ! pronephros [Term] id: UBERON:0003061 name: blood island alt_id: UBERON:XAO_0000067-ZFA_0000094 def: "Region located on the ventral surface of the developing embryo that is a site of hematopoiesis and that is analogous to the yolk sac blood islands of higher vertebrates. // Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension. Kimmel et al, 1995." [PMID:9618755, Wikipedia:Blood_island, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "blood islands" RELATED [] synonym: "caudal hematopoietic tissue" RELATED [] synonym: "posterior blood island" RELATED [] synonym: "posterior ICM" RELATED [] synonym: "VBI" RELATED [] synonym: "ventral blood island" RELATED [] synonym: "ventral lateral plate mesoderm" BROAD [] xref: EHDAA:170 xref: EHDAA:207 xref: HOG:0000085 xref: ncithesaurus:Blood_Island xref: TAO:0000094 xref: XAO:0000067 xref: ZFA:0000094 is_a: UBERON:0000061 ! anatomical structure relationship: develops_from UBERON:0003081 ! lateral plate mesoderm relationship: part_of UBERON:0002390 ! hematopoietic system [Term] id: UBERON:0003062 name: dorsal marginal zone alt_id: UBERON:XAO_0000072-ZFA_0000071 def: "." [Wikipedia:Regional_specification#Dorsal.2Fventral_axis_.26_organizer] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "organizer" RELATED [] synonym: "shield" EXACT [] synonym: "Spemann Mangold organizer" RELATED [] synonym: "Spemann's organizer" RELATED [] xref: TAO:0000071 xref: XAO:0000072 xref: ZFA:0000071 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002541 ! germ ring [Term] id: UBERON:0003063 name: prechordal plate alt_id: UBERON:XAO_0000079-ZFA_0000060 def: "Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region. Kimmel et al, 1995." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "head mesenchyme" BROAD [] synonym: "head mesoderm" BROAD [] xref: EHDAA:181 xref: HOG:0000086 xref: TAO:0000060 xref: XAO:0000079 xref: ZFA:0000060 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0003068 ! axial mesoderm [Term] id: UBERON:0003064 name: intermediate mesoderm alt_id: UBERON:XAO_0000085-ZFA_0001206 def: "The intermediate mesoderm is located between the lateral mesoderm and the paraxial mesoderm. It develops into the kidney and gonads." [GOC:curators, Wikipedia:Intermediate_mesoderm] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "IM" RELATED [] xref: HOG:0000087 xref: ncithesaurus:Intermediate_Mesoderm xref: TAO:0001206 xref: XAO:0000085 xref: ZFA:0001206 is_a: UBERON:0000061 ! anatomical structure relationship: adjacent_to UBERON:0003077 ! paraxial mesoderm relationship: adjacent_to UBERON:0003081 ! lateral plate mesoderm relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0000926 ! mesoderm [Term] id: UBERON:0003065 name: ciliary marginal zone alt_id: UBERON:XAO_0000086-ZFA_0001289 def: "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. Wehman et al, 2005." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "circumferential germinal zone" RELATED [] synonym: "CMZ" RELATED [] xref: HOG:0000088 xref: TAO:0001289 xref: XAO:0000086 xref: ZFA:0001289 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000966 ! retina [Term] id: UBERON:0003066 name: hyoid arch alt_id: UBERON:XAO_0000098-ZFA_0001276 def: "." [Wikipedia:Hyoid_arch] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "hyoid bars" RELATED [] synonym: "pharyngeal arch 2 skeleton" EXACT [] synonym: "second visceral arch" RELATED [] synonym: "ventral visceral arch 2" RELATED [] synonym: "visceral arch 2" RELATED [] xref: TAO:0001276 xref: XAO:0000098 xref: ZFA:0001276 is_a: UBERON:0002539 ! pharyngeal arch [Term] id: UBERON:0003067 name: dorsolateral placode alt_id: UBERON:XAO_0000187-ZFA_0001310 comment: This class was created automatically from a combination of ontologies synonym: "dorsolateral placodes" RELATED [] xref: HOG:0000103 xref: TAO:0001310 xref: XAO:0000187 xref: ZFA:0001310 is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0003068 name: axial mesoderm alt_id: UBERON:XAO_0000205-ZFA_0001204 def: "The axial mesoderm includes the prechordal mesoderm and the chordamesoderm. It gives rise to the prechordal plate and to the notochord." [] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: HOG:0000107 xref: TAO:0001204 xref: XAO:0000205 xref: ZFA:0001204 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0000926 ! mesoderm [Term] id: UBERON:0003069 name: otic placode alt_id: UBERON:XAO_0000223-ZFA_0000138 def: "Invagination of thickened epithelium near the hindbrain that gives rise to a spherically shaped ear vesicle. // Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the midsegmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)" [PMID:16217737, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "auditory placode" RELATED [] synonym: "otic capsule" RELATED [] synonym: "otocyst" RELATED [] xref: EHDAA:506 xref: HOG:0000235 xref: ncithesaurus:Otic_Placodes xref: TAO:0000138 xref: XAO:0000223 xref: ZFA:0000138 is_a: UBERON:0003067 ! dorsolateral placode relationship: part_of UBERON:0001690 ! ear [Term] id: UBERON:0003070 name: trigeminal placode alt_id: UBERON:XAO_0000225-ZFA_0000162 def: "The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period. Kimmel et al, 1995." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies xref: HOG:0000109 xref: TAO:0000162 xref: XAO:0000225 xref: ZFA:0000162 is_a: UBERON:0003067 ! dorsolateral placode relationship: develops_from UBERON:0003067 ! dorsolateral placode [Term] id: UBERON:0003071 name: eye primordium alt_id: UBERON:XAO_0000227-ZFA_0000570 def: "First trace of the future visual apparatus. The eye primordia forming antero-lateral evaginations of the closing neural tube are originally massive formations into which only a slit-shaped extension of the neural groove penetrates at NF stage 18. At NF stage 19 they clearly segregate from the anterior portion of the neural tube." [ISBN:0815318960] comment: This class was created automatically from a combination of ontologies synonym: "eye anlage" RELATED [] synonym: "eye field" RELATED [] synonym: "optic primordium" EXACT [] xref: TAO:0000570 xref: XAO:0000227 xref: ZFA:0000570 is_a: UBERON:0001048 ! primordium intersection_of: UBERON:0001048 ! primordium intersection_of: develops_into UBERON:0000970 ! eye relationship: develops_from UBERON:0003056 ! pre-chordal neural plate [Term] id: UBERON:0003072 name: eye vesicle alt_id: UBERON:XAO_0000228-ZFA_0001202 comment: This class was created automatically from a combination of ontologies synonym: "eye cup" RELATED [] synonym: "optic cup" RELATED [] xref: XAO:0000228 xref: ZFA:0001202 is_a: UBERON:0000481 ! multi-tissue structure relationship: develops_from UBERON:0003071 ! eye primordium relationship: part_of UBERON:0000970 ! eye [Term] id: UBERON:0003073 name: lens placode alt_id: UBERON:XAO_0000240-ZFA_0000122 def: "Ectodermal primordium of the lens of the eye. Kimmel et al, 1995." [Wikipedia:Lens_placode, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA:2908 xref: HOG:0000166 xref: ncithesaurus:Lens_Placodes xref: TAO:0000122 xref: XAO:0000240 xref: ZFA:0000122 is_a: UBERON:0001048 ! implied link automatically realized ! primordium intersection_of: UBERON:0001048 ! primordium intersection_of: develops_into UBERON:0000965 ! lens relationship: part_of UBERON:0000076 ! external ectoderm [Term] id: UBERON:0003074 name: mesonephric duct alt_id: UBERON:XAO_0000242-ZFA_0000546 def: "Paired organ that connects the primitive kidney Wolffian body (or mesonephros) to the cloaca and serves as the anlage for certain male reproductive organs. the Wolffian duct is what remains of the pronephric duct after the atrophy of the pronephros. -- wikipedia" [Wikipedia:Mesonephric_duct, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "archinephric duct" RELATED [Wikipedia:Wolffian_duct] synonym: "Leydig's duct" RELATED [Wikipedia:Wolffian_duct] synonym: "nephric duct" RELATED [] synonym: "renal duct" RELATED [] synonym: "Wolffian duct" RELATED [Wikipedia:Wolffian_duct] xref: EMAPA:16577 xref: ncithesaurus:Mesonephric_Duct xref: TAO:0000546 xref: XAO:0000242 xref: ZFA:0000546 is_a: UBERON:0000058 ! duct relationship: develops_from UBERON:0003060 ! pronephric duct relationship: part_of UBERON:0000080 ! mesonephros [Term] id: UBERON:0003075 name: neural plate alt_id: UBERON:XAO_0000249-ZFA_0000132 def: "A region of embryonic ectodermal cells that lie directly above the notochord. During neurulation, they change shape and produce an infolding of the neural plate (the neural fold) that then seals to form the neural tube. At NF stage 11.5 is the first indication of neural plate within the sensorial layer of ectoderm. It extends to near the animal pole by NF stage 12.5 and the entire plate is faintly delimited by NF stage 13. // The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium. Kimmel et al, 1995." [ISBN:0815318960, OMD:neural+plate, Wikipedia:Neural_plate, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "presumptive central nervous system" RELATED [] xref: BTO:0001765 xref: EHDAA:346 xref: EHDAA:902 xref: HOG:0000068 xref: ncithesaurus:Neural_Plate xref: TAO:0000132 xref: XAO:0000249 xref: ZFA:0000132 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0002346 ! neural ectoderm [Term] id: UBERON:0003076 name: posterior neural tube alt_id: UBERON:XAO_0000250-ZFA_0007037 comment: This class was created automatically from a combination of ontologies xref: HOG:0001383 xref: TAO:0007037 xref: XAO:0000250 xref: ZFA:0007037 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0003057 ! chordal neural plate relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0003077 name: paraxial mesoderm alt_id: UBERON:XAO_0000259-ZFA_0000255 def: "Area of mesoderm at either side of the midline embryonic notochord that, on segmentation, forms the paired somites. // Mesoderm which is lateral to the neural tube on both sides. //GO: The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube" [OMD:paraxial+mesoderm, Wikipedia:Paraxial_mesoderm, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "paraxial mesenchyme" RELATED [] xref: HOG:0000114 xref: ncithesaurus:Paraxial_Mesoderm xref: TAO:0000255 xref: XAO:0000259 xref: ZFA:0000255 is_a: UBERON:0003104 ! mesenchyme is_a: UBERON:0003313 ! implied link automatically realized ! mesenchyme of embryo relationship: part_of UBERON:0000926 ! mesoderm [Term] id: UBERON:0003078 name: epibranchial placode alt_id: UBERON:XAO_0000284-ZFA_0001294 comment: This class was created automatically from a combination of ontologies synonym: "epibranchial placodes" RELATED [] xref: HOG:0000117 xref: TAO:0001294 xref: XAO:0000284 xref: ZFA:0001294 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0003067 ! dorsolateral placode relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0003079 name: floor plate alt_id: UBERON:XAO_0000306-ZFA_0000022 def: "Organizing center consisting of a small group of cells located at the ventral midline of the neural tube that influences the development of the nervous system, governing the specification of neuronal cell types and directing axonal trajectories[]. a neural tube structure that separates the left and right components of the basal plate. Derived from the notochord during neurulation, it is a ventralizing structure, secreting and aiding in the development of the dorsal-ventral axis of the brainstem and spinal cord[WP]." [GO:0021508, PMID:15738958, Wikipedia:Floor_plate] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "flexural organ" RELATED [] synonym: "floorplate" EXACT [] synonym: "fp" RELATED [] synonym: "spinal cord floor" RELATED [] xref: BTO:0001720 xref: EHDAA:1375 xref: EHDAA:1385 xref: EHDAA:1395 xref: EHDAA:1410 xref: EHDAA:1425 xref: EHDAA:1435 xref: EHDAA:1445 xref: EHDAA:1955 xref: EHDAA:1975 xref: EHDAA:1985 xref: EHDAA:2005 xref: EHDAA:2017 xref: EHDAA:2029 xref: EHDAA:2039 xref: EHDAA:2051 xref: EHDAA:2061 xref: EHDAA:2073 xref: EHDAA:2085 xref: EHDAA:2651 xref: EHDAA:2663 xref: EHDAA:2675 xref: EHDAA:2717 xref: EHDAA:2729 xref: EHDAA:2757 xref: EHDAA:2769 xref: EHDAA:2781 xref: EHDAA:2793 xref: EHDAA:2805 xref: EHDAA:2819 xref: EHDAA:2871 xref: EHDAA:304 xref: EHDAA:312 xref: EHDAA:320 xref: EHDAA:328 xref: EHDAA:334 xref: EHDAA:340 xref: EHDAA:3480 xref: EHDAA:3498 xref: EHDAA:3520 xref: EHDAA:3546 xref: EHDAA:3560 xref: EHDAA:3576 xref: EHDAA:3600 xref: EHDAA:3614 xref: EHDAA:3628 xref: EHDAA:3642 xref: EHDAA:3656 xref: EHDAA:3672 xref: EHDAA:3698 xref: EHDAA:5500 xref: EHDAA:5528 xref: EHDAA:7590 xref: EHDAA:834 xref: EHDAA:842 xref: EHDAA:846 xref: EHDAA:858 xref: EHDAA:868 xref: EHDAA:878 xref: EHDAA:888 xref: EHDAA:910 xref: TAO:0000022 xref: XAO:0000306 xref: ZFA:0000022 is_a: UBERON:0002050 ! embryonic structure relationship: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0003080 name: anterior neural tube alt_id: UBERON:XAO_0000307-ZFA_0007038 comment: This class was created automatically from a combination of ontologies xref: HOG:0001384 xref: TAO:0007038 xref: XAO:0000307 xref: ZFA:0007038 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0003056 ! pre-chordal neural plate relationship: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0003081 name: lateral plate mesoderm alt_id: UBERON:XAO_0000311-ZFA_0000121 def: "." [Wikipedia:Lateral_plate_mesoderm] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "lateral mesoderm" EXACT [] synonym: "lateral plate" RELATED [] xref: HOG:0000118 xref: ncithesaurus:Lateral_Mesoderm xref: TAO:0000121 xref: TAO:0001065 xref: XAO:0000311 xref: ZFA:0000121 is_a: UBERON:0000061 ! anatomical structure relationship: develops_from UBERON:0000926 ! mesoderm relationship: part_of UBERON:0000926 ! mesoderm [Term] id: UBERON:0003082 name: myotome alt_id: UBERON:XAO_0000315-ZFA_0001056 def: "A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. // Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995." [PMID:17313522, Wikipedia:Myotome, ZFIN:curator] comment: The term "myotome" is also used to describe the muscles served by a single nerve root subset: uberon_slim synonym: "myomeres" RELATED [] synonym: "myotomes" RELATED [] xref: BTO:0000742 xref: EHDAA:1721 xref: EHDAA:1727 xref: EHDAA:1733 xref: EHDAA:1739 xref: HOG:0001244 xref: TAO:0001056 xref: XAO:0000315 xref: ZFA:0001056 is_a: UBERON:0001630 ! muscle organ is_a: UBERON:0001774 ! implied link automatically realized ! muscle of trunk relationship: develops_from UBERON:0002329 ! somite relationship: part_of UBERON:0002329 ! somite [Term] id: UBERON:0003083 name: trunk neural crest alt_id: UBERON:XAO_0000319-ZFA_0001024 def: "Trunk portion of the neural crest. The trunk neural crest lies between the vagal and sacral neural crest and gives rise to two groups of cells. One group migrates dorsolateral and populates the skin, forming pigment cells and the other migrates ventrolateral through the anterior sclerotome to become the epinephrine-producing cells of the adrenal gland and the neurons of the sympathetic nervous system. Some cells remain in the sclerotome to form the dorsal root ganglia [Wikipedia]." [ISBN:0815318960, Wikipedia:Trunk_neural_crest] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "trunk crest" RELATED [] xref: HOG:0000062 xref: TAO:0001024 xref: XAO:0000319 xref: ZFA:0001024 is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0002342 ! neural crest [Term] id: UBERON:0003084 name: fused heart primordium alt_id: UBERON:XAO_0000336-ZFA_0000028 def: "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. Stainier 2001." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "heart primordium" RELATED [] xref: XAO:0000336 xref: ZFA:0000028 is_a: UBERON:0001048 ! primordium relationship: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0003085 name: ventral aorta alt_id: UBERON:XAO_0000338-ZFA_0000604 def: "Outflow artery from the heart to the aortic arches. Kimmel et al, 1995." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: HOG:0000121 xref: TAO:0000604 xref: XAO:0000338 xref: ZFA:0000604 is_a: UBERON:0000947 ! aorta [Term] id: UBERON:0003086 name: caudal artery alt_id: UBERON:XAO_0000364-ZFA_0000011 def: "Extension of the dorsal aorta in the tail. Kimmel et al, 1995." [Wikipedia:Caudal_artery, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "CA" RELATED [] xref: HOG:0000123 xref: TAO:0000011 xref: XAO:0000364 xref: ZFA:0000011 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0003087 name: anterior cardinal vein alt_id: UBERON:XAO_0000383-ZFA_0000423 comment: This class was created automatically from a combination of ontologies synonym: "ACV" RELATED [] synonym: "rostral cardinal veins" RELATED [] xref: HOG:0000113 xref: ncithesaurus:Anterior_Cardinal_Vein xref: TAO:0000423 xref: XAO:0000383 xref: ZFA:0000423 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0003088 name: caudal vein alt_id: UBERON:XAO_0000390-ZFA_0000180 def: "Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterial cardinal vein in the posterior trunk. Kimmel et al, 1995." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "CV" RELATED [] xref: HOG:0000126 xref: TAO:0000180 xref: XAO:0000390 xref: ZFA:0000180 is_a: UBERON:0001638 ! vein [Term] id: UBERON:0003089 name: sclerotome alt_id: UBERON:XAO_0000397-ZFA_0001080 def: "Somitic compartment that is a precursor of the axial skeleton." [Wikipedia:Sclerotome, XB:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "sclerotomes" RELATED [] xref: EHDAA:1193 xref: EHDAA:1199 xref: EHDAA:1205 xref: EHDAA:1211 xref: EHDAA:1217 xref: EHDAA:1223 xref: EHDAA:1229 xref: EHDAA:1235 xref: EHDAA:1807 xref: EHDAA:1813 xref: EHDAA:1819 xref: EHDAA:1825 xref: EHDAA:1831 xref: EHDAA:1837 xref: EHDAA:1843 xref: EHDAA:1849 xref: EHDAA:1855 xref: EHDAA:2477 xref: EHDAA:2483 xref: EHDAA:2489 xref: EHDAA:2495 xref: EHDAA:2501 xref: EHDAA:2507 xref: EHDAA:2513 xref: EHDAA:2519 xref: EHDAA:2525 xref: EHDAA:2531 xref: EHDAA:674 xref: EHDAA:677 xref: EHDAA:680 xref: EHDAA:684 xref: EHDAA:703 xref: EHDAA:707 xref: EHDAA:711 xref: EHDAA:715 xref: EHDAA:719 xref: EHDAA:723 xref: EHDAA:727 xref: EHDAA:731 xref: HOG:0000680 xref: ncithesaurus:Sclerotome xref: TAO:0001080 xref: XAO:0000397 xref: ZFA:0001080 is_a: UBERON:0000061 ! anatomical structure relationship: develops_from UBERON:0002329 ! somite relationship: part_of UBERON:0002329 ! somite [Term] id: UBERON:0003090 name: supraorbital lateral line alt_id: UBERON:XAO_0000442-ZFA_0000443 def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: HOG:0000128 xref: TAO:0000443 xref: XAO:0000442 xref: ZFA:0000443 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0003091 name: thyroid primordium alt_id: UBERON:XAO_0000444-ZFA_0001081 comment: This class was created automatically from a combination of ontologies xref: ncithesaurus:Thyroid_Primordium xref: TAO:0001081 xref: XAO:0000444 xref: ZFA:0001081 is_a: UBERON:0001048 ! primordium relationship: develops_from UBERON:0001731 ! cavity of pharynx relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0003092 name: ultimobranchial body alt_id: UBERON:XAO_0000452-ZFA_0001448 def: "." [Wikipedia:Ultimobranchial_body] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA:2987 xref: EHDAA:9139 xref: GAID:1246 xref: HOG:0001185 xref: TAO:0001448 xref: XAO:0000452 xref: ZFA:0001448 is_a: UBERON:0000061 ! anatomical structure relationship: develops_from UBERON:0003117 ! pharyngeal arch 6 relationship: part_of UBERON:0000949 ! endocrine system [Term] id: UBERON:0003093 name: occipital lateral line alt_id: UBERON:XAO_0000458-ZFA_0000400 def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "supratemporal lateral line" RELATED [] xref: HOG:0000131 xref: TAO:0000400 xref: XAO:0000458 xref: ZFA:0000400 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0003094 name: infraorbital lateral line alt_id: UBERON:XAO_0000459-ZFA_0000524 def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: HOG:0000132 xref: TAO:0000524 xref: XAO:0000459 xref: ZFA:0000524 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0003095 name: dorsal lateral line alt_id: UBERON:XAO_0000462-ZFA_0005112 def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: TAO:0005112 xref: XAO:0000462 xref: ZFA:0005112 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0003096 name: middle lateral line alt_id: UBERON:XAO_0000463-ZFA_0000344 def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: HOG:0000133 xref: TAO:0000344 xref: XAO:0000463 xref: ZFA:0000344 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0002540 ! lateral line system [Term] id: UBERON:0003097 name: dorsal fin alt_id: UBERON:XAO_0000469-ZFA_0001173 def: "." [Wikipedia:Dorsal_fin] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: OpenCyc:Mx4rvVjbzZwpEbGdrcN5Y29ycA xref: TAO:0001173 xref: XAO:0000469 xref: ZFA:0001173 is_a: UBERON:0002534 ! fin relationship: develops_from UBERON:0003083 ! trunk neural crest [Term] id: UBERON:0003098 name: optic stalk alt_id: UBERON:XAO_0000475-ZFA_0000137 def: "." [Wikipedia:Optic_stalk] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: EHDAA:3816 xref: HOG:0000223 xref: ncithesaurus:Optic_Stalk xref: TAO:0000137 xref: XAO:0000475 xref: ZFA:0000137 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: develops_from UBERON:0003072 ! eye vesicle relationship: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003099 name: cranial neural crest alt_id: UBERON:XAO_0001001-ZFA_0001194 def: "Neural crest that is part of the head [ZFA].The cranial neural crest arises in the anterior and populates the face and the pharyngeal arches giving rise to bones, cartilage, nerves and connective tissue [Wikipedia]." [Wikipedia:Cranial_neural_crest, ZFA:0001194, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "head crest" RELATED [] xref: HOG:0000063 xref: TAO:0001194 xref: XAO:0001001 xref: ZFA:0001194 is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0002342 ! neural crest [Term] id: UBERON:0003100 name: female organism alt_id: UBERON:XAO_0003005-ZFA_0000303 def: "Gonochoristic organism that can produce female gametes. // Gonochoristic organism that can produce female gametes." [CARO:0000028, ZFIN:curator] comment: This class was created automatically from a combination of ontologies xref: BILA:0000028 xref: CARO:0000028 xref: FBbt:00007011 xref: HAO:0000028 xref: TAO:0000303 xref: XAO:0003005 xref: ZFA:0000303 is_a: UBERON:0000468 ! multi-cellular organism disjoint_from: UBERON:0003101 ! male organism [Term] id: UBERON:0003101 name: male organism alt_id: UBERON:XAO_0003006-ZFA_0000242 def: "Gonochoristic organism that can produce male gametes. // Gonochoristic organism that can produce male gametes." [CARO:0000027, ZFIN:curator] comment: This class was created automatically from a combination of ontologies xref: BILA:0000027 xref: CARO:0000027 xref: FBbt:00007004 xref: HAO:0000027 xref: TAO:0000242 xref: XAO:0003006 xref: ZFA:0000242 is_a: UBERON:0000468 ! multi-cellular organism [Term] id: UBERON:0003102 name: surface structure alt_id: UBERON:XAO_0003028-ZFA_0000292 def: "Organism subdivision that is the collection of anatomical structures on the body surface[ZFA]." [Wikipedia:Surface_structure, ZFA:0000292, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: TAO:0000292 xref: XAO:0003028 xref: ZFA:0000292 is_a: UBERON:0000475 ! organism subdivision relationship: develops_from UBERON:0000076 ! external ectoderm [Term] id: UBERON:0003103 name: compound organ alt_id: UBERON:XAO_0003041-ZFA_0000496 def: "Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types. // Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [CARO:0000024, ZFIN:curator] comment: This class was created automatically from a combination of ontologies synonym: "organ" RELATED [] xref: BILA:0000024 xref: CARO:0000024 xref: HAO:0000024 xref: TAO:0000496 xref: XAO:0003041 xref: ZFA:0000496 is_a: UBERON:0000062 ! organ [Term] id: UBERON:0003104 name: mesenchyme alt_id: UBERON:XAO_0003046-ZFA_0000393 def: "Portion of tissue consisting of loosely organized undifferentiated mesodermal cells that give rise to such structures as connective tissues, blood, lymphatics, bone, and cartilage. // A mesh-like cell arrangement, less compact than an epithelium. Kimmel et al, 1995." [BTO:0001393, Wikipedia:Mesenchyme, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim xref: BTO:0001393 xref: EHDAA:1094 xref: EHDAA:1677 xref: EHDAA:1703 xref: EHDAA:177 xref: EHDAA:205 xref: EHDAA:2362 xref: EHDAA:2910 xref: EHDAA:4170 xref: EHDAA:4176 xref: EHDAA:4184 xref: EHDAA:4190 xref: EHDAA:4200 xref: EHDAA:4782 xref: EHDAA:4788 xref: EHDAA:4794 xref: EHDAA:5012 xref: EHDAA:5149 xref: EHDAA:5157 xref: EHDAA:5163 xref: EHDAA:5169 xref: EHDAA:5175 xref: EHDAA:5200 xref: EHDAA:5208 xref: EHDAA:5873 xref: EHDAA:5879 xref: EHDAA:589 xref: EHDAA:601 xref: EHDAA:6102 xref: EHDAA:6108 xref: EHDAA:6118 xref: EHDAA:6128 xref: EHDAA:6138 xref: EHDAA:6152 xref: EHDAA:6158 xref: EHDAA:6164 xref: EHDAA:6170 xref: EHDAA:6172 xref: EHDAA:6182 xref: EHDAA:6188 xref: EHDAA:6194 xref: EHDAA:6204 xref: EHDAA:6216 xref: EHDAA:6222 xref: EHDAA:6232 xref: EHDAA:6238 xref: EHDAA:6248 xref: EHDAA:625 xref: EHDAA:6258 xref: EHDAA:6268 xref: EHDAA:6278 xref: EHDAA:6288 xref: EHDAA:6302 xref: EHDAA:6308 xref: EHDAA:6314 xref: EHDAA:6320 xref: EHDAA:6322 xref: EHDAA:6528 xref: EHDAA:6968 xref: EHDAA:7858 xref: EHDAA:7993 xref: EHDAA:8003 xref: EHDAA:8015 xref: EHDAA:8021 xref: EHDAA:8031 xref: EHDAA:8039 xref: EHDAA:8051 xref: EHDAA:8057 xref: EHDAA:8128 xref: EHDAA:8150 xref: EHDAA:8981 xref: EHDAA:9045 xref: EHDAA:9051 xref: EHDAA:9250 xref: EHDAA:9259 xref: EHDAA:9287 xref: HOG:0000170 xref: ncithesaurus:Mesenchyme xref: TAO:0000393 xref: XAO:0003046 xref: ZFA:0000393 is_a: UBERON:0000479 ! portion of tissue relationship: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0003105 name: dorsal lateral plate region alt_id: UBERON:XAO_0003051-ZFA_0005028 def: "Region located near the pronephros and pronephric ducts that is a site of hematopoiesis in the embryo. // Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf." [PMID:9618755, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "AGM" RELATED [] synonym: "AGM region" RELATED [] synonym: "aorta gonad mesonephros region" RELATED [] synonym: "aorta-gonads-mesonephros region" RELATED [] synonym: "DLP" EXACT [] synonym: "dlp" EXACT [] synonym: "ventral wall of dorsal aorta" EXACT [] xref: TAO:0005028 xref: XAO:0003051 xref: ZFA:0005028 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000947 ! aorta relationship: part_of UBERON:0002390 ! hematopoietic system relationship: part_of UBERON:0003081 ! lateral plate mesoderm [Term] id: UBERON:0003106 name: urostyle alt_id: UBERON:XAO_0003080-ZFA_0000158 def: "This centrum may be formed via the fusion of the terminal centrum and half-centrum. It is sometimes termed the 'ultimate' vertebra. Mabee and Bird, 2001." [ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "compound centrum" RELATED [] synonym: "last vertebra" RELATED [] synonym: "ultimate vertebra" RELATED [] xref: AAO:0000732 xref: TAO:0000158 xref: XAO:0003080 xref: ZFA:0000158 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0002090 ! axial skeleton [Term] id: UBERON:0003107 name: meckel's cartilage alt_id: UBERON:XAO_0003085-ZFA_0001205 def: "Paired cartilaginous component of the lower jaw that fuses together through a median inferior labial cartilage, resulting in a single curved bar of cartilage by metamorphic climax. During metamorphosis it is surrounded by the developing dentale and goniale. // Meckel's cartilage is the bilaterally paired, rod-like, cartilaginous ventral component of the lower jar, or ventral mandibular arch. It is typically resorbed in adults." [PMID:3693112, Wikipedia:Meckel's_cartilage, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "Meckel's cartilage" EXACT [] xref: AAO:0000289 xref: EHDAA:7997 xref: HOG:0000249 xref: MA:0001580 xref: TAO:0001205 xref: XAO:0003085 xref: ZFA:0001205 is_a: UBERON:0002418 ! cartilage relationship: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0003108 name: suspensorium alt_id: UBERON:XAO_0003086-ZFA_0000444 comment: This class was created automatically from a combination of ontologies synonym: "hyopalatine" RELATED [] synonym: "suspensoria" RELATED [] xref: AAO:0000596 xref: TAO:0000444 xref: XAO:0003086 xref: ZFA:0000444 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0003109 name: transverse process alt_id: UBERON:XAO_0003102-ZFA_0001362 def: "Parapophyses are lateral or ventrolateral projections of vertebrae to which ribs are attached in Danio rerio. Parapophyses can arise through replacement ossification of a basiventral or form directly in bone. They are separated from the centrum in basal teleosts, e.g., Leptolepis coryphaenoides, Megalops and Elops." [Wikipedia:Transverse_process, ZFIN:curator] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "lateral process of basiventral" RELATED [] synonym: "parapophysis" EXACT [] xref: AAO:0000698 xref: AAO:0000708 xref: TAO:0001362 xref: XAO:0003102 xref: ZFA:0001362 is_a: UBERON:0002513 ! endochondral bone relationship: part_of UBERON:0002090 ! axial skeleton [Term] id: UBERON:0003110 name: otic region alt_id: UBERON:ZFA_0000189-XAO_0003175 synonym: "cranial vault" RELATED [ZFA:0000189] xref: XAO:0003175 xref: ZFA:0000189 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0003111 name: sphenoid region alt_id: UBERON:ZFA_0000290-XAO_0003174 xref: XAO:0003174 xref: ZFA:0000290 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0003112 name: olfactory region alt_id: UBERON:ZFA_0000351-XAO_0003172 synonym: "ethmoid region" EXACT [ZFA:0000351] xref: XAO:0003172 xref: ZFA:0000351 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001703 ! neurocranium relationship: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0003113 name: dermal bone cranium alt_id: UBERON:ZFA_0000863-XAO_0003169 synonym: "dermatocranium" EXACT [ZFA:0000863] xref: XAO:0003169 xref: ZFA:0000863 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0000032 ! cranial structure [Term] id: UBERON:0003114 name: pharyngeal arch 3 alt_id: UBERON:ZFA_0001606-XAO_0000447 def: "." [Wikipedia:First_branchial_arch] subset: uberon_slim synonym: "branchial arch 1" EXACT [ZFA:0001606] synonym: "first branchial arch" EXACT [XAO:0000447] synonym: "gill arch 1" EXACT [ZFA:0001606] synonym: "third visceral arch" RELATED [XAO:0000447] synonym: "visceral arch 3" EXACT [ZFA:0001606] xref: XAO:0000447 xref: ZFA:0001606 is_a: UBERON:0002539 ! pharyngeal arch [Term] id: UBERON:0003115 name: pharyngeal arch 4 alt_id: UBERON:ZFA_0001607-XAO_0000449 def: "." [Wikipedia:Second_branchial_arch] subset: uberon_slim synonym: "branchial arch 2" EXACT [ZFA:0001607] synonym: "fourth visceral arch" RELATED [XAO:0000449] synonym: "gill arch 2" EXACT [ZFA:0001607] synonym: "second branchial arch" EXACT [XAO:0000449] synonym: "visceral arch 4" EXACT [ZFA:0001607] xref: XAO:0000449 xref: ZFA:0001607 is_a: UBERON:0002539 ! pharyngeal arch [Term] id: UBERON:0003116 name: pharyngeal arch 5 alt_id: UBERON:ZFA_0001608-XAO_0000451 synonym: "branchial arch 3" EXACT [ZFA:0001608] synonym: "fifth visceral arch" RELATED [XAO:0000451] synonym: "gill arch 3" EXACT [ZFA:0001608] synonym: "third branchial arch" EXACT [XAO:0000451] synonym: "visceral arch 5" EXACT [ZFA:0001608] xref: XAO:0000451 xref: ZFA:0001608 is_a: UBERON:0002539 ! pharyngeal arch [Term] id: UBERON:0003117 name: pharyngeal arch 6 alt_id: UBERON:ZFA_0001609-XAO_0000453 synonym: "branchial arch 4" EXACT [ZFA:0001609] synonym: "fourth branchial arch" EXACT [XAO:0000453] synonym: "gill arch 4" EXACT [ZFA:0001609] synonym: "sixth visceral arch" RELATED [XAO:0000453] synonym: "visceral arch 6" EXACT [ZFA:0001609] xref: XAO:0000453 xref: ZFA:0001609 is_a: UBERON:0002539 ! pharyngeal arch [Term] id: UBERON:0003118 name: aortic arch 1 alt_id: UBERON:ZFA_0005005-XAO_0000342 synonym: "AA1" EXACT [ZFA:0005005] synonym: "aa1" EXACT [] synonym: "first aortic arch" EXACT [XAO:0000342] synonym: "mandibular aortic arch" EXACT [ZFA:0005005] xref: HOG:0000149 xref: TAO:0005004 xref: XAO:0000342 xref: ZFA:0005005 is_a: UBERON:0001612 ! implied link automatically realized ! facial artery is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0001708 ! jaw [Term] id: UBERON:0003119 name: aortic arch 2 alt_id: UBERON:ZFA_0005006-XAO_0000343 synonym: "AA2" EXACT [ZFA:0005006] synonym: "aa2" EXACT [] synonym: "hyoid aortic arch" EXACT [ZFA:0005006] synonym: "second aortic arch" EXACT [XAO:0000343] xref: HOG:0000148 xref: XAO:0000343 xref: ZFA:0005006 is_a: UBERON:0001637 ! artery relationship: part_of UBERON:0003066 ! hyoid arch [Term] id: UBERON:0003120 name: aortic arch 3 alt_id: UBERON:ZFA_0005007-XAO_0000344 synonym: "AA3" EXACT [ZFA:0005007] synonym: "aa3" EXACT [] synonym: "third aortic arch" EXACT [XAO:0000344] xref: HOG:0000147 xref: XAO:0000344 xref: ZFA:0005007 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0003121 name: aortic arch 4 alt_id: UBERON:ZFA_0005008-XAO_0000355 synonym: "AA4" EXACT [ZFA:0005008] synonym: "aa4" EXACT [] synonym: "fourth aortic arch" EXACT [XAO:0000355] xref: HOG:0000146 xref: XAO:0000355 xref: ZFA:0005008 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0003122 name: aortic arch 5 alt_id: UBERON:ZFA_0005009-XAO_0000352 synonym: "AA5" EXACT [ZFA:0005009] synonym: "aa5" EXACT [] synonym: "fifth aortic arch" EXACT [XAO:0000352] xref: HOG:0000145 xref: XAO:0000352 xref: ZFA:0005009 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0003123 name: aortic arch 6 alt_id: UBERON:ZFA_0005016-XAO_0000353 synonym: "AA6" EXACT [ZFA:0005016] synonym: "aa6" EXACT [] synonym: "sixth aortic arch" EXACT [XAO:0000353] xref: HOG:0000144 xref: XAO:0000353 xref: ZFA:0005016 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0003124 name: chorion def: "Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo [ZFA]. The outer membrane of the two membranes enclosing the embryo in reptiles, birds, and mammals. In placental mammals it contributes to the development of the placenta[BTO]. Wikipedia: The chorion is one of the membranes that exists during pregnancy between the developing fetus and mother. It is formed by extraembryonic mesoderm and the two layers of trophoblast and surrounds the embryo and other membranes. The chorionic villi emerge from the chorion, invade the endometrium, and allow transfer of nutrients from maternal blood to fetal blood." [ZFA:0000020] subset: uberon_slim synonym: "chorion (vertebrates)" EXACT [] xref: BTO:0000252 xref: EHDAA:150 xref: FMA:80224 xref: GAID:1299 xref: HOG:0000200 xref: ncithesaurus:Chorion is_a: UBERON:0000478 ! extraembryonic structure relationship: adjacent_to UBERON:0000922 ! embryo relationship: part_of UBERON:0000992 ! ovary [Term] id: UBERON:0003125 name: vitelline membrane def: "a structure directly adjacent to the outer surface of the plasma membrane of an ovum. It is composed mostly of protein fibers, with protein receptors needed for sperm binding, binding to sperm plasma membrane receptors. The species-specificity between these receptors contributes to prevention of breeding between different species [Wikipedia]. A protective layer around the egg[FBbt]." [Wikipedia:Vitelline_membrane] synonym: "zona pellucida" RELATED [] xref: BTO:0001450 xref: FBbt:00000042 xref: GAID:1318 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003126 name: vertebrate trachea def: "A trachea held open by up to 20 C-shaped rings of cartilage [Wikipedia]. The trachea is the portion of the airway that attaches to the bronchi as it branches [GO:dph]." [GO:0060438, Wikipedia:Vertebrate_trachea] subset: uberon_slim synonym: "cartilaginous trachea" EXACT [] synonym: "Windpipe" EXACT [] synonym: "windpipe" EXACT [] xref: BTO:0001388 xref: EFO:0000935 xref: EHDAA:3078 xref: FMA:7394 xref: GAID:361 xref: HOG:0000371 xref: MA:0000441 xref: MAT:0000137 xref: MIAA:0000137 xref: XAO:0000118 is_a: UBERON:0001005 ! trachea relationship: part_of UBERON:0001558 ! lower respiratory tract relationship: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0003127 name: invertebrate trachea def: "A trachea composed of composed of spiracles, tracheae, and tracheoles [Wikipedia]. An open tracheal system is a respiratory system, a branched network of epithelial tubes that supplies oxygen to target tissues via spiracles. An example of this is found in Drosophila melanogaster." [GO:0007424, Wikipedia:Invertebrate_trachea] comment: TODO: system vs organ part subset: uberon_slim synonym: "open tracheal system" EXACT [] xref: FBbt:00005043 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0001005 ! trachea [Term] id: UBERON:0003128 name: cranium def: "Upper portion of the skull." [Wikipedia:Cranium_(anatomy)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "chondrocranium" RELATED [] synonym: "cranial bone" RELATED [] synonym: "cranial skeleton" RELATED [] synonym: "craniofacial bone" RELATED [] synonym: "epicranial plate" RELATED [] synonym: "skeletal system of head" RELATED [] xref: BILA:0000115 xref: BTO:0001295 xref: EFO:0000831 xref: EHDAA:6029 xref: HOG:0000334 xref: MA:0000316 xref: MAT:0000340 xref: MIAA:0000340 xref: NIF_GrossAnatomy:birnlex_1230 xref: OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA xref: TAO:0000737 xref: ZFA:0000737 is_a: UBERON:0000032 ! cranial structure relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0003129 name: skull def: "Bony structure that is part of the head consisting of cranium and mandible." [Wikipedia:Skull] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "chondrocranium" RELATED [] synonym: "cranial bone" RELATED [] synonym: "cranial skeleton" RELATED [] synonym: "craniofacial bone" RELATED [] synonym: "epicranial plate" RELATED [] synonym: "skeletal system of head" RELATED [] synonym: "skull" RELATED [] synonym: "skull bone" RELATED [] xref: EFO:0000831 xref: FMA:46565 xref: ncithesaurus:Skull is_a: UBERON:0000032 ! cranial structure relationship: has_part UBERON:0001684 ! mandible relationship: has_part UBERON:0003128 ! cranium [Term] id: UBERON:0003130 name: arthropod sternum alt_id: UBERON:FBbt_00004557-FMA_7485-MA_0001331 def: "ventral portion of a segment of an arthropod thorax or abdomen. In insects, the sterna are usually single, large sclerites, and external. However, they can sometimes be divided in two or more, in which case the subunits are called sternites, and may also be modified on the terminal abdominal segments so as to form part of the functional genitalia, in which case they are frequently reduced in size and development, and may become internalized and/or membranous." [Wikipedia:Sternum_(arthropod)] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "sternum" BROAD [] xref: FBbt:00004557 xref: HAO:0000956 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000915 ! thorax [Term] id: UBERON:0003131 name: arthropod tibia def: "A section of the arthropod leg." [Wikipedia:Arthropod_leg] comment: Homologies of leg segments between groups are difficult to prove and are the source of much argument. Some authors posit up to eleven segments per leg for the most recent common ancestor of extant arthropods [1], but modern arthropods have eight or fewer. It has been argued [2][3] that the ancestral leg need not have been so complex, and that other events, such as the successive loss of function of a Hox-gene could result in parallel gains of leg segments. subset: uberon_slim synonym: "shankbone" EXACT [Wikipedia:Tibia] synonym: "shinbone" EXACT [Wikipedia:Tibia] synonym: "Tibia" EXACT [] xref: FBbt:00004642 xref: HAO:0001017 xref: ncithesaurus:Tibia is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0003132 name: arthropod hypopharynx def: "A median tonguelike structure arising from the mouth." [http://www.britannica.com/EBchecked/topic/279974/hypopharynx] subset: uberon_slim xref: FBbt:00005751 xref: HAO:0000409 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001042 ! pharynx [Term] id: UBERON:0003133 name: reproductive organ def: "An organ involved in reproduction" [UBERON:xp] synonym: "reproductive system organ" EXACT [] synonym: "sex organ" EXACT [] xref: MA:0001752 is_a: UBERON:0000062 ! organ [Term] id: UBERON:0003134 name: female reproductive organ def: "A female organ involved in reproduction" [UBERON:xp] synonym: "female reproductive system organ" EXACT [] synonym: "female sex organ" EXACT [] is_a: UBERON:0003133 ! reproductive organ intersection_of: UBERON:0003133 ! reproductive organ intersection_of: part_of UBERON:0003100 ! female organism [Term] id: UBERON:0003135 name: male reproductive organ def: "A male organ involved in reproduction" [UBERON:xp] synonym: "male reproductive system organ" EXACT [] synonym: "male sex organ" EXACT [] is_a: UBERON:0003133 ! reproductive organ intersection_of: UBERON:0003133 ! reproductive organ intersection_of: part_of UBERON:0003101 ! male organism [Term] id: UBERON:0003136 name: tagma alt_id: UBERON:FBbt_00000002-HAO_0000988 xref: FBbt:00000002 xref: HAO:0000988 is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0003137 name: antennal segment alt_id: UBERON:FBbt_00000009-HAO_0000104 xref: FBbt:00000009 xref: HAO:0000104 is_a: UBERON:0000914 ! segment [Term] id: UBERON:0003138 name: thoracic segment alt_id: UBERON:FBbt_00000016-HAO_0001013 xref: FBbt:00000016 xref: HAO:0001013 is_a: UBERON:0000914 ! segment relationship: part_of UBERON:0000915 ! thorax [Term] id: UBERON:0003139 name: larval tagma alt_id: UBERON:FBbt_00001728-HAO_0000462 xref: FBbt:00001728 xref: HAO:0000462 is_a: UBERON:0000475 ! organism subdivision relationship: part_of UBERON:0002548 ! larva [Term] id: UBERON:0003140 name: larval thorax alt_id: UBERON:FBbt_00001741-HAO_0000463 xref: FBbt:00001741 xref: HAO:0000463 is_a: UBERON:0000915 ! thorax [Term] id: UBERON:0003141 name: larval abdomen alt_id: UBERON:FBbt_00001746-HAO_0000460 xref: FBbt:00001746 xref: HAO:0000460 is_a: UBERON:0000916 ! abdomen [Term] id: UBERON:0003142 name: prepupa alt_id: UBERON:FBbt_00002952-HAO_0000812 synonym: "PP" RELATED [FBbt:00002952] xref: BTO:0001110 xref: FBbt:00002952 xref: HAO:0000812 is_a: UBERON:0000468 ! multi-cellular organism relationship: develops_from UBERON:0002548 ! larva [Term] id: UBERON:0003143 name: pupa alt_id: UBERON:FBbt_00002953-HAO_0000886 synonym: "P" RELATED [FBbt:00002953] xref: BTO:0001143 xref: EFO:0002684 xref: FBbt:00002953 xref: HAO:0000886 is_a: UBERON:0000468 ! multi-cellular organism relationship: existence_starts_and_ends_during UBERON:0000070 ! pupal stage [Term] id: UBERON:0003144 name: adult tagma alt_id: UBERON:FBbt_00003005-HAO_0000089 xref: FBbt:00003005 xref: HAO:0000089 is_a: UBERON:0000475 ! organism subdivision [Term] id: UBERON:0003145 name: adult thorax alt_id: UBERON:FBbt_00003018-HAO_0000090 xref: FBbt:00003018 xref: HAO:0000090 is_a: UBERON:0000915 ! thorax [Term] id: UBERON:0003146 name: adult abdomen alt_id: UBERON:FBbt_00003023-HAO_0000088 xref: FBbt:00003023 xref: HAO:0000088 is_a: UBERON:0000916 ! abdomen [Term] id: UBERON:0003147 name: peritreme alt_id: UBERON:FBbt_00003121-HAO_0000712 synonym: "rim" RELATED [FBbt:00003121] xref: FBbt:00003121 xref: HAO:0000712 is_a: UBERON:0000466 ! immaterial anatomical entity [Term] id: UBERON:0003148 name: sclerite alt_id: UBERON:FBbt_00004475-HAO_0000909 synonym: "plate" RELATED [FBbt:00004475] xref: FBbt:00004475 xref: HAO:0000909 is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0003149 name: tergite alt_id: UBERON:FBbt_00004476-HAO_0001005 comment: DV with CARO synonym: "abdominal tergite" EXACT [FBbt:00004476] xref: FBbt:00004476 xref: HAO:0001005 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0003150 name: sternite alt_id: UBERON:FBbt_00004477-HAO_0000955 comment: DV with CARO synonym: "abdominal sternite" EXACT [FBbt:00004477] xref: FBbt:00004477 xref: HAO:0000955 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0003151 name: foramen alt_id: UBERON:FBbt_00004478-HAO_0000345 xref: FBbt:00004478 xref: HAO:0000345 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0003152 name: phragma alt_id: UBERON:FBbt_00004480-HAO_0000716 def: "The lamella that serves as the site of attachment of the longitudinal flight muscle [HAO]." [HAO:0000716] xref: FBbt:00004480 xref: HAO:0000716 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003153 name: head capsule alt_id: UBERON:FBbt_00004482-HAO_0000398 xref: EFO:0001927 xref: FBbt:00004482 xref: HAO:0000398 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0003154 name: gena alt_id: UBERON:FBbt_00004491-HAO_0000371 synonym: "cheek" RELATED [FBbt:00004491] xref: FBbt:00004491 xref: HAO:0000371 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003155 name: occiput alt_id: UBERON:FBbt_00004492-HAO_0000658 xref: FBbt:00004492 xref: HAO:0000658 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003156 name: postocciput alt_id: UBERON:FBbt_00004494-HAO_0000790 xref: FBbt:00004494 xref: HAO:0000790 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003157 name: postgena alt_id: UBERON:FBbt_00004496-HAO_0000776 xref: FBbt:00004496 xref: HAO:0000776 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003158 name: tentorial pit alt_id: UBERON:FBbt_00004501-HAO_0000999 xref: FBbt:00004501 xref: HAO:0000999 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003159 name: anterior tentorial pit alt_id: UBERON:FBbt_00004502-HAO_0000126 xref: FBbt:00004502 xref: HAO:0000126 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003160 name: posterior tentorial pit alt_id: UBERON:FBbt_00004503-HAO_0000768 xref: FBbt:00004503 xref: HAO:0000768 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003161 name: dorsal ocellus alt_id: UBERON:FBbt_00004505-HAO_0000661 def: "A simple visual organ of insects[GO]. Two ocelli appear on the vertical and one on the frontal plate[FBbt]. The multi-tissue structure that is located on the top of the head, composed of the corneal lens, pigment cell, rhabdoms and synaptic plexus[HAO]. Two evolutionary distinct ocellus types exist [2]: dorsal ocelli (or simply 'ocelli'), found in most insects, and lateral ocelli (or stemmata), which are found in the larvae of some insect orders. They are structurally and functionally very different. Simple eyes of other animals, e.g. cnidarians may also be referred to as 'ocelli', but again the structure and anatomy of these eyes is quite distinct from those of the dorsal ocelli of insects[Wikipedia]." [FBbt:00004505, GO:0008056, HAO:0000661, Wikipedia:Ocellus#Ocelli] comment: DV with CARO synonym: "dorsal ocelli" RELATED PLURAL [] synonym: "ocelli" RELATED PLURAL [] synonym: "ocellus" EXACT [] xref: BTO:0001758 xref: FBbt:00004505 xref: HAO:0000661 is_a: UBERON:0000481 ! multi-tissue structure is_a: UBERON:0000963 ! head sensillum [Term] id: UBERON:0003162 name: lateral ocellus alt_id: UBERON:FBbt_00004506-HAO_0000481 def: "The ocellus that is paired[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000481, Wikipedia:Ocellus#Ocelli] xref: FBbt:00004506 xref: HAO:0000481 is_a: UBERON:0003161 ! dorsal ocellus [Term] id: UBERON:0003163 name: mouthpart alt_id: UBERON:FBbt_00004520-HAO_0000639 comment: TODO xref: FBbt:00004520 xref: HAO:0000639 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0003164 name: clypeus alt_id: UBERON:FBbt_00004521-HAO_0000212 xref: FBbt:00004521 xref: HAO:0000212 is_a: UBERON:0000466 ! immaterial anatomical entity [Term] id: UBERON:0003165 name: cibarium alt_id: UBERON:FBbt_00004526-HAO_0000201 synonym: "atrium" RELATED [FBbt:00004526] xref: FBbt:00004526 xref: HAO:0000201 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0003166 name: prementum alt_id: UBERON:FBbt_00004534-HAO_0000804 synonym: "theca" RELATED [FBbt:00004534] xref: FBbt:00004534 xref: HAO:0000804 is_a: UBERON:0000914 ! segment [Term] id: UBERON:0003167 name: lacinia alt_id: UBERON:FBbt_00004536-HAO_0000457 xref: FBbt:00004536 xref: HAO:0000457 is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0003168 name: mentum alt_id: UBERON:FBbt_00004544-HAO_0000534 xref: FBbt:00004544 xref: HAO:0000534 is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0003169 name: cervical sclerite alt_id: UBERON:FBbt_00004548-HAO_0000195 comment: DV with CARO xref: FBbt:00004548 xref: HAO:0000195 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0003170 name: tergum alt_id: UBERON:FBbt_00004552-HAO_0001006 xref: FBbt:00004552 xref: HAO:0001006 is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0003171 name: episternum alt_id: UBERON:FBbt_00004554-HAO_0000303 xref: FBbt:00004554 xref: HAO:0000303 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003172 name: epimeron alt_id: UBERON:FBbt_00004556-HAO_0000299 xref: FBbt:00004556 xref: HAO:0000299 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003173 name: pronotum alt_id: UBERON:FBbt_00004561-HAO_0000853 xref: FBbt:00004561 xref: HAO:0000853 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0003174 name: furcasternum alt_id: UBERON:FBbt_00004570-HAO_0000367 xref: FBbt:00004570 xref: HAO:0000367 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003175 name: prescutum alt_id: UBERON:FBbt_00004582-HAO_0000815 xref: FBbt:00004582 xref: HAO:0000815 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003176 name: anterior notal wing process alt_id: UBERON:FBbt_00004585-HAO_0000120 xref: FBbt:00004585 xref: HAO:0000120 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003177 name: posterior notal wing process alt_id: UBERON:FBbt_00004586-HAO_0000758 xref: FBbt:00004586 xref: HAO:0000758 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003178 name: postnotum alt_id: UBERON:FBbt_00004588-HAO_0000786 synonym: "postscutellum" RELATED [FBbt:00004588] xref: FBbt:00004588 xref: HAO:0000786 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003179 name: pleural wing process alt_id: UBERON:FBbt_00004595-HAO_0000726 xref: FBbt:00004595 xref: HAO:0000726 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003180 name: anepisternum alt_id: UBERON:FBbt_00004597-HAO_0000094 synonym: "mesopleurite" RELATED [FBbt:00004597] xref: FBbt:00004597 xref: HAO:0000094 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003181 name: scutoscutellar suture alt_id: UBERON:FBbt_00004601-HAO_0000920 xref: FBbt:00004601 xref: HAO:0000920 is_a: UBERON:0000969 ! suture [Term] id: UBERON:0003182 name: pleural suture alt_id: UBERON:FBbt_00004603-HAO_0000725 xref: FBbt:00004603 xref: HAO:0000725 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000969 ! suture [Term] id: UBERON:0003183 name: notopleural suture alt_id: UBERON:FBbt_00004604-HAO_0000649 xref: FBbt:00004604 xref: HAO:0000649 is_a: UBERON:0000969 ! suture [Term] id: UBERON:0003184 name: mesofurca alt_id: UBERON:FBbt_00004619-HAO_0000547 synonym: "mesothoracic sternal apophysis" RELATED [FBbt:00004619] xref: FBbt:00004619 xref: HAO:0000547 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0003185 name: metafurca alt_id: UBERON:FBbt_00004638-HAO_0000592 synonym: "metathoracic sternal apophysis" RELATED [FBbt:00004638] xref: FBbt:00004638 xref: HAO:0000592 is_a: UBERON:0000061 ! anatomical structure is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0003186 name: coxa alt_id: UBERON:FBbt_00004641-HAO_0000228 xref: FBbt:00004641 xref: HAO:0000228 is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0000914 ! segment is_a: UBERON:0002529 ! implied link automatically realized ! limb segment relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0003187 name: pretarsus alt_id: UBERON:FBbt_00004653-HAO_0000820 xref: FBbt:00004653 xref: HAO:0000820 is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0000914 ! segment is_a: UBERON:0002529 ! implied link automatically realized ! limb segment relationship: part_of UBERON:0000978 ! leg [Term] id: UBERON:0003188 name: auxilia alt_id: UBERON:FBbt_00004654-HAO_0000153 xref: FBbt:00004654 xref: HAO:0000153 is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0003189 name: unguitractor plate alt_id: UBERON:FBbt_00004658-HAO_0001043 comment: DV with CARO xref: FBbt:00004658 xref: HAO:0001043 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0003190 name: empodium alt_id: UBERON:FBbt_00004659-HAO_0000288 xref: FBbt:00004659 xref: HAO:0000288 is_a: UBERON:0000466 ! immaterial anatomical entity [Term] id: UBERON:0003191 name: tegula alt_id: UBERON:FBbt_00004730-HAO_0000993 xref: FBbt:00004730 xref: HAO:0000993 is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0000984 ! thoracic wing [Term] id: UBERON:0003192 name: axillary sclerite alt_id: UBERON:FBbt_00004737-HAO_0000159 comment: DV with CARO xref: FBbt:00004737 xref: HAO:0000159 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0003193 name: axillary cord alt_id: UBERON:FBbt_00004744-HAO_0000157 xref: FBbt:00004744 xref: HAO:0000157 is_a: UBERON:0000476 ! acellular anatomical structure [Term] id: UBERON:0003194 name: wing vein alt_id: UBERON:FBbt_00004751-HAO_0001095 xref: FBbt:00004751 xref: HAO:0001095 is_a: UBERON:0000476 ! acellular anatomical structure is_a: UBERON:0001638 ! implied link automatically realized ! vein intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0000023 ! wing [Term] id: UBERON:0003195 name: crossvein alt_id: UBERON:FBbt_00004765-HAO_0000236 xref: FBbt:00004765 xref: HAO:0000236 is_a: UBERON:0000476 ! acellular anatomical structure [Term] id: UBERON:0003196 name: wing cell alt_id: UBERON:FBbt_00004769-HAO_0001091 synonym: "intervein" RELATED [FBbt:00004769] xref: FBbt:00004769 xref: HAO:0001091 is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0003197 name: costal cell alt_id: UBERON:FBbt_00004770-HAO_0000226 xref: FBbt:00004770 xref: HAO:0000226 is_a: UBERON:0000479 ! portion of tissue [Term] id: UBERON:0003198 name: aedeagus alt_id: UBERON:FBbt_00004850-HAO_0000091 xref: FBbt:00004850 xref: HAO:0000091 is_a: UBERON:0000472 ! simple organ [Term] id: UBERON:0003199 name: egg chamber alt_id: UBERON:FBbt_00004894-HAO_0000287 synonym: "follicle" RELATED [FBbt:00004894] synonym: "germarium derived egg chamber" EXACT [FBbt:00004894] xref: FBbt:00004894 xref: HAO:0000287 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0003200 name: pedicel alt_id: UBERON:FBbt_00004920-HAO_0000706 xref: FBbt:00004920 xref: HAO:0000706 is_obsolete: true [Term] id: UBERON:0003201 name: exocuticle alt_id: UBERON:FBbt_00004973-HAO_0000311 xref: BTO:0001602 xref: FBbt:00004973 xref: HAO:0000311 is_a: UBERON:0000476 ! acellular anatomical structure [Term] id: UBERON:0003202 name: endocuticle alt_id: UBERON:FBbt_00004974-HAO_0000290 xref: BTO:0001603 xref: FBbt:00004974 xref: HAO:0000290 is_a: UBERON:0000476 ! acellular anatomical structure [Term] id: UBERON:0003203 name: apodeme alt_id: UBERON:FBbt_00005091-HAO_0000142 xref: FBbt:00005091 xref: HAO:0000142 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003204 name: epipharynx alt_id: UBERON:FBbt_00005750-HAO_0000301 xref: FBbt:00005750 xref: HAO:0000301 is_a: UBERON:0000481 ! multi-tissue structure relationship: part_of UBERON:0001041 ! foregut [Term] id: UBERON:0003205 name: articulation alt_id: UBERON:FBbt_00005811-HAO_0000151 xref: FBbt:00005811 xref: HAO:0000151 xref: ncithesaurus:Articulation is_a: UBERON:0000477 ! anatomical cluster [Term] id: UBERON:0003206 name: apophysis alt_id: UBERON:FBbt_00005813-HAO_0000143 xref: FBbt:00005813 xref: FMA:75428 xref: HAO:0000143 is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003207 name: appendage segment alt_id: UBERON:FBbt_00007018-HAO_0000145 xref: FBbt:00007018 xref: HAO:0000145 is_a: UBERON:0000475 ! organism subdivision is_a: UBERON:0000914 ! segment [Term] id: UBERON:0003209 name: blood nerve barrier def: "barrier between the perineurium of peripheral nerves and the vascular endothelium of endoneurial capillaries. The perineurium acts as a diffusion barrier, but ion permeability at the blood-nerve barrier is still higher than at the blood-brain barrier[GO]." [GO:0008065, Wikipedia:Blood-nerve_barrier] synonym: "blood-nerve barrier" EXACT [] is_a: UBERON:0000119 ! cell layer relationship: adjacent_to UBERON:0000179 ! haemolymphatic fluid relationship: adjacent_to UBERON:0001021 ! nerve [Term] id: UBERON:0003210 name: blood-cerebrospinal fluid barrier def: "barrier in the choroid plexus located in the lateral, third, and fourth brain ventricles that controls the entrance of substances into the cerebrospinal fluid from the blood[MP]." [MP:0006088] is_a: UBERON:0000119 ! cell layer relationship: adjacent_to UBERON:0000178 ! blood relationship: adjacent_to UBERON:0001359 ! cerebrospinal fluid [Term] id: UBERON:0003211 name: median ocellus def: "The ocellus that is is located medially on the cranium[HAO]. The number, form, and function of the dorsal ocelli varies markedly throughout insect orders. They tend to be larger and more strongly expressed in flying insects (particularly bees, wasps, dragonflies and locusts), where they are typically found as a triplet. Two lateral ocelli are directed to the left and right of the head respectively, while a central (median) ocellus is directed frontally. In some terrestrial insects (e.g. some ants and cockroaches), only two lateral ocelli are present: the median ocellus is absent. Note that the unfortunately labelled 'lateral ocelli' here refers to the sideways facing position of the ocelli, which are of the dorsal type. They should not be confused with the lateral ocelli of some insect larvae (see stemmata)[Wikipedia]." [HAO:0000526, Wikipedia:Ocellus#Ocelli] xref: FBbt:00004507 xref: HAO:0000526 is_a: UBERON:0003161 ! dorsal ocellus [Term] id: UBERON:0003212 name: gustatory organ synonym: "taste organ" EXACT [] xref: FBbt:00005159 xref: FMA:77853 is_a: UBERON:0000005 ! chemosensory sensory organ intersection_of: UBERON:0000062 ! organ intersection_of: part_of UBERON:0001033 ! gustatory system relationship: part_of UBERON:0001033 ! gustatory system [Term] id: UBERON:0003213 name: cranial ganglion alt_id: UBERON:MA_0000184-MA_0000214-MIAA_0000200-WBbt_0005135-ZFA_0000013 def: "Ganglion which is located in the head." [ZFIN:curator] subset: uberon_slim synonym: "cranial ganglia" RELATED [] synonym: "cranial ganglion" EXACT [] synonym: "head ganglion" RELATED [] xref: BTO:0000106 xref: EFO:0000902 xref: HOG:0000076 xref: MA:0000214 xref: MAT:0000200 xref: MIAA:0000200 xref: TAO:0000013 xref: WBbt:0005135 xref: XAO:0000027 xref: ZFA:0000013 is_a: UBERON:0000045 ! ganglion relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0003214 name: mammary gland alveolus def: "a sac-like structure that is found in the mature gland[GO]." [GO:0060749] synonym: "lactiferous alveolus" EXACT [] synonym: "lactiferous gland alveolus" EXACT [] synonym: "mammary alveolus" EXACT [] xref: FMA:73285 xref: MA:0002760 is_a: UBERON:0003215 ! alveolus intersection_of: UBERON:0003215 ! alveolus intersection_of: part_of UBERON:0001911 ! lactiferous gland relationship: part_of UBERON:0001911 ! lactiferous gland [Term] id: UBERON:0003215 name: alveolus def: "organ part that has the form of a hollow cavity[WP]." [Wikipedia:Alveolus] xref: EFO:0002513 xref: FMA:82493 xref: ncithesaurus:Alveolus is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0003216 name: hard palate alt_id: UBERON:FMA_54549-FMA_55023-MA_0002476-MA_0002477-MIAA_0000161 def: "anterior portion of the palate consisting of bone and mucous membranes[GO]." [GO:0060022, Wikipedia:Hard_palate] comment: This class was created automatically from a combination of ontologies subset: uberon_slim synonym: "hard palate" EXACT [] xref: FMA:55023 xref: GAID:221 xref: MA:0002477 xref: MAT:0000161 xref: MIAA:0000161 xref: ncithesaurus:Hard_Palate is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0001716 ! palate [Term] id: UBERON:0003217 name: neural lobe of neurohypophysis alt_id: UBERON:FMA_74636-ZFA_0001271 def: "." [Wikipedia:Neurohypophysis] comment: TODO - compare with UBERON:0002198 subset: uberon_slim synonym: "pars nervosa of hypophysis" EXACT [] synonym: "pars nervosa of neurohypophysis" EXACT [] synonym: "pars nervosa of posterior lobe of pituitary gland" EXACT [] synonym: "posterior lobe-3" EXACT [] xref: FMA:74636 xref: NIF_GrossAnatomy:birnlex_941 is_a: UBERON:0002616 ! regional part of brain is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon relationship: part_of UBERON:0002198 ! neurohypophysis [Term] id: UBERON:0003218 name: ovary septum def: "Septum that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s)[GO]." [GO:0080126, Wikipedia:Septum] is_a: UBERON:0003037 ! septum relationship: part_of UBERON:0000992 ! ovary [Term] id: UBERON:0003219 name: shell septum def: "Septum that divides the internal chambers (camerae) of the shell of a cephalopod, namely nautiloids or ammonoids." [GO:0080126, Wikipedia:Septum_(marine_biology)] is_a: UBERON:0003037 ! septum [Term] id: UBERON:0003220 name: metanephric blastema def: "one of the two embryological structures that give rise to the kidney (the other is the ureteric bud). The metanephric blastema mostly develops into nephrons, but can also form parts of the collecting duct system.[WP]" [Wikipedia:Metanephric_blastema] synonym: "metanephric mesenchyme" EXACT [Wikipedia:Metanephric_blastema] synonym: "metanephric mesoderm" EXACT [Wikipedia:Metanephric_blastema] is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0003074 ! mesonephric duct [Term] id: UBERON:0003221 name: phalanx def: "Long bones of fingers and toes[Obol]. In primates such as humans and monkeys, the thumb and big toe have two phalanges, while the other fingers and toes consist of three[WP]." [Wikipedia:Phalanx] xref: MA:0000304 xref: ncithesaurus:Phalanx is_a: UBERON:0002495 ! long bone intersection_of: UBERON:0002495 ! long bone intersection_of: part_of UBERON:0002544 ! digit relationship: part_of UBERON:0002544 ! digit [Term] id: UBERON:0003224 name: syncytiotrophoblast of chorion xref: EHDAA:156 is_a: UBERON:0000371 ! implied link automatically realized ! syncytiotrophoblast intersection_of: UBERON:0000371 ! syncytiotrophoblast intersection_of: part_of UBERON:0003124 ! chorion [Term] id: UBERON:0003225 name: primitive endoderm of inner cell mass xref: EHDAA:44 is_a: UBERON:0003226 ! implied link automatically realized ! primitive endoderm of embryo intersection_of: UBERON:0000417 ! primitive endoderm intersection_of: part_of UBERON:0000087 ! inner cell mass [Term] id: UBERON:0003226 name: primitive endoderm of embryo xref: EHDAA:79 is_a: UBERON:0000417 ! implied link automatically realized ! primitive endoderm intersection_of: UBERON:0000417 ! primitive endoderm intersection_of: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003229 name: epithelium of elbow xref: EHDAA:4168 xref: EHDAA:6214 xref: HOG:0001044 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001461 ! elbow [Term] id: UBERON:0003230 name: epithelium of carpal region xref: EHDAA:5198 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0003231 name: epithelium of hip xref: EHDAA:5155 xref: EHDAA:6180 xref: HOG:0000779 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001464 ! hip [Term] id: UBERON:0003232 name: epithelium of knee xref: EHDAA:5161 xref: EHDAA:6186 xref: HOG:0000810 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001465 ! knee [Term] id: UBERON:0003233 name: epithelium of shoulder xref: EHDAA:4182 xref: EHDAA:6230 xref: HOG:0000761 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0003234 name: epithelium of nasal cavity xref: EHDAA:6803 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001707 ! nasal cavity [Term] id: UBERON:0003235 name: epithelium of upper jaw xref: EHDAA:8027 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0003236 name: epithelium of lower jaw xref: EHDAA:7999 xref: HOG:0000802 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0003238 name: epithelium of superior semicircular canal xref: EHDAA:7806 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001841 ! anterior semicircular canal [Term] id: UBERON:0003239 name: epithelium of posterior semicircular canal xref: EHDAA:7800 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001842 ! posterior semicircular canal [Term] id: UBERON:0003240 name: epithelium of lateral semicircular canal xref: EHDAA:7794 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001843 ! lateral semicircular canal [Term] id: UBERON:0003241 name: epithelium of utricle xref: EHDAA:4730 xref: HOG:0000634 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001853 ! utricle of membranous labyrinth [Term] id: UBERON:0003242 name: epithelium of saccule xref: EHDAA:4724 xref: HOG:0000633 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001854 ! saccule of membranous labyrinth [Term] id: UBERON:0003243 name: epithelium of cochlear duct xref: EHDAA:4722 xref: HOG:0000640 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001855 ! cochlear duct of membranous labyrinth [Term] id: UBERON:0003244 name: epithelium of mammary gland xref: EHDAA:6526 xref: FMA:74445 xref: HOG:0001088 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001911 ! lactiferous gland [Term] id: UBERON:0003246 name: epithelium of endolymphatic sac xref: EHDAA:7765 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002223 ! endolymphatic sac [Term] id: UBERON:0003247 name: epithelium of forearm xref: EHDAA:4174 xref: EHDAA:6220 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002386 ! lower segment of arm [Term] id: UBERON:0003248 name: epithelium of footplate xref: EHDAA:5145 xref: EHDAA:6144 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002496 ! stapes base [Term] id: UBERON:0003249 name: epithelium of otic placode xref: EHDAA:510 xref: HOG:0000636 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003069 ! otic placode [Term] id: UBERON:0003254 name: ectoderm of amnion xref: EHDAA:138 is_a: UBERON:0003255 ! implied link automatically realized ! ectoderm of embryo intersection_of: UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0000305 ! amnion [Term] id: UBERON:0003255 name: ectoderm of embryo xref: EHDAA:132 is_a: UBERON:0000924 ! implied link automatically realized ! ectoderm intersection_of: UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003256 name: endoderm of embryo xref: EHDAA:94 is_a: UBERON:0000925 ! implied link automatically realized ! endoderm intersection_of: UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003257 name: endoderm of yolk sac xref: EHDAA:166 is_a: UBERON:0003256 ! implied link automatically realized ! endoderm of embryo intersection_of: UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0001040 ! yolk sac [Term] id: UBERON:0003258 name: endoderm of foregut xref: EHDAA:524 is_a: UBERON:0003256 ! implied link automatically realized ! endoderm of embryo intersection_of: UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0001041 ! foregut [Term] id: UBERON:0003259 name: endoderm of midgut xref: EHDAA:987 is_a: UBERON:0003256 ! implied link automatically realized ! endoderm of embryo intersection_of: UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0001045 ! midgut [Term] id: UBERON:0003260 name: endoderm of hindgut xref: EHDAA:979 is_a: UBERON:0003256 ! implied link automatically realized ! endoderm of embryo intersection_of: UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0001046 ! hindgut [Term] id: UBERON:0003261 name: endoderm of thyroid primordium xref: EHDAA:956 is_a: UBERON:0003256 ! implied link automatically realized ! endoderm of embryo intersection_of: UBERON:0000925 ! endoderm intersection_of: part_of UBERON:0003091 ! thyroid primordium [Term] id: UBERON:0003262 name: mesoderm of amnion xref: EHDAA:140 is_a: UBERON:0003263 ! implied link automatically realized ! mesoderm of embryo intersection_of: UBERON:0000926 ! mesoderm intersection_of: part_of UBERON:0000305 ! amnion [Term] id: UBERON:0003263 name: mesoderm of embryo xref: EHDAA:183 is_a: UBERON:0000926 ! implied link automatically realized ! mesoderm intersection_of: UBERON:0000926 ! mesoderm intersection_of: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003264 name: mesoderm of yolk sac xref: EHDAA:168 is_a: UBERON:0003263 ! implied link automatically realized ! mesoderm of embryo intersection_of: UBERON:0000926 ! mesoderm intersection_of: part_of UBERON:0001040 ! yolk sac [Term] id: UBERON:0003265 name: mesoderm of chorion xref: EHDAA:154 is_a: UBERON:0003263 ! implied link automatically realized ! mesoderm of embryo intersection_of: UBERON:0000926 ! mesoderm intersection_of: part_of UBERON:0003124 ! chorion [Term] id: UBERON:0003266 name: nerve of central nervous system xref: EHDAA:2851 is_a: UBERON:0001021 ! implied link automatically realized ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0003267 name: tooth of upper jaw xref: EHDAA:8045 xref: MA:0001909 is_a: UBERON:0001091 ! implied link automatically realized ! calcareous tooth intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0003268 name: tooth of lower jaw xref: EHDAA:8009 xref: MA:0001907 is_a: UBERON:0001091 ! implied link automatically realized ! calcareous tooth intersection_of: UBERON:0001091 ! calcareous tooth intersection_of: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0003269 name: skeletal muscle of eye xref: EHDAA:2923 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0000970 ! eye [Term] id: UBERON:0003270 name: skeletal muscle of leg xref: EHDAA:8291 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0000978 ! leg [Term] id: UBERON:0003271 name: skeletal muscle of pelvic girdle xref: EHDAA:8326 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001271 ! pelvic girdle [Term] id: UBERON:0003272 name: skeletal muscle of arm xref: EHDAA:8277 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001460 ! arm [Term] id: UBERON:0003273 name: skeletal muscle of tongue xref: EHDAA:9146 xref: HOG:0001390 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0003274 name: mesothelium of omental bursa xref: EHDAA:2339 is_a: UBERON:0001136 ! implied link automatically realized ! mesothelium intersection_of: UBERON:0001136 ! mesothelium intersection_of: part_of UBERON:0001341 ! lesser sac [Term] id: UBERON:0003276 name: skeleton of embryo xref: EHDAA:5047 is_a: UBERON:0001434 ! implied link automatically realized ! skeleton intersection_of: UBERON:0001434 ! skeleton intersection_of: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003277 name: skeleton of upper jaw xref: EHDAA:8041 is_a: UBERON:0001704 ! implied link automatically realized ! viscerocranium intersection_of: UBERON:0000075 ! subdivision of skeleton intersection_of: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0003278 name: skeleton of lower jaw xref: EHDAA:8005 is_a: UBERON:0001704 ! implied link automatically realized ! viscerocranium intersection_of: UBERON:0000075 ! subdivision of skeleton intersection_of: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0003279 name: endothelium of trachea xref: EHDAA:3082 is_a: UBERON:0001901 ! implied link automatically realized ! epithelium of trachea is_a: UBERON:0001986 ! implied link automatically realized ! endothelium intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0001005 ! trachea [Term] id: UBERON:0003280 name: endothelium of main bronchus xref: EHDAA:3076 is_a: UBERON:0001986 ! implied link automatically realized ! endothelium is_a: UBERON:0002340 ! implied link automatically realized ! epithelium of main bronchus intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0003281 name: mesentery of stomach synonym: "mesogastium" EXACT [MA:0001617] synonym: "mesogastrium" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html] synonym: "stomach mesentery" EXACT [Obol:obol] xref: EHDAA:2999 xref: MA:0001617 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002095 ! implied link automatically realized ! mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0000945 ! stomach [Term] id: UBERON:0003282 name: mesentery of heart xref: EHDAA:432 is_a: UBERON:0002095 ! implied link automatically realized ! mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0000948 ! heart [Term] id: UBERON:0003283 name: mesentery of oesophagus xref: EHDAA:2943 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001975 ! implied link automatically realized ! serosa of esophagus is_a: UBERON:0002095 ! implied link automatically realized ! mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0003284 name: mesentery of midgut xref: EHDAA:3031 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002095 ! implied link automatically realized ! mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0001045 ! midgut [Term] id: UBERON:0003285 name: limb of embryo xref: EHDAA:1697 is_a: UBERON:0002101 ! implied link automatically realized ! limb intersection_of: UBERON:0002101 ! limb intersection_of: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003286 name: duodenum of foregut xref: EHDAA:3830 is_a: UBERON:0002114 ! implied link automatically realized ! duodenum intersection_of: UBERON:0002114 ! duodenum intersection_of: part_of UBERON:0001041 ! foregut [Term] id: UBERON:0003287 name: duodenum of midgut xref: EHDAA:3937 is_a: UBERON:0002114 ! implied link automatically realized ! duodenum intersection_of: UBERON:0002114 ! duodenum intersection_of: part_of UBERON:0001045 ! midgut [Term] id: UBERON:0003288 name: meninges of midbrain xref: EHDAA:3708 xref: HOG:0000012 xref: MA:0001058 is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx intersection_of: UBERON:0002360 ! meninx intersection_of: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0003289 name: meninges of telencephalon xref: EHDAA:5476 xref: HOG:0000010 xref: MA:0000979 is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges intersection_of: UBERON:0002360 ! meninx intersection_of: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0003290 name: meninges of diencephalon xref: EHDAA:5458 xref: HOG:0000009 xref: MA:0000826 is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges intersection_of: UBERON:0002360 ! meninx intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003291 name: meninges of hindbrain xref: EHDAA:3688 xref: HOG:0000011 xref: MA:0000987 is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx intersection_of: UBERON:0002360 ! meninx intersection_of: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0003292 name: meninges of spinal cord xref: EHDAA:2865 xref: HOG:0000443 xref: MA:0001130 is_a: UBERON:0002360 ! implied link automatically realized ! meninx intersection_of: UBERON:0002360 ! meninx intersection_of: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0003293 name: gland of oral region xref: EHDAA:2181 is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0000166 ! oral opening [Term] id: UBERON:0003294 name: gland of foregut xref: EHDAA:950 is_a: UBERON:0003408 ! implied link automatically realized ! gland of gut intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001041 ! foregut [Term] id: UBERON:0003295 name: gland of pharynx xref: EHDAA:2967 is_a: UBERON:0002530 ! implied link automatically realized ! gland intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001042 ! pharynx [Term] id: UBERON:0003296 name: gland of diencephalon xref: EHDAA:4475 is_a: UBERON:0002530 ! implied link automatically realized ! gland is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003297 name: gland of integumental system xref: EHDAA:6522 is_a: UBERON:0002530 ! implied link automatically realized ! gland intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0002416 ! integumental system [Term] id: UBERON:0003298 name: roof plate of neural tube xref: EHDAA:2891 xref: EHDAA:916 xref: ZFA:0001436 is_a: UBERON:0003054 ! implied link automatically realized ! roof plate intersection_of: UBERON:0003054 ! roof plate intersection_of: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0003299 name: roof plate of midbrain xref: EHDAA:3712 xref: ZFA:0000355 is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003054 ! implied link automatically realized ! roof plate intersection_of: UBERON:0003054 ! roof plate intersection_of: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0003300 name: roof plate of telencephalon xref: EHDAA:3512 is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003054 ! implied link automatically realized ! roof plate intersection_of: UBERON:0003054 ! roof plate intersection_of: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0003301 name: roof plate of diencephalon xref: EHDAA:1979 xref: EHDAA:2657 xref: EHDAA:3494 xref: ZFA:0001358 is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0003054 ! implied link automatically realized ! roof plate intersection_of: UBERON:0003054 ! roof plate intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003302 name: roof plate of metencephalon xref: EHDAA:5524 is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon is_a: UBERON:0003054 ! implied link automatically realized ! roof plate intersection_of: UBERON:0003054 ! roof plate intersection_of: part_of UBERON:0001895 ! metencephalon [Term] id: UBERON:0003303 name: roof plate of medulla oblongata xref: EHDAA:7614 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003054 ! implied link automatically realized ! roof plate intersection_of: UBERON:0003054 ! roof plate intersection_of: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0003304 name: blood island of mesoderm xref: EHDAA:170 is_a: UBERON:0003061 ! implied link automatically realized ! blood island intersection_of: UBERON:0003061 ! blood island intersection_of: part_of UBERON:0000926 ! mesoderm [Term] id: UBERON:0003305 name: blood island of mesenchyme xref: EHDAA:207 is_a: UBERON:0003061 ! implied link automatically realized ! blood island intersection_of: UBERON:0003061 ! blood island intersection_of: part_of UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003306 name: floor plate of neural tube xref: EHDAA:2871 xref: EHDAA:910 xref: ZFA:0001434 is_a: UBERON:0003079 ! implied link automatically realized ! floor plate intersection_of: UBERON:0003079 ! floor plate intersection_of: part_of UBERON:0001049 ! neural tube [Term] id: UBERON:0003307 name: floor plate of midbrain xref: EHDAA:3698 xref: ZFA:0001677 is_a: UBERON:0002950 ! implied link automatically realized ! regional part of midbrain is_a: UBERON:0003079 ! implied link automatically realized ! floor plate intersection_of: UBERON:0003079 ! floor plate intersection_of: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0003308 name: floor plate of telencephalon xref: EHDAA:3498 xref: ZFA:0000914 is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon is_a: UBERON:0003079 ! implied link automatically realized ! floor plate intersection_of: UBERON:0003079 ! floor plate intersection_of: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0003309 name: floor plate of diencephalon xref: EHDAA:1975 xref: EHDAA:2651 xref: EHDAA:3480 xref: ZFA:0000871 is_a: UBERON:0002784 ! implied link automatically realized ! regional part of diencephalon is_a: UBERON:0003079 ! implied link automatically realized ! floor plate intersection_of: UBERON:0003079 ! floor plate intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003310 name: floor plate of metencephalon xref: EHDAA:5500 is_a: UBERON:0002680 ! implied link automatically realized ! regional part of metencephalon is_a: UBERON:0003079 ! implied link automatically realized ! floor plate intersection_of: UBERON:0003079 ! floor plate intersection_of: part_of UBERON:0001895 ! metencephalon [Term] id: UBERON:0003311 name: floor plate of medulla oblongata xref: EHDAA:7590 is_a: UBERON:0002678 ! implied link automatically realized ! regional part of medulla oblongata is_a: UBERON:0003079 ! implied link automatically realized ! floor plate intersection_of: UBERON:0003079 ! floor plate intersection_of: part_of UBERON:0001896 ! medulla oblongata [Term] id: UBERON:0003312 name: mesenchyme of testis xref: EHDAA:8150 xref: HOG:0001442 is_a: UBERON:0003855 ! implied link automatically realized ! gonad mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000473 ! testis [Term] id: UBERON:0003313 name: mesenchyme of embryo xref: EHDAA:177 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000922 ! embryo [Term] id: UBERON:0003314 name: mesenchyme of eye xref: EHDAA:2910 xref: HOG:0001084 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000970 ! eye [Term] id: UBERON:0003315 name: mesenchyme of ovary xref: EHDAA:8128 xref: HOG:0001441 is_a: UBERON:0003855 ! implied link automatically realized ! gonad mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000992 ! ovary [Term] id: UBERON:0003316 name: mesenchyme of yolk sac xref: EHDAA:205 xref: HOG:0000503 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001040 ! yolk sac [Term] id: UBERON:0003317 name: mesenchyme of incisor xref: EHDAA:8015 xref: EHDAA:8051 is_a: UBERON:0003856 ! implied link automatically realized ! tooth mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001098 ! incisor tooth [Term] id: UBERON:0003318 name: mesenchyme of elbow xref: EHDAA:4170 xref: EHDAA:6216 xref: HOG:0001075 is_a: UBERON:0003413 ! implied link automatically realized ! mesenchyme of arm intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001461 ! elbow [Term] id: UBERON:0003319 name: mesenchyme of carpal region xref: EHDAA:5200 is_a: UBERON:0003413 ! implied link automatically realized ! mesenchyme of arm intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0003320 name: mesenchyme of hip xref: EHDAA:5157 xref: EHDAA:6182 xref: HOG:0001029 is_a: UBERON:0003860 ! implied link automatically realized ! hindlimb mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001464 ! hip [Term] id: UBERON:0003321 name: mesenchyme of knee xref: EHDAA:5163 xref: EHDAA:6188 xref: HOG:0001070 is_a: UBERON:0003860 ! implied link automatically realized ! hindlimb mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001465 ! knee [Term] id: UBERON:0003322 name: mesenchyme of shoulder xref: EHDAA:4184 xref: EHDAA:6232 xref: HOG:0001035 is_a: UBERON:0003859 ! implied link automatically realized ! forelimb mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0003323 name: mesenchyme of upper jaw xref: EHDAA:8031 xref: HOG:0001099 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0003324 name: mesenchyme of lower jaw xref: EHDAA:8003 xref: HOG:0001069 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0003325 name: mesenchyme of pinna xref: EHDAA:8981 xref: HOG:0000747 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001757 ! pinna [Term] id: UBERON:0003326 name: mesenchyme of mammary gland xref: EHDAA:6528 xref: HOG:0001087 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001911 ! lactiferous gland [Term] id: UBERON:0003327 name: mesenchyme of forearm xref: EHDAA:4176 xref: EHDAA:6222 is_a: UBERON:0003413 ! implied link automatically realized ! mesenchyme of arm intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002386 ! lower segment of arm [Term] id: UBERON:0003328 name: mesenchyme of footplate xref: EHDAA:5149 xref: EHDAA:6172 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002496 ! stapes base [Term] id: UBERON:0003329 name: submucosa of anal canal xref: EMAPA:27535 xref: FMA:85399 is_a: UBERON:0000009 ! implied link automatically realized ! submucosa intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0000159 ! anal canal [Term] id: UBERON:0003330 name: submucosa of rectum xref: EMAPA:27083 xref: EMAPA:27087 xref: EMAPA:27323 xref: EMAPA:27331 xref: FMA:15034 is_a: UBERON:0001205 ! implied link automatically realized ! submucosa of small intestine intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001052 ! rectum [Term] id: UBERON:0003331 name: submucosa of colon xref: EMAPA:27379 xref: FMA:14985 is_a: UBERON:0001208 ! implied link automatically realized ! submucosa of large intestine intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0001155 ! colon [Term] id: UBERON:0003332 name: submucosa of duodenum xref: EMAPA:27239 xref: FMA:14943 is_a: UBERON:0001205 ! implied link automatically realized ! submucosa of small intestine intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0002114 ! duodenum [Term] id: UBERON:0003333 name: submucosa of jejunum xref: EMAPA:27111 xref: EMAPA:27351 xref: FMA:14950 is_a: UBERON:0001205 ! implied link automatically realized ! submucosa of small intestine intersection_of: UBERON:0000009 ! submucosa intersection_of: part_of UBERON:0002115 ! jejunum [Term] id: UBERON:0003334 name: serosa of rectum xref: EMAPA:27087 xref: EMAPA:27331 xref: FMA:15039 is_a: UBERON:0001206 ! implied link automatically realized ! serosa of small intestine intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0001052 ! rectum [Term] id: UBERON:0003335 name: serosa of colon xref: EMAPA:27387 xref: FMA:14990 is_a: UBERON:0001209 ! implied link automatically realized ! serosa of large intestine intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0001155 ! colon [Term] id: UBERON:0003336 name: serosa of duodenum xref: EMAPA:27247 xref: FMA:14948 is_a: UBERON:0001206 ! implied link automatically realized ! serosa of small intestine intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0002114 ! duodenum [Term] id: UBERON:0003337 name: serosa of jejunum xref: EMAPA:27115 xref: EMAPA:27359 xref: FMA:14955 is_a: UBERON:0001206 ! implied link automatically realized ! serosa of small intestine intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0002115 ! jejunum [Term] id: UBERON:0003338 name: ganglion of peripheral nervous system xref: EMAPA:18371 xref: MA:0001161 is_a: UBERON:0000045 ! implied link automatically realized ! ganglion intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0003339 name: ganglion of central nervous system xref: EMAPA:16658 xref: FMA:83843 is_a: UBERON:0000045 ! implied link automatically realized ! ganglion intersection_of: UBERON:0000045 ! ganglion intersection_of: part_of UBERON:0001017 ! central nervous system [Term] id: UBERON:0003340 name: urethra of urogenital sinus xref: EMAPA:30891 is_a: UBERON:0000057 ! implied link automatically realized ! urethra intersection_of: UBERON:0000057 ! urethra intersection_of: part_of UBERON:0000164 ! urogenital sinus [Term] id: UBERON:0003341 name: urethra of urinary system xref: EMAPA:30901 is_a: UBERON:0000057 ! implied link automatically realized ! urethra intersection_of: UBERON:0000057 ! urethra intersection_of: part_of UBERON:0001008 ! urinary system [Term] id: UBERON:0003342 name: mucosa of anal canal xref: EMAPA:27531 xref: FMA:74654 is_a: UBERON:0000344 ! implied link automatically realized ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000159 ! anal canal [Term] id: UBERON:0003343 name: mucosa of oral region xref: EMAPA:26937 is_a: UBERON:0003729 ! implied link automatically realized ! mouth mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000166 ! oral opening [Term] id: UBERON:0003346 name: mucosa of rectum xref: EMAPA:27081 xref: EMAPA:27319 xref: FMA:15033 is_a: UBERON:0001204 ! implied link automatically realized ! mucosa of small intestine intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0001052 ! rectum [Term] id: UBERON:0003348 name: mucosa of duodenum xref: EMAPA:27235 is_a: UBERON:0001204 ! implied link automatically realized ! mucosa of small intestine intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0002114 ! duodenum [Term] id: UBERON:0003350 name: epithelium of mucosa xref: EMAPA:18668 xref: EMAPA:18835 xref: EMAPA:18857 xref: EMAPA:18862 xref: EMAPA:18868 xref: EMAPA:18893 xref: EMAPA:18899 xref: EMAPA:18912 xref: EMAPA:18917 xref: EMAPA:18927 xref: EMAPA:18934 xref: EMAPA:18941 xref: EMAPA:19078 xref: EMAPA:26961 xref: EMAPA:26985 xref: EMAPA:27019 xref: EMAPA:27033 xref: EMAPA:27047 xref: EMAPA:27061 xref: EMAPA:27075 xref: EMAPA:27089 xref: EMAPA:27103 xref: EMAPA:27131 xref: EMAPA:27145 xref: EMAPA:27159 xref: EMAPA:27175 xref: EMAPA:27191 xref: EMAPA:27207 xref: EMAPA:27219 xref: EMAPA:27229 xref: EMAPA:27307 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0000344 ! mucosa [Term] id: UBERON:0003351 name: epithelium of pharynx xref: EMAPA:16708 xref: ZFA:0001174 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001042 ! pharynx [Term] id: UBERON:0003352 name: epithelium of midgut xref: EMAPA:16569 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001045 ! midgut [Term] id: UBERON:0003353 name: epithelium of hindgut xref: EMAPA:16717 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001046 ! hindgut [Term] id: UBERON:0003354 name: epithelium of rectum xref: EMAPA:17898 xref: FMA:17510 xref: HOG:0001037 is_a: UBERON:0001902 ! implied link automatically realized ! epithelium of small intestine intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001052 ! rectum [Term] id: UBERON:0003355 name: epithelium of incisor xref: EMAPA:17919 xref: EMAPA:17940 is_a: UBERON:0003843 ! implied link automatically realized ! tooth epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001098 ! incisor tooth [Term] id: UBERON:0003356 name: epithelium of nasal septum xref: EMAPA:18442 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001706 ! nasal septum [Term] id: UBERON:0003357 name: epithelium of tongue xref: EMAPA:17881 xref: EMAPA:18872 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0003358 name: epithelium of soft palate xref: EMAPA:18950 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001733 ! soft palate [Term] id: UBERON:0003359 name: epithelium of submandibular gland xref: EMAPA:18813 xref: HOG:0000989 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001736 ! submandibular gland [Term] id: UBERON:0003360 name: epithelium of parotid xref: EMAPA:18538 xref: HOG:0001434 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001831 ! parotid gland [Term] id: UBERON:0003361 name: epithelium of sublingual gland xref: EMAPA:18810 xref: HOG:0001098 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001832 ! sublingual gland [Term] id: UBERON:0003362 name: epithelium of endolymphatic duct xref: EMAPA:18582 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001860 ! endolymphatic duct [Term] id: UBERON:0003363 name: epithelium of ductus reuniens xref: EMAPA:17289 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001861 ! ductus reuniens [Term] id: UBERON:0003364 name: epithelium of right lung xref: EMAPA:17663 is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0003365 name: epithelium of left lung xref: EMAPA:17655 is_a: UBERON:0000115 ! implied link automatically realized ! lung epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0003366 name: epithelium of uterine horn xref: EMAPA:29030 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002247 ! uterine horn [Term] id: UBERON:0003367 name: epithelium of vomeronasal organ xref: EMAPA:18444 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002255 ! vomeronasal organ [Term] id: UBERON:0003368 name: epithelium of hard palate xref: EMAPA:18953 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0003216 ! hard palate [Term] id: UBERON:0003371 name: ectoderm of leg xref: EMAPA:17254 is_a: UBERON:0003255 ! implied link automatically realized ! ectoderm of embryo intersection_of: UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0000978 ! leg [Term] id: UBERON:0003372 name: ectoderm of arm xref: EMAPA:17243 is_a: UBERON:0003255 ! implied link automatically realized ! ectoderm of embryo intersection_of: UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0001460 ! arm [Term] id: UBERON:0003373 name: ectoderm of footplate xref: EMAPA:17250 is_a: UBERON:0003255 ! implied link automatically realized ! ectoderm of embryo intersection_of: UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0002496 ! stapes base [Term] id: UBERON:0003374 name: ectoderm of chorion xref: EMAPA:16113 is_a: UBERON:0003255 ! implied link automatically realized ! ectoderm of embryo intersection_of: UBERON:0000924 ! ectoderm intersection_of: part_of UBERON:0003124 ! chorion [Term] id: UBERON:0003375 name: smooth muscle of eye xref: EMAPA:18807 is_a: UBERON:0000020 ! implied link automatically realized ! sense organ is_a: UBERON:0000953 ! implied link automatically realized ! visceral muscle intersection_of: UBERON:0000953 ! visceral muscle intersection_of: part_of UBERON:0000970 ! eye [Term] id: UBERON:0003376 name: smooth muscle of trachea xref: EMAPA:19192 xref: FMA:262010 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0000953 ! implied link automatically realized ! visceral muscle is_a: UBERON:0003830 ! implied link automatically realized ! thoracic segment muscle is_a: UBERON:0003831 ! implied link automatically realized ! respiratory system muscle intersection_of: UBERON:0000953 ! visceral muscle intersection_of: part_of UBERON:0001005 ! trachea [Term] id: UBERON:0003377 name: nerve of peripheral nervous system xref: EMAPA:25148 is_a: UBERON:0001021 ! implied link automatically realized ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0003378 name: cardiac muscle of auricular region xref: EMAPA:17318 xref: EMAPA:17324 is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0001691 ! external ear [Term] id: UBERON:0003379 name: cardiac muscle of right atrium xref: EMAPA:17326 xref: FMA:7282 is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002078 ! right atrium [Term] id: UBERON:0003380 name: cardiac muscle of left atrium xref: EMAPA:17320 xref: FMA:7285 is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002079 ! left atrium [Term] id: UBERON:0003381 name: cardiac muscle of right ventricle xref: EMAPA:17342 xref: FMA:83452 is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002080 ! right ventricle [Term] id: UBERON:0003382 name: cardiac muscle of left ventricle xref: EMAPA:17339 xref: FMA:83453 is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002084 ! left ventricle [Term] id: UBERON:0003383 name: cardiac muscle of interventricular septum xref: EMAPA:17335 xref: FMA:84084 is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002094 ! interventricular septum [Term] id: UBERON:0003384 name: skeletal muscle of pharynx xref: EMAPA:18963 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0001042 ! pharynx [Term] id: UBERON:0003385 name: skeletal muscle of mesenchyme xref: EMAPA:19066 xref: EMAPA:19071 is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0003104 ! mesenchyme [Term] id: UBERON:0003386 name: smooth muscle of eye xref: EMAPA:18807 is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0000970 ! eye [Term] id: UBERON:0003387 name: smooth muscle of trachea xref: EMAPA:19192 xref: FMA:262010 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0001135 ! implied link automatically realized ! smooth muscle tissue intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001005 ! trachea [Term] id: UBERON:0003388 name: mesothelium of pericardial cavity xref: EMAPA:18449 is_a: UBERON:0001136 ! implied link automatically realized ! mesothelium intersection_of: UBERON:0001136 ! mesothelium intersection_of: part_of UBERON:0001074 ! pericardial cavity [Term] id: UBERON:0003389 name: mesothelium of diaphragm xref: EMAPA:18429 is_a: UBERON:0001136 ! implied link automatically realized ! mesothelium intersection_of: UBERON:0001136 ! mesothelium intersection_of: part_of UBERON:0001103 ! diaphragm [Term] id: UBERON:0003390 name: mesothelium of pleural cavity xref: EMAPA:18463 is_a: UBERON:0001136 ! implied link automatically realized ! mesothelium intersection_of: UBERON:0001136 ! mesothelium intersection_of: part_of UBERON:0002402 ! pleural cavity [Term] id: UBERON:0003391 name: lip of upper jaw xref: EMAPA:17925 is_a: UBERON:0001833 ! implied link automatically realized ! lip intersection_of: UBERON:0001833 ! lip intersection_of: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0003392 name: lip of lower jaw xref: EMAPA:17909 is_a: UBERON:0001833 ! implied link automatically realized ! lip intersection_of: UBERON:0001833 ! lip intersection_of: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0003393 name: mesentery of urinary system xref: EMAPA:17367 is_a: UBERON:0002095 ! implied link automatically realized ! mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0001008 ! urinary system [Term] id: UBERON:0003394 name: mesentery of hindgut xref: EMAPA:16718 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002095 ! implied link automatically realized ! mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0001046 ! hindgut [Term] id: UBERON:0003395 name: mesentery of rectum xref: EMAPA:18664 xref: EMAPA:18929 is_a: UBERON:0001170 ! implied link automatically realized ! mesentery of small intestine is_a: UBERON:0003334 ! implied link automatically realized ! serosa of rectum intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0001052 ! rectum [Term] id: UBERON:0003396 name: mesentery of colon xref: EMAPA:18942 xref: FMA:14645 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002095 ! implied link automatically realized ! mesentery is_a: UBERON:0003335 ! implied link automatically realized ! serosa of colon intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0001155 ! colon [Term] id: UBERON:0003397 name: mesentery of duodenum xref: EMAPA:19081 is_a: UBERON:0001170 ! implied link automatically realized ! mesentery of small intestine is_a: UBERON:0003336 ! implied link automatically realized ! serosa of duodenum intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0002114 ! duodenum [Term] id: UBERON:0003398 name: mesentery of jejunum synonym: "jejunal mesentery" EXACT [] synonym: "jejunum mesentery" EXACT [] synonym: "mesojejunum" EXACT [http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html] xref: EMAPA:18670 xref: EMAPA:18937 xref: FMA:14651 is_a: UBERON:0001170 ! implied link automatically realized ! mesentery of small intestine is_a: UBERON:0003337 ! implied link automatically realized ! serosa of jejunum intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0002115 ! jejunum [Term] id: UBERON:0003400 name: skin of hip xref: EMAPA:18148 is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin intersection_of: UBERON:0002097 ! skin intersection_of: part_of UBERON:0001464 ! hip [Term] id: UBERON:0003401 name: skin of knee xref: EMAPA:18151 is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin intersection_of: UBERON:0002097 ! skin intersection_of: part_of UBERON:0001465 ! knee [Term] id: UBERON:0003402 name: skin of shoulder xref: EMAPA:18059 is_a: UBERON:0003531 ! implied link automatically realized ! forelimb skin intersection_of: UBERON:0002097 ! skin intersection_of: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0003403 name: skin of forearm xref: EMAPA:18056 xref: FMA:38265 is_a: UBERON:0002427 ! implied link automatically realized ! arm skin intersection_of: UBERON:0002097 ! skin intersection_of: part_of UBERON:0002386 ! lower segment of arm [Term] id: UBERON:0003404 name: lobar bronchus of right lung xref: EMAPA:17664 is_a: UBERON:0002183 ! implied link automatically realized ! lobar bronchus intersection_of: UBERON:0002183 ! lobar bronchus intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0003405 name: lobar bronchus of left lung xref: EMAPA:17656 is_a: UBERON:0002183 ! implied link automatically realized ! lobar bronchus intersection_of: UBERON:0002183 ! lobar bronchus intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0003406 name: cartilage of respiratory system xref: EMAPA:18694 xref: MA:0001818 is_a: UBERON:0002418 ! implied link automatically realized ! cartilage intersection_of: UBERON:0002418 ! cartilage intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003407 name: cartilage of nasal septum xref: EMAPA:25091 is_a: UBERON:0002418 ! implied link automatically realized ! cartilage intersection_of: UBERON:0002418 ! cartilage intersection_of: part_of UBERON:0001706 ! nasal septum [Term] id: UBERON:0003408 name: gland of gut xref: EMAPA:18815 is_a: UBERON:0002530 ! implied link automatically realized ! gland intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001555 ! gut [Term] id: UBERON:0003409 name: gland of tongue xref: EMAPA:25097 is_a: UBERON:0002530 ! implied link automatically realized ! gland intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0003410 name: gland of oropharynx xref: EMAPA:25095 is_a: UBERON:0003295 ! implied link automatically realized ! gland of pharynx intersection_of: UBERON:0002530 ! gland intersection_of: part_of UBERON:0001729 ! oropharynx [Term] id: UBERON:0003411 name: mesenchyme of amnion xref: EMAPA:16265 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000305 ! amnion [Term] id: UBERON:0003412 name: mesenchyme of leg xref: EMAPA:17255 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000978 ! leg [Term] id: UBERON:0003413 name: mesenchyme of arm xref: EMAPA:17244 is_a: UBERON:0003859 ! implied link automatically realized ! forelimb mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001460 ! arm [Term] id: UBERON:0003414 name: mesenchyme of mandible xref: EMAPA:17912 is_a: UBERON:0003324 ! implied link automatically realized ! mesenchyme of lower jaw intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001684 ! mandible [Term] id: UBERON:0003415 name: mesenchyme of nasal septum xref: EMAPA:18443 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001706 ! nasal septum [Term] id: UBERON:0003416 name: mesenchyme of tongue xref: EMAPA:17882 xref: EMAPA:18878 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001723 ! tongue [Term] id: UBERON:0003417 name: mesenchyme of soft palate xref: EMAPA:18951 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001733 ! soft palate [Term] id: UBERON:0003418 name: mesenchyme of submandibular gland xref: EMAPA:18814 xref: HOG:0001110 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001736 ! submandibular gland [Term] id: UBERON:0003419 name: mesenchyme of parotid xref: EMAPA:18539 xref: HOG:0001435 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001831 ! parotid gland [Term] id: UBERON:0003420 name: mesenchyme of sublingual gland xref: EMAPA:18811 xref: HOG:0001106 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001832 ! sublingual gland [Term] id: UBERON:0003421 name: mesenchyme of vomeronasal organ xref: EMAPA:18445 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002255 ! vomeronasal organ [Term] id: UBERON:0003422 name: mesenchyme of umbilical cord xref: EMAPA:26127 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002331 ! umbilical cord [Term] id: UBERON:0003423 name: mesenchyme of chorion xref: EMAPA:16266 is_a: UBERON:0003315 ! implied link automatically realized ! mesenchyme of ovary intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0003124 ! chorion [Term] id: UBERON:0003424 name: mesenchyme of hard palate xref: EMAPA:18954 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0003216 ! hard palate [Term] id: UBERON:0003425 name: renal lymph node xref: MA:0002882 is_a: UBERON:0002507 ! implied link automatically realized ! abdominal lymph node intersection_of: UBERON:0000029 ! lymph node intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0003426 name: dermis adipose tissue xref: MA:0000798 is_a: UBERON:0001013 ! implied link automatically realized ! adipose tissue intersection_of: UBERON:0001013 ! adipose tissue intersection_of: part_of UBERON:0002067 ! dermis [Term] id: UBERON:0003427 name: abdominal fat pad xref: MA:0000472 is_a: UBERON:0003916 ! implied link automatically realized ! fat pad intersection_of: UBERON:0003916 ! fat pad intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0003428 name: gonadal fat pad xref: MA:0002547 is_a: UBERON:0003916 ! implied link automatically realized ! fat pad intersection_of: UBERON:0003916 ! fat pad intersection_of: part_of UBERON:0000991 ! gonad [Term] id: UBERON:0003429 name: abdomen nerve xref: MA:0000521 is_a: UBERON:0001021 ! implied link automatically realized ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0003430 name: neck nerve xref: MA:0000588 is_a: UBERON:0001021 ! implied link automatically realized ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0000974 ! neck [Term] id: UBERON:0003431 name: leg nerve xref: MA:0000673 is_a: UBERON:0003440 ! implied link automatically realized ! limb nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0000978 ! leg [Term] id: UBERON:0003432 name: chest nerve xref: MA:0000551 is_a: UBERON:0003824 ! implied link automatically realized ! thoracic segment nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001443 ! chest [Term] id: UBERON:0003433 name: arm nerve xref: MA:0000595 is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001460 ! arm [Term] id: UBERON:0003434 name: wrist nerve xref: MA:0000637 is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0003435 name: foot digit nerve xref: MA:0000649 is_a: UBERON:0003445 ! implied link automatically realized ! foot nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001466 ! toe [Term] id: UBERON:0003436 name: shoulder nerve xref: MA:0000634 is_a: UBERON:0003432 ! implied link automatically realized ! chest nerve is_a: UBERON:0003441 ! implied link automatically realized ! forelimb nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0003437 name: eyelid nerve xref: MA:0001255 is_a: UBERON:0000941 ! implied link automatically realized ! optic nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0003438 name: iris nerve xref: MA:0001291 is_a: UBERON:0000941 ! implied link automatically realized ! optic nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0001769 ! iris [Term] id: UBERON:0003439 name: trunk nerve xref: MA:0000515 is_a: UBERON:0001021 ! implied link automatically realized ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0003440 name: limb nerve xref: MA:0000693 is_a: UBERON:0001021 ! implied link automatically realized ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002101 ! limb [Term] id: UBERON:0003441 name: forelimb nerve xref: MA:0000616 is_a: UBERON:0003440 ! implied link automatically realized ! limb nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0003442 name: hindlimb nerve xref: MA:0000664 is_a: UBERON:0003440 ! implied link automatically realized ! limb nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003443 name: thoracic cavity nerve xref: MA:0000556 is_a: UBERON:0003824 ! implied link automatically realized ! thoracic segment nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0003444 name: pelvis nerve xref: MA:0000542 is_a: UBERON:0003439 ! implied link automatically realized ! trunk nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0003445 name: foot nerve xref: MA:0000653 is_a: UBERON:0003442 ! implied link automatically realized ! hindlimb nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002387 ! foot [Term] id: UBERON:0003446 name: ankle nerve xref: MA:0000640 is_a: UBERON:0003442 ! implied link automatically realized ! hindlimb nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002388 ! ankle [Term] id: UBERON:0003447 name: hand digit nerve xref: MA:0000625 is_a: UBERON:0003448 ! implied link automatically realized ! hand nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002389 ! finger [Term] id: UBERON:0003448 name: hand nerve xref: MA:0000629 is_a: UBERON:0003433 ! implied link automatically realized ! arm nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0003449 name: tail intervertebral disc xref: MA:0000698 is_a: UBERON:0001066 ! implied link automatically realized ! intervertebral disk intersection_of: UBERON:0001066 ! intervertebral disk intersection_of: part_of UBERON:0002415 ! tail [Term] id: UBERON:0003450 name: upper jaw incisor xref: MA:0001601 xref: ncithesaurus:Upper_Jaw_Incisor is_a: UBERON:0001098 ! implied link automatically realized ! incisor tooth is_a: UBERON:0003267 ! implied link automatically realized ! tooth of upper jaw intersection_of: UBERON:0001098 ! incisor tooth intersection_of: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0003451 name: lower jaw incisor xref: MA:0001600 xref: ncithesaurus:Lower_Jaw_Incisor is_a: UBERON:0001098 ! implied link automatically realized ! incisor tooth is_a: UBERON:0003268 ! implied link automatically realized ! tooth of lower jaw intersection_of: UBERON:0001098 ! incisor tooth intersection_of: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0003452 name: trabecula carnea cardiac muscle tissue xref: FMA:84428 xref: MA:0002833 is_a: UBERON:0001133 ! implied link automatically realized ! cardiac muscle tissue intersection_of: UBERON:0001133 ! cardiac muscle tissue intersection_of: part_of UBERON:0002511 ! trabecula carnea [Term] id: UBERON:0003453 name: large intestine peyer's patch xref: MA:0001550 is_a: UBERON:0003454 ! implied link automatically realized ! small intestine peyer's patch intersection_of: UBERON:0001211 ! aggregated lymphoid follicle of small intestine intersection_of: part_of UBERON:0001155 ! colon [Term] id: UBERON:0003454 name: small intestine peyer's patch xref: MA:0001557 is_a: UBERON:0001211 ! implied link automatically realized ! aggregated lymphoid follicle of small intestine intersection_of: UBERON:0001211 ! aggregated lymphoid follicle of small intestine intersection_of: part_of UBERON:0002108 ! small intestine [Term] id: UBERON:0003455 name: inner renal medulla loop of henle xref: MA:0002623 is_a: UBERON:0001288 ! implied link automatically realized ! loop of Henle intersection_of: UBERON:0001288 ! loop of Henle intersection_of: part_of UBERON:0001294 ! inner medulla of kidney [Term] id: UBERON:0003456 name: respiratory system lymphatic vessel xref: MA:0001824 is_a: UBERON:0001473 ! implied link automatically realized ! lymphatic vessel intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003457 name: head bone xref: MA:0000576 is_a: UBERON:0001474 ! implied link automatically realized ! bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0000033 ! head [Term] id: UBERON:0003458 name: neck bone xref: MA:0000584 is_a: UBERON:0001474 ! implied link automatically realized ! bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0000974 ! neck [Term] id: UBERON:0003459 name: chest bone xref: MA:0000547 is_a: UBERON:0003827 ! implied link automatically realized ! thoracic segment bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0001443 ! chest [Term] id: UBERON:0003460 name: arm bone xref: MA:0000592 is_a: UBERON:0002428 ! implied link automatically realized ! limb bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0001460 ! arm [Term] id: UBERON:0003461 name: shoulder bone xref: MA:0000631 is_a: UBERON:0002428 ! implied link automatically realized ! limb bone is_a: UBERON:0003459 ! implied link automatically realized ! chest bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0003462 name: viscerocranium bone xref: MA:0001482 is_a: UBERON:0003457 ! implied link automatically realized ! head bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0001704 ! viscerocranium [Term] id: UBERON:0003463 name: trunk bone xref: MA:0000512 is_a: UBERON:0001474 ! implied link automatically realized ! bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0003464 name: hindlimb bone xref: MA:0000660 is_a: UBERON:0002428 ! implied link automatically realized ! limb bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003465 name: chondrocranium bone xref: MA:0001478 is_a: UBERON:0001474 ! implied link automatically realized ! bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002241 ! chondrocranium [Term] id: UBERON:0003466 name: lower arm bone xref: MA:0000598 is_a: UBERON:0003460 ! implied link automatically realized ! arm bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002386 ! lower segment of arm [Term] id: UBERON:0003467 name: sesamoid bone of gastrocnemius xref: MA:0001378 is_a: UBERON:0001479 ! implied link automatically realized ! sesamoid bone intersection_of: UBERON:0001479 ! sesamoid bone intersection_of: part_of UBERON:0001388 ! gastrocnemius [Term] id: UBERON:0003468 name: ureteric artery xref: MA:0002074 is_a: UBERON:0001637 ! implied link automatically realized ! artery intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0000056 ! ureter [Term] id: UBERON:0003469 name: respiratory system artery xref: MA:0001804 is_a: UBERON:0001637 ! implied link automatically realized ! artery is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003470 name: artery of upper lip xref: MA:0001917 is_a: UBERON:0001637 ! implied link automatically realized ! artery intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0001834 ! upper lip [Term] id: UBERON:0003471 name: artery of lower lip xref: MA:0001916 is_a: UBERON:0001637 ! implied link automatically realized ! artery intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0001835 ! lower lip [Term] id: UBERON:0003472 name: cerebellar artery xref: MA:0001933 xref: ncithesaurus:Cerebellar_Artery is_a: UBERON:0001637 ! implied link automatically realized ! artery is_a: UBERON:0002946 ! implied link automatically realized ! regional part of cerebellum is_a: UBERON:0003499 ! implied link automatically realized ! brain blood vessel intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0002037 ! cerebellum [Term] id: UBERON:0003473 name: thoracic cavity artery xref: MA:0001902 is_a: UBERON:0001637 ! implied link automatically realized ! artery is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0003474 name: meningeal artery xref: MA:0002001 is_a: UBERON:0001637 ! implied link automatically realized ! artery intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0002360 ! meninx [Term] id: UBERON:0003475 name: ureteric vein xref: MA:0002250 is_a: UBERON:0001638 ! implied link automatically realized ! vein intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0000056 ! ureter [Term] id: UBERON:0003476 name: respiratory system venous blood vessel xref: MA:0001809 xref: MA:0001810 is_a: UBERON:0001638 ! implied link automatically realized ! vein is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003477 name: vein of upper lip xref: MA:0002255 is_a: UBERON:0001638 ! implied link automatically realized ! vein intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0001834 ! upper lip [Term] id: UBERON:0003478 name: vein of lower lip xref: MA:0002253 is_a: UBERON:0001638 ! implied link automatically realized ! vein intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0001835 ! lower lip [Term] id: UBERON:0003479 name: thoracic cavity vein xref: MA:0001903 is_a: UBERON:0001638 ! implied link automatically realized ! vein is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0003480 name: vein of clitoris xref: MA:0002252 is_a: UBERON:0001638 ! implied link automatically realized ! vein is_a: UBERON:0003520 ! implied link automatically realized ! pelvis blood vessel intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0002411 ! clitoris [Term] id: UBERON:0003481 name: tail vein xref: MA:0002233 is_a: UBERON:0001638 ! implied link automatically realized ! vein is_a: UBERON:0003524 ! implied link automatically realized ! tail blood vessel intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0002415 ! tail [Term] id: UBERON:0003482 name: vein of trabecular bone xref: MA:0002254 is_a: UBERON:0001638 ! implied link automatically realized ! vein intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0002483 ! trabecular bone [Term] id: UBERON:0003483 name: thymus lymphoid tissue xref: MA:0002673 is_a: UBERON:0001744 ! implied link automatically realized ! lymphoid tissue intersection_of: UBERON:0001744 ! lymphoid tissue intersection_of: part_of UBERON:0002370 ! thymus [Term] id: UBERON:0003484 name: eye sebaceous gland xref: MA:0002452 is_a: UBERON:0001821 ! implied link automatically realized ! sebaceous gland intersection_of: UBERON:0001821 ! sebaceous gland intersection_of: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0003485 name: vagina sebaceous gland xref: MA:0001732 is_a: UBERON:0001821 ! implied link automatically realized ! sebaceous gland intersection_of: UBERON:0001821 ! sebaceous gland intersection_of: part_of UBERON:0000996 ! vagina [Term] id: UBERON:0003486 name: mammary gland sebaceous gland xref: MA:0000794 is_a: UBERON:0001821 ! implied link automatically realized ! sebaceous gland intersection_of: UBERON:0001821 ! sebaceous gland intersection_of: part_of UBERON:0001911 ! lactiferous gland [Term] id: UBERON:0003487 name: skin sebaceous gland xref: MA:0000149 is_a: UBERON:0001821 ! implied link automatically realized ! sebaceous gland is_a: UBERON:0003297 ! implied link automatically realized ! gland of integumental system intersection_of: UBERON:0001821 ! sebaceous gland intersection_of: part_of UBERON:0002097 ! skin [Term] id: UBERON:0003488 name: abdominal mammary gland xref: MA:0000787 is_a: UBERON:0001911 ! implied link automatically realized ! lactiferous gland intersection_of: UBERON:0001911 ! lactiferous gland intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0003489 name: respiratory system capillary endothelium xref: MA:0001808 is_a: UBERON:0001915 ! implied link automatically realized ! endothelium of capillary intersection_of: UBERON:0001915 ! endothelium of capillary intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003490 name: respiratory system reticular lamina xref: MA:0001817 is_a: UBERON:0001967 ! implied link automatically realized ! reticular lamina intersection_of: UBERON:0001967 ! reticular lamina intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003491 name: trachea reticular lamina xref: MA:0001856 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003490 ! implied link automatically realized ! respiratory system reticular lamina intersection_of: UBERON:0001967 ! reticular lamina intersection_of: part_of UBERON:0001005 ! trachea [Term] id: UBERON:0003492 name: bronchus reticular lamina xref: MA:0001834 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003490 ! implied link automatically realized ! respiratory system reticular lamina intersection_of: UBERON:0001967 ! reticular lamina intersection_of: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0003493 name: trachea reticular lamina xref: MA:0001856 is_a: UBERON:0003491 ! implied link automatically realized ! trachea reticular lamina intersection_of: UBERON:0001967 ! reticular lamina intersection_of: part_of UBERON:0003126 ! vertebrate trachea [Term] id: UBERON:0003494 name: respiratory system venule xref: MA:0001813 is_a: UBERON:0001979 ! implied link automatically realized ! venule is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel intersection_of: UBERON:0001979 ! venule intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003495 name: respiratory system arteriole xref: MA:0001803 is_a: UBERON:0001980 ! implied link automatically realized ! arteriole intersection_of: UBERON:0001980 ! arteriole intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003496 name: head blood vessel xref: MA:0000575 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000033 ! head [Term] id: UBERON:0003497 name: abdomen blood vessel xref: MA:0000518 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0003498 name: heart blood vessel xref: MA:0002483 is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000948 ! heart [Term] id: UBERON:0003499 name: brain blood vessel xref: MA:0002769 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000955 ! brain [Term] id: UBERON:0003500 name: corneal blood vessel xref: MA:0001241 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000964 ! cornea [Term] id: UBERON:0003501 name: retina blood vessel xref: MA:0001317 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000966 ! retina [Term] id: UBERON:0003502 name: neck blood vessel xref: MA:0000583 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000974 ! neck [Term] id: UBERON:0003503 name: leg blood vessel xref: MA:0000669 is_a: UBERON:0003514 ! implied link automatically realized ! limb blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000978 ! leg [Term] id: UBERON:0003504 name: respiratory system blood vessel xref: MA:0001799 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003505 name: trachea blood vessel xref: MA:0001852 is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001005 ! trachea [Term] id: UBERON:0003506 name: chest blood vessel xref: MA:0000549 is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001443 ! chest [Term] id: UBERON:0003507 name: arm blood vessel xref: MA:0000591 is_a: UBERON:0003515 ! implied link automatically realized ! forelimb blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001460 ! arm [Term] id: UBERON:0003508 name: foot digit blood vessel xref: MA:0000645 is_a: UBERON:0003521 ! implied link automatically realized ! foot blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001466 ! toe [Term] id: UBERON:0003509 name: arterial blood vessel xref: MA:0000061 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001637 ! artery [Term] id: UBERON:0003510 name: eyelid blood vessel xref: MA:0001250 is_a: UBERON:0003496 ! implied link automatically realized ! head blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0003511 name: iris blood vessel xref: MA:0001290 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0001769 ! iris [Term] id: UBERON:0003512 name: lung blood vessel xref: MA:0002457 is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002048 ! lung [Term] id: UBERON:0003513 name: trunk blood vessel xref: MA:0000511 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0003514 name: limb blood vessel xref: MA:0000687 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002101 ! limb [Term] id: UBERON:0003515 name: forelimb blood vessel xref: MA:0000611 is_a: UBERON:0003514 ! implied link automatically realized ! limb blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0003516 name: hindlimb blood vessel xref: MA:0000659 is_a: UBERON:0003514 ! implied link automatically realized ! limb blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003517 name: kidney blood vessel xref: MA:0001682 xref: ZFA:0005306 is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0003518 name: main bronchus blood vessel xref: MA:0001844 is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel is_a: UBERON:0003519 ! implied link automatically realized ! thoracic cavity blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0003519 name: thoracic cavity blood vessel xref: MA:0000554 is_a: UBERON:0003834 ! implied link automatically realized ! thoracic segment blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0003520 name: pelvis blood vessel xref: MA:0000531 is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0003521 name: foot blood vessel xref: MA:0000642 is_a: UBERON:0003516 ! implied link automatically realized ! hindlimb blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002387 ! foot [Term] id: UBERON:0003522 name: hand digit blood vessel xref: MA:0000621 is_a: UBERON:0003523 ! implied link automatically realized ! hand blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002389 ! finger [Term] id: UBERON:0003523 name: hand blood vessel xref: MA:0000618 is_a: UBERON:0003507 ! implied link automatically realized ! arm blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0003524 name: tail blood vessel xref: MA:0000695 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002415 ! tail [Term] id: UBERON:0003525 name: trachea blood vessel xref: MA:0001852 is_a: UBERON:0003505 ! implied link automatically realized ! trachea blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0003126 ! vertebrate trachea [Term] id: UBERON:0003526 name: respiratory system capillary xref: MA:0001807 is_a: UBERON:0001982 ! implied link automatically realized ! capillary is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel intersection_of: UBERON:0001982 ! capillary intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003527 name: kidney capillary xref: MA:0002586 is_a: UBERON:0001982 ! implied link automatically realized ! capillary is_a: UBERON:0003517 ! implied link automatically realized ! kidney blood vessel intersection_of: UBERON:0001982 ! capillary intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0003528 name: brain grey matter xref: MA:0000810 is_a: UBERON:0002020 ! implied link automatically realized ! gray matter of neuraxis is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain intersection_of: UBERON:0002020 ! gray matter of neuraxis intersection_of: part_of UBERON:0000955 ! brain [Term] id: UBERON:0003529 name: respiratory system lymphatic vessel endothelium xref: MA:0001825 is_a: UBERON:0002042 ! implied link automatically realized ! endothelium of lymphatic vessel intersection_of: UBERON:0002042 ! endothelium of lymphatic vessel intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003530 name: foot digit skin xref: FMA:37852 xref: MA:0000650 xref: ncithesaurus:Foot_Digit_Skin is_a: UBERON:0003532 ! implied link automatically realized ! hindlimb skin intersection_of: UBERON:0002097 ! skin intersection_of: part_of UBERON:0001466 ! toe [Term] id: UBERON:0003531 name: forelimb skin xref: FMA:23101 xref: MA:0000617 is_a: UBERON:0002097 ! implied link automatically realized ! skin intersection_of: UBERON:0002097 ! skin intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0003532 name: hindlimb skin xref: FMA:23102 xref: MA:0000665 is_a: UBERON:0002097 ! implied link automatically realized ! skin intersection_of: UBERON:0002097 ! skin intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003533 name: hand digit skin xref: FMA:38304 xref: MA:0000626 xref: ncithesaurus:Hand_Digit_Skin is_a: UBERON:0001519 ! implied link automatically realized ! skin of hand is_a: UBERON:0002427 ! implied link automatically realized ! arm skin intersection_of: UBERON:0002097 ! skin intersection_of: part_of UBERON:0002389 ! finger [Term] id: UBERON:0003534 name: tail skin xref: MA:0000700 is_a: UBERON:0002097 ! implied link automatically realized ! skin intersection_of: UBERON:0002097 ! skin intersection_of: part_of UBERON:0002415 ! tail [Term] id: UBERON:0003535 name: vagus X nerve trunk xref: FMA:6221 xref: MA:0001150 is_a: UBERON:0002100 ! implied link automatically realized ! trunk intersection_of: UBERON:0002100 ! trunk intersection_of: part_of UBERON:0001759 ! vagus nerve [Term] id: UBERON:0003536 name: right lung alveolar duct xref: MA:0001785 xref: ncithesaurus:Right_Lung_Alveolar_Duct is_a: UBERON:0002173 ! implied link automatically realized ! alveolar duct intersection_of: UBERON:0002173 ! alveolar duct intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0003537 name: left lung alveolar duct xref: MA:0001776 xref: ncithesaurus:Left_Lung_Alveolar_Duct is_a: UBERON:0002173 ! implied link automatically realized ! alveolar duct intersection_of: UBERON:0002173 ! alveolar duct intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0003538 name: right lung bronchiole xref: MA:0001787 xref: ncithesaurus:Right_Lung_Bronchiole is_a: UBERON:0002186 ! implied link automatically realized ! bronchiole intersection_of: UBERON:0002186 ! bronchiole intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0003539 name: left lung bronchiole xref: MA:0001778 xref: ncithesaurus:Left_Lung_Bronchiole is_a: UBERON:0002186 ! implied link automatically realized ! bronchiole intersection_of: UBERON:0002186 ! bronchiole intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0003540 name: right lung terminal bronchiole xref: MA:0001789 xref: ncithesaurus:Right_Lung_Terminal_Bronchiole is_a: UBERON:0002187 ! implied link automatically realized ! terminal bronchiole is_a: UBERON:0003538 ! implied link automatically realized ! right lung bronchiole intersection_of: UBERON:0002187 ! terminal bronchiole intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0003541 name: left lung terminal bronchiole xref: MA:0001780 xref: ncithesaurus:Left_Lung_Terminal_Bronchiole is_a: UBERON:0002187 ! implied link automatically realized ! terminal bronchiole is_a: UBERON:0003539 ! implied link automatically realized ! left lung bronchiole intersection_of: UBERON:0002187 ! terminal bronchiole intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0003542 name: right lung respiratory bronchiole xref: MA:0001788 xref: ncithesaurus:Right_Lung_Respiratory_Bronchiole is_a: UBERON:0002188 ! implied link automatically realized ! respiratory bronchiole is_a: UBERON:0003538 ! implied link automatically realized ! right lung bronchiole intersection_of: UBERON:0002188 ! respiratory bronchiole intersection_of: part_of UBERON:0002167 ! right lung [Term] id: UBERON:0003543 name: left lung respiratory bronchiole xref: MA:0001779 xref: ncithesaurus:Left_Lung_Respiratory_Bronchiole is_a: UBERON:0002188 ! implied link automatically realized ! respiratory bronchiole is_a: UBERON:0003539 ! implied link automatically realized ! left lung bronchiole intersection_of: UBERON:0002188 ! respiratory bronchiole intersection_of: part_of UBERON:0002168 ! left lung [Term] id: UBERON:0003544 name: brain white matter xref: MA:0000820 xref: ncithesaurus:Brain_White_Matter is_a: UBERON:0002316 ! implied link automatically realized ! white matter of neuraxis is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain intersection_of: UBERON:0002316 ! white matter of neuraxis intersection_of: part_of UBERON:0000955 ! brain [Term] id: UBERON:0003545 name: brainstem white matter xref: MA:0002741 is_a: UBERON:0003544 ! implied link automatically realized ! brain white matter intersection_of: UBERON:0002316 ! white matter of neuraxis intersection_of: part_of UBERON:0002298 ! brainstem [Term] id: UBERON:0003546 name: distal convoluted tubule macula densa xref: MA:0001668 is_a: UBERON:0002335 ! implied link automatically realized ! macula densa intersection_of: UBERON:0002335 ! macula densa intersection_of: part_of UBERON:0001292 ! distal convoluted tubule [Term] id: UBERON:0003547 name: brain meninx xref: HOG:0000013 xref: MA:0000813 is_a: UBERON:0002360 ! implied link automatically realized ! meninx is_a: UBERON:0002616 ! implied link automatically realized ! regional part of brain intersection_of: UBERON:0002360 ! meninx intersection_of: part_of UBERON:0000955 ! brain [Term] id: UBERON:0003548 name: forebrain meninges xref: MA:0000883 is_a: UBERON:0002780 ! implied link automatically realized ! regional part of forebrain is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx intersection_of: UBERON:0002360 ! meninx intersection_of: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0003549 name: brain pia mater xref: MA:0000816 xref: ncithesaurus:Brain_Pia_Mater is_a: UBERON:0002361 ! implied link automatically realized ! pia mater is_a: UBERON:0003547 ! implied link automatically realized ! brain meninx intersection_of: UBERON:0002361 ! pia mater intersection_of: part_of UBERON:0000955 ! brain [Term] id: UBERON:0003550 name: forebrain pia mater xref: MA:0000886 is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges is_a: UBERON:0003549 ! implied link automatically realized ! brain pia mater intersection_of: UBERON:0002361 ! pia mater intersection_of: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0003551 name: midbrain pia mater xref: MA:0001061 is_a: UBERON:0003288 ! implied link automatically realized ! meninges of midbrain is_a: UBERON:0003549 ! implied link automatically realized ! brain pia mater intersection_of: UBERON:0002361 ! pia mater intersection_of: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0003552 name: telencephalon pia mater xref: MA:0000982 is_a: UBERON:0003289 ! implied link automatically realized ! meninges of telencephalon is_a: UBERON:0003550 ! implied link automatically realized ! forebrain pia mater intersection_of: UBERON:0002361 ! pia mater intersection_of: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0003553 name: diencephalon pia mater xref: MA:0000829 is_a: UBERON:0003290 ! implied link automatically realized ! meninges of diencephalon is_a: UBERON:0003550 ! implied link automatically realized ! forebrain pia mater intersection_of: UBERON:0002361 ! pia mater intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003554 name: hindbrain pia mater xref: MA:0000990 is_a: UBERON:0003291 ! implied link automatically realized ! meninges of hindbrain is_a: UBERON:0003549 ! implied link automatically realized ! brain pia mater intersection_of: UBERON:0002361 ! pia mater intersection_of: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0003555 name: spinal cord pia mater xref: MA:0001133 xref: ncithesaurus:Spinal_Cord_Pia_Mater is_a: UBERON:0002361 ! implied link automatically realized ! pia mater is_a: UBERON:0003292 ! implied link automatically realized ! meninges of spinal cord intersection_of: UBERON:0002361 ! pia mater intersection_of: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0003556 name: forebrain arachnoid mater xref: MA:0000884 is_a: UBERON:0002362 ! implied link automatically realized ! arachnoid mater is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges intersection_of: UBERON:0002362 ! arachnoid mater intersection_of: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0003557 name: midbrain arachnoid mater xref: MA:0001059 is_a: UBERON:0002362 ! implied link automatically realized ! arachnoid mater is_a: UBERON:0003288 ! implied link automatically realized ! meninges of midbrain intersection_of: UBERON:0002362 ! arachnoid mater intersection_of: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0003558 name: diencephalon arachnoid mater xref: MA:0000827 is_a: UBERON:0003290 ! implied link automatically realized ! meninges of diencephalon is_a: UBERON:0003556 ! implied link automatically realized ! forebrain arachnoid mater intersection_of: UBERON:0002362 ! arachnoid mater intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003559 name: hindbrain arachnoid mater xref: MA:0000988 is_a: UBERON:0002362 ! implied link automatically realized ! arachnoid mater is_a: UBERON:0003291 ! implied link automatically realized ! meninges of hindbrain intersection_of: UBERON:0002362 ! arachnoid mater intersection_of: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0003560 name: spinal cord arachnoid mater xref: MA:0001131 is_a: UBERON:0002362 ! implied link automatically realized ! arachnoid mater is_a: UBERON:0003292 ! implied link automatically realized ! meninges of spinal cord intersection_of: UBERON:0002362 ! arachnoid mater intersection_of: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0003561 name: forebrain dura mater xref: MA:0000885 is_a: UBERON:0002092 ! implied link automatically realized ! cranial dura mater is_a: UBERON:0003548 ! implied link automatically realized ! forebrain meninges intersection_of: UBERON:0002363 ! dura mater intersection_of: part_of UBERON:0001890 ! forebrain [Term] id: UBERON:0003562 name: midbrain dura mater xref: MA:0001060 is_a: UBERON:0002092 ! implied link automatically realized ! cranial dura mater is_a: UBERON:0003288 ! implied link automatically realized ! meninges of midbrain intersection_of: UBERON:0002363 ! dura mater intersection_of: part_of UBERON:0001891 ! midbrain [Term] id: UBERON:0003563 name: telencephalon dura mater xref: MA:0000981 is_a: UBERON:0003289 ! implied link automatically realized ! meninges of telencephalon is_a: UBERON:0003561 ! implied link automatically realized ! forebrain dura mater intersection_of: UBERON:0002363 ! dura mater intersection_of: part_of UBERON:0001893 ! telencephalon [Term] id: UBERON:0003564 name: diencephalon dura mater xref: MA:0000828 is_a: UBERON:0003290 ! implied link automatically realized ! meninges of diencephalon is_a: UBERON:0003561 ! implied link automatically realized ! forebrain dura mater intersection_of: UBERON:0002363 ! dura mater intersection_of: part_of UBERON:0001894 ! diencephalon [Term] id: UBERON:0003565 name: hindbrain dura mater xref: MA:0000989 is_a: UBERON:0002092 ! implied link automatically realized ! cranial dura mater is_a: UBERON:0003291 ! implied link automatically realized ! meninges of hindbrain intersection_of: UBERON:0002363 ! dura mater intersection_of: part_of UBERON:0002028 ! hindbrain [Term] id: UBERON:0003566 name: head connective tissue xref: MA:0000577 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0000033 ! head [Term] id: UBERON:0003567 name: abdomen connective tissue xref: MA:0000519 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0003568 name: neck connective tissue xref: MA:0000585 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0000974 ! neck [Term] id: UBERON:0003569 name: leg connective tissue xref: MA:0000671 is_a: UBERON:0003587 ! implied link automatically realized ! limb connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0000978 ! leg [Term] id: UBERON:0003570 name: respiratory system connective tissue xref: MA:0001814 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003571 name: trachea connective tissue xref: MA:0001853 is_a: UBERON:0003580 ! implied link automatically realized ! lower respiratory tract connective tissue is_a: UBERON:0003593 ! implied link automatically realized ! thoracic cavity connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001005 ! trachea [Term] id: UBERON:0003572 name: chest connective tissue xref: MA:0000550 is_a: UBERON:0003837 ! implied link automatically realized ! thoracic segment connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001443 ! chest [Term] id: UBERON:0003573 name: arm connective tissue xref: MA:0000593 is_a: UBERON:0003588 ! implied link automatically realized ! forelimb connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001460 ! arm [Term] id: UBERON:0003574 name: elbow connective tissue xref: MA:0000609 is_a: UBERON:0003573 ! implied link automatically realized ! arm connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001461 ! elbow [Term] id: UBERON:0003575 name: wrist connective tissue xref: MA:0000636 is_a: UBERON:0003573 ! implied link automatically realized ! arm connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001462 ! wrist [Term] id: UBERON:0003576 name: hip connective tissue xref: MA:0000656 is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001464 ! hip [Term] id: UBERON:0003577 name: knee connective tissue xref: MA:0000667 is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001465 ! knee [Term] id: UBERON:0003578 name: foot digit connective tissue xref: MA:0000647 is_a: UBERON:0003595 ! implied link automatically realized ! foot connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001466 ! toe [Term] id: UBERON:0003579 name: shoulder connective tissue xref: MA:0000632 is_a: UBERON:0003572 ! implied link automatically realized ! chest connective tissue is_a: UBERON:0003588 ! implied link automatically realized ! forelimb connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0003580 name: lower respiratory tract connective tissue xref: MA:0002409 is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001558 ! lower respiratory tract [Term] id: UBERON:0003581 name: eyelid connective tissue xref: MA:0001251 xref: ncithesaurus:Eyelid_Connective_Tissue is_a: UBERON:0003566 ! implied link automatically realized ! head connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0003582 name: nasopharynx connective tissue xref: MA:0001864 is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001728 ! nasopharynx [Term] id: UBERON:0003583 name: larynx connective tissue xref: MA:0001754 is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0003584 name: mammary gland connective tissue xref: FMA:74479 xref: MA:0002897 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0001911 ! lactiferous gland [Term] id: UBERON:0003585 name: dermis connective tissue xref: MA:0000799 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002067 ! dermis [Term] id: UBERON:0003586 name: trunk connective tissue xref: MA:0000513 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0003587 name: limb connective tissue xref: MA:0000689 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002101 ! limb [Term] id: UBERON:0003588 name: forelimb connective tissue xref: MA:0000613 is_a: UBERON:0003587 ! implied link automatically realized ! limb connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0003589 name: hindlimb connective tissue xref: MA:0000661 is_a: UBERON:0003587 ! implied link automatically realized ! limb connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003590 name: main bronchus connective tissue xref: MA:0001845 is_a: UBERON:0003592 ! implied link automatically realized ! bronchus connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002182 ! main bronchus [Term] id: UBERON:0003591 name: lobar bronchus connective tissue xref: MA:0001841 is_a: UBERON:0000114 ! implied link automatically realized ! lung connective tissue is_a: UBERON:0003592 ! implied link automatically realized ! bronchus connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002183 ! lobar bronchus [Term] id: UBERON:0003592 name: bronchus connective tissue xref: MA:0001831 xref: ncithesaurus:Bronchus_Connective_Tissue is_a: UBERON:0003580 ! implied link automatically realized ! lower respiratory tract connective tissue is_a: UBERON:0003593 ! implied link automatically realized ! thoracic cavity connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0003593 name: thoracic cavity connective tissue xref: MA:0000555 is_a: UBERON:0003837 ! implied link automatically realized ! thoracic segment connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0003594 name: pelvis connective tissue xref: MA:0000533 is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0003595 name: foot connective tissue xref: MA:0000644 is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002387 ! foot [Term] id: UBERON:0003596 name: ankle connective tissue xref: MA:0000639 is_a: UBERON:0003589 ! implied link automatically realized ! hindlimb connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002388 ! ankle [Term] id: UBERON:0003597 name: hand digit connective tissue xref: MA:0000623 is_a: UBERON:0003598 ! implied link automatically realized ! hand connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002389 ! finger [Term] id: UBERON:0003598 name: hand connective tissue xref: MA:0000620 is_a: UBERON:0003573 ! implied link automatically realized ! arm connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002398 ! hand [Term] id: UBERON:0003599 name: tail connective tissue xref: MA:0000697 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002415 ! tail [Term] id: UBERON:0003600 name: trachea connective tissue xref: MA:0001853 is_a: UBERON:0003571 ! implied link automatically realized ! trachea connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0003126 ! vertebrate trachea [Term] id: UBERON:0003601 name: neck cartilage xref: MA:0000586 is_a: UBERON:0002418 ! implied link automatically realized ! cartilage intersection_of: UBERON:0002418 ! cartilage intersection_of: part_of UBERON:0000974 ! neck [Term] id: UBERON:0003602 name: trachea cartilage xref: MA:0001857 xref: ncithesaurus:Trachea_Cartilage is_a: UBERON:0003603 ! implied link automatically realized ! lower respiratory tract cartilage intersection_of: UBERON:0002418 ! cartilage intersection_of: part_of UBERON:0001005 ! trachea [Term] id: UBERON:0003603 name: lower respiratory tract cartilage xref: MA:0001819 xref: ncithesaurus:Lower_Respiratory_Tract_Cartilage is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0003406 ! implied link automatically realized ! cartilage of respiratory system intersection_of: UBERON:0002418 ! cartilage intersection_of: part_of UBERON:0001558 ! lower respiratory tract [Term] id: UBERON:0003604 name: trachea cartilage xref: MA:0001857 xref: ncithesaurus:Trachea_Cartilage is_a: UBERON:0003602 ! implied link automatically realized ! trachea cartilage intersection_of: UBERON:0002418 ! cartilage intersection_of: part_of UBERON:0003126 ! vertebrate trachea [Term] id: UBERON:0003605 name: eye skin gland xref: MA:0002451 is_a: UBERON:0002419 ! implied link automatically realized ! skin gland intersection_of: UBERON:0002419 ! skin gland intersection_of: part_of UBERON:0000019 ! camera-type eye [Term] id: UBERON:0003606 name: limb long bone xref: MA:0000298 is_a: UBERON:0002428 ! implied link automatically realized ! limb bone is_a: UBERON:0002495 ! implied link automatically realized ! long bone intersection_of: UBERON:0002495 ! long bone intersection_of: part_of UBERON:0002101 ! limb [Term] id: UBERON:0003607 name: forelimb long bone xref: MA:0000299 is_a: UBERON:0003606 ! implied link automatically realized ! limb long bone intersection_of: UBERON:0002495 ! long bone intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0003608 name: hindlimb long bone xref: MA:0000300 is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone is_a: UBERON:0003606 ! implied link automatically realized ! limb long bone intersection_of: UBERON:0002495 ! long bone intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003609 name: aorta elastic tissue xref: MA:0002859 is_a: UBERON:0003614 ! implied link automatically realized ! blood vessel elastic tissue intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0000947 ! aorta [Term] id: UBERON:0003610 name: heart elastic tissue xref: MA:0002858 is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue is_a: UBERON:0003613 ! implied link automatically realized ! cardiovascular system elastic tissue intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0000948 ! heart [Term] id: UBERON:0003611 name: respiratory system elastic tissue xref: MA:0001820 is_a: UBERON:0002521 ! implied link automatically realized ! elastic tissue is_a: UBERON:0003570 ! implied link automatically realized ! respiratory system connective tissue intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003612 name: trachea elastic tissue xref: MA:0001861 is_a: UBERON:0003571 ! implied link automatically realized ! trachea connective tissue is_a: UBERON:0003611 ! implied link automatically realized ! respiratory system elastic tissue intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0001005 ! trachea [Term] id: UBERON:0003613 name: cardiovascular system elastic tissue xref: MA:0002857 is_a: UBERON:0002521 ! implied link automatically realized ! elastic tissue intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0001009 ! circulatory system [Term] id: UBERON:0003614 name: blood vessel elastic tissue xref: MA:0002856 is_a: UBERON:0003613 ! implied link automatically realized ! cardiovascular system elastic tissue intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0001981 ! blood vessel [Term] id: UBERON:0003615 name: lung elastic tissue xref: MA:0002860 is_a: UBERON:0000114 ! implied link automatically realized ! lung connective tissue is_a: UBERON:0003611 ! implied link automatically realized ! respiratory system elastic tissue intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0002048 ! lung [Term] id: UBERON:0003616 name: bronchus elastic tissue xref: MA:0001838 xref: ncithesaurus:Bronchus_Elastic_Tissue is_a: UBERON:0003592 ! implied link automatically realized ! bronchus connective tissue is_a: UBERON:0003611 ! implied link automatically realized ! respiratory system elastic tissue intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0002185 ! bronchus [Term] id: UBERON:0003617 name: trachea elastic tissue xref: MA:0001861 is_a: UBERON:0003600 ! implied link automatically realized ! trachea connective tissue is_a: UBERON:0003612 ! implied link automatically realized ! trachea elastic tissue intersection_of: UBERON:0002521 ! elastic tissue intersection_of: part_of UBERON:0003126 ! vertebrate trachea [Term] id: UBERON:0003618 name: aorta tunica media xref: FMA:74433 xref: MA:0002903 is_a: UBERON:0002522 ! implied link automatically realized ! tunica media intersection_of: UBERON:0002522 ! tunica media intersection_of: part_of UBERON:0000947 ! aorta [Term] id: UBERON:0003619 name: aorta tunica intima xref: FMA:74419 xref: MA:0002904 is_a: UBERON:0002523 ! implied link automatically realized ! tunica intima intersection_of: UBERON:0002523 ! tunica intima intersection_of: part_of UBERON:0000947 ! aorta [Term] id: UBERON:0003620 name: hand digit 1 phalanx xref: MA:0001389 xref: ncithesaurus:Hand_Digit_1_Phalanx is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0001463 ! hand digit 1 [Term] id: UBERON:0003622 name: hand digit 2 def: "2nd digit of the hand in mouse and human and homologs." [Wikipedia:Index_finger] comment: comment: This class represents all instances of the 2nd digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ synonym: "2nd digit of hand" EXACT [] synonym: "2nd finger" EXACT [] synonym: "index finger" NARROW [] synonym: "second finger" EXACT [] xref: FMA:24946 xref: MA:0000455 xref: ncithesaurus:Hand_Digit_2 is_a: UBERON:0002389 ! finger [Term] id: UBERON:0003623 name: hand digit 3 def: "3rd digit of the hand in mouse and human and homologs." [Wikipedia:Middle_finger] comment: comment: This class represents all instances of the 3rd digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ synonym: "3rd digit of hand" EXACT [] synonym: "3rd finger" EXACT [] synonym: "middle finger" NARROW [] synonym: "third finger" EXACT [] xref: FMA:24947 xref: MA:0000456 xref: ncithesaurus:Hand_Digit_3 is_a: UBERON:0002389 ! finger [Term] id: UBERON:0003624 name: hand digit 4 def: "4th digit of the hand in mouse and human and homologs." [Wikipedia:Ring_finger] comment: comment: This class represents all instances of the 4th digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ synonym: "4th digit of hand" EXACT [] synonym: "4th finger" EXACT [] synonym: "fourth finger" EXACT [] synonym: "ring finger" NARROW [] xref: FMA:24948 xref: MA:0000457 xref: ncithesaurus:Hand_Digit_4 is_a: UBERON:0002389 ! finger [Term] id: UBERON:0003625 name: hand digit 5 def: "5th digit of the hand in mouse and human and homologs." [Wikipedia:Little_finger] comment: comment: This class represents all instances of the 5th digit of the hand in human and mouse, and all homologues of this digit in other vertebrates. See http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2553264/ synonym: "5th digit of hand" EXACT [] synonym: "5th finger" EXACT [] synonym: "fifth finger" EXACT [] synonym: "little finger" NARROW [] xref: FMA:24949 xref: MA:0000458 xref: ncithesaurus:Hand_Digit_5 is_a: UBERON:0002389 ! finger [Term] id: UBERON:0003631 name: foot digit 1 def: "1st digit of the foot in mouse and human and homologs." [Wikipedia:Big_toe] synonym: "big toe" NARROW [] xref: FMA:25047 xref: MA:0000465 xref: ncithesaurus:Foot_Digit_1 is_a: UBERON:0001466 ! toe [Term] id: UBERON:0003632 name: foot digit 2 def: "2nd digit of the foot in mouse and human and homologs." [UBERON:cjm] synonym: "2nd toe" NARROW [] xref: FMA:25048 xref: MA:0000466 xref: ncithesaurus:Foot_Digit_2 is_a: UBERON:0001466 ! toe [Term] id: UBERON:0003633 name: foot digit 3 def: "3rd digit of the foot in mouse and human and homologs." [UBERON:cjm] synonym: "3rd toe" NARROW [] xref: FMA:25051 xref: MA:0000467 xref: ncithesaurus:Foot_Digit_3 is_a: UBERON:0001466 ! toe [Term] id: UBERON:0003634 name: foot digit 4 def: "4th digit of the foot in mouse and human and homologs." [UBERON:cjm] synonym: "4th toe" NARROW [] xref: FMA:25052 xref: MA:0000468 xref: ncithesaurus:Foot_Digit_4 is_a: UBERON:0001466 ! toe [Term] id: UBERON:0003635 name: foot digit 5 def: "5th digit of the foot in mouse and human and homologs." [UBERON:cjm] synonym: "5th toe" NARROW [] synonym: "little toe" NARROW [] xref: FMA:25053 xref: MA:0000469 xref: ncithesaurus:Foot_Digit_5 is_a: UBERON:0001466 ! toe [Term] id: UBERON:0003636 name: hand digit 2 phalanx xref: MA:0001390 xref: ncithesaurus:Hand_Digit_2_Phalanx is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003622 ! hand digit 2 [Term] id: UBERON:0003637 name: hand digit 3 phalanx xref: MA:0001391 xref: ncithesaurus:Hand_Digit_3_Phalanx is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003623 ! hand digit 3 [Term] id: UBERON:0003638 name: hand digit 4 phalanx xref: MA:0001392 xref: ncithesaurus:Hand_Digit_4_Phalanx is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003624 ! hand digit 4 [Term] id: UBERON:0003639 name: hand digit 5 phalanx xref: MA:0001393 xref: ncithesaurus:Hand_Digit_5_Phalanx is_a: UBERON:0001436 ! implied link automatically realized ! phalanx of finger intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003625 ! hand digit 5 [Term] id: UBERON:0003640 name: foot digit 1 phalanx xref: MA:0001381 xref: MA:0001384 xref: MA:0001385 xref: ncithesaurus:Foot_Digit_1_Phalanx is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003631 ! foot digit 1 [Term] id: UBERON:0003641 name: foot digit 2 phalanx xref: MA:0001382 xref: ncithesaurus:Foot_Digit_2_Phalanx is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003632 ! foot digit 2 [Term] id: UBERON:0003642 name: foot digit 3 phalanx xref: MA:0001383 xref: ncithesaurus:Foot_Digit_3_Phalanx is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003633 ! foot digit 3 [Term] id: UBERON:0003643 name: respiratory system arterial blood vessel xref: MA:0001800 is_a: UBERON:0003504 ! implied link automatically realized ! respiratory system blood vessel is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel intersection_of: UBERON:0003509 ! arterial blood vessel intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003644 name: kidney arterial blood vessel xref: MA:0002578 is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel is_a: UBERON:0003517 ! implied link automatically realized ! kidney blood vessel intersection_of: UBERON:0003509 ! arterial blood vessel intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0003645 name: metacarpal bone of digit 1 xref: FMA:23899 xref: MA:0001364 is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: part_of UBERON:0001463 ! hand digit 1 [Term] id: UBERON:0003646 name: metacarpal bone of digit 2 xref: FMA:23900 xref: MA:0001365 is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: part_of UBERON:0003622 ! hand digit 2 [Term] id: UBERON:0003647 name: metacarpal bone of digit 3 xref: FMA:23901 xref: MA:0001366 is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: part_of UBERON:0003623 ! hand digit 3 [Term] id: UBERON:0003648 name: metacarpal bone of digit 4 xref: FMA:23902 xref: MA:0001367 is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: part_of UBERON:0003624 ! hand digit 4 [Term] id: UBERON:0003649 name: metacarpal bone of digit 5 xref: FMA:23903 xref: MA:0001368 is_a: UBERON:0002374 ! implied link automatically realized ! metacarpal bone intersection_of: UBERON:0002374 ! metacarpal bone intersection_of: part_of UBERON:0003625 ! hand digit 5 [Term] id: UBERON:0003650 name: metatarsal bone of digit 1 xref: FMA:24502 xref: MA:0001369 is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: part_of UBERON:0003631 ! foot digit 1 [Term] id: UBERON:0003651 name: metatarsal bone of digit 2 xref: FMA:24503 xref: MA:0001370 is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: part_of UBERON:0003632 ! foot digit 2 [Term] id: UBERON:0003652 name: metatarsal bone of digit 3 xref: FMA:24504 xref: MA:0001371 is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: part_of UBERON:0003633 ! foot digit 3 [Term] id: UBERON:0003653 name: metatarsal bone of digit 4 xref: FMA:24505 xref: MA:0001372 is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: part_of UBERON:0003634 ! foot digit 4 [Term] id: UBERON:0003654 name: metatarsal bone of digit 5 xref: FMA:24506 xref: MA:0001373 is_a: UBERON:0001448 ! implied link automatically realized ! metatarsal bone intersection_of: UBERON:0001448 ! metatarsal bone intersection_of: part_of UBERON:0003635 ! foot digit 5 [Term] id: UBERON:0003655 name: molar tooth xref: FMA:55638 xref: MA:0000350 xref: ncithesaurus:Molar_Tooth is_a: UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003656 name: carpal/tarsal bone xref: MA:0000295 is_a: UBERON:0002428 ! limb bone [Term] id: UBERON:0003657 name: limb joint xref: MA:0000691 is_a: UBERON:0000982 ! implied link automatically realized ! joint intersection_of: UBERON:0000982 ! joint intersection_of: part_of UBERON:0002101 ! limb [Term] id: UBERON:0003658 name: hip muscle xref: MA:0000657 is_a: UBERON:0001497 ! implied link automatically realized ! muscle of pelvic girdle intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001464 ! hip [Term] id: UBERON:0003659 name: foot digit muscle xref: MA:0000648 is_a: UBERON:0001498 ! implied link automatically realized ! muscle of foot intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001466 ! toe [Term] id: UBERON:0003660 name: eyelid muscle xref: MA:0000269 xref: ncithesaurus:Eyelid_Muscle is_a: UBERON:0000020 ! implied link automatically realized ! sense organ is_a: UBERON:0002376 ! implied link automatically realized ! muscle of head intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001711 ! eyelid [Term] id: UBERON:0003661 name: limb muscle xref: MA:0000692 is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002101 ! limb [Term] id: UBERON:0003662 name: forelimb muscle xref: BTO:0000479 xref: MA:0000615 is_a: UBERON:0003661 ! implied link automatically realized ! limb muscle intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0003663 name: hindlimb muscle xref: EFO:0001928 xref: MA:0000663 is_a: UBERON:0003661 ! implied link automatically realized ! limb muscle intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003664 name: hand digit muscle xref: MA:0000624 is_a: UBERON:0001500 ! implied link automatically realized ! muscle of hand intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002389 ! finger [Term] id: UBERON:0003665 name: tail muscle xref: BTO:0001905 xref: MA:0000699 is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002415 ! tail [Term] id: UBERON:0003666 name: upper jaw molar xref: MA:0001603 xref: ncithesaurus:Upper_Jaw_Molar is_a: UBERON:0003267 ! implied link automatically realized ! tooth of upper jaw is_a: UBERON:0003655 ! implied link automatically realized ! molar tooth intersection_of: UBERON:0003655 ! molar tooth intersection_of: part_of UBERON:0001709 ! upper jaw [Term] id: UBERON:0003667 name: lower jaw molar xref: MA:0001602 xref: ncithesaurus:Lower_Jaw_Molar is_a: UBERON:0003268 ! implied link automatically realized ! tooth of lower jaw is_a: UBERON:0003655 ! implied link automatically realized ! molar tooth intersection_of: UBERON:0003655 ! molar tooth intersection_of: part_of UBERON:0001710 ! lower jaw [Term] id: UBERON:0003668 name: synovial bursa def: "a small fluid-filled sac lined by synovial membrane with an inner capillary layer of slimy fluid. It provides a cushion between bones and tendons and/or muscles around a joint. This helps to reduce friction between the bones and allows free movement. Bursae are filled with synovial fluid and are found around most major joints of the body." [Wikipedia:Synovial_bursa] comment: See GO:0048540 synonym: "bursa" EXACT [FMA:9692] xref: FMA:9692 xref: GAID:252 xref: ncithesaurus:Synovial_Bursa is_a: UBERON:0000062 ! organ [Term] id: UBERON:0003669 name: fascia lata xref: FMA:13902 xref: GAID:117 xref: ncithesaurus:Fascia_Lata is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0003670 name: smegma xref: FMA:19656 xref: GAID:1170 xref: ncithesaurus:Smegma is_a: UBERON:0000456 ! secretion [Term] id: UBERON:0003671 name: anterior cruciate ligament xref: FMA:44614 xref: GAID:122 xref: ncithesaurus:Anterior_Cruciate_Ligament is_a: UBERON:0000211 ! ligament relationship: constitutional_part_of UBERON:0001485 ! knee joint [Term] id: UBERON:0003672 name: dentition synonym: "dental plate" RELATED [] synonym: "dentition" BROAD [] synonym: "pharyngeal teeth" RELATED [] synonym: "set of teeth" EXACT [FMA:75150] synonym: "teeth" EXACT [FMA:75150] synonym: "teeth" RELATED [] synonym: "teeth set" EXACT [FMA:75150] xref: FMA:75150 xref: GAID:1249 xref: ncithesaurus:Dentition xref: TAO:0000644 xref: ZFA:0000644 is_a: UBERON:0000061 ! anatomical structure relationship: has_part UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003673 name: ligamentum flavum synonym: "flaval ligament" RELATED [GAID:126] xref: FMA:13423 xref: GAID:126 xref: ncithesaurus:Ligamentum_Flavum is_a: UBERON:0000211 ! ligament [Term] id: UBERON:0003674 name: cuspid synonym: "canine teeth" RELATED [GAID:1262] synonym: "canine tooth" RELATED [GAID:1262] synonym: "cuspid" EXACT [FMA:55636] xref: FMA:55636 xref: GAID:1262 is_a: UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003675 name: tooth crown synonym: "anatomical crown" EXACT [FMA:55623] synonym: "tooth crown" EXACT [FMA:55623] xref: FMA:55623 xref: GAID:1275 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003676 name: patellar ligament synonym: "central band of tendon of quadriceps femoris" EXACT [FMA:44581] synonym: "ligamentum patella" EXACT [FMA:44581] xref: FMA:44581 xref: GAID:128 xref: ncithesaurus:Patellar_Ligament is_a: UBERON:0000211 ! ligament relationship: constitutional_part_of UBERON:0001485 ! knee joint [Term] id: UBERON:0003677 name: tooth root synonym: "radix corona" EXACT [FMA:55624] synonym: "tooth root" EXACT [FMA:55624] xref: FMA:55624 xref: GAID:1280 is_a: UBERON:0000063 ! organ segment relationship: attached_to UBERON:0001091 ! calcareous tooth relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003678 name: tooth apex synonym: "apical foramen" RELATED [GAID:1281] synonym: "tooth apex" EXACT [FMA:63000] synonym: "tooth apice" RELATED [GAID:1281] xref: FMA:63000 xref: GAID:1281 is_a: UBERON:0000015 ! anatomical boundary relationship: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003679 name: mouth floor synonym: "floor of mouth" EXACT [FMA:86592] synonym: "sublingual region" RELATED [GAID:1283] xref: FMA:86592 xref: GAID:1283 is_a: UBERON:0000061 ! anatomical structure relationship: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0003680 name: posterior cruciate ligament xref: FMA:44617 xref: GAID:129 xref: ncithesaurus:Posterior_Cruciate_Ligament is_a: UBERON:0000211 ! ligament relationship: constitutional_part_of UBERON:0001485 ! knee joint [Term] id: UBERON:0003681 name: masticatory muscle synonym: "masticatory muscles" EXACT [FMA:71437] synonym: "masticatory muscles set" EXACT [FMA:71437] xref: EFO:0001424 xref: FMA:71437 xref: GAID:145 is_a: UBERON:0001630 ! muscle organ [Term] id: UBERON:0003682 name: palatal muscle synonym: "palatal muscle" EXACT [FMA:46726] synonym: "palate muscle" EXACT [FMA:46726] synonym: "palatine muscle" EXACT [FMA:46726] xref: FMA:46726 xref: GAID:151 xref: ncithesaurus:Palatal_Muscle is_a: UBERON:0002376 ! muscle of head [Term] id: UBERON:0003683 name: rotator cuff synonym: "musculotendinous cuff" EXACT [FMA:37018] synonym: "rotator cuff" EXACT [FMA:37018] xref: FMA:37018 xref: GAID:160 xref: ncithesaurus:Rotator_Cuff is_a: UBERON:0000477 ! anatomical cluster relationship: constitutional_part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0003684 name: abdominal cavity synonym: "cavitas abdominis" RELATED [GAID:17] synonym: "cavity of abdominal compartment" EXACT [FMA:12266] synonym: "cavity of compartment of abdomen" EXACT [FMA:12266] synonym: "space of abdominal compartment" EXACT [FMA:12266] xref: EFO:0000213 xref: FMA:12266 xref: GAID:17 xref: ncithesaurus:Abdominal_Cavity is_a: UBERON:0002323 ! body cavity relationship: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0003685 name: cranial suture synonym: "cranial sutures" EXACT [FMA:71385] synonym: "cranial sutures set" EXACT [FMA:71385] xref: FMA:71385 xref: GAID:211 xref: MA:0001475 is_a: UBERON:0000969 ! suture intersection_of: UBERON:0000969 ! suture intersection_of: part_of UBERON:0003128 ! cranium [Term] id: UBERON:0003686 name: tooth socket synonym: "alveolus dentali" RELATED [GAID:217] synonym: "alveolus dentalis" RELATED [GAID:217] synonym: "dental alveolus" RELATED [GAID:217] synonym: "dental alveolus" EXACT [FMA:57490] xref: FMA:57490 xref: GAID:217 is_a: UBERON:0002553 ! anatomical cavity [Term] id: UBERON:0003687 name: foramen magnum xref: FMA:75306 xref: GAID:228 xref: ncithesaurus:Foramen_Magnum is_a: UBERON:0001676 ! occipital bone [Term] id: UBERON:0003688 name: omentum xref: FMA:14650 xref: GAID:23 xref: ncithesaurus:Omentum is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0001178 ! visceral peritoneum [Term] id: UBERON:0003689 name: sella turcica xref: FMA:54709 xref: GAID:231 xref: ncithesaurus:Sella_Turcica is_a: UBERON:0001677 ! sphenoid bone [Term] id: UBERON:0003690 name: sacrum synonym: "sacral bone" EXACT [FMA:16202] synonym: "sacrum [sacral vertebrae I-V]" EXACT [FMA:16202] xref: FMA:16202 xref: GAID:241 xref: ncithesaurus:Sacral_Bone is_a: UBERON:0001130 ! vertebral column relationship: part_of UBERON:0001130 ! vertebral column relationship: part_of UBERON:0002090 ! axial skeleton [Term] id: UBERON:0003691 name: epidural space synonym: "extradural space" EXACT [FMA:71228] xref: FMA:71228 xref: GAID:243 is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0003692 name: acromioclavicular joint xref: FMA:25898 xref: GAID:249 xref: ncithesaurus:Acromioclavicular_Joint is_a: UBERON:0000982 ! joint is_a: UBERON:0003657 ! implied link automatically realized ! limb joint relationship: constitutional_part_of UBERON:0001467 ! shoulder [Term] id: UBERON:0003693 name: retroperitoneal space synonym: "retroperitoneum" EXACT [FMA:15080] xref: FMA:15080 xref: GAID:25 xref: ncithesaurus:Retroperitoneum is_a: UBERON:0000464 ! anatomical space [Term] id: UBERON:0003694 name: atlanto-axial joint synonym: "atlanto axial joint" RELATED [GAID:250] synonym: "atlantoaxial joint" RELATED [GAID:250] xref: FMA:25524 xref: GAID:250 xref: ncithesaurus:Atlanto-axial_Joint is_a: UBERON:0000982 ! joint is_a: UBERON:0003657 ! implied link automatically realized ! limb joint [Term] id: UBERON:0003695 name: metacarpophalangeal joint synonym: "metacarpal joint" EXACT [FMA:35246] synonym: "mp joint" EXACT [FMA:35246] xref: FMA:35246 xref: GAID:255 xref: ncithesaurus:Metacarpophalangeal_Joint is_a: UBERON:0002217 ! synovial joint relationship: attached_to UBERON:0002374 ! metacarpal bone [Term] id: UBERON:0003696 name: metatarsophalangeal joint synonym: "metatarsal joint" EXACT [FMA:35222] xref: FMA:35222 xref: GAID:258 xref: ncithesaurus:Metatarsophalangeal_Joint is_a: UBERON:0001487 ! joint of foot relationship: attached_to UBERON:0001448 ! metatarsal bone [Term] id: UBERON:0003697 name: abdominal wall synonym: "abdominal wall" EXACT [FMA:10429] xref: FMA:10429 xref: GAID:26 is_a: UBERON:0000060 ! anatomical wall intersection_of: UBERON:0000060 ! anatomical wall intersection_of: part_of UBERON:0000916 ! abdomen [Term] id: UBERON:0003698 name: subtalar joint synonym: "subtalar joint" EXACT [FMA:35198] synonym: "talocalcaneal joint" RELATED [GAID:260] xref: FMA:35198 xref: GAID:260 xref: ncithesaurus:Subtalar_Joint is_a: UBERON:0001487 ! joint of foot is_a: UBERON:0002217 ! synovial joint [Term] id: UBERON:0003699 name: pubic symphysis synonym: "pubic symphyse" RELATED [GAID:267] synonym: "symphysis pubis" EXACT [FMA:16950] xref: FMA:16950 xref: GAID:267 is_a: UBERON:0000982 ! joint is_a: UBERON:0002216 ! symphysis [Term] id: UBERON:0003700 name: temporomandibular joint xref: BTO:0003674 xref: FMA:54832 xref: GAID:272 xref: MA:0002899 is_a: UBERON:0000982 ! joint is_a: UBERON:0003657 ! implied link automatically realized ! limb joint relationship: constitutional_part_of UBERON:0000165 ! mouth [Term] id: UBERON:0003701 name: achilles tendon synonym: "achilles tendon" EXACT [FMA:51061] xref: FMA:51061 xref: GAID:277 xref: ncithesaurus:Achilles_Tendon is_a: UBERON:0000043 ! tendon relationship: part_of UBERON:0001665 ! triceps surae [Term] id: UBERON:0003702 name: inguinal canal xref: FMA:19928 xref: GAID:28 is_a: UBERON:0001062 ! anatomical entity [Term] id: UBERON:0003703 name: extrahepatic bile duct synonym: "extrahepatic biliary system" RELATED [GAID:281] xref: FMA:14678 xref: GAID:281 xref: ncithesaurus:Extrahepatic_Bile_Duct is_a: UBERON:0002394 ! bile duct [Term] id: UBERON:0003704 name: intrahepatic bile duct xref: FMA:15766 xref: GAID:287 xref: ncithesaurus:Intrahepatic_Bile_Duct xref: ZFA:0005169 is_a: UBERON:0002394 ! bile duct [Term] id: UBERON:0003705 name: meckel's diverticulum synonym: "diverticulum of meckel" EXACT [FMA:14967] synonym: "meckel diverticulum" RELATED [GAID:317] synonym: "meckel's diverticulum" EXACT [FMA:14967] synonym: "meckels diverticulum" RELATED [GAID:317] xref: FMA:14967 xref: GAID:317 is_a: UBERON:0000063 ! organ segment relationship: part_of UBERON:0002116 ! ileum [Term] id: UBERON:0003706 name: vocal cord synonym: "true vocal cord" EXACT [FMA:55457] synonym: "vocal cord" EXACT [FMA:55457] synonym: "vocal fold" RELATED [GAID:344] xref: FMA:55457 xref: GAID:344 xref: ncithesaurus:Vocal_Cord is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001737 ! larynx [Term] id: UBERON:0003707 name: sinus of valsalva synonym: "aortic sinus" RELATED [GAID:472] synonym: "sinus of valsalva" EXACT [FMA:3745] synonym: "valsalva sinus" RELATED [GAID:472] xref: FMA:3745 xref: GAID:472 is_a: UBERON:0000947 ! aorta is_a: UBERON:0003509 ! implied link automatically realized ! arterial blood vessel relationship: part_of UBERON:0000947 ! aorta [Term] id: UBERON:0003708 name: carotid sinus xref: FMA:50094 xref: GAID:482 is_a: UBERON:0001530 ! common carotid artery [Term] id: UBERON:0003709 name: circle of willis synonym: "cerebral arterial circle" RELATED [GAID:486] synonym: "circle of willis" EXACT [FMA:50454] synonym: "willis circle" RELATED [GAID:486] xref: FMA:50454 xref: GAID:486 is_a: UBERON:0001637 ! artery [Term] id: UBERON:0003710 name: vasa vasorum xref: FMA:77433 xref: GAID:526 xref: ncithesaurus:Vasa_Vasorum is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0003711 name: brachiocephalic vein synonym: "brachiocephalic venous tree" EXACT [FMA:4723] synonym: "innominate vein" RELATED [GAID:529] synonym: "innominate vein" EXACT [FMA:4723] xref: FMA:4723 xref: GAID:529 xref: ncithesaurus:Innominate_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0003712 name: cavernous sinus xref: FMA:50772 xref: GAID:532 xref: ncithesaurus:Cavernous_Sinus is_a: UBERON:0001638 ! vein [Term] id: UBERON:0003713 name: splenic vein xref: FMA:14331 xref: GAID:541 xref: ncithesaurus:Splenic_Vein is_a: UBERON:0001638 ! vein [Term] id: UBERON:0003714 name: nerve tissue synonym: "nerve tissue" EXACT [FMA:9642] synonym: "nervous tissue" EXACT [FMA:9642] synonym: "neural tissue" EXACT [FMA:9642] xref: FMA:9642 xref: GAID:609 xref: ncithesaurus:Nervous_Tissue is_a: UBERON:0000479 ! portion of tissue relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0003715 name: splanchnic nerve xref: FMA:5883 xref: GAID:800 is_a: UBERON:0001021 ! nerve relationship: part_of UBERON:0000013 ! sympathetic nervous system [Term] id: UBERON:0003716 name: recurrent laryngeal nerve synonym: "inferior laryngeal nerve" RELATED [GAID:804] xref: FMA:6246 xref: GAID:804 is_a: UBERON:0002003 ! peripheral nerve relationship: branch_of UBERON:0001759 ! vagus nerve [Term] id: UBERON:0003717 name: golgi-mazzoni corpuscle synonym: "golgi mazzoni corpuscle" RELATED [GAID:817] synonym: "golgi-mazzoni corpuscle" EXACT [FMA:83609] xref: FMA:83609 xref: GAID:817 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0003718 name: muscle spindle synonym: "muscle stretch receptor" RELATED [GAID:819] synonym: "neuromuscular spindle" RELATED [GAID:819] synonym: "neuromuscular spindle" EXACT [FMA:83607] xref: FMA:83607 xref: GAID:819 xref: ncithesaurus:Muscle_Spindle is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0001016 ! nervous system [Term] id: UBERON:0003719 name: pacinian corpuscle xref: FMA:83604 xref: GAID:820 is_a: UBERON:0000477 ! anatomical cluster relationship: part_of UBERON:0000010 ! peripheral nervous system [Term] id: UBERON:0003720 name: anterior cranial fossa xref: FMA:9682 xref: GAID:83 xref: ncithesaurus:Anterior_Fossa is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0003721 name: lingual nerve xref: FMA:53218 xref: GAID:835 is_a: UBERON:0001021 ! nerve relationship: branch_of UBERON:0000375 ! mandibular nerve [Term] id: UBERON:0003722 name: middle cranial fossa xref: FMA:54369 xref: GAID:84 xref: ncithesaurus:Middle_Fossa is_a: UBERON:0002553 ! anatomical cavity relationship: part_of UBERON:0000033 ! head [Term] id: UBERON:0003723 name: vestibular nerve synonym: "scarpa ganglion" RELATED [GAID:840] synonym: "scarpa's ganglion" RELATED [GAID:840] synonym: "scarpas ganglion" RELATED [GAID:840] synonym: "vestibular root of acoustic nerve" EXACT [FMA:53401] synonym: "vestibular root of eighth cranial nerve" EXACT [FMA:53401] xref: FMA:53401 xref: GAID:840 xref: ncithesaurus:Vestibular_Nerve is_a: UBERON:0001785 ! cranial nerve relationship: branch_of UBERON:0001648 ! vestibulocochlear nerve [Term] id: UBERON:0003724 name: musculocutaneous nerve synonym: "casserio's nerve" EXACT [FMA:37064] xref: FMA:37064 xref: GAID:844 is_a: UBERON:0002003 ! peripheral nerve [Term] id: UBERON:0003725 name: cervical plexus synonym: "cervical plexus" EXACT [FMA:5904] xref: FMA:5904 xref: GAID:847 is_a: UBERON:0001813 ! somatic nerve plexus [Term] id: UBERON:0003726 name: thoracic nerve synonym: "pectoral nerve" RELATED [GAID:857] synonym: "thoracic spinal nerve" EXACT [FMA:5860] xref: FMA:5860 xref: GAID:857 is_a: UBERON:0001780 ! spinal nerve [Term] id: UBERON:0003727 name: intercostal nerve synonym: "anterior ramus of thoracic nerve" EXACT [FMA:6028] synonym: "anterior ramus of thoracic spinal nerve" EXACT [FMA:6028] synonym: "ramus anterior, nervus thoracicus" EXACT [FMA:6028] synonym: "thoracic anterior ramus" EXACT [FMA:6028] synonym: "ventral ramus of thoracic spinal nerve" EXACT [FMA:6028] xref: FMA:6028 xref: GAID:858 xref: ncithesaurus:Intercostal_Nerve is_a: UBERON:0001780 ! spinal nerve [Term] id: UBERON:0003728 name: mediastinum synonym: "mediastinal part of chest" EXACT [FMA:9826] xref: FMA:9826 xref: GAID:94 xref: ncithesaurus:Mediastinum is_a: UBERON:0002224 ! thoracic cavity [Term] id: UBERON:0003729 name: mouth mucosa synonym: "buccal mucosa" RELATED [GAID:951] synonym: "mouth mucosa" EXACT [FMA:59660] synonym: "mucous membrane of mouth" EXACT [FMA:59660] synonym: "oral mucosa" RELATED [GAID:951] synonym: "oral part of viscerocranial mucosa" EXACT [FMA:59660] xref: FMA:59660 xref: GAID:951 is_a: UBERON:0000344 ! mucosa intersection_of: UBERON:0000344 ! mucosa intersection_of: part_of UBERON:0000165 ! mouth [Term] id: UBERON:0003820 name: prostate bud def: "A region of the fetal urogenital sinus epithelium destined to become the prostate[GO]." [GO:0060513] synonym: "prostatic bud" EXACT [] is_a: UBERON:0002050 ! embryonic structure [Term] id: UBERON:0003821 name: metacarpal/metatarsal bone synonym: "metacarpal or metatarsal bone" EXACT [] synonym: "metacarpal/metatarsal" EXACT [] xref: MA:0000301 union_of: UBERON:0001448 ! metatarsal bone union_of: UBERON:0002374 ! metacarpal bone [Term] id: UBERON:0003822 name: upper arm synonym: "forearm" EXACT [] synonym: "Proximal segment of free upper limb" EXACT [] synonym: "stylopod of arm" EXACT [] xref: BTO:0001447 xref: MA:0000035 xref: ncithesaurus:Forearm is_a: UBERON:0002472 ! stylopod intersection_of: UBERON:0002472 ! stylopod intersection_of: part_of UBERON:0001460 ! arm relationship: part_of UBERON:0001460 ! arm [Term] id: UBERON:0003823 name: lower leg synonym: "calf" NARROW [] synonym: "intermediate segment of free lower limb" EXACT [] synonym: "zeugopod of leg" EXACT [] xref: MA:0000051 is_a: UBERON:0002471 ! zeugopod intersection_of: UBERON:0002471 ! zeugopod intersection_of: part_of UBERON:0002103 ! hindlimb relationship: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003824 name: thoracic segment nerve xref: MA:0000562 is_a: UBERON:0001021 ! implied link automatically realized ! nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0000915 ! thorax [Term] id: UBERON:0003825 name: abdominal segment nerve xref: MA:0000528 is_a: UBERON:0003439 ! implied link automatically realized ! trunk nerve intersection_of: UBERON:0001021 ! nerve intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0003826 name: upper leg bone xref: MA:0000682 is_a: UBERON:0003464 ! implied link automatically realized ! hindlimb bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0000376 ! upper leg [Term] id: UBERON:0003827 name: thoracic segment bone xref: MA:0000559 is_a: UBERON:0001474 ! implied link automatically realized ! bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0000915 ! thorax [Term] id: UBERON:0003828 name: abdominal segment bone xref: MA:0000525 is_a: UBERON:0003463 ! implied link automatically realized ! trunk bone intersection_of: UBERON:0001474 ! bone intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0003829 name: urethra muscle xref: MA:0002649 is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000057 ! urethra [Term] id: UBERON:0003830 name: thoracic segment muscle xref: MA:0000561 is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000915 ! thorax [Term] id: UBERON:0003831 name: respiratory system muscle xref: MA:0001828 is_a: UBERON:0000171 ! implied link automatically realized ! respiration organ is_a: UBERON:0001630 ! implied link automatically realized ! muscle organ intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001004 ! respiratory system [Term] id: UBERON:0003832 name: esophagus muscle xref: MA:0002682 is_a: UBERON:0000077 ! implied link automatically realized ! mixed endoderm/mesoderm-derived structure is_a: UBERON:0002378 ! implied link automatically realized ! muscle of abdomen is_a: UBERON:0003830 ! implied link automatically realized ! thoracic segment muscle intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0001043 ! esophagus [Term] id: UBERON:0003833 name: abdominal segment muscle xref: MA:0000527 is_a: UBERON:0001774 ! implied link automatically realized ! muscle of trunk intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0003834 name: thoracic segment blood vessel xref: MA:0000558 is_a: UBERON:0001981 ! implied link automatically realized ! blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0000915 ! thorax [Term] id: UBERON:0003835 name: abdominal segment blood vessel xref: MA:0000524 is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel intersection_of: UBERON:0001981 ! blood vessel intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0003836 name: abdominal segment skin xref: MA:0000530 is_a: UBERON:0002097 ! implied link automatically realized ! skin intersection_of: UBERON:0002097 ! skin intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0003837 name: thoracic segment connective tissue xref: MA:0000560 is_a: UBERON:0002384 ! implied link automatically realized ! connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0000915 ! thorax [Term] id: UBERON:0003838 name: abdominal segment connective tissue xref: MA:0000526 is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue intersection_of: UBERON:0002384 ! connective tissue intersection_of: part_of UBERON:0002417 ! abdominal segment of trunk [Term] id: UBERON:0003839 name: forelimb joint xref: MA:0000614 is_a: UBERON:0003657 ! implied link automatically realized ! limb joint intersection_of: UBERON:0003657 ! limb joint intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0003840 name: hindlimb joint xref: MA:0000662 is_a: UBERON:0003657 ! implied link automatically realized ! limb joint intersection_of: UBERON:0003657 ! limb joint intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003841 name: autopod joint xref: MA:0002715 is_a: UBERON:0003657 ! implied link automatically realized ! limb joint intersection_of: UBERON:0003657 ! limb joint intersection_of: part_of UBERON:0002470 ! autopod [Term] id: UBERON:0003842 name: neural lumen xref: HOG:0001119 is_a: UBERON:0000464 ! implied link automatically realized ! anatomical space [Term] id: UBERON:0003843 name: tooth epithelium xref: HOG:0001443 xref: ZFA:0005135 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003844 name: upper eyelid epithelium xref: HOG:0000638 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001712 ! upper eyelid [Term] id: UBERON:0003845 name: lower eyelid epithelium xref: HOG:0000637 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001713 ! lower eyelid [Term] id: UBERON:0003846 name: thymus epithelium xref: HOG:0001426 xref: MA:0000768 is_a: UBERON:0000483 ! implied link automatically realized ! epithelium intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0002370 ! thymus [Term] id: UBERON:0003847 name: thyroid artery xref: HOG:0001366 xref: MA:0002066 xref: ncithesaurus:Thyroid_Artery is_a: UBERON:0001637 ! implied link automatically realized ! artery intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0002046 ! thyroid follicle [Term] id: UBERON:0003848 name: gonadal vein xref: HOG:0001340 is_a: UBERON:0001638 ! implied link automatically realized ! vein is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0000991 ! gonad [Term] id: UBERON:0003849 name: neural crest midbrain xref: HOG:0000796 xref: ZFA:0000935 is_a: UBERON:0001891 ! implied link automatically realized ! midbrain intersection_of: UBERON:0001891 ! midbrain intersection_of: part_of UBERON:0002342 ! neural crest [Term] id: UBERON:0003850 name: neural crest telencephalon xref: HOG:0000799 xref: ZFA:0000812 is_a: UBERON:0001893 ! implied link automatically realized ! telencephalon intersection_of: UBERON:0001893 ! telencephalon intersection_of: part_of UBERON:0002342 ! neural crest [Term] id: UBERON:0003851 name: neural crest diencephalon xref: HOG:0000798 xref: ZFA:0000811 is_a: UBERON:0001894 ! implied link automatically realized ! diencephalon intersection_of: UBERON:0001894 ! diencephalon intersection_of: part_of UBERON:0002342 ! neural crest [Term] id: UBERON:0003852 name: neural crest hindbrain xref: HOG:0001210 xref: YMB:0007000 xref: ZFA:0007063 is_a: UBERON:0002028 ! implied link automatically realized ! hindbrain intersection_of: UBERON:0002028 ! hindbrain intersection_of: part_of UBERON:0002342 ! neural crest [Term] id: UBERON:0003853 name: neural crest spinal cord xref: HOG:0001006 is_a: UBERON:0002240 ! implied link automatically realized ! spinal cord intersection_of: UBERON:0002240 ! spinal cord intersection_of: part_of UBERON:0002342 ! neural crest [Term] id: UBERON:0003854 name: spinal cord neural plate xref: HOG:0000439 xref: ZFA:0007021 is_a: UBERON:0003075 ! implied link automatically realized ! neural plate intersection_of: UBERON:0003075 ! neural plate intersection_of: part_of UBERON:0002240 ! spinal cord [Term] id: UBERON:0003855 name: gonad mesenchyme xref: HOG:0001090 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000991 ! gonad [Term] id: UBERON:0003856 name: tooth mesenchyme xref: HOG:0001444 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001091 ! calcareous tooth [Term] id: UBERON:0003857 name: upper eyelid mesenchyme xref: HOG:0001093 is_a: UBERON:0003314 ! implied link automatically realized ! mesenchyme of eye intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001712 ! upper eyelid [Term] id: UBERON:0003858 name: lower eyelid mesenchyme xref: HOG:0001036 is_a: UBERON:0003314 ! implied link automatically realized ! mesenchyme of eye intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0001713 ! lower eyelid [Term] id: UBERON:0003859 name: forelimb mesenchyme xref: HOG:0001109 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002102 ! forelimb [Term] id: UBERON:0003860 name: hindlimb mesenchyme xref: HOG:0001074 is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002103 ! hindlimb [Term] id: UBERON:0003861 name: neural arch def: "posterior part of a vertebra that consists of a pair of pedicles and a pair of laminae, and supports seven processes: four articular processes, two transverse processes one spinous process[WP]. ZFA: A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone." [Wikipedia:Vertebral_arch] synonym: "arch of vertebra" EXACT [FMA:11946] synonym: "vertebral arch" EXACT [] xref: BTO:0001763 xref: FMA:11946 xref: ZFA:0001066 is_a: UBERON:0002513 ! endochondral bone is_a: UBERON:0003463 ! implied link automatically realized ! trunk bone is_a: UBERON:0003586 ! implied link automatically realized ! trunk connective tissue relationship: part_of UBERON:0001130 ! vertebral column [Term] id: UBERON:0003862 name: foot digit 4 phalanx xref: MA:0001384 xref: ncithesaurus:Foot_Digit_4_Phalanx is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003634 ! foot digit 4 [Term] id: UBERON:0003863 name: foot digit 5 phalanx xref: MA:0001385 xref: ncithesaurus:Foot_Digit_5_Phalanx is_a: UBERON:0001449 ! implied link automatically realized ! phalanx of toe intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0003635 ! foot digit 5 [Term] id: UBERON:0003864 name: middle phalanx of finger synonym: "middle phalanx of hand" EXACT [] xref: FMA:75817 xref: MA:0001394 xref: ncithesaurus:Middle_Phalanx_of_the_Hand is_a: UBERON:0001436 ! phalanx of finger [Term] id: UBERON:0003865 name: distal phalanx of finger synonym: "distal phalanx of hand" EXACT [] xref: FMA:75818 xref: MA:0001388 xref: ncithesaurus:Distal_Phalanx_of_Hand is_a: UBERON:0001436 ! phalanx of finger [Term] id: UBERON:0003866 name: middle phalanx of toe synonym: "middle phalanx of foot" EXACT [] xref: FMA:75829 xref: MA:0001386 is_a: UBERON:0001449 ! phalanx of toe [Term] id: UBERON:0003867 name: distal phalanx of toe synonym: "distal phalanx of foot" EXACT [] xref: FMA:75830 xref: MA:0001380 xref: ncithesaurus:Distal_Phalanx_of_Foot is_a: UBERON:0001449 ! phalanx of toe [Term] id: UBERON:0003868 name: proximal phalanx of toe synonym: "proximal phalanx of foot" EXACT [] synonym: "Proximal phalanx of toe" EXACT [] xref: FMA:75828 xref: MA:0001387 xref: ncithesaurus:Proximal_Phalanx_of_Foot is_a: UBERON:0001449 ! phalanx of toe [Term] id: UBERON:0003869 name: presumptive ganglion is_a: UBERON:0000479 ! implied link automatically realized ! portion of tissue intersection_of: UBERON:0000479 ! portion of tissue intersection_of: develops_into UBERON:0000045 ! ganglion [Term] id: UBERON:0003874 name: presumptive ventricle is_a: UBERON:0000479 ! implied link automatically realized ! portion of tissue intersection_of: UBERON:0000479 ! portion of tissue intersection_of: develops_into UBERON:0002300 ! ventricle [Term] id: UBERON:0003876 name: hippocampal region synonym: "hippocampus region" EXACT [] synonym: "subdivision of hippocampus" EXACT [] xref: FMA:74041 xref: MA:0002428 is_a: UBERON:0002616 ! regional part of brain intersection_of: UBERON:0002616 ! regional part of brain intersection_of: part_of UBERON:0001954 ! hippocampus relationship: part_of UBERON:0001954 ! hippocampus [Term] id: UBERON:0003881 name: CA1 field of hippocampus synonym: "CA1" EXACT [] synonym: "CA1 field" EXACT [] synonym: "hippocampus CA1" EXACT [] synonym: "region 1 of Ammon's horn" EXACT [] xref: EFO:0002454 xref: FMA:74042 xref: MA:0000950 is_a: UBERON:0003876 ! hippocampal region [Term] id: UBERON:0003882 name: CA2 field of hippocampus synonym: "CA2" EXACT [] synonym: "CA2 field" EXACT [] synonym: "hippocampus CA2" EXACT [] synonym: "region 2 of Ammon's horn" EXACT [] xref: EFO:0002455 xref: FMA:74044 xref: MA:0000951 is_a: UBERON:0003876 ! hippocampal region [Term] id: UBERON:0003883 name: CA3 field of hippocampus synonym: "CA3" EXACT [] synonym: "CA3 field" EXACT [] synonym: "hippocampus CA3" EXACT [] synonym: "region 3 of Ammon's horn" EXACT [] xref: EFO:0002456 xref: FMA:74045 xref: MA:0000952 is_a: UBERON:0003876 ! hippocampal region [Term] id: UBERON:0003884 name: CA4 field of hippocampus synonym: "CA4" EXACT [] synonym: "CA4 field" EXACT [] synonym: "hippocampus CA4" EXACT [] synonym: "region 4 of Ammon's horn" EXACT [] xref: EFO:0002457 xref: FMA:75741 xref: MA:0000953 is_a: UBERON:0003876 ! hippocampal region [Term] id: UBERON:0003885 name: mesentery of uterus synonym: "mesometrium" EXACT [FMA:19816, http://www.vivo.colostate.edu/hbooks/pathphys/misc_topics/peritoneum.html, MA:0002931] synonym: "uterus mesentery" EXACT [Obol:obol] xref: FMA:19816 xref: MA:0002931 is_a: UBERON:0001297 ! implied link automatically realized ! serosa of uterus is_a: UBERON:0002095 ! implied link automatically realized ! mesentery intersection_of: UBERON:0002095 ! mesentery intersection_of: part_of UBERON:0000995 ! uterus [Term] id: UBERON:0003886 name: body cavity precursor is_a: UBERON:0002553 ! implied link automatically realized ! anatomical cavity intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: develops_into UBERON:0002323 ! body cavity relationship: surrounded_by UBERON:0000926 ! mesoderm [Term] id: UBERON:0003887 name: intraembryonic coelom def: "In the development of the human embryo the intraembryonic coelom (or somatic coelom) is a portion of the conceptus forming in the mesoderm. During the second week of development, the lateral mesoderm splits into a dorsal somatic mesoderm (somatopleure) and a ventral splanchnic mesoderm (splanchnopleure). The resulting cavity between the somatopleure and splanchnopleure is called the intraembryonic coelom. This space will give rise to the thoracic and abdominal cavities. It briefly has a connection with the extraembryonic coelom[WP]." [Wikipedia:Intraembryonic_coelom] synonym: "somatic coelom" EXACT [] is_a: UBERON:0003886 ! body cavity precursor [Term] id: UBERON:0003888 name: extraembryonic coelom def: "cavity between Heuser's membrane and the Trophoblast[WP]." [Wikipedia:Extraembryonic_coelom] synonym: "chorionic cavity" EXACT [] is_a: UBERON:0003886 ! body cavity precursor [Term] id: UBERON:0003889 name: fallopian tube def: "Two very fine tubes lined with ciliated epithelia, leading from the ovaries of female mammals into the uterus, via the utero-tubal junction[WP]. Embryos have two pairs of ducts to let gametes out of the body; one pair (the Mullerian ducts) develops in females into the Fallopian tubes, uterus and vagina, while the other pair (the Wolffian ducts) develops in males into the epididymis and vas deferens." [Wikipedia:Fallopian_tube] comment: http://en.wikipedia.org/wiki/Talk:Fallopian_tube#Homology subset: uberon_slim synonym: "fallopian tubes" RELATED [] synonym: "mammalian oviduct" RELATED [] xref: EFO:0000974 xref: FMA:18245 xref: GAID:365 xref: galen:FallopianTube xref: MA:0000385 xref: OpenCyc:Mx4rvViVeZwpEbGdrcN5Y29ycA is_a: UBERON:0000993 ! oviduct relationship: connects UBERON:0000995 ! uterus relationship: connects UBERON:0001179 ! peritoneal cavity relationship: develops_from UBERON:0003890 ! Mullerian duct relationship: part_of UBERON:0002355 ! pelvis [Term] id: UBERON:0003890 name: Mullerian duct def: "paired ducts of the embryo that run down the lateral sides of the urogenital ridge and terminate at the mullerian eminence in the primitive urogenital sinus. In the female, they will develop to form the fallopian tubes, uterus, and the upper portion of the vagina; in the male, they are lost. These ducts are made of tissue of mesodermal origin[WP]." [Wikipedia:Mullerian_duct] synonym: "Müllerian_duct" EXACT [] xref: GAID:1309 xref: XAO:0000330 is_a: UBERON:0002050 ! embryonic structure relationship: develops_from UBERON:0000926 ! mesoderm [Term] id: UBERON:0003891 name: stroma def: "connective, non-functional supportive framework of a biological cell, tissue, or organ. Contrast with parenchyma." [Wikipedia:Stroma] xref: FMA:81494 is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0003893 name: capsule def: "a cover or envelope partly or wholly surrounding a structure. Examples: egg shell, articular capsules, renal capsules[WP]." [Wikipedia:Capsule_(anatomy)] comment: see also: protective structure surrounding some species of bacteria and fungi. xref: FMA:85272 xref: GO:0042603 is_a: UBERON:0000158 ! membranous layer [Term] id: UBERON:0003894 name: liver primordium def: "A primordium that is fated to develop into a liver." [GOC:obol] synonym: "liver bud" EXACT [XAO:0003266, ZFA:0000124] xref: XAO:0003266 xref: ZFA:0000124 is_a: UBERON:0001048 ! primordium intersection_of: UBERON:0001048 ! primordium intersection_of: develops_into UBERON:0002107 ! liver relationship: develops_into UBERON:0002107 ! liver relationship: part_of UBERON:0002423 ! hepatobiliary system [Term] id: UBERON:0003895 name: hypaxial myotome region def: "trunk muscle that lie ventral to the horizontal septum of the vertebrae." [Wikipedia:Epaxial_and_Hypaxial_muscles] synonym: "body wall muscle" RELATED [XAO:0003228] synonym: "hypaxial muscle" EXACT [ZFA:0001085] xref: XAO:0003228 xref: ZFA:0001085 is_a: UBERON:0001134 ! skeletal muscle tissue is_a: UBERON:0003898 ! implied link automatically realized ! skeletal muscle of trunk relationship: part_of UBERON:0003082 ! myotome [Term] id: UBERON:0003896 name: muscle of body wall comment: TODO - check trunk vs wall of trunk is_a: UBERON:0001774 ! implied link automatically realized ! muscle of trunk intersection_of: UBERON:0001630 ! muscle organ intersection_of: part_of UBERON:0000309 ! body wall relationship: develops_from UBERON:0003082 ! myotome [Term] id: UBERON:0003897 name: axial muscle def: "A skeletal muscle of the trunk or head." [] is_a: UBERON:0001134 ! skeletal muscle tissue union_of: UBERON:0003898 ! skeletal muscle of trunk union_of: UBERON:0003899 ! skeletal muscle of head [Term] id: UBERON:0003898 name: skeletal muscle of trunk def: "A skeletal muscle of the trunk." [] is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0002100 ! trunk [Term] id: UBERON:0003899 name: skeletal muscle of head def: "A skeletal muscle of the head." [] is_a: UBERON:0001134 ! implied link automatically realized ! skeletal muscle tissue intersection_of: UBERON:0001134 ! skeletal muscle tissue intersection_of: part_of UBERON:0000033 ! head [Term] id: UBERON:0003900 name: epaxial muscle def: "trunk muscle that lies dorsal to the septum." [Wikipedia:Epaxial_and_Hypaxial_muscles] xref: AAO:0000142 xref: TAO:0000349 xref: XAO:0003229 xref: ZFA:0000349 is_a: UBERON:0003898 ! skeletal muscle of trunk [Term] id: UBERON:0003901 name: horizontal myoseptum def: "A connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses." [ZFA:0000671] xref: ZFA:0000671 is_a: UBERON:0003037 ! septum relationship: adjacent_to UBERON:0003895 ! hypaxial myotome region relationship: adjacent_to UBERON:0003900 ! epaxial muscle [Term] id: UBERON:0003902 name: retinal neural layer def: "The layer of nerve cells in the retina[XAO]. The part of the retina that contains neurons and photoreceptor cells[GO]." [GO:0003407, XAO:0003216] synonym: "neural retina" EXACT [XAO:0003216, ZFA:0000046] synonym: "neuroretina" EXACT [ZFA:0000046] xref: XAO:0003216 xref: ZFA:0000046 is_a: UBERON:0001781 ! implied link automatically realized ! layer of retina [Term] id: UBERON:0003903 name: bursa of Fabricius def: "an epithelial and lymphoid organ that develops as a dorsal diverticulum of the proctadael region of the cloaca in birds. The luminal (interior) surface of the bursa is plicated with as many as 15 primary and 7 secondary plicae or folds. These plicae have hundreds of bursal follicles containing follicle-associated epithelial cells, lymphocytes, macrophages, and plasma cells. Lymphoid stem cells migrate from the fetal liver to the bursa during ontogeny. In the bursa, these stem cells acquire the characteristics of mature, immunocompetent B cells[WP]. The bursa is an organ found in birds involved in B cell differentiation[GO]." [GO:004854, Wikipedia:Bursa_of_Fabricius] is_a: UBERON:0000062 ! organ relationship: has_part UBERON:0003904 ! bursal plica [Term] id: UBERON:0003904 name: bursal plica def: "Follicle containing part of bursa of Fabricius." [GOC:cjm] synonym: "bursal fold" EXACT [] is_a: UBERON:0000064 ! organ part relationship: has_part UBERON:0003905 ! bursal follicle [Term] id: UBERON:0003905 name: bursal follicle def: "Follicle within the plicae of bursa of Fabricius." [GOC:cjm] is_a: UBERON:0000064 ! organ part [Term] id: UBERON:0003906 name: cardiac jelly def: "Portion of extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates." [ZFA:0001318] xref: ZFA:0001318 is_a: UBERON:0000479 ! portion of tissue relationship: adjacent_to UBERON:0002165 ! endocardium relationship: adjacent_to UBERON:0002349 ! myocardium [Term] id: UBERON:0003907 name: left atrioventricular canal xref: FMA:71123 is_a: UBERON:0002087 ! atrioventricular canal [Term] id: UBERON:0003908 name: right atrioventricular canal xref: FMA:71122 is_a: UBERON:0002087 ! atrioventricular canal [Term] id: UBERON:0003909 name: sinusoid def: "small blood vessel similar to a capillary but with a discontinuous endothelium. Sinusoids are found in the liver, lymphoid tissue, endocrine organs, and hematopoietic organs such as the bone marrow and the spleen. Sinusoids found within terminal villi of the placenta are not comparable to these; they possess a continuous endothelium and complete basal lamina[WP]." [Wikipedia:Sinusoid_(blood_vessel)] comment: the WP def seems to fit FMA:63198 discontinuous sinusoid (undefined). ZFA has ZFA:0005261 sinusoidal blood vessel endothelium - but not sinusoidal blood vessel synonym: "sinusoidal blood vessel" EXACT [] xref: FMA:63131 xref: ZFA:0005261 is_a: UBERON:0001981 ! blood vessel [Term] id: UBERON:0003910 name: splenic sinusoid def: "wide vessels in the spleen that drain into trabecular veins[WP]." [Wikipedia:Red_pulp#Sinusoids] synonym: "sinusoid of red pulp" EXACT [] synonym: "sinusoid of red pulp of spleen" EXACT [] synonym: "sinusoid of spleen" EXACT [] synonym: "spleen sinusoid" EXACT [] synonym: "spleen sinusoidal blood vessel" EXACT [] synonym: "splenic sinus" EXACT [] xref: FMA:63199 is_a: UBERON:0003497 ! implied link automatically realized ! abdomen blood vessel is_a: UBERON:0003513 ! implied link automatically realized ! trunk blood vessel is_a: UBERON:0003909 ! sinusoid intersection_of: UBERON:0003909 ! sinusoid intersection_of: part_of UBERON:0002106 ! spleen relationship: part_of UBERON:0002106 ! spleen [Term] id: UBERON:0003911 name: choroid plexus epithelium synonym: "epithelium of choroid plexus" EXACT [] xref: MA:0000824 is_a: UBERON:0000483 ! epithelium is_a: UBERON:0002791 ! implied link automatically realized ! regional part of telencephalon intersection_of: UBERON:0000483 ! epithelium intersection_of: part_of UBERON:0001886 ! choroid plexus relationship: part_of UBERON:0001886 ! choroid plexus [Term] id: UBERON:0003912 name: chitinous tooth def: "tooth-like structure composed of chitin." [] is_a: UBERON:0003913 ! radula [Term] id: UBERON:0003913 name: radula def: "an anatomical structure found in mollusks and used for feeding. It is a minutely toothed, chitinous ribbon. It is typically used for scraping or cutting food before the food enters the esophagus. The radula is unique to the molluscs, and is found in all classes of mollusks except for the bivalves." [Wikipedia:Radula] comment: see dermal denticle\nThe first bona fide radula dates to the Early Cambrian,[3] although trace fossils from the earlier Ediacaran have been suggested to have been made by the radula of the organism Kimberella.[WP] is_a: UBERON:0000061 ! anatomical structure [Term] id: UBERON:0003914 name: epithelial tube def: "Epithelial tubes transport gases, liquids and cells from one site to another and form the basic structure of many organs and tissues, with tube shape and organization varying from the single-celled excretory organ in Caenorhabditis elegans to the branching trees of the mammalian kidney and insect tracheal system." [GO:0060562, PMID:12526790] is_a: UBERON:0000025 ! tube is_a: UBERON:0000483 ! epithelium [Term] id: UBERON:0003915 name: endothelial tube is_a: UBERON:0000025 ! tube is_a: UBERON:0001986 ! implied link automatically realized ! endothelium is_a: UBERON:0003914 ! implied link automatically realized ! epithelial tube [Term] id: UBERON:0003916 name: fat pad def: "an accumulation of adipose tissue." [GO:0060613] synonym: "fat body" RELATED [FMA:58616] xref: AAO:0000157 xref: BTO:0000442 xref: BTO:0000444 xref: FMA:58616 xref: MA:0002481 xref: XAO:0003050 is_a: UBERON:0000062 ! organ relationship: part_of UBERON:0001013 ! adipose tissue [Term] id: UBERON:0003917 name: arthropod fat body def: "an insect gland dorsal to the insect gut, with a function analogous to that of the vertebrate liver. It is a storage organ for fats, glycogen and protein and is a major site of intermediary metabolism." [GO:0007503] xref: FBbt:00005066 xref: GAID:1213 xref: MIAA:0000096 is_a: UBERON:0000062 ! organ [Term] id: UBERON:0003918 name: mesenchyme of kidney synonym: "kidney mesenchyme" EXACT [] is_a: UBERON:0003104 ! implied link automatically realized ! mesenchyme intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0003919 name: mesenchyme of adult kidney synonym: "kidney stroma" EXACT [GO:0072072] is_a: UBERON:0003918 ! implied link automatically realized ! mesenchyme of kidney intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:0000082 ! adult mammalian kidney [Term] id: UBERON:0003920 name: venous blood vessel xref: FMA:86188 xref: MA:0000066 is_a: UBERON:0001981 ! blood vessel [Typedef] id: adjacent_to name: adjacent_to xref: OBO_REL:adjacent_to [Typedef] id: anterior_to name: anterior_to is_transitive: true created_by: cjm creation_date: 2009-07-31T02:15:46Z [Typedef] id: attached_to name: attached_to xref: :attaches_to [Typedef] id: bounds name: bounds domain: UBERON:0001062 ! anatomical entity range: UBERON:0001062 ! anatomical entity [Typedef] id: branch_of name: branch_of [Typedef] id: capable_of name: capable_of comment: capable_of <-> bearer_of . realized_by [Typedef] id: capable_of_regulation_of name: capable_of_regulation_of holds_over_chain: capable_of regulates [Typedef] id: coincides_with name: coincides_with def: "Relation between occurrents, shares start and end boundaries." [Allen:starts, UBERON:cjm] synonym: "coincides_with" EXACT [] domain: UBERON:0000105 ! life cycle stage is_a: finishes ! finishes is_a: starts ! starts intersection_of: finishes ! finishes intersection_of: starts ! starts [Typedef] id: connects name: connects [Typedef] id: constitutional_part_of name: constitutional_part_of [Typedef] id: continuous_with name: continuous_with [Typedef] id: develops_from name: develops_from is_transitive: true holds_over_chain: part_of develops_from transitive_over: part_of ! part_of [Typedef] id: develops_into name: develops_into [Typedef] id: directly_preceded_by name: directly_preceded_by domain: UBERON:0000105 ! life cycle stage range: UBERON:0000105 ! life cycle stage holds_over_chain: has_start end_of is_a: preceded_by ! preceded_by [Typedef] id: disconnected_from name: disconnected_from def: "A is disconnected_from B if they have no parts in common." [SO:cjm] synonym: "non_overlapping_with" EXACT [] synonym: "shares_no_parts_with" EXACT [] disjoint_over: part_of ! part_of is_metadata_tag: true [Typedef] id: end_of name: end_of domain: UBERON:0000103 ! life cycle stage boundary range: UBERON:0000105 ! life cycle stage [Typedef] id: existence_ends_at name: existence_ends_at def: "instance: c existence_ends_at e iff c exists_at e and not ( exists e2 : c exists_at e2 and e before e2). Type: all Cc, exists Ee, c existence_ends_at e." [UBERON:cjm] domain: UBERON:0001062 ! anatomical entity range: UBERON:0000103 ! life cycle stage boundary [Typedef] id: existence_ends_before name: existence_ends_before def: "Relation between continuant c and occurrent s, such that every instance of c ceases to exist before s." [UBERON:cjm] domain: UBERON:0001062 ! anatomical entity range: UBERON:0000105 ! life cycle stage holds_over_chain: existence_ends_during precedes [Typedef] id: existence_ends_during name: existence_ends_during def: "Relation between continuant c and occurrent s, such that every instance of c ceases to exist during some s, if it does not die prematurely." [UBERON:cjm] domain: UBERON:0001062 ! anatomical entity range: UBERON:0000105 ! life cycle stage transitive_over: part_of ! part_of [Typedef] id: existence_ends_with name: existence_ends_with def: "Relation between continuant and occurrent, such that c ceases to exist at the end of p." [UBERON:cjm] domain: UBERON:0001062 ! anatomical entity range: UBERON:0000105 ! life cycle stage [Typedef] id: existence_starts_after name: existence_starts_after def: "Relation between continuant c and occurrent s, such that every instance of c comes into existing after some s has completed." [UBERON:cjm] domain: UBERON:0001062 ! anatomical entity range: UBERON:0000105 ! life cycle stage holds_over_chain: existence_starts_during preceded_by disjoint_from: existence_starts_during ! existence_starts_during [Typedef] id: existence_starts_and_ends_during name: existence_starts_and_ends_during domain: UBERON:0001062 ! anatomical entity range: UBERON:0000105 ! life cycle stage is_a: existence_ends_during ! existence_ends_during is_a: existence_starts_during ! existence_starts_during intersection_of: existence_ends_during ! existence_ends_during intersection_of: existence_starts_during ! existence_starts_during [Typedef] id: existence_starts_at name: existence_starts_at def: "instance: c existence_starts_at e iff c exists_at e and not ( exists e2 : c exists_at e2 and e2 before e). Type: all Cc, exists Ee, c existence_starts_at e." [UBERON:cjm] domain: UBERON:0001062 ! anatomical entity range: UBERON:0000103 ! life cycle stage boundary [Typedef] id: existence_starts_during name: existence_starts_during def: "Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s." [UBERON:cjm] domain: UBERON:0001062 ! anatomical entity range: UBERON:0000105 ! life cycle stage transitive_over: part_of ! part_of [Typedef] id: existence_starts_or_ends_during name: existence_starts_or_ends_during domain: UBERON:0001062 ! anatomical entity range: UBERON:0000105 ! life cycle stage union_of: existence_ends_during ! existence_ends_during union_of: existence_starts_during ! existence_starts_during [Typedef] id: existence_starts_with name: existence_starts_with def: "Relation between continuant and occurrent, such that c comes into existence at the start of p." [UBERON:cjm] domain: UBERON:0001062 ! anatomical entity range: UBERON:0000105 ! life cycle stage holds_over_chain: existence_starts_at start_of [Typedef] id: exists_during name: exists_during domain: UBERON:0001062 ! anatomical entity range: UBERON:0000105 ! life cycle stage [Typedef] id: finishes name: finishes def: "Relation between occurrents, shares an end boundary with." [Allen:starts, UBERON:cjm] xref: ncithesaurus:Finish domain: UBERON:0000105 ! life cycle stage range: UBERON:0000105 ! life cycle stage is_a: part_of ! part_of [Typedef] id: has_end name: has_end domain: UBERON:0000105 ! life cycle stage range: UBERON:0000103 ! life cycle stage boundary [Typedef] id: has_part name: has_part is_transitive: true relationship: inverse_of_on_instance_level part_of ! part_of [Typedef] id: has_quality name: has_quality [Typedef] id: has_start name: has_start domain: UBERON:0000105 ! life cycle stage range: UBERON:0000103 ! life cycle stage boundary [Typedef] id: inheres_in_progenitor_of name: inheres_in_progenitor_of [Typedef] id: location_of name: location_of created_by: cjm creation_date: 2009-07-30T10:22:21Z [Typedef] id: only_in_taxon name: only_in_taxon [Typedef] id: overlaps name: overlaps xref: ncithesaurus:Overlap created_by: cjm creation_date: 2009-04-12T04:08:35Z [Typedef] id: part_of name: part_of subset: uberon_slim xref: OBO_REL:part_of is_transitive: true [Typedef] id: preceded_by name: preceded_by xref: OBO_REL:preceded_by domain: UBERON:0000105 ! life cycle stage range: UBERON:0000105 ! life cycle stage is_transitive: true disjoint_from: part_of ! part_of [Typedef] id: precedes name: precedes xref: OBO_REL:precedes domain: UBERON:0000105 ! life cycle stage range: UBERON:0000105 ! life cycle stage is_transitive: true relationship: inverse_of_on_instance_level preceded_by ! preceded_by [Typedef] id: regulates name: regulates [Typedef] id: secretes name: secretes [Typedef] id: separated_from_by name: separated_from_by formula: "(forall (x y z) (iff (separated_from_by x y z) (and (adjacent_to x z) (adjacent_to y z) (disconnected_from x y))))" CLIF [] [Typedef] id: site_of name: site_of def: "C site_of P iff exists species S such that P occurs_in C for all members of S. Example: bursa of Fabricius site_of B-cell differentiation." [GOC:cjm] [Typedef] id: start_of name: start_of domain: UBERON:0000103 ! life cycle stage boundary range: UBERON:0000105 ! life cycle stage [Typedef] id: starts name: starts def: "Relation between occurrents, shares a start boundary with." [Allen:starts, UBERON:cjm] domain: UBERON:0000105 ! life cycle stage range: UBERON:0000105 ! life cycle stage holds_over_chain: has_start start_of is_a: part_of ! part_of [Typedef] id: surrounded_by name: surrounded_by domain: UBERON:0001062 ! anatomical entity range: UBERON:0001062 ! anatomical entity [Typedef] id: surrounds name: surrounds xref: ncithesaurus:Surrounding domain: UBERON:0001062 ! anatomical entity range: UBERON:0001062 ! anatomical entity [Typedef] id: systemic_part_of name: systemic_part_of is_a: part_of ! part_of [Typedef] id: transports name: transports